Queries
Nucleotide Sequence (468 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
260.9 | 1039.2 | 31% | 5.411e-69 | 53% | NC_001948 | |
185.3 | 367.2 | 26% | 3.108e-46 | 30% | NC_009892 | |
183.9 | 391.5 | 25% | 8.059e-46 | 31% | NC_025388 | |
185.3 | 283.5 | 24% | 3.108e-46 | 51% | NC_028975 | |
183.0 | 290.0 | 19% | 1.521e-45 | 48% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5189 to 5527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.9 bits(563) | 0.0 | 105/113(93%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+P Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIP 5527
Range 2: 5191 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 84/112(75%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 G +RK S+KNFPYG ARL+ AAST G EN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P RTSR SF AI PTHLALVDS+LL G+WVLN Subject 5191 GILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLN 5526
Range 3: 5144 to 5527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.9 bits(371) | 0.0 | 74/128(58%) | 0/128(0%) | Minus/Minus |
Query 85 WNLRKESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 468 W+ E + *E P+W PQF SFNL LRKF T D HEEGY I++FMPW+ AFK T +AQLL SSTPM IKELL FITT+H + Q H ++PPGP * QIT D+GFKPF I AF L N I Subject 5144 WDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTI 5527
Range 4: 5145 to 5516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 71/124(57%) | 0/124(0%) | Plus/Plus |
Query 86 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSSYLTLSF 457 I +L+ S NA+M+NGLKP S *VIW+Q GPGG +W *++ +C VVMK N+SLM+IGVE SN*A V+ LKA+ QGIK I+*PSSW S +V NF S +LKL N*G +H G+SY LS+ Subject 5145 IVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSY 5516
Range 5: 5142 to 5513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 66/124(53%) | 0/124(0%) | Minus/Minus |
Query 83 GKCQVRTSRMALRASILQLQLEA*KILDVS*RP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVGSFHNHIALHGVPSMPSFQPTWPLLIPNYLMGYGF*TIPHSSIQTQVPQPRNP 454 GK +R S M AS+ QLQ A KI D +P*GRL N +LYAL CFQ H CS+A FH Y HQR V SFHNH A S P + PTWP L P+Y G GF*TI H SI T Q NP Subject 5142 GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNP 5513
Range 6: 5173 to 5520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 61/116(53%) | 0/116(0%) | Plus/Plus |
Query 114 MLE*GMV*NPYPIK*FGINKGQVGWKDGIEGTP*SAMWL*NDPTVL**T*VWKKRAIEQRV*KI*KHISKA*R*RFGNLPHGRQETSKIF*ASS*SCKIEARKAIREVLT*HFPFE 461 ML+* MV*NP+P++* G+N+GQVG +G+E A+WL*ND T+L** * W A EQ +*++*KH+ KA*R F NLPHG + S+IF A *SC+ EA + I E+L FP + Subject 5173 MLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQ 5520
Range 1: 5087 to 5425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 73/113(65%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIP+ LE+ RARWV K+ KE RE R G+E T+QF DEH +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +P Subject 5087 WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIP 5425
Range 2: 5236 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 34/63(54%) | 0/63(0%) | Minus/Minus |
Query 279 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNC 467 G + RKV +N P G A LN A S G E FLTA+R VTES+PLCLG ++S LS AL+ C Subject 5236 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVIC 5424
Range 3: 5089 to 5220 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 24/44(55%) | 0/44(0%) | Minus/Minus |
Query 132 LCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 263 LCSS NC V S*P S SF +I THLAL S+ G+ VLN Subject 5089 LCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN 5220
Range 4: 5042 to 5410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 37/123(30%) | 0/123(0%) | Minus/Minus |
Query 85 ESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 453 E ++ E W +P F +FN L + F + H E R+ MP I +F F+ V L A MF+ +LL +T + FL + +PP P + W++ F+P + F FL L + Subject 5042 EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNV 5410
Range 1: 4772 to 5110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 73/113(65%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTH+PL LES RA WV ++ +E+REVRCG ETT QF D+H G L+NA ERFE+IYPRH+G+DSVTFLMAV+KRL FS+P E+AKL RAKPYGKFL+ FL ++P Subject 4772 WFKTHLPLFELESIRASWVHRIMNREYREVRCGSETTTQFPDDHPSGAKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSQPSKESAKLNRAKPYGKFLVSEFLKRIP 5110
Range 2: 4774 to 5109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 60/112(54%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 G R ++NFP GFA + A S G E FLTA+RKVTESLPLCLGYM SNLS A P SS N VVS P RTSR S I T LAL+DS G WVLN Subject 4774 GILLRNSLTRNFP*GFALFSLADSFDGWEKLSLFLTAIRKVTESLPLCLGYMASNLSAAFAKVIFAPLG*SSGN*VVVSEPQRTSRYSRFIIL*TQLALMDSNSKRGRWVLN 5109
Range 3: 4763 to 5011 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 28/83(34%) | 0/83(0%) | Minus/Minus |
Query 121 FPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLI 369 F D H +G I + +PW+Y FKS + Q S + I++L F T +H T+F + NP FQ MGF+P+ + Subject 4763 FFDCH*KGD*ITSPVPWVYGFKSLCCICQSNFRSAGVIIRKLSCGF*TATHLTIFSIHYPVNPACSNGFQFKKRQMGFEPWFM 5011
Range 4: 4728 to 5081 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 36/118(31%) | 0/118(0%) | Plus/Plus |
Query 86 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSS 439 I R ++ + M +G KPI + WN G N V+C V K + LM E + +DLK Y QG I+ P W S * F + + L +* ++ TGSS Subject 4728 IRRWKSSLRRSNMNHGSKPICLFLNWNPLEQAGFTG**IENIVRCVAVQKPQLNFLMITPAERKLLWQMQQRDLKPYTQGTGEVIQSPF*WQSKKG*VFPNHQRSLPS*TGRNPTGSS 5081
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 4772 to 5110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 75/113(66%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTH+PL LES RA WV ++ KE+REVRCG ETT QF D+H L+NA ERFE+IYPRH+G+DSVTFLMAV+KRL FS+P VE+AKL RAKPYGKFLL+ FL ++P Subject 4772 WFKTHLPLFELESIRAGWVHRIMNKEYREVRCGSETTAQFPDDHPNRSKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSRPSVESAKLNRAKPYGKFLLNEFLKRIP 5110
Range 2: 4774 to 5109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 57/112(51%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 G R +KNFP G A + A ST G E F TA++KVTESLPLCLG M SNLS A L SS NC VVS P RTS S I TH AL+DS G VLN Subject 4774 GILFRNSFNKNFP*GLALFSLADSTDGREKLSLFFTAIKKVTESLPLCLG*MASNLSAAFAKVILDLFGWSSGNCAVVSEPQRTSLYSLFIIR*THPALIDSSSNKGRCVLN 5109
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5238 to 5576 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 72/113(64%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIP+ +LE+ RA+WV K+ +E RE R G TT+QF D+H R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VP Subject 5238 WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVP 5576
Range 2: 5390 to 5575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 34/62(55%) | 0/62(0%) | Minus/Minus |
Query 282 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN 467 GT RKVSS+N P G A +FA S G E FLTA+R V S+PLCLGY+ S S AL+N Subject 5390 GTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN 5575
Nucleotide Sequence (440 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
320.4 | 1797.8 | 42% | 5.749e-87 | 92% | NC_001948 | |
82.2 | 224.2 | 21% | 7.958e-29 | 37% | NC_010295 | |
85.4 | 247.3 | 30% | 5.472e-30 | 35% | NC_014821 | |
79.4 | 223.3 | 30% | 3.519e-29 | 42% | NC_028868 | |
80.3 | 217.8 | 30% | 3.08e-28 | 39% | NC_028975 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7028 to 7423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.4 bits(693) | 0.0 | 130/132(98%) | 0/132(0%) | Plus/Plus |
Query 45 TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSALFRGQHPSIPSRWALQRRYKKYNLL 440 TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKS LFRGQHPSIPSRWALQ RYKKYNLL Subject 7028 TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLL 7423
Range 2: 7012 to 7422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
315.4 bits(682) | 0.0 | 133/137(97%) | 0/137(0%) | Minus/Minus |
Query 29 SKLYFLYRLCNAHREGIDGCCPLNKADLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL*ATARSTASLPKHINTPSTSSVKGDPT 439 SKLYFLYR CNAHREGIDGCCPLNK DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL ATARSTASLPKHI+TPSTSSVKGDPT Subject 7012 SKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPT 7422
Range 3: 6989 to 7423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.6 bits(678) | 0.0 | 134/145(92%) | 0/145(0%) | Minus/Minus |
Query 6 Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVSNSEIHCLLTKAY*HPFNI*CKRRPHTSPKHTLS 440 Q*VILFVPSL*RPP*GN*WMLSPE*GRFD LRKCSTSPMPKPTVNGVMVFAQF G *KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVV NSEIHCLLTKAY*HPFNI*CKRRPH T++ Subject 6989 Q*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVT 7423
Range 4: 7011 to 7421 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 132/137(96%) | 0/137(0%) | Plus/Plus |
Query 28 VWGRLLH*MLKGC*YALVRRQWIXXXXXXXXXXYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQPPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY 438 +WGRLLH*MLKGC*YALVRRQWISLL TTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQ P NWAKTITPLTVGLGIGLVLHFLR+SNLPYSGDNIHQFPHGGRYRDGTKSITY Subject 7011 LWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITY 7421
Range 5: 7149 to 7421 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 86/91(95%) | 0/91(0%) | Minus/Minus |
Query 166 VSYTFCTVSVTPTVRELMDVVP*IRQI*PPQKMQHKPNAQANCQWSYGFCPIHRRLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKE 438 VSYTFCTV VTPTVRELMDVVP*IR I* PQKMQHKPNAQANCQWSYGFCPI R LKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKE Subject 7149 VSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKE 7421
Range 6: 7014 to 7118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 33/35(94%) | 0/35(0%) | Minus/Minus |
Query 31 HKVI*IQSCEQQRDPLPPYQSILTPLQHLV*KATP 135 HKVI*IQSC QQRDPLPPYQSIL PLQHLV*KATP Subject 7014 HKVI*IQSCAQQRDPLPPYQSILAPLQHLV*KATP 7118
Range 7: 7156 to 7422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 84/89(94%) | 0/89(0%) | Plus/Plus |
Query 173 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSRL*IGQKP*LH*QLAWALGLCCIF*GGQICLIQGTTSINSLTVGVTETVQKV*LT 439 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFS L IGQKP*LH*QLAWALGLCCIF*G QI LIQGTTSINSLTVGVT TVQKV*LT Subject 7156 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LT 7422
