Queries
Nucleotide Sequence (117 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
92.3 | 397.1 | 50% | 3.648e-18 | 95% | KX274275.1 | |
90.4 | 327.8 | 38% | 1.297e-17 | 87% | AB277783.1 | |
84.5 | 318.1 | 36% | 8.057e-16 | 89% | AY368590.1 | |
80.3 | 258.1 | 34% | 1.407e-14 | 66% | AB277788.1 | |
80.3 | 269.6 | 34% | 1.407e-14 | 68% | KR054734.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5
Range 1: 6550 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 36/38(95%) | 0/38(0%) | Plus/Minus |
Query 2 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 115 N MN+NWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* Subject 6550 NAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 6663
Range 2: 6550 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 38/38(100%) | 0/38(0%) | Minus/Plus |
Query 2 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 115 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV Subject 6550 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 6663
Range 3: 6549 to 6659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 36/37(97%) | 0/37(0%) | Minus/Plus |
Query 6 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCRS* 116 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSC S* Subject 6549 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCS* 6659
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 4
Range 1: 806 to 919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 35/38(92%) | 0/38(0%) | Plus/Minus |
Query 2 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 115 N +N+NWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* Subject 806 NAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 919
Range 2: 806 to 919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 36/38(95%) | 0/38(0%) | Minus/Plus |
Query 2 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 115 LS+WHGVIIMNNLVKALSTFEFVG+YSVLRFPVVVHSV Subject 806 LSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSV 919
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 4
Range 1: 6550 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 34/38(89%) | 0/38(0%) | Plus/Minus |
Query 2 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 115 N MN+NWKSEHAINTHKLKRRQSFN*VIHNN MPNT* Subject 6550 NAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT* 6663
Range 2: 6550 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 36/38(95%) | 0/38(0%) | Minus/Plus |
Query 2 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 115 LSVWH IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV Subject 6550 LSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 6663
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1
Sequence ID: AB277788.1 Length: 2876 Number of Matches: 4
Range 1: 806 to 919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 33/38(87%) | 0/38(0%) | Minus/Plus |
Query 2 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 115 LSVWHGV IMNNLVKALS FEFVGV+ VL+FPVVVHSV Subject 806 LSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSV 919
Range 2: 806 to 919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 25/38(66%) | 0/38(0%) | Plus/Minus |
Query 2 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 115 NT+N+NWK ++ + +K KRRQSF+*VIHN HTMPNT* Subject 806 NTVNNNWKFKYTKHANKFKRRQSFD*VIHNTHTMPNT* 919
Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome
Sequence ID: KR054734.1 Length: 8753 Number of Matches: 4
Range 1: 6550 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 33/38(87%) | 0/38(0%) | Minus/Plus |
Query 2 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 115 LSVWHGV IMNNLVKALS FEFVGV+ VL+FPVVVHSV Subject 6550 LSVWHGVSIMNNLVKALSAFEFVGVFRVLKFPVVVHSV 6663
Range 2: 6550 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 26/38(68%) | 0/38(0%) | Plus/Minus |
Query 2 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 115 NT+N+NWK ++ +T+K KRRQSF+*VIHN HTMPNT* Subject 6550 NTVNNNWKFKYTKHTNKFKRRQSFD*VIHNTHTMPNT* 6663
Nucleotide Sequence (199 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
154.2 | 712.1 | 26% | 1.571e-36 | 72% | AY368590.1 | |
153.8 | 844.5 | 26% | 2.154e-36 | 89% | KX274275.1 | |
135.1 | 348.6 | 45% | 8.513e-31 | 41% | KR054735.1 | |
131.4 | 346.1 | 52% | 1.066e-29 | 40% | AY881627.1 | |
130.1 | 340.7 | 52% | 2.751e-29 | 37% | KX274277.1 |
Alignments
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7
Range 1: 3238 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.2 bits(332) | 0.0 | 63/66(95%) | 0/66(0%) | Minus/Plus |
Query 1 SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN 198 SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS+PTIRKQLGEN Subject 3238 SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSNPTIRKQLGEN 3435
Range 2: 3237 to 3434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.1 bits(309) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Minus |
Query 2 FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD 199 FSPSCFR+VG ERA STGDSLSTNDLIPAFKA PSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD Subject 3237 FSPSCFRIVGFERAGSTGDSLSTNDLIPAFKARPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD 3434
Range 3: 3238 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 50/66(76%) | 0/66(0%) | Plus/Minus |
Query 1 IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 198 IF+KLLPY W KS IN *FTFH+RPYS LQS ++ A+KK N*VPKAVTITRHRKSVEVFNF++S* Subject 3238 IFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS*TICAKKKTN*VPKAVTITRHRKSVEVFNFKVS* 3435
Range 4: 3239 to 3433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 50/65(77%) | 0/65(0%) | Plus/Minus |
Query 3 FLQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL 197 F QVASV LG KEL+Q VIHFP+TTLF PSK C*EE+QLSAKSS+HHQAQEKC*SLQF++QL Subject 3239 FHQVASV*LGLKELDQPVIHFPQTTLFPPSKLDHLC*EENQLSAKSSYHHQAQEKC*SLQFQSQL 3433
Range 5: 3239 to 3433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 50/65(77%) | 0/65(0%) | Minus/Plus |
Query 3 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTDWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK 197 QL KLKTSTLFLCLVMVTAFGTQL FF A L*R+E*GR WKVNH+LIQLF+ Q YGSNL K Subject 3239 QLTLKLKTSTLFLCLVMVTAFGTQLVFFLAQMV*L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVK 3433
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7
Range 1: 3238 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.8 bits(331) | 0.0 | 63/66(95%) | 0/66(0%) | Minus/Plus |
Query 1 SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN 198 SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS PTIRKQLGEN Subject 3238 SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSGPTIRKQLGEN 3435
Range 2: 3238 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 63/66(95%) | 0/66(0%) | Plus/Minus |
Query 1 IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 198 IF+KLLPYGWARKS INW*FTFHERPYSCLQSQ+VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* Subject 3238 IFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 3435
Range 3: 3239 to 3433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 63/65(97%) | 0/65(0%) | Minus/Plus |
Query 3 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTDWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK 197 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT WL*RQE*GRSWKVNHQLIQLFRAQPYGSNL K Subject 3239 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVK 3433
Range 4: 3237 to 3434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.5 bits(310) | 0.0 | 62/66(94%) | 0/66(0%) | Plus/Minus |
Query 2 FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD 199 FSPSCFRMVG ERA STGDSLSTNDLIPAFKA PSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD Subject 3237 FSPSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD 3434
Range 5: 3239 to 3433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 60/65(92%) | 0/65(0%) | Plus/Minus |
Query 3 FLQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL 197 F QVASVWLG KEL+QLVIHFPRTTLFLPSKP RRC*EESQLSAKSS+HHQAQEKC*SLQFRNQL Subject 3239 FHQVASVWLGPKELDQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSYHHQAQEKC*SLQFRNQL 3433
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 4
Range 1: 3238 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.1 bits(290) | 0.0 | 55/66(83%) | 0/66(0%) | Minus/Plus |
Query 1 SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN 198 SAD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESES VDS SSP I +QLGEN Subject 3238 SADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESLVDSTFSSPIISRQLGEN 3435
Range 2: 3237 to 3434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(252) | 0.0 | 49/66(74%) | 0/66(0%) | Plus/Minus |
Query 2 FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD 199 FSPSC M+GLE+ EST DSLSTN+ +PAFKA+PSVL + PTECQKQ PSPGT KVLKSSIS SA+ Subject 3237 FSPSCLEMIGLEKVESTNDSLSTNERMPAFKASPSVLSKNPTECQKQLPSPGTEKVLKSSIS*SAE 3434
Range 3: 3238 to 3399 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 25/54(46%) | 0/54(0%) | Plus/Minus |
Query 37 KS*INW*FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 198 K *I+ *FT +E Y+CLQ + A+ + N VP+A+T+ H K VE+ N IS* Subject 3238 KG*IHQ*FTLNE*TYACLQG*PICAK*EPNRVPEAITVAWH*KGVEIINIIIS* 3399
Range 4: 3239 to 3400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 22/54(41%) | 0/54(0%) | Plus/Minus |
Query 36 KELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL 197 K LN +IH R + LPS+ C* +Q SA+S++ A ++C*+ Q+ NQL Subject 3239 KRLNPPMIHSQRMNVCLPSRLAHLC*VRTQQSARSNYRRLALKRC*NHQYHNQL 3400
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 4
Range 1: 3241 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.4 bits(282) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Plus |
Query 1 ADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN 195 AD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESE V +LS+PTI KQLGEN Subject 3241 ADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESECLVSPSLSAPTIHKQLGEN 3435
Range 2: 3240 to 3434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.4 bits(227) | 0.0 | 49/65(75%) | 0/65(0%) | Plus/Minus |
Query 2 FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSA 196 FSPSC MVG ER T SLST D IPAFKA PSVL +KPTECQKQ PSPGT KVLKSSIS SA Subject 3240 FSPSCL*MVGAERLGLTRHSLSTKDRIPAFKARPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SA 3434
Range 3: 3242 to 3430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 25/63(40%) | 0/63(0%) | Plus/Minus |
Query 6 LQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQ 194 L V WL + L+ L IH P+ + P + +C* +++L+AK+++HHQAQ + *S Q+ NQ Subject 3242 LPVVCEWLELRGLDLLGIHSPQKIEYQPLRQDHQC*VKNRLNAKNNYHHQAQRRY*SHQYHNQ 3430
Grapevine rupestris stem pitting associated virus isolate SK30, complete genome
Sequence ID: KX274277.1 Length: 8724 Number of Matches: 4
Range 1: 3241 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.1 bits(279) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Plus |
Query 1 ADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN 195 AD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESE V LS+PTI KQLGEN Subject 3241 ADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESECLVSPNLSAPTIHKQLGEN 3435
Range 2: 3240 to 3434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.6 bits(223) | 0.0 | 48/65(74%) | 0/65(0%) | Plus/Minus |
Query 2 FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSA 196 FSP+C MVG ER T SLST D IPAFKA PSVL +KPTECQKQ PSPGT KVLKSSIS SA Subject 3240 FSPNCL*MVGAERFGLTRHSLSTKDRIPAFKARPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SA 3434
Range 3: 3242 to 3430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 23/63(37%) | 0/63(0%) | Plus/Minus |
Query 6 LQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQ 194 L + WL + L+ L IH P+ + P + +C* +++L+AK+++HHQAQ + *+ Q+ NQ Subject 3242 LPIVCEWLELRGLDLLGIHSPQKIEYQPLRQDHQC*VKNRLNAKNNYHHQAQRRY*NHQYHNQ 3430
Nucleotide Sequence (230 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
188.5 | 993.4 | 48% | 1.185e-46 | 95% | AB277783.1 | |
188.5 | 1004.4 | 48% | 1.185e-46 | 96% | KX274275.1 | |
180.7 | 931.5 | 48% | 2.622e-44 | 86% | AY368590.1 | |
169.7 | 611.4 | 49% | 5.359e-41 | 50% | KR054735.1 | |
167.4 | 521.0 | 27% | 2.623e-40 | 44% | KT948710.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 1133 to 1360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 76/76(100%) | 0/76(0%) | Minus/Plus |
Query 3 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 230 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF Subject 1133 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 1360
Range 2: 1134 to 1361 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 72/76(95%) | 0/76(0%) | Plus/Minus |
Query 2 *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM 229 *NRNYA+ LNQLPPCQSK AHPQHPTQMA+L*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM Subject 1134 *NRNYAQPLNQLPPCQSKSAHPQHPTQMASL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM 1361
Range 3: 1135 to 1362 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 76/76(100%) | 0/76(0%) | Plus/Minus |
Query 1 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y 228 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y Subject 1135 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y 1362
Range 4: 1133 to 1360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.9 bits(371) | 0.0 | 72/76(95%) | 0/76(0%) | Plus/Minus |
Query 3 EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW 230 EIGIMR *INCLLAKAN HTLNIQLKWR CNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW Subject 1133 EIGIMRSR*INCLLAKANQHTLNIQLKWRACNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW 1360
Range 5: 1135 to 1326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 62/64(97%) | 0/64(0%) | Minus/Plus |
Query 37 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG 228 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYR AI*VGC*GCA+LLWQGG Subject 1135 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRLAI*VGC*GCADLLWQGG 1326
Range 6: 1134 to 1310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 58/59(98%) | 0/59(0%) | Minus/Plus |
Query 53 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F 229 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQ RHLSWMLRVC*F Subject 1134 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQARHLSWMLRVC*F 1310
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 6877 to 7104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 76/76(100%) | 0/76(0%) | Minus/Plus |
Query 3 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 230 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF Subject 6877 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 7104
Range 2: 6878 to 7105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 73/76(96%) | 0/76(0%) | Plus/Minus |
Query 2 *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM 229 *N+NYA+ LNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM Subject 6878 *NQNYAQPLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM 7105
Range 3: 6879 to 7106 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 76/76(100%) | 0/76(0%) | Plus/Minus |
Query 1 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y 228 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y Subject 6879 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y 7106
Range 4: 6877 to 7104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.8 bits(373) | 0.0 | 73/76(96%) | 0/76(0%) | Plus/Minus |
Query 3 EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW 230 EI IMR *INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW Subject 6877 EIRIMRSR*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW 7104
Range 5: 6879 to 7070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 64/64(100%) | 0/64(0%) | Minus/Plus |
Query 37 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG 228 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG Subject 6879 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG 7070
Range 6: 6878 to 7054 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 59/59(100%) | 0/59(0%) | Minus/Plus |
Query 53 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F 229 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F Subject 6878 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F 7054
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 6877 to 7104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 3 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 230 PYQNISVPREAHFIKSKTCRFG+NTCKYLLSFGF++HSDRSDEVITGSPFELDVEGVLICFGKEAV+LAAAHNSDF Subject 6877 PYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVNLAAAHNSDF 7104
Range 2: 6879 to 7106 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 72/76(95%) | 0/76(0%) | Plus/Minus |
Query 1 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y 228 LKSELCAAAK TASLPKQISTPSTSNSNGEPVITSSDLSLC KPKDRRYLHVF PNLQVFDFMK*ASLGTLIF*Y Subject 6879 LKSELCAAAKLTASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPKDRRYLHVFLPNLQVFDFMK*ASLGTLIF*Y 7106
Range 3: 6877 to 7104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 68/76(89%) | 0/76(0%) | Plus/Minus |
Query 3 EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW 230 EI IMR C +NCLLAKAN*HTLNIQLKW TCNHFIRPVTM IKTKG KVLTCIFAK AGL*LYEVSLPWNTDILIW Subject 6877 EI*IMRSCQVNCLLAKAN*HTLNIQLKW*TCNHFIRPVTMHIKTKG*KVLTCIFAKPAGL*LYEVSLPWNTDILIW 7104
Range 4: 6878 to 7105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 65/76(86%) | 0/76(0%) | Plus/Minus |
Query 2 *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM 229 *N NYA+L + LPPCQSKLAHPQHPTQM NL*SLHQTCHYA+ NQR EGTYMYF Q CRSLTL*SEPPLEH*YFDM Subject 6878 *NLNYAQLPS*LPPCQSKLAHPQHPTQMVNL*SLHQTCHYAHQNQRIEGTYMYFCQTCRSLTL*SEPPLEH*YFDM 7105
Range 5: 6879 to 7070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 59/64(92%) | 0/64(0%) | Minus/Plus |
Query 37 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG 228 ISKYQCSKGGSLHKVKDLQ+W+KYM*VPS+LWF* A**QV**SDYRF I*VGC*GCANLLWQGG Subject 6879 ISKYQCSKGGSLHKVKDLQVWQKYM*VPSILWF*CA**QV**SDYRFTI*VGC*GCANLLWQGG 7070
Range 6: 6878 to 7054 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 55/59(93%) | 0/59(0%) | Minus/Plus |
Query 53 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F 229 HIKISVFQGRLTS*SQRPA LAKIHVSTF PLVL+CIVTGLMK*LQV HLSWMLRVC*F Subject 6878 HIKISVFQGRLTS*SQRPAGLAKIHVSTFYPLVLMCIVTGLMK*LQVHHLSWMLRVC*F 7054
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 7
Range 1: 6877 to 7104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.7 bits(364) | 0.0 | 66/76(87%) | 0/76(0%) | Minus/Plus |
Query 3 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 230 PYQN+S+PREAHFIKSKTCRFGENTCKYLLSFGF + SDRSD V+ GSPFELDVEGVLICFGKEAVDLA +HNSDF Subject 6877 PYQNVSIPREAHFIKSKTCRFGENTCKYLLSFGFKVCSDRSDSVVIGSPFELDVEGVLICFGKEAVDLAVSHNSDF 7104
Range 2: 6879 to 7106 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 61/76(80%) | 0/76(0%) | Plus/Minus |
Query 1 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y 228 LKSELC A+STAS PKQISTPSTSNSNG+P+ T SDLSL LKPKD+RYL VFSPNLQVFDFMK ASLG L F*Y Subject 6879 LKSELCETARSTASFPKQISTPSTSNSNGDPITTLSDLSLQTLKPKDKRYLQVFSPNLQVFDFMKCASLGMLTF*Y 7106
Range 3: 6877 to 7104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 41/76(54%) | 0/76(0%) | Plus/Minus |
Query 3 EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW 230 EI I+R I+CL +KA+*HTL+I LKW N IRP+T + K QK+L + +K AG *LYE+ LP N DILIW Subject 6877 EIRIVRNRQIHCLFSKAD*HTLDI*LKW*PYNDTIRPITANFEAKRQKILASVLSKPAGF*LYEMCLPRNADILIW 7104
Range 4: 6878 to 7105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 38/76(50%) | 0/76(0%) | Plus/Minus |
Query 2 *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM 229 *N+N A+ + LP QS+LAHP+H TQM L* + T H *+Q+T+ T Q CR LTL*+ PP E *+FDM Subject 6878 *NQNCAKPPDPLPLFQSRLAHPRHLTQMVTL*RHYPTYHCKL*SQKTKDTCKCSLQTCRFLTL*NVPPSEC*HFDM 7105
Range 5: 6879 to 6974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 18/32(56%) | 0/32(0%) | Minus/Plus |
Query 133 ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLW 228 ISK Q S+GG+ HKVK+LQ+WR+++ V V W Subject 6879 ISKCQHSEGGTFHKVKNLQVWREHLQVSFVFW 6974
Range 6: 7011 to 7070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 14/20(70%) | 0/20(0%) | Minus/Plus |
Query 37 YRFAI*VGC*GCANLLWQGG 96 YR I*V C GCANLLW+ G Subject 7011 YRVTI*VRCRGCANLLWKRG 7070
Range 7: 6878 to 7051 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 29/58(50%) | 0/58(0%) | Minus/Plus |
Query 56 HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC* 229 HIK+S F+GR S*SQ+PA L + S FC L V G + L HLS M RVC* Subject 6878 HIKMSAFRGRHIS*SQKPAGLERTLASIFCLLASKFAVIGRIVSL*GHHLS*MSRVC* 7051
Grapevine rupestris stem pitting associated virus isolate VF1, partial genome
Sequence ID: KT948710.1 Length: 8716 Number of Matches: 6
Range 1: 6878 to 7105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 66/76(87%) | 0/76(0%) | Minus/Plus |
Query 3 PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 230 PYQNISVPREAHFIK+KTCRFG NTCKYL SFGF++HSDR D V+ GSPFELDVEGVLICFGKEAVDLA AHNSDF Subject 6878 PYQNISVPREAHFIKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDF 7105
Range 2: 6886 to 7107 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 52/74(70%) | 0/74(0%) | Plus/Minus |
Query 1 LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF 222 LKSELCA A+STAS PKQ+ TPSTS+SNG+P+ T+S LSL KPKD RYL V +PNLQV FMK ASLGTL+F Subject 6886 LKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVFMKCASLGTLMF 7107
Range 3: 6881 to 7105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 37/75(49%) | 0/75(0%) | Plus/Minus |
Query 3 EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILI 227 E+ I+R C*I LL+KAN ++LNIQ KWR N+ + +TM I+ K +VL + K A LYEV LPWN D+L+ Subject 6881 EVRIVRNC*IYSLLSKANENSLNIQFKWRPYNNCVHSITMNIEAKRLEVLAGVSTKPASFGLYEVCLPWNADVLV 7105
Range 4: 6891 to 7106 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 35/72(49%) | 0/72(0%) | Plus/Minus |
Query 2 *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH* 217 *++N A+LL+ PP QSK PQHP QMA L* L HY + +Q+ GT Q C+ +L*S PPLE * Subject 6891 *SQNCAQLLDLQPPFQSK*ELPQHPVQMATL*QLRPLYHYEHRSQKIGGTCRC*HQTCKFWSL*SVPPLER* 7106
Nucleotide Sequence (187 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
147.2 | 712.0 | 23% | 1.479e-34 | 90% | AY368590.1 | |
147.2 | 710.7 | 23% | 1.479e-34 | 85% | KR528585.1 | |
147.2 | 732.7 | 23% | 1.479e-34 | 93% | KX274275.1 | |
145.4 | 378.2 | 33% | 5.269e-34 | 42% | AY881626.1 | |
145.4 | 380.9 | 33% | 5.269e-34 | 44% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Plus |
Query 2 KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST 187 KKEGWDVV FEVFLRKVTGLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST Subject 4288 KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST 4473
Range 2: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 56/62(90%) | 0/62(0%) | Plus/Plus |
Query 1 KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH 186 KEGGLGCR L*SL *ESYRPKGWSLRDL**S A+P WLHRSMSSC+SQ*RFHLSCW*SLSKH Subject 4287 KEGGLGCRYL*SLS*ESYRPKGWSLRDL**SPAIPPWLHRSMSSCHSQ*RFHLSCW*SLSKH 4472
Range 3: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 57/62(92%) | 0/62(0%) | Minus/Minus |
Query 2 CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL 187 CALTRITSKRDESVTAN+KKT*IDVTR E L+FIKDHAMTSL*ACNFPK+DFKGNDIPALLL Subject 4288 CALTRITSKRDESVTANDKKT*IDVTRGE*LDFIKDHAMTSL*ACNFPKKDFKGNDIPALLL 4473
Range 4: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 58/62(94%) | 0/62(0%) | Minus/Minus |
Query 1 VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF 186 VL*QGSPAREMKASLR+TRRHRSM*PG NS TSSKITQ*PAFRPVTFLRKTSK TTSQPSFF Subject 4287 VL*QGSPAREMKASLRMTRRHRSM*PGGNSWTSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF 4472
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 6
Range 1: 4270 to 4455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Plus |
Query 2 KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST 187 KKEGWDVV FEVFLRKVTGLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST Subject 4270 KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST 4455
Range 2: 4269 to 4454 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 56/62(90%) | 0/62(0%) | Plus/Plus |
Query 1 KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH 186 KEGGLGC L*S *ESYRPKGWSLRDL**SSA+P WLHRSMSSCYSQ*RFHLSCW*SLSKH Subject 4269 KEGGLGCCHL*SFS*ESYRPKGWSLRDL**SSAIPPWLHRSMSSCYSQ*RFHLSCW*SLSKH 4454
Range 3: 4269 to 4454 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 60/62(97%) | 0/62(0%) | Minus/Minus |
Query 1 VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF 186 VL*QGSPAREMKASLRITRRHRSM*PG NS*TSSKITQ*PAFRPVTFLRKTSK TTSQPSFF Subject 4269 VL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF 4454
Range 4: 4270 to 4455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 56/62(90%) | 0/62(0%) | Minus/Minus |
Query 2 CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL 187 CALTRITSKRDESVTANNKKT*IDVTR E LNFIKDHAMTSL*ACNFPK++FKG++IPALLL Subject 4270 CALTRITSKRDESVTANNKKT*IDVTRGE*LNFIKDHAMTSL*ACNFPKKNFKGDNIPALLL 4455
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Plus |
Query 2 KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST 187 KKEGWDVV FEVFLRKVTGLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST Subject 4288 KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST 4473
Range 2: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.0 bits(297) | 0.0 | 58/62(94%) | 0/62(0%) | Plus/Plus |
Query 1 KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH 186 KEGGLGC L*SLP*ESYRPKGWSLRDL**SSA+PSWLHRSMSSCY Q*RFHLSCW*SLSKH Subject 4287 KEGGLGCCYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYPQ*RFHLSCW*SLSKH 4472
Range 3: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 58/62(94%) | 0/62(0%) | Minus/Minus |
Query 2 CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL 187 CALTRITSKRDESVTA+NKKT*IDVTR+E LNFIKDHAMTSL*ACNFPKEDFKGN+IPALLL Subject 4288 CALTRITSKRDESVTADNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNNIPALLL 4473
Range 4: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 60/62(97%) | 0/62(0%) | Minus/Minus |
Query 1 VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF 186 VL*QGSPAREMKASLRITRRHRSM*PG NS*TSSKITQ*PAFRPVTFLRKTSK TTSQPSFF Subject 4287 VL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF 4472
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 4
Range 1: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 59/62(95%) | 0/62(0%) | Plus/Plus |
Query 2 KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST 187 KKEGWDVV FEVFLRKV+GLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST Subject 4288 KKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST 4473
Range 2: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 47/62(76%) | 0/62(0%) | Minus/Minus |
Query 1 VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF 186 VL GSPA EMKASLR+T +HRS+ PG N+*TSSKITQ PAF+P TFLRKTSK TTS PSFF Subject 4287 VLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQWPAFKPETFLRKTSKVTTSHPSFF 4472
Range 3: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 30/62(48%) | 0/62(0%) | Minus/Minus |
Query 2 CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL 187 CAL +T K +ES+T +K+T*ID++R +QLN I+++ M SL NF KE+ K + IP LL Subject 4288 CALAWVTGK*NESITTYDKQT*IDISRGKQLNLIENYTMASLQTRNFSKENLKSHYIPPFLL 4473
Range 4: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 26/62(42%) | 0/62(0%) | Plus/Plus |
Query 1 KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH 186 KEG +GC * P*+S+ +GW L + * S V W++RSM +C++ * FH +C * + +H Subject 4287 KEGRVGCSDF*GFP*KSFWFEGWPLCNFR*GSVVSPWIYRSMFACHT**CFHFTCR*PMPEH 4472
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 4
Range 1: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 59/62(95%) | 0/62(0%) | Plus/Plus |
Query 2 KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST 187 KKEGWDVV FEVFLRKV+GLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST Subject 4288 KKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST 4473
Range 2: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 47/62(76%) | 0/62(0%) | Minus/Minus |
Query 1 VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF 186 VL GSPA EMKASLR+T +HRS+ PG N+*TSSKITQ PAF+P TFLRKTSK TTS PSFF Subject 4287 VLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQWPAFKPETFLRKTSKVTTSHPSFF 4472
Range 3: 4288 to 4473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 31/62(50%) | 0/62(0%) | Minus/Minus |
Query 2 CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL 187 CAL IT K +ES+T +K+T*ID++R +QLN I+++ M SL NF KE+ K + IP LL Subject 4288 CALAWITGK*NESITTYDKQT*IDISRGKQLNLIENYTMASLQTRNFSKENLKSHYIPPFLL 4473
Range 4: 4287 to 4472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 27/62(44%) | 0/62(0%) | Plus/Plus |
Query 1 KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH 186 KEG +GC * P*+S+ +GW L + * S V W++RSM +C++ * FH +C *S+ +H Subject 4287 KEGRVGCSDF*GFP*KSFWFEGWPLCNFR*GSVVSPWIYRSMFACHT**CFHFTCR*SMPEH 4472
Nucleotide Sequence (399 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
244.8 | 1603.9 | 52% | 4.028e-63 | 84% | AB277783.1 | |
244.8 | 1609.8 | 52% | 4.028e-63 | 84% | KX274275.1 | |
244.4 | 1400.9 | 53% | 5.533e-63 | 77% | AY368590.1 | |
242.5 | 1118.5 | 22% | 1.971e-62 | 78% | AY731821.1 | |
240.7 | 850.9 | 24% | 6.933e-62 | 45% | KR054735.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 10
Range 1: 215 to 580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.8 bits(528) | 0.0 | 103/122(84%) | 0/122(0%) | Minus/Plus |
Query 2 LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 367 L F+G+ L +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL Subject 215 LQVMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL 580
Range 2: 278 to 580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 97/101(96%) | 0/101(0%) | Plus/Minus |
Query 2 ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN 304 ELGFLKD FFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*E +QHIRHCV+QKGTGFTRKSHYSKRSKLGSKMN Subject 278 ELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ECKQHIRHCVKQKGTGFTRKSHYSKRSKLGSKMN 580
Range 3: 283 to 579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 97/99(98%) | 0/99(0%) | Plus/Minus |
Query 3 SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 SWGFLKIPSLNK HPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLK VNNIFAIVLNKKVLASPVNLIIAKDPSLDPR Subject 283 SWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 579
Range 4: 286 to 579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 93/98(95%) | 0/98(0%) | Minus/Plus |
Query 3 WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ETPT 296 WIQAWIFCYNEIYG*SQYLFV HNGEYVV+ LKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWM FV*RR+L*ETPT Subject 286 WIQAWIFCYNEIYG*SQYLFV*HNGEYVVYILKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPT 579
Range 5: 279 to 581 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.1 bits(474) | 0.0 | 98/101(97%) | 0/101(0%) | Plus/Minus |
Query 1 *VGVS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE 303 *VGVS*R LL*TN+IHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLR *TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE Subject 279 *VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRM*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE 581
Range 6: 324 to 581 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 82/86(95%) | 0/86(0%) | Minus/Plus |
Query 1 RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPNS 258 RVKPVPFC TQWRICC S*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKK SLRNPNS Subject 324 RVKPVPFCLTQWRICCLHS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNS 581
Range 7: 824 to 919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 29/32(91%) | 0/32(0%) | Plus/Minus |
Query 302 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNH 397 N +N+NWKSEHAINTHKLKRRQSFN*VIHNNH Subject 824 NAVNNNWKSEHAINTHKLKRRQSFN*VIHNNH 919
Range 8: 824 to 919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 31/32(97%) | 0/32(0%) | Minus/Plus |
Query 302 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 397 VIIMNNLVKALSTFEFVG+YSVLRFPVVVHSV Subject 824 VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSV 919
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 10
Range 1: 5959 to 6324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.8 bits(528) | 0.0 | 103/122(84%) | 0/122(0%) | Minus/Plus |
Query 2 LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 367 L F+G+ L +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL Subject 5959 LQVMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL 6324
Range 2: 6022 to 6324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.6 bits(497) | 0.0 | 97/101(96%) | 0/101(0%) | Plus/Minus |
Query 2 ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN 304 ELGFLKD FFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*L PCQFVP*E EQHI HCVEQKGTGFTRKSHYSKRSKLGSKMN Subject 6022 ELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LRPCQFVP*ECEQHICHCVEQKGTGFTRKSHYSKRSKLGSKMN 6324
Range 3: 6027 to 6323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 97/99(98%) | 0/99(0%) | Plus/Minus |
Query 3 SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 SWGFLKIPSLNK HPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLK VNNIFAIVLNKKVLASPVNLIIAKDPSLDPR Subject 6027 SWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 6323
Range 4: 6030 to 6323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.5 bits(477) | 0.0 | 93/98(95%) | 0/98(0%) | Minus/Plus |
Query 3 WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ETPT 296 WIQAWIFCYNEIYG*SQYLFVQHNG+YVVH LKVRTDRV VNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWM FV*RR+L*ETPT Subject 6030 WIQAWIFCYNEIYG*SQYLFVQHNGKYVVHILKVRTDRV*VNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPT 6323
Range 5: 6023 to 6325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 96/101(95%) | 0/101(0%) | Plus/Minus |
Query 1 *VGVS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE 303 *VGVS*R LL*TN+IHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLT+TLSVRTLR *TTY PLC*TKRYWLHP*ISL*QKIQAWIQDE Subject 6023 *VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTQTLSVRTLRM*TTYLPLC*TKRYWLHP*ISL*QKIQAWIQDE 6325
Range 6: 6068 to 6325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.8 bits(410) | 0.0 | 82/86(95%) | 0/86(0%) | Minus/Plus |
Query 1 RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPNS 258 RVKPVPFCSTQW+ICCS S*GTN*QG SQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKK SLRNPNS Subject 6068 RVKPVPFCSTQWQICCSHS*GTN*QGLSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNS 6325
Range 7: 6568 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 30/32(94%) | 0/32(0%) | Plus/Minus |
Query 302 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNH 397 N MN+NWKSEHAINTHKLKRRQSFN*VIHNNH Subject 6568 NAMNNNWKSEHAINTHKLKRRQSFN*VIHNNH 6663
Range 8: 6568 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 32/32(100%) | 0/32(0%) | Minus/Plus |
Query 302 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 397 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV Subject 6568 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 6663
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 10
Range 1: 5959 to 6324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.4 bits(527) | 0.0 | 103/122(84%) | 0/122(0%) | Minus/Plus |
Query 2 LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 367 L F+G+ L +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL Subject 5959 LQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL 6324
Range 2: 6027 to 6317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 90/97(93%) | 0/97(0%) | Plus/Minus |
Query 9 GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 GFLKIPSLNK HPQNVGFVTNCTLALRQIIFR PSCSVLSLNLL AH+SSPA AIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLI+AKDPS DPR Subject 6027 GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPSFDPR 6317
Range 3: 6022 to 6324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.6 bits(401) | 0.0 | 78/101(77%) | 0/101(0%) | Plus/Minus |
Query 2 ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN 304 +L FLKD FF+QTPSTKC VCD+L+ S KANHI E FM S KP*SAV AH+IARK N*LGPCQFVP*E +QHI HCVEQKGTGFTRKSHY KR KL SKM+ Subject 6022 QLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKRPKL*SKMD 6324
Range 4: 6030 to 6317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 75/96(78%) | 0/96(0%) | Minus/Plus |
Query 9 WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ET 296 WI+AW+FC+NEIYG*SQYLFVQHNG+YVV+ LKVRTDRVRVNC CGR*+VR QQIKA*+* *R P+YDLP* * I HKP+ILWM FV RR+L*ET Subject 6030 WIKAWVFCHNEIYG*SQYLFVQHNGKYVVYLLKVRTDRVRVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ET 6317
Range 5: 6026 to 6316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 78/97(80%) | 0/97(0%) | Plus/Minus |
Query 10 VS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQD 300 VS*R LL*TN+IHKM GL*+I * *GKSY G LH Q *ALICC RT HRPQ QLTRTLSVRTLR+*TTY PLC*TKRYWLHP*ISL QK QA IQD Subject 6026 VS*RSLL*TNTIHKM*GL*RIVL*P*GKSYSGNLHAQF*ALICCLRTYHRPQTQLTRTLSVRTLRR*TTYLPLC*TKRYWLHP*ISLWQKTQALIQD 6316
Range 6: 6068 to 6316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.9 bits(323) | 0.0 | 67/83(81%) | 0/83(0%) | Minus/Plus |
Query 10 RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRN 258 RVKPVPFCSTQW+ICC S*GTN*QGPSQL LRAM CA TAD*GL+L+MK S*I*FAL+L+ N SQT HFVDGVC KK SLRN Subject 6068 RVKPVPFCSTQWQICCLPS*GTN*QGPSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRN 6316
Range 7: 6571 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 29/31(94%) | 0/31(0%) | Plus/Minus |
Query 302 NTMNDNWKSEHAINTHKLKRRQSFN*VIHNN 394 N MN+NWKSEHAINTHKLKRRQSFN*VIHNN Subject 6571 NAMNNNWKSEHAINTHKLKRRQSFN*VIHNN 6663
Range 8: 6571 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 31/31(100%) | 0/31(0%) | Minus/Plus |
Query 302 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 394 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV Subject 6571 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 6663
Rupestris stem pitting associated virus 1 RNA dependent RNA polymerase gene, partial cds
Sequence ID: AY731821.1 Length: 436 Number of Matches: 6
Range 1: 74 to 436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
242.5 bits(523) | 0.0 | 102/121(84%) | 0/121(0%) | Minus/Plus |
Query 5 LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQ 367 L F+G+ L +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQ Subject 74 LQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQ 436
Range 2: 142 to 432 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 90/97(93%) | 0/97(0%) | Plus/Minus |
Query 9 GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 GFLKIPSLNK HPQNVGFVTNCTLALRQIIFR PSCSVLSLNLL AH+SSPA AIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLI+AKDPS DPR Subject 142 GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPSFDPR 432
Range 3: 137 to 436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 78/100(78%) | 0/100(0%) | Plus/Minus |
Query 5 LGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN 304 L FLKD FF+QTPSTKC VCD+L+ S KANHI E FM S KP*SAV AH+IARK N*LGPCQFVP*E +QHI HCVEQKGT FTRKSHY KRSKL SKM+ Subject 137 LRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKCN*LGPCQFVP*EGKQHICHCVEQKGTSFTRKSHYGKRSKL*SKMD 436
Range 4: 145 to 432 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 75/96(78%) | 0/96(0%) | Minus/Plus |
Query 9 WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ET 296 WI+AWIFC+NEIYG*S YLFVQHNG+YVV+ LKVRTDRVRVNC CGR*+VR QQIKA*+* *R P+YDLP* * I HKP+ILWM FV RR+L*ET Subject 145 WIKAWIFCHNEIYG*S*YLFVQHNGKYVVYLLKVRTDRVRVNCICGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ET 432
Range 5: 141 to 431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 78/97(80%) | 0/97(0%) | Plus/Minus |
Query 10 VS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQD 300 VS*R LL*TN+IHKM GL*+I * *GKSY G LH Q *ALICC RT HRPQ QLTRTLSVRTLR+*TTY PLC*TKRY LHP*ISL QKIQA IQD Subject 141 VS*RSLL*TNTIHKM*GL*RIVL*P*GKSYSGNLHAQF*ALICCLRTYHRPQMQLTRTLSVRTLRR*TTYLPLC*TKRY*LHP*ISLWQKIQALIQD 431
Range 6: 183 to 431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 66/83(80%) | 0/83(0%) | Minus/Plus |
Query 10 RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRN 258 RVK VPFCSTQW+ICC S*GTN*QGPSQL LRAM CA TAD*GL+L+MK S*I*FAL+L+ N SQT HFVDGVC KK SLRN Subject 183 RVKLVPFCSTQWQICCLPS*GTN*QGPSQLHLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRN 431
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 9
Range 1: 6022 to 6324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.7 bits(519) | 0.0 | 99/101(98%) | 0/101(0%) | Minus/Plus |
Query 2 VHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 304 VHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCAN RLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL Subject 6022 VHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL 6324
Range 2: 6027 to 6317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 72/97(74%) | 0/97(0%) | Plus/Minus |
Query 9 GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 GFLKIPSLN+ HPQNVG VTNCT ALRQIIF+ PSCSV S + AH+SSPAKA+DSDPV+SYL+KVNN+ AIVL +KVLASPVNL+IA +PS DP+ Subject 6027 GFLKIPSLNRHHPQNVGLVTNCTFALRQIIFKKPSCSVFSRSRRFAHISSPAKAMDSDPVNSYLRKVNNMLAIVLKRKVLASPVNLMIANEPSFDPK 6317
Range 3: 6022 to 6324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 48/101(48%) | 0/101(0%) | Plus/Minus |
Query 2 ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN 304 EL FLK+S KQTP TKCGV D+LH F+A+HI + M AV H+I KSN QF+ + +QH+ HCVE++ G T KSH SK +KL S+++ Subject 6022 ELRFLKNSLLKQTPPTKCGVGDELHFRFEADHIQKALMLRF*SQPAVCTHIIPSKSNGFRSRQFISQKGKQHVGHCVEKESAGLTSKSHDSK*AKL*SQVD 6324
Range 4: 6033 to 6179 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 22/49(45%) | 0/49(0%) | Minus/Plus |
Query 147 IQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HV 293 I+AW+ CY+EIY * Q+ QHNG++VV+ ++ D + ++CFC *+V Subject 6033 IKAWLICYHEIYW*GQHFPFQHNGQHVVYLSEI*IDGI*IHCFCWG*YV 6179
Range 5: 6225 to 6317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 19/31(61%) | 0/31(0%) | Minus/Plus |
Query 9 KYDLP*S*GAICHKPHILWMEFV*RRNL*ET 101 +YDLP S AI H+PHILW+ V* N *ET Subject 6225 EYDLPQSESAIRHQPHILWVVSV*GGNF*ET 6317
Range 6: 6071 to 6325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 41/85(48%) | 0/85(0%) | Minus/Plus |
Query 1 VKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPNS 255 V+P STQW CC * N*+ + LLL M C TA + +M+ *I* A K +CN S TPHFV GVCL++E LRN +S Subject 6071 VRPALSFSTQWPTCCLPF*DMN*RDLNPLLLLGMICVQTAGCD*KRSMRAF*I*SASKRKCNSSPTPHFVGGVCLRREFLRNLSS 6325
Range 7: 6568 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 28/32(88%) | 0/32(0%) | Minus/Plus |
Query 302 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV 397 V IMNNLVKALS FEFVGV+SVL+FPVVVHSV Subject 6568 VSIMNNLVKALSEFEFVGVFSVLKFPVVVHSV 6663
Nucleotide Sequence (1021 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
589.9 | 3140.1 | 40% | 1.948e-166 | 59% | AY368590.1 | |
598.1 | 3583.9 | 49% | 6.41e-169 | 58% | KX274275.1 | |
539.0 | 1792.3 | 32% | 3.985e-151 | 43% | AY881627.1 | |
538.5 | 1815.7 | 27% | 5.475e-151 | 41% | JX559646.1 | |
538.1 | 1783.2 | 27% | 7.521e-151 | 40% | AY881626.1 |
Alignments
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 12
Range 1: 487 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
589.9 bits(1281) | 0.0 | 246/253(97%) | 0/253(0%) | Plus/Plus |
Query 117 DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R 875 DKSNHVVSKKGIGDSDSLKKLVPRVIS GARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKA+SVVLSDGSRYAVDVLHSKFCHHLLSFTPI+NLLVSNIRCFSGFDAIGIKDLEPL RGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL I FF R Subject 487 DKSNHVVSKKGIGDSDSLKKLVPRVISAGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKAKSVVLSDGSRYAVDVLHSKFCHHLLSFTPISNLLVSNIRCFSGFDAIGIKDLEPLIRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLVISFFCR 1245
Range 2: 513 to 1244 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
531.2 bits(1153) | 0.0 | 233/244(95%) | 0/244(0%) | Minus/Minus |
Query 143 LQKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF 874 LQKK M SFG+FGISREPLLPQL+TSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PR+RGSRSLMPMASKPEKHRMLETRRLLIGVKLNK WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARS+LGLTTSRKVMRSRIDQ* ISS RKRFLAP EITRGTNFLSESESPIPF Subject 513 LQKKEMTSFGIFGISREPLLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRIRGSRSLMPMASKPEKHRMLETRRLLIGVKLNKWWQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSILGLTTSRKVMRSRIDQ*WISS*RKRFLAPAEITRGTNFLSESESPIPF 1244
Range 3: 458 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
483.1 bits(1048) | 0.0 | 219/263(83%) | 0/263(0%) | Minus/Minus |
Query 88 FFRRRGWLALECLALAESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH 876 F++R+ LALE LALA SHFFHNL*Q KQN Q*I*S Q* CR*ADAISPRQIPYQAF* FSN+ IF**QHHD PESSYA R+LEAPDL*CRWRQNRRNTEC*K EDY*LG*SSIS GRILNG HRPHSVNH IRPQI L*ANTYLTMVVNTFHTSYHPEQRAFG Q+FYTGKPK LSFQESQQGF V Q LQEA WA*PLPGR**D V*T+N HH EKDSLH RSHE PIS* SQNHQFPSC*QHG*T H*SL QI H Subject 458 FYKRKR*LALEYLALAGSHFFHNL*QAKQNLQ*I*SLSQ*ACR*ADAISPRQIPYQAF*EFSNRGIF**QHHDVPESSYACRELEAPDL*CRWRQNRRNTEC*KPEDY*LG*SSISGGRILNGEHRPHSVNHPIRPQIWL*ANTYLTMVVNTFHTSYHPEQRAFGPQRFYTGKPKDLSFQESQQGFPEVSQLLQEAYWA*PLPGR**DHV*TNNGSHHEEKDSLHQRRSHEEPIS*VSQNHQFPSC*QHG*TCH*SLSQILNH 1246
Range 4: 469 to 828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.1 bits(546) | 0.0 | 103/120(86%) | 0/120(0%) | Minus/Minus |
Query 99 FKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK 458 FKQIPT*QWL*IHFTPVTIRSKEHLA R+SILVSPR+*AFRRANKDFR Y+S CKKH+GPNHFQEGDEI YRP+M+ IM+KKIPCT DHTR+QFLE VRITNSLLADNMVRL+TRAYHK Subject 469 FKQIPT*QWL*IHFTPVTIRSKEHLALRDSILVSPRI*AFRRANKDFRRYHSCCKKHIGPNHFQEGDEITYRPIMDLIMKKKIPCTSGDHTRNQFLE*VRITNSLLADNMVRLVTRAYHK 828
Range 5: 877 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 99/123(80%) | 0/123(0%) | Minus/Minus |
Query 507 SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*ME 875 S++E D *LWN+WH*Q ATSSTTY+K SKI NEFNL SR VDKLTQFRLGRFLIRLF+ SQI++YFSNNIMM+RKAAMH A *RLQIFNADGVKTGETPNVRN KI +WG+AQ*V+AEF*ME Subject 877 STKERDD*LWNIWH*QGATSSTTYNKRSKIFNEFNLSPSRLVDKLTQFRLGRFLIRLFKSSQIEVYFSNNIMMYRKAAMHAAN*RLQIFNADGVKTGETPNVRNQKITNWGKAQ*VVAEF*ME 1245
Range 6: 468 to 920 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.3 bits(625) | 0.0 | 128/151(85%) | 0/151(0%) | Plus/Plus |
Query 98 ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPN 550 IC KL** V*PCCQQEGNW*F*L QEIG SCDL CKESFS **+ LLVYT SHHLPGSG*AQ+ASCN C+T NPCWLS*KLK LGLPV*N * PNALCSGW*LV*NVFTTIVK*VFA*S ICGLI WFTLCGRC PFKILP LIEL+PN Subject 468 ICDKL**QV*PCCQQEGNW*F*LTQEIGSSCDLRWCKESFSS**DPLLVYT*SHHLPGSG*AQYASCNSCDTSGNPCWLS*KLKSLGLPV*NL*GPNALCSGW*LV*NVFTTIVK*VFA*SQICGLIGWFTLCGRCSPFKILPPLIELYPN 920
Range 7: 1005 to 1241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 64/79(81%) | 0/79(0%) | Plus/Plus |
Query 635 YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASHPLLL 871 +A*LLSG S*CCY*NI LFEN KA**GICRGEIASAYRQ YW+ D*IH* FCF C+KLWKKWL ANAK+SKASH LL Subject 1005 HA*LLSGTS*CCY*NIPLFENS*KA**GICRGEIASAYRQAYWERD*IH*RFCFACYKLWKKWLPANAKYSKASHLFLL 1241
Range 8: 737 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
301.2 bits(651) | 0.0 | 140/170(82%) | 0/170(0%) | Plus/Plus |
Query 367 IEFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE 876 IE L+AKCSLLRMVTGVKCIHNHCQVGICLK +LWSY MVHAMRSM SIQNSA TY*A PQ +IF FLTFGVSPVLTPSALKIWSL* A CIAAFR IMMLLLKY I*E KSLIRNLPRRNCVSLST+LL RLNSL+ILL L *VVEEVA C*CQ FQS* S S E Subject 737 IESLRAKCSLLRMVTGVKCIHNHCQVGICLKPNLWSYRMVHAMRSMFSIQNSATTY*ALPQLVIFWFLTFGVSPVLTPSALKIWSL*FAACIAAFRYIMMLLLKYTSI*ELLKSLIRNLPRRNCVSLSTSLLGERLNSLKILLRLL*VVEEVAPC*CQIFQS*SSLSFVE 1246
Range 9: 491 to 682 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 53/64(83%) | 0/64(0%) | Plus/Plus |
Query 121 SLTMLSARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*Y 312 SLTMLSARRELVILT SRNW LV*S VQGIFF MM+ I GLY ISSPSWKWLGP CFLQ+L*Y Subject 491 SLTMLSARRELVILTHSRNWFLV*SPLVQGIFFFMMRSIIGLYVISSPSWKWLGPICFLQQL*Y 682
Range 10: 1150 to 1278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 29/43(67%) | 0/43(0%) | Minus/Plus |
Query 870 IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS 998 I DFA +V GRSGSLL+PNIP +V SFFCRM+ N LAR+SS Subject 1150 IEDFASLVISCGRSGSLLMPNIPKLVISFFCRMMPNALARLSS 1278
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 14
Range 1: 487 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
598.1 bits(1299) | 0.0 | 249/253(98%) | 0/253(0%) | Plus/Plus |
Query 117 DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R 875 DKSNHV+SKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL I FF R Subject 487 DKSNHVISKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLVISFFCR 1245
Range 2: 467 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
563.7 bits(1224) | 0.0 | 245/260(94%) | 0/260(0%) | Minus/Minus |
Query 97 FFRRRGWLALECLALAESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQI 876 F++RR LALECLALAESHFFHNL*QVKQNPQ*I*SPFQ VCR*ADAISPRQI YQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPD *CRWRQN+RNTEC*KL+DY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFG QKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR *D V*TSNEFHH EKDSLHL*RSHEGPIS*ASQNHQFPSC* HG*TYH*SL QI Subject 467 FYKRRR*LALECLALAESHFFHNL*QVKQNPQ*I*SPFQLVCR*ADAISPRQILYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDP*CRWRQNQRNTEC*KLKDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGPQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGRL*DHV*TSNEFHHEEKDSLHL*RSHEGPIS*ASQNHQFPSC**HG*TYH*SLSQI 1246
Range 3: 513 to 1244 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
542.2 bits(1177) | 0.0 | 239/244(98%) | 0/244(0%) | Minus/Minus |
Query 143 LQKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF 874 LQKK + SFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLET+RLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISS RKRFLAPVEITRGTNFLSESESPIPF Subject 513 LQKKEITSFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETKRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISS*RKRFLAPVEITRGTNFLSESESPIPF 1244
Range 4: 469 to 834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
281.0 bits(607) | 0.0 | 116/122(95%) | 0/122(0%) | Minus/Minus |
Query 99 SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK 464 SSFKQIPT*QWL*IHFTPVTIRSKEHLA RNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEG EI YRPVMNFIM+KKIPCTCRDHTRDQFLERVRITNSLLA++MVRLITRAYHK Subject 469 SSFKQIPT*QWL*IHFTPVTIRSKEHLALRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGYEITYRPVMNFIMKKKIPCTCRDHTRDQFLERVRITNSLLANDMVRLITRAYHK 834
Range 5: 877 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.9 bits(574) | 0.0 | 116/123(94%) | 0/123(0%) | Minus/Minus |
Query 507 SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*ME 875 S++EGD *LWNVWH*QRATSSTTYDK*SKILNEFNLPSS FVDKLTQFRLGRF IRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQI NADGVKT ETPNVRN*KIIDWGEAQ*VMAEF*ME Subject 877 STKEGDN*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSWFVDKLTQFRLGRFFIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQILNADGVKTRETPNVRN*KIIDWGEAQ*VMAEF*ME 1245
Range 6: 468 to 926 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.8 bits(720) | 0.0 | 146/153(95%) | 0/153(0%) | Plus/Plus |
Query 98 ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ* 556 IC KL***V*PC QEGNW*F*LAQEIGPSCDLYRCKESFS **NSLLVYT SH+LPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF* PNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ* Subject 468 ICDKL***V*PCH*QEGNW*F*LAQEIGPSCDLYRCKESFSS**NSLLVYT*SHNLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*GPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ* 926
Range 7: 1005 to 1241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 75/79(95%) | 0/79(0%) | Plus/Plus |
Query 635 YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASHPLLL 871 YA*LLSGAS*CCY*NISLFENPQKA** ICRGEIASAYRQT WKGD*IH*GFCFTCHKLWKKWLSANAKHSKAS+ LLL Subject 1005 YA*LLSGAS*CCY*NISLFENPQKA**RICRGEIASAYRQTNWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASYLLLL 1241
Range 8: 737 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
365.3 bits(791) | 0.0 | 162/170(95%) | 0/170(0%) | Plus/Plus |
Query 367 IEFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE 876 IEFL+AKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVS VLTPSAL+IWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLI+NLPRRNCVSLSTN LEGRLNSLRILLHLS*VVEEVALC*CQTFQS* SPS E Subject 737 IEFLRAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSLVLTPSALRIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIKNLPRRNCVSLSTNQLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*LSPSFVE 1246
Range 9: 488 to 685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Plus |
Query 118 ISLTMLSARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*YP 315 ISLTM ARRELVILTRSRNWSLV*SLQVQGIFF MMKFITGLY IS PSWKWLGPTCFLQRL*YP Subject 488 ISLTMSLARRELVILTRSRNWSLV*SLQVQGIFFFMMKFITGLYVIS*PSWKWLGPTCFLQRL*YP 685
Range 10: 1136 to 1279 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 31/48(65%) | 0/48(0%) | Plus/Minus |
Query 869 LKKS*PEHFPTFYKRRRKPPLECLAIAKNHFFHHI*QLKQNPQSIKTP 1012 L K+*PEH +FYKRRR LECLA+A++HFFH++*Q+KQNPQ I +P Subject 1136 LMKA*PEHLASFYKRRR*LALECLALAESHFFHNL*QVKQNPQ*I*SP 1279
Range 11: 1150 to 1278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 29/43(67%) | 0/43(0%) | Minus/Plus |
Query 870 IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS 998 I DFA +V GRSGSLL+PNIP +V SFFCRM+ N LAR+SS Subject 1150 IEDFASLVISCGRSGSLLMPNIPKLVISFFCRMMPNALARLSS 1278
Range 12: 1146 to 1277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 27/44(61%) | 0/44(0%) | Plus/Minus |
Query 871 EEILARTFSNILQKKEKTTIGMFGNSKEPLLPPHLTTKAKSPIN 1002 +E LAR F ILQKKE T+ GMFG S+EPLLP +T++AKS +N Subject 1146 DESLARAFGIILQKKEITSFGMFGISREPLLPQLMTSEAKSSMN 1277
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 11
Range 1: 487 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
539.0 bits(1170) | 0.0 | 220/253(87%) | 0/253(0%) | Plus/Plus |
Query 117 DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R 875 DKS+ V+SKKGIGDSD+L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQYR+S Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDF+SLVISCGRSGSLLMPNI KL I FF R Subject 487 DKSSQVISKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYRVSNNQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLASNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFSSLVISCGRSGSLLMPNISKLVISFFCR 1245
Range 2: 513 to 1241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
415.7 bits(901) | 0.0 | 187/243(77%) | 0/243(0%) | Minus/Minus |
Query 143 QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF 871 QKK + + +FG+S+EPLLPQLMTSE KSSMN ISLPVGLS+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRS MP+ASKPEKH + E RRL +GVKL++*W NFE ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS W LYW*AQG +LSGEPT SGGITAVA+S+LG TS+K+MRS IDQ**ISS RKRF APVEITRGTN S SESPIPF Subject 513 QKKDITNLEIFGMSKEPLLPQLMTSEEKSSMNFISLPVGLSMSWRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSFMPIASKPEKHLIFEARRLPMGVKLSR*WLNFE*MISTE*REPSGRTTDLALSRYLQDKGCEYISFQLPSGAKSNWLLLTLYW*AQGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSESPIPF 1241
Range 3: 469 to 834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 56/122(46%) | 0/122(0%) | Minus/Minus |
Query 99 SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK 464 SS K + T L*+H P+ I SK+ L +S+LV PR+ AFRRAN+ + C++H + Q+ +EIA PVMN IM++KIP TC ++ R+Q E VRI N+LLA+++ ITR YHK Subject 469 SSLK*VSTG*RL*VHLIPIAIWSKKQLVVTDSVLVGPRIEAFRRANQHLWRNHCSCQEHTWLCNIQKINEIAD*PVMNLIMQEKIPSTCGNYARNQPPECVRIANTLLANDLTGFITRTYHK 834
Range 4: 880 to 1215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 53/112(47%) | 0/112(0%) | Minus/Minus |
Query 510 NVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M 845 N+ H QRAT STTYD * KI +EF LP +++L +FRL L+R E S I+IY ++I+M+R+A +HT *RL+I A ++ GE P++ KI GEA+ VMA+F*+ Subject 880 NIRHEQRATPSTTYD**GKIFDEFYLPPCGLINELAKFRLSGLLVRFLESS*IEIYLGDHIVMYREATVHTTA*RLKILYAYCIEAGEAPHI*GQKIAHGGEAKQVMAKF*V 1215
Range 5: 698 to 1201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 74/168(44%) | 0/168(0%) | Minus/Minus |
Query 328 AESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQ 831 A+SH FHNL* V++N +*I SP +* +SP++ P * F N+DI * H D S+ AY LEA D C ++RR+T + ED G*S DG IL+ ++ +SVNHQ+ PQI* * Y V+T H++ H EQ+A G TG+PK FQESQ Subject 698 AKSHSFHNL*LVRKNLR*ILSPSLWAYQ*VGEVSPQRTPCPVS*EFLNRDISW*PHRDVQGSNCAYHGLEAQDPLCLLHRSRRSTSYLRPEDCPWG*S*AGDG*ILSE*YQLNSVNHQVEPQI*P*VGIYRIKAVSTSHSNCHLEQKAIGCY*LCTGRPKD*GFQESQ 1201
Range 6: 458 to 640 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 34/61(56%) | 0/61(0%) | Minus/Minus |
Query 88 PGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH 270 P **DR TSNE HH KDS HL + P S QN Q+PSC* YH*+L QIQTH Subject 458 PKN**DR*LTSNESHHAGKDSEHLWKLRAEPTSGVCQNRQYPSC**LDWIYH*NLSQIQTH 640
Range 7: 468 to 920 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 70/151(46%) | 0/151(0%) | Plus/Plus |
Query 98 ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPN 550 IC K ***+ QEG W F* E+G + + +RC ESF **+SLLV RSH G A++A N ++ WLS*K + LGLPV + *+P A CS W L *+V T + *+ * *ICG *WFTL KI PS LHP+ Subject 468 ICDKF***IQSSH*QEGYWRF*HTPEVGSARNFHRCSESFPA**DSLLVNQRSH*FFGCCKAKYALGNCSDSSRGAGWLS*KPQSLGLPVQSQ*QPIAFCSRWQLE*DVLTAFIL*IPT*G*ICGST*WFTLFS*YHSLKI*PSPA*LHPH 920
Range 8: 1005 to 1214 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 30/70(43%) | 0/70(0%) | Plus/Plus |
Query 635 YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKH 844 YA LL S C + +ISLF+N Q+ G+ GE + + + +GD IH F T HKLWK+WL A+A++ Subject 1005 YAQLLPCTSRCGHQDISLFKNSQETGQGVR*GETSPTH**AHREGDKIHRRFFLTSHKLWKEWLFAHAEY 1214
Range 9: 740 to 1216 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 71/159(45%) | 0/159(0%) | Plus/Plus |
Query 370 EFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTF 846 E + C LL+M G++C H+ V L+LDLW YLMVHA++ +S QN AIT ASP IF G SP A +I SL* VC A I M +YI I*E S++ R+ RRN + + GR NS +I H S*VVE VALC C+ F Subject 740 ESVTTNCFLLQMAIGMRCTHSLYPVDTYLRLDLWFYLMVHAIQLISFTQNLAITCLASPPWAIFWPQI*GASPASMQ*A*RILSL*AVVCTVASLYITMWSPRYISI*ELSRNRTRSPLRRNFANSLISPQGGR*NSSKIFPH*S*VVEGVALCSCRIF 1216
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 11
Range 1: 487 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
538.5 bits(1169) | 0.0 | 219/253(87%) | 0/253(0%) | Plus/Plus |
Query 117 DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R 875 DKS+ ++SKKGIGDS +L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+IS+ Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKFCHHLLSFTPI NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDF+SLVISCGRSGSLLMPNI KL I F R Subject 487 DKSSQIISKKGIGDSSTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDDQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFCHHLLSFTPIGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFSSLVISCGRSGSLLMPNISKLVISFLCR 1245
Range 2: 513 to 1241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.7 bits(877) | 0.0 | 186/243(77%) | 0/243(0%) | Minus/Minus |
Query 143 QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF 871 Q+ M + M GIS+EPLLPQL+T+E KSSMN ISLPVGLSIS*R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKH M E +RL +GVKL+K WQNFE ST *REPS TTDLA SKYL D GCEYIS QLPSGAKS S ILY *AQG +LSGEPT SGGITAVA+S+LGL TS+K +RS IDQ**ISS RKRFLAPVEITRGTN S ESP+PF Subject 513 QRNDMTNLEMLGISKEPLLPQLITNEEKSSMNFISLPVGLSIS*RSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHLMFEVKRLPMGVKLSKWWQNFE*MISTE*REPSGSTTDLAFSKYLHDKGCEYISFQLPSGAKSS*SSLILY**AQGLRLSGEPTSTSGGITAVAKSILGLATSKKFIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF 1241
Range 3: 469 to 834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 61/122(50%) | 0/122(0%) | Minus/Minus |
Query 99 SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK 464 SS + + *Q L*+H PV I SKE L N +L+ PRV AFRR N+ F G + C+KH +H QE +IA PVMNFIM+KKIP TC +H RDQ E +TN+ LA+++ +TR YHK Subject 469 SSLQ*VSA*QRL*VHLIPVAIWSKEQLIVTNFVLIGPRVKAFRRTNQHFWGDHRSCQKHTWLSHIQEIYQIAN*PVMNFIMQKKIPSTCGNHARDQPPECAGVTNAFLANDLA*FVTRTYHK 834
Range 4: 880 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 57/122(47%) | 0/122(0%) | Minus/Minus |
Query 510 SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M 875 S+EE *L NV H QRAT T Y+ * KILNEF ++KLT+ L R L+ L + +K+Y NIMMH K +H T*R +I A +KT +TP+V KI GEA+ V+AEF*+ Subject 880 SAEE*YD*LRNVRHKQRATPPTAYN**GKILNEFYFSPCGLINKLTKLCLSRLLVWLLKSP*VKVYLGYNIMMHWKTTVHATT*RFKILYAYCIKTRKTPHV*GQKIAYGGEAKQVVAEF*V 1245
Range 5: 458 to 1120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 101/221(46%) | 0/221(0%) | Minus/Minus |
Query 88 R*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH 750 +* D P+Q P A * +K I QHHDA E++ A DLE D C QN++NT C + +D G*S S GRIL+ ++ SV+ Q PQI* + +T VV+T H+S H EQRA F T +PKG FQE+Q G L +A A*P P DR TSNEFHH EKDS HL +S GP S +HQ SC* G H*+L QIQ H Subject 458 Q*VDEALPQQTPCLAS*ESLSKGISWLQHHDALENNCACHDLEVQDPLCLLHQNQKNTSCLRSKDCLWG*S*ASGGRILSE*YQLSSVSRQAVPQI*PSVSICMTKVVSTSHSSCHLEQRAADRH*FCTDRPKG*GFQENQPALLGGSPQLPKAYLA*PHPRNLSDR*LTSNEFHHAEKDS*HLWKSRAGPTSGVCWSHQCLSC**FGLICH*NLSQIQIH 1120
Range 6: 1145 to 1216 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 13/24(54%) | 0/24(0%) | Minus/Minus |
Query 775 ECLALAESHFFHNL*QVKQNPQ*I 846 +C A A+SH H+L* +++NPQ*I Subject 1145 KC*A*AKSHSSHSL*LMRKNPQ*I 1216
Range 7: 758 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 76/163(47%) | 0/163(0%) | Plus/Plus |
Query 388 CSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE 876 CSLL+M TG++C HN C +LDLW L HA + +S QNSA T ASP IF* T GV VL A +I +L*V C F+CIMML +Y F * +S R+L R++ V+L + + NSLRI H * V VALC C TF S* SS E Subject 758 CSLLQMATGMRCTHNLCHADTY*RLDLWYCLTAHATQLISFTQNSATTCLASPP*AIF*PQT*GVFLVLMQ*A*RILNL*VVACTVVFQCIMML*PRYTFT*GLLRSQTRSLLRQSFVNLLISPQGEK*NSLRIFPH*L*AVGGVALCLCLTFLS*SYHSSAE 1246
Range 8: 509 to 685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 32/59(54%) | 0/59(0%) | Plus/Plus |
Query 139 ARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*YP 315 AR+ LV S WS * QV GIFF MMKFITG AI SW WL CF Q * P Subject 509 ARKALVTPAHSGGWSRA*FPQVLGIFFCMMKFITGQLAI**ISWMWLSQVCFWQLR*SP 685
Range 9: 468 to 923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 74/152(49%) | 0/152(0%) | Plus/Plus |
Query 98 ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ 553 IC K ** + P QE +W* E+GP+ D +RC ESFS **NSLLV RS G G*A++A N + P + W S*K PLGL V N *R ALCS W L *+V TT V + *ICG * TL KILP L LHP++ Subject 468 ICDKF**QIKPNH*QERHW*LQHTPEVGPARDFHRC*ESFSA**NSLLVN*RSDKFLGCG*AKYAFGNCGDPPRSAGWFS*KP*PLGLSVQN**RSAALCSRWQLE*DVLTTFVMQILTEG*ICGTA*RLTLLS*YHSLKILPPLA*LHPHR 923
Range 10: 1005 to 1229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 31/75(41%) | 0/75(0%) | Plus/Plus |
Query 635 YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASH 859 +A L S AS*CC +I L ++ +A G+C G+ +S Y + + + IH*GF +KLW++WL A A H SH Subject 1005 HAQLFSSAS*CCNQDIPLLKDS*EARQGVC*GKASSTY**AHRERNKIH*GFFLISYKLWEEWLFAYA*HF*VSH 1229
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 11
Range 1: 487 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
538.1 bits(1168) | 0.0 | 219/253(87%) | 0/253(0%) | Plus/Plus |
Query 117 DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R 875 DKS+ ++SKKGIGDS +L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+IS+ Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY VD++HSKFCHHLLSFTPI NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDF+SLVISCGRSGSLLMPNI KL I F R Subject 487 DKSSQIISKKGIGDSSTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDDQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYLVDIIHSKFCHHLLSFTPIGNLLTSNLRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFSSLVISCGRSGSLLMPNISKLVISFLCR 1245
Range 2: 513 to 1241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.0 bits(871) | 0.0 | 185/243(76%) | 0/243(0%) | Minus/Minus |
Query 143 QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF 871 Q+ M + M GIS+EPLLPQL+T+E KSSMN ISLPVGLSIS*R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKH E +RL +GVKL+K WQNFE ST *REPS TTDLA SKYL D GCEYIS QLPSGAKS S ILY *AQG +LSGEPT SGGITAVA+S+LGL TS+K +RS IDQ**ISS RKRFLAPVEITRGTN S ESP+PF Subject 513 QRNDMTNLEMLGISKEPLLPQLITNEEKSSMNFISLPVGLSIS*RSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHLKFEVKRLPMGVKLSKWWQNFE*MISTK*REPSGSTTDLAFSKYLHDKGCEYISFQLPSGAKSS*SSLILY**AQGLRLSGEPTSTSGGITAVAKSILGLATSKKFIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF 1241
Range 3: 469 to 834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 61/122(50%) | 0/122(0%) | Minus/Minus |
Query 99 SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK 464 SS + + *Q L*+H PV I SKE L N +L+ PRV AFRR N+ F G + C+KH +H QE +IA PVMNFIM+KKIP TC +H RDQ E +TN+ LA+++ +TR YHK Subject 469 SSLQ*VSA*QRL*VHLIPVAIWSKEQLIITNFVLIGPRVKAFRRTNQHFWGDHRSCQKHTWLSHIQEIYQIAN*PVMNFIMQKKIPSTCGNHARDQPPECTGVTNAFLANDLA*FVTRTYHK 834
Range 4: 880 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 54/122(44%) | 0/122(0%) | Minus/Minus |
Query 510 SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M 875 S+EE *L +V H QRAT T Y+ * KILNEF ++KLT+ L R L+ L + +K+Y +IMMH K +H *R +I A +KT +TP V KI GEA+ V+AEF*+ Subject 880 SAEE*YD*LRDVRHKQRATPPTAYN**GKILNEFYFSPCGLINKLTKLCLSRLLVWLLKSP*VKVYLGYDIMMHWKTTVHATA*RFKILYAYCIKTRKTPQV*GQKIAYGGEAKQVVAEF*V 1245
Range 5: 458 to 1120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 99/221(45%) | 0/221(0%) | Minus/Minus |
Query 88 R*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH 750 +* D P+Q P A * +K I +HHDA E++ A LE D C QN++NT + +D G*S S GRIL+ ++P SV+ Q PQI* + +T VV+T H+S H EQRA F T +PKG FQE+Q G L +A A*P P DR TSNEFHH EKDS HL +S GP S +HQ SC* G H*+L QIQ H Subject 458 Q*VDEALPQQTPCLAS*ESLSKGISWLRHHDALENNCACHGLEVQDPLCLLHQNQKNTSSLRSKDCLWG*S*ASGGRILSE*YQPSSVSRQAVPQI*PSVSICMTKVVSTSHSSCHLEQRAADHH*FCTDRPKG*GFQENQPALLGGSPQLPKAYLA*PHPRNLSDR*LTSNEFHHAEKDS*HLWKSRAGPTSGVYWSHQCLSC**FGLICH*NLSQIQIH 1120
Range 6: 1145 to 1213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 13/23(57%) | 0/23(0%) | Minus/Minus |
Query 775 CLALAESHFFHNL*QVKQNPQ*I 843 C A A+SH H+L* +++NPQ*I Subject 1145 C*A*AKSHSSHSL*LMRKNPQ*I 1213
Range 7: 758 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 73/163(45%) | 0/163(0%) | Plus/Plus |
Query 388 CSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE 876 CSLL+M TG++C HN C +LDLW L HA +S QNSA T ASP IF* T GV VL A +I +L* C F+CIMM +Y F * +S R+L R++ V+L + + NSLRI H * V VALC C T S* SS E Subject 758 CSLLQMATGMRCTHNLCHADTY*RLDLWYCLTAHATWLISFTQNSATTCLASPP*AIF*PQT*GVFLVLMQ*A*RILNL*AVACTVVFQCIMMS*PRYTFT*GLLRSQTRSLLRQSFVNLLISPQGEK*NSLRIFPH*L*AVGGVALCLCLTSLS*SYHSSAE 1246
Range 8: 509 to 685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 32/59(54%) | 0/59(0%) | Plus/Plus |
Query 139 ARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*YP 315 AR+ LV S WS * QV GIFF MMKFITG AI SW WL CF Q * P Subject 509 ARKALVTPVHSGGWSRA*FPQVLGIFFCMMKFITGQLAI**ISWMWLSQVCFWQLR*SP 685
Range 9: 468 to 923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 74/152(49%) | 0/152(0%) | Plus/Plus |
Query 98 ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ 553 IC K ** + P QE +W* E+GP+ D +RC ESFS **NSLLV RS G G*A++A N + P + W S*K PLGL V N * ALCS W L *+V TT V + *ICG * TL G KILP L LHP++ Subject 468 ICDKF**QIKPNH*QERHW*LQYTPEVGPARDFHRC*ESFSA**NSLLVN*RSDKFLGCG*AKYAFGNCGDPPRSAGWFS*KP*PLGLSVQN***SAALCSRWQLE*DVLTTFVMQILTEG*ICGTA*RLTLLG*YHSLKILPPLA*LHPHR 923
Range 10: 1005 to 1229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 30/75(40%) | 0/75(0%) | Plus/Plus |
Query 635 YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASH 859 +A L S AS*C +I L ++ +A G+C G+ +S Y + + + IH*GF +KLW++WL A A H SH Subject 1005 HAQLFSSAS*CRNQDIPLLKDS*EARQGVC*GKASSTY**AHRERNKIH*GFFLISYKLWEEWLFAYA*HL*VSH 1229
Nucleotide Sequence (140 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
112.4 | 564.0 | 54% | 3.066e-24 | 91% | KX274275.1 | |
98.2 | 521.4 | 54% | 5.789e-20 | 83% | AY368590.1 | |
73.5 | 175.9 | 33% | 1.626e-12 | 46% | AY881627.1 | |
73.5 | 239.3 | 30% | 1.626e-12 | 50% | FR691076.1 | |
73.5 | 312.3 | 29% | 1.626e-12 | 54% | KR528585.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 5144 to 5281 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 43/46(93%) | 0/46(0%) | Minus/Minus |
Query 2 ISLHGVPSTPSFQPSWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRN 139 ISLHGVPSTPSFQP+WPW IPSYLMGYGF*TIPHL+IQTQAPQLRN Subject 5144 ISLHGVPSTPSFQPTWPWSIPSYLMGYGF*TIPHLNIQTQAPQLRN 5281
Range 2: 5143 to 5280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 43/46(93%) | 0/46(0%) | Minus/Minus |
Query 1 SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI 138 SHFTVFLQRHLSNPPGPG FQVT*WDMGF+PFLI* FRLKLLNFAI Subject 5143 SHFTVFLQRHLSNPPGPGRFQVT*WDMGFKPFLI*TFRLKLLNFAI 5280
Range 3: 5144 to 5281 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 43/46(93%) | 0/46(0%) | Plus/Plus |
Query 2 IAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*D 139 IAKLRSLSLN QMRNG KPISH*VTWN+PGPGGLERWR*RNTVK*D Subject 5144 IAKLRSLSLNVQMRNGLKPISH*VTWNRPGPGGLERWR*RNTVK*D 5281
Range 4: 5145 to 5282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 42/46(91%) | 0/46(0%) | Plus/Plus |
Query 3 LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQEGWKDGVEGTP*SEM 140 LRS*GA*V*M K*GMV NPYPIK*LGI+QGQ GWKDGVEGTP*SEM Subject 5145 LRS*GA*V*MFK*GMV*NPYPIK*LGIDQGQVGWKDGVEGTP*SEM 5282
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 5144 to 5281 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 39/46(85%) | 0/46(0%) | Minus/Minus |
Query 2 ISLHGVPSTPSFQPSWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRN 139 ISLHGVPS PSFQP+WP LIP YLMGYGF*TIPH SIQTQ PQ RN Subject 5144 ISLHGVPSMPSFQPTWPLLIPDYLMGYGF*TIPHSSIQTQVPQPRN 5281
Range 2: 5143 to 5280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 39/46(85%) | 0/46(0%) | Minus/Minus |
Query 1 SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI 138 SHFTVFLQ HLSNPPGP *FQ+T*WDMGF+PFLI AFRLK LN AI Subject 5143 SHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 5280
Range 3: 5144 to 5281 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 39/46(85%) | 0/46(0%) | Plus/Plus |
Query 2 IAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*D 139 IA+LR+LSLNA+MRNG KPISH*V WNQ GPGGLERW *RNTVK*D Subject 5144 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK*D 5281
Range 4: 5145 to 5282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 38/46(83%) | 0/46(0%) | Plus/Plus |
Query 3 LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQEGWKDGVEGTP*SEM 140 LR *G *V*ML+*GMV NPYPIK* GIN+GQ GWKDG+EGTP*SEM Subject 5145 LRG*GT*V*MLE*GMV*NPYPIK*SGINKGQVGWKDGIEGTP*SEM 5282
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 3
Range 1: 5188 to 5280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 30/31(97%) | 0/31(0%) | Plus/Plus |
Query 46 WFKTHIPLSNLESTRARRVGKMALKEHREVR 138 WFKTHIPLSNLESTRAR VGKMALKEHREVR Subject 5188 WFKTHIPLSNLESTRARWVGKMALKEHREVR 5280
Grapevine rupestris stem pitting associated virus complete genome, genomic RNA, isolate GRSPaV MG
Sequence ID: FR691076.1 Length: 8749 Number of Matches: 4
Range 1: 5188 to 5280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 30/31(97%) | 0/31(0%) | Plus/Plus |
Query 46 WFKTHIPLSNLESTRARRVGKMALKEHREVR 138 WFKTHIPLSNLESTRAR VGKMALKEHREVR Subject 5188 WFKTHIPLSNLESTRARWVGKMALKEHREVR 5280
Range 2: 5187 to 5276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 25/30(83%) | 0/30(0%) | Minus/Minus |
Query 45 TSRCSFNAIFPTLLALVDSKLLNGIWVLNH 134 TSRCSF AI PT LALVDSKLL G+WVLNH Subject 5187 TSRCSFKAILPTHLALVDSKLLKGMWVLNH 5276
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 5
Range 1: 5170 to 5262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 30/31(97%) | 0/31(0%) | Plus/Plus |
Query 46 WFKTHIPLSNLESTRARRVGKMALKEHREVR 138 WFKTHIPLSNLESTRAR VGKMALKEHREVR Subject 5170 WFKTHIPLSNLESTRARWVGKMALKEHREVR 5262
Range 2: 5125 to 5262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 25/46(54%) | 0/46(0%) | Minus/Minus |
Query 1 SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI 138 +H + Q H ++PPGPG* Q+T D+GF+PF I*AF L L NF I Subject 5125 THLPMLFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTI 5262
Range 3: 5169 to 5258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 24/30(80%) | 0/30(0%) | Minus/Minus |
Query 45 TSRCSFNAIFPTLLALVDSKLLNGIWVLNH 134 TSRCSF AI PT LALVDS+LL G+WVLNH Subject 5169 TSRCSFKAILPTHLALVDSRLLRGMWVLNH 5258
Nucleotide Sequence (1428 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1106.7 | 6115.1 | 28% | 0 | 91% | KX274275.1 | |
1096.2 | 5569.4 | 28% | 0 | 77% | AY368590.1 | |
1071.9 | 4398.3 | 34% | 0 | 48% | KR528585.1 | |
1064.6 | 3744.5 | 35% | 0 | 49% | KX925556.1 | |
1061.8 | 3671.8 | 32% | 0 | 44% | JX559646.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 11
Range 1: 4261 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1106.7 bits(2409) | 0.0 | 474/475(100%) | 0/475(0%) | Plus/Plus |
Query 2 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 1426 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQD+DCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH Subject 4261 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDEDCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 5685
Range 2: 4300 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1033.0 bits(2248) | 0.0 | 443/462(96%) | 0/462(0%) | Minus/Minus |
Query 41 VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP 1426 VLRLH+N*GNIQQPIPTRST MIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAP FCSFDLRL*KFKTFPN HEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVF+KELLGRFITTSHFTVFLQRHLSNPPGPG FQVT*WDMGF+PFLI* FRLKLLNFAI+ILAKEKH+L*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTG+VH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGA FEVTG*S*IKH IYKP ALQVVPI*L FEQPQYVTLF QNSSIFLRIICALTRITSKRDESVTA+NKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGN+IP Subject 4300 VLRLHKN*GNIQQPIPTRSTRMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAP*FCSFDLRL*KFKTFPNSHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPGRFQVT*WDMGFKPFLI*TFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGNVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGAFFEVTG*S*IKHWIYKPSALQVVPI*LSFEQPQYVTLFGTQNSSIFLRIICALTRITSKRDESVTADNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNNIP 5685
Range 3: 4260 to 5120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
661.3 bits(1437) | 0.0 | 286/287(100%) | 0/287(0%) | Minus/Minus |
Query 1 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 861 +TFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH Subject 4260 MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 5120
Range 4: 5187 to 5687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
390.5 bits(846) | 0.0 | 166/167(99%) | 0/167(0%) | Minus/Minus |
Query 928 QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1428 QC*DF+KIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH Subject 5187 QC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 5687
Range 5: 4349 to 5686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1000.0 bits(2176) | 0.0 | 432/446(97%) | 0/446(0%) | Minus/Minus |
Query 90 SVETS*KLGQHPATNPYKIYRNDXXXXXXXXXXXFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 1427 SVETS*KLGQHPATNPYKIY+NDFLLSLHFCLLSFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRA ILQLRLEALKI*DVS*+P*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCV QRTVGSFHNHISLHGVPSTPSFQPTWPW IPSYLMGYGF*TIPHL+IQTQAPQLRN HLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWS F*SYRVILNQT DLQT GSPSCTYMT LRATSICHSV+ PK*LYLFENHMCFDKDHQQER*KRHC *QEDIDRCNQEGIAELHQRSRNDQP Subject 4349 SVETS*KLGQHPATNPYKIYQNDFLLSLHFCLLSFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRALILQLRLEALKI*DVS*QP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVHQRTVGSFHNHISLHGVPSTPSFQPTWPWSIPSYLMGYGF*TIPHLNIQTQAPQLRNPHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSLF*SYRVILNQTLDLQTFGSPSCTYMTFLRATSICHSVRHPK*LYLFENHMCFDKDHQQER*KRHCG*QEDIDRCNQEGIAELHQRSRNDQP 5686
Range 6: 4911 to 5687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
567.0 bits(1231) | 0.0 | 248/259(96%) | 0/259(0%) | Plus/Plus |
Query 652 EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL 1428 EH+RFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKG+AFPWPR* LRS*GA*V*M K*GMV NPYPIK*LGI+QGQVGWKDGVEGTP*SEMWL*NDPTVL* TQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHG *ETS*IFKASSRSCKI+ARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSF *IL*GLVAGCCPNF+EVSTL Subject 4911 EHYRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGHAFPWPR*GLRS*GA*V*MFK*GMV*NPYPIK*LGIDQGQVGWKDGVEGTP*SEMWL*NDPTVL**TQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGC*ETS*IFKASSRSCKIKARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFW*IL*GLVAGCCPNFYEVSTL 5687
Range 7: 4260 to 4874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
454.7 bits(986) | 0.0 | 197/205(96%) | 0/205(0%) | Plus/Plus |