Range 1: 4637 to 4813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 31/59(53%) | 0/59(0%) | Plus/Plus |
Query 262 MPFQPPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY 438 MP QPP ++ + + L +G+ +L+ L RS LP+ GDNIH PHGG YRDGTKSI Y Subject 4637 MPLQPPTDYTRIYSFLVIGVSCVTILYLLTRSTLPHVGDNIHHLPHGGCYRDGTKSIYY 4813
Range 2: 4428 to 4637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 31/70(44%) | 0/70(0%) | Plus/Plus |
Query 51 DVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ* 260 D EG++I G EAV+L AH+ F PC+ G T +VVTLL + +D YI+ TRH +KL I+ * Subject 4428 DPEGLIIALGPEAVELLEAHSLPFLRPCQALGLTTSVVTLLTDKPLDEQDPVDAYISITRHTDKLNILS* 4637
Range 3: 4418 to 4627 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 26/70(37%) | 0/70(0%) | Minus/Minus |
Query 41 IINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL*ATARSTASLPKHINTPSTSSVK 250 +++ S+CLV M* S L +VTT V P QG A+ STAS P I PS S +K Subject 4418 MLSLSVCLVIEM*ASTGSCSSRGLSVSKVTTDVVSPRAWQGRRKGREWASNNSTASGPSAIIRPSGSKLK 4627
Range 1: 7347 to 7523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 31/59(53%) | 0/59(0%) | Plus/Plus |
Query 262 MPFQPPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY 438 MPF P +++K++ P+ +G + LVL L RS LP GDNIH PHGG Y+DGTK I+Y Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISY 7523
Range 2: 7130 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 20/45(44%) | 0/45(0%) | Plus/Plus |
Query 48 LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR 182 ++ EG +IC KE D H+ E+KLPC+VRG+TF+ VT + + Subject 7130 VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 3: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 8/15(53%) | 0/15(0%) | Plus/Plus |
Query 210 FYIAATRHREKLIIM 254 +Y+A TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 4: 7129 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 23/66(35%) | 0/66(0%) | Minus/Minus |
Query 47 NFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL*ATARSTASLPKHINTPSTSS 244 N LCLV+A ++ + +VT KV P T QGNL S +S+ S + I PS S+ Subject 7129 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGST 7326
Range 5: 7334 to 7525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 26/64(41%) | 0/64(0%) | Minus/Minus |
Query 249 Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*KGILLHD 440 Q*+IL VPS * PP*G MLSP G+ ++ T P G + G KGIL+ D Subject 7334 Q*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILIRD 7525
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 6837 to 7001 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 29/55(53%) | 0/55(0%) | Plus/Plus |
Query 274 PPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY 438 PP + + + P+ +GLG+G+V+ L RS LP GDNIH PHGG Y DGTK I+Y Subject 6837 PPPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISY 7001
Range 2: 6587 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 19/45(42%) | 0/45(0%) | Plus/Plus |
Query 51 DVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRD 185 D+EG ++C+ KE DL H +++K C++RGSTF++VT + + D Subject 6587 DIEGQIVCYEKEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD 6721
Range 3: 6731 to 6793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 11/21(52%) | 0/21(0%) | Plus/Plus |
Query 192 PEDRHWFYIAATRHREKLIIM 254 PEDR+ Y+ TRHR L I+ Subject 6731 PEDRYKVYLCLTRHRSILRIL 6793
Range 4: 6830 to 7003 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 29/58(50%) | 0/58(0%) | Minus/Minus |
Query 267 Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*K 440 Q*+ILFVPS * PP G W+LSP *G DL+R T+P P+P G GG K Subject 6830 Q*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIGNKTLVLSGGGVK 7003
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 6872 to 7036 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 30/55(55%) | 0/55(0%) | Plus/Plus |
Query 274 PPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY 438 PP + K + P+ VGLG+G+V+ L RS LP GDN+H PHGG Y DGTK I Y Subject 6872 PPPDNTKVLLPIAVGLGVGVVIWCLTRSTLPSVGDNVHSLPHGGNYMDGTKRINY 7036
Range 2: 6625 to 6756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 17/44(39%) | 0/44(0%) | Plus/Plus |
Query 54 VEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRD 185 VEG ++C+ KE +L H +++K C++RGSTF++VT + + + Subject 6625 VEGQIVCYEKEIFELLDRHGADYKRDCQIRGSTFDIVTFITASE 6756
Range 3: 6733 to 6828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 13/32(41%) | 0/32(0%) | Plus/Plus |
Query 159 VVTLLKSRDPTPEDRHWFYIAATRHREKLIIM 254 V + S PEDR+ Y+ TRHR L I+ Subject 6733 VTFITASESFEPEDRYKVYLCLTRHRSVLRIL 6828
Range 4: 6865 to 7038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 29/58(50%) | 0/58(0%) | Minus/Minus |
Query 267 Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*K 440 Q* I FVPS+* PP G LSP GR DL++ T+P PKPT G F GG K Subject 6865 Q*FIRFVPSM*FPPWGRLCTLSPTEGRVDLVKHQITTPTPKPTAMGKRTFVLSGGGVK 7038
Nucleotide Sequence (354 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
272.3 | 929.8 | 21% | 1.249e-72 | 51% | NC_001948 | |
138.1 | 138.1 | 33% | 3.247e-32 | 47% | NC_029087 | |
90.4 | 241.2 | 19% | 5.128e-31 | 38% | NC_009892 | |
93.2 | 248.5 | 29% | 2e-31 | 46% | NC_005343 | |
85.4 | 217.8 | 32% | 3.03e-29 | 43% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 4130 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.3 bits(588) | 0.0 | 111/117(95%) | 0/117(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKVAKAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYD Subject 4130 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYD 4480
Range 2: 4129 to 4482 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 100/118(85%) | 0/118(0%) | Minus/Minus |
Query 1 ESYVL*QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV 354 ESYVL* GSPASEMKASLRI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA ATL SSISRSFLIE A+ARLGETKVTN PSDLFMKLLY+KLFPAPNV Subject 4129 ESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNV 4482
Range 3: 4301 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 34/60(57%) | 0/60(0%) | Minus/Minus |
Query 173 IICALTRITSK*DESVTANNKET*INVTRGK*LNFIKDHAMTSL*TCNLSKENFEGNNIP 352 +ICALT ITSK*+ES+T NK+ *I+V+R K L+ IK+H + SL +CN SKEN + IP Subject 4301 VICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP 4480
Range 4: 4130 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 23/42(55%) | 0/42(0%) | Minus/Minus |
Query 2 IHFQVLLD*IG*SPPR*NKSHKFSFRSLHEALV*ETLSSPKC 127 IHF+++ D*I *S NK ++F+ R HE LV ETL SPKC Subject 4130 IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKC 4255
Range 5: 4306 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 31/58(53%) | 0/58(0%) | Plus/Plus |
Query 178 CCYLRSFP*KGYRSKGWSLRDL**SSAISPWLH*SMSPCYSQ*RFHLTCW*SLSKHI* 351 C FP*K R +GW L D ** +S W+H SM Y+ * FH TCW*S+SKHI* Subject 4306 CSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI* 4479
Range 6: 4129 to 4239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 19/37(51%) | 0/37(0%) | Plus/Plus |
Query 1 YIWGWKEFPIQELHEEI*RKICDFCFT*AGSSQFNQE 111 YIWGW+EF +QE HE++* I + CF+ S+FNQ+ Subject 4129 YIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK 4239
Range 7: 4323 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 29/53(55%) | 0/53(0%) | Minus/Minus |
Query 195 NHMCFDKDHQQVR*KRHCE*QGDIDQCNQGEIAELHQRSRNDQPLDL*PF*GK 353 +HMCFD DHQQV+*K H * ID+C Q E HQ+S + QP L F*GK Subject 4323 SHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GK 4481
Range 8: 4131 to 4235 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 18/35(51%) | 0/35(0%) | Minus/Minus |
Query 3 *LNWLEPA*VKQKSQIFLQIXXXXSCIGNSFQPQM 107 *LN L+ KQ+ +I+ Q S*+SC NS QPQM Subject 4131 *LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQM 4235
Range 9: 4320 to 4478 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 33/53(62%) | 0/53(0%) | Plus/Plus |
Query 192 KFSLERLQV*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSHLLVILVKAHM 350 +FSLE+LQ *RL * LM+ S F L T IY LL+ V LS HLLVI VKAHM Subject 4320 RFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHM 4478
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3670 to 4020 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 55/117(47%) | 0/117(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 TFGAGKS L+K FM ++G+ +T+VSPRR LA D+++D + K++ + W V TFE FL + ++ G VI DEVQL+PPGY+DL L ++ I L GDPCQS YD Subject 3670 TFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYD 4020
Range 1: 4208 to 4381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 35/58(60%) | 0/58(0%) | Plus/Plus |
Query 179 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 V+TFE+FL + +K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQS YD Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYD 4381
Range 2: 4034 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 28/55(51%) | 0/55(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKK 166 TFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K GK K Subject 4034 TFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 3: 4207 to 4365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 25/53(47%) | 0/53(0%) | Minus/Minus |
Query 178 QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT 336 QGSPA S + R RS *PGG S* SS IT P +R +SKV+T Subject 4207 QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST 4365
Range 4: 4033 to 4230 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 25/66(38%) | 0/66(0%) | Minus/Minus |
Query 1 KTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV 198 + S +++ F P L + S LI AR LGETKV FP D M L R L P P V Subject 4033 RNSSKVSTRTFFRSFPLPIFLFAPVKPMSHLISSARDLLGETKVIAFPGDFDMNFLNRVLLPHPKV 4230
Range 1: 3781 to 3972 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 36/64(56%) | 0/64(0%) | Plus/Plus |
Query 161 KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 K W+V TFEVFL+ K G VI DEVQL+PPGY+DL L ++RSD + + GDPCQS YD Subject 3781 KSANWNVFTFEVFLKMAAKSKPGQVVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQSDYD 3972
Range 2: 3610 to 3780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 26/57(46%) | 0/57(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEG 172 TFGAGKS L+K F+ +S G+ VTFVSPR+ALA ++K ++ + K K++G Subject 3610 TFGAGKSRLFKEFISKSPGRCVTFVSPRKALAEAVKTEIFGESREGKKKGRNGKRDG 3780