Query 1 V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD 615 V*GGEGRQIKEGGLGC YL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCY Q*RFHLSCW*SLSKHI*FSKR*SYFG TE*HIEVARR+VI*VQLGEP+VCKS+V*FKITL*LQK LHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD Subject 4260 V*GGEGRQIKEGGLGCCYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYPQ*RFHLSCW*SLSKHI*FSKR*SYFGCRTE*HIEVARRKVI*VQLGEPKVCKSNV*FKITL*LQKRLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD 4874
Range 8: 4802 to 5578 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
563.3 bits(1223) | 0.0 | 251/259(97%) | 0/259(0%) | Plus/Plus |
Query 543 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL 1319 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**T PV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*R CFSLAKM IAKLRSLSLN QMRNG KPISH*VTWN+PGPGGLERWR*RNTVK*DVVMKRPNSSL NTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSW LGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL Subject 4802 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TLPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRSLSLNVQMRNGLKPISH*VTWNRPGPGGLERWR*RNTVK*DVVMKRPNSSLMNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWLLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL 5578
Range 9: 4466 to 4759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 92/98(94%) | 0/98(0%) | Plus/Plus |
Query 207 KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT 500 KAHMILKKIELFW NRVTY*GCSK SHIGTTWRA GL*I+CLIQDYPVTSK+AP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT Subject 4466 KAHMILKKIELFWVPNRVTY*GCSKESHIGTTWRAEGL*IQCLIQDYPVTSKKAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT 4759
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 11
Range 1: 4261 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1096.2 bits(2386) | 0.0 | 470/475(99%) | 0/475(0%) | Plus/Plus |
Query 2 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 1426 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQD+DCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSE+LSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLM EAVREFE KKASKSAATIENHSGRSCRDWLLDVALIFMKSQH Subject 4261 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDEDCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEKLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVREFEAKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 5685
Range 2: 4260 to 5120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
623.8 bits(1355) | 0.0 | 273/287(95%) | 0/287(0%) | Minus/Minus |
Query 1 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 861 +TFSQGSP SFSS TPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAV+K**SGFPAKCDRKLSTLKPV+FTRSRLWLKRDKAVNHRRSSV*KES D+RIPP LKF+PVDSPKVSVSCFIPK*D TIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVM+PFLKLQGNLESNIGFTNLRLSKLYLYDFPSS+LNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLR+TRRHRSM*PGGNS TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH Subject 4260 MTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRK**SGFPAKCDRKLSTLKPVIFTRSRLWLKRDKAVNHRRSSV*KESWDMRIPPYLKFSPVDSPKVSVSCFIPK*D*TIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMDPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSSLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRMTRRHRSM*PGGNSWTSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 5120
Range 3: 5187 to 5687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
378.6 bits(820) | 0.0 | 161/167(96%) | 0/167(0%) | Minus/Minus |
Query 928 QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1428 QC*DFMK+RATSS+QSLQDLPE*FSIVAALLLAFF+SNSRTAS IRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLN SLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDS+LLNGIWVLNH Subject 5187 QC*DFMKMRATSSSQSLQDLPE*FSIVAALLLAFFASNSRTASCIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNFSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLNH 5687
Range 4: 4300 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
934.9 bits(2034) | 0.0 | 396/462(86%) | 0/462(0%) | Minus/Minus |
Query 41 VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP 1426 +LRLHEN +IQQPIP RST MIFYCRCTFACFL LKFSHSF HQVCIVACIQW+L KESVK*K PIWLCAPQFCSF+LRL +FKTFP+ HE+GH*IITFMSWIYAFKSFTCIAQ LASSTP+F+KELLGRFITTSHFTVFLQ HLSNPPGP *FQ+T*WDMGF+PFLI AFRLK LN AI+ILA EKH+L*PRITT+L LSH FIPPNAN+E IKEVGLTGKQ+PYHILP F C*KVI+RFPSKMRQKAFHPQT +++*IKIVAKTR* CQPP IICVKG+M Y+NPS+LE+QPSRFTE KRELLHSKVGL+DFLF +A N*+GIQR L*SS*EEIMHIVENGVISK GSHG LFEVTG*S*IKH IY+PPALQVVPI*LPFEQPQYVTLFS QNSSIFLRIICALTRITSKRDESVTAN+KKT*IDVTR E*L+FIKDHAMTSL*ACNFPK+DFKGNDIP Subject 4300 MLRLHENESDIQQPIPARSTRMIFYCRCTFACFLCLKFSHSFMHQVCIVACIQWDLRKESVK*KFPIWLCAPQFCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQFLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAILILA*EKHDL*PRITTKLFLSHSFIPPNANVEAIKEVGLTGKQIPYHILPTFRC*KVIKRFPSKMRQKAFHPQTSNIY*IKIVAKTR*GCQPPTIICVKGVMGYENPSILEIQPSRFTEGKRELLHSKVGLNDFLFLEAGN*NGIQRTL*SS*EEIMHIVENGVISKGGSHGPLFEVTG*S*IKHWIYEPPALQVVPI*LPFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANDKKT*IDVTRGE*LDFIKDHAMTSL*ACNFPKKDFKGNDIP 5685
Range 5: 4349 to 5686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
868.0 bits(1888) | 0.0 | 381/446(85%) | 0/446(0%) | Minus/Minus |
Query 90 SVETS*KLGQHPATNPYKIYRNDXXXXXXXXXXXFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 1427 +VETS*K +HPA NP KIY+NDFLLSLHFCLLS PQILAQL ASGLHCGLHSV P KGKCQVK SHMALRASILQL+LEA +I*DVS*+P* RSLNHYLYVLDICFQIFHMHCSI+RFFHT V QRTVGSFHNHISLHGVPS PSFQPTWP LIP YLMGYGF*TIPH SIQTQ PQ RN HLG KA*PLAKDHH A PL+ LHSAQC* *+H*RSWAHREA+PLSHSP F LL+SD+AVSQQNATESFPPSN+* LDQDCG*NEI+LSTT DHLCER+H I*ESLH *+S Q*IHR+*A*VASFQSRT RFSF +S KL WHPK PLI*LRGNHAYCGKWRNQQ+RQSW+PF*SYRVILNQT DL+TSGSPSCTYMTSLRA SICHSVQ PK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQ GIA LHQRSRNDQP Subject 4349 NVETS*K*ERHPAANPCKIYQNDFLLSLHFCLLSLPQILAQLHASGLHCGLHSVGPSKGKCQVKISHMALRASILQLQLEASRI*DVS*QP*GRSLNHYLYVLDICFQIFHMHCSISRFFHTYVHQRTVGSFHNHISLHGVPSMPSFQPTWPLLIPDYLMGYGF*TIPHSSIQTQVPQPRNPHLGLRKA*PLAKDHHKAFPLALLHSAQC*R*SH*RSWAHREANPLSHSPHFSLLESDKAVSQQNATESFPPSNQ*YLLDQDCG*NEIRLSTTDDHLCERSHGI*ESLHT*NSAQ*IHRR*A*VASFQSRTERFSFPRSWKLEWHPKDPLI*LRGNHAYCGKWRNQQRRQSWTPF*SYRVILNQTLDLRTSGSPSCTYMTSLRAASICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQGGIAGLHQRSRNDQP 5686
Range 6: 4911 to 5687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
478.1 bits(1037) | 0.0 | 216/259(83%) | 0/259(0%) | Plus/Plus |
Query 652 EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL 1428 +++ FEGGKLSVAFCWETALSL NS+K GECDKG ASR*AQLL*W Q *HWAE*R RG+A+W*SLAKG+AF PR* LR *G *V*ML+*GMV NPYPIK* GIN+GQVGWKDG+EGTP*SEMWL*NDPTVL* T VWKKR IEQCM*KI*KHISKT*R**FSDL HG ETS*I +ASS SCKIEARKAIWE+FT*HFPF+G TECKPQCKPDA*SCARI*GKESKQKCSDNRKSF *IL GL AGC +FHEVSTL Subject 4911 KYYWFEGGKLSVAFCWETALSLSNSEKWGECDKGFASR*AQLL*WLQR*HWAE*RSARGKALW*SLAKGHAFLRPR*GLRG*GT*V*MLE*GMV*NPYPIK*SGINKGQVGWKDGIEGTP*SEMWL*NDPTVL**T*VWKKREIEQCM*KI*KHISKT*R**FSDLPHGCQETS*ILEASS*SCKIEARKAIWEIFT*HFPFEGPTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFW*ILQGLAAGCRSHFHEVSTL 5687
Range 7: 4260 to 4874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
407.5 bits(883) | 0.0 | 180/205(88%) | 0/205(0%) | Plus/Plus |
Query 1 V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD 615 V*G EGRQIKEGGLGCRYL*SL *ESYRPKGWSLRDL**S AIP WLHRSMSSC+SQ*RFHLSCW*SLSKHI*FSKR*SYFG *TE*HIE ARREVI*VQLGEPEV KS+V*FKITL*LQKG+HDCR C*LRHFPQYA*FPLS*IKG FGCH SF+L KENR VLLWNEATHAY R*IYW E Q WRDS+I * LSHR*S VVD Subject 4260 V*GSEGRQIKEGGLGCRYL*SLS*ESYRPKGWSLRDL**SPAIPPWLHRSMSSCHSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEAARREVI*VQLGEPEVRKSNV*FKITL*LQKGVHDCRLC*LRHFPQYA*FPLS*IKGSFGCHSSFQLRGKENRSVLLWNEATHAYLR*IYWAEFQVWRDSHIP*LLSHR*SSVVD 4874
Range 8: 4802 to 5578 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
471.6 bits(1023) | 0.0 | 217/259(84%) | 0/259(0%) | Plus/Plus |
Query 543 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL 1319 G* SSMEGF Y M PFTQMI GG*Q YLVLATILI** V*GWKAFCRILLGNR ITF*Q+K GRM**G CFPVSPTSLM S LALGGMK ER+S VVILG*R CFS AKM IA+LR+LSLNA+MRNG KPISH*V WNQ GPGGLERW *RNTVK*DVVMKRPNSSL N GVEEA N*AMHVKDLKAYIQDIKVMIQ*P SW GNVLN +SLK KLQN*GAQSHMG+FYLTLSF+R H*MQATMQT*C+KLCENL Subject 4802 G*ISSMEGFSYPMTPFTQMIVGG*QPYLVLATILI**ILLV*GWKAFCRILLGNRFITF*QRKVGRM**GICFPVSPTSLMASTLALGGMKECERKSFVVILG*RSCFS*AKMRIARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK*DVVMKRPNSSLMNIGVEEARN*AMHVKDLKAYIQDIKVMIQ*PSSWLSGNVLNSRSLKLKLQN*GAQSHMGNFYLTLSFRRSH*MQATMQT*CMKLCENL 5578
Range 9: 4466 to 4759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 87/98(89%) | 0/98(0%) | Plus/Plus |
Query 207 KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT 500 KAHMILKKIELFW LNRVTY*GCSKGSHIGTTWRAGG *I+CLIQDYPVTSKR P*LP LLITPFSTICMISS*LDQR LWMP *F A +KRKS SPT Subject 4466 KAHMILKKIELFWVLNRVTY*GCSKGSHIGTTWRAGGS*IQCLIQDYPVTSKRGP*LPPLLITPFSTICMISS*LDQRVLWMPF*FPASRKRKSFSPT 4759
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 12
Range 1: 4243 to 5667 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1071.9 bits(2333) | 0.0 | 457/475(96%) | 0/475(0%) | Plus/Plus |
Query 2 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 1426 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLD ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQD+DCEVEE+ESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSKVPLNASHN+N+ EAVREFE KKASKSAATIENH+GRSCRDWLLDVALIFMKSQH Subject 4243 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDVILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQDEDCEVEEMESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKVPLNASHNSNMFHEAVREFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQH 5667
Range 2: 4242 to 5102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
591.2 bits(1284) | 0.0 | 260/287(91%) | 0/287(0%) | Minus/Minus |
Query 1 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 861 +TF+ GSPH+FSSLTPSF PMLTLKPLKKLGSPGSKS +TFSPL AVKK * G PAKC+RKLSTLKPV+FT+S+LWLKRD+AV+H RSSV*KES D+RIPP LKF+PVDSPKVSVSCFIPK*D TIFFSSKLETRM SKGPFDLAKRKSCIL KMA*SAKAAVMEPFLKLQG+LESNIGFTNLRLSKLYLYDFPSS+LNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH Subject 4242 MTFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMTFSPLLAVKKW*RGLPAKCERKLSTLKPVIFTKSKLWLKRDRAVSHLRSSV*KESWDMRIPPYLKFSPVDSPKVSVSCFIPK*D*TIFFSSKLETRMTSKGPFDLAKRKSCIL*KMA*SAKAAVMEPFLKLQGSLESNIGFTNLRLSKLYLYDFPSSSLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 5102
Range 3: 5169 to 5669 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
282.4 bits(610) | 0.0 | 126/167(75%) | 0/167(0%) | Minus/Minus |
Query 928 QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1428 QC DF+KIRATS++QSL DLP *FSIVAALLLAFF+SNSRTAS L LAFSGT +RK S++NFPYG AR + AAST GFENLRRF TA+RKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V S*P TSRCSF AI PTHLALVDS+LL G+WVLNH Subject 5169 QCCDFIKIRATSNSQSLHDLPA*FSIVAALLLAFFASNSRTAS*NMLEL*LAFSGTLDRKESNRNFPYGLARRSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VTS*PQRTSRCSFKAILPTHLALVDSRLLRGMWVLNH 5669
Range 4: 4282 to 5667 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
696.2 bits(1513) | 0.0 | 311/462(67%) | 0/462(0%) | Minus/Minus |
Query 41 VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP 1426 VLRLH+N NI QPIP T MI Y CT L LK H F V I+ I W+ ++ V *+LPIWL P F SF+L L KF+T + H++G+*II+FM W+ AFK TCIAQLL SST + +KELL FITT+H + Q H ++PPGPG* Q+T D+GF+PF I*AF L L NF I+IL +EKH+ *P +TTQLLL + FI NAN++ +EV LT +QV Y ILP F C +V++ F SK+ +K FHPQ D+H*I+IVAK R*S +PP IICVKGIM Y+NP +LE+QP RFTE KRELLHSKVGL+DFLF +A N*+ IQR L*SS*++IMHIV+NGVISKSGSHGA FEVTG*S*IKHRIY+PPALQVVPI*LPFEQPQYVTLFS QNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTR E*LNFIKDHAMTSL*ACNFPK++FKG++IP Subject 4282 VLRLHKNQSNI*QPIPA*PTCMILYSCCTLTSLLRLKLPHCFMKHVGIMTSI*WDFRQKGV**ELPIWLGPP*FGSFNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPMLFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHDF*PWVTTQLLLPNTFILSNANVKATEEVRLTWEQVSYDILPTFGCQEVVKGFASKV*EKTFHPQARDIH*IQIVAKAR*SSEPPPIICVKGIMGYENPPILEIQPCRFTEGKRELLHSKVGLNDFLFLEAGN*NDIQRTL*SS*KKIMHIVKNGVISKSGSHGAFFEVTG*S*IKHRIYEPPALQVVPI*LPFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRGE*LNFIKDHAMTSL*ACNFPKKNFKGDNIP 5667
Range 5: 4242 to 4850 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.9 bits(838) | 0.0 | 175/203(86%) | 0/203(0%) | Plus/Plus |
Query 1 V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPV 609 V*GGEGRQIKEGGLGC +L*S *ESYRPKGWSLRDL**SSAIP WLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFG *TE*HIE ARREVI*VQLGEPEV KSDV*FK TL*LQK LHDCRFC*LRHF QYA*F S*IKG FGCH SF+L KENR VLLWNEATHAY R*IY E Q W DS+I *FLSHR*S V Subject 4242 V*GGEGRQIKEGGLGCCHL*SFS*ESYRPKGWSLRDL**SSAIPPWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEAARREVI*VQLGEPEVRKSDV*FKTTL*LQKRLHDCRFC*LRHFSQYA*FSFS*IKGSFGCHSSFQLRGKENRSVLLWNEATHAYLR*IYRAEFQVWGDSHIP*FLSHR*SEV 4850
Range 6: 4893 to 5477 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 101/195(52%) | 0/195(0%) | Plus/Plus |
Query 652 EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEV 1236 E+H EGGK S+ CW+T L L +S+K GEC LA R*A LL W *HW E*R GE VW* + K +AFP R* L S* V MLK* MV NP+P +* G+NQGQVG +G+E +WL*+D T+L* W A EQCM*++*KH+ K *R *F++L +G + S IF+A SC+ A +AIWEV Subject 4893 EYHGLEGGKFSLTLCWQTPLPLLDSQKWGECHTRLAPR*A*LLQWL*R*HWKE*RC*GGEVVW*PMVKSHAFPGSR*GL*S*RDGVRMLK*RMV*NPHPPE*SGVNQGQVGG*NGLERASGGALWL*SDSTIL**A*RWNW*ATEQCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*SCQTTAGQAIWEV 5477
Range 7: 5538 to 5669 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 21/44(48%) | 0/44(0%) | Plus/Plus |
Query 1297 A*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL 1428 +*S A +*G+E +CS+ R+S R*++ GL CC +F+EV+TL Subject 5538 S*SSAGV*GEEG**ECSNYRESCR*VMQGLAVRCCSDFYEVATL 5669
Range 8: 4331 to 5482 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
579.3 bits(1258) | 0.0 | 262/384(68%) | 0/384(0%) | Minus/Minus |
Query 90 VKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 1241 + TSHMA A + QL+ A KI*D +P* R LNH+LY L CFQ HMHCS+A FH QR V S HNH + S P + PTWPWL P Y G GF*TI HLSI T + QL N HL GKA* L HHT SP LHS QC* *+H*RS AH AS + HSP F L +S + V QQ+ E+FPPS+ * SL+ +CG*+EI+ T DHLCERNH I*ES H *+S *IHR+*A*VASFQSRT RFSF +S KL HPK PLI*L+ NHAYC KWRNQQKRQSWS F*SYRV+LNQTSDL+TSGSPSCTYMTSLRA SICHSVQ PK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQ GIAELHQRSRNDQP Subject 4331 IGTSHMAWPAVVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHLYAHQRIVESLHNHNAPPDALSRPFYPPTWPWLTPDYSGGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHTTSPP*HLHSFQC*R*SH*RS*AHLGASLV*HSPHFWLSRSGKGVCQQSVRENFPPSSP*YSLNPNCG*SEIEQ*ATSDHLCERNHGI*ESPHT*NSAL*IHRR*A*VASFQSRTERFSFPRSWKLE*HPKDPLI*LKENHAYCEKWRNQQKRQSWSLF*SYRVVLNQTSDLRTSGSPSCTYMTSLRAASICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQGGIAELHQRSRNDQP 5482
Range 9: 5600 to 5668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 12/23(52%) | 0/23(0%) | Minus/Minus |
Query 1359 SVETS*KLGQHPATNPYKIYRND 1427 SV TS*K QH NP Y +D Subject 5600 SVATS*KSEQHLTANPCMTYLHD 5668
Range 10: 4784 to 5560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.2 bits(568) | 0.0 | 142/259(55%) | 0/259(0%) | Plus/Plus |
Query 543 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL 1319 G* SSM GF Y MIPFTQMI GG LYL LATI I** S *GWK F LL N T *Q K GRM TC VS TS + LAL MK RRSCVV G*+ CFS KM I KL+ S NAQM+NG KP S *V W+QPGPGG +W *++ + VVMK N+SL + VE SN*AMHV+ LKA+ Q IK MIQ*P W +V NF+S + KL N G SHMGS Y T + H*M + T +K C +L Subject 4784 G*ISSMGGFSYPMIPFTQMIGGGSLLYLALATIWI**ISRA*GWKVFSHTLLANPFTTS*QPKVGRMSYETCSQVSLTSSVALTLALERMKVLGRRSCVVTHG*KSCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLKLPNYGGPSHMGSSY*TPFCLKSH*MLVIIPTCFMKQCGSL 5560
Range 11: 4448 to 4741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 85/98(87%) | 0/98(0%) | Plus/Plus |
Query 207 KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT 500 KAHMILKKIELFW LNRVTY*GCSKGSHIGTTWRAGG *IRCLIQDYPVTSK+AP*LPLLLITPF TICMI *LDQR LWM *F A +KRKS SPT Subject 4448 KAHMILKKIELFWVLNRVTY*GCSKGSHIGTTWRAGGS*IRCLIQDYPVTSKKAP*LPLLLITPFFTICMIFF*LDQRVLWMSF*FPASRKRKSFSPT 4741
Grapevine rupestris stem pitting associated virus isolate TEMP BR replicase, 24.4 kDa protein, 12.8 kDa protein, 8.4 kDa protein, and 28 kDa protein genes, complete cds
Sequence ID: KX925556.1 Length: 8700 Number of Matches: 12
Range 1: 4250 to 5674 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1064.6 bits(2317) | 0.0 | 450/475(95%) | 0/475(0%) | Plus/Plus |
Query 2 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 1426 CKV KAGKSKKEGWDVVTFEVFLRKV+ LKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVS+G+NEG+REEKLCGDPWLKVMLFLGQD+DCEVEE+E ECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCG+E TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSKVPLNASHN+N++ EAVREFE KKASKSAATIENHSGRSCRDWLLDVALIFMKSQH Subject 4250 CKVAKAGKSKKEGWDVVTFEVFLRKVSSLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSLGKNEGIREEKLCGDPWLKVMLFLGQDEDCEVEEMEMECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGHEVTQQFFDEHRGGAGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKVPLNASHNSNMLNEAVREFEAKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 5674
Range 2: 4252 to 5109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
543.6 bits(1180) | 0.0 | 236/286(83%) | 0/286(0%) | Minus/Minus |
Query 4 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL 861 ITFS GSPH+FSSL PSF P LTLKPLKKLGSPGS+S +TFSPL AVKK * G PAKC+RKLSTLKPVMFT+S+LWLKRDKAV+HRRSSV*KESCDIRIPPCLKF+PVDSP V VSCFIPK*DWTIFFSSKLETRMASKGPFDLA+RKSCILWK+A*SAKAAV+EPFLK GNL+SNIGFT LS LYLY FPSS+L++SLCSAP+IA SF ESYVL GSPA EMKASLR+T +HRS+ PGGNS*TSSKITQ*PAF+ TFLRKTSKVTTS PSFFDLPA TL Subject 4252 ITFSHGSPHNFSSLIPSFLPRLTLKPLKKLGSPGSRSRMTFSPLLAVKKW*RGLPAKCERKLSTLKPVMFTKSKLWLKRDKAVSHRRSSV*KESCDIRIPPCLKFSPVDSPNVRVSCFIPK*DWTIFFSSKLETRMASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGNLDSNIGFTKRLLSMLYLYVFPSSSLSISLCSAPRIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNS*TSSKITQ*PAFKLETFLRKTSKVTTSHPSFFDLPALATL 5109
Range 3: 5176 to 5676 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.5 bits(632) | 0.0 | 131/167(78%) | 0/167(0%) | Minus/Minus |
Query 928 QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1428 QC DF+KIRATS++QSL DLPE FSIVAALLLAFF+SNS TAS L LAFSGT +RK SSKNFPYGFARLN AAST GFENLRRF TAMRKV ES PLCLG MLSNLSHALL+CS P LCSSKNC V S P TSRCSF AI PTHLALVDSKLL G+WVLNH Subject 5176 QCCDFIKIRATSNSQSLHDLPEWFSIVAALLLAFFASNSLTASLSMLEL*LAFSGTLDRKESSKNFPYGFARLNLAASTWGFENLRRFRTAMRKVMESFPLCLG*MLSNLSHALLSCSPAPPLCSSKNCCVTSWPQRTSRCSFKAILPTHLALVDSKLLKGMWVLNH 5676
Range 4: 4289 to 5674 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
545.0 bits(1183) | 0.0 | 253/462(55%) | 0/462(0%) | Minus/Minus |
Query 41 VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP 1426 +L LH+N* NIQQPIP M+ Y CT FL + H V IV I WNL +E ++*+LPIW C PQF F+L L*KF+TF N HE+G+ II+FM W+ AFKSFTCIAQLL S+T V +KELL + T+H + H ++PPG G* Q+ * D+GFEPF I*AF L NF I+IL +EKHN P IT QLLLS+ I A+IETI+EV LT KQV Y IL F C KV++ F SKM +K FHPQT +V+ I+I+A+ R*S +PP+I+ +KGIM*YK+ M EVQPS FT+ K EL H KVGLD FL K N*+GIQ * EE+MHI+E+ +ISK SH FEVT *S KH ++K PA VVP+ L F+Q +Y+TL S+QN +I L IICAL ITSK DES+TA +K T*ID++R + LN I++H MT L NF KE+ K + IP Subject 4289 ML*LHKN*SNIQQPIPA*PA*MVLYSCCTLTGFLCFELPHCLIKHVGIVTGI*WNLRQEGIQ*ELPIWFCPPQFGRFNLGL*KFETFSNSHEEGYGIISFMPWVNAFKSFTCIAQLLTSTTSVLIKELLRYLMATAHLPMLF*GHFAHPPGSG*LQIA*GDVGFEPFFI*AFHFHLFNFTILILTQEKHNFQPWITAQLLLSNSLIFTKADIETIEEVRLTWKQVSYDILSTFSCQKVVKGFASKM*EKTFHPQTCNVYQIQIMAEAR*SSKPPSIVSMKGIM*YKDSPMFEVQPS*FTKCKSELFHPKVGLDYFLLLKTGN*NGIQGPF*PRQEEVMHIMEDCIISKGSSH*TFFEVTW*SRFKHWVHKTPAFYVVPVRLSFKQSEYITLLSSQNCTILL*IICALAWITSK*DESITAYDK*T*IDISRGKQLNLIENHTMTGLQTRNFSKENLKSHHIP 5674
Range 5: 4900 to 5676 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
257.2 bits(555) | 0.0 | 133/259(51%) | 0/259(0%) | Plus/Plus |
Query 652 EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL 1428 +H+RFEGGK S+ FCW+T L LF+S K EC ASR*A LL WFQC W +* RGE V *S+A+ YAFP R* L S* MLK* MVQNP+P+K G+NQ QVG ++G++ +W * + +L* Q W A EQCM*KI*KH+ K *R *F +L HG +TS IFKA S +IEA K IWEV T P GST+C+ Q + * + KES+ +CS+ R+ FR ++ GL GCC NF+EV+TL Subject 4900 KHYRFEGGKFSLTFCWQTPLPLFDS*KWRECHTRPASR*A*LLQWFQCQPW*K*GN*RGEVVR*SMAESYAFPGSR*GL*S*RDGNGMLK*RMVQNPHPLKQFGVNQSQVGGQNGLKRASGGALWP*GNAAIL**AQRWCW*AAEQCM*KI*KHLPKA*RK*FHNLPHGCSKTSQIFKAPG*SGQIEAGKTIWEVLTGFLPV*GSTKCQSQFQHA**GSEGVRSKESQ*ECSNYREPFRQVMQGLAVGCCSNFYEVTTL 5676
Range 6: 4261 to 4842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.9 bits(430) | 0.0 | 95/194(49%) | 0/194(0%) | Plus/Plus |
Query 13 EGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSH 594 + RQIKEG +GC * P*+S+ +G SL D * SA+ W++RSM +C++Q* FHL+CW*S+ +HI*F+K G * E*+ + A R+ + VQ + C+ +V* IT+ LQK +DC C*L + P YA* P +K GCH SF+ * +EN PVLLW+E H+Y *I W ELQ W + YIT*FLS+ Subject 4261 QSRQIKEGRVGCGDF*GFP*KSF*FEGRSLCDFR*GSAVSPWIYRSMFTCHTQ*CFHLTCW*SMPEHI*FTKGSCNSGS*AE*YTQTA*RKDVQVQHRKQAFCEPNV*I*ITMSLQKRFNDCCLC*LCNLP*YA*LPPGEVKRALGCHSSFQF*GEENSPVLLWDETAHSYIW*INWAELQTWGNPYIT*FLSY 4842
Range 7: 4338 to 5534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
387.3 bits(839) | 0.0 | 205/399(51%) | 0/399(0%) | Minus/Minus |
Query 90 HCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 1286 +C H VEP G+ V+TSHM L ASI L+ ALKI*DV +P* R NH+LY L CFQIFHMHCS A H C QR H H + P PTW WL P+ L G GF*TI HLSI + QL N HL GKA* A DH T SPL H Q *H*NH*RS AH EA + HS F L KS + V QQN E+FPPSN *C + + G*+EIK T D ERNHVI* H *SS Q IH+ * * S QSRTG FS Q+ KL WHP+ L G+HAY G+ NQQ++QS + F*S VI QT Q + CT + L+A + HS Q P+ F NHMC DHQQ R*K HC *Q +IDR Q AE H++S ND+P Subject 4338 NCDWHLVEP*TGRNPVRTSHMVLPASIWPLQPGALKI*DVFEQP*GRLWNHFLYALGKCFQIFHMHCSAAHQHHLCAHQRIAALPHGHSAPPDALLRPFCPPTWLWLTPNCLRGCGF*TILHLSIPFPSLQLHNPHLDPGKA*LSAMDHRTTSPL*FPHFYQG*H*NH*RS*AHLEAGLV*HSLHF*LSKSGKGVCQQNVRENFPPSNL*CLPNPNYG*SEIKQ*ATVDRQYERNHVI*GFPHV*SSAQLIHQM*E*AVSSQSRTGLFSSPQNWKLEWHPRALLTSPGGSHAYYGRLHNQQRQQSLNLF*SDMVI*IQTLGSQNACFLCCTCTSFLQAV*VYHSAQLPELHDPFVNHMCSGMDHQQVR*KHHCV*QVNIDRYIQGETAEPHRKSHNDRP 5534
Range 8: 5628 to 5675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Minus |
Query 1380 SVETS*KLGQHPATNP 1427 +V TS*KL QHP NP Subject 5628 NVVTS*KLEQHPTANP 5675
Range 9: 4791 to 5540 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
269.6 bits(582) | 0.0 | 141/250(56%) | 0/250(0%) | Plus/Plus |
Query 543 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT 1292 G*TS+M LYHMIPF I GG LYL A I I *T V*GWK F ILL N TF*Q K RM TCF VS TS MVSM AL M+ ERRSC VI G*+LCFS KM I KL+ NAQM+NGSKP S * W+QP PGG +W *++ + V M+ ++SL +T V S+*AMHVKDLKA+ Q IK MI *P SW NV NFQS + K N*G Q+HMGS Y S RFH*M T+ T Subject 4791 G*TSNMGESLYHMIPFILTIDGGLLLYLASAIIWIW*TLQV*GWKVFSHILLANPFTTF*QLKVERMSYETCFQVSLTSSMVSMSALVKMRELERRSCAVIHG*KLCFSWVKMRIVKLKRWKWNAQMKNGSKPTSP*AIWSQPEPGGWAKWP*KSIGRCAVAMR*RSNSLMSTEVVLVSS*AMHVKDLKAFTQGIKEMIP*PSSWLFENVSNFQSPRLKRPN*GGQNHMGSSYWIPSCLRFH*MPVTIPT 5540
Range 10: 4455 to 4748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 53/98(54%) | 0/98(0%) | Plus/Plus |
Query 207 KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT 500 +AHMI K+I FW L+RV Y C K GTT +AG L* +CL DY VTSK+ *L LLI S ICM SS Q+ WMP *F L++RK SSPT Subject 4455 RAHMIHKRIVQFWELSRVIYSDCLKERRTGTT*KAGVL*TQCLNLDYHVTSKKVQ*LLPLLIMQSSIICMTSSWRGQKGPWMPF*FPVLRRRK*SSPT 4748
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 13
Range 1: 4261 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1061.8 bits(2311) | 0.0 | 450/475(95%) | 0/475(0%) | Plus/Plus |
Query 2 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 1426 CKV KAGKSKKEGWDVVTFEVFLRKV+GLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDIL+LLEGK+YRYN+ESRRFVNPMF+SRLPC FKKGSMTAAFADYAIFHNMHDFLLARSKGPLDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIG+NEGVREEKLCGDPWLKVMLFLGQD+DCEVEE+E ECSNEEWFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSKVPLNA+HN+N+ EAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH Subject 4261 CKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILKLLEGKTYRYNIESRRFVNPMFESRLPCLFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQDEDCEVEEMEEECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEVTQQFFDEHRGGAGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKVPLNANHNSNMFNEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 5685
Range 2: 4263 to 5120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
533.5 bits(1158) | 0.0 | 233/286(81%) | 0/286(0%) | Minus/Minus |
Query 4 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL 861 ITFS GSPH+FSSLTPSF PMLTLKPLKKLGSPGS+S +TFSPL AVKK * G PAKC+RKLSTLKPVMFT+S+LWLKRDKAV+HRRSSV*KESCD+RIPP LKFNPVDSP V VSCFIPK*DWTIFFSSKLETR ASKGPFDLA+RKSCIL K+A*SAKAAV+EPFLK G+L+SNIGFT LS LYLY PSS+L+MSLCSAP+IA SF ESYVL GSPA EMKASLR+T +HRS+ PGGN+*TSSKITQ PAF+P TFLRKTSKVTTS PSFFDLPA TL Subject 4263 ITFSHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSRSRMTFSPLLAVKKW*RGLPAKCERKLSTLKPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVRVSCFIPK*DWTIFFSSKLETRTASKGPFDLARRKSCIL*KIA*SAKAAVIEPFLKRHGSLDSNIGFTKRLLSMLYLYVLPSSSLSMSLCSAPRIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQWPAFKPETFLRKTSKVTTSHPSFFDLPALATL 5120
Range 3: 5187 to 5687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
286.1 bits(618) | 0.0 | 130/167(78%) | 0/167(0%) | Minus/Minus |
Query 928 QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1428 QC DFMK+RATS++QSL DLPE FSIVAALLLAFFSSNSRTAS L LAFSGT +RK SSKNFPYGFARL+ AAST GFEN RRF TAMR V ES PLCLG MLSNLSHALL+CS P LCSSKNC V S*P TSR SF AI PTHLALVDSKLL G+WVLNH Subject 5187 QCCDFMKMRATSNSQSLHDLPEWFSIVAALLLAFFSSNSRTASLNILEL*LAFSGTLDRKESSKNFPYGFARLSLAASTWGFENFRRFRTAMRNVMESFPLCLG*MLSNLSHALLSCSPAPPLCSSKNC*VTS*PQRTSRYSFKAILPTHLALVDSKLLKGMWVLNH 5687
Range 4: 4300 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
534.9 bits(1161) | 0.0 | 246/462(53%) | 0/462(0%) | Minus/Minus |
Query 41 VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP 1426 +LRLHEN NIQQPIPT M+ Y RCT F FL+ H + IV I WNL +E ++*+LPIW C PQF F+L L*KF T N HE+ + II+FM W+ AFKSFTCI QLL S+T V +KELL I T+H + HL++PPG G* + * ++GFEPF I*AF L NF ++IL +EKHN P +TTQLLLS+ I PNA+IETI+EV LT KQV Y ILP F C*K+++RF SKM +K FHPQT DV+ I+I+A+ R S +PP+++ +KG+M*Y+N + E+QPS T+ + ELLH KVGLD FL KA N*+ IQ E++MHIV+N +ISKS SH LFE T *S KH ++K A VVPI L F+ +YVTL S+QN I L I+CAL IT K +ES+T +K+T*ID++R + LN I+++ M SL NF KE+ K + IP Subject 4300 MLRLHENESNIQQPIPT*PA*MVLYSRCTLTGFFFLELPHCLIEHIGIVIGI*WNLRQERIQ*ELPIWFCPPQFGCFNLGL*KF*TLSNSHEECYGIISFMPWVNAFKSFTCITQLLTSTTSVLIKELLSYLIATAHLPILF*GHLTHPPGSG*L*IA*GNVGFEPFFI*AFLFHLFNFTVLILTQEKHNFQPWVTTQLLLSNSLIFPNADIETIEEVRLTWKQVSYDILPTFSC*KMVKRFTSKM*EKTFHPQTCDVYQIQIMAEARQSSKPPSVVSMKGVM*YENSPIFEIQPS*LTKCESELLHPKVGLDYFLLLKAGN*NSIQGTFRPCQEKVMHIVKNCIISKSSSH*TLFEETW*SRFKHWVHKTSAFYVVPIRLAFK*FEYVTLLSSQNCPILL*IVCALAWITGK*NESITTYDKQT*IDISRGKQLNLIENYTMASLQTRNFSKENLKSHYIP 5685
Range 5: 4911 to 5687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 135/259(52%) | 0/259(0%) | Plus/Plus |
Query 652 EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL 1428 +HHRFEGGK S+ FCW T+L FNS K GEC ASR*A LL WFQC HW +* RGE VW* +A+ YAFP R* L S* MLK* MVQNP+ +K +NQ QVG DG++ +WL* + +L* Q W A E CM*KI*KH+ K *R *F ++ HG + S IFKA S + EA K IWEV T FP GST+C+ Q + * A + GK+S+ +CSD R+ FR ++*GL GCC +FHEV+ L Subject 4911 KHHRFEGGKFSLTFCW*TSLPFFNS*KWGECHTRPASR*A*LLQWFQCQHWEK*GS*RGEVVW*PMAESYAFPGSR*GL*S*RDGRGMLK*RMVQNPHSLKQFRVNQSQVGG*DGLKRVSGGALWL*GNSAIL**AQRWCW*ATE*CM*KI*KHLPKA*RK*FHNIPHGCSKASKIFKAPG*SSQTEAGKTIWEVLTGFFPV*GSTKCQSQFQYVQ*GSAGVRGKKSQ*ECSDYREPFRQVM*GLAVGCCSHFHEVAAL 5687
Range 6: 4278 to 4853 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 88/192(46%) | 0/192(0%) | Plus/Plus |
Query 19 RQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSH 594 RQIKEG +GC * P*+S+ +GW L + * S + W++RSM +C++ * FH +C *S+ +HI F+K G * E*H + R+ +*VQ + C+ +V* T+ LQKG +DC FC*L +F QYA* ++ GC SF+L* +EN PVLLW+EA H++ *+ WVE Q W +S+IT* LS+ Subject 4278 RQIKEGRVGCSDF*GFP*KSFWFEGWPLCNFR*GSVVSPWIYRSMFACHT**CFHFTCR*SMPEHIRFTKGSGNSGS*AE*HTQTT*RQDV*VQHRKQTFCEPNV*I*TTMSLQKGFNDCCFC*LCNFSQYA*LSPGKVERSLGCCSSFQL*GEENSPVLLWDEAAHSHIW*VNWVEFQKWGNSHIT*LLSY 4853
Range 7: 4703 to 5545 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
277.8 bits(600) | 0.0 | 145/281(52%) | 0/281(0%) | Minus/Minus |
Query 444 HCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPK 1286 +C H VEP GK V+TSHM L AS+ L+ ALKI D +P* NH+LY L CFQIFHMH S+A H C QR H+H + PS+ PTW WL + L GF*TI HLSI + QL + HL GKA* A HHT SPL H +QC*H*NH*RS AH EA + HSP F LLK+ + V QQN E+FPPSN *C + + G*+E K T ER+HVI*E H *+STQ H+ * * AS QSRTG FS QS KL HP+ Subject 4703 NCDWHLVEP*TGKNPVRTSHMVLPASVWLLQPGALKILDAFEQP*GMLWNHFLYALGKCFQIFHMHYSVAHQHHLCAHQRIAELPHSHSAPPDTLLRPSYPPTWLWLTLNCLRECGF*TILHLSIPLPSLQLHSPHLDPGKA*LSAMGHHTTSPL*LPHFSQC*H*NH*RS*AHLEAGLV*HSPHF*LLKNGKEVYQQNVRENFPPSNL*CLPNPNYG*SETKQ*ATVGRQYERSHVI*EFPHF*NSTQLTHQM*E*AASSQSRTGLFSSPQSWKLEQHPR 5545
Range 8: 4349 to 4678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 48/110(44%) | 0/110(0%) | Minus/Minus |
Query 90 NHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 419 +HAYC K NQQK+QS +PF* V+ QT Q CTY + L+ +CHS Q P+ F N MC DH+Q +*K H *Q +IDR Q E H++ N QP Subject 4349 SHAYCEKLHNQQKQQSLNPF*RDMVV*IQTLGSQNVCFLCCTYTSCLQVV*VCHSAQLPELPDPFVNRMCSGMDHRQVK*KHHYV*QANIDRYIQGETTEPHRKLHNGQP 4678
Range 9: 5636 to 5677 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 10/14(71%) | 0/14(0%) | Minus/Minus |
Query 1377 TS*KLGQHPATNPY 1418 TS*K QHP NPY Subject 5636 TS*K*EQHPTANPY 5677
Range 10: 4802 to 5569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 136/256(53%) | 0/256(0%) | Plus/Plus |
Query 543 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLC 1310 G* S M F YHM PF GG L L A I I *TS V*GWK F ILL N F*Q K GRM TCF VS TS MVSM ALG M+ ERRSCVV G*+LCFS KM KL+ NAQM+NGSKP * +QP PGG RW *++ + V M+ ++SL +T V SN* MHVKDLKA+ Q IK MI * SW +V NFQS + K N*G Q+HMGS Y LS RFH*M T+ ++ C Subject 4802 G*ISKMGEFSYHMTPFILTTDGGLLLCLASAIIWIW*TSQV*GWKVFSHILLVNLFTIF*QLKVGRMSYETCFQVSLTSSMVSMSALGKMRELERRSCVVTHG*KLCFSWVKMRTVKLKRWKRNAQMKNGSKPTFP*AI*SQPEPGGWVRWP*KSIGRCAVAMR*LSNSLMSTEVVLVSN*VMHVKDLKAFTQGIKEMIP*HSSWLFESV*NFQSPRLKQPN*GGQNHMGSSYWILSCLRFH*MPITIPICSMRQC 5569
Range 11: 4466 to 4759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 52/98(53%) | 0/98(0%) | Plus/Plus |
Query 207 KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT 500 +AH I K+I FW L+RVTY K IGTT +A L* +CL DY V+SKR *L LLLI F TICM S ++ WM *F AL++RK SSPT Subject 4466 RAHTIHKRIGQFWELSRVTYSNYLKARRIGTT*KADVL*TQCLNLDYHVSSKRVQ*LLLLLIMQFFTICMTFSWQGRKVPWMLF*FPALRRRK*SSPT 4759
Nucleotide Sequence (106 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
85.4 | 468.0 | 34% | 4.3e-16 | 91% | KX274275.1 | |
76.2 | 371.8 | 40% | 2.773e-13 | 71% | AY368590.1 | |
64.8 | 127.9 | 34% | 7.378e-10 | 71% | KR054735.1 | |
62.2 | 115.7 | 32% | 4.629e-09 | 65% | AY368172.2 | |
61.3 | 114.8 | 33% | 8.542e-09 | 69% | AY881627.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 3331 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 33/35(94%) | 0/35(0%) | Minus/Minus |
Query 2 IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQTV 106 IF+KLLPYGWARKS INW*FTFHERPYSCLQSQTV Subject 3331 IFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTV 3435
Range 2: 3332 to 3433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 33/34(97%) | 0/34(0%) | Plus/Plus |
Query 3 TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK 104 TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL K Subject 3332 TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVK 3433
Range 3: 3330 to 3434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(165) | 0.0 | 33/35(94%) | 0/35(0%) | Minus/Minus |
Query 1 FSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 105 FSPSCFRMVG ERA STGDSLSTNDLIPAFKAKPS Subject 3330 FSPSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPS 3434
Range 4: 3332 to 3433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 31/34(91%) | 0/34(0%) | Minus/Minus |
Query 3 FLQVASVWLGSKELNQLVIHFPRTTLFLPSKPNR 104 F QVASVWLG KEL+QLVIHFPRTTLFLPSKPNR Subject 3332 FHQVASVWLGPKELDQLVIHFPRTTLFLPSKPNR 3433
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 3330 to 3434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(161) | 0.0 | 31/35(89%) | 0/35(0%) | Minus/Minus |
Query 1 FSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 105 FSPSCFR+VG ERA STGDSLSTNDLIPAFKA+PS Subject 3330 FSPSCFRIVGFERAGSTGDSLSTNDLIPAFKARPS 3434
Range 2: 3331 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.1 bits(161) | 0.0 | 33/35(94%) | 0/35(0%) | Plus/Plus |
Query 2 DGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN 106 DGLALKAGIRSFVESESPVD ALS+PTIRKQLGEN Subject 3331 DGLALKAGIRSFVESESPVDPALSNPTIRKQLGEN 3435
Range 3: 3331 to 3435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 25/35(71%) | 0/35(0%) | Minus/Minus |
Query 2 IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQTV 106 IF+KLLPY W KS IN *FTFH+RPYS LQS T+ Subject 3331 IFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS*TI 3435
Range 4: 3341 to 3433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 24/31(77%) | 0/31(0%) | Plus/Plus |
Query 12 L*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK 104 L*R+E*GR WKVNH+LIQLF+ Q YGSNL K Subject 3341 L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVK 3433
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 2
Rupestris stem pitting associated virus isolate RSPaV PN, complete genome
Sequence ID: AY368172.2 Length: 8743 Number of Matches: 2
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 2
Nucleotide Sequence (147 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
123.4 | 693.7 | 33% | 1.682e-27 | 96% | GQ478315.1 | |
123.4 | 705.6 | 33% | 1.682e-27 | 98% | AY927675.1 | |
123.4 | 705.6 | 33% | 1.682e-27 | 98% | DQ364986.1 | |
123.4 | 705.6 | 33% | 1.682e-27 | 98% | FJ943289.1 | |
123.4 | 705.6 | 33% | 1.682e-27 | 98% | FJ943304.1 |
Alignments
Rupestris stem pitting associated virus isolate H2 coat protein gene, complete cds
Sequence ID: GQ478315.1 Length: 905 Number of Matches: 6
Range 1: 426 to 569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Minus |
Query 3 SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ 146 SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ Subject 426 SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ 569
Range 2: 425 to 568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 2 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 145 LDWKESLL*PE*V*NCWNNK SDYPAQILHVLCKNRVEYPSGDGDSTR Subject 425 LDWKESLL*PE*V*NCWNNKESDYPAQILHVLCKNRVEYPSGDGDSTR 568
Range 3: 426 to 569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 46/48(96%) | 0/48(0%) | Plus/Plus |
Query 3 LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA 146 LIGKSPFCDLNRSEIAGIIR+VTTL RFCMYYAKIVWNIHLETGIPPA Subject 426 LIGKSPFCDLNRSEIAGIIRKVTTLRRFCMYYAKIVWNIHLETGIPPA 569
Range 4: 424 to 570 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 48/49(98%) | 0/49(0%) | Minus/Minus |
Query 1 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 147 *RVESPSPDGYSTRFLHSTCKICAG*SL LLFQQFQTYSGHRRDSFQSR Subject 424 *RVESPSPDGYSTRFLHSTCKICAG*SLSLLFQQFQTYSGHRRDSFQSR 570
Rupestris stem pitting associated virus isolate M37 12 coat protein gene, complete cds
Sequence ID: AY927675.1 Length: 780 Number of Matches: 6
Range 1: 364 to 507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Minus |
Query 3 SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ 146 SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ Subject 364 SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ 507
Range 2: 363 to 506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 48/48(100%) | 0/48(0%) | Plus/Plus |
Query 2 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 145 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR Subject 363 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 506
Range 3: 362 to 508 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 49/49(100%) | 0/49(0%) | Minus/Minus |
Query 1 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 147 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR Subject 362 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 508
Range 4: 364 to 507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 3 LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA 146 LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA Subject 364 LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 507
Rupestris stem pitting associated virus isolate TRCV1 28 kDa coat protein gene, complete cds
Sequence ID: DQ364986.1 Length: 867 Number of Matches: 6
Range 1: 407 to 550 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Minus |
Query 3 SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ 146 SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ Subject 407 SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ 550
Range 2: 406 to 549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 48/48(100%) | 0/48(0%) | Plus/Plus |
Query 2 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 145 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR Subject 406 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 549
Range 3: 405 to 551 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 49/49(100%) | 0/49(0%) | Minus/Minus |
Query 1 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 147 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR Subject 405 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 551
Range 4: 407 to 550 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 3 LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA 146 LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA Subject 407 LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 550
Grapevine rupestris stem pitting associated virus isolate EWCH6 collection date Nov 2005 coat protein gene, complete cds
Sequence ID: FJ943289.1 Length: 780 Number of Matches: 6
Range 1: 364 to 507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Minus |
Query 3 SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ 146 SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ Subject 364 SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ 507
Range 2: 363 to 506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 48/48(100%) | 0/48(0%) | Plus/Plus |
Query 2 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 145 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR Subject 363 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 506
Range 3: 362 to 508 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 49/49(100%) | 0/49(0%) | Minus/Minus |
Query 1 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 147 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR Subject 362 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 508
Range 4: 364 to 507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 3 LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA 146 LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA Subject 364 LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 507
Grapevine rupestris stem pitting associated virus isolate ORPN4 collection date Nov 2007 coat protein gene, complete cds
Sequence ID: FJ943304.1 Length: 780 Number of Matches: 6
Range 1: 364 to 507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Minus |
Query 3 SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ 146 SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ Subject 364 SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ 507
Range 2: 363 to 506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 48/48(100%) | 0/48(0%) | Plus/Plus |
Query 2 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 145 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR Subject 363 LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR 506
Range 3: 362 to 508 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 49/49(100%) | 0/49(0%) | Minus/Minus |
Query 1 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 147 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR Subject 362 *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR 508
Range 4: 364 to 507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 3 LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA 146 LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA Subject 364 LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 507
Nucleotide Sequence (229 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
184.4 | 1048.4 | 34% | 2.066e-45 | 96% | AB277783.1 | |
183.0 | 1040.1 | 34% | 5.358e-45 | 93% | KX274275.1 | |
171.1 | 960.9 | 34% | 2.067e-41 | 87% | AY368590.1 | |
146.8 | 708.8 | 41% | 4.056e-34 | 68% | AF026278.1 | |
145.4 | 690.1 | 40% | 1.052e-33 | 66% | KT000371.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 1385 to 1612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.4 bits(396) | 0.0 | 73/76(96%) | 0/76(0%) | Plus/Plus |
Query 1 ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 228 ATFDVVTLLKSRDPT DDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWL A+FPKKVKFAILR Subject 1385 ATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLSASFPKKVKFAILR 1612
Range 2: 1386 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.1 bits(391) | 0.0 | 76/76(100%) | 0/76(0%) | Plus/Plus |
Query 2 LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 229 LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG Subject 1386 LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 1613
Range 3: 1385 to 1612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 75/76(99%) | 0/76(0%) | Minus/Minus |
Query 1 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS 228 PEYGKFDFLRK STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS Subject 1385 PEYGKFDFLRK*STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS 1612
Range 4: 1387 to 1611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.7 bits(364) | 0.0 | 72/75(96%) | 0/75(0%) | Plus/Plus |
Query 3 YI*CCYLIEIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ 227 YI*CCYLIEIKGSD R**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALA C IS*ESQICHTQ Subject 1387 YI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALA*CFIS*ESQICHTQ 1611
Range 5: 1387 to 1611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 72/75(96%) | 0/75(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV 227 LSMANLTFLGN A SQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV Subject 1387 LSMANLTFLGNEALSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNV 1611
Range 6: 1386 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 73/76(96%) | 0/76(0%) | Minus/Minus |
Query 2 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM* 229 P*VWQI*LS*EM+H ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM* Subject 1386 P*VWQI*LS*EMKH*ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM* 1613
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 7129 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 75/76(99%) | 0/76(0%) | Minus/Minus |
Query 1 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS 228 PEYGKFDFLRKCSTKPMP PIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS Subject 7129 PEYGKFDFLRKCSTKPMPTPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS 7356
Range 2: 7130 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Plus |
Query 2 LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 229 LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIG+GIGLVLHFLRKSNLPYSG Subject 7130 LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGVGIGLVLHFLRKSNLPYSG 7357
Range 3: 7129 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 71/76(93%) | 0/76(0%) | Plus/Plus |
Query 1 ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 228 ATFDVVTLLKSRDPT DDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHP+DDW GHWLGAAF KKVKFAI R Subject 7129 ATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPVDDWRGHWLGAAFSKKVKFAIFR 7356
Range 4: 7131 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.4 bits(370) | 0.0 | 71/75(95%) | 0/75(0%) | Plus/Plus |
Query 3 YI*CCYLIEIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ 227 YI*CCYLIEIKGSD R**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSP *RLAWALAWCCI *ESQICH Q Subject 7131 YI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPR*RLAWALAWCCIF*ESQICHIQ 7355
Range 5: 7131 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 70/75(93%) | 0/75(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV 227 L+MANLTFL NAAPSQCP QSS G**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV Subject 7131 LNMANLTFLENAAPSQCPRQSSTG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNV 7355
Range 6: 7130 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Minus |
Query 2 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM* 229 P*+WQI*LS*+MQHQANA ANRQ GDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM* Subject 7130 P*IWQI*LS*KMQHQANAHANRQRGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM* 7357
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 7129 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Minus |
Query 1 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS 228 PEYGKFDFLRKCSTKPMPKPIVNGV VLAQFAGC*KGISLHDDQ L MSCCSNVEPVLII GRI *FQ*GNNIKCS Subject 7129 PEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCS 7356
Range 2: 7130 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 71/76(93%) | 0/76(0%) | Plus/Plus |
Query 2 LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 229 LHLMLLPY*NQ IRP MISTGSTLLQQDI R+*SSCSEMPFQQPANWAKT+TPLTIGLGIGLVLHFLRKSNLPYSG Subject 7130 LHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSG 7357
Range 3: 7132 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 68/75(91%) | 0/75(0%) | Plus/Plus |
Query 4 TFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 228 TFDVVTLLKSRDPT DDKHWFYIAATRHRKKLIIMQ*+AFSATCELGQN + IDD LGHWLGAAFPKKVKFA+LR Subject 7132 TFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*DAFSATCELGQNCYSIDDRLGHWLGAAFPKKVKFAVLR 7356
Range 4: 7131 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 69/75(92%) | 0/75(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV 227 LS ANLTFLGNAAPSQCPS SSM * FWPNSQVAEKA HCMMINFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV Subject 7131 LSTANLTFLGNAAPSQCPSLSSME*QFWPNSQVAEKASHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNV 7355
Range 5: 7131 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 65/75(87%) | 0/75(0%) | Plus/Plus |
Query 3 YI*CCYLIEIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ 227 YI*CCYLIEIK SD **ALVLHCCNKT*+E+DHHAV+CLFSNLRIGPKL H*R AWALAWCCIS*ESQIC TQ Subject 7131 YI*CCYLIEIKRSDL***ALVLHCCNKT*EEVDHHAVRCLFSNLRIGPKLLLH*R*AWALAWCCIS*ESQICRTQ 7355
Range 6: 7130 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 66/76(87%) | 0/76(0%) | Minus/Minus |
Query 2 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM* 229 P*V QI*LS*EMQHQANAQA RQW +SFGPIRRLLKRH TA**S S YVLLQQCRTSAYH+ SD LISIR*QHQM* Subject 7130 P*VRQI*LS*EMQHQANAQAYRQWSNSFGPIRRLLKRHLTA**STSSYVLLQQCRTSAYHQRSDLLISIR*QHQM* 7357
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 6
Range 1: 7129 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 56/76(74%) | 0/76(0%) | Plus/Plus |
Query 1 ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 228 +TF+VVTLLKSRDPTP+D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID WLGHW AAFP++VK + R Subject 7129 STFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFPEEVKSTLFR 7356
Range 2: 7151 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 56/69(81%) | 0/69(0%) | Plus/Plus |
Query 23 Y*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 229 +*NQ I+P I TG TLL QD RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG Subject 7151 F*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG 7357
Range 3: 7135 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 52/74(70%) | 0/74(0%) | Minus/Minus |
Query 7 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK 228 PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ ++K Subject 7135 PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVK 7356
Range 4: 7131 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 53/75(71%) | 0/75(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV 227 L+ +LT GNAA +QCPSQ SM F PNSQ AEKA +CM+INF LCLVAAM*NQCLSSGVGSLDF +VTT V Subject 7131 LNKVDLTSSGNAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKV 7355
Range 5: 7155 to 7343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 46/63(73%) | 0/63(0%) | Plus/Plus |
Query 27 EIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQI 215 EIK S+PR *ALVLHCC KT EID+HAV+CLFS+LRIG K H*+LAWAL CCIS* SQI Subject 7155 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIS*GSQI 7343
Range 6: 7154 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/68(68%) | 0/68(0%) | Minus/Minus |
Query 26 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS 229 P*+ I*L EMQH+ NAQAN QW F PIRRLLKRH TA* SIS VL QQC+TSAY G D LIS Subject 7154 P*IR*I*LPQEMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7357
UNVERIFIED: Grapevine rupestris stem pitting associated virus isolate 22_2_3 genomic sequence
Sequence ID: KT000371.1 Length: 7486 Number of Matches: 6
Range 1: 6089 to 6313 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 56/75(75%) | 0/75(0%) | Plus/Plus |
Query 4 TFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 228 TF+VVTLLKSRDPTP+D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID WLGHW AAF +KVK + R Subject 6089 TFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWXXAAFSEKVKSTLFR 6313
Range 2: 6108 to 6314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 54/69(78%) | 0/69(0%) | Plus/Plus |
Query 23 Y*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 229 +*NQ I+P I TG TLL QD RN* SCS+MPFQQPANWAKTITPLT+GLGIG LHFLRKSNLPYSG Subject 6108 F*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGXXLHFLRKSNLPYSG 6314
Range 3: 6092 to 6313 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 51/74(69%) | 0/74(0%) | Minus/Minus |
Query 7 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK 228 PE G+FDFLRKCS PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ ++K Subject 6092 PE*GRFDFLRKCSXXPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVK 6313
Range 4: 6088 to 6312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 53/75(71%) | 0/75(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV 227 L+ +LTF NAA QCPSQ SM F PNSQ AEKA +CM+INF LCLVAAM*NQCLSSGVGSLDF +VTT V Subject 6088 LNKVDLTFSENAAXXQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKV 6312
Range 5: 6112 to 6300 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 45/63(71%) | 0/63(0%) | Plus/Plus |
Query 27 EIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQI 215 EIK S+PR *ALVLHCC KT EID+HAV+CLFS+LRIG K H*+LAWAL CI *ESQI Subject 6112 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALXXXCIF*ESQI 6300
Range 6: 6111 to 6314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 45/68(66%) | 0/68(0%) | Minus/Minus |
Query 26 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS 229 P*+ I*LS +MQ NAQAN QW F PIRRLLKRH TA* SIS VL QQC+TSAY G D LIS Subject 6111 P*IR*I*LSQKMQXXXNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 6314
Nucleotide Sequence (178 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
143.6 | 754.3 | 24% | 1.567e-33 | 93% | AB277783.1 | |
143.6 | 745.6 | 24% | 1.567e-33 | 91% | KX274275.1 | |
141.7 | 368.5 | 37% | 5.582e-33 | 47% | AB277787.1 | |
141.7 | 414.9 | 37% | 5.582e-33 | 47% | KX274277.1 | |
141.3 | 451.0 | 34% | 7.669e-33 | 51% | KR054735.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8
Range 1: 1286 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 58/59(98%) | 0/59(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 177 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA Subject 1286 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA 1462
Range 2: 1287 to 1460 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 54/58(93%) | 0/58(0%) | Plus/Minus |
Query 3 QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 176 QQCRTSAYHR SDPLISIR*QHQM*HLVPHKEV*NRNYA+ LNQLPPCQSK AHPQHP Subject 1287 QQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHP 1460
Range 3: 1285 to 1461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.1 bits(278) | 0.0 | 58/59(98%) | 0/59(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 178 AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN Subject 1285 AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 1461
Range 4: 1286 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 56/59(95%) | 0/59(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 177 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMR *INCLLAKAN HTLNIQ Subject 1286 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKANQHTLNIQ 1462
Range 5: 1359 to 1460 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Plus |
Query 3 SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL 104 SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL Subject 1359 SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL 1460
Range 6: 1285 to 1326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 13/14(93%) | 0/14(0%) | Minus/Plus |
Query 137 VGC*GCANLLWQGG 178 VGC*GCA+LLWQGG Subject 1285 VGC*GCADLLWQGG 1326
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8
Range 1: 7030 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 58/59(98%) | 0/59(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 177 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA Subject 7030 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA 7206
Range 2: 7031 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 53/58(91%) | 0/58(0%) | Plus/Minus |
Query 3 QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 176 QQCRTSAYHR SDPLISIR*QHQM*HL PHKEV*N+NYA+ LNQLPPCQSKLAHPQHP Subject 7031 QQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHP 7204
Range 3: 7029 to 7205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.1 bits(278) | 0.0 | 58/59(98%) | 0/59(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 178 AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN Subject 7029 AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 7205
Range 4: 7030 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 55/59(93%) | 0/59(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 177 CSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRKFEI IMR *INCLLAKAN*HTLNIQ Subject 7030 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQ 7206
Range 5: 7103 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/34(97%) | 0/34(0%) | Minus/Plus |
Query 3 SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL 104 SNFLVR EVLHLMLLPY*NQGIRPPMISTGSTLL Subject 7103 SNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLL 7204
Range 6: 7029 to 7070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 14/14(100%) | 0/14(0%) | Minus/Plus |
Query 137 VGC*GCANLLWQGG 178 VGC*GCANLLWQGG Subject 7029 VGC*GCANLLWQGG 7070
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 4
Range 1: 1286 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 55/59(93%) | 0/59(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 177 LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA Subject 1286 LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA 1462
Range 2: 1285 to 1461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(243) | 0.0 | 49/59(83%) | 0/59(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 178 AA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+ Subject 1285 AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS 1461
Range 3: 1286 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 29/59(49%) | 0/59(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 177 C +VEP+LI +P Q* N+KC T +L + E+GI+R C*+ LL+KAN +LNIQ Subject 1286 CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*VYGLLSKANEDSLNIQ 1462
Range 4: 1287 to 1451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 26/55(47%) | 0/55(0%) | Plus/Minus |
Query 12 RTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 176 RT+AY P SI Q QM + P + *+RN A+LL PP QSK PQHP Subject 1287 RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLGLRPPFQSK*GLPQHP 1451
Grapevine rupestris stem pitting associated virus isolate SK30, complete genome
Sequence ID: KX274277.1 Length: 8724 Number of Matches: 5
Range 1: 7030 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 55/59(93%) | 0/59(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 177 LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA Subject 7030 LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA 7206
Range 2: 7029 to 7205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(243) | 0.0 | 49/59(83%) | 0/59(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 178 AA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+ Subject 7029 AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS 7205
Range 3: 7030 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 30/59(51%) | 0/59(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 177 C +VEP+LI +P Q* N+KC T +L + E+GI+R C*I LL+KAN ++LNIQ Subject 7030 CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQ 7206
Range 4: 7031 to 7195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 26/55(47%) | 0/55(0%) | Plus/Minus |
Query 12 RTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 176 RT+AY P SI Q QM + P + *+RN A+LL+ PP QSK PQHP Subject 7031 RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHP 7195
Range 5: 7032 to 7196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 29/55(53%) | 0/55(0%) | Minus/Plus |
Query 11 GC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRCYI*CCYLIEIKGSDPR**ALVL 175 GC*G ++LLW+GG SS A FR Q +L G I* C +IE+ G + R *ALVL Subject 7032 GC*GSSHLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVL 7196
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 5
Range 1: 7030 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 55/59(93%) | 0/59(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 177 LDVEGVLICFGKEAVDLA +HNSDFKLPCEVRG+TFDVVTLLKSRDPTPDD+HWFYIAA Subject 7030 LDVEGVLICFGKEAVDLAVSHNSDFKLPCEVRGSTFDVVTLLKSRDPTPDDRHWFYIAA 7206
Range 2: 7029 to 7205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.1 bits(258) | 0.0 | 53/59(90%) | 0/59(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 178 AAM*NQCLSSGVGSLDFNKVTTSNV P TSQGSLKSELC A+STAS PKQISTPSTSN Subject 7029 AAM*NQCLSSGVGSLDFNKVTTSNVEPLTSQGSLKSELCETARSTASFPKQISTPSTSN 7205
Range 3: 7033 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 30/58(52%) | 0/58(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNI 174 CS+VEP+ ++GG +P* Q +N+KC T + R+FEI I+R I+CL +KA+*HTL+I Subject 7033 CSDVEPMPVVGGWVP*LQQSDNVKC*TPHFARQFEIRIVRNRQIHCLFSKAD*HTLDI 7206
Range 4: 7034 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 29/57(51%) | 0/57(0%) | Plus/Minus |
Query 3 QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQH 173 Q+CRT+A RG PL S +*Q QM + K V*N+N A+ + LP QS+LAHP+H Subject 7034 QRCRTNACRRGLGPLTSTK*QRQMLNPSLRKAV*NQNCAKPPDPLPLFQSRLAHPRH 7204
Range 5: 7029 to 7205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 31/59(53%) | 0/59(0%) | Minus/Plus |
Query 2 VGC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRCYI*CCYLIEIKGSDPR**ALVLHCC 178 V C GCANLLW+ GS A F FQT+L I* C+ +E+KG +PR ALVLH C Subject 7029 VRCRGCANLLWKRGSGSGGFAQF*FQTALRSEGFNI*RCHFVEVKGPNPRRQALVLHRC 7205
Nucleotide Sequence (106 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
84.0 | 466.0 | 34% | 1.115e-15 | 91% | AB277783.1 | |
84.0 | 466.0 | 34% | 1.115e-15 | 91% | KX274275.1 | |
82.2 | 147.4 | 42% | 3.972e-15 | 89% | JX559646.1 | |
82.2 | 147.4 | 42% | 3.972e-15 | 89% | KC427107.1 | |
82.2 | 410.5 | 36% | 3.979e-15 | 82% | AY368590.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 1382 to 1486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 33/35(94%) | 0/35(0%) | Plus/Plus |
Query 1 GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI 105 GA+FDVVTLLKSRDPT DDKHWFYIAATRHRKKLI Subject 1382 GATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLI 1486
Range 2: 1383 to 1487 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 35/35(100%) | 0/35(0%) | Plus/Plus |
Query 2 VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S 106 VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S Subject 1383 VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S 1487
Range 3: 1382 to 1486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 34/35(97%) | 0/35(0%) | Minus/Minus |
Query 1 DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK*ST 105 DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK ST Subject 1382 DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCST 1486
Range 4: 1384 to 1485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 31/34(91%) | 0/34(0%) | Plus/Plus |
Query 3 CFI*CCYLIEIKGSDPR**ALVLHCCNKT*KETD 104 C+I*CCYLIEIKGSD R**ALVLHCCNKT*KE D Subject 1384 CYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEID 1485
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 7126 to 7230 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 33/35(94%) | 0/35(0%) | Plus/Plus |
Query 1 GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI 105 GA+FDVVTLLKSRDPT DDKHWFYIAATRHRKKLI Subject 7126 GATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLI 7230
Range 2: 7127 to 7231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 35/35(100%) | 0/35(0%) | Plus/Plus |
Query 2 VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S 106 VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S Subject 7127 VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S 7231
Range 3: 7126 to 7230 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 34/35(97%) | 0/35(0%) | Minus/Minus |
Query 1 DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK*ST 105 DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK ST Subject 7126 DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCST 7230
Range 4: 7127 to 7231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 32/35(91%) | 0/35(0%) | Minus/Minus |
Query 2 *SVSFYVLLQQCRTSAYHRGSDPLISIR*QHQMKH 106 *S+SFYVLLQQCRTSAYHR SDPLISIR*QHQM H Subject 7127 *SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*H 7231
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 2
Grapevine rupestris stem pitting associated virus isolate GRSPaV WA, complete genome
Sequence ID: KC427107.1 Length: 8742 Number of Matches: 2
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 7126 to 7230 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 32/35(91%) | 0/35(0%) | Plus/Plus |
Query 1 GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI 105 G +FDVVTLLKSRDPT DDKHWFYIAATRHRKKLI Subject 7126 GTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLI 7230
Range 2: 7134 to 7229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 30/32(94%) | 0/32(0%) | Minus/Minus |
Query 9 ISFFLCLVAAM*NQCLSSGVGSLDFNKVTTSN 104 I+FFLCLVAAM*NQCLSS VGSLDFNKVTTSN Subject 7134 INFFLCLVAAM*NQCLSSEVGSLDFNKVTTSN 7229
Range 3: 7126 to 7230 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 30/35(86%) | 0/35(0%) | Minus/Minus |
Query 1 DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK*ST 105 DQ L MSCCSNVEPVLII GRI *FQ*GNNIK ST Subject 7126 DQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCST 7230
Range 4: 7127 to 7231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 31/35(89%) | 0/35(0%) | Plus/Plus |
Query 2 VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S 106 VLHLMLLPY*NQ IRP MISTGSTLLQQDI R+*S Subject 7127 VLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*S 7231
Nucleotide Sequence (783 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
602.2 | 3412.1 | 31% | 2.652e-170 | 95% | KX274275.1 | |
587.6 | 3072.7 | 31% | 6.878e-166 | 85% | AY368590.1 | |
538.1 | 1770.0 | 25% | 5.451e-151 | 45% | KR054735.1 | |
535.8 | 1780.7 | 32% | 2.655e-150 | 43% | KX925556.1 | |
534.0 | 1778.0 | 32% | 9.457e-150 | 42% | AF026278.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8
Range 1: 2555 to 3334 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
602.2 bits(1308) | 0.0 | 252/260(97%) | 0/260(0%) | Minus/Minus |
Query 3 RRC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PELVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ 782 RRC*EESQLSAKSS+HHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSM ICELLAC I*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*P LVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KF HLLIFGVGMSKTLSHSGNWKHHGK+CSAYPEASQRTRQVQLSGCNGFLQ Subject 2555 RRC*EESQLSAKSSYHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSM*ICELLACQLI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PGLVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFGRHLLIFGVGMSKTLSHSGNWKHHGKNCSAYPEASQRTRQVQLSGCNGFLQ 3334
Range 2: 2554 to 3333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
596.7 bits(1296) | 0.0 | 258/260(99%) | 0/260(0%) | Plus/Plus |
Query 2 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD 781 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLGKCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKS CSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDG+CFWHSVGFLLSTD Subject 2554 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLGKCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSTCSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTD 3333
Range 3: 2553 to 3335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
577.5 bits(1254) | 0.0 | 257/261(98%) | 0/261(0%) | Minus/Minus |
Query 1 PSVLRRKPTECQKQSPSPGTGKVLXXXXXXXXXXXIGQPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST 783 PSVLRRKPTECQKQ PSPGTGKVLKSSISKSADASIGQPNNNSLDPENEH DL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGL+KI SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST Subject 2553 PSVLRRKPTECQKQLPSPGTGKVLKSSISKSADASIGQPNNNSLDPENEHVDL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLMKIWSSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST 3335
Range 4: 2932 to 3333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
306.7 bits(663) | 0.0 | 131/134(98%) | 0/134(0%) | Minus/Minus |
Query 380 VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPI 781 VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LA SDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQ+L*QAGPSSGEYDPI Subject 2932 VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LAS*SDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQDL*QAGPSSGEYDPI 3333
Range 5: 2554 to 2895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 109/114(96%) | 0/114(0%) | Minus/Minus |
Query 2 EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN 343 EIVYQILELVKVMTRKARTKV*C+ACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGAN+NL++IF*FLASECQRHSPTQAIGNTMEK+ALHTPRHLKELARFNCQAAMVSFN Subject 2554 EIVYQILELVKVMTRKARTKV*CEACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANENLVVIF*FLASECQRHSPTQAIGNTMEKIALHTPRHLKELARFNCQAAMVSFN 2895
Range 6: 2900 to 3334 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.9 bits(718) | 0.0 | 142/145(98%) | 0/145(0%) | Plus/Plus |
Query 348 *L*VPKVWVSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT 782 *L*VPKVWVSVIGSYSPLLGPACHK WLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSD AS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT Subject 2900 *L*VPKVWVSVIGSYSPLLGPACHKSWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDQLAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT 3334
Range 7: 2555 to 2857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 96/101(95%) | 0/101(0%) | Plus/Plus |
Query 3 LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFLV 305 LKETIAA*QLNLASSLRCLGVCRA FSMVFPIA*VGECL*HSDAKN*KM KF LAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQA HQTFVLAFLV Subject 2555 LKETIAA*QLNLASSLRCLGVCRAIFSMVFPIA*VGECL*HSDAKN*KMTTKFSLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQASHQTFVLAFLV 2857
Range 8: 2553 to 3278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
517.5 bits(1123) | 0.0 | 233/242(96%) | 0/242(0%) | Plus/Plus |
Query 1 S*RKPLQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC 726 S*RKPLQPDN*TWRVL*DASGYAEQ FPWCFQLPEWESVFDIPTPKIRR* NF+*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKL+IRPLFLLFLS*LSQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTS GYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQI+ QAKSSQI MLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC Subject 2553 S*RKPLQPDN*TWRVL*DASGYAEQFFPWCFQLPEWESVFDIPTPKIRR*RPNFH*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLHIRPLFLLFLS*LSQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSPGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQINWQAKSSQIYMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC 3278
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9
Range 1: 2554 to 3333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
587.6 bits(1276) | 0.0 | 253/260(97%) | 0/260(0%) | Plus/Plus |
Query 2 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD 781 VEGNHCSLTIEP EFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIF+SPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLG+CDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDF+IKKIED SIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGC IEASADFEIEDFNTFPVPGDG+CFWHSVGFLLSTD Subject 2554 VEGNHCSLTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFVSPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLGQCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFNIKKIEDSSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTD 3333
Range 2: 2553 to 3224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
490.0 bits(1063) | 0.0 | 209/224(93%) | 0/224(0%) | Minus/Minus |
Query 1 QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST 672 QPNNNSLDPENEHADL*TLSLPVDLTGAL*DIT ME SSIFL+LKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLG+ARTCDRPVPVVANTTLSH P PWAPRA+LRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHM RSSFS*FCS+GT GL KI SSSS+FWRRNVKDTLPL+QLETPWKKLLCIPRGISKNS GSIVRLQWFPST Subject 2553 QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITNMELSSIFLMLKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGMARTCDRPVPVVANTTLSHWPNPWAPRASLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMFRSSFS*FCSIGT*GLTKIWSSSSSFWRRNVKDTLPLKQLETPWKKLLCIPRGISKNSLGSIVRLQWFPST 3224
Range 3: 3264 to 3335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 23/24(96%) | 0/24(0%) | Minus/Minus |
Query 712 PSVLRRKPTECQKQSPSPGTGKVL 783 PSVLRRKPTECQKQ PSPGTGKVL Subject 3264 PSVLRRKPTECQKQLPSPGTGKVL 3335
Range 4: 2555 to 3328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
508.8 bits(1104) | 0.0 | 220/258(85%) | 0/258(0%) | Minus/Minus |
Query 3 C*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PELVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ 776 C*EE+QLSAKSS+HHQAQEKC*SLQF++QLMPQ SPITTP T+KMSMQICELLACLWI*LEPCKI Q W++LLSF* *NPL*KLQMIPRFLDRSQFLKKGPLQ QG TVSCFLA PELVTGRSQ WR RPYHT P LGHLEL *DCLSDP* CESYDKKSKNKGLM*SLCH*LKWIS*SHG P ATC DQASHDFAQ AL G* KF HL +FGVGMSK LSHS NWK HGKSCSAY EASQRTR VQLSGC+GFLQ Subject 2555 C*EENQLSAKSSYHHQAQEKC*SLQFQSQLMPQFDSPITTPLTQKMSMQICELLACLWI*LEPCKISQIWSYLLSF*C*NPL*KLQMIPRFLDRSQFLKKGPLQEQGLTVSCFLAWPELVTGRSQWWRTRPYHTGPILGHLELA*DCLSDP*ICESYDKKSKNKGLM*SLCH*LKWIS*SHGDPSATCFDQASHDFAQLALEG*QKFGRHLPVFGVGMSKILSHSNNWKRHGKSCSAYLEASQRTR*VQLSGCSGFLQ 3328
Range 5: 2932 to 3327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.4 bits(586) | 0.0 | 115/132(87%) | 0/132(0%) | Minus/Minus |
Query 380 AEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPI 775 A+KK N*VPKAVTITRHRKSVEVFNF++S*CLN AQ*QLP P K*ACRFVNS*LACGSDWSPVRY+K G IFYLFN EIPFKNFK*SQDFWTVVSF*RKGPFK+KD LFLASWH QNL*QAGPS GE+DPI Subject 2932 AKKKTN*VPKAVTITRHRKSVEVFNFKVS*CLNLTAQ*QLP*PRK*ACRFVNS*LACGSDWSPVRYHKYGAIFYLFNVEIPFKNFK*SQDFWTVVSF*RKGPFKNKD*LFLASWHGQNL*QAGPSGGEHDPI 3327
Range 6: 2554 to 2895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.1 bits(509) | 0.0 | 100/114(88%) | 0/114(0%) | Minus/Minus |
Query 2 EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN 343 EIVYQILE VKVMTRKARTKV*CKACAI+*NGFLDPME HLPHV+IKLLMILLN HL ANKNL++IF FLASECQR+SPTQ IGN MEKVALHT RHLKELARFNCQAA+VSFN Subject 2554 EIVYQILEFVKVMTRKARTKV*CKACAID*NGFLDPMETHLPHVSIKLLMILLNWHLRANKNLVVIFQFLASECQRYSPTQTIGNAMEKVALHTSRHLKELARFNCQAAVVSFN 2895
Range 7: 2900 to 3328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.3 bits(625) | 0.0 | 124/143(87%) | 0/143(0%) | Plus/Plus |
Query 348 *L*VPKVWVSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA 776 *L*VPK W SVIGS SP LGPACHKFW CQEARNS+SL LKGPFL*KLTTVQKSWDHLKFLKGIS LKR*K+ P L*YLTGLQSDPQAS*EFTNLHAHF G+GSCYWA +LRHQL KLKTSTLFLCLVMVTAFGTQL FF A Subject 2900 *L*VPKDWASVIGSCSPPLGPACHKFWPCQEARNSQSLFLKGPFL*KLTTVQKSWDHLKFLKGISTLKR*KIAPYL*YLTGLQSDPQAS*EFTNLHAHFLGQGSCYWAVKLRHQLTLKLKTSTLFLCLVMVTAFGTQLVFFLA 3328
Range 8: 2555 to 2857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 87/101(86%) | 0/101(0%) | Plus/Plus |
Query 3 LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFLV 305 LKET AA*QLNLASSLRCL VCRATFSM FPI *VGE L*HSDAKN KM KFLLA KC LSKIMRSLI TCG+W SMGSRNPFQ MAQALHQTFVLAFLV Subject 2555 LKETTAA*QLNLASSLRCLEVCRATFSMAFPIV*VGEYL*HSDAKNWKMTTKFLLALKCQLSKIMRSLIETCGRWVSMGSRNPFQSMAQALHQTFVLAFLV 2857
Range 9: 2553 to 3278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
438.2 bits(950) | 0.0 | 206/242(85%) | 0/242(0%) | Plus/Plus |
Query 1 S*RKPLQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC 726 S*RKPLQPDN*T RVL*DAS YAEQLFPW FQL EWES+FDIPTPK R* NF *P SA+*AKS*EA*S+HVA+G PWDQEIHFN WHKLYIRPLFLLFLS*LSQ+QGSDKQSQ SSRCPR G V**GR+RH+WDRPVTSSG+AKKQETV+PC *RGPFFRN*LRSKNLGII*SF*RGFQ+*KDRR H+C+ILQGSSQIHRQAKSSQICMLIF V+GVVIGL +*GIS* N*RLQHFSC Subject 2553 S*RKPLQPDN*T*RVL*DASRYAEQLFPWRFQLFEWESIFDIPTPKTGR*RPNFC*PSSAN*AKS*EA*SKHVADGSPWDQEIHFNQWHKLYIRPLFLLFLS*LSQIQGSDKQSQASSRCPRIGPV**GRVRHHWDRPVTSSGHAKKQETVNPCS*RGPFFRN*LRSKNLGII*SF*RGFQH*KDRR*LHICDILQGSSQIHRQAKSSQICMLIFWVKGVVIGLSN*GIS*L*N*RLQHFSC 3278
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 12
Range 1: 2554 to 3333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
538.1 bits(1168) | 0.0 | 227/260(87%) | 0/260(0%) | Plus/Plus |
Query 2 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD 781 VEGNHC+L IEPGEFFEMPRGMQS+ FHGVSNC +GRVSLTFRRQK+ D+DQ+FISPQVPIE NHEKLDR+MWQMGLHG+KKSISINGTSFTSDLCSCFSCHNFHKFKDL++NLKLALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSIL LEGALSLETDYGPK+LGSFEVFKGDFSIKKIE+GSIFVISYRA +RS+GKLRVHKS CSFSGSRE+LLGC IEASAD++I+DFNTF VPGDG+CFWHSVGFLLSTD Subject 2554 VEGNHCNLLIEPGEFFEMPRGMQSSHFHGVSNCSNGRVSLTFRRQKVNDEDQVFISPQVPIELNHEKLDRSMWQMGLHGVKKSISINGTSFTSDLCSCFSCHNFHKFKDLVSNLKLALGAQGLGQCDRVVFATTGAGLSRVLDMPRSKKQSILTLEGALSLETDYGPKVLGSFEVFKGDFSIKKIEEGSIFVISYRAAIRSSGKLRVHKSECSFSGSREVLLGCQIEASADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD 3333
Range 2: 2553 to 3224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
369.9 bits(801) | 0.0 | 163/224(73%) | 0/224(0%) | Minus/Minus |
Query 1 QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST 672 QP+ SLDPENEH+DL*TLSLP DL AL*++TK++PSSIFL+LKSPLKTS DP+ GP*SVS++ APSR RIDCFLLLG++ T D P PVVA TTLSH P P AP+AN RL +SLNL*KL QEK EQRSDVKLVPLIE+DF P RPICHMLRSSFS F S+GT GL+K *SSS F R V+DTLPL QLETPWK LLC+P GISKNSPGS+ +LQ FPST Subject 2553 QPSKTSLDPENEHSDL*TLSLPEDLIAAL*EMTKIDPSSIFLMLKSPLKTSKDPRTLGP*SVSRDSAPSRVRIDCFLLLGMSSTLDNPAPVVAKTTLSH*PNP*APKANFRLLTKSLNL*KLWQEKHEQRSDVKLVPLIEIDFFTPCRPICHMLRSSFSWFNSIGTCGLMKT*SSSLTF*RLKVRDTLPLEQLETPWK*LLCMPLGISKNSPGSMSKLQ*FPST 3224
Range 3: 3264 to 3335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 19/24(79%) | 0/24(0%) | Minus/Minus |
Query 712 PSVLRRKPTECQKQSPSPGTGKVL 783 PSVL + PTECQKQ PSPGT KVL Subject 3264 PSVLSKNPTECQKQLPSPGTEKVL 3335
Range 4: 2554 to 3327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.5 bits(477) | 0.0 | 119/258(46%) | 0/258(0%) | Minus/Minus |
Query 2 AEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPIXXXXXXXXXXXLEIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN 775 A+ + N VP+A+T+ H K VE+ N IS* N PGK*A F+N A S+ SPVR K+ YL + EIPFKNFK SQ+ T++ F PFK +D L ASWH Q+ + S GE + + LTQ L S ++ Q+L+L+KVM R+A ++*CKA I+*+ FL P++AHLPH +I LLM+ LN +L AN++LI+I L E +SP IGN ME LH P H K+LARFN Q AM+ FN Subject 2554 AK*EPNRVPEAITVAWH*KGVEIINIIIS*GFNLTT*QDFSGPGK*AF*FMNPKFARRSNCSPVRNDKNRPFLYLLDAEIPFKNFKGSQNLGTIIGFKG*CPFKSED*LLFASWHVQHPR*SCTSCGEDNSVALTQPLSAQSQFQVTDQVLKLMKVMAREA*AEI*CKASTID*D*FLYPVQAHLPHASI*LLMV*LNWNLRANEDLILIINLLTPES*GYSPIGTIGNAMEVTTLHAPGHFKKLARFNEQVAMIPFN 3327
Range 5: 2921 to 3328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 61/136(45%) | 0/136(0%) | Plus/Plus |
Query 369 WVSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA 776 WVS SP L W CQEA++S+S LKG + K V + WD LKFLKGIS +R*+ L +LTGLQ D A+ F N +AHFPG RL+ QLI L ST F C V A GT L + A Subject 2921 WVSATELSSPQLVQDYLGCWTCQEAKSSQSSLLKGHYPLKPIMVPRFWDPLKFLKGISASRR*RKGLFLSFLTGLQLDLLANLGFINQNAHFPGPEKSC*VVRLKPQLIMILMISTPFQCQATVIASGTLLGSYLA 3328
Range 6: 2555 to 2833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 47/93(51%) | 0/93(0%) | Plus/Plus |
Query 3 LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQ 281 LK IA LNLAS L+C G CR SM FPI +GE * S + M I+ LA + LS MRS I CGKWA G RN Q M ALHQ Subject 2555 LKGIIATCSLNLASFLKCPGACRVVTSMAFPIVPMGEYP*LSGVRRLMMRIRSSLARRFQLS*TMRS*IEACGKWACTG*RNQSQSMVLALHQ 2833
Range 7: 2978 to 3328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 55/117(47%) | 0/117(0%) | Minus/Minus |