Range 3: 3792 to 3956 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 29/55(53%) | 0/55(0%) | Minus/Minus |
Query 172 QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ 336 QGSP ++ SLRI+ R RS PGG + TSS +T *P F LR TSKV T Q Subject 3792 QGSPTTKTFTSLRISVRARSRYPGGYNCTSSIMTT*PGFDLAAILRNTSKVKTFQ 3956
Range 1: 4363 to 4536 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 32/58(55%) | 0/58(0%) | Plus/Plus |
Query 179 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYD 4536
Range 2: 4186 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 25/39(64%) | 0/39(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL 118 TFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4186 TFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Nucleotide Sequence (390 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
256.3 | 1456.9 | 41% | 9.84e-68 | 96% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7521 to 7871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
256.3 bits(553) | 0.0 | 114/117(97%) | 0/117(0%) | Minus/Minus |
Query 2 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNISFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 352 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPP+ SFTVDARASLGPQFSIKIDSPVALMKQPW LPLLLST*ARIWMAITIPTKTRIPNRQY Subject 7521 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQY 7871
Range 2: 7522 to 7875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
252.2 bits(544) | 0.0 | 115/118(97%) | 0/118(0%) | Minus/Minus |
Query 3 KTFRXXXXXXXLQRF*PGFKSLI*FTGEFPNLTCHSTNLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 356 +TFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHS NLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLV+ATTAVYMSKDLDGNYNSYQDQNSKQTI Subject 7522 RTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTI 7875
Range 3: 7520 to 7876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.1 bits(498) | 0.0 | 117/119(98%) | 0/119(0%) | Plus/Plus |
Query 1 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAXXXXXXXXXXXXXEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 357 CIVCLEFWSW*EL*LPSKSLLM*TAVVA TKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKL EWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL Subject 7520 CIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 7876
Range 4: 7521 to 7742 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 71/74(96%) | 0/74(0%) | Plus/Plus |
Query 2 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGDVGRFEGFRG*PCC*R 223 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQ PRLLH*GHWRVNFD*KLRPK*GPCIHCEG GRFEGFRG*PCC*R Subject 7521 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*R 7742
Range 5: 7788 to 7871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 28/28(100%) | 0/28(0%) | Plus/Plus |
Query 269 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 352 ETPR*IK*GF*SPAKIAGVS*SSKAAGR Subject 7788 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 7871
Range 6: 7520 to 7732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 68/71(96%) | 0/71(0%) | Minus/Minus |
Query 1 HG*PLKPSNLPTSPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 213 HG*PLKPSNLP PSQWMQGPHLGRSFQSKLTLQWP**SNLG CHYCCLHEQGFGWQLQFLPRPEFQTDNT Subject 7520 HG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNT 7732
Range 7: 7787 to 7873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 28/29(97%) | 0/29(0%) | Minus/Minus |
Query 268 DLPAAFEL*LTPAILAGLQKPHLIHRGVS 354 +LPAAFEL*LTPAILAGLQKPHLIHRGVS Subject 7787 NLPAAFEL*LTPAILAGLQKPHLIHRGVS 7873
Range 8: 7582 to 7872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 96/97(99%) | 0/97(0%) | Plus/Plus |
Query 63 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 353 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG Subject 7582 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 7872
Nucleotide Sequence (615 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
441.4 | 1372.5 | 50% | 3.521e-123 | 45% | NC_001948 | |
109.2 | 396.8 | 50% | 4.047e-49 | 40% | NC_009892 | |
115.6 | 294.3 | 36% | 1.175e-46 | 40% | NC_003462 | |
116.1 | 306.2 | 37% | 8.575e-47 | 43% | NC_018714 | |
117.5 | 312.2 | 27% | 3.674e-48 | 48% | NC_008020 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6332 to 6940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
441.4 bits(957) | 0.0 | 179/203(88%) | 0/203(0%) | Minus/Plus |
Query 6 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 614 +RICIAREMGNLENCIDNYAIE SYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+F AFTAGVPD+PNL+GRYIKPYSPGCAV G++NILDEYLSV D SGFDVLFSDPYQNIS+P+EAHFIKSKTCRF Subject 6332 ERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRF 6940
Range 2: 6337 to 6603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 69/89(78%) | 0/89(0%) | Plus/Minus |
Query 343 DKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAMQI 609 D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLTKN TQL* ASTSSS IIS+ +SP+ A*++SIA*LS+QFSRLPIS AM I Subject 6337 DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHI 6603
Range 3: 6685 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 63/85(74%) | 0/85(0%) | Plus/Minus |
Query 7 NLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 NLQV D MK ASLG L+F YGSENSTSKPE S TD+YSSS+ P TA PGE GLMYLP RLG+SGTPAVKA+K SSS +SSLIK Subject 6685 NLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 6939
Range 4: 6464 to 6922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 78/153(51%) | 0/153(0%) | Plus/Minus |
Query 24 LYEVSLPRNTDILIWVRE*HVKTRNVINRQILIKYVYPPFYSATRRVWLDVPPRKIGSVRNSGCEGCETLVLSDEFSYQTTFTATRNTMNNNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV 482 L E+ L RN D+L+WVRE H+KT +++ Q+LIKY+ P++ R+ L+VP +I +V N+ CE E L+L + Y TTFT TR+TMN+ WK +HT +T+KLK Q FN*+IHN MPNT*GLI SFK + N*ASHL+L+ +QE +T+++ Subject 6464 LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM 6922
Range 5: 6332 to 6424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 16/31(52%) | 0/31(0%) | Plus/Minus |
Query 522 LAQPVGIGLLNCIIINAVFQVTHFASNANSL 614 L+Q V IG L II+N + QV H SNA L Subject 6332 LSQSVCIGDLYRIIVNTILQVAHLPSNAYPL 6424
Range 6: 6342 to 6944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 103/201(51%) | 0/201(0%) | Plus/Minus |
Query 2 RQICRSWTL*SEPPSEH*YFDMGQRIARQNQKCHQQTDTHQVCLSSLLQRNQESMA*CTSQKDWECQELRL*RL*NSRPQ**VLLSNYFYRYQEHYEQQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PRTAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQC 604 RQ + T *+ P E * F MG R A QN K +T THQV SL E+ A*CT D C E L*+L*NS P+ L NYFY YQ HYE LEI*AH +H QTQ T L*L+YS* S++AK+LRPN *LQ KLSISS A *PR H+ + LL SSFQ P HR P HN Q + PG P QC Subject 6342 RQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QC 6944
Range 7: 6337 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 70/128(55%) | 0/128(0%) | Minus/Plus |
Query 226 NLHCSRNG*PGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAVLG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQIXXXXXXXSW*R*K*FDKRTHH*GREF 609 ++HC +G PG+L+* LC+ G+LC+ GR +*ND+ RS L LC +LG + A DEMLNF +*SY LGLK LA +YYE* S*S V +*VC C CA ISS S*C+W* *K*F+K + G EF Subject 6337 DMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EF 6720
Range 8: 6766 to 6933 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Plus |
Query 13 EVHQAILSWLRCKREDKHT**VSVC**HFWF*RAIL*PISKYQCSEGGSLHKVQDL 180 +VH A+ S + RE +T**V V F F* A+L PI K+Q S G+ H+V++L Subject 6766 KVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL 6933
Range 9: 6474 to 6659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 38/62(61%) | 0/62(0%) | Minus/Plus |
Query 287 VCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLLFI 472 V SW S R*DAQF LKL IRP*VFG++*+L*I *LK C LSL V VC +FQ FI Subject 6474 VLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFI 6659
Range 1: 6482 to 6853 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 52/124(42%) | 0/124(0%) | Minus/Plus |
Query 6 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 377 V +M+ +V L + F + ++VH+VPGSGK++LIRE + + AF+ G PD PN+ GRYIK G G ILDEYLS + +GFD FSDP+QN AHF+ + RF Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRF 6853
Range 2: 6230 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 40/70(57%) | 0/70(0%) | Minus/Plus |
Query 405 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI 614 +R+ IA E NL+NCIDNYAIE SYAY +GE + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I Subject 6230 ERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 3: 6231 to 6380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 24/50(48%) | 0/50(0%) | Plus/Minus |
Query 464 TAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQCKFS 613 T+HSCS LLHSS T P +H PQLHN QC+ G F++Q + S Subject 6231 TSHSCSVHPFLLHSSTWKVTPPWSKHMKPQLHNCQCNSGGCLFQQQSEAS 6380
Range 4: 6598 to 6828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 31/77(40%) | 0/77(0%) | Plus/Minus |
Query 31 K*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 K*A + F* GSE S P +S +RYSSSM LP P M P+ G SG+P KA + +SLI+ Subject 6598 K*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR 6828
Range 5: 6362 to 6430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 12/23(52%) | 0/23(0%) | Plus/Minus |
Query 414 KQSRN*ASHLVLISNQEPHTVVV 482 K+ RN V + N EPHTVVV Subject 6362 KEIRNRTF*KVGVLNNEPHTVVV 6430
Range 6: 6241 to 6420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 33/60(55%) | 0/60(0%) | Plus/Minus |
Query 424 EIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM 603 E EH LT N TQL*CAS SSS +SP *A ++SIA*LSMQF RL +S A+ Subject 6241 ETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVSTAI 6420
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6702 to 7073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 54/124(44%) | 0/124(0%) | Minus/Plus |
Query 6 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 377 V IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + +GF+ LFSDPYQN AHFI + RF Subject 6702 VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRF 7073
Range 2: 6381 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 37/68(54%) | 0/68(0%) | Minus/Plus |