Query 426 C*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*P 776 C* +Q SA+S++ A ++C*+ Q+ NQL QS + TRKMS+ I E C I*L+PCK Q+ LS * *NPL*KLQ IP D ++F PLQ G T CFLA P Subject 2978 C*VRTQQSARSNYRRLALKRC*NHQYHNQLRLQSDNLARLLWTRKMSILIYEP*VCQKI*LQPCKK*QK*TLPLSS*C*NPL*KLQRIPEPWDHNRFQGIVPLQE*GLTAFCFLACP 3328
Range 8: 2699 to 2878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 33/60(55%) | 0/60(0%) | Minus/Minus |
Query 147 P*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHH 326 P*T ESY K+S ++ LM*S H*L+ IS GPFATC D ASH Q G**+ D H Subject 2699 P*TYESYGKRSMSRDLM*S*YH*LRLISLPRAGPFATCFDLASHGLTQLEPAG**RPDPH 2878
Range 9: 2555 to 2665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 22/37(59%) | 0/37(0%) | Minus/Minus |
Query 3 LSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ 113 LSH NWK HG SA P A Q+TRQVQ + CN LQ Subject 2555 LSHWNNWKRHGSDYSACPWAFQKTRQVQ*ASCNDSLQ 2665
Range 10: 2943 to 3269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 51/109(47%) | 0/109(0%) | Plus/Plus |
Query 391 IRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQH 717 +RH W R + +G+AKKQ+ V+P *RG N L S+ GI+*SF*RGFQ+ +DR + C+ LQG + I Q S I MLIFRV+ + L D* +S* * QH Subject 2943 LRHNWCRII*GAGHAKKQKAVNPHS*RGTIP*NRLWSQGSGIL*SF*RGFQHQEDRGRVYFCHFLQGCN*IFWQT*GS*IRMLIFRVQRSLARLSD*SLS*L*Y**FQH 3269
Grapevine rupestris stem pitting associated virus isolate TEMP BR replicase, 24.4 kDa protein, 12.8 kDa protein, 8.4 kDa protein, and 28 kDa protein genes, complete cds
Sequence ID: KX925556.1 Length: 8700 Number of Matches: 10
Range 1: 2543 to 3322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
535.8 bits(1163) | 0.0 | 225/260(87%) | 0/260(0%) | Plus/Plus |
Query 2 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD 781 VEGNHC LTIEP EFFEMPRGMQ N+FHGVSNC GRVSLTFRRQKLE+DD IFI+PQVPIE NHEKLDR+MWQ+GLHGIKKSIS+NGTSFTSDLCSCFSCHNFHKFKDLINNL+LALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSILVLEGALS+ETD+GPK+LGSFEVFKGDF+IKK+E+GSIFVISY+APVRSTGKLRVHKS CSFSGS+E+LLGC IEA AD++I+DFNTF VPGDG+CFWHSVGFLLSTD Subject 2543 VEGNHCCLTIEPDEFFEMPRGMQCNYFHGVSNCTQGRVSLTFRRQKLEEDDLIFINPQVPIELNHEKLDRSMWQLGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINNLRLALGAQGLGQCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDFGPKVLGSFEVFKGDFNIKKMEEGSIFVISYKAPVRSTGKLRVHKSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD 3322
Range 2: 2542 to 3213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
387.8 bits(840) | 0.0 | 173/224(77%) | 0/224(0%) | Minus/Minus |
Query 1 QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST 672 QP+N SLDPENEH+DL*TL+LPVDLTGAL DITKMEPSSIFL+LKSPLKTS DP+ GP SVS +RAPSRT+IDCFLL GI++T DRP PVVANTTLSH P P AP+ANL+L IRSLNL*KL QEKQEQRS+VKLVP IE+DFLIP RP CHMLRSSFS* S+GT G I I SSSS+FWR V+DT P QLETPWK L CIP GISKNS GSIVR Q FPST Subject 2542 QPSNTSLDPENEHSDL*TLNLPVDLTGALYDITKMEPSSIFLMLKSPLKTSKDPRTLGPKSVSIDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH*PSPCAPKANLKLLIRSLNL*KLWQEKQEQRSEVKLVPFIEIDFLIP*RPSCHMLRSSFS*LSSIGTCGFINIRSSSSSFWRLKVRDTRP*VQLETPWK*LHCIPLGISKNSSGSIVRQQ*FPST 3213
Range 3: 3253 to 3324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 20/24(83%) | 0/24(0%) | Minus/Minus |
Query 712 PSVLRRKPTECQKQSPSPGTGKVL 783 PSVL +KPTECQKQ PSPGT KVL Subject 3253 PSVLSKKPTECQKQLPSPGTEKVL 3324
Range 4: 2543 to 2884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 55/114(48%) | 0/114(0%) | Minus/Minus |
Query 2 EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN 343 +I+ +ILEL+K++ R+ R +V* +ACAI+ N FLDPM+ LPH ++KL MI N HL K II F FLA E + P IGN ME + LH+PRH ++L R NC A ++S + Subject 2543 QIIDKILELMKIVARETRAEV*GEACAIHRN*FLDPMKTQLPHASVKLFMIEFNRHLWIYKYQIIFFQFLAPEG*GYPPLSTIGNPMEVITLHSPRHFEKLIRLNC*ATVISLD 2884
Range 5: 2921 to 3322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 58/134(43%) | 0/134(0%) | Minus/Minus |
Query 380 VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPI 781 V E + N*+PKA+ +TR+R+S+++ N IS CL A L PGK*A FVN * GS+W V Y+K+G + + F+ E+P +NFK Q+F T V F R G K++D LF AS H N G ++ PI Subject 2921 VSTE*ETN*MPKAIAVTRYRESIKIINIIISTCLYLAT*QYLLGPGK*AL*FVNP*FTGGSNWGLV*YHKNGALLHFFDVEVPLENFKGPQNFRTKVCFDR*GTLKNQD*LFFASGHF*NFR*TGACCCKHHPI 3322
Range 6: 2673 to 3323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 103/217(47%) | 0/217(0%) | Minus/Minus |
Query 132 RRC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PELVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFG 782 R+ * +QL+AKS+ HQ Q K *+ Q+ NQ MP SG+ P TRKMS ICE L WI*L PC I Q+W+ F* *+P *KLQ P D+S F G Q TV CF A +L R + PYHT L L+LT + DP*T E+ K++K++GL *SLCH K IS*SH P ATC QA HD Q A * DH L +FG Subject 2673 RQY*VRNQLNAKSNCRHQVQRKY*NHQYHNQHMPLSGNLAIPPWTRKMSTLICEPLIYRWI*LGPCMISQKWSPPPFF*C*SPP*KLQRTPEL*DQSLFR*IGHPQEPRLTVFCFGAFLKL*IDRGLLLQTPPYHTDLALVLLKLTSNY**DP*TYENCGKRNKSRGLR*SLCHS*KLIS*SHEDPVATCFGQAFHD*VQ*APVDL*ISDHLLPVFG 3323
Range 7: 2550 to 2639 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 14/30(47%) | 0/30(0%) | Minus/Minus |
Query 9 NWKHHGKSCSAYPEASQRTRQVQLSGCNGF 98 NWK HG + A+P A ++T Q QL G + F Subject 2550 NWKPHGSNYIAFP*AFRKTHQAQLLGNSDF 2639
Range 8: 2913 to 3323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 63/137(46%) | 0/137(0%) | Plus/Plus |
Query 372 VSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT 782 VSVIG P KF C EA+NS+S L+ P+L K T V K W LKF +G S K+ + P L*Y T Q DP +* FTN AHFPG AR RH LI L L L LV AFG QL +S T Subject 2913 VSVIGWCLQQQAPVYLKF*KCPEAKNSQSWFLRVPYLSKQTLVLKFWGPLKFSRGTSTSKKWRRAPFL*YHTRPQLDPPVN*GFTNQSAHFPGPRRYC*VAR*RHVLIMILMILILSLYLVTAIAFGIQLVSYSVLT 3323
Range 9: 2547 to 2843 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 49/99(49%) | 0/99(0%) | Plus/Plus |
Query 6 KETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFL 302 +E A*QL+L S +CLG C SM FPI G * S AKN K MI +L +C L+ IM+SL CG W MGSRN F MAQA QT L L Subject 2547 REITVA*QLSLMSFSKCLGECNVITSMGFPIVLKGGYP*PSGAKNWKKMI*YL*IHRCLLNSIMKSLTEACGNWVFMGSRNQFL*MAQASPQTSALVSL 2843
Range 10: 2551 to 3267 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 106/239(44%) | 0/239(0%) | Plus/Plus |
Query 10 KPLQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC 726 K L P+N* V +A G A L PW FQL + ++ PK R *S+ Y A+* +S*+A* +HVA G WDQEI+F WHKL++RPL L L S VQGS + +VS R R V**G + + R + S A KQ+TV+ * P +RN L S + G++*SF G Q+ K+ H C+I+QG S IHR K SQI +LIFRV+G + LPD G+ * * +F C Subject 2551 KSLLPNN*A**VFRNA*GNAM*LLPWGFQLYSRAGIPNLQAPKTGRR*SDIYKSTGAY*TQS*KA*PKHVATGSSWDQEINFYEWHKLHLRPLLLFLLPQFS*VQGSYQ*FEVSFRSTRARSV**GGVCNNRPRSI*SFRNAPKQKTVNLGS*GCPIYRNRLWS*SSGVL*SFQGGLQHQKNGGGLHFCDIIQGPS*IHR*IKGSQIRVLIFRVQGGIARLPDRGMC*L*Y**F*YFLC 3267
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 10
Range 1: 2554 to 3333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
534.0 bits(1159) | 0.0 | 224/260(86%) | 0/260(0%) | Plus/Plus |
Query 2 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD 781 VEGNHCSLTI P EFFEMPRGMQ N+FHGVSNC GRVSLTFRRQKLEDDD IFI+PQVPIE NHEKLDR+MWQMGLHGIKKSIS+NGTSFTSDLCSCFSCHNFHKFKDLINNL+LALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSILVLEGALS+ETDYGPK+LGSFEVFKGDF IKK+E+GSIFVI+Y+AP+RSTG+LRVH S CSFSGS+E+LLGC IEA AD++I+DFNTF VPGDG+CFWHSVGFLLSTD Subject 2554 VEGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINNLRLALGAQGLGQCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFQIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD 3333
Range 2: 2553 to 3224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
379.1 bits(821) | 0.0 | 170/224(76%) | 0/224(0%) | Minus/Minus |
Query 1 QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST 672 QP+N SLDPENEH++L*TL+LPVDL GAL ITKMEPSSIFLI KSPLKTS DP+ FGP*SVS +RAPSRT+IDCFLL GI++T DRP PVVANTTLSH P P APRANL+L +RSLNL*KL QEKQE RS+VKLVP IE+DFLIP RPICH+LRSSFS* SMGT G + I SSSSNFWR V+DT P QLETPWK L C+P GISKNS G IVRLQ PST Subject 2553 QPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLI*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH*PSPCAPRANLKLLMRSLNL*KLWQEKQEHRSEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMNIKSSSSNFWRLKVRDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPST 3224
Range 3: 3264 to 3335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 20/24(83%) | 0/24(0%) | Minus/Minus |
Query 712 PSVLRRKPTECQKQSPSPGTGKVL 783 PSVL +KPTECQKQ PSPGT KVL Subject 3264 PSVLSKKPTECQKQLPSPGTEKVL 3335
Range 4: 2554 to 2895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 57/114(50%) | 0/114(0%) | Minus/Minus |
Query 2 EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN 343 ++V +ILE +KV+ R+ R V* K AI+ N FL+ M+ HLPH ++KL MI LNGHL + III LA + Q +SP + IGN ME +ALH PRH ++L NCQAAM++ N Subject 2554 QVVDEILEFMKVVARETRA*V*GKTRAIHRNRFLNSMKTHLPHTSVKLFMIELNGHLWIYEYQIIILQLLAPKGQGYSPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITLN 2895
Range 5: 2983 to 3333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 56/117(48%) | 0/117(0%) | Minus/Minus |
Query 431 VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWH 781 + A+ K N +PKA+ ITRHR+SV++ N IS CLN AA L GK*A VN A GS+W V YYK+GT +L N ++PF+NF+ QDFWT++ F G FK+++ L A H Subject 2983 ISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVCYYKNGTFLHLLNLKVPFENFERPQDFWTIICFYG*GTFKNQN*LLFAPRH 3333
Range 6: 3017 to 3331 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 56/105(53%) | 0/105(0%) | Minus/Minus |
Query 465 RC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQ 779 +C* ++Q +AKS+ HHQAQ KC*+ Q+ NQ MPQSGS P RKMS+ CE C WI*L PC +LQ+WN S *+ +PL*KL+ P LD + FL G LQ Subject 3017 QC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCMLLQKWNLPPSS*FESPL*KLRKTPGLLDHNLFLWIGHLQ 3331
Range 7: 2555 to 2890 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 53/112(47%) | 0/112(0%) | Minus/Minus |
Query 3 CLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ 338 C DP* ES K++K+ GL *+ CH K IS* H P AT QA HD AQWA * +HH FG S L+ + NWK HG +C A P A ++T QLSGCN + Q Subject 2555 C**DP*IYESCGKRNKSIGLR*NSCHS*K*IS*FHEDPSATYFGQAFHD*AQWAPVDL*ISNHHPPTFGA*RSGILALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQ 2890
Range 8: 2972 to 3328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 58/119(49%) | 0/119(0%) | Plus/Plus |
Query 420 KFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA 776 KF C A++++ LK P+ *K VQKSW KF KG L+R + VP L* T Q DP A * FT +AHFP AARLRH LI L TL LCLVM AFG L F+ A Subject 2972 KF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLSKFSKGTFKLRRWRKVPFL**HTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLA 3328
Range 9: 2555 to 2854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 48/100(48%) | 0/100(0%) | Plus/Plus |
Query 3 LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFL 302 L+ IAA*QL S +CLG C A SM FPI GE * AK+ +MMI + +CPLS IM+SL CG+W M RN F MA+ L QT+ L L Subject 2555 LRVIIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGEYP*PLGAKSWRMMI*YS*IHRCPLSSIMKSLTEVCGRWVFMELRNLFL*MARVLPQTYALVSL 2854
Range 10: 2568 to 3278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 100/237(42%) | 0/237(0%) | Plus/Plus |
Query 16 LQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC 726 LQPDN V +A G+A QL PW FQL S+ D+ PK+ ** + + AH*A+S*+A* ++VA+G W+ EI+F WH+ Y+RP+ L L LS +QGS +Q ++ R R V* G + + + S A +Q+ ++ *R P RN L SK+ G+ SF RG *+D FH CN +QG + IH Q + SQ MLIFR++G + LPD*G+ * * HF C Subject 2568 LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARASIPDL*APKVGG**FDIHKSTGAH*AQS*KA*PKYVADGSSWN*EIYFYEWHEFYLRPMLLFLLPQLS*IQGSHQQLEIGPRSTRARSV*QGCVCNNRSWSI*SFRNASEQKAINFGS*RCPIHRNRLWSKSPGVFRSFQRGLSN*EDGGRFHFCNNIQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLC 3278
Nucleotide Sequence (123 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
101.4 | 579.2 | 33% | 6.324e-21 | 92% | KX274275.1 | |
101.4 | 546.6 | 33% | 6.336e-21 | 85% | AY368590.1 | |
101.4 | 174.0 | 33% | 6.336e-21 | 77% | KR054734.1 | |
101.4 | 326.1 | 41% | 6.336e-21 | 53% | KX958435.1 | |
99.1 | 205.3 | 33% | 3.101e-20 | 45% | AY881627.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 5199 to 5318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 39/40(98%) | 0/40(0%) | Minus/Minus |
Query 2 CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGIW 121 CSSKNCWVVS*PHLTSRCSFNAIFPTHL LVDSKLLNGIW Subject 5199 CSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIW 5318
Range 2: 5200 to 5319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 39/40(98%) | 0/40(0%) | Plus/Plus |
Query 3 HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH 122 HIPLSNLESTR RWVGKMALKEHREVRCGYETTQQFFDEH Subject 5200 HIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEH 5319
Range 3: 5198 to 5320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 38/41(93%) | 0/41(0%) | Minus/Minus |
Query 1 CVRQRTVGSFHNHISLHGVPSTPSFQPT*PWLIPSYLMGYG 123 CV QRTVGSFHNHISLHGVPSTPSFQPT PW IPSYLMGYG Subject 5198 CVHQRTVGSFHNHISLHGVPSTPSFQPTWPWSIPSYLMGYG 5320
Range 4: 5200 to 5319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 37/40(92%) | 0/40(0%) | Minus/Minus |
Query 3 VFVKELLGRFITTSHFTVFLQRHLSNPPDPG*FQVT*WDM 122 VF+KELLGRFITTSHFTVFLQRHLSNPP PG FQVT*WDM Subject 5200 VFIKELLGRFITTSHFTVFLQRHLSNPPGPGRFQVT*WDM 5319
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 5200 to 5319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 39/40(98%) | 0/40(0%) | Plus/Plus |
Query 3 HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH 122 HIPLSNLESTR RWVGKMALKEHREVRCGYETTQQFFDEH Subject 5200 HIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEH 5319
Range 2: 5199 to 5318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 38/40(95%) | 0/40(0%) | Minus/Minus |
Query 2 CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGIW 121 CSSKNCWVVS*PHLTSRCSFNAIFPTHL LVDS+LLNGIW Subject 5199 CSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIW 5318
Range 3: 5198 to 5317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 35/40(88%) | 0/40(0%) | Minus/Minus |
Query 1 VRQRTVGSFHNHISLHGVPSTPSFQPT*PWLIPSYLMGYG 120 V QRTVGSFHNHISLHGVPS PSFQPT P LIP YLMGYG Subject 5198 VHQRTVGSFHNHISLHGVPSMPSFQPTWPLLIPDYLMGYG 5317
Range 4: 5199 to 5318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 36/40(90%) | 0/40(0%) | Plus/Plus |
Query 2 PYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RT 121 PYPIK* GIN+GQVGWKDG+EGTP*SEMWL*NDPTVL* T Subject 5199 PYPIK*SGINKGQVGWKDGIEGTP*SEMWL*NDPTVL**T 5318
Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome
Sequence ID: KR054734.1 Length: 8753 Number of Matches: 2
Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome
Sequence ID: KX958435.1 Length: 8743 Number of Matches: 5
Range 1: 5201 to 5320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 39/40(98%) | 0/40(0%) | Plus/Plus |
Query 3 HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH 122 HIPLSNLESTR RWVGKMALKEHREVRCGYETTQQFFDEH Subject 5201 HIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEH 5320
Range 2: 5203 to 5319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 32/39(82%) | 0/39(0%) | Minus/Minus |
Query 5 CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGI 121 CSSKNC VVS PH TSRCSF AIFPTHL LVDSKLL G+ Subject 5203 CSSKNC*VVSYPHRTSRCSFKAIFPTHLALVDSKLLKGM 5319
Range 3: 5217 to 5321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 19/35(54%) | 0/35(0%) | Minus/Minus |
Query 19 CVRQRTVGSFHNHISLHGVPSTPSFQPT*PWLIPS 123 CV +R FH HI HG PS P QP *PWL P+ Subject 5217 CVHRRIAELFHTHIVPHGAPSRPFSQPI*PWLTPN 5321
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 3
Range 1: 5200 to 5319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 38/40(95%) | 0/40(0%) | Plus/Plus |
Query 3 HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH 122 HIPLSNLESTR RWVGKMALKEHREVRCGYE TQQFFDEH Subject 5200 HIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEH 5319
Nucleotide Sequence (327 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
259.0 | 1414.8 | 41% | 1.485e-67 | 95% | AB277783.1 | |
258.6 | 1427.5 | 41% | 2.041e-67 | 97% | KX274275.1 | |
252.2 | 1297.5 | 41% | 1.741e-65 | 82% | AY368590.1 | |
245.3 | 819.9 | 48% | 2.041e-63 | 52% | AF026278.1 | |
244.4 | 855.2 | 49% | 3.782e-63 | 52% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8
Range 1: 578 to 901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 106/108(98%) | 0/108(0%) | Minus/Plus |
Query 2 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP 325 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WHGVIIMNNLVKALSTFEFVG+YSVLRFP Subject 578 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFP 901
Range 2: 576 to 902 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
246.7 bits(532) | 0.0 | 104/109(95%) | 0/109(0%) | Plus/Minus |
Query 1 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V 327 LEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTTQKLSTSSC YF*LGTAH+CSVLQLPLHSSFQL TRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V Subject 576 LEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTTQKLSTSSCVYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V 902
Range 3: 577 to 900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.5 bits(499) | 0.0 | 104/108(96%) | 0/108(0%) | Minus/Plus |
Query 3 THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS 326 THLGENLHCS*NG*PGELH**LCN*GILCLQAGRV+N*NDE*RGS*STLQLCAVPS*K* QDEVLNFWVV*SYRLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQIS Subject 577 THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*TQDEVLNFWVV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQIS 900
Range 4: 577 to 900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.8 bits(493) | 0.0 | 106/108(98%) | 0/108(0%) | Plus/Minus |
Query 3 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 GNLSTL* PTNSNVDKALTKLFIIITPCQ LKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS Subject 577 GNLSTL*IPTNSNVDKALTKLFIIITPCQILKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 900
Range 5: 716 to 901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Minus |
Query 2 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVVC 187 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLV ISN*EPHT+VVC Subject 716 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVFISN*EPHTVVVC 901
Range 6: 578 to 676 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 33/33(100%) | 0/33(0%) | Plus/Minus |
Query 227 AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE 325 AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE Subject 578 AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE 676
Range 7: 576 to 827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 81/84(96%) | 0/84(0%) | Minus/Plus |
Query 76 NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 327 NSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS QLK**MKRKLKHTT VCGS*LEI+TR*GAQFLGCLKL*IRP*VFGMV* Subject 576 NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEINTR*GAQFLGCLKL*IRP*VFGMV* 827
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7
Range 1: 6322 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.6 bits(558) | 0.0 | 107/108(99%) | 0/108(0%) | Minus/Plus |
Query 2 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP 325 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP Subject 6322 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP 6645
Range 2: 6320 to 6646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.1 bits(546) | 0.0 | 107/109(98%) | 0/109(0%) | Plus/Minus |
Query 1 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V 327 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAH+CSVLQLPLHSSFQL TRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V Subject 6320 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLPTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V 6646
Range 3: 6321 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.3 bits(518) | 0.0 | 107/108(99%) | 0/108(0%) | Minus/Plus |
Query 3 THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS 326 THLGENLHCS*NG*PGELH**LCN*GILCLQAGRV N*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS Subject 6321 THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVGN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS 6644
Range 4: 6321 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.6 bits(497) | 0.0 | 107/108(99%) | 0/108(0%) | Plus/Minus |
Query 3 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISI NSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS Subject 6321 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIANSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 6644
Range 5: 6322 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.8 bits(480) | 0.0 | 105/108(97%) | 0/108(0%) | Plus/Minus |
Query 2 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVVCXXXXXXXXXXXXXAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE 325 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHT+VVCFNFLFIHHFN LAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE Subject 6322 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCFNFLFIHHFNCQLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE 6645
Range 6: 6320 to 6571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 82/84(98%) | 0/84(0%) | Minus/Plus |
Query 76 NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 327 NSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS+QLK**MKRKLKHTT VCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* Subject 6320 NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASWQLK**MKRKLKHTTTVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 6571
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8
Range 1: 6322 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
252.2 bits(544) | 0.0 | 106/108(98%) | 0/108(0%) | Minus/Plus |
Query 2 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP 325 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWH IIMNNLVKALSTFEFVGVYSVLRFP Subject 6322 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFP 6645
Range 2: 6326 to 6646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.0 bits(476) | 0.0 | 93/107(87%) | 0/107(0%) | Plus/Minus |
Query 1 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK 321 LEI*ARYKHPQTQT*TKL*LSYS**S++AKHLRPNL*LQT QKLS SSCAYF* GTAH+CS LQLPLHSSFQL TRP CRHR PQLH+YQC+ PG PFHEQCKFSPK Subject 6326 LEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL*LQTIQKLSISSCAYF*PGTAHSCSALQLPLHSSFQLTTRPTCRHRTPQLHNYQCNFPGCPFHEQCKFSPK 6646
Range 3: 6321 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 103/108(95%) | 0/108(0%) | Plus/Minus |
Query 3 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 GNLSTL*TPTNSNVDKALTKLFIII CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSP+L*A*DTSIA*LSMQFSRLPISRAMQILSQ++ Subject 6321 GNLSTL*TPTNSNVDKALTKLFIII**CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN 6644
Range 4: 6327 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 95/106(90%) | 0/106(0%) | Minus/Plus |
Query 3 LGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS 320 LGENLHCS*NG PG+LH**LCN*G+LCLQ GRV+N*NDE*RGS*S LQLCAVP *K*AQDE+LNFW+V*SYRLGLKCLA DYYE*LS*SFVYV*VCGCL*RAQIS Subject 6327 LGENLHCS*NGQPGKLH**LCN*GVLCLQVGRVVN*NDE*RGS*SALQLCAVPG*K*AQDEMLNFWIV*SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQIS 6644
Range 5: 6463 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 55/61(90%) | 0/61(0%) | Plus/Minus |
Query 2 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVV 184 WKSEHAINTHKLKRRQSFN*VIHNN MPNT*GLIYSFKQ RN*A HLVLISN EPHT+VV Subject 6463 WKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV 6645
Range 6: 6322 to 6420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 27/33(82%) | 0/33(0%) | Plus/Minus |
Query 227 AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE 325 AQPVGIG+LNCI+INA+ QV HFTSNANSLPN+ Subject 6322 AQPVGIGHLNCIIINAIFQVAHFTSNANSLPNQ 6420
Range 7: 6326 to 6568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 68/81(84%) | 0/81(0%) | Minus/Plus |
Query 79 FGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV 321 FGREFALLVKW TW+ ALI MQLR PMPTGWAS QLK**MKRKLK TT VCGS LEISTR* AQFL CLKL*IRP*VFG++ Subject 6326 FGREFALLVKWATWKIALIIMQLRCPMPTGWASCQLK**MKRKLKRTTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFGII 6568
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 7
Range 1: 6322 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 101/108(94%) | 0/108(0%) | Minus/Plus |
Query 2 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP 325 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALSTFEFVGV+SVL+FP Subject 6322 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVLKFP 6645
Range 2: 6321 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 86/108(80%) | 0/108(0%) | Plus/Minus |
Query 3 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 GNLSTL TPTNSNVD ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+D+SPS A*+TSIA*LS+QFSRLPIS AM I SQ++ Subject 6321 GNLSTLKTPTNSNVDNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMDSSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN 6644
Range 3: 6324 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 56/107(52%) | 0/107(0%) | Minus/Plus |
Query 3 HLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS 323 +LG ++HC +G*PGEL+* LC+ G+LC+ AGR I+*ND+ S L LC + + A DE+LNF +*S LGLK LA +YYE* S*S V +*VC C A IS Subject 6324 NLGADMHC*GDG*PGELY*QLCDRGLLCVPAGRAIH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVNI*VCRCFQCA*IS 6644
Range 4: 6463 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 34/61(56%) | 0/61(0%) | Plus/Minus |
Query 2 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVV 184 WK +H NT+KLK Q FN*+IHN MPNT*GLI FK N*A HL+L+ + E +TI++ Subject 6463 WKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIM 6645
Range 5: 6325 to 6420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 18/32(56%) | 0/32(0%) | Plus/Minus |
Query 227 AQPVGIGYLNCIVINAVLQVTHFTSNANSLPN 322 +QPV IG L I++N +LQVTH SNA LP+ Subject 6325 SQPVRIGDLYRIIVNTILQVTHLPSNAYPLPD 6420
Range 6: 6326 to 6646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 56/107(52%) | 0/107(0%) | Plus/Minus |
Query 1 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK 321 LEI*A KH QTQ T L*L+YS* S++AK+LRPN LQ KLS SS A * HN + L SSFQ I PA HR P H+ Q +SPGYP QC +P+ Subject 6326 LEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWIALPAGTHRRPLSHNCQYNSPGYPSP*QCISAPR 6646
Range 7: 6329 to 6571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 43/81(53%) | 0/81(0%) | Minus/Plus |
Query 76 GREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 318 G +ALL +WVTWR L M+ R PM TGW SY LK** ++K + IV S S R* AQF LK IRP*VFG++* Subject 6329 GSGYALLGRWVTWRIVLTIMR*RSPMRTGWESYPLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII* 6571
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 7
Range 1: 6322 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.4 bits(527) | 0.0 | 99/108(92%) | 0/108(0%) | Minus/Plus |
Query 2 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP 325 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEA+D*ALS+WH + IMNNLVKALSTFEF+GV+SVL+FP Subject 6322 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFP 6645
Range 2: 6321 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 88/108(81%) | 0/108(0%) | Plus/Minus |
Query 3 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 GNLSTL TP NS VD ALTKLFII+ CQ LKA*S ASN PEIEHLILCLFLTRN TQL*CASTSSS IIS+D+SP+L A*DTSIA*LSMQFSRLPIS AM I SQ+S Subject 6321 GNLSTLKTPINSKVDNALTKLFIILKQCQILKA*STASNRPEIEHLILCLFLTRNLTQL*CASTSSSVIISMDSSPNLYA*DTSIA*LSMQFSRLPISLAMHIRSQIS 6644
Range 3: 6460 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 40/62(65%) | 0/62(0%) | Plus/Minus |
Query 2 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVVC 187 WK +H NT+K + Q FN +IHN TMPNT*GLI FK N*APHL+L+ N*EPHTIVVC Subject 6460 WKFKHTENTYKFEG*QCFNQIIHNTQTMPNT*GLINRFK*A*N*APHLMLVPN*EPHTIVVC 6645
Range 4: 6325 to 6417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 16/31(52%) | 0/31(0%) | Plus/Minus |
Query 230 QPVGIGYLNCIVINAVLQVTHFTSNANSLPN 322 Q + IG+L I+INAVL + H + A SLPN Subject 6325 QSICIGHLYRIIINAVL*IAHLSGYAYSLPN 6417
Range 5: 6326 to 6646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 58/107(54%) | 0/107(0%) | Plus/Minus |
Query 1 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK 321 LEI*A KH + T L* +YS* S++AK+LRPN LQ KLSTSS A *LGT+HNCSV P SSF+ I P HR P H+YQCSS P C F+PK Subject 6326 LEI*AH*KHL*IRRLTML*PNYS*YSNNAKYLRPNQPLQIGLKLSTSSYACS*LGTSHNCSVPPPPPLSSFRWIAHPIYMHRTPLSHNYQCSSLDCPSLWLCIFAPK 6646
Range 6: 6321 to 6644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 56/108(52%) | 0/108(0%) | Minus/Plus |
Query 3 THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS 326 T+LG N+H +G ELH**LC+ G+LC+ G I+ ND+ G TLQLC VPS*+ A DEVLNF +*S LGLK LA +YYE* *S V + + C A IS Subject 6321 TNLGANMHSQRDGQSRELH**LCDRGVLCI*IG*AIHRNDDRGGGGGTLQLCEVPS*EQA*DEVLNFRPI*SG*LGLKYLALFEYYE*FG*SIVNLRIYRCFQCA*IS 6644
Range 7: 6320 to 6571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 49/84(58%) | 0/84(0%) | Minus/Plus |
Query 76 NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 327 N FG E+A +W RTALI M+ R PM W SY K** +R+ +HTTIV GS*L S R*GAQF LK IRP*VFG+V* Subject 6320 N*FGSEYA*PERWAI*RTALIIMR*RCPMHIDWVSYPSK**QRRRWRHTTIV*GS*LGTSIR*GAQFQAYLKRLIRP*VFGIV* 6571
Nucleotide Sequence (1262 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
975.2 | 5434.9 | 31% | 0 | 95% | AB277783.1 | |
972.5 | 5440.0 | 31% | 0 | 91% | KX274275.1 | |
912.0 | 5098.0 | 32% | 0 | 88% | AY368590.1 | |
705.3 | 3498.1 | 17% | 0 | 50% | KR528585.1 | |
704.4 | 3430.1 | 30% | 0 | 48% | KR054735.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 10
Range 1: 1516 to 2775 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
975.2 bits(2122) | 0.0 | 406/420(97%) | 0/420(0%) | Minus/Minus |
Query 2 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ 1261 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRG+ISDHLSFGWSSLNATL FKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMD+PHDFCIVHAKSAQGSHFP YSSNFRPIQVTEGTLSN G*SLRATN+RAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPL FSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARH+T+LTMIINFFTNMANP*SLQTS HFLNC*SKRLTWATILN*Y*LPCSPYETTMI+TIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRP NALHVEIDVCCPLSMANLTFLGN A SQCPSQSSMG**FWPNSQ Subject 1516 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGDISDHLSFGWSSLNATLWFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDVPHDFCIVHAKSAQGSHFPNYSSNFRPIQVTEGTLSN*G*SLRATNVRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLSFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHMTMLTMIINFFTNMANP*SLQTSQHFLNC*SKRLTWATILN*Y*LPCSPYETTMIITIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPYNALHVEIDVCCPLSMANLTFLGNEALSQCPSQSSMG**FWPNSQ 2775
Range 2: 1750 to 2775 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
788.7 bits(1715) | 0.0 | 337/342(99%) | 0/342(0%) | Plus/Plus |
Query 236 **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 1261 **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALAST+KEVLGGLKALGVSHIGEEIDYHC*+C+MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISE DQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN Subject 1750 **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTIKEVLGGLKALGVSHIGEEIDYHC*HCHMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 2775
Range 3: 1516 to 1713 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 63/66(95%) | 0/66(0%) | Plus/Plus |
Query 2 LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF 199 LRIGPKLSPH*RLAWALA C IS*ESQICHTQGTTYINFHMEGV GTAPKA*HIVVPNSHSQALGF Subject 1516 LRIGPKLSPH*RLAWALA*CFIS*ESQICHTQGTTYINFHMEGVIGTAPKA*HIVVPNSHSQALGF 1713
Range 4: 1515 to 2774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
904.2 bits(1967) | 0.0 | 406/420(97%) | 0/420(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ 1260 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W* SWLSHKGYRGVNIN*ELWPK*GACFN+*GS RFEGFRG*PYW*RN*LSLL L YGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*K+EGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIR RSV*RCDRYCTPLL* W*LSKINL+WKESLL*PE*V*NCWNN GSDYPAQILHVLCKNRVE+PSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*+KGWR*ESSNQS*DGR*Y LF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ Subject 1515 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W**SWLSHKGYRGVNIN*ELWPK*GACFNN*GSVGRFEGFRG*PYW*RN*LSLLTLSYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KKEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRERSV*RCDRYCTPLL*RW*LSKINLNWKESLL*PE*V*NCWNN*GSDYPAQILHVLCKNRVEHPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*TKGWR*ESSNQS*DGR*YRLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ 2774
Range 5: 1788 to 2774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
725.0 bits(1576) | 0.0 | 323/329(98%) | 0/329(0%) | Minus/Minus |
Query 274 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 1260 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*S SDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*Q *Q**SISSPIWLTPKAFKPP+TSL VEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP Subject 1788 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPNTSLIVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 2774
Range 6: 1515 to 1736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 71/74(96%) | 0/74(0%) | Minus/Minus |
Query 1 HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR 222 HKILRLTKKPRAWE*LFGTTICYAFGAVP+TPSMWKLMYVVP*VWQI*LS*EM+H ANAQANRQWGDSFGPIRR Subject 1515 HKILRLTKKPRAWE*LFGTTICYAFGAVPITPSMWKLMYVVP*VWQI*LS*EMKH*ANAQANRQWGDSFGPIRR 1736
Range 7: 1517 to 2734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
847.4 bits(1843) | 0.0 | 394/406(97%) | 0/406(0%) | Plus/Plus |
Query 3 CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAPI 1220 CELGQNYHPIDDWLGHWL A+FPKKVKFAILRGQHTSISTWRAL GRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMV IMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC EV*RL*GLAILVKKLIIIV IVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFLLK RGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIAL LVALKDQP*LERVPSVT*IGLKLLE* GK*LPCADFACTMQKSCG SIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARL QRVALRELQPKLRWSLI PLLRSRCSDKLWLKESGAPI Subject 1517 CELGQNYHPIDDWLGHWLSASFPKKVKFAILRGQHTSISTWRAL*GRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVIIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKCWEV*RL*GLAILVKKLIIIVNIVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFLLKERGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALTLVALKDQP*LERVPSVT*IGLKLLE*LGK*LPCADFACTMQKSCGTSIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLNQRVALRELQPKLRWSLISPLLRSRCSDKLWLKESGAPI 2734
Range 8: 2279 to 2776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
368.6 bits(798) | 0.0 | 159/166(96%) | 0/166(0%) | Minus/Minus |
Query 765 Y**EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLEST 1262 Y**EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKR+Y*RPSQLWLELS*RHPL+QARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDG STRFLHSTCKICAG*SLP LFQQFQTYSGHRRDSFQ RLIFESYQ QSNGVQYLSQR*TDR LICQTHRMLEST Subject 2279 Y**EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRRY*RPSQLWLELS*RHPLVQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGCSTRFLHSTCKICAG*SLP*LFQQFQTYSGHRRDSFQLRLIFESYQRQSNGVQYLSQR*TDRSLICQTHRMLEST 2776
Range 9: 1517 to 1918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.7 bits(626) | 0.0 | 132/134(99%) | 0/134(0%) | Minus/Minus |
Query 3 GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA 404 GHNSQLILTPL*PL*DNHD HHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRK STKPMPKPIVNGVIVLAQFA Subject 1517 GHNSQLILTPL*PL*DNHDYHHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRK*STKPMPKPIVNGVIVLAQFA 1918
Range 10: 1979 to 2248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.8 bits(456) | 0.0 | 87/90(97%) | 0/90(0%) | Minus/Minus |
Query 465 EIAQQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG* 734 EIAQQTRASTPPACPQFLKEHFQ*PS F*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPY+N NNDNQFLHQYG* Subject 1979 EIAQQTRASTPPACPQFLKEHFQ*PSFF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYDNVNNDNQFLHQYG* 2248
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 10
Range 1: 7260 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
972.5 bits(2116) | 0.0 | 402/420(96%) | 0/420(0%) | Minus/Minus |
Query 2 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ 1261 +DKSTSSSATNLSKIG PLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATL FKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGT SNQG*SLRAT+IRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPF KNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARH+T+LTMIINFFTNMANP*SLQTS HFLNC*SKRLTWATILN*Y*LPCSPYETTMI+TIIAVDMCKD*GCNCSAYKNQNSKQIVHIW PLILLQLLKAQNSQTDQ+AQSLGMTVWDHNMLCFWC P NALHVEIDVCCPL+MANLTFL NAAPSQCP QSS G**FWPNSQ Subject 7260 VDKSTSSSATNLSKIGTPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLWFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTFSNQG*SLRATDIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFGKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHMTMLTMIINFFTNMANP*SLQTSQHFLNC*SKRLTWATILN*Y*LPCSPYETTMIITIIAVDMCKD*GCNCSAYKNQNSKQIVHIWMPLILLQLLKAQNSQTDQRAQSLGMTVWDHNMLCFWCHPYNALHVEIDVCCPLNMANLTFLENAAPSQCPRQSSTG**FWPNSQ 8519
Range 2: 7259 to 8518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
915.2 bits(1991) | 0.0 | 409/420(97%) | 0/420(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ 1260 PANWAKTITPLTIG+GIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W* SWLSHKGYRGVNIN*ELWPK*GACFNS*GSA RFEGFRG*PYW*RN*LSLL L YGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIR RSV*RCDRYCTPLL*C *LSKINLDWK+SLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*+KGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAE QSWRD*WRNCWCSYQ Subject 7259 PANWAKTITPLTIGVGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W**SWLSHKGYRGVNIN*ELWPK*GACFNS*GSAGRFEGFRG*PYW*RN*LSLLTLSYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSCQKEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRERSV*RCDRYCTPLL*CR*LSKINLDWKKSLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*TKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAEFQSWRD*WRNCWCSYQ 8518
Range 3: 7494 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
785.1 bits(1707) | 0.0 | 337/342(99%) | 0/342(0%) | Plus/Plus |
Query 236 **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 1261 **Y*R PYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*+C+MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISE DQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN Subject 7494 **Y*RHPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HCHMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 8519
Range 4: 7260 to 7454 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 60/65(92%) | 0/65(0%) | Plus/Plus |