Query 411 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 614 +R+ IARE NLENCIDNYAIE S AY++GE + +EV+AHYNCVRF+V++ H ++ +I LF+ Subject 6381 ERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK 6584
Range 3: 6818 to 7051 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 31/78(40%) | 0/78(0%) | Plus/Minus |
Query 28 MK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 MK*A + F GSE P S D+YSS M LP P L+Y+P L SGTP V A L + + IK Subject 6818 MK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASILLFRIKACFIK 7051
Range 4: 6392 to 6547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 26/52(50%) | 0/52(0%) | Plus/Minus |
Query 448 LFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM 603 L T RTQL* ASTS + SP L A ++SIA*LS+QFS+ +S A+ Subject 6392 LCCTMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSKFLVSLAI 6547
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6673 to 7041 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 53/123(43%) | 0/123(0%) | Minus/Plus |
Query 6 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 374 +IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + +GF+ LFSDPYQN AHFI + RF Subject 6673 LIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRF 7041
Range 2: 6382 to 6582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 37/67(55%) | 0/67(0%) | Minus/Plus |
Query 414 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 614 +R+ IARE NLENCIDNYAIE S AY++GE ++ +EV+AHYNCVRF+V++ H ++ +I LF Subject 6382 ERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF 6582
Range 3: 6393 to 6548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 31/52(60%) | 0/52(0%) | Plus/Minus |
Query 448 LFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM 603 L T RTQL*CASTS SP L*A ++SIA*LSMQFSR +SRA+ Subject 6393 LCCTMKRTQL*CASTS*GDRYKFKFSPIL*AQETSIA*LSMQFSRFLVSRAI 6548
Range 4: 6816 to 6989 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 26/58(45%) | 0/58(0%) | Plus/Minus |
Query 58 F*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKL 231 F*YGSE KP S DRYSS + P P LM +P SGTP V A L Subject 6816 F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML 6989
Range 1: 5874 to 6116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 49/81(60%) | 0/81(0%) | Minus/Plus |
Query 372 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI 614 +R+CIA+E NL NCIDNYAIE SYAY+LGEL++ MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ + GV+ Subject 5874 ERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM 6116
Range 2: 6153 to 6359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 43/69(62%) | 0/69(0%) | Minus/Plus |
Query 162 MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPY 368 M+ LV F F V SVLR PV+ H VPG+GKS+LIRELI D F AFTAG PD PNLSGR IK Y Subject 6153 MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY 6359
Range 3: 5885 to 6115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 37/77(48%) | 0/77(0%) | Plus/Minus |
Query 373 ITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM 603 ITP + + I+ N EIE CLF T TQL AS SSSFI NSP+L A*++S+A*LS+Q +L +S A+ Subject 5885 ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAI 6115
Nucleotide Sequence (404 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
320.9 | 1678.9 | 30% | 3.672e-87 | 86% | NC_001948 | |
120.2 | 225.0 | 25% | 6.279e-31 | 52% | NC_028975 | |
116.5 | 208.5 | 32% | 2.204e-30 | 32% | NC_028868 | |
102.3 | 224.5 | 29% | 3.725e-32 | 40% | NC_009892 | |
121.1 | 221.8 | 25% | 4.589e-31 | 48% | NC_025388 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7996 to 8397 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 133/134(99%) | 0/134(0%) | Minus/Plus |
Query 1 DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 402 +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK Subject 7996 NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 8397
Range 2: 7996 to 8397 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.0 bits(620) | 0.0 | 116/134(87%) | 0/134(0%) | Plus/Minus |
Query 1 FGWSSLNATLRFKRALICDSKEEVKGCKFLILIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKRTYQLVYCTFIHDI 402 F WSS N+TL FKR LICDS+E++KGCK ILIKS LGP+S W PRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLA QG*PLGATNIRAVTCYIY HIKLHAFSYARFTK T QLVYCTFIHDI Subject 7996 FRWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDI 8397
Range 3: 7995 to 8396 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.7 bits(591) | 0.0 | 115/134(86%) | 0/134(0%) | Minus/Plus |
Query 2 RCHG*RCNRRADTCVW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**E*EICSL*LLPWSHR*ERA*TEGWH*ESSNQ 403 +CHG*RCNRRAD+C+W*IWHS*KRAI*CG+RYSTSLL*CW*LPEVNPD QESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGD+T *LGQE I**E*++CSL* SHR*E A*T+GW+*+SSN+ Subject 7995 KCHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNE 8396
Range 4: 7994 to 8392 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.5 bits(584) | 0.0 | 115/133(86%) | 0/133(0%) | Plus/Minus |
Query 6 LELS*CHPSVQARSHL*LQGRSQRLQISHSH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQTHVSARLLHLHP*HL 404 LEL * HP VQA SHL*L ++QRLQ HSH*I SWP+* V SPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSC SGLTSGSYQHQSSDVLYL PHQIARFQLCQIHQ H SARLLHLHP*HL Subject 7994 LELF*FHPLVQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHESARLLHLHP*HL 8392
Range 5: 7994 to 8392 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 116/133(87%) | 0/133(0%) | Minus/Plus |
Query 6 QMSWMKVQ*TS*YVRLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMRMRNLQPLTSSLESQMRARLNRRVALRELQ 404 QMSWMKVQ*TS*+V LVNLA*LKACNLMW *I*HVTALMLVAPRGQP* ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRG+H L GPR+DLMRM++LQPL S ESQMR RLN+RV L+ELQ Subject 7994 QMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQ 8392
Range 6: 8046 to 8393 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.2 bits(568) | 0.0 | 113/116(97%) | 0/116(0%) | Plus/Minus |
Query 5 VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 352 VGALL+PPFGSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAIS+ATSNCTLSAMPD Subject 8046 VGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPD 8393
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 8222 to 8452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 46/77(60%) | 0/77(0%) | Minus/Plus |
Query 7 LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAP 237 + R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +ALEP+ G+ R P Subject 8222 VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAALEPENGLVRKP 8452
Range 2: 8144 to 8212 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 12/23(52%) | 0/23(0%) | Minus/Plus |
Query 244 DIARHCSDVGSSQRSTLIGKSPF 312 DIAR+C+D GSS+ + IG S + Subject 8144 DIARYCADAGSSESTEFIGTSSY 8212
Range 3: 8227 to 8451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 41/75(55%) | 0/75(0%) | Plus/Minus |
Query 8 GALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDL 232 G L P GS A T KKSKAANF FSL P GGI V+ MFHTI A* QNLR+VV L+ AIS L Subject 8227 GFLTSPFSGSKAALLDTCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLMTAAISIL 8451
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 8162 to 8392 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 44/77(57%) | 0/77(0%) | Minus/Plus |
Query 7 LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAP 237 + R EIA +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF V++ +ALEP+ G+ R P Subject 8162 VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAALEPENGLVREP 8392
Range 2: 7994 to 8152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 17/53(32%) | 0/53(0%) | Minus/Plus |
Query 244 DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPF 402 D+ I+ + +G+ ES DIAR+C+D GSS + IG S + Subject 7994 DISTAEEIEHIRSDLVRAGVPESTLTFSMWDIARYCADAGSSASTEFIGTSSY 8152
Range 3: 8167 to 8394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 36/76(47%) | 0/76(0%) | Plus/Minus |
Query 5 VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDL 232 +G+ P GSSA T KKS A NF F L PF GG+ V MF TIFA* Q VV LI AIS L Subject 8167 LGSRTSPFSGSSAALFETCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLITEAISIL 8394
Range 1: 8549 to 8740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 39/64(61%) | 0/64(0%) | Minus/Plus |
Query 4 TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPT 195 TLR+FC YYAK+VWN+ LET PPA W+ KG+ + K+AAFDFF GV +ALEP GI R PT Subject 8549 TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAALEPVDGIIRKPT 8740
Range 2: 8339 to 8533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 26/65(40%) | 0/65(0%) | Minus/Plus |
Query 205 VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR 399 V E I ++ F + G++ +V + IARHC+DVGSS +S LIG P D+ E+A II+ Subject 8339 VASEEKISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK 8533
Range 3: 8518 to 8742 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 35/75(47%) | 0/75(0%) | Plus/Minus |
Query 2 LVGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAIS 226 LVG L++P GS A TP KKSKAA SL P L Q+AGG+ VS F TI A* QN R V ++++ ++ Subject 8518 LVGFLMIPSTGSRAAELSTP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLLMIVA 8742
Range 1: 8207 to 8431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 47/75(63%) | 0/75(0%) | Minus/Plus |
Query 7 RSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAP 231 R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +ALEP+ G+ R P Subject 8207 RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAALEPENGLVRKP 8431
Range 2: 8123 to 8191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 11/23(48%) | 0/23(0%) | Minus/Plus |
Query 244 DIARHCSDVGSSQRSTLIGKSPF 312 DIAR+C+D GSS+ + +G S + Subject 8123 DIARYCADAGSSESTEFVGTSSY 8191
Range 3: 8206 to 8430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 40/75(53%) | 0/75(0%) | Plus/Minus |
Query 8 GALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDL 232 G L P GS A T KKSKAANF FSL PF GG+ V+ MF TI A* QNL +VV LI AIS L Subject 8206 GFLTSPFSGSKAALFETCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLITAAISIL 8430
Nucleotide Sequence (640 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
437.7 | 2235.4 | 30% | 4.669e-122 | 94% | NC_001948 | |
107.4 | 276.4 | 30% | 2.116e-45 | 41% | NC_003462 | |
108.3 | 280.6 | 33% | 1.243e-46 | 37% | NC_009892 | |
115.2 | 310.5 | 18% | 4.281e-49 | 54% | NC_008020 | |
108.7 | 222.7 | 27% | 9.865e-46 | 38% | NC_010538 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6326 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
437.7 bits(949) | 0.0 | 183/187(98%) | 0/187(0%) | Plus/Plus |
Query 79 VGERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 + ERICIAREMGNLE CIDNYAIEVSYAYRLGEL+IEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6326 IWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6886
Range 2: 6326 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
403.4 bits(874) | 0.0 | 176/187(94%) | 0/187(0%) | Minus/Minus |
Query 79 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEVFILGN*LPYXXXXXXXXXTMNDYWKFKHTENSYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPLPD 639 LVWVREQHIKT*KILDGQVLIKYI+FPWHCTPWRIRLNVPSCEIRAVWNTCCESYE+ ILGN*LPY*TTFTTTRHTMNDYWKFKHTEN+YKLKC*QCFN*IIHNTQIMPNT*GLIN FK*A*N*ASHLMLVPDQESNTIIM LHFFLGHHFNG*LSQ V IG+LYRIIVNT LQV HLPSNAYPLPD Subject 6326 LVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD 6886
Range 3: 6324 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
381.4 bits(826) | 0.0 | 176/188(94%) | 0/188(0%) | Minus/Minus |
Query 77 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*SFHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KXXXXXXXXXXXLNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNEPPLLPRSSFQWIALPAGTHRKPLSHNCQYISPGYPSP*QCISAPRL 640 FGMGPRTAHQNLKNLGRTSTHQVY LSLALHTLENKA*CTFL*D*GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAHYE*LLEI*AH*K LQTQMLTML*LNYS*YSNNAKYLRPNQ LQIGLKLSISSYACS*PRI*HNYN PPLLPRSSFQW+ALP G HR+PLSHNCQY SPG PSP*QCISAPRL Subject 6324 FGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRL 6887
Range 4: 6327 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
366.3 bits(793) | 0.0 | 175/187(94%) | 0/187(0%) | Plus/Plus |
Query 80 SGSGYALLGRWVTWRNVLTIMR*RFPMRTGWESYPLK**PRKKWRLIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*EFSVCLNFQ*SFIVCLXXXXXXXXGS*FPRMKTS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 640 SGSGYALLGRW TWR VLTIMR*R PM T WES PLK**PRKKWR IIIVLDSWSGTSIR*DAQFQAYLK LIRP*VFGII*VL*II*LKHCQHLSL* FSVCLNFQ*SFIVCLVVVKVV**GS*FPRM+ S*LSQQVFQTALISQEGTLSLILQGVQCQGK IYLMSTCPSKIFQVLMCCSRTHTK Subject 6327 SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTK 6887
Range 5: 6469 to 6666 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Minus |
Query 222 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 419 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL Subject 6469 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 6666
Range 6: 6715 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 56/57(98%) | 0/57(0%) | Minus/Minus |
Query 468 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 638 WYGSENSTSKPEKSWTDKYSSSI TFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF Subject 6715 WYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6885
Range 7: 6331 to 6414 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 27/28(96%) | 0/28(0%) | Minus/Minus |
Query 84 RYA*ETSIA*LSIHFSRLPISLAMHIRS 167 RYA*ETSIA*LSI FSRLPISLAMHIRS Subject 6331 RYA*ETSIA*LSIQFSRLPISLAMHIRS 6414
Range 8: 6331 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
300.7 bits(650) | 0.0 | 173/185(94%) | 0/185(0%) | Plus/Plus |
Query 84 GADMHC*GDG*PGEMY*QLCDRGFLCVPAGRAIH*NXXXXXXXXXXXXC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FXXXXXXXXXCRSFQCA*IXXXXXXCAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVXXXXXXXXCAVLGPIP 638 GADMHC*GDG PGE+Y*QLCDRG LC+P GRA H*NDDRGRSGG L*LC*ILGQEQA*DEMLNFRPI*S *LGLKYLALFEYYE*FS*SIVSI*VCR FQCA*ISSSHS*CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH*ALFSRVCSARES YT**VLVRPRFFRF*CAVLGPIP Subject 6331 GADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIP 6885
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6672 to 7019 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 48/116(41%) | 0/116(0%) | Plus/Plus |
Query 292 ID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 + * + + +SIM ++ L+ F F L P+V+H+VPGSGK++LI++ + + N A T GVP+ N+ G YIK G G +ILDEYLS + +GF+ LFSDPYQ Subject 6672 VS*HIRFGYRVSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQ 7019
Range 2: 6381 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 39/68(57%) | 0/68(0%) | Plus/Plus |
Query 85 ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 288 ER+ IARE NLE CIDNYAIEVS AY++GE +T +EV+AHYNCVRF+V++ H ++ +I LF+ Subject 6381 ERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK 6584
Range 3: 6857 to 7018 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 22/54(41%) | 0/54(0%) | Minus/Minus |
Query 477 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKA 638 W GSE P + DKYSS + P P L+Y+P L SGTP V A Subject 6857 W*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTA 7018
Range 1: 6230 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 41/70(59%) | 0/70(0%) | Plus/Plus |
Query 85 ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI 294 ER+ IA E NL+ CIDNYAIEVSYAY +GE + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I Subject 6230 ERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 2: 6482 to 6799 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 44/106(42%) | 0/106(0%) | Plus/Plus |
Query 322 LSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 +++M+ +V L + F ++ +++H+VPGSGK++LIRE ++ + AF+ G PD PN+ GRYIK G G ILDEYLS + +GFD FSDP+Q Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQ 6799
Range 3: 6230 to 6394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 22/55(40%) | 0/55(0%) | Minus/Minus |
Query 85 VPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPL 249 V + E +T+++ +HFF *L V I NL IIVN L+V SN PL Subject 6230 VLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNAILEVVCFNSNLKPL 6394
Range 1: 5874 to 6092 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 47/73(64%) | 0/73(0%) | Plus/Plus |
Query 85 ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*A 303 ER+CIA+E NL CIDNYAIEVSYAY+LGEL++ M EEE EA YNCVR +V+NKH ++ SIS LF+ I *+ Subject 5874 ERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*S 6092
Range 2: 6141 to 6359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 44/73(60%) | 0/73(0%) | Plus/Plus |
Query 319 YLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPY 537 YL M+ LV F F V SVL+ PV+ H VPG+GKS+LIRELI+ D FIAFTAG PD PNL+GR IK Y Subject 6141 YLKYMDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY 6359
Range 3: 5867 to 5953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 18/29(62%) | 0/29(0%) | Minus/Minus |
Query 78 YA*ETSIA*LSIHFSRLPISLAMHIRSPT 164 YA*ETS+A*LSI +L +S A+H RS T Subject 5867 YA*ETSMA*LSIQLIKLFVSFAIHRRSST 5953
Range 1: 5738 to 5941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 40/68(59%) | 0/68(0%) | Plus/Plus |
Query 85 ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 288 ER+CIA E+ NL CIDNYAIEV+YAY LGE ++ M+EEEV A YNCVR ++RNKH ++ + G++E Subject 5738 ERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE 5941
Range 2: 6022 to 6231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 35/70(50%) | 0/70(0%) | Plus/Plus |
Query 331 MNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYS 540 M+ +V L F F + + L+ P+V+H VPG+GKS+LIRELI+ D F+AFTAG+ D P+LTG +I+ +S Subject 6022 MDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTGNWIRKWS 6231
Nucleotide Sequence (230 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
171.1 | 898.2 | 26% | 1.591e-42 | 91% | NC_001948 | |
83.3 | 83.3 | 33% | 4.283e-16 | 47% | NC_018714 | |
83.3 | 83.3 | 33% | 4.283e-16 | 47% | NC_003462 | |
83.3 | 83.3 | 33% | 4.283e-16 | 47% | NC_014821 | |
82.0 | 82.0 | 33% | 1.109e-15 | 49% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6659 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(368) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6659 SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6886
Range 2: 6660 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 69/76(91%) | 0/76(0%) | Plus/Minus |
Query 1 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLQNKT**TFL*DYGCLEHLL*KL*SFHPRKLAPLLNYFYHYQAH 228 FGMGPRTAHQNLKNLGRTSTHQVY LSLALHTL+NK * TFL*D GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAH Subject 6660 FGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAH 6887
Range 3: 6689 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 60/66(91%) | 0/66(0%) | Plus/Minus |
Query 2 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPCRIRLNEPSCEITAVWNTCCESYEVFILGN*LPY 199 LVWVREQHIKT*KILDGQVLIKYI+FPWHCTP RIRLN PSCEI AVWNTCCESYE+ ILGN*LPY Subject 6689 LVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY 6886
Range 4: 6660 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Plus |
Query 1 VCLXXXXXXX*GS*FPRMKTS*LSQQVFQTAVISQEGSLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 228 VCLVVVKVV**GS*FPRM+ S*LSQQVFQTA+ISQEG+LSLILQGVQCQGK IYLMSTCPSKIFQVLMCCSRTHTK Subject 6660 VCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTK 6887
Range 5: 6658 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Plus |
Query 3 *CAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*VLFCRVCSARESEYT**VLVXXXXXXX*CAVLGPIP 230 *CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH* LF RVCSARES YT**VLVRPRFFRF*CAVLGPIP Subject 6658 *CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIP 6885
Range 6: 6715 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 52/57(91%) | 0/57(0%) | Plus/Minus |
Query 3 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPAE*DLMNLPVRLRLSGTPAVKAMKF 173 WYGSENSTSKPEKSWTDKYSSSI TFPGTAHP E* LM LPVRL LSGTPAVKAMKF Subject 6715 WYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6885
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6760 to 6987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.3 bits(176) | 0.0 | 36/76(47%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 +VPGSGK++LI++ + + N A T GVP+ N+ G +IK G G +ILDEYLS + +GF+ LFSDPYQ Subject 6760 AVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQ 6987