Query 2 LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALG 196 LRIGPKLSP *RLAWALAWCCI *ESQICH QGTTYINFHMEGV G APKA*HIVVPNSHSQALG Subject 7260 LRIGPKLSPR*RLAWALAWCCIF*ESQICHIQGTTYINFHMEGVIGMAPKA*HIVVPNSHSQALG 7454
Range 5: 7532 to 8518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
730.5 bits(1588) | 0.0 | 326/329(99%) | 0/329(0%) | Minus/Minus |
Query 274 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 1260 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*S SDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*Q *Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP Subject 7532 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 8518
Range 6: 7259 to 7480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 67/74(91%) | 0/74(0%) | Minus/Minus |
Query 1 HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR 222 HKILRLTK+PRAWE*LFGTTICYAFGA+P+TPSMWKLMYVVP*+WQI*LS*+MQHQANA ANRQ GDSFGPIRR Subject 7259 HKILRLTKEPRAWE*LFGTTICYAFGAIPITPSMWKLMYVVP*IWQI*LS*KMQHQANAHANRQRGDSFGPIRR 7480
Range 7: 7261 to 8478 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
843.3 bits(1834) | 0.0 | 390/406(96%) | 0/406(0%) | Plus/Plus |
Query 3 CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAPI 1220 CELGQNYHP+DDW GHWLGAAF KKVKFAI RGQHTSISTWRAL G HQKHNILWSQTVIPKLWA WSV*EFCAFNNCNSING+HICTICLEFWFL*ALQLQP*SLHMSTAIMV IMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC EV*RL*GLAILVKKLIIIV IVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFL KGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALM VALKDQP*LE+VPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARL QRVALRELQPKLRWSLILPLLRSRCSDKLWLKESG PI Subject 7261 CELGQNYHPVDDWRGHWLGAAFSKKVKFAIFRGQHTSISTWRAL*GWHQKHNILWSQTVIPKLWALWSV*EFCAFNNCNSINGIHICTICLEFWFL*ALQLQP*SLHMSTAIMVIIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKCWEV*RL*GLAILVKKLIIIVNIVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFLPKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMSVALKDQP*LEKVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLNQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGVPI 8478
Range 8: 8023 to 8517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
375.4 bits(813) | 0.0 | 160/165(97%) | 0/165(0%) | Minus/Minus |
Query 765 **EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLEST 1259 **EHQQFRH*SLQDW+SAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPL+QARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRD FQSRLIFESY+HQSNGVQYLSQR*TDR LICQTHRMLEST Subject 8023 **EHQQFRH*SLQDWNSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLVQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDFFQSRLIFESYRHQSNGVQYLSQR*TDRSLICQTHRMLEST 8517
Range 9: 7261 to 7662 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 131/134(98%) | 0/134(0%) | Minus/Minus |
Query 3 GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA 404 GHNSQLILTPL*PL*DNHD HHYCCRHVQGLGLQLQRLQEPEFQTDSTYM+AVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMP PIVNGVIVLAQFA Subject 7261 GHNSQLILTPL*PL*DNHDYHHYCCRHVQGLGLQLQRLQEPEFQTDSTYMDAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPTPIVNGVIVLAQFA 7662
Range 10: 7723 to 7992 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 87/90(97%) | 0/90(0%) | Minus/Minus |
Query 465 EIAQQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG* 734 EIAQQTRASTPPACPQFLKEHFQ*PSSF QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPY+N NNDNQFLHQYG* Subject 7723 EIAQQTRASTPPACPQFLKEHFQ*PSSFWQECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYDNVNNDNQFLHQYG* 7992
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9
Range 1: 7260 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
912.0 bits(1984) | 0.0 | 377/420(90%) | 0/420(0%) | Minus/Minus |
Query 2 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ 1261 +DKSTSSSATN SKIGAPLSFSHSLSEHLDLKRG+ISDHLSFGWSSLNATL FKRALICD+KEEVKGCKL IFIKS LGPISGWNPRLQMD+PHDFCIVHAKSAQG HFPYYS NFR IQVTEGTLSNQG*SLRATN+RAMACNIY NVKLI L*Y RLTECSNQLIYCTFIH+I R*HNR +LQHLPHVHS *KSIFN+PLPFSK+ TK RRLVRTFRLLLSSCQLQRFQSG KSFI*LTWQPSWWA H+T+LTMIINFFTNMANP*SLQTS*HFLNC*SK LTWATI N*Y*LPCSPYETT+ +TIIAVDMCKD*GCN SAYKNQNSKQIVHIWRPLIL QLLK QNSQTDQKAQSLG TVWDHNMLCFWCRP N LHVEIDVCCPLS ANLTFLGNAAPSQCPS SSM * FWPNSQ Subject 7260 VDKSTSSSATNFSKIGAPLSFSHSLSEHLDLKRGDISDHLSFGWSSLNATLWFKRALICDAKEEVKGCKLLIFIKSFLGPISGWNPRLQMDVPHDFCIVHAKSAQGGHFPYYSGNFRSIQVTEGTLSNQG*SLRATNVRAMACNIYCNVKLITL*YVRLTECSNQLIYCTFIHDIWR*HNRFMLQHLPHVHSL*KSIFNNPLPFSKDTTKGRRLVRTFRLLLSSCQLQRFQSGFKSFI*LTWQPSWWACHLTMLTMIINFFTNMANP*SLQTS*HFLNC*SKCLTWATIFN*Y*LPCSPYETTLTITIIAVDMCKD*GCNYSAYKNQNSKQIVHIWRPLILSQLLKVQNSQTDQKAQSLGKTVWDHNMLCFWCRPYNVLHVEIDVCCPLSTANLTFLGNAAPSQCPSLSSME*QFWPNSQ 8519
Range 2: 7494 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
772.7 bits(1680) | 0.0 | 332/342(97%) | 0/342(0%) | Plus/Plus |
Query 236 **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 1261 **Y*RPPYMYYLFGILVLVGA IATLILAHVDSNNGD+ GCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*+C MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPP LGG+LAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGES ISE DQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN Subject 7494 **Y*RPPYMYYLFGILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HC*MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPALGGVLAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESDISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 8519
Range 3: 7260 to 7457 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 58/66(88%) | 0/66(0%) | Plus/Plus |
Query 2 LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF 199 LRIGPKL H*R AWALAWCCIS*ESQIC TQGTTYINFHME V GTAPKA*HIVVP+S SQALGF Subject 7260 LRIGPKLLLH*R*AWALAWCCIS*ESQICRTQGTTYINFHMEDVIGTAPKA*HIVVPDSLSQALGF 7457
Range 4: 7532 to 8518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
709.9 bits(1543) | 0.0 | 316/329(96%) | 0/329(0%) | Minus/Minus |
Query 274 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 1260 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*S SDM DSPNARINSSIAPSS+T GDSTTDSCFNTSRMSTVFERAFS+TLFLLAR PPR GGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*Q *Q**SISSPIWLTPKAFKPP+TSLTVEASASLGPQFSINIDSPVALMRQP LSPLLLSTCARIRVAI APTRTRIP Subject 7532 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMSDSPNARINSSIAPSSMTFGDSTTDSCFNTSRMSTVFERAFSITLFLLARTPPRAGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQPLLSPLLLSTCARIRVAITAPTRTRIP 8518
Range 5: 7259 to 7477 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 65/73(89%) | 0/73(0%) | Minus/Minus |
Query 1 KILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR 219 KILRLTKKPRAWE L GTTICYAFGAVP+T SMWKLMYVVP*V QI*LS*EMQHQANAQA RQW +SFGPIRR Subject 7259 KILRLTKKPRAWERLSGTTICYAFGAVPITSSMWKLMYVVP*VRQI*LS*EMQHQANAQAYRQWSNSFGPIRR 7477
Range 6: 7259 to 8518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
834.1 bits(1814) | 0.0 | 382/420(91%) | 0/420(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ 1260 PANWAKT+TPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGP+QSFPSSGLFGQSENF PLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W* LSHKGYRGVNIN*+LWPK*G CFNS*GS RRFEGFRG*PYW*RN*LSLL LL G+PTRKVAR*VK*SF* QTEIFGAGKSSKAA*RF*PTSC WW C*KEEG+*KCSFK+CGHAGGVEA +CCAIS C+G*RCNR*VDSSIR*V HIR S+*RC+RYCTPLL* W*LSKINLDWKESLL*PE*+*NC NNKGSD+PAQILHVLCKNRVE+PSGDGDSTR*LGQE I**K*+VCSL*LLPW HR*ERA*+KGWR*ESSNQS*DGR*Y LF*GQGAQTNYG*RKAELQSWR+*WRNCWCSYQ Subject 7259 PANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W***GLSHKGYRGVNIN*KLWPK*GTCFNS*GSVRRFEGFRG*PYW*RN*LSLLTLLDGKPTRKVAR*VK*SF*SQTEIFGAGKSSKAA*RF*PTSCPWWCPC*KEEGY*KCSFKDCGHAGGVEA*ICCAISKCHG*RCNR*VDSSIR*V*HIRE*SI*RCNRYCTPLL*RW*LSKINLDWKESLL*PE*I*NCRNNKGSDHPAQILHVLCKNRVEHPSGDGDSTR*LGQERI**K*EVCSL*LLPWRHR*ERA*TKGWR*ESSNQS*DGR*YRLF*GQGAQTNYG*RKAELQSWRN*WRNCWCSYQ 8518
Range 7: 7261 to 8478 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
784.6 bits(1706) | 0.0 | 363/406(89%) | 0/406(0%) | Plus/Plus |
Query 3 CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAPI 1220 CELGQN + IDD LGHWLGAAFPKKVKFA+LRGQHTSISTWR L GRHQKHNILWSQTV PKLWAFWSV*EFC FNNC+SINGLHICTICLEFWFL*AL LQP*SLHMSTAIMV + VVS*GLQGSQY*L+IVAQVR LLQQLRKC*EV*RL*GLAILVKKLIIIV IV W+AHQEGCQVSQMKLL+PD*NLWSWQELKSSLKVLTNLL LV LLKGRG LKMLFQ+LWTCGRC*S +LLCYL M WMKVQ*MS*FEHSVSL YQR I+LTL+*ILHAIAL LVALKDQP*LERVPSVT*I LKL E**GK* PCADFACTMQKSCG SIWRRGFHPLIGPR+DLMKM+SLQPLTSSL SQMRARL QRVALRELQPKLRWSLI PLLRSRCSDKLWLKESGAPI Subject 7261 CELGQNCYSIDDRLGHWLGAAFPKKVKFAVLRGQHTSISTWRTL*GRHQKHNILWSQTVFPKLWAFWSV*EFCTFNNCDSINGLHICTICLEFWFL*AL*LQP*SLHMSTAIMVIVRVVS*GLQGSQY*LKIVAQVRHLLQQLRKC*EV*RL*GLAILVKKLIIIVNIVRWQAHQEGCQVSQMKLLKPD*NLWSWQELKSSLKVLTNLLPLVVSLLKGRGLLKMLFQRLWTCGRC*SMNLLCYLQMSWMKVQ*MS*FEHSVSLTYQRVINLTLQ*ILHAIALTLVALKDQP*LERVPSVT*IDLKLPE**GK*PPCADFACTMQKSCGTSIWRRGFHPLIGPRKDLMKMRSLQPLTSSLASQMRARLNQRVALRELQPKLRWSLISPLLRSRCSDKLWLKESGAPI 8478
Range 8: 7723 to 8517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
519.3 bits(1127) | 0.0 | 239/265(90%) | 0/265(0%) | Minus/Minus |
Query 465 **EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLESTXXXXXXXXX*EIAQQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG* 1259 **EHQQFRH* LQDWSSAFLQP*FV*AP*PQKR+Y*RPSQLWLELS*RHPL+QARSHL* QGRSQRLQT HFH*I SWPN*RVESPSPDG STRFLHSTCKICAG SLPLLF+QFQ YSGHRRDSFQSRLIFESYQ QSNGVQYL QR* D LICQTHRMLESTHLLHLHP*H EIAQQ ASTPPACPQ LKEHFQ*PSSF*Q HQ QEVG*NLQAAFELLPAPKISVW QKLHLTHLATFLVG P NN NNDNQFLHQYG* Subject 7723 **EHQQFRH*FLQDWSSAFLQP*FV*AP*PQKRRY*RPSQLWLELS*RHPLVQARSHL*RQGRSQRLQTSHFH*ILSWPN*RVESPSPDGCSTRFLHSTCKICAGWSLPLLFRQFQIYSGHRRDSFQSRLIFESYQRQSNGVQYLLQR*IDHSLICQTHRMLESTHLLHLHP*HLEIAQQIHASTPPACPQSLKEHFQ*PSSF*QGHHQGQEVG*NLQAAFELLPAPKISVWLQKLHLTHLATFLVGLPSNNVNNDNQFLHQYG* 8517
Range 9: 7261 to 7662 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 127/134(95%) | 0/134(0%) | Minus/Minus |
Query 3 GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA 404 GHN QLILTPL*PL*DN HHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKG KFSD*PKSPELG DCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGV VLAQFA Subject 7261 GHNFQLILTPL*PL*DNPYYHHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKGAKFSD*PKSPELGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFA 7662
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 13
Range 1: 7497 to 8501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
705.3 bits(1533) | 0.0 | 305/335(91%) | 0/335(0%) | Plus/Plus |
Query 257 YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 1261 YMYYLFGILVLVG IA ILAHVDS++G + GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVSH EEIDYHC* MAS GRLPGESNEAFEARLKSLELARAQKQPEGSN PP L GILAKRKRVIENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI+EG QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSE+AGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGG+KRAPTKAEMVANIASFEV+VLRQ MAEGKRSSNLGEISGGTAGALIN Subject 7497 YMYYLFGILVLVGIVIAIQILAHVDSSSGTHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHKVEEIDYHC*IG*MASQIGRLPGESNEAFEARLKSLELARAQKQPEGSNTPPTLSGILAKRKRVIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAEGVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEVAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQVLRQAMAEGKRSSNLGEISGGTAGALIN 8501
Range 2: 7242 to 7424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 38/61(62%) | 0/61(0%) | Plus/Plus |
Query 2 LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHS 184 L IG + PH* LA AL CCIS* SQICH Q TT+INF GVTGTA K * V P+S S Subject 7242 LLIGQRP*PH*LLA*ALDLCCIS*GSQICHIQETTFINFLTGGVTGTAQKV*LTVAPSSPS 7424
Range 3: 7514 to 8500 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
577.0 bits(1253) | 0.0 | 266/329(81%) | 0/329(0%) | Minus/Minus |
Query 274 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 1260 L+ APAVPPLISPRLELR PSAI CLST TSKEAILATISA VGALL PPF SSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPA SDLFRSQ GL PI+VDL ELPTSEQ RAISIAT N +PS MPDSPNARI+SSIAPSS+T G+ TT SCF TS MSTVFE AFS+TL LARMP R GG LEPSGCF*ALA+S DFS ASKASFDSPG+LP LAI *Q**SISS +WLTPKAFKPP+TS TV+A ASLGPQFSI IDSPVAL++QP PLLLST ARI +AI PT+TRIP Subject 7514 LMSAPAVPPLISPRLELRLPSAIACLST*TSKEAILATISAFVGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPATSDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTPSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSITLLRLARMPLRVGGVLEPSGCF*ALANSSDFSRASKASFDSPGSLPI*LAIQPI*Q**SISSTLWLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALIKQPW*VPLLLST*ARIWMAITIPTKTRIP 8500
Range 4: 7241 to 7462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 44/74(59%) | 0/74(0%) | Minus/Minus |
Query 1 HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR 222 HKILRL K R E L G T+ Y F AVPVTP + KLM VV *+WQI*L EMQH++NA AN WG PI R Subject 7241 HKILRLAKYSRTGEGLLGATVSYTFCAVPVTPPVRKLMNVVS*IWQI*LPQEMQHKSNA*ANS*WGYGLCPISR 7462
Range 5: 7979 to 8500 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 116/174(67%) | 0/174(0%) | Plus/Plus |
Query 739 CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ 1260 C+G*RCNR DS I *+WH R++* RY T LL*CW*L ++N D +ES+L*P+ + + W+ KG D+ ILHVLCKNRVE+PSGDGDSTR*LGQEGI**K*KVCSL* SHR*E A*+KGW *+SSN+S*DG *Y LF*G AQT+YG*R+AE Q WRD*W N WC++Q Subject 7979 CHG*RCNRRADSCIW*IWHS*RRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRSSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**K*KVCSL*FFLGSHR*ECA*AKGWN*KSSNES*DGC*YRLF*GSSAQTSYG*RQAEFQPWRD*WWNGWCTHQ 8500
Range 6: 7241 to 7525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 87/95(92%) | 0/95(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSG 285 PANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSG+FGQSENFVPL++VI L A I+VLSVWNSG Subject 7241 PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG 7525
Range 7: 7571 to 7957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 64/129(50%) | 0/129(0%) | Plus/Plus |
Query 331 QQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEAR 717 QQ*W L ++ + +N++*+L PK* +C + G RFEGFRG*P *RN*LSLL L G+ + +R*+K* F* +I G SSKAA RF* T+ S WHSC +E + +C+FK+ GH GG E R Subject 7571 QQ*WHSPRLLYQSHWRINLD*KLRPK*SSCIHCKGGVGRFEGFRG*P*G*RN*LSLLNWLNGKSNWETSR*IK*GF*SPAKIAGVS*SSKAAGRF*YTTYSQWHSCQTQESYRECTFKDGGHEGGFETR 7957
Range 8: 7242 to 8501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
539.9 bits(1172) | 0.0 | 248/420(59%) | 0/420(0%) | Minus/Minus |
Query 2 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ 1261 +D+ TS S TNLSK+G PL+FSHSLSEHL+LKRG+IS+HLSF WSS N+TL KR LICDS+E++KGCKLFIFIKSLLGPISGWNPRLQMD+PHDFCIVHAKS H PY S F + VT+ TL+ QG* L ATNIRA+ C IY ++KL A YAR T+C+NQL+YCTFIH+I H+R V Q+LPHVH *K I + L F KNAT++R +RTFRLLLSS LQRF G KS I* T + H LTMIINFF MANP*SLQTS H L K TWA I N * + T++ AV M KD N ++Y++QNSKQI+H+ L Q L+AQNSQT Q + G T W H+ L F CRPCNA EID CC L+MA+LT GNAA QC SQ MG PN Q Subject 7242 VDECTSRSTTNLSKVGTPLAFSHSLSEHLNLKRGDISNHLSFRWSSFNSTLWLKRTLICDSQEKIKGCKLFIFIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNSLAFGKNATESRWCIRTFRLLLSSS*LQRF*PGFKSLI*FTGKSPNLTCHSANLTMIINFFNLMANP*SLQTSQHLLYSGCKSFTWAAIFNQD*FASGSDKATLVSATTAVYMSKDLDGNYNSYQDQNSKQIIHV*MQSDL*QALRAQNSQTGQIFPNWGRTAWGHSKLYFLCRPCNAPREEIDECCLLNMADLTSSGNAAQVQCLSQQLMGLWSLPN*Q 8501
Range 9: 8008 to 8490 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 105/161(65%) | 0/161(0%) | Minus/Minus |
Query 768 HQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLES 1250 HQ F H*SLQ W+SA LQP* V*A PQKR+Y*+PSQL LEL * HPL QA SHL*L ++QRLQTFHFH*IPSWPN*RVESPSPDG STRFLHSTCKI S PL Q GH+ DS S L SYQHQS+ V YL R +CQ H+M ES Subject 8008 HQPFHH*SLQGWNSACLQP*LV*ALEPQKRRY*QPSQLSLELF*FHPLAQAHSHL*LPRKNQRLQTFHFH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLLLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARLQLCQIHQMHES 8490
Range 10: 7243 to 7581 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.4 bits(383) | 0.0 | 82/113(73%) | 0/113(0%) | Minus/Minus |
Query 3 HYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA 341 HYCC H QG G QLQ L PEFQTD+T + A+ +T IKGTKFSD P PELG DCLGPQ V+L VPSL*RPP GN* MLSPEYG+FDFLRKCST PMPKP VNGV+V AQ A Subject 7243 HYCCLHEQGFGWQLQFLPRPEFQTDNTCINAIRPMTSIKGTKFSDWPNIPELGKDCLGPQ*VILFVPSL*RPP*GN**MLSPEYGRFDFLRKCSTSPMPKPTVNGVMVFAQLA 7581
Range 11: 7705 to 7956 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 44/84(52%) | 0/84(0%) | Minus/Minus |
Query 465 RASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG* 716 R S PP+CP LK H * S QECH E V *NL AAFEL P I QK HL H P++ FNNDNQFL YG* Subject 7705 RVSKPPSCPPSLKVHSL*LSCVWQECH*E*VVY*NLPAAFEL*LTPAILAGLQKPHLIHREVSQFDLPFSQFNNDNQFLQPYG* 7956
Range 12: 7909 to 8457 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.5 bits(525) | 0.0 | 120/183(66%) | 0/183(0%) | Plus/Plus |
Query 669 KMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAP 1217 +M FQ+ WT GR *+T + M WMKVQ* S*F H V+LA +A +L *I H ALMLVA + QP* RV VT* K L *G+* DFACTMQKSCG SIWRRGFHPLIGPRRDLMKMKSLQPL S ESQMR RL QRV L+ELQ KLRW LI PLLR +CSDKLWLK SG P Subject 7909 RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMKMKSLQPLIFSWESQMRVRLSQRVELKELQRKLRWLLISPLLRFKCSDKLWLKASGVP 8457
Range 13: 7243 to 7851 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 106/203(52%) | 0/203(0%) | Plus/Plus |
Query 3 CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLK 611 C LG++++PI+ WL HW AAFP++VK AI R QH+SIS+ ALQGRH+K+N+LW Q V+P+ W V*EFCA N C+ + ++ C ICLEFW * L L SL M TA++ V +Q *L+I AQV+ L R+C EV*RL*GLAI +KKLIIIVK+ W+ V+QM+LL+P *N WS ELKSS K Subject 7243 C*LGKDHNPINCWLRHWTCAAFPEEVKSAIFRRQHSSISSRGALQGRHKKYNLLWPQAVLPQFGNIWPV*EFCALNACHRSDCIYTCIICLEFWSW*EL*LPSKSLLM*TAVVALTKVALSEPLANQS*LKIAAQVKLLHPL*RRCWEV*RL*GLAIRLKKLIIIVKLAEWQVKLGDFPVNQMRLLKPG*NRWS*LELKSSRK 7851
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 12
Range 1: 7515 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
704.4 bits(1531) | 0.0 | 302/335(90%) | 0/335(0%) | Plus/Plus |
Query 257 YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 1261 +M+YLFG+LVL+G AIA ILAHVD+++GDN GCLIRATGESILIENCGPSEALASTVKE+LGGLKALGVSH+ EE D+ C* MAS G+LPGESNEAFEARLKSLELARAQKQPEGSNQPP L GILAKRKRVIENALSKTVDMR+VLKHE+VVLSPNVMDEGAIDELIRAFGESGI+E QF+VAIDIARHCSDVGSSQRSTLIGKSPFC+LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN Subject 7515 FMHYLFGVLVLLGIAIAIQILAHVDNSSGDNQGCLIRATGESILIENCGPSEALASTVKEILGGLKALGVSHLIEETDHSC*TGVMASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNQPPTLSGILAKRKRVIENALSKTVDMRDVLKHETVVLSPNVMDEGAIDELIRAFGESGIAESAQFDVAIDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 8519
Range 2: 7266 to 7457 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 36/64(56%) | 0/64(0%) | Plus/Plus |
Query 8 IGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF 199 IGPKL PH +L W L C I *E QICH T YINF E VTGT +A* IVV + A GF Subject 7266 IGPKL*PHSQLVWVLV*CFIF*EGQICHILETIYINFLTEDVTGTVQRA*LIVVLSKPFLAPGF 7457
Range 3: 7532 to 8518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
606.8 bits(1318) | 0.0 | 276/329(84%) | 0/329(0%) | Minus/Minus |
Query 274 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 1260 LI APAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPF AQLAGGIPVSRW+FHTIFA*YMQNLRRVVTSLIIPAISDLF SQKGL PI+VDL ELPTSEQ RAISIAT N + S MPDSPNARINSSIAPSS+T G+STT SCF+TS +STVFE AFS+TLFLLARMP R GGWLEPSGCF*ALA+SKD SLASKASFDSPGN P LAI Q *S+SS WLTPKAF+PP+ SLTVEA ASLGPQFS++IDSPVAL++QP LSPLLLSTCARI +AIA P TR P Subject 7532 LISAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFFAQLAGGIPVSRWMFHTIFA*YMQNLRRVVTSLIIPAISDLFNSQKGLLPIRVDLWELPTSEQ*RAISIATSNCALSAMPDSPNARINSSIAPSSMTFGESTTVSCFSTSLISTVFESAFSITLFLLARMPLRVGGWLEPSGCF*ALANSKDLSLASKASFDSPGNFPI*LAITPVQQE*SVSSIRWLTPKAFRPPNISLTVEARASLGPQFSMSIDSPVALIKQPWLSPLLLSTCARIWMAIAIPNSTRTP 8518
Range 4: 7259 to 7480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 40/74(54%) | 0/74(0%) | Minus/Minus |
Query 1 HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR 222 +KI RL++ P A + L TTI YA VPVT S+ KLMY+V +WQI* S +M+H N Q N +WG SFGPI R Subject 7259 YKIFRLSENPGARKGLLRTTISYALCTVPVTSSVRKLMYIVSRIWQI*PSQKMKH*TNTQTNCEWGYSFGPIYR 7480
Range 5: 7259 to 8518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
539.0 bits(1170) | 0.0 | 269/420(64%) | 0/420(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ 1260 P NWAKTITPLTIGLGIGLV HFLR+SNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQ+FPSSG+FGQSENFVPL++VI L A I+ LSVW+SG+ R CNC+PNPCTCRQQ*W*Q L ++ Y + +*+LW K* C S + +GFRG P RN* LL YG+ KV R +K*SF* T+IFG G SKAA RF P S HS KEEG+*KC+ KN + EA C + C+G N *+D I +WH ++* C+RYC LL CW K+N DW + L* E*V*N WNNKGS A ILHVL KN VE+PSGDGD+T LG+E +**K*KVCSL*LLPWSHR*E A*+KG R*ESSNQS*DGR*YCLF* Q Q NYG*RKAE Q WR+*W N W +YQ Subject 7259 PVNWAKTITPLTIGLGIGLVFHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQAFPSSGIFGQSENFVPLMLVITLIAFIHALSVWSSGTVRNCNCHPNPCTCRQQ*W*QPGLLNQSYWRIYTH*KLWAK*SPCLYSQRNIGWSKGFRGEPSNRRN*SFLLNWSYGKSNWKVTRGIK*SF*S*TQIFGIG*GSKAARRFQPASNP*RHSRQKEEGN*KCTLKNS*YERRAEA*DSCTLPECHGRGGN**IDPRIWRIWHS*ECAI*CCNRYCPSLLRCWKFPKVNPDW*KPFL*VE*V*NSWNNKGSHNSA*ILHVLRKNCVEHPSGDGDTTSQLGKERV**K*KVCSL*LLPWSHR*ECA*AKGRR*ESSNQS*DGR*YCLF*SQSTQANYG*RKAEFQPWRN*WWNGWSTYQ 8518
Range 6: 7518 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
433.6 bits(940) | 0.0 | 193/334(58%) | 0/334(0%) | Minus/Minus |
Query 260 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVH 1261 +DK +S S TN SK+G PLSFSHSL E+ D KRGNISDHLSFGWSSLNA L KR LICDSKEEVKGCKLFIFIK L P+ W PRLQMD+PH+FC+VHAKS Q FPYYSS FRPIQ+T+ +NQG* L +NI AM NIY N+KL L YAR ++C++Q I C +H+IR +N L+LQH+ H++ F*+ IFN PLPF +NA K RLV TF LLLS Q QRF+S KSFI* S H + T +I+FF MA+P*SL T+ +F +C K TW TI N Y S T++VT V MCKD NC++ + QNSKQI+H Subject 7518 VDKCSSRSTTNFSKVGTPLSFSHSLPEYFDFKRGNISDHLSFGWSSLNAALWLKRTLICDSKEEVKGCKLFIFIKPFLCPVGWWYPRLQMDVPHNFCVVHAKSTQSCDFPYYSSYFRPIQLTKRAFTNQG*PLGTSNI*AMTGNIYCNIKLRTLSYARFSKCADQFINCPLVHDIRGEYNCLMLQHVSHINCF*ECIFNYPLPFGENAAKGWRLVGTFWLLLSPSQFQRFESSFKSFI*FPG*LSNLTCHNSSSTRMISFFD*MAHP*SL*TTQYFFDCRGKGFTWPTIFNEYRFSSSSD*ATLVVTTTVVYMCKDLDGNCNS*QYQNSKQIMH 8519
Range 7: 7260 to 7493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 40/78(51%) | 0/78(0%) | Minus/Minus |
Query 2 QLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ 235 Q LK QN T +K++S DHN LC RPCN L EIDV C +MANLTF N Q P Q +G *FWPN Q Subject 7260 QALKVQNFPTVRKSRS*ERLA*DHNKLCSLYRPCNVLREEIDVYCLQNMANLTFSENETLDQYPDQL*VGL*FWPNLQ 7493
Range 8: 8035 to 8505 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 104/157(66%) | 0/157(0%) | Minus/Minus |
Query 777 QQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRM 1247 Q F H* LQ W+SAFLQP*F * * QKRQY*RPSQLWLELS*R PL QA SHL*LQGRSQRLQTFHFH* S P+ V SPSPDG ST+FL STCKI A LPLLFQ FQTYS H++ +QS L F ++QH SN QYL Q +CQ +M Subject 8035 QPFHH*FLQGWNSAFLQP*FA*VL*LQKRQY*RPSQLWLELS*RRPLAQAHSHL*LQGRSQRLQTFHFH*TLSLPSWLVVSPSPDGCSTQFLRSTCKIYAEL*LPLLFQLFQTYSTHKKGFYQSGLTFGNFQHLSNDGQYLLQHQIAHSQLCQILQM 8505
Range 9: 7264 to 7614 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 84/117(72%) | 0/117(0%) | Minus/Minus |
Query 6 NHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQF 356 N CHHYCC HVQG G QLQ L PE QTD+ M A+ +T IKGTKFSD PK PELG CLGPQ VML VPSL*RPP GN*C+LSPEYGKFD LRK +T+P+P+PIV+GVIVLAQF Subject 7264 NPGCHHYCCLHVQGFGWQLQFLTVPELQTDNA*MNAIRVMTSIKGTKFSDCPKIPELGKACLGPQ*VMLFVPSL*RPP*GN*CILSPEYGKFDLLRK*NTRPIPRPIVSGVIVLAQF 7614
Range 10: 7726 to 7983 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 41/86(48%) | 0/86(0%) | Minus/Minus |
Query 468 QQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG 725 Q + AS + FL+ HFQ PSSF +EC E G NL AAFE P PKI V QKLHL TF P FN ++QFL G Subject 7726 QLSHASARLSYQLFLRVHFQLPSSFWRECR*GLEAGWNLLAAFEP*PIPKI*V*LQKLHLIPRVTFQFDLP*LQFNKNDQFLRLDG 7983
Range 11: 7771 to 8475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 142/235(60%) | 0/235(0%) | Plus/Plus |
Query 513 WRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAP 1217 W+ E +QMKLL+ D NLW+W LKSS KV T+L L AF KGRG LKM QK C*S L M W + Q M+* H +LA R +L L+*IL IA ML K QP*L + V+*IGLK LE**GK C DFACT QK CG SIWRRG+H G R+ LMKMKSLQPLTSSLESQMR RL QR ALRELQPKLRWSLILPLL+S+ S KLWLKESG P Subject 7771 WQVKLESYPGNQMKLLKLDSNLWNWLGLKSSQKVPTSLQPLAAFSPKGRG*LKMHSQKQLI*ETC*SMRQLYSPRMSWTRGQLMN*SAHLENLA*LRVRNLMLQ*ILPVIAQMLEVPKGQP*LVKALFVS*IGLK*LE**GKSQLCVDFACTTQKLCGTSIWRRGYHQPTGQRKGLMKMKSLQPLTSSLESQMRVRLSQRAALRELQPKLRWSLILPLLKSKYSGKLWLKESGVP 8475
Range 12: 7261 to 7722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 77/154(50%) | 0/154(0%) | Plus/Plus |
Query 3 CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*G 464 C+LGQNY+P +W G+W +F +KVKFAI Q+TSIS+ R LQGR+++HN+LWS + L F +V +FC FN C+ N +H C ICLEFW+ * LQL SLHM T ++VT V L + Y L+IV QV+ L Q +K V*RL*G Subject 7261 CKLGQNYNPTHNWSGYWSSVSFSEKVKFAIFWRQYTSISSRRTLQGRYKEHNLLWS*ASLS*LRDFRTVGKFCTFNACHHSNRIHSCIICLEFWYC*ELQLPSKSLHM*TTVVVTTRVA*SELLENLYSLKIVGQVKPLPLQSKKYWVV*RL*G 7722
Nucleotide Sequence (151 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
114.2 | 444.1 | 25% | 9.63e-25 | 83% | AB277783.1 | |
114.2 | 348.1 | 46% | 9.63e-25 | 77% | AY368590.1 | |
113.3 | 455.6 | 25% | 1.818e-24 | 86% | KX274275.1 | |
106.5 | 165.7 | 32% | 2.131e-22 | 53% | AY881626.1 | |
106.5 | 163.9 | 32% | 2.131e-22 | 51% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 7
Range 1: 827 to 976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 49/50(98%) | 0/50(0%) | Minus/Plus |
Query 1 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 150 IIMNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIRELVTEDESF Subject 827 IIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 976
Range 2: 827 to 976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 43/50(86%) | 0/50(0%) | Plus/Minus |
Query 1 KTLVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHNN 150 +TLVLSDKFSY*T FTT+RN +N+NWKSEHAIN+HKLKRRQSFN*VIHNN Subject 827 ETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNN 976
Range 3: 882 to 974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 26/31(84%) | 0/31(0%) | Plus/Minus |
Query 3 NSRPQ*QVLLLNYFYHFQEHYERQLEI*ARY 95 NSRPQ*QVLLLN FYH+QE E+QLEI*ARY Subject 882 NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARY 974
Range 4: 826 to 861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 12/12(100%) | 0/12(0%) | Plus/Minus |
Query 116 VDKALTKLFIII 151 VDKALTKLFIII Subject 826 VDKALTKLFIII 861
Range 5: 826 to 897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 23/24(96%) | 0/24(0%) | Minus/Plus |
Query 80 DYYE*LS*SFVYV*VCGSL*RAQI 151 DYYE*LS*SFVYV*VCG L*RAQI Subject 826 DYYE*LS*SFVYV*VCGYL*RAQI 897
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 5
Range 1: 6571 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 49/50(98%) | 0/50(0%) | Minus/Plus |
Query 1 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 150 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDESF Subject 6571 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF 6720
Range 2: 6571 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 40/50(80%) | 0/50(0%) | Plus/Minus |
Query 1 KTLVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHNN 150 +TLV S++ SY TTFTT+RN MN+NWKSEHAIN+HKLKRRQSFN*VIHNN Subject 6571 ETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN 6720
Range 3: 6626 to 6718 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 24/31(77%) | 0/31(0%) | Plus/Minus |
Query 3 NSRPQ*QVLLLNYFYHFQEHYERQLEI*ARY 95 NSR Q* LL NYFYH+QE YE+QLEI*ARY Subject 6626 NSRLQ**ALLSNYFYHYQERYEQQLEI*ARY 6718
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7
Range 1: 6571 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 49/50(98%) | 0/50(0%) | Minus/Plus |
Query 1 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 150 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDE+F Subject 6571 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENF 6720
Range 2: 6571 to 6714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 44/48(92%) | 0/48(0%) | Plus/Minus |
Query 7 LVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHNN 150 LVLSDKFSY*TTFTT+RN MN+NWKSEHAIN+HKLKRRQSFN*VIHNN Subject 6571 LVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN 6714
Range 3: 6626 to 6718 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 28/31(90%) | 0/31(0%) | Plus/Minus |
Query 3 NSRPQ*QVLLLNYFYHFQEHYERQLEI*ARY 95 NSRPQ*QVLLLNYFYH+QE YE+QLEI*ARY Subject 6626 NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY 6718
Range 4: 6570 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 12/12(100%) | 0/12(0%) | Plus/Minus |
Query 116 VDKALTKLFIII 151 VDKALTKLFIII Subject 6570 VDKALTKLFIII 6605
Range 5: 6570 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 23/24(96%) | 0/24(0%) | Minus/Plus |
Query 80 DYYE*LS*SFVYV*VCGSL*RAQI 151 DYYE*LS*SFVYV*VCG L*RAQI Subject 6570 DYYE*LS*SFVYV*VCGCL*RAQI 6641
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 2
Range 1: 6574 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 43/49(88%) | 0/49(0%) | Minus/Plus |
Query 1 IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 147 IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF Subject 6574 IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF 6720
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 2
Range 1: 6574 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 43/49(88%) | 0/49(0%) | Minus/Plus |
Query 1 IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 147 IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF Subject 6574 IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF 6720
Nucleotide Sequence (199 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
158.2 | 814.5 | 24% | 9.649e-38 | 89% | AB277783.1 | |
158.2 | 815.0 | 24% | 9.649e-38 | 91% | KX274275.1 | |
154.1 | 763.2 | 24% | 1.682e-36 | 83% | AY368590.1 | |
153.2 | 412.2 | 37% | 3.175e-36 | 50% | AB277787.1 | |
153.2 | 413.6 | 37% | 3.175e-36 | 50% | KX274277.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8
Range 1: 1265 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 64/66(97%) | 0/66(0%) | Minus/Plus |
Query 1 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 198 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDF LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA Subject 1265 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA 1462
Range 2: 1265 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN 198 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK EIGIMR *INCLLAKAN HTLNIQLKWR CN Subject 1265 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKANQHTLNIQLKWRACN 1462
Range 3: 1264 to 1461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(309) | 0.0 | 64/66(97%) | 0/66(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 199 AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG LKSELCAAAKSTASLPKQISTPSTSNSNGEPVI Subject 1264 AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 1461
Range 4: 1266 to 1460 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 59/65(91%) | 0/65(0%) | Plus/Minus |
Query 3 QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL* 197 QQCRTSAYHR SDPLISIR*QHQM*HLVPHKE *NRNYA+ LNQLPPCQSK AHPQHPTQMA+L* Subject 1266 QQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHPTQMASL* 1460
Range 5: 1359 to 1460 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/34(97%) | 0/34(0%) | Minus/Plus |
Query 3 SIFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL 104 S FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL Subject 1359 SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL 1460
Range 6: 1264 to 1317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 16/18(89%) | 0/18(0%) | Minus/Plus |
Query 146 DYRFAI*VGC*GCANLLW 199 DYR AI*VGC*GCA+LLW Subject 1264 DYRLAI*VGC*GCADLLW 1317
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8
Range 1: 7009 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 64/66(97%) | 0/66(0%) | Minus/Plus |
Query 1 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 198 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDF LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA Subject 7009 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA 7206
Range 2: 7008 to 7205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(309) | 0.0 | 64/66(97%) | 0/66(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 199 AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG LKSELCAAAKSTASLPKQISTPSTSNSNGEPVI Subject 7008 AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 7205
Range 3: 7009 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN 198 CSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRK EI IMR *INCLLAKAN*HTLNIQLKWRTCN Subject 7009 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQLKWRTCN 7206
Range 4: 7010 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 59/65(91%) | 0/65(0%) | Plus/Minus |
Query 3 QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL* 197 QQCRTSAYHR SDPLISIR*QHQM*HL PHKE *N+NYA+ LNQLPPCQSKLAHPQHPTQMANL* Subject 7010 QQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHPTQMANL* 7204
Range 5: 7103 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 32/34(94%) | 0/34(0%) | Minus/Plus |
Query 3 SIFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL 104 S FLVR EVLHLMLLPY*NQGIRPPMISTGSTLL Subject 7103 SNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLL 7204
Range 6: 7008 to 7061 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 18/18(100%) | 0/18(0%) | Minus/Plus |
Query 146 DYRFAI*VGC*GCANLLW 199 DYRFAI*VGC*GCANLLW Subject 7008 DYRFAI*VGC*GCANLLW 7061
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8
Range 1: 7009 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 62/66(94%) | 0/66(0%) | Minus/Plus |
Query 1 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 198 ITGSPFELDVEGVLICFGKEAV+LAAAHNSDF LPCEVRG TFDVVTLLKSRDPT DDKHWFYIAA Subject 7009 ITGSPFELDVEGVLICFGKEAVNLAAAHNSDFKLPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAA 7206
Range 2: 7008 to 7205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.6 bits(299) | 0.0 | 62/66(94%) | 0/66(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 199 AAM*NQCLSS VGSLDFNKVTTSNV PRTSQG LKSELCAAAK TASLPKQISTPSTSNSNGEPVI Subject 7008 AAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQGSLKSELCAAAKLTASLPKQISTPSTSNSNGEPVI 7205
Range 3: 7009 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 58/66(88%) | 0/66(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN 198 CSNVEPVLII GRI *FQ*GNNIKCSTSYLTRK EI IMR C +NCLLAKAN*HTLNIQLKW TCN Subject 7009 CSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRKFEI*IMRSCQVNCLLAKAN*HTLNIQLKW*TCN 7206
Range 4: 7010 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 54/65(83%) | 0/65(0%) | Plus/Minus |
Query 3 QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL* 197 QQCRTSAYH+ SD LISIR*QHQM*+LVPHKE *N NYA+L + LPPCQSKLAHPQHPTQM NL* Subject 7010 QQCRTSAYHQRSDLLISIR*QHQM*YLVPHKEV*NLNYAQLPS*LPPCQSKLAHPQHPTQMVNL* 7204
Range 5: 7103 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 31/34(91%) | 0/34(0%) | Minus/Plus |
Query 3 SIFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL 104 S FLVRYEVLHLMLLPY*NQ IRP MISTGSTLL Subject 7103 SNFLVRYEVLHLMLLPY*NQEIRPLMISTGSTLL 7204
Range 6: 7008 to 7061 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 17/18(94%) | 0/18(0%) | Minus/Plus |
Query 146 DYRFAI*VGC*GCANLLW 199 DYRF I*VGC*GCANLLW Subject 7008 DYRFTI*VGC*GCANLLW 7061
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 4
Range 1: 1265 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 59/66(89%) | 0/66(0%) | Minus/Plus |
Query 1 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 198 + GSPFELDVEGVLICFGKEAVDLA AHNSDF LPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA Subject 1265 VIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA 1462
Range 2: 1267 to 1461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.4 bits(270) | 0.0 | 53/65(82%) | 0/65(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPV 196 AA *NQCLSSGVGSLDFN VTTSNV PRTSQG LKSELCA A+STAS PKQ+ TPSTS+SNG+P+ Subject 1267 AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPI 1461
Range 3: 1265 to 1462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/66(50%) | 0/66(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN 198 C +VEP+LI +P Q* N+KC T +L ++E+GI+R C*+ LL+KAN +LNIQ KWR N Subject 1265 CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*VYGLLSKANEDSLNIQFKWRPYN 1462
Range 4: 1266 to 1451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 31/62(50%) | 0/62(0%) | Plus/Minus |
Query 12 RTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL* 197 RT+AY P SI Q QM + P + *+RN A+LL PP QSK PQHP QMA L* Subject 1266 RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLGLRPPFQSK*GLPQHPVQMATL* 1451
Grapevine rupestris stem pitting associated virus isolate SK30, complete genome
Sequence ID: KX274277.1 Length: 8724 Number of Matches: 4
Range 1: 7009 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 59/66(89%) | 0/66(0%) | Minus/Plus |
Query 1 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA 198 + GSPFELDVEGVLICFGKEAVDLA AHNSDF LPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA Subject 7009 VIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA 7206
Range 2: 7011 to 7205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.4 bits(270) | 0.0 | 53/65(82%) | 0/65(0%) | Plus/Minus |
Query 2 AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPV 196 AA *NQCLSSGVGSLDFN VTTSNV PRTSQG LKSELCA A+STAS PKQ+ TPSTS+SNG+P+ Subject 7011 AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPI 7205
Range 3: 7009 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 34/66(52%) | 0/66(0%) | Plus/Minus |
Query 1 CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN 198 C +VEP+LI +P Q* N+KC T +L ++E+GI+R C*I LL+KAN ++LNIQ KWR N Subject 7009 CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQFKWRPYN 7206
Range 4: 7010 to 7195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 31/62(50%) | 0/62(0%) | Plus/Minus |
Query 12 RTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL* 197 RT+AY P SI Q QM + P + *+RN A+LL+ PP QSK PQHP QMA L* Subject 7010 RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQMATL* 7195
Nucleotide Sequence (120 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
99.6 | 556.7 | 34% | 2.257e-20 | 97% | AB277783.1 | |
99.6 | 546.2 | 34% | 2.257e-20 | 95% | KX274275.1 | |
97.7 | 497.1 | 34% | 8.041e-20 | 85% | AY368590.1 | |
97.7 | 222.7 | 33% | 8.041e-20 | 55% | FR691076.1 | |
97.7 | 222.7 | 33% | 8.041e-20 | 57% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 1364 to 1483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 39/40(98%) | 0/40(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 120 LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL Subject 1364 LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL 1483
Range 2: 1364 to 1483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 40/40(100%) | 0/40(0%) | Minus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 120 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK Subject 1364 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 1483