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6792 to 7019 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.3 bits(176) | 0.0 | 36/76(47%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 +VPGSGK++LI++ + + N A T GVP+ N+ G +IK G G +ILDEYLS + +GF+ LFSDPYQ Subject 6792 AVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQ 7019
Range 1: 6755 to 6982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.3 bits(176) | 0.0 | 36/76(47%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 +VPGSGK++LI++ + + N A T GVP+ N+ G +IK G G +ILDEYLS + +GF+ LFSDPYQ Subject 6755 AVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQ 6982
Range 1: 6572 to 6799 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.0 bits(173) | 0.0 | 37/76(49%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 +VPGSGK++LIRE ++ + AF+ G PD N+ GR+IK +G G ILDEYLS + +GFD FSDP+Q Subject 6572 AVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQ 6799
Nucleotide Sequence (348 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
212.8 | 848.1 | 44% | 1.036e-54 | 53% | NC_001948 | |
57.4 | 183.0 | 32% | 2.464e-18 | 42% | NC_014821 | |
57.4 | 90.6 | 24% | 2.679e-12 | 37% | NC_025388 | |
49.6 | 120.0 | 19% | 6.122e-16 | 39% | NC_009892 | |
57.0 | 91.0 | 22% | 1.964e-12 | 40% | NC_028975 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7010 to 7342 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.8 bits(458) | 0.0 | 86/111(77%) | 0/111(0%) | Minus/Plus |
Query 14 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSTTCKLGQNCHSVDDRLGHWLGAAFPKKVK 346 I+GSPF L VEGVLICFGKEAVDLAVAHNS FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFS C+LG+N +S+D LGHW AAF ++VK Subject 7010 IVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVK 7342
Range 2: 7015 to 7344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 73/110(66%) | 0/110(0%) | Plus/Minus |
Query 12 NLTFLGNAAPSQCPSLSSTE*QFWPNLQVVEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANSNGEP 341 +LT NAA +QCPS S E F PN Q EKA +CMIINF LCLVAAM*NQCLSS VGSLDF +VTT V P TSQG+L ELCATA+STAS PK I TPST++ G+P Subject 7015 DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDP 7344
Range 3: 7026 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 72/110(65%) | 0/110(0%) | Minus/Plus |
Query 1 LS*LWRAS*FVLERRQLIWRLRIIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS 330 L *+ + *+ L RRQ I LR SN+LV+ EV L +*NQEI+P I TG TLL QD R+**SCS+MPFQQPANWAKT+TPLT+GLGIGLVLHFLRKSNLPYS Subject 7026 LH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYS 7355
Range 4: 7010 to 7354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 70/115(61%) | 0/115(0%) | Plus/Minus |
Query 2 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIMRNRQINCLLSKTN*DALHS*LKR*ANN 346 E G+FDFLRKCST PMPKP VNGV V AQFAGC*KGI LHDYQ L +SC SNV+PV I+ G IS*FQ ++K TS TR FE ++RN +I+CLL+K * + * KR +N Subject 7010 E*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHN 7354
Range 5: 7050 to 7343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 52/98(53%) | 0/98(0%) | Plus/Minus |
Query 13 I*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SWNYAQPPNQLPPFQNKL 306 I*L +MQH+ NAQA Q S F PI RLLKRH TA*LS S VL QQC+TSAY DLLIS + +L HK +* + AQ + LPP+Q+ L Subject 7050 I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSIL 7343
Range 6: 7051 to 7278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 40/76(53%) | 0/76(0%) | Minus/Plus |
Query 78 NLFWKGGS*FGGCA*FQLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFNNLQIGPK 305 N+ W GGS CA +Q +L* R + * + EIKRS+ *ALVLHCC KT E+DNHAV+CLF++L+IG K Subject 7051 NMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQK 7278
Range 1: 7139 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 21/42(50%) | 0/42(0%) | Minus/Plus |
Query 191 EGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSR 316 EG +IC KE D H+ +KLPC+VRGATFD VT + + Subject 7139 EGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 2: 7347 to 7451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 17/35(49%) | 0/35(0%) | Minus/Plus |
Query 7 MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLP 111 MPF QP +++K+V P+ IG + LVL L +S LP Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLP 7451
Range 3: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 8/15(53%) | 0/15(0%) | Minus/Plus |
Query 119 FYIAATRHRKKLIIM 163 +Y+A TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 4: 7126 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 28/67(42%) | 0/67(0%) | Plus/Minus |
Query 129 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANS 329 N LCLV+A ++ + KVT S VAPRT QG+L C KS+ SF +QI PS + S Subject 7126 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS 7326
Range 1: 6598 to 6756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 20/53(38%) | 0/53(0%) | Minus/Plus |
Query 188 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRD 346 I + FE ++E ++C+ KE DL H +++K C++RG+TFD+VT + S + Subject 6598 IFETVFEGSIEDQIVCYEKEVFDLLDRHGADYKKDCQIRGSTFDIVTFITSSE 6756
Range 1: 6923 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 19/49(39%) | 0/49(0%) | Minus/Plus |
Query 200 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLL 346 I + F +EG +IC K D ++ ++LPC+VRG+TF+VVT + Subject 6923 IFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Asian prunus virus 3 isolate Nanjing, complete genome
Nucleotide Sequence (593 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
445.1 | 2398.2 | 39% | 2.633e-124 | 93% | NC_001948 | |
286.5 | 650.0 | 33% | 1.399e-76 | 28% | NC_009892 | |
287.4 | 703.8 | 59% | 7.411e-77 | 29% | NC_028975 | |
285.6 | 704.6 | 46% | 2.64e-76 | 32% | NC_025388 | |
283.3 | 567.7 | 29% | 1.292e-75 | 33% | NC_012038 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5165 to 5749 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
445.1 bits(965) | 0.0 | 188/195(96%) | 0/195(0%) | Plus/Minus |
Query 2 LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*L 586 LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLR KL +RF+KHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGS NLGLRKFETLSDSH+EGY*IISFMPWVNAFKPLTCIAQLLTSST MLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*L Subject 5165 LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*L 5749
Range 2: 5165 to 5749 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
432.2 bits(937) | 0.0 | 189/195(97%) | 0/195(0%) | Minus/Plus |
Query 2 ESECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ 586 ESECSNEEWFKTHIPLSNLESTRAR VGKMALKEYREVRCGYE+TQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHN IMF EAV+EFEAK+ASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ Subject 5165 ESECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ 5749
Range 3: 5163 to 5579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.9 bits(731) | 0.0 | 129/139(93%) | 0/139(0%) | Plus/Minus |
Query 172 QTPAPLHQT*WDYDWLSMGFWIGKNLIRISHMVWPASVWQPQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHLYAHQRTVESLHNHNAPPDTLSRPFYPPSWPWLTPNYSGGCGF*TILHLSILTP 588 QTP PLH+T*W+YDWLSMGFWIGKNLIRISHMVWPASVWQ QPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFH YAHQR VES HNHNAPPDTLSRPFYPP+WPWLTP+YS GCGF*TILHLSILTP Subject 5163 QTPVPLHET*WNYDWLSMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTP 5579
Range 4: 5626 to 5748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 40/41(98%) | 0/41(0%) | Plus/Minus |
Query 3 WKQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP 125 WKQARVCPALATLSLLSNLVQCCDFIKIRATSN+QSLHDLP Subject 5626 WKQARVCPALATLSLLSNLVQCCDFIKIRATSNNQSLHDLP 5748
Range 5: 5257 to 5748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.6 bits(750) | 0.0 | 153/164(93%) | 0/164(0%) | Minus/Plus |
Query 3 LERVSGGALWL*SDSTVL**A*RWNW*ATEQCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*GCQTEAGQTIWEILIRFFPIQNPIESQS*SHHV**SGAGV*SEGG**ECSNYRESCR*VMQGLAIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLP 494 LERVSGGALWL*+DST+L**A* WNW*ATEQCM*EV*KHLPKA*RK*FNNLP+GCPKASQIFEAPG* CQTEAGQTIWEILIRFFPIQNPIESQS* HHV *SG GV* E G**ECSNYRESCR*VMQGL IRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLP Subject 5257 LERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLP 5748
Range 6: 5164 to 5208 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 15/15(100%) | 0/15(0%) | Minus/Plus |
Query 543 GVRMLK*RMV*NPHP 587 GVRMLK*RMV*NPHP Subject 5164 GVRMLK*RMV*NPHP 5208
Range 7: 5166 to 5690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
350.2 bits(758) | 0.0 | 167/175(95%) | 0/175(0%) | Minus/Plus |
Query 61 SQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNSSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLRLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCLMKRCGSLKXXXXXXXXXXXRIMQVGHAGIGY*MLL*FL*SHNTV 585 SQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LN+SLMSI VELVSN*AMHVRGLKAFTQGIKEMIQ*PS WLSESVSNFRSPRL+LPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSC MKR SL+RRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTV Subject 5166 SQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMKRYRSLRRRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTV 5690
Range 8: 5164 to 5577 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 130/138(94%) | 0/138(0%) | Plus/Minus |
Query 174 NSRTASSNMMGL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHAXXXXXXXXXXXXXKNC*VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSSFEHSDS 587 NS TAS NMM L*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTA+RKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*V S*PQRTSRYSFKAILPT LALVDS+LL+GMWVLNHSSFEHSDS Subject 5164 NSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNHSSFEHSDS 5577
Range 1: 5069 to 5647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
286.5 bits(619) | 0.0 | 126/193(65%) | 0/193(0%) | Minus/Plus |
Query 2 ECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ 580 E E+WFKTHIP+ LE+ RAR V K+ KE RE R G+EVT+QF DEH G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL +FL IPL H+ + +AV +FE K+ SKSAATIENH+GRS RDW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQ Subject 5069 EIIQEDWFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQ 5647
Range 2: 5248 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 32/59(54%) | 0/59(0%) | Plus/Minus |
Query 225 GILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHA 401 GI RK +N P G+A L+LA S G+E F TAIR V ES PLCLG*++S LS A Subject 5248 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAA 5424
Range 3: 5438 to 5647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 29/70(41%) | 0/70(0%) | Plus/Minus |
Query 2 LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIM 211 L+ S+GLPS SKP+VK S L H+N + PIPA M+ C TL L FK+ F IM Subject 5438 LKTSQGLPSLCTSKPIVKLSAELGFHEN*CFVDWPIPARTP*MVFNGCSTLAEFLLFKIIDSF*HEIAIM 5647
Range 4: 5080 to 5205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 24/42(57%) | 0/42(0%) | Plus/Minus |
Query 444 NC*VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSS 569 NC VTS*P S SF +IL T LAL S+ GM VLN SS Subject 5080 NCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLNQSS 5205
Range 5: 5078 to 5395 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 35/106(33%) | 0/106(0%) | Plus/Minus |
Query 254 EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI 571 EF W P F + N L + E +SH E + + MP +N+F P +C+ L +M + +LLSH +T L +F HPP P L+ +V F+P F+ Subject 5078 EFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFL 5395
Range 6: 5524 to 5643 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 24/40(60%) | 0/40(0%) | Plus/Minus |
Query 6 KQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP 125 KQA+VCPA A + LSNLVQ DF+KI A S QSL + P Subject 5524 KQAKVCPAFALRNRLSNLVQSWDFMKISALSTGQSLLERP 5643
Range 7: 5497 to 5631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 19/45(42%) | 0/45(0%) | Minus/Plus |
Query 18 ECSNYRESCR*VMQGLAIRCCSDFYEVTTLY*I*QQA*SS*SWAN 152 EC N+ + R QGLA R ++F+E+ TL+*+*Q WAN Subject 5497 ECCNH*KPFRAF*QGLASRQSTNFHEIPTLH*V*QSVSKCKGWAN 5631
Range 8: 5130 to 5399 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 25/90(28%) | 0/90(0%) | Minus/Plus |
Query 250 GPGGWVKWP*KSIGRCVVVMK*LNSSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLRLPN*GGPNHMGNSY 519 G GG +K+ + + +VM+*L++ +I + ++G K F +GI+ S WL S + L++ N*G H NS+ Subject 5130 GQGGCIKYLQRKLESLGLVMR*LSNLSTNIAKIQANRSPTQLKGTKLFIRGIRAPTLSRS*WLLRKGSLSPNQVLKVLN*GELCHSANSF 5399
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 4754 to 5329 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.4 bits(621) | 0.0 | 127/192(66%) | 0/192(0%) | Minus/Plus |
Query 5 ECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACF 580 E NE WFKTH+PL LES RA V ++ KEYREVRCG E T QF D+H + L+NA ERFE+IYPRH+G+DS+TFLMAV+KRL FS+P VE+AKL RAKPYGKFLL+ FL +IPLK + +F A REFE K+ SKSAA IENH+GRSCRDWL DV IFMKSQ C+K+DNR R AKAGQTLACF Subject 4754 EVKNEPWFKTHLPLFELESIRAGWVHRIMNKEYREVRCGSETTAQFPDDHPNRSKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSRPSVESAKLNRAKPYGKFLLNEFLKRIPLKGGLDSALFSRAKREFEEKKTSKSAAVIENHSGRSCRDWLADVGFIFMKSQFCSKWDNRFRDAKAGQTLACF 5329
Range 2: 4762 to 5115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 66/118(56%) | 0/118(0%) | Plus/Minus |
Query 219 FNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHAXXXXXXXXXXXXXKNC*VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSSF 572 F+GIL R NKNFP GLA SLA ST G E L F TAI+KV ES PLCLG*M SNLS A SS NC V S PQRTS YS I T AL+DS +G VLN SF Subject 4762 FSGILFRNSFNKNFP*GLALFSLADSTDGREKLSLFFTAIKKVTESLPLCLG*MASNLSAAFAKVILDLFGWSSGNCAVVSEPQRTSLYSLFIIR*THPALIDSSSNKGRCVLNQGSF 5115
Range 3: 5153 to 5332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 27/60(45%) | 0/60(0%) | Plus/Minus |
Query 2 LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLP 181 ++ S+GLP FS SK +V T L LHK +S+I *PIPA* + +I T FK P Subject 5153 MKTSQGLPRFSISKSIVPL*TELALHKYESDIS*PIPA*ASRVIFNYSSAFTCFFFFKFP 5332
Range 4: 4743 to 5084 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 36/114(32%) | 0/114(0%) | Plus/Minus |
Query 250 IRISHMVWPASVWQPQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHLYAHQRTVESLHNHNAPPDTLSRPFYPPSWPWLTPNYSGGCGF*TILHLSILTPV 591 I+ H VWP S WQ + K +F P + +H+LYA + Q +H L HQ TV + N P T F P LTP G F*T H + P+ Subject 4743 IKTFHKVWPYSAWQIRQTVEKSLASFSLPLKK*RSHYLYAWDRWPQIFQLHLPRLFWTCLDGHQETVLLSRSRNGLPCTPCSLFDEPIQL*LTPVQIKGDVF*TRAHF*LPPPI 5084
Range 5: 5209 to 5328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 24/40(60%) | 0/40(0%) | Plus/Minus |
Query 6 KQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP 125 KQARVCPALA+L+ LS+ Q FI + TS SQSLH+ P Subject 5209 KQARVCPALASLNRLSHFEQNWLFINMNPTSASQSLHERP 5328
Range 6: 4763 to 5083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 31/107(29%) | 0/107(0%) | Plus/Minus |
Query 251 *EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI 571 *+ I FGP Q G + RK L H + + + MP ++ K +CI Q M+I++L T P+L + +P *LQ ++ FKP I Subject 4763 *KLSIRFGPIQLGRFDRRSRKA*PLFHCH*KSDGVTTSMPGIDGLKSFSCICQGYFGPVWMVIRKLCCCLGAATDFPVLLVHYSMNPSSSD*LQFK*REMCFKPGLI 5083
Range 7: 5214 to 5327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 16/38(42%) | 0/38(0%) | Plus/Minus |
Query 7 SKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLIANPCMT 120 +K G A L* L* C + +S* +H +ANPCM+ Subject 5214 NKPGSAPL*HL*IDCPTLNRIGSS*I*IRHQLANPCMS 5327
Range 8: 4930 to 5085 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 20/52(38%) | 0/52(0%) | Minus/Plus |
Query 249 QCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*GCQTEAGQTIWEILI 404 +C *++* HL +A*R * + G K +++F CQ E GQT+W++ I Subject 4930 KCS*KI*GHLSQA*R**LRHFFNGSEKEAKLFSTVCRICQAE*GQTLWKVFI 5085
Range 1: 4754 to 5329 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.6 bits(617) | 0.0 | 124/192(65%) | 0/192(0%) | Minus/Plus |
Query 5 ECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACF 580 E +E WFKTH+PL LES RA V ++ +EYREVRCG E T QF D+H G L+NA ERFE+IYPRH+G+DS+TFLMAV+KRL FS+P E+AKL RAKPYGKFL+ FL +IPL+ + +PI+F +A R+FE K+ SKSAA IENH+GRSCRDWL DV IFMKSQ C+K+DNR R AKAGQTLACF Subject 4754 EVKHEPWFKTHLPLFELESIRASWVHRIMNREYREVRCGSETTTQFPDDHPSGAKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSQPSKESAKLNRAKPYGKFLVSEFLKRIPLRGNLDPILFAKAKRDFEEKKTSKSAAVIENHSGRSCRDWLADVGFIFMKSQFCSKWDNRFRDAKAGQTLACF 5329
Range 2: 4933 to 5148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 40/72(56%) | 0/72(0%) | Plus/Minus |
Query 186 ASSNMMGL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHA 401 A + +G L NGIL R +NFP G A SLA S G+E L F TAIRKV ES PLCLG M SNLS A Subject 4933 AFAKRIGSRLPLNGILLRNSLTRNFP*GFALFSLADSFDGWEKLSLFLTAIRKVTESLPLCLGYMASNLSAA 5148
Range 3: 4765 to 4881 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 26/39(67%) | 0/39(0%) | Plus/Minus |
Query 453 VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSS 569 V S PQRTSRYS IL T LAL+DS RG WVLNH S Subject 4765 VVSEPQRTSRYSRFIIL*TQLALMDSNSKRGRWVLNHGS 4881
Range 4: 5209 to 5328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 22/40(55%) | 0/40(0%) | Plus/Minus |
Query 6 KQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP 125 KQA+VCPA A+L+LLS+L Q FI ++ TS +QS H+ P Subject 5209 KQAKVCPAFASLNLLSHLEQNWLFINMKPTSANQSRHERP 5328
Range 5: 4763 to 5080 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 39/106(37%) | 0/106(0%) | Plus/Minus |
Query 254 EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI 571 E P+ F P Q G L L K + D H +G *I S +PWV FK L CI Q S ++I++L F T THL I + +P Q + +GF+P+F+ Subject 4763 ELPVGFRPVQLGRLL*WLGKTQPFFDCH*KGD*ITSPVPWVYGFKSLCCICQSNFRSAGVIIRKLSCGF*TATHLTIFSIHYPVNPACSNGFQFKKRQMGFEPWFM 5080
Range 6: 5108 to 5332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 29/75(39%) | 0/75(0%) | Plus/Minus |
Query 2 LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIMTGFQW 226 ++AS LP K VV T L LHK ++NI PIPA T MI CT L K+ K D + QW Subject 5108 VKAS*SLPCLCIPKSVVPLGTELALHKYETNIGQPIPARTTRMIFNYSCTFACFLFLKVSLCLRKEDRVQIAPQW 5332
Range 7: 4752 to 5273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 56/174(32%) | 0/174(0%) | Minus/Plus |
Query 61 QNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNSSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLRLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCLMKRCGSLKXXXXXXXXXXXRIMQVGHAGIGY*MLL*FL*SHNTV 582 + + M +G KP + W+ G+ ++I RCV V K + LM E M R LK +TQG E+IQ P W S+ F + + LP+* G N G+S *+ + H* + S L ++ +L++R+ +VQ +I+ V AGIG+ ML+ +L* ++V Subject 4752 RRSNMNHGSKPICLFLNWNPLEQAGFTG**IENIVRCVAVQKPQLNFLMITPAERKLLWQMQQRDLKPYTQGTGEVIQSPF*WQSKKG*VFPNHQRSLPS*TGRNPTGSSL*VSFLKEYH*GAIWTLSSLRRQRETLRKRKQAKVQL*LKIILVVRAGIGWPMLVSYL*RASSV 5273
Range 8: 4930 to 5124 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 25/65(38%) | 0/65(0%) | Minus/Plus |
Query 210 QCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*GCQTEAGQTIWEILIRFFPIQNPIESQS 404 +C E+* H+PKA K*F++L G K ++ F CQ E G+T+ E+ +N IE QS Subject 4930 KCSREI*SHIPKAQGK*FSHLSNGSQKKAEFFPTIKGVCQAEQGETLREVPCE*VS*KNTIEGQS 5124
Range 1: 4562 to 5128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.3 bits(612) | 0.0 | 124/189(66%) | 0/189(0%) | Minus/Plus |
Query 2 EEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ 568 E WFKTH+PL +ES RA V KE REVR GY V+ QF DEH G+ L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL A+ YGK+LLD+FL +PLKA HNP +VR+FE K+ SKSAATIENH+GRSCRDWL DV LIFMKSQ CTKFDNR RVAKA Q++ CFQ Subject 4562 EPWFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQ 5128
Range 2: 4729 to 4926 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 39/66(59%) | 0/66(0%) | Plus/Minus |
Query 204 GL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHA 401 GL AFNG +K S++ FP LA SLA ST G ENL+RF TAIRKV S LCLG*M S S A Subject 4729 GLCWAFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAA 4926
Range 3: 4907 to 5128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 33/74(45%) | 0/74(0%) | Plus/Minus |
Query 2 LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIMTGFQ 223 LEA+ L SF +++ VV+F L LHK + +I *PIP + M+ Y CCTLT LL F++ H I+ GFQ Subject 4907 LEANYRLRSFGHTESVVEFGANLGLHKYKPHIC*PIPTRASRMVFYCCCTLTCLLFFEISHTPGHEFRIVLGFQ 5128
Range 4: 4561 to 4677 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 18/39(46%) | 0/39(0%) | Plus/Minus |
Query 453 VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSS 569 +T *P RTS +SF T A S RG VLNH S Subject 4561 LTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNHGS 4677
Range 5: 4562 to 4840 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 31/93(33%) | 0/93(0%) | Plus/Minus |
Query 290 SLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFF 568 +LN RK L HK+ I F+PWVN FK L+ I + + +LI +L++H I H + F P +T+G+V F+P+F Subject 4562 ALNHRFRKS*ALLHGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPWF 4840
Nucleotide Sequence (449 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
330.5 | 1826.1 | 40% | 5.472e-90 | 91% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1670 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.5 bits(715) | 0.0 | 143/149(96%) | 0/149(0%) | Minus/Plus |
Query 2 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS 448 LEATGQSKLFRFLVDDC MREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDC+VIKVYQ VTSQAILPEALLSLTKVFVRDSDSKGVSIP LVSRNEL ELA PANSALEEPQSVDCNAGRVQASVSSS Subject 1670 LEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSS 2116
Range 2: 1671 to 2117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 140/149(94%) | 0/149(0%) | Plus/Minus |
Query 1 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRPIWEWKHPLSQNP*QKLWSS*AEPQEVLPVMLQTDKL**HHNQDQQRTMPCPSEI*GWTFA*GETIGGHKN*NNE*GLLCA*KGPPYRNFLPHA*HSRPPKT*TILTAQWLL 447 GNLKRLLEPCLH NQLIEAPQGLN*LGELV LAHFSRPIWEWKHPLSQNP*Q+LWSS*AEPQEVLPVMLQ DKL** HNQDQQRTMPCPSEI*GWTFA*G TIGGHKN*+NE*GLLCA*KGPPYRNF PHA*HSRPPKT*TILTAQ LL Subject 1671 GNLKRLLEPCLHYNQLIEAPQGLN*LGELVPLAHFSRPIWEWKHPLSQNP*QRLWSS*AEPQEVLPVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN*SNE*GLLCA*KGPPYRNF*PHA*HSRPPKT*TILTAQ*LL 2117
Range 3: 1670 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
318.1 bits(688) | 0.0 | 137/149(92%) | 0/149(0%) | Plus/Minus |
Query 2 GT*NACLNPACIAIN*LRLLKG*ISWES*FI*LISRDQYGNGNTL*VRIPDKNFGQAKQSLRKYCL*CYKLINFDDITIKISKGRCPVLQKFEVGPLPKEKPLEATRIKTMSEGFYVLKKAHLIGTSYLTHNTVVHQKPEQF*LPSGF* 448 GT*NACLNPACI IN*LRLLKG*ISW S*F+*LISRDQ GNGNTL*VRIPDK+FGQAKQSLRKYCL*CYKLINFD++TIKISKGRCPVLQKFEVGPLPKE+PLEATRIK MSEGFYVLKKAHLIGTS LTH+TVVHQKPEQF*LPS F* Subject 1670 GT*NACLNPACITIN*LRLLKG*ISWVS*FL*LISRDQSGNGNTL*VRIPDKDFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LPSSF* 2116
Range 4: 1671 to 2117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.1 bits(677) | 0.0 | 138/149(93%) | 0/149(0%) | Minus/Plus |
Query 1 *KPLGSQNCSGFWWTTVLCVR*EVPIRWAFLST*KPSLIVLILVASNGFSLGKGPTSNF*RTGHRPLLILIVMSSKFISL*HHRQYFLRLCLA*PKFLSGILTQRVFPFPYWSREMS*MN*LSQLIQPLRSLNQLIAMQAGFKQAFQVP 447 *K LGSQNCSGFWWTTVLCVR EVPIRWAFLST*KPSLI LILVASNG SLGKGPTSNF*RTGHRPLLILIV SKFISL*HHRQYFLRLCLA*PK LSGILTQRVFPFP WSREMS* N*L+QLIQPLRSLNQLI MQAGFKQAFQVP Subject 1671 *KLLGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSLSGILTQRVFPFPDWSREMS*RN*LTQLIQPLRSLNQLIVMQAGFKQAFQVP 2117
Range 5: 1669 to 2079 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 131/137(96%) | 0/137(0%) | Plus/Minus |
Query 39 QSTD*GSSRAELAGRASSFSSFLETNMGMETPFESESLTKTLVKLSRASGSIACDVTN**TLMTSQSRSAKDDALSFXXXXXXXXXXXXHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 449 QSTD*GSSRAELAG ASS SSFLETN+GMETPFESESLTKTLVKLSRASGSIACDVT+**TL+TSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRI QSSTKNLNNFDCPVASS Subject 1669 QSTD*GSSRAELAG*ASSSSSFLETNLGMETPFESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASS 2079
Range 6: 1669 to 2031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 110/121(91%) | 0/121(0%) | Minus/Plus |
Query 87 ARSHWAVKIVQVFGGRLCYA*GKKFL*GGPF*AHKSPHSLF*FLWPPMVSP*AKVQPQISEGQGIVLC*S*L*CHQSLSVCNITGNTS*GSA*LDQSFCQGF*LKGCFHSHIGLEK*AK*T 449 ARS+WAVKIVQVFGGRLCYA*G KFL*GGPF*AHKSPHSL *FLWPPMV P*AKVQPQISEGQGIVLC*S*L* +QSLS CNITGNTS*GSA*LDQS CQGF*LKGCFHS IGLEK*A+ T Subject 1669 ARSYWAVKIVQVFGGRLCYA*G*KFL*GGPF*AHKSPHSLL*FLWPPMVPP*AKVQPQISEGQGIVLC*S*L*GYQSLSACNITGNTS*GSA*LDQSLCQGF*LKGCFHSQIGLEK*ARGT 2031
Nucleotide Sequence (561 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
437.7 | 2365.3 | 40% | 3.953e-122 | 91% | NC_001948 | |
75.3 | 125.4 | 24% | 2.726e-22 | 34% | NC_014821 | |
75.8 | 196.3 | 19% | 1.458e-22 | 29% | NC_003462 | |
89.5 | 126.8 | 23% | 1.067e-22 | 29% | NC_009892 | |
73.9 | 169.5 | 32% | 3.728e-22 | 38% | NC_018714 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3035 to 3580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
437.7 bits(949) | 0.0 | 178/182(98%) | 0/182(0%) | Minus/Plus |
Query 11 VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 556 +ETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLV+PDLSAPAISKQLEENAYAENEMIALFCIR+HVR IVITPEYEVSWKFGEGEWPLCGILCLKSN Subject 3035 IETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSN 3580
Range 2: 3035 to 3580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
410.2 bits(889) | 0.0 | 172/182(95%) | 0/182(0%) | Plus/Minus |
Query 11 I*FKAKNSA*GPLTFPEFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIHQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 556 I*FKAKNS *GPLTFPEFPTNFIFWCDHY YVVPNAE*CDHLILGISILFQLFRN WG*KIW +QALTLH+RSNTGL*GKSISAK KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYL GSGK*AF*TVNPQPASGSNWGLVRYYKN TFLHLLNVKVPFENFKRPQDFWTIICFY Subject 3035 I*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFY 3580
Range 3: 3037 to 3588 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
407.0 bits(882) | 0.0 | 174/184(95%) | 0/184(0%) | Minus/Plus |
Query 3 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGESRSFSPSHF*TIGRECLCRE*DDRIILHSVPRKTHSDHTRI*S*LEIRGR*VAPMRNSLP*IKSLP 554 RNRLWSKSPGVF*SFQRGLSH*EDGGRF+FCNNVQGPN*IHWQVEGSQFRMLIFRIQ GIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFF *H*WTCPKGRYSIF GE*ALG+SRSFSPS+F*TIGRECLCRE*DDRIILHS PRK +SDHTRI*S*LEIRGR*VAPM NSLP*IKSLP Subject 3037 RNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLP 3588
Range 4: 3117 to 3590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
357.1 bits(773) | 0.0 | 149/158(94%) | 0/158(0%) | Plus/Minus |
Query 1 VGSDLI*GKEFRIGATHLPRISN*LHILV*SL*VLRGTECRIMRSSHSRHKHSLPIV*KWLGLKDLDSPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 474 VGSDLI*GKEF IGATHLPRISN*LHILV*SL* LRG ECRIMRSSHSRHKHSLPIV*K LGLKDLD PSAHSP+KIEYRPLGQVHQC* KNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIP WIRKMSILNCEPSTCQWI*LGPCTLLQK N Subject 3117 VGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLN 3590
Range 5: 3036 to 3074 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 13/13(100%) | 0/13(0%) | Plus/Minus |
Query 517 QKTPGLLDHNLFL 555 QKTPGLLDHNLFL Subject 3036 QKTPGLLDHNLFL 3074
Range 6: 3291 to 3587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.6 bits(449) | 0.0 | 90/99(91%) | 0/99(0%) | Minus/Plus |
Query 4 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*DS**SHQNMKLVGNSGKVSGPYAEFFALNQIAA 300 AIAFGILLVF LALMDLP*RPVFDL WRVSAW*+QIFQPQ FLNNWKRMLMPRMR*SHYSAFGTT* **SHQNMKLVGNSGKVSGPY EFFALNQI + Subject 3291 AIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITS 3587
Range 7: 3036 to 3242 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 67/69(97%) | 0/69(0%) | Minus/Plus |
Query 349 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 555 *KQIMVQKSWGLLKFSKGTFTLRRWRKV FL**RTRPQLDPLAG*GFTVQNAHFPDP+RYC*AARLRHV Subject 3036 *KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHV 3242
Range 8: 3037 to 3423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.2 bits(566) | 0.0 | 126/129(98%) | 0/129(0%) | Plus/Minus |
Query 168 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 554 CLE+AGAERSG TKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITK+EPSSIFLM*KSPLKTSKDPRTFGP*SVS Subject 3037 CLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVS 3423
Range 1: 3193 to 3474 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 32/94(34%) | 0/94(0%) | Minus/Plus |
Query 188 IFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLS 469 + + K + G LR H EC S E L GC + ++ D +++F V DGNCFWHSVG L+ DG +K + + + + P LS Subject 3193 VVIAFLKPKMTQGGELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLS 3474
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3228 to 3470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 33/81(41%) | 0/81(0%) | Minus/Plus |
Query 188 GRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLS 430 G LR H EC S E L GC + ++ D F++F V DGNCFWHSVG L+ DG LK + + + + P LS Subject 3228 GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLS 3470
Range 2: 3450 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 20/45(44%) | 0/45(0%) | Minus/Plus |
Query 59 LSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKF 193 + P +SKQLE N +AE E +A FC Y +RL V+ E +W F Subject 3450 VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIF 3584
Range 3: 3215 to 3415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 26/67(39%) | 0/67(0%) | Plus/Minus |
Query 243 FRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLI 443 F+ SPS PTECQKQ PS T K K S S P + S+ +N HS * + P +I Subject 3215 FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHSSS*DRSSPPSVI 3415
Range 1: 3059 to 3283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 34/75(45%) | 0/75(0%) | Minus/Plus |
Query 230 YKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIR 454 YK + +LR H+ EC S E L GC + ++ D+F+ F VPGDGNCFWHSVG L+ DG+ LK +R Subject 3059 YKPRLGKGMQLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLKGILR 3283
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3229 to 3417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 30/63(48%) | 0/63(0%) | Minus/Plus |
Query 242 GRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALK 430 G LR H EC S E L GC + ++ D F++F V DGNCFWHSVG L+ DG LK Subject 3229 GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK 3417
Range 2: 3430 to 3585 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 20/52(38%) | 0/52(0%) | Minus/Plus |
Query 59 ERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKF 214 ++ + + P +SKQLE N +AE E +A FC Y +RL V+ E +W F Subject 3430 DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIF 3585
Range 3: 3216 to 3416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 26/67(39%) | 0/67(0%) | Plus/Minus |
Query 243 FRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLI 443 F+ SPS PTECQKQLPS T K K S S P + S+ ++ HS L+ P +I Subject 3216 FKYSPSTPINGPTECQKQLPSASTSKEWKRSGSNFLLNMTEHP*SFSVRSDSSHSSSWDLSSPPSVI 3416