Range 3: 1365 to 1481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 39/39(100%) | 0/39(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 118 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN Subject 1365 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 1481
Range 4: 1365 to 1481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 38/39(97%) | 0/39(0%) | Minus/Minus |
Query 2 ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE 118 ISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HLVPHKE Subject 1365 ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKE 1481
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 7108 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 39/40(98%) | 0/40(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 120 LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL Subject 7108 LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL 7227
Range 2: 7108 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 39/40(98%) | 0/40(0%) | Minus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 120 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRK Subject 7108 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRK 7227
Range 3: 7110 to 7226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 38/39(97%) | 0/39(0%) | Minus/Minus |
Query 3 NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 119 NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG Subject 7110 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQG 7226
Range 4: 7109 to 7225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 37/39(95%) | 0/39(0%) | Minus/Minus |
Query 2 ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE 118 ISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HL PHKE Subject 7109 ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKE 7225
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 7108 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 38/40(95%) | 0/40(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 120 LPCEVRG TFDVVTLLKSRDPT DDKHWFYIAATRHRKKL Subject 7108 LPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL 7227
Range 2: 7110 to 7226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/39(95%) | 0/39(0%) | Minus/Minus |
Query 3 NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 119 NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV PRTSQG Subject 7110 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQG 7226
Range 3: 7108 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 36/40(90%) | 0/40(0%) | Minus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 120 Q L MSCCSNVEPVLII GRI *FQ*GNNIKCSTSYLTRK Subject 7108 QLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRK 7227
Range 4: 7109 to 7225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 35/39(90%) | 0/39(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 118 FLVRYEVLHLMLLPY*NQ IRP MISTGSTLLQQDI R+ Subject 7109 FLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS 7225
Grapevine rupestris stem pitting associated virus complete genome, genomic RNA, isolate GRSPaV MG
Sequence ID: FR691076.1 Length: 8749 Number of Matches: 3
Range 1: 7108 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 37/40(92%) | 0/40(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 120 LPCEVRG+TF+VVTLLKSRDPTP+DKHWFYIAATRHRKKL Subject 7108 LPCEVRGSTFNVVTLLKSRDPTPEDKHWFYIAATRHRKKL 7227
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3
Range 1: 7108 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 37/40(92%) | 0/40(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 120 LPCEVRG+TF+VVTLLKSRDPTP+DKHWFYIAATRHRKKL Subject 7108 LPCEVRGSTFNVVTLLKSRDPTPEDKHWFYIAATRHRKKL 7227
Nucleotide Sequence (1029 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
813.9 | 4292.0 | 31% | 0 | 93% | KX274275.1 | |
807.5 | 4016.8 | 30% | 0 | 79% | AY368590.1 | |
777.7 | 3092.6 | 37% | 0 | 42% | KR528585.1 | |
771.8 | 2559.1 | 39% | 0 | 50% | KR054734.1 | |
766.3 | 2395.7 | 34% | 0 | 48% | KX274274.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9
Range 1: 3331 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
813.9 bits(1770) | 0.0 | 340/342(99%) | 0/342(0%) | Plus/Plus |
Query 2 DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 1027 DGLALKAGIRSFVESESPVD ALS PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG Subject 3331 DGLALKAGIRSFVESESPVDPALSGPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 4356
Range 2: 3331 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
698.9 bits(1519) | 0.0 | 290/308(94%) | 0/308(0%) | Minus/Minus |
Query 2 IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV 925 IHF*VPFD*I *SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQ LF+VRS*H+SKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQV+S*SFNFSQLIHLY LRPVTNLFDMPNVFIRYVKQSRYAPAWINN NF+IDITFGTDVESLKSF QIHHIQTPPLT*LFK+VIGAWPT +IEHVYLTPSKC*CNGC HAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCY++QSHMVPNAE*GNHFIFC+SIFTKLLPYGWARKS INW*FTFHERPYSCLQSQTV Subject 3331 IHF*VPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPVTNLFDMPNVFIRYVKQSRYAPAWINNLNFSIDITFGTDVESLKSFRQIHHIQTPPLT*LFKNVIGAWPTQIIEHVYLTPSKC*CNGCNHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYNNQSHMVPNAE*GNHFIFCVSIFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTV 4254
Range 3: 4300 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 18/19(95%) | 0/19(0%) | Minus/Minus |
Query 971 TSL*ACNFPKEDFKGNDIP 1027 TSL*ACNFPKEDFKGN+IP Subject 4300 TSL*ACNFPKEDFKGNNIP 4356
Range 4: 3330 to 4358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
703.5 bits(1529) | 0.0 | 338/343(99%) | 0/343(0%) | Minus/Minus |
Query 1 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 1029 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTF+L*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMSKASKASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGV++ISLTWCLTQNKAIISFSA*AFSPSCFRMVG ERA STGDSLSTNDLIPAFKAKPS Subject 3330 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMSKASKASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVIIISLTWCLTQNKAIISFSA*AFSPSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPS 4358
Range 5: 3330 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
662.3 bits(1439) | 0.0 | 283/303(93%) | 0/303(0%) | Plus/Plus |
Query 1 RRFGFEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK 909 RRFGFEGRNKVVRGK*ITS* SSF PNHTEATW*KCL RK*NDCLILR*APCETD++NTRI*GELEVWGK*VASMWNFVFEVKSFS LCPS*WLHD SHCISTWKA*GRRAQL +*AKHQSH *RAMS GGSEYDVFG SF*GFRHLCQM*CQWRN* Y*SRRAHICSV*HNE*TH*ACRKDW*RASK+KGG*AAKS*TISS PAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACW VNF*H TK +DSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSS+FNQK Subject 3330 RRFGFEGRNKVVRGK*ITS*SSSFGPNHTEATW*KCLRRK*NDCLILR*APCETDYYNTRI*GELEVWGK*VASMWNFVFEVKSFSALCPS*WLHDYSHCISTWKA*GRRAQLFV*AKHQSHF*RAMSGGGSEYDVFGGSF*GFRHLCQM*CQWRN*GY*SRRAHICSV*HNE*TH*ACRKDW*RASKYKGG*AAKS*TISS*PAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQK 4238
Range 6: 4223 to 4357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 43/45(96%) | 0/45(0%) | Plus/Plus |
Query 894 RIQSKGT*KWMKSVXXXXXXXXXXXXGMSLPLKSSLGKLQA*RLV 1028 +IQSKGT*KWMKSVRW*RQANQRRRAGM LPLKSSLGKLQA*RLV Subject 4223 QIQSKGT*KWMKSVRW*RQANQRRRAGMLLPLKSSLGKLQA*RLV 4357
Range 7: 3332 to 4318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
677.4 bits(1472) | 0.0 | 310/329(94%) | 0/329(0%) | Minus/Minus |
Query 3 QR*RHXXXXXXXXXXXXPYTLHPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSKPNR 989 QR*+HPSPPSLICLPSPPYTLHPFLGPF*LN LEPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLS FV*CQKLT QQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAG ELIV*LFAAHPPL FEARYQSFRHA*CVHSLCQTEQICARLD** QF H*HHIWHRCRKPQKL PNTSYSDPP DIALQ+CDWCLAY +N*ARLPHAFQVLMQWL SCSH*EGHK ENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFL KHFHQVASVWLG KEL+QLVIHFPRTTLFLPSKPNR Subject 3332 QR*QHPSPPSLICLPSPPYTLHPFLGPF*LNLLEPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGQELIV*LFAAHPPLYFEARYQSFRHA*CVHSLCQTEQICARLD**PQFLH*HHIWHRCRKPQKLPPNTSYSDPPPDIALQKCDWCLAYTNN*ARLPHAFQVLMQWL*SCSH*EGHKAENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLRKHFHQVASVWLGPKELDQLVIHFPRTTLFLPSKPNR 4318
Range 8: 3332 to 4189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
564.7 bits(1226) | 0.0 | 268/286(94%) | 0/286(0%) | Plus/Plus |
Query 3 TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXXPYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN 860 TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVKML QKMK*LPYSALGTM*D* *HQNMR*AGSLGKMSGLYVEFCV*SQIIF+LVPLLMAA* QPLHQHLEGVR*TCSI VGQAPIT LKSYV+GGV*I*CIW+KLLRLSTSVPNVMSM KL+LLIQAGAYLLCLT*RMNTLGMSKRLVTGLK *RWMSCEKLNDQL TCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLL CQLLT NK +*QLCLVHLGLERVSYTRAS*RDLKEN Subject 3332 TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVKMLTQKMK*LPYSALGTM*D*LL*HQNMR*AGSLGKMSGLYVEFCV*SQIIFSLVPLLMAA*LQPLHQHLEGVR*TCSIICVGQAPITFLKSYVRGGV*I*CIWRKLLRLSTSVPNVMSMEKLRLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 4189
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 10
Range 1: 3331 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
807.5 bits(1756) | 0.0 | 337/342(99%) | 0/342(0%) | Plus/Plus |
Query 2 DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 1027 DGLALKAGIRSFVESESPVD ALS+PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTS IKQRELTVVLGTFGAGKSFL+KSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG Subject 3331 DGLALKAGIRSFVESESPVDPALSNPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSGIKQRELTVVLGTFGAGKSFLHKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 4356
Range 2: 3330 to 4358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
678.8 bits(1475) | 0.0 | 328/343(96%) | 0/343(0%) | Minus/Minus |
Query 1 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 1029 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLL RKLFPAPNVPSTTVNSLCLM EVDTPASQGFESLNFSSLITPVKPPSKHP*SFSA SKLGKYVIFDPF+ESRSRADRLTFRSSSTF+L*GPLPIFSTCLMCSFVMS RADMRPPGLITSISPLTSHLAQMSKAS ASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADA+AVIMQPLRGAQG*K* DFKHKIPHRGHSFSPNFQLTSYSGV+MISLT CLTQNKAIISFSA*AFSPSCFR+VG ERA STGDSLSTNDLIPAFKA+PS Subject 3330 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLCRKLFPAPNVPSTTVNSLCLMPEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSARSKLGKYVIFDPFKESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSKRADMRPPGLITSISPLTSHLAQMSKASNASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHKIPHRGHSFSPNFQLTSYSGVIMISLT*CLTQNKAIISFSA*AFSPSCFRIVGFERAGSTGDSLSTNDLIPAFKARPS 4358
Range 3: 3331 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
632.9 bits(1375) | 0.0 | 269/308(87%) | 0/308(0%) | Minus/Minus |
Query 2 IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV 925 IHF VPFD*I *SPPR*DKCYKFSFRSLHEALV*ETLSSPKC KH+CQ LF+ RS H+SKPRL*IVKFLITYHAS TSQQAPLKFFRPLKTWKICYL*PVQRKQV+S*SFNFSQLIHLY LRPVTNLFDMPNVFIRYVK+SRYAPAWI+NFNF IDITF TDVESLK FCQIHHIQTPPLT*LFKDVIGA PT*VIEHVYLTPSKC*CN C HAAIKRGTRLKMI L TQNST*RP I PKLPAH IFW Y+DQSHM+PN E*GNHFIFCISIFTKLLPY W KS IN *FTFH+RPYS LQS T+ Subject 3331 IHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCAKHDCQFSLFDARSRHSSKPRL*IVKFLITYHAS*TSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPVTNLFDMPNVFIRYVKKSRYAPAWIDNFNFTIDITFSTDVESLKRFCQIHHIQTPPLT*LFKDVIGAGPT*VIEHVYLTPSKC*CNSCNHAAIKRGTRLKMIGL*TQNST*RPFILPKLPAHFIFWRYNDQSHMMPNTE*GNHFIFCISIFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS*TI 4254
Range 4: 4300 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 18/19(95%) | 0/19(0%) | Minus/Minus |
Query 971 TSL*ACNFPKEDFKGNDIP 1027 TSL*ACNFPK+DFKGNDIP Subject 4300 TSL*ACNFPKKDFKGNDIP 4356
Range 5: 3342 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
602.7 bits(1309) | 0.0 | 261/299(87%) | 0/299(0%) | Plus/Plus |
Query 13 FEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK 909 FEG NKVV GK*IT * SSF+PN+TEATW*KCLCRK*NDCLIL *A CETDH+N RI* ELEVWG+*+ASMWNFVF+V+SFSTLCPS*WLHD S+CISTWKA*GRRAQLLM*A+HQSHL*RAMSRGGSEYDVFGRS *GFRHLC M*CQW N*SY SRRAHICS *HNE*TH*ACRKDW*RASK+KGG*AAKS*TISS PAF ERVKDNIFSKF* GGKTSGVLAGRF+WRDK**EI*RFKALACW V F H TK +DS AW+IWGWKEFP QELHEEI*RKICNICLT*AGSS+FNQK Subject 3342 FEGGNKVVCGK*ITG*SSSFKPNYTEATW*KCLCRK*NDCLILC*ASCETDHYNARI*SELEVWGE*MASMWNFVFKVQSFSTLCPS*WLHDYSYCISTWKA*GRRAQLLM*AQHQSHL*RAMSRGGSEYDVFGRSV*GFRHLC*M*CQW*N*SYQSRRAHICSF*HNE*TH*ACRKDW*RASKYKGG*AAKS*TISS*PAFFERVKDNIFSKF*AGGKTSGVLAGRFNWRDK**EI*RFKALACWSVYFWHQTKRIDSRAWHIWGWKEFPTQELHEEI*RKICNICLT*AGSSKFNQK 4238
Range 6: 4281 to 4358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 25/26(96%) | 0/26(0%) | Plus/Plus |
Query 952 QIKEGGLGCRYL*SLP*ESYRPKGWS 1029 QIKEGGLGCRYL*SL *ESYRPKGWS Subject 4281 QIKEGGLGCRYL*SLS*ESYRPKGWS 4358
Range 7: 4223 to 4264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 11/14(79%) | 0/14(0%) | Plus/Plus |
Query 894 RIQSKGT*KWMKSV 935 +IQSKGT KWM SV Subject 4223 QIQSKGTWKWMMSV 4264
Range 8: 3341 to 4318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
608.2 bits(1321) | 0.0 | 289/326(89%) | 0/326(0%) | Minus/Minus |
Query 12 QR*RHXXXXXXXXXXXXPYTLHPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSK 989 QR*RHPSPPSLICLPS PYT HPF GPF*LN LEPA*VRQMLQIFLQISS*SSC+GNSFQPQM QA+LS FV*CQK T QQAKALNR*ISHHLSRQ NLPASTPEVFPP+QNLENMLSLTRS+KAG ELIV*LFAAHPPL FEARYQSFRHA*CVHSLCQ EQICARLD**LQF H*HHI HRCRKPQ LLPNTSYSDPPLDIALQRCDWC AYISN*ARLPHAFQVLMQ L SCSH*EGHKVEND T NTKFHIEA H PQTSSS HIL L**SVSH A* RIRQSFHFLHKHFHQVASV LG KEL+Q VIHFP+TTLF PSK Subject 3341 QR*RHPSPPSLICLPSLPYTHHPFPGPF*LNLLEPA*VRQMLQIFLQISS*SSCVGNSFQPQMCQARLSILFV*CQK*TLQQAKALNR*ISHHLSRQLNLPASTPEVFPPAQNLENMLSLTRSKKAGQELIV*LFAAHPPLYFEARYQSFRHA*CVHSLCQKEQICARLD**LQFHH*HHI*HRCRKPQTLLPNTSYSDPPLDIALQRCDWCWAYISN*ARLPHAFQVLMQ*L*SCSH*EGHKVENDWTLNTKFHIEAIHSPQTSSSLHILAL**SVSHDA*HRIRQSFHFLHKHFHQVASV*LGLKELDQPVIHFPQTTLFPPSK 4318
Range 9: 3341 to 4189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
510.1 bits(1107) | 0.0 | 250/283(88%) | 0/283(0%) | Plus/Plus |
Query 12 L*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXXPYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN 860 L*R+E*GR WKVNH+LIQLF+ Q YGSNLVKMLMQKMK*LPYS LG M*D*S * QNM+*AGSLG+M+GLYVEFCV*S IIFNLVPLLMAA* Q LHQHLEGVR*TCSITYVG APITSLKSYVKGGV*I*CIWQK LRLSTSV NVMSM KLKL IQAGAYLL LT*RMNTLGMSKRLVTGLK *RWMSCEKLNDQL TCFL*TGQR*HIFQVL GRKNFRGACWEV*LA**VMRNLTIQSLGLL C LL NK +*Q CL HLGLERVSYTRAS*RDLKEN Subject 3341 L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVKMLMQKMK*LPYSVLGIM*D*SL*RQNMK*AGSLGRMNGLYVEFCV*SPIIFNLVPLLMAA*LQLLHQHLEGVR*TCSITYVGPAPITSLKSYVKGGV*I*CIWQKRLRLSTSVLNVMSMVKLKLSIQAGAYLLFLT*RMNTLGMSKRLVTGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLSGRKNFRGACWEV*LA**VMRNLTIQSLGLLECLLLASNKEN*QSCLAHLGLERVSYTRAS*RDLKEN 4189
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 10
Range 1: 3313 to 4338 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
777.7 bits(1691) | 0.0 | 324/342(95%) | 0/342(0%) | Plus/Plus |
Query 2 DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 1027 DGLALKAGIRSFVESE V+ LS+P I KQL ENAYAENEMIALFC+RHHVRLI+ITPEYEVSWKFGE EWPLCGILCLKS+HFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDS+PWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDE CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG Subject 3313 DGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSSHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPRGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSRPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEGCKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 4338
Range 2: 3312 to 4340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
591.7 bits(1285) | 0.0 | 290/343(85%) | 0/343(0%) | Minus/Minus |
Query 1 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 1029 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH SSISRSLLIEFA+ARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQG ESLNFSSLITPV+PPSKHP*SFSA SKLGKYVIFDPF+ESRSRADRLTFRSSSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP SHLAQMSKASKASAKYI+ RPPP* SSSK+*LVLGLH+* +TSTSRLPSA+AMAVIMQP GA G K* D + +IPHRGHS SPNFQLTSYSGV+ ISLTWC QN AIISFSA*AFS +C M G ER+ T SLST D IPAF+A PS Subject 3312 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHPSSISRSLLIEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGLESLNFSSLITPVRPPSKHP*SFSARSKLGKYVIFDPFKESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSLVMSNNAEILPRGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFNGAHGWK*LDLRQRIPHRGHSPSPNFQLTSYSGVITISLTWCRIQNNAIISFSA*AFSSNCLEMAGAERSGFTKRSLSTKDRIPAFRASPS 4340
Range 3: 3313 to 4236 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
442.8 bits(960) | 0.0 | 198/308(64%) | 0/308(0%) | Minus/Minus |
Query 2 IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV 925 IH VPFD*I *SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTK+NCQ LFNV S*H+SKPR *I+KFL+ YH S TSQQAPLKFFRPLKTWKICYL*PVQRKQV+S*SFNFSQLIH Y LRP+TNLFDMP V I YVKQ R IN+FN +I ITF +V+ LKSF IHH++TP LT L K++I A T +I H+ TPSKC* NGC HA I+ GT L++ * + +NS P FPK P IFWC Q HMVPN +* NH I ISI +L GW K I T H+R + LQ +++ Subject 3313 IHLQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKYNCQFSLFNVGS*HSSKPRP*IIKFLVAYHTS*TSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHFYTLRPITNLFDMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKTPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGTWLEVT*FKAKNSAQGPFTFPKFPTDFIFWCDYYQPHMVPNTK*CNHLILGISILFQLFRNGWG*KIWIYQALTLHKRSNTGLQGKSI 4236
Range 4: 4282 to 4338 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 15/19(79%) | 0/19(0%) | Minus/Minus |
Query 971 TSL*ACNFPKEDFKGNDIP 1027 TSL*ACNFPK++FKG++IP Subject 4282 TSL*ACNFPKKNFKGDNIP 4338
Range 5: 3327 to 4220 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
413.9 bits(897) | 0.0 | 192/298(64%) | 0/298(0%) | Plus/Plus |
Query 16 EGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK 909 EGR + G+* SF P+H +CLCR+*+DC+IL APCE D ++TRI* +LE+WG+*+A + N + +KS T+CP WLHD+SHC STWKA* +L +* +H S+ * A+S GS +DVF SF*G HL M* +WR+*S *S + C V*HN * H ACRKDW* ASK+K G*AAKS*TISS PAF ERVKDNIFSKF* GGKTSGVLAGR +W DK EI* FKALACW VNF H*TK +DSC WYIWGWKEFPIQELHEEI*RKICNICLT*AG S+FNQK Subject 3327 EGRYSIFCGE*ALGKSRSFSPSHF*TIGRECLCRE*DDCIILYSAPCEADSNHTRI*SQLEIWGR*MAPVRNSLP*IKSLPTMCPIEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGS*HDVFS*SF*GL*HLR*M*YKWRD*SD*SAW*NFCIV*HN**AHKACRKDW*WASKYKSG*AAKS*TISS*PAFFERVKDNIFSKF*AGGKTSGVLAGRSNWCDKRREI**FKALACWSVNFRH*TKRIDSCTWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQK 4220
Range 6: 4263 to 4340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 22/26(85%) | 0/26(0%) | Plus/Plus |
Query 952 QIKEGGLGCRYL*SLP*ESYRPKGWS 1029 QIKEGGLGC +L*S *ESYRPKGWS Subject 4263 QIKEGGLGCCHL*SFS*ESYRPKGWS 4340
Range 7: 3326 to 4300 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.4 bits(837) | 0.0 | 209/325(64%) | 0/325(0%) | Minus/Minus |
Query 15 QR*RHXXXXXXXXXXXXPYTLHPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPS 989 QR*+HPSPPSLICLPSPPYT HP GPF*LN L+PA*VRQMLQIFLQISS*SSCIGNSFQPQMYQ QLS FV*C+KLT QQAKALN *IS LS Q +LPASTPEVFPP+QNLENMLSLTRS+KAG ELIV*LFAAHP L FEA YQSFRHA C H LCQT Q D* LQ H +HI +C++PQKL NTS DP D A Q+ D C Y N HAFQVL QWL SC+H GH V +DL +F A H PQ S+ HILV S SHGA +I QS H HKH + WLG K+L+ H P+ + PS Subject 3326 QR*QHPSPPSLICLPSPPYTPHPSPGPF*LNLLKPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQVQLSILFV*CRKLTLQQAKALNH*ISRRLSHQLDLPASTPEVFPPAQNLENMLSLTRSKKAGQELIV*LFAAHPLLYFEAHYQSFRHALCAH*LCQTMQKFYHAD*SLQSLHLYHI*RKCQRPQKLQLNTSC*DPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSMGHMVGSDLI*GKEFRTGAIHLPQISN*LHILV*LLSASHGAEYKIMQSSHSRHKHSLPIV*KWLGLKDLDLPSAHSPQKIEYRPS 4300
Range 8: 3446 to 4171 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.5 bits(680) | 0.0 | 160/242(66%) | 0/242(0%) | Plus/Plus |
Query 135 YSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN 860 Y GTM* * HQNM+ G+LGK++G EF +Q+ N VP M A* QPL QHLEGV+ C I V A I L+S+V+ GV *CI KLLR T NV+ M +LK LI+ +L CLT* M+T GMSKRLV GLK *+WMSCEKLNDQL TCFL*TGQR*HIFQVL GRKNFRGACWEV*L ** RNL IQ LGLL CQL TLNK +*QL LVHLGLERVSYTRAS*RDLKEN Subject 3446 YFVFGTM*G***SHQNMKSVGNLGKVNGPCAEFFALNQVTSNHVPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGVLT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMSKRLVMGLKV*KWMSCEKLNDQLLTCFL*TGQR*HIFQVLSGRKNFRGACWEV*LV**ATRNLMIQGLGLLECQLPTLNKEN*QLYLVHLGLERVSYTRAS*RDLKEN 4171
Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome
Sequence ID: KR054734.1 Length: 8753 Number of Matches: 12
Range 1: 3331 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
771.8 bits(1678) | 0.0 | 316/342(92%) | 0/342(0%) | Plus/Plus |
Query 2 DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 1027 DGLALKAGIRSFVESES VD +LS+ T+ +QL +NAYAENEMIALFC+RHHVRLIIITPEYEVSWKFG++EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINPGGR+SALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWL+G+STSDIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ CKV KAGKSKKEGWDVVTFEVFLRK+ LKAG Subject 3331 DGLALKAGIRSFVESESLVDPSLSAQTVLRQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKKEGWDVVTFEVFLRKIANLKAG 4356
Range 2: 3462 to 4355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
521.1 bits(1131) | 0.0 | 248/298(83%) | 0/298(0%) | Minus/Minus |
Query 133 PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNK 1026 PAFR FLR TSKVTTSQPSFFDLPAF TL SSIS+SLLIEFARA LGET VTN PSDLF+KLLYRKL PAP VPSTTVNS L+SEVD P S G ESLNFSSLITPVKPPSKHP SFSALSKLGK VIFDPF E RSRADR TF SSSTFML GPLPIFSTCL+CS VMSNRADMRPPGL+TSISPL SHLAQMS ASKASA+YI+F+PPP*HSSS M* V GLH+*L TSTSRLPSA+A+AVIMQP GAQG*K*FD KHKIPHRGHS SPNFQLTSYSGV+MISLT CL QNK Subject 3462 PAFRFAIFLRNTSKVTTSQPSFFDLPAFATLQLSSISKSLLIEFARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLISEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTFLSSSTFMLCGPLPIFSTCLICSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHRGHSLSPNFQLTSYSGVIMISLT*CLMQNK 4355
Range 3: 3330 to 3425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 17/32(53%) | 0/32(0%) | Minus/Minus |
Query 1 SCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 96 SC + V ++ ST DSLST + +PAFKA PS Subject 3330 SCLKTVWADKDGSTRDSLSTKERMPAFKASPS 3425
Range 4: 3331 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 162/308(53%) | 0/308(0%) | Minus/Minus |
Query 2 IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV 925 IHF V F+*I *SP *+K Y+F+FR LH+ALV + +S K KH+CQL F++RS*++ +P L IVK LITYH S Q PL+ F P KTWK+ YL* + K+V+S SF+FSQLIHLYALR V NL +M N+ + YVK S +APA +++ N IDIT +V+ +SF +IHH+QT LT LFK VI P V+++++ T ++ + C HAAI GTRLKMI*LQ +ST RPL KLP HLIFW +DQ HM+PNA+*G HF+ CISI T+L G + I FTF+ER Y+C QS+ + Subject 3331 IHFQVSFN*IC*SPSG*NKGYEFAFRPLHKALVQKAFTSSKGAKHDCQLSRFDIRS*YS*EPWLGIVKLLITYHTS*AP*QTPLQLFSPFKTWKVSYL*SIH*KEVKSRSFHFSQLIHLYALRAVANLLNMSNMLVGYVK*S*HAPARVDDLNLPIDITLSANVKCFESFSEIHHVQTTTLTQLFKYVICGGPAQVVKNIHFTSTERRGDSCDHAAI*WGTRLKMI*LQA*DSTQRPLAISKLPTHLIFWGNNDQPHMMPNAK*GYHFVLCISIITELPQNGLG*QRWIYKRFTFNERTYACFQSKPI 4254
Range 5: 4300 to 4341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Minus |
Query 971 CNFPKEDFKGNDIP 1012 CNFPK+ FKG+++P Subject 4300 CNFPKKHFKGHNVP 4341
Range 6: 3678 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 96/187(51%) | 0/187(0%) | Plus/Plus |
Query 349 AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK 909 A H+SH+*RA+SR E+DV SF HL +* QW +* + RAH+ S+*HN+ +* C +DW R ++HKGG*A KS TI S P F+E +KDN+ SKF*+G K +GV A +W DK**E+*RF+A+A +NF*+ VDS AW++W W + +QEL+EE+*R+I N+C T GSS+FN K Subject 3678 ALHKSHI*RAVSRWWFEHDVSR*SFRSI*HLR*V*YQWGD*GHQPWRAHVSSI*HNQRAY*TC*EDWQRPAEHKGG*AEKSETICS*PPFNEWIKDNLLSKF*KG*KAAGVFARGLNWCDK**EV*RFQAMALRNINF*YQISRVDSRAWHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSKFN*K 4238
Range 7: 3342 to 3626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 55/95(58%) | 0/95(0%) | Plus/Plus |
Query 13 FEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSH 297 FE R+ R K*I+ PN EA * CLCR+ ND LIL *A CE DH+ RI*GELEVW VAS+WN + VKSFSTLCP WLHD+S+ Subject 3342 FESRHTFFR*K*ISCRSIFVSPNRFEAAQ**CLCRERNDSLILH*ASCEADHYYPRI*GELEVWR*RVASVWNLMLAVKSFSTLCPIKWLHDHSY 3626
Range 8: 4313 to 4351 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 10/13(77%) | 0/13(0%) | Plus/Plus |
Query 984 PLKSSLGKLQA*R 1022 PLK LGKLQ *R Subject 4313 PLKCFLGKLQT*R 4351
Range 9: 3341 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
284.2 bits(614) | 0.0 | 157/305(51%) | 0/305(0%) | Minus/Minus |
Query 12 HPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSK 926 HPF F*LN LEP V+Q L+I LQ SS*SSC + +Q Q QA+LST +* QKL +A A NR* SHHLS Q + A+TP F P QNLE+ LSL S K G E IV LF+AHPPLC R QS +H * LCQ E CAR ** Q H*+H +C+ +KL +TS S+ LD ALQ CD A +* H ++ + L SCSH GHKVENDLT++ +FH EAT + QTS+SPHIL **S SH A* +IR SF LHKH+H AS G +++ IHF R + L SK Subject 3341 HPFPSLF*LNLLEPFWVKQRLRICLQTSS*SSCTESFYQLQRCQARLSTLEI*YQKLIFLRAMAWNR*TSHHLSHQLSPLANTPAAFQPFQNLESKLSLIHSLKGGQEQIVSLFSAHPPLCSAGRCQSSQHV*YARWLCQIELTCARQG**PQSPH*YHT*RKCQMLRKLQRDTSCSNHHLDTALQICDLWRACTGS*EHPLHVYRAQRR*L*SCSHLMGHKVENDLTASIRFHTEATRYLQTSNSPHILG***SASHDA*CKIRLSFRSLHKHYH*AASKRFGLTKMDLQEIHFQRKNVCLLSK 4255
Range 10: 3668 to 4189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 90/174(52%) | 0/174(0%) | Plus/Plus |
Query 339 TYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN 860 T G IT LKS VK V* *CI KL + T +V+SM +L+ AGA L LT* + L M +RL T +A*RWMS EK ND L T F * QR* FQVL+G K+ RG C *L **VMR+LTI S G QLL N S*Q CL L L + TRA *R LK N Subject 3668 TCAGPPQITYLKSCVKVVV*T*CISLKLSKHLTFALSVISMGRLRSSTLAGACQLYLT*PTSILDMLRRLATARRA*RWMS*EK*NDLLLTSFQ*MDQR*LTFQVLKGLKSCRGVC*GA*LV**VMRSLTIPSHGSQEYQLLISNLES*QSCLAPLELVKAFCTRAL*RGLKAN 4189
Range 11: 3461 to 3622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 36/54(67%) | 0/54(0%) | Plus/Plus |
Query 132 PYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**Q 293 PY ALG M* *S QNMR* GSL SGL VE SQIIFNLVP MAA* Q Subject 3461 PYFALGIM*G*SLLPQNMR*VGSLEIASGLCVESYACSQIIFNLVPH*MAA*SQ 3622
Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome
Sequence ID: KX274274.1 Length: 8725 Number of Matches: 7
Range 1: 3331 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
766.3 bits(1666) | 0.0 | 314/342(92%) | 0/342(0%) | Plus/Plus |
Query 2 DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 1027 DGLALKAGIRSFVESES D ALS+ T+ KQLG+NAYAENEMIALFC+RHHVRLIIITPEYEVSWKFG++EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP GR+SALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWL+G+STS+IK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK+DLEMD+ CKV KAGKSK+EGWDVVTFEVFLRK+ LKAG Subject 3331 DGLALKAGIRSFVESESIADPALSTQTVLKQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDDGCKVAKAGKSKREGWDVVTFEVFLRKIENLKAG 4356
Range 2: 3330 to 4355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
546.8 bits(1187) | 0.0 | 273/342(80%) | 0/342(0%) | Minus/Minus |
Query 1 PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 1026 PAFR FLR TSKVTTSQPS FDLPAF TL SSISRS LIE ARA LGET VTN PSDLF+KLLYRKL PAP VPSTTVNS L+ EVD P S G ESLNFSSLITPVKPPSKHP SFSALSKLGK VIFDPF E RSRADR TF SSSTFML GPLPIFSTCL+CS VMSN+ADMRP GLITSISPL SHLAQMS ASKASA+YI+FRPPP H+SSK+* V GLH+*L TSTSRLPSA+A+AVIMQP GAQG*K*FD KHKIPH+GHS SPNFQLTSYSGV+MISLT CL QNKAIISFSA*A SPSCF+ V ++RA S DSLSTN+ +PAFKA PS Subject 3330 PAFRFSIFLRNTSKVTTSQPSLFDLPAFATLQPSSISRSFLIELARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTFLSSSTFMLCGPLPIFSTCLICSLVMSNKADMRPLGLITSISPLISHLAQMSNASKASARYIMFRPPPWHNSSKI*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHKGHSLSPNFQLTSYSGVIMISLT*CLMQNKAIISFSA*ALSPSCFKTVWVDRAGSAMDSLSTNERMPAFKASPS 4355
Range 3: 3418 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.0 bits(679) | 0.0 | 144/279(52%) | 0/279(0%) | Minus/Minus |
Query 89 IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLL 925 IHF V F+*I *SPP *+K Y+ +FR LH+A V + + K +KH+CQ P F++ S*+ +P L I+KFLITY+ S S Q L+ F PLK WK+ YL + K+V+S SF+FSQ IHLYALR + NL ++ +FI YVK S +A A INN NF+I+IT GT+VE + ++HH+Q L FKD+I +++ ++LT ++ N YHAAI+ GT LKMI*LQ QNST*RPL K P HLI W +DQ HM+PNAE*G H + CISI KLL Subject 3418 IHFQVLFN*IS*SPPG*NKGYELTFRPLHKAFVQKAFACSKSSKHDCQFPRFDI*S*YP*EPWLGIIKFLITYNTS*AS*QTSLQLFSPLKAWKVSYLRSIH*KEVKSRSFHFSQFIHLYALRAIANLLNVSYMFIGYVK*S*HASARINNLNFSINITLGTNVECFEGLSEVHHVQATTLAQFFKDMICGRSAQIVKDIHLTSAERRGNSGYHAAIQWGTGLKMI*LQAQNST*RPLTISKFPTHLILWGDNDQPHMMPNAE*GYHLVLCISIVAKLL 4254
Range 4: 3330 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.9 bits(657) | 0.0 | 149/303(49%) | 0/303(0%) | Plus/Plus |
Query 1 RRFGFEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK 909 RR FE + + K*I SS PN EATW +CLCR+ +D LIL *A CE DH++ R+*GELE+W *VA MWNFV +KSFSTLCP WLHDN +C+ + *G L + H+S+L*R + R E+DV RHLCQ+* WRN* Y*S R H+ +*HN+*T+ +DW ++HKGG* KS TI S P F+E ++DN+ SK *EG K +G+ A R +W K**EI* F+A+A +NF + G+DS AW W ++ +Q+L+EE+*R + N+C T GSS FN K Subject 3330 RRACFESWHTFIC*K*IHCRSSSVNPNSFEATWRQCLCRERDDSLILH*ASCEADHYHPRV*GELEIWR**VAFMWNFVLAIKSFSTLCPIEWLHDNRYCLCARQT*GGCP*LSVQTFHKSYL*RIVPRWWPEHDVPR*GLRSIRHLCQV*Y*WRN*GY*S*RTHVSFI*HNQ*TYKTR*EDWQWPAEHKGG*TEKSETICS*PPFNEWIEDNLLSKL*EG*KAAGMFARRLNWCYK**EI**FQAMALRDINFKYQISGIDSRAWNFWSRQKLSVQKLYEEV*R*VRNLCFTQEGSS*FN*K 4238
Range 5: 3332 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.7 bits(602) | 0.0 | 152/308(49%) | 0/308(0%) | Minus/Minus |
Query 3 HPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSKPNR 926 HPF GPF*LN LEP+ V+Q L+ +LQ SS*S C + Q +QA+LS P +* KL +A A N *ISHHL Q +L A+ P F PSQ+LE+ LS S K G E IV LF+ HPPLC QS + VH LCQ + C R D** QF H*+H WH+CR ++ TS S L LQR D +* PH + Q LSCSH GH+VENDL ++TKFHI+ATH+ Q S+SPH L **S SH A* RIR S LHKH QVAS G EL+ IHF + + SK R Subject 3332 HPFPGPF*LN*LEPSWVKQRLRTYLQTSS*SFCTESFCLLQKFQARLSIPEI*YLKLISLRAMAWNH*ISHHL*HQLSLLANIPAAFQPSQSLESKLSSIHSLKGGQEQIVSLFSVHPPLCSAGHCQSSQRVLYVHWLCQIKLTCVR*D**PQFLH*YHTWHKCRMLRRPQRGTSCSGHHLGTILQRYDLWKVCTDS*GHPPHVCRAQRQ*RLSCSHSMGHRVENDLIASTKFHIKATHYLQISNSPHTLG***SASHDA*CRIRLSSRSLHKHCRQVASKLFGLTELDLQWIHFQQMNVCQLSKQAR 4255
Range 6: 3689 to 4183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 79/165(48%) | 0/165(0%) | Plus/Plus |
Query 360 ITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLK 854 I SLK+ K * *C + + ST VP+V+ M KL+LLI A A L LT* MN +RL +A*RWM+ EK ND L T F * +R* FQ LRG K+ R C E *L *VMRNL I S G QL N G+*Q CL L + T+A *R LK Subject 3689 IISLKNCAKVVA*T*CTSLRPSKHSTFVPSVILMEKLRLLILADACQLYLT*PMNI*DTLRRLAMARRA*RWMN*EK*NDLLLTSFQ*MDRR*LTFQALRGLKSCRDVC*EA*LVL*VMRNLMIPSHGSQGYQLQISNLGN*QSCLELLEQAKAFCTKAL*RGLK 4183
Range 7: 3461 to 3652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 39/64(61%) | 0/64(0%) | Plus/Plus |
Query 132 PYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR 323 PYSALG M* *S Q+MR* G+L +SGLYVEFC +QIIFN VP MAA** L VR Subject 3461 PYSALGIM*G*SLSPQSMR*VGNLEIVSGLYVEFCACNQIIFNPVPH*MAA**PLLPLRSADVR 3652
Nucleotide Sequence (117 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
81.7 | 285.6 | 18% | 5.417e-15 | 87% | KX274275.1 | |
81.7 | 282.9 | 18% | 5.417e-15 | 94% | AY368590.1 | |
79.9 | 228.2 | 28% | 1.93e-14 | 88% | KR528585.1 | |
75.3 | 139.6 | 27% | 4.631e-13 | 84% | AY881626.1 | |
75.3 | 139.6 | 27% | 4.631e-13 | 84% | JX559646.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 4
Range 1: 4257 to 4358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 34/34(100%) | 0/34(0%) | Plus/Minus |
Query 1 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS 102 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS Subject 4257 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS 4358
Range 2: 4261 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 32/32(100%) | 0/32(0%) | Minus/Plus |
Query 3 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 98 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG Subject 4261 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 4356
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 4
Range 1: 4257 to 4358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 34/34(100%) | 0/34(0%) | Plus/Minus |
Query 1 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS 102 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS Subject 4257 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS 4358
Range 2: 4261 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 32/32(100%) | 0/32(0%) | Minus/Plus |
Query 3 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 98 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG Subject 4261 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 4356
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 3
Range 1: 4242 to 4340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 33/33(100%) | 0/33(0%) | Plus/Minus |
Query 1 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 99 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH Subject 4242 *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH 4340
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 2
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 2
Nucleotide Sequence (192 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
148.2 | 838.6 | 26% | 9.142e-35 | 94% | KX274275.1 | |
147.2 | 699.8 | 25% | 1.725e-34 | 74% | AY368590.1 | |
128.0 | 335.8 | 43% | 9.953e-29 | 41% | KR054735.1 | |
125.7 | 273.9 | 49% | 4.871e-28 | 48% | KR054734.1 | |
124.8 | 388.6 | 33% | 9.194e-28 | 45% | KX274276.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7
Range 1: 3239 to 3427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 63/63(100%) | 0/63(0%) | Minus/Plus |
Query 2 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL 190 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL Subject 3239 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL 3427
Range 2: 3238 to 3426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 62/63(98%) | 0/63(0%) | Plus/Minus |
Query 3 KLLPYGWARKS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 191 KLLPYGWARKS INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* Subject 3238 KLLPYGWARKSWINW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 3426
Range 3: 3238 to 3426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 60/63(95%) | 0/63(0%) | Minus/Plus |
Query 3 SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL 191 SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS PTIRKQL Subject 3238 SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSGPTIRKQL 3426
Range 4: 3239 to 3427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 60/63(95%) | 0/63(0%) | Plus/Minus |
Query 2 QVASVWLGSKELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL 190 QVASVWLG KEL+QLVIHFPRTTLFLPSKPNRRC*EESQLSAKSS+HHQAQEKC*SLQFRNQL Subject 3239 QVASVWLGPKELDQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSYHHQAQEKC*SLQFRNQL 3427
Range 5: 3237 to 3428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.9 bits(305) | 0.0 | 61/64(95%) | 0/64(0%) | Plus/Minus |
Query 1 PSCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD 192 PSCFRMVG ERA STGDSLSTNDLIPAFKAKPSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD Subject 3237 PSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD 3428
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7
Range 1: 3238 to 3426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 60/63(95%) | 0/63(0%) | Minus/Plus |
Query 3 SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL 191 SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS+PTIRKQL Subject 3238 SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSNPTIRKQL 3426
Range 2: 3237 to 3428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(301) | 0.0 | 59/64(92%) | 0/64(0%) | Plus/Minus |
Query 1 PSCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD 192 PSCFR+VG ERA STGDSLSTNDLIPAFKA+PSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD Subject 3237 PSCFRIVGFERAGSTGDSLSTNDLIPAFKARPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD 3428
Range 3: 3239 to 3427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 50/63(79%) | 0/63(0%) | Minus/Plus |
Query 2 QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL 190 QL KLKTSTLFLCLVMVTAFGTQL FF A V L*R+E*GR WKVNH+LIQLF+ Q YGSNL Subject 3239 QLTLKLKTSTLFLCLVMVTAFGTQLVFFLAQMV*L*RRE*GRLWKVNHRLIQLFQTQLYGSNL 3427
Range 4: 3239 to 3427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 49/63(78%) | 0/63(0%) | Plus/Minus |
Query 2 QVASVWLGSKELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL 190 QVASV LG KEL+Q VIHFP+TTLF PSK + C*EE+QLSAKSS+HHQAQEKC*SLQF++QL Subject 3239 QVASV*LGLKELDQPVIHFPQTTLFPPSKLDHLC*EENQLSAKSSYHHQAQEKC*SLQFQSQL 3427
Range 5: 3238 to 3426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 49/63(78%) | 0/63(0%) | Plus/Minus |
Query 3 KLLPYGWARKS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 191 KLLPY W KS IN *FTFH+RPYS LQS T+ A+KK N*VPKAVTITRHRKSVEVFNF++S* Subject 3238 KLLPYSWV*KSWINR*FTFHKRPYSRLQS*TICAKKKTN*VPKAVTITRHRKSVEVFNFKVS* 3426
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 4
Range 1: 3238 to 3426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 52/63(83%) | 0/63(0%) | Minus/Plus |
Query 3 SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL 191 SAD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESES VDS SSP I +QL Subject 3238 SADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESLVDSTFSSPIISRQL 3426
Range 2: 3237 to 3428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.4 bits(241) | 0.0 | 47/64(73%) | 0/64(0%) | Plus/Minus |
Query 1 PSCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD 192 PSC M+GLE+ EST DSLSTN+ +PAFKA PSVL + PTECQKQ PSPGT KVLKSSIS SA+ Subject 3237 PSCLEMIGLEKVESTNDSLSTNERMPAFKASPSVLSKNPTECQKQLPSPGTEKVLKSSIS*SAE 3428
Range 3: 3238 to 3399 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 25/54(46%) | 0/54(0%) | Plus/Minus |
Query 30 KS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS* 191 K *I+ *FT +E Y+CLQ + A+ + N VP+A+T+ H K VE+ N IS* Subject 3238 KG*IHQ*FTLNE*TYACLQG*PICAK*EPNRVPEAITVAWH*KGVEIINIIIS* 3399
Range 4: 3239 to 3400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 22/54(41%) | 0/54(0%) | Plus/Minus |
Query 29 KELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL 190 K LN +IH R + LPS+ C* +Q SA+S++ A ++C*+ Q+ NQL Subject 3239 KRLNPPMIHSQRMNVCLPSRLAHLC*VRTQQSARSNYRRLALKRC*NHQYHNQL 3400
Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome
Sequence ID: KR054734.1 Length: 8753 Number of Matches: 3
Range 1: 3238 to 3426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 50/63(79%) | 0/63(0%) | Minus/Plus |
Query 3 SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL 191 SAD++I+DFN FPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESES VD +LS+ T+ +QL Subject 3238 SADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESLVDPSLSAQTVLRQL 3426
Range 2: 3237 to 3425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.6 bits(201) | 0.0 | 40/63(63%) | 0/63(0%) | Plus/Minus |
Query 4 SCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD 192 SC + V ++ ST DSLST + +PAFKA PSVL +KPTECQKQ PSPGTG +LKSS+S SA+ Subject 3237 SCLKTVWADKDGSTRDSLSTKERMPAFKASPSVLNKKPTECQKQLPSPGTGNLLKSSMS*SAE 3425
Grapevine rupestris stem pitting associated virus isolate SK704 C, complete genome
Sequence ID: KX274276.1 Length: 8726 Number of Matches: 5
Range 1: 3242 to 3427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 51/62(82%) | 0/62(0%) | Minus/Plus |
Query 3 ADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL 188 AD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESE V S LS+PTI KQL Subject 3242 ADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSSDLSAPTISKQL 3427
Range 2: 3241 to 3426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.0 bits(211) | 0.0 | 43/62(69%) | 0/62(0%) | Plus/Minus |
Query 4 SCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSA 189 +C +VG ER+E T SLST D +PAF+A+PSVL +KPTECQKQ PSPGT KVLKSSIS SA Subject 3241 NCLEIVGAERSELTRRSLSTKDRMPAFRARPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SA 3426
Range 3: 3242 to 3427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 29/62(47%) | 0/62(0%) | Plus/Minus |
Query 3 KLLPYGWARKS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS 188 +L W+ K * N FTFHER + LQS+T+ E++ N*+PKA+ ITR+ +SV++ N IS Subject 3242 QLFRNSWS*KI*TNQAFTFHERSNAGLQSKTISTEQETN*MPKAIAITRYGESVKIINIIIS 3427
Range 4: 3243 to 3401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 24/53(45%) | 0/53(0%) | Plus/Minus |
Query 29 KELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQ 187 K+LN +HFPR PS+ + + * +QL+AKS+ HHQ + KC*+ Q+ NQ Subject 3243 KDLN*PGVHFPRKIECRPSEQDHQY*ARNQLNAKSNCHHQVRRKC*NHQYHNQ 3401
Range 5: 3243 to 3425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 28/61(46%) | 0/61(0%) | Minus/Plus |
Query 5 LISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSN 187 LI L TL LVM AFG QL S V L*R SWKVN L+Q+F+ Q + +N Subject 3243 LIMILMILTLSPYLVMAIAFGIQLVSCSVLMVLL*RPAFDLSWKVNAWLVQIFQLQLFLNN 3425
Nucleotide Sequence (199 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
160.5 | 838.8 | 25% | 1.972e-38 | 92% | AB277783.1 | |
160.5 | 830.1 | 25% | 1.972e-38 | 91% | KX274275.1 | |
156.4 | 453.5 | 34% | 3.437e-37 | 45% | AB277787.1 | |
156.4 | 778.3 | 25% | 3.437e-37 | 84% | AY368590.1 | |
156.4 | 459.9 | 33% | 3.437e-37 | 46% | KX274277.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8
Range 1: 1286 to 1483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 65/66(98%) | 0/66(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 198 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL Subject 1286 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL 1483
Range 2: 1285 to 1482 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Minus |
Query 2 NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 199 NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN Subject 1285 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 1482
Range 3: 1286 to 1483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 62/66(94%) | 0/66(0%) | Plus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 198 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS+SYLTRKFEIGIMR *INCLLAKAN HTLNIQ Subject 1286 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKANQHTLNIQ 1483
Range 4: 1287 to 1481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 60/65(92%) | 0/65(0%) | Plus/Minus |
Query 3 ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 197 ISFYVLLQQCRTSAYHR SDPLISIR*QHQM* LVPHKEV*NRNYA+ LNQLPPCQSK AHPQHP Subject 1287 ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHP 1481
Range 5: 1359 to 1481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 40/41(98%) | 0/41(0%) | Minus/Plus |
Query 3 SNFLVRYEELHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 125 SNFLVRYE LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN Subject 1359 SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 1481
Range 6: 1285 to 1326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 13/14(93%) | 0/14(0%) | Minus/Plus |
Query 158 VGC*GCANLLWQGG 199 VGC*GCA+LLWQGG Subject 1285 VGC*GCADLLWQGG 1326
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8
Range 1: 7030 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 65/66(98%) | 0/66(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 198 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL Subject 7030 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL 7227
Range 2: 7029 to 7226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Minus |
Query 2 NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 199 NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN Subject 7029 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 7226
Range 3: 7031 to 7225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 59/65(91%) | 0/65(0%) | Plus/Minus |
Query 3 ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 197 ISFYVLLQQCRTSAYHR SDPLISIR*QHQM* L PHKEV*N+NYA+ LNQLPPCQSKLAHPQHP Subject 7031 ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHP 7225
Range 4: 7030 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 198 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS+S+LTRKFEI IMR *INCLLAKAN*HTLNIQ Subject 7030 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQ 7227
Range 5: 7103 to 7225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 39/41(95%) | 0/41(0%) | Minus/Plus |
Query 3 SNFLVRYEELHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 125 SNFLVR E LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN Subject 7103 SNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 7225
Range 6: 7029 to 7070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 14/14(100%) | 0/14(0%) | Minus/Plus |
Query 158 VGC*GCANLLWQGG 199 VGC*GCANLLWQGG Subject 7029 VGC*GCANLLWQGG 7070
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 5
Range 1: 1286 to 1483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 61/66(92%) | 0/66(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 198 LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRHR KL Subject 1286 LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKL 1483
Range 2: 1285 to 1470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 52/62(84%) | 0/62(0%) | Plus/Minus |
Query 14 CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 199 CLVAA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+ Subject 1285 CLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS 1470
Range 3: 1286 to 1483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 33/66(50%) | 0/66(0%) | Plus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 198 QF SM CC +VEP+LI +P Q* N+KC + +L + E+GI+R C*+ LL+KAN +LNIQ Subject 1286 QFASMPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*VYGLLSKANEDSLNIQ 1483
Range 4: 1287 to 1481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 29/65(45%) | 0/65(0%) | Plus/Minus |
Query 3 ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 197 + F LL + RT+AY P SI Q QM P + *+RN A+LL PP QSK PQHP Subject 1287 VCFDALLLRRRTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLGLRPPFQSK*GLPQHP 1481
Range 5: 1288 to 1479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 32/64(50%) | 0/64(0%) | Minus/Plus |
Query 5 GC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRSYI*CCYLIEIKGSDPR**ALVLHCCNKT*KE 196 GC*G +LLW+GG SS A FR Q +L G I* C +IE+ G + R *ALVL NK K+ Subject 1288 GC*GSPHLLWKGGRRPSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVLRRSNKASKQ 1479
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8
Range 1: 7030 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 63/66(95%) | 0/66(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 198 LDVEGVLICFGKEAV+LAAAHNSDFKLPCEVRG TFDVVTLLKSRDPT DDKHWFYIAATRHRKKL Subject 7030 LDVEGVLICFGKEAVNLAAAHNSDFKLPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL 7227
Range 2: 7029 to 7226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 63/66(95%) | 0/66(0%) | Plus/Minus |
Query 2 NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 199 NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV PRTSQGSLKSELCAAAK TASLPKQISTPSTSN Subject 7029 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQGSLKSELCAAAKLTASLPKQISTPSTSN 7226
Range 3: 7030 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 57/66(86%) | 0/66(0%) | Plus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 198 Q L MSCCSNVEPVLII GRI *FQ*GNNIKCS+SYLTRKFEI IMR C +NCLLAKAN*HTLNIQ Subject 7030 QLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRKFEI*IMRSCQVNCLLAKAN*HTLNIQ 7227
Range 4: 7031 to 7222 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 54/64(84%) | 0/64(0%) | Plus/Minus |
Query 6 SFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 197 S YVLLQQCRTSAYH+ SD LISIR*QHQM* LVPHKEV*N NYA+L + LPPCQSKLAHPQHP Subject 7031 SSYVLLQQCRTSAYHQRSDLLISIR*QHQM*YLVPHKEV*NLNYAQLPS*LPPCQSKLAHPQHP 7222
Range 5: 7103 to 7225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 36/41(88%) | 0/41(0%) | Minus/Plus |
Query 3 SNFLVRYEELHLMLLPY*NQGIRPPMISTGSTLLQQDIERN 125 SNFLVRYE LHLMLLPY*NQ IRP MISTGSTLLQQDI R+ Subject 7103 SNFLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS 7225
Range 6: 7029 to 7070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 14/14(100%) | 0/14(0%) | Minus/Plus |
Query 158 VGC*GCANLLWQGG 199 VGC*GCANLLWQGG Subject 7029 VGC*GCANLLWQGG 7070
Grapevine rupestris stem pitting associated virus isolate SK30, complete genome
Sequence ID: KX274277.1 Length: 8724 Number of Matches: 5
Range 1: 7030 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 61/66(92%) | 0/66(0%) | Minus/Plus |
Query 1 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL 198 LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRHR KL Subject 7030 LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKL 7227
Range 2: 7029 to 7226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 53/66(80%) | 0/66(0%) | Plus/Minus |
Query 2 NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN 199 N CLVAA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+ Subject 7029 NLLRCLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS 7226
Range 3: 7030 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 34/66(52%) | 0/66(0%) | Plus/Minus |
Query 1 QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ 198 QF SM CC +VEP+LI +P Q* N+KC + +L + E+GI+R C*I LL+KAN ++LNIQ Subject 7030 QFASMPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQ 7227
Range 4: 7031 to 7225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 30/65(46%) | 0/65(0%) | Plus/Minus |
Query 3 ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP 197 I F LL + RT+AY P SI Q QM P + *+RN A+LL+ PP QSK PQHP Subject 7031 ICFDALLLRRRTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHP 7225
Range 5: 7032 to 7226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 33/65(51%) | 0/65(0%) | Minus/Plus |
Query 2 GC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRSYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI 196 GC*G ++LLW+GG SS A FR Q +L G I* C +IE+ G + R *ALVL NK K+I Subject 7032 GC*GSSHLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVLRRSNKASKQI 7226
Nucleotide Sequence (181 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
134.4 | 554.0 | 25% | 9.889e-31 | 89% | AB277783.1 | |
133.5 | 571.6 | 27% | 1.866e-30 | 90% | KX274275.1 | |
132.6 | 509.3 | 25% | 3.523e-30 | 67% | AY368590.1 | |
124.3 | 203.1 | 30% | 9.735e-28 | 57% | AY881626.1 | |
124.3 | 200.4 | 30% | 9.735e-28 | 55% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 824 to 1000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 58/59(98%) | 0/59(0%) | Minus/Plus |
Query 3 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 179 VIIMNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP Subject 824 VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 1000
Range 2: 822 to 965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 43/48(90%) | 0/48(0%) | Plus/Minus |
Query 38 PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH 181 PQ*QVLLLN FYHYQE E+QLEI*ARYK+PQTQT*TKL*LSYS**SH Subject 822 PQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SH 965
Range 3: 940 to 1002 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.2 bits(91) | 0.0 | 20/21(95%) | 0/21(0%) | Plus/Minus |
Query 1 SGTPAVKAIKLSSSVTSSLIK 63 SGTPAVKA+KLSSSVTSSLIK Subject 940 SGTPAVKAMKLSSSVTSSLIK 1002
Range 4: 824 to 1000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 54/59(92%) | 0/59(0%) | Plus/Minus |
Query 3 GNAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQSFN*VIHNNH 179 GNAGRKGY+TLVLSDKFSY*T FTTTRN +N+NWKSEHAINTHKLKRRQSFN*VIHNNH Subject 824 GNAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNH 1000
Range 5: 823 to 1002 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 54/60(90%) | 0/60(0%) | Minus/Plus |
Query 1 CDYYE*LS*SFVYV*VCGCL*RAQIXXXXXXXXXXW*K*FNKRTCH*GREFYSLYGRRSR 180 CDYYE*LS*SFVYV*VCG L*RAQISSC S SW*W*K FNKRTCH*GREF+SLYGRRSR Subject 823 CDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSR 1002
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7
Range 1: 6568 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 58/59(98%) | 0/59(0%) | Minus/Plus |
Query 3 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 179 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDE+FIAFTAGVP Subject 6568 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGVP 6744
Range 2: 6566 to 6709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 46/48(96%) | 0/48(0%) | Plus/Minus |
Query 38 PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH 181 PQ*QVLLLNYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**SH Subject 6566 PQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SH 6709
Range 3: 6684 to 6746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.4 bits(87) | 0.0 | 19/21(90%) | 0/21(0%) | Plus/Minus |
Query 1 SGTPAVKAIKLSSSVTSSLIK 63 SGTPAVKA+K SSSVTSSLIK Subject 6684 SGTPAVKAMKFSSSVTSSLIK 6746
Range 4: 6568 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 54/58(93%) | 0/58(0%) | Plus/Minus |
Query 6 NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQSFN*VIHNNH 179 NAGRKGY+ LVLSDKFSY*TTFTTTRN MN+NWKSEHAINTHKLKRRQSFN*VIHNNH Subject 6568 NAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNH 6741
Range 5: 6567 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 25/25(100%) | 0/25(0%) | Minus/Plus |
Query 106 CDYYE*LS*SFVYV*VCGCL*RAQI 180 CDYYE*LS*SFVYV*VCGCL*RAQI Subject 6567 CDYYE*LS*SFVYV*VCGCL*RAQI 6641
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7
Range 1: 6571 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 57/58(98%) | 0/58(0%) | Minus/Plus |
Query 3 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 176 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDESFIAFTAGVP Subject 6571 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVP 6744
Range 2: 6566 to 6706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 41/47(87%) | 0/47(0%) | Plus/Minus |
Query 41 Q*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH 181 Q* LL NYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**S+ Subject 6566 Q**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SN 6706
Range 3: 6684 to 6746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.5 bits(85) | 0.0 | 19/21(90%) | 0/21(0%) | Plus/Minus |
Query 1 SGTPAVKAIKLSSSVTSSLIK 63 SGTPAVKA+KLSSSV SSLIK Subject 6684 SGTPAVKAMKLSSSVMSSLIK 6746
Range 4: 6571 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 48/58(83%) | 0/58(0%) | Plus/Minus |
Query 3 GNAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQSFN*VIHNN 176 GNAGR+ Y+TLV S++ SY TTFTTTRN MN+NWKSEHAINTHKLKRRQSFN*VIHNN Subject 6571 GNAGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN 6744
Range 5: 6570 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 24/24(100%) | 0/24(0%) | Minus/Plus |
Query 106 DYYE*LS*SFVYV*VCGCL*RAQI 177 DYYE*LS*SFVYV*VCGCL*RAQI Subject 6570 DYYE*LS*SFVYV*VCGCL*RAQI 6641
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 3
Range 1: 6574 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 50/57(88%) | 0/57(0%) | Minus/Plus |
Query 3 IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 173 IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF+AFTAGVP Subject 6574 IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVP 6744
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3
Range 1: 6574 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 50/57(88%) | 0/57(0%) | Minus/Plus |
Query 3 IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 173 IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF+AFTAGVP Subject 6574 IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVP 6744
Nucleotide Sequence (147 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
113.3 | 518.7 | 50% | 1.821e-24 | 90% | KX274275.1 | |
111.5 | 491.2 | 50% | 6.487e-24 | 86% | AB277783.1 | |
105.5 | 477.0 | 50% | 4.029e-22 | 90% | AY368590.1 | |
97.3 | 348.7 | 40% | 1.227e-19 | 63% | AF026278.1 | |
96.4 | 206.6 | 32% | 2.316e-19 | 56% | AY881626.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 6535 to 6678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 45/48(94%) | 0/48(0%) | Plus/Minus |
Query 3 FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLIYS 146 FTTTRN MN+NWKSEHAINTH LKRRQSFN*VIHNNHTMPNT*GLIYS Subject 6535 FTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYS 6678
Range 2: 6534 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 35/36(97%) | 0/36(0%) | Minus/Plus |
Query 40 SYRLGLKCLAWCDYYE*LS*SFVYV*DCGCL*RAQI 147 SYRLGLKCLAWCDYYE*LS*SFVYV* CGCL*RAQI Subject 6534 SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 6641
Range 3: 6617 to 6679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 19/21(90%) | 0/21(0%) | Minus/Plus |
Query 2 WVFIACSDFQLSFIVFLVVVK 64 WVFIACSDFQL FI FLVVVK Subject 6617 WVFIACSDFQLLFIAFLVVVK 6679
Range 4: 6535 to 6678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Plus |
Query 3 AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK 146 AID*ALSVWHGVIIMNNLVKALSTFE VGVYSVLRFPVVVHSVPGSGK Subject 6535 AID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGK 6678
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 791 to 934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 44/48(92%) | 0/48(0%) | Plus/Minus |
Query 3 FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLIYS 146 FTTTRN +N+NWKSEHAINTH LKRRQSFN*VIHNNHTMPNT*GLIYS Subject 791 FTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYS 934
Range 2: 791 to 934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 45/48(94%) | 0/48(0%) | Minus/Plus |
Query 3 AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK 146 AID*ALS+WHGVIIMNNLVKALSTFE VG+YSVLRFPVVVHSVPGSGK Subject 791 AID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGK 934
Range 3: 790 to 897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 33/36(92%) | 0/36(0%) | Minus/Plus |
Query 40 SYRLGLKCLAWCDYYE*LS*SFVYV*DCGCL*RAQI 147 SYRLGLK LAWCDYYE*LS*SFVYV* CG L*RAQI Subject 790 SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQI 897
Range 4: 873 to 935 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 18/21(86%) | 0/21(0%) | Minus/Plus |
Query 2 WVFIACSDFQLSFIVFLVVVK 64 WVFIACSDFQL F FLVVVK Subject 873 WVFIACSDFQLLFTAFLVVVK 935
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 6535 to 6678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 43/48(90%) | 0/48(0%) | Plus/Minus |
Query 3 FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLIYS 146 FTTTRN MN+NWKSEHAINTH LKRRQSFN*VIHNN MPNT*GLIYS Subject 6535 FTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYS 6678
Range 2: 6534 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 33/36(92%) | 0/36(0%) | Minus/Plus |
Query 40 SYRLGLKCLAWCDYYE*LS*SFVYV*DCGCL*RAQI 147 SYRLGLKCLA DYYE*LS*SFVYV* CGCL*RAQI Subject 6534 SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQI 6641
Range 3: 6617 to 6679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 19/21(90%) | 0/21(0%) | Minus/Plus |
Query 2 WVFIACSDFQLSFIVFLVVVK 64 WVFIACSDFQL FI FLVVVK Subject 6617 WVFIACSDFQLLFIAFLVVVK 6679
Range 4: 6535 to 6678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 45/48(94%) | 0/48(0%) | Minus/Plus |
Query 3 AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK 146 AID*ALSVWH IIMNNLVKALSTFE VGVYSVLRFPVVVHSVPGSGK Subject 6535 AID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGK 6678
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 6
Range 1: 6535 to 6678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 40/48(83%) | 0/48(0%) | Minus/Plus |
Query 3 AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK 146 AID*ALS+WH + IMNNLVKALSTFE VGV+SVL+FPVV+HSVPGSGK Subject 6535 AID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVLKFPVVIHSVPGSGK 6678
Range 2: 6541 to 6678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 31/46(67%) | 0/46(0%) | Plus/Minus |
Query 3 FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLI 140 FTTTR+TMND WK +H NT+ LK Q FN*+IHN MPNT*GLI Subject 6541 FTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLI 6678
Range 3: 6542 to 6679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 31/46(67%) | 0/46(0%) | Plus/Minus |
Query 2 FYHYQEHYERQLEI*ARYKHPQSQT*TKL*LSYS**SHHAKHLRPN 139 FYHYQ HYE LEI*A KH Q+Q T L*L+YS* S++AK+LRPN Subject 6542 FYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPN 6679
Range 4: 6543 to 6623 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 17/27(63%) | 0/27(0%) | Minus/Plus |
Query 58 LGLKCLAWCDYYE*LS*SFVYV*DCGC 138 LGLK LA +YYE* S*S V +* C C Subject 6543 LGLKYLALFEYYE*FS*SIVNI*VCRC 6623
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 3
Range 1: 6535 to 6678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 38/48(79%) | 0/48(0%) | Minus/Plus |
Query 3 AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK 146 A+D*ALS+WH + IMNNLVKALSTFE +GV+SVL+FPVV+HSVPGSGK Subject 6535 AVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGK 6678
Nucleotide Sequence (598 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
409.3 | 2133.7 | 27% | 2.201e-112 | 89% | KX274275.1 | |
359.8 | 1798.3 | 28% | 1.736e-97 | 76% | AY368590.1 | |
206.8 | 507.5 | 22% | 2.04e-51 | 35% | KR054735.1 | |
185.7 | 402.9 | 23% | 4.484e-45 | 31% | AY368172.2 | |
190.3 | 313.7 | 18% | 1.872e-46 | 51% | KX274274.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8
Range 1: 1567 to 2145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
409.3 bits(887) | 0.0 | 174/193(90%) | 0/193(0%) | Plus/Plus |
Query 9 VPHAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSGSSLSEDCQGFQTVEQAECAHPPNTPNTVI 587 V HAASSLIPLSSDPSFRPSSNEID ALS IKMA GVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGE+SFVELSCGVAKLYKSVI Q LSPDASSGLAKVY+DHSSPQLCSDFHFMSDDELPN ALAND+ SGSSLSED QGFQTVEQAECAHP N ++ Subject 1567 VLHAASSLIPLSSDPSFRPSSNEIDFALSGIKMALGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGETSFVELSCGVAKLYKSVILQVLSPDASSGLAKVYIDHSSPQLCSDFHFMSDDELPNSALANDVISGSSLSEDRQGFQTVEQAECAHPANDAPCIV 2145
Range 2: 1566 to 2126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
381.8 bits(827) | 0.0 | 174/187(93%) | 0/187(0%) | Minus/Minus |
Query 8 FGGWAHSACSTVWXXXXXXXXXXXDVISLARAGFGNSSSDMK*KSEQSCGEE*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAACGT 568 F GWAHSACSTVWNP*+SSDNDDPD+ SLARA FGNSSSDMK*KSEQSCGEE*S YTLAKPDEASGDK C ITDL*SFATPQESSTKE SPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATP+AILI DRA+SISFEDGLKDGSLDNGIRDEAAC T Subject 1566 FAGWAHSACSTVWNP*RSSDNDDPDITSLARAEFGNSSSDMK*KSEQSCGEE*SIYTLAKPDEASGDKTCRITDL*SFATPQESSTKEVSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPKAILIPDRAKSISFEDGLKDGSLDNGIRDEAACST 2126
Range 3: 1571 to 2125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.0 bits(740) | 0.0 | 168/185(91%) | 0/185(0%) | Minus/Minus |
Query 13 LGDGHIQLALRSGILDSLLIMMIQMSYHWLEQDLATHHLT*SENQNKAAGKSDQHIL*LSLMKHLETKLAE*LTCRVLQPXXXXXXXXXXXISKISN*LSA*EETTEGHKNGRT**EPSNV*QALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*KTGH*TMGSEMRLHV 567 L DGHIQLAL+ GILD LLIMMIQ+ +H LEQ+LATHHLT*SENQNKAAGKSDQ+IL*LSLMKHLETK AE*LTCRVLQPHRRAQQ+R HHISKISN*LSA*EETTEGHKNGRT**EP NV* ALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*K GH* MGSEMRLHV Subject 1571 LRDGHIQLALQFGILDGLLIMMIQILHH*LEQNLATHHLT*SENQNKAAGKSDQYIL*LSLMKHLETKPAE*LTCRVLQPHRRAQQKRFHHISKISN*LSA*EETTEGHKNGRT**EPLNV*PALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*KMGH*IMGSEMRLHV 2125
Range 4: 1796 to 2125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 98/110(89%) | 0/110(0%) | Plus/Plus |
Query 238 FVAFSGFFLSRELI*NF*NVVNPPLLSSPVGLQNSTSQLFSKLCLQMLHQA*LKYMLITLPRSFVLIFTSCQMMSCQILL*PMI*HLDHHYQKTVKDSRP*SKLNVPIPQ 567 FVAFSGFFLSRE I*NF*NVV P LLSSPVGLQNSTSQLF + CLQMLHQA*LKY+LITLPRSFVLIFTSCQMMSCQILL* M+*+LDHHYQKTVKDS+ *SKLNVPIPQ Subject 1796 FVAFSGFFLSRESI*NF*NVVKPLLLSSPVGLQNSTSQLFCRFCLQMLHQA*LKYILITLPRSFVLIFTSCQMMSCQILL*LMM*YLDHHYQKTVKDSKL*SKLNVPIPQ 2125
Range 5: 1571 to 1756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 57/62(92%) | 0/62(0%) | Plus/Plus |
Query 13 HMQPHL*SHCLVTRLLGHLQMR*ILLCQRLRWPRVWLDSQIFSDF*LMIFS*MSCKIHTGQG 198 +MQPHL*SH LVT LLGHLQMR*ILLCQ LRWP VWLDSQIFSDF*LMIFS*MSCKIHTGQG Subject 1571 YMQPHL*SHYLVTHLLGHLQMR*ILLCQGLRWPWVWLDSQIFSDF*LMIFS*MSCKIHTGQG 1756
Range 6: 1744 to 2127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.3 bits(540) | 0.0 | 116/128(91%) | 0/128(0%) | Minus/Minus |
Query 186 VWGMGTFSLLYGLESLTVF****SRCHIIG*SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSKP*PV 569 + GMGTFSLLY LESLTVF****SR +II *SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQ+L NN*LVEFCNPTGELNK GFTTFQKFQI+SLLKKKPLKATKMEELSESL MFS+P*PV Subject 1744 ICGMGTFSLLYSLESLTVF****SRYYIIS*SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQNLQNN*LVEFCNPTGELNKRGFTTFQKFQIDSLLKKKPLKATKMEELSESL*MFSQP*PV 2127
Range 7: 1573 to 1704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 39/44(89%) | 0/44(0%) | Minus/Minus |
Query 15 KSEKI*LSSHTRGHLNL*QSRIYLI*RWPKRRVTRQWDQR*GCM 146 KSEKI*LSSHT+GHLN *QS+IYLI*RWPKR VTR WDQR*GCM Subject 1573 KSEKI*LSSHTQGHLNP*QSKIYLI*RWPKRWVTR*WDQR*GCM 1704
Range 8: 1572 to 2039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 146/156(94%) | 0/156(0%) | Plus/Plus |
Query 14 TCSLISDPIV**PVF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAC*TFEGSH*VLPFLWPXXXXXXAES*FEIFEMW*ILLC*ALLWGCKTLQVSYSASFVSRCFIRLS*SIC*SLFPAALF*FSLHVR**VAKSCSS 481 TCSLISDPI+**P+F*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKA *TF+GSH*VLPFLWPSVVSS*AES FEIFEMW* L C*ALLWGCKTLQVSYSA FVSRCFIRLS*SI *SLFPAALF*FSLHVR**VAK CSS Subject 1572 TCSLISDPII**PIF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAG*TFKGSH*VLPFLWPSVVSS*AESQFEIFEMW*NLFC*ALLWGCKTLQVSYSAGFVSRCFIRLS*SIY*SLFPAALF*FSLHVR**VAKFCSS 2039
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8
Range 1: 1567 to 2127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
359.8 bits(779) | 0.0 | 154/187(82%) | 0/187(0%) | Plus/Plus |
Query 9 VPHAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSGSSLSEDCQGFQTVEQAECAHPPN 569 V HAA SL PLSSDPSFRPSSNEI+ LS IKMA GVAGQS LFRFLIDDIF+NEL+ SYRSRLAKHL+ALTKFFHFCGLQWFLLKQR+NLKFLK E+SFVELSCGVAKLYKSVI Q SP+A SGLA+VYVDHSS QLCS HFMSDDELPNPALA+++TS +SLSEDCQGFQTVEQA CAHP N Subject 1567 VLHAALSLFPLSSDPSFRPSSNEINFVLSGIKMALGVAGQSKLFRFLIDDIFINELKLSYRSRLAKHLRALTKFFHFCGLQWFLLKQRINLKFLKGSETSFVELSCGVAKLYKSVILQVSSPNALSGLARVYVDHSSSQLCSGSHFMSDDELPNPALADNITSEASLSEDCQGFQTVEQAACAHPIN 2127
Range 2: 1566 to 2126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
322.3 bits(697) | 0.0 | 151/187(81%) | 0/187(0%) | Minus/Minus |
Query 8 FGGWAHSACSTVWXXXXXXXXXXXDVISLARAGFGNSSSDMK*KSEQSCGEE*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAACGT 568 F GWAH+ACSTVWNP*QSSDND +VI ARAGFGNSSSDMK + EQSC EE*STYTLA+PD+A GD+ C ITDL*SFATPQESSTKE S FKNFK LCLRRNH RPQKWKNLVRA KCLASLDLYE SSF KISSIRNLK FDCPATP+AILI DR + ISFEDGLKDGSLDNG RD+AAC T Subject 1566 FMGWAHAACSTVWNP*QSSDNDASEVILSARAGFGNSSSDMKWEPEQSCEEE*STYTLARPDKAFGDETCKITDL*SFATPQESSTKEVSLPFKNFKFILCLRRNHWRPQKWKNLVRALKCLASLDLYESFSSFMKISSIRNLKSFDCPATPKAILIPDRTKFISFEDGLKDGSLDNGNRDKAACST 2126
Range 3: 1571 to 2125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
284.2 bits(614) | 0.0 | 142/185(77%) | 0/185(0%) | Minus/Minus |
Query 13 LGDGHIQLALRSGILDSLLIMMIQMSYHWLEQDLATHHLT*SENQNKAAGKSDQHIL*LSLMKHLETKLAE*LTCRVLQPXXXXXXXXXXXISKISN*LSA*EETTEGHKNGRT**EPSNV*QALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*KTGH*TMGSEMRLHV 567 L DGH++LAL+ GILDSLLIM Q Y+ LEQDLATHHLT*S +QNKAA KSDQHIL*L L+KHLETKLA+*LTC+VLQPH+R QRR H++SKISN S *EETT GHKNGRT** P N *QALTCM +AHL KYHQSEI*K LTVQPHPRPS*SLTEQNL HLKMA*K *TM +E+RLHV Subject 1571 LWDGHMRLALQFGILDSLLIMTPQK*YYQLEQDLATHHLT*SGSQNKAARKSDQHIL*LGLIKHLETKLAK*LTCKVLQPHKRVLQRRFHYLSKISNLFSV*EETTGGHKNGRT**GPLNA*QALTCMKVSAHL*KYHQSEI*KVLTVQPHPRPS*SLTEQNLFHLKMA*KMDR*TMETEIRLHV 2125
Range 4: 1744 to 2127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 101/128(79%) | 0/128(0%) | Minus/Minus |
Query 186 VWGMGTFSLLYGLESLTVF****SRCHIIG*SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSKP*PV 569 ++GMGT LLY LESLTVF*** R +II *SRIWQLII*HEV RTKLRGRVINIY S*A**SIWR++L NN*LV+FCNPT E KGGFTTFQKFQI SL KKKPL+ATKMEELSE M SKP*PV Subject 1744 IYGMGTCGLLYSLESLTVF***RLRSNIIS*SRIWQLII*HEVGARTKLRGRVINIYSS*A**SIWRRNLQNN*LVKFCNPTREFYKGGFTTFQKFQIYSLFKKKPLEATKMEELSEGP*MLSKP*PV 2127
Range 5: 1573 to 1704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 34/44(77%) | 0/44(0%) | Minus/Minus |
Query 15 KSEKI*LSSHTRGHLNL*QSRIYLI*RWPKRRVTRQWDQR*GCM 146 KSEK *LSSHT+GHLN *Q++IY I*RWPKR + RQW QR*GCM Subject 1573 KSEKF*LSSHTQGHLNP*QNKIYFI*RWPKRWIARQWKQR*GCM 1704
Range 6: 1796 to 2122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 83/109(76%) | 0/109(0%) | Plus/Plus |
Query 238 FVAFSGFFLSRELI*NF*NVVNPPLLSSPVGLQNSTSQLFSKLCLQMLHQA*LKYMLITLPRSFVLIFTSCQMMSCQILL*PMI*HLDHHYQKTVKDSRP*SKLNVPIP 564 FVA SGFFL+RE I*NF* VV PPL +S VGLQN TSQLF K LQML+QA*L+YMLITLPRSFVL TSCQMMSCQILL* +I L HYQKTVKDS+ *SK +VPIP Subject 1796 FVASSGFFLNRE*I*NF*KVVKPPL*NSLVGLQNFTSQLFCKFRLQMLYQA*LEYMLITLPRSFVLAPTSCQMMSCQILL*LIILLLRRHYQKTVKDSKL*SKPHVPIP 2122
Range 7: 1571 to 1756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 47/62(76%) | 0/62(0%) | Plus/Plus |
Query 13 HMQPHL*SHCLVTRLLGHLQMR*ILLCQRLRWPRVWLDSQIFSDF*LMIFS*MSCKIHTGQG 198 +MQP+L HCL LLGHLQM+*IL CQ LRWP VWLDSQ FSDF*LMIFS*MS HTGQG Subject 1571 YMQPYLCFHCLAIHLLGHLQMK*ILFCQGLRWPWVWLDSQNFSDF*LMIFS*MS*NFHTGQG 1756
Range 8: 1572 to 2048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
256.3 bits(553) | 0.0 | 128/159(81%) | 0/159(0%) | Plus/Plus |
Query 14 TCSLISDPIV**PVF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAC*TFEGSH*VLPFLWPXXXXXXAES*FEIFEMW*ILLC*ALLWGCKTLQVSYSASFVSRCFIRLS*SIC*SLFPAALF*FSLHVR**VAKSCSSQ*Y 490 TCSLIS IV* +F*AIFK*++FCSVRD*DGLGCGWTVK+FQISD**YF K*A FIQVKAC* F+G H*VLPFLWP VVSS* E+ FEIFE * LLC LLWGCKTLQVSY ASFVS+CFIR S*SIC*SLF AALF LHVR**VAKSCSS *Y Subject 1572 TCSLISVSIV*RSIF*AIFK*NKFCSVRD*DGLGCGWTVKTFQISD**YFHK*AETFIQVKAC*AFKGPH*VLPFLWPPVVSS*TENKFEIFER**NLLCRTLLWGCKTLQVSYFASFVSKCFIRPS*SIC*SLFLAALFWLPLHVR**VAKSCSS**Y 2048
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 5
Range 1: 1573 to 2058 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.8 bits(445) | 0.0 | 87/162(54%) | 0/162(0%) | Plus/Plus |
Query 15 HAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSG 500 HA SLIPL +DP F+PS EIDSALS +K A + GQS LFRF++DD L +Q++YR RL+ H+KALT+FFH CGLQWFLL +R NL+FL +SSF +LSC VAK+Y V+ Q P+ASSGL +VY+DHS S+ HF + E + A ++ SG Subject 1573 HAVLSLIPLPNDPKFKPSGREIDSALSRVKAALAITGQSKLFRFVVDDTLLRSVQSAYRFRLSSHIKALTEFFHICGLQWFLLCRRANLRFLCDRKSSFADLSCQVAKIYNLVVAQVTLPNASSGLIQVYIDHSRSNKNSNPHFAATGEARDSIEAVNLDSG 2058
Range 2: 1572 to 1973 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 73/134(54%) | 0/134(0%) | Minus/Minus |
Query 14 E*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC 415 E*S T KPD+A G+ C T L* FAT QE S KED +N +L L RRNH*RPQ WKN VRAF C SL Y C+ R++SS NLK DCP +A L D AESIS +GL GSL NGI D AC Subject 1572 E*SM*T*IKPDDALGNVTCATTKL*IFAT*QERSAKEDFRSHRNLRLALRQRRNH*RPQMWKNSVRAFMCEESLKRYALCTLRRRVSSTTNLKSLDCPVIAKAALTRDSAESISLPEGLNLGSLGNGINDNTAC 1973
Range 3: 1588 to 2004 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 49/139(35%) | 0/139(0%) | Minus/Minus |
Query 30 EVKIRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSKP*PVXXXXXXXXXXXXQKSEKI*LSSHTRGHLNL*QSRIYLI*RWPKRRVTRQWDQ 446 +V I +R VIN+ + ** I +L N ++ + TG++ KGG + QK +I S +KKPLK T +E+ SE L + +P + L + +I+ K EK+ LS + + LN Q IY K R+ R WDQ Subject 1588 KVWIGILVRAGVINVNLNQT**CIR*CNLCYNQVINLRHLTGKVGKGGLSVTQKPEIGSPAEKKPLKTTNVEKFSEGLYV*GEPKTICTLHATQKGVIHHKPEKLGLSCNCQSRLNARQC*IYFSAGRLKFRIIR*WDQ 2004
Range 4: 1560 to 1832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 37/91(41%) | 0/91(0%) | Plus/Plus |
Query 2 QVGPTCSLISDPIV**PVF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAC*TFEGSH*VLPFLWPXXXXXXAES 274 Q C ++ DPI ** *A + +RF +V * G G T+++FQ+ *+ * A+ I A T +G H*+ P LW SVVSS ES Subject 1560 QSNTACGVVIDPIT**S*I*AFRQRNRFSTVSR*GGFGNYRTIQAFQVCGG*HPSA*RAECISF*ALLTHKGPH*IFPHLWSSVVSSLPES 1832
Rupestris stem pitting associated virus isolate RSPaV PN, complete genome
Sequence ID: AY368172.2 Length: 8743 Number of Matches: 4
Range 1: 1579 to 2019 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 82/147(56%) | 0/147(0%) | Plus/Plus |
Query 21 ASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDE 461 A SLIPL +DP+FRP+S EI+ +L I+MA QS LF FL++ ++E+Q Y+++LA+HLKALT FFHFCGLQWFLL +R NLKFL +SSF +L C VAKLY VI QA++P A SGL KVYV S+PQ S+ + D E Subject 1579 ALSLIPLPNDPAFRPTSEEINFSLLSIRMALESTRQSKLFGFLVNSALISEMQKKYKTKLAQHLKALTWFFHFCGLQWFLLSKRANLKFLGECKSSFADLDCNVAKLYNLVITQAIAPRALSGLIKVYVGSSNPQQKSNPQTIFDGE 2019
Range 2: 1572 to 1979 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 70/136(51%) | 0/136(0%) | Minus/Minus |
Query 14 GEE*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC 421 G E T TL KPD+A G A IT L*S AT Q S KED KN +L L L RNH*RPQK KN V AFKC AS LY FC S + + K FDC AIL+ R + IS E GL GS +GI+D A C Subject 1572 GLELPT*TLIKPDKALGAIA*VITKL*SLATLQSRSAKEDLHSPKNLRLALLLSRNH*RPQK*KNQVSAFKCWASFVLYFFCISLMRALFTKKPKSFDCLVDSRAILMLKREKLISSEVGLNAGSFGSGIKDRATC 1979
Range 3: 1756 to 1995 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 33/80(41%) | 0/80(0%) | Minus/Minus |
Query 198 IRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSK 437 +R L R NI F+* **S R SL N +VEF + ++ KGG T QKF+++SL ++PLK +M++ SE Q+ + Subject 1756 VRFLLGIRTANIDFN*T**SSRRNSLSYNQIVEFGDVAIKICKGGLTFTQKFEVSSLT*QEPLKTAEMKKPSECFQVLGE 1995
Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome
Sequence ID: KX274274.1 Length: 8725 Number of Matches: 2
Range 1: 1573 to 1983 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.3 bits(409) | 0.0 | 76/137(55%) | 0/137(0%) | Plus/Plus |
Query 15 HAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQ 425 H A SL+PLS+DP F+ + E+DSALS ++MA G+ GQS LF FL++D +NE+Q Y+ RLAKHLK+LT +FHFCG QWFLL +RVNLKFL +SSF +L C VA++Y+ V Q +P GL KVY +S+PQ Subject 1573 HVALSLVPLSNDPFFKLTPREVDSALSSVRMALGITGQSKLFGFLVNDTLINEMQRRYKLRLAKHLKSLTWYFHFCGCQWFLLNRRVNLKFLGDRKSSFADLDCNVAQIYRLVSAQVTAPGVLLGLTKVYAHYSNPQ 1983
Range 2: 1572 to 1892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 55/107(51%) | 0/107(0%) | Minus/Minus |
Query 14 ATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC 334 AT Q S KED +N +LTL +RNH*+PQKWK V FKCLASL+LY C S ++S + K DCP P AIL +RAES S LK GS D G +D A C Subject 1572 ATLQSRSAKEDFRSPRNLRLTLRFKRNH*QPQKWKYQVSDFKCLASLNLYLLCISLMRVSFTKKPKSLDCPVIPRAILTLERAESTSLGVSLKKGSFDKGTKDRATC 1892
Nucleotide Sequence (120 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
96.4 | 426.1 | 24% | 2.089e-19 | 90% | AB277783.1 | |
96.4 | 409.4 | 18% | 2.089e-19 | 90% | KX274275.1 | |
94.1 | 394.9 | 18% | 1.022e-18 | 85% | AY368590.1 | |
91.8 | 161.8 | 36% | 5.003e-18 | 79% | KX958435.1 | |
91.3 | 258.2 | 32% | 6.873e-18 | 53% | AB277787.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 1265 to 1381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 39/39(100%) | 0/39(0%) | Plus/Plus |
Query 2 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR 118 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR Subject 1265 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR 1381
Range 2: 1264 to 1383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.6 bits(197) | 0.0 | 40/40(100%) | 0/40(0%) | Minus/Minus |
Query 1 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 120 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI Subject 1264 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 1383
Range 3: 1266 to 1382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 35/39(90%) | 0/39(0%) | Minus/Minus |
Query 3 LVPHKEV*NRNYARLLNQLPPCQSKLAHPQHPTQMANL* 119 LVPHKEV*NRNYA+ LNQLPPCQSK AHPQHPTQMA+L* Subject 1266 LVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHPTQMASL* 1382
Range 4: 1265 to 1381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 35/39(90%) | 0/39(0%) | Minus/Minus |
Query 2 SYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN 118 SYLTRKFEIGIMR *INCLLAKAN HTLNIQLKWR CN Subject 1265 SYLTRKFEIGIMRSR*INCLLAKANQHTLNIQLKWRACN 1381
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5
Range 1: 7009 to 7125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 39/39(100%) | 0/39(0%) | Plus/Plus |
Query 2 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR 118 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR Subject 7009 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR 7125
Range 2: 7010 to 7126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 35/39(90%) | 0/39(0%) | Minus/Minus |
Query 3 LVPHKEV*NRNYARLLNQLPPCQSKLAHPQHPTQMANL* 119 L PHKEV*N+NYA+ LNQLPPCQSKLAHPQHPTQMANL* Subject 7010 LAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHPTQMANL* 7126
Range 3: 7008 to 7127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.6 bits(197) | 0.0 | 40/40(100%) | 0/40(0%) | Minus/Minus |
Query 1 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 120 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI Subject 7008 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 7127
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 5
Range 1: 7009 to 7125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 38/39(97%) | 0/39(0%) | Plus/Plus |
Query 2 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR 118 ITGSPFELDVEGVLICFGKEAV+LAAAHNSDFKLPCEVR Subject 7009 ITGSPFELDVEGVLICFGKEAVNLAAAHNSDFKLPCEVR 7125
Range 2: 7008 to 7127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.0 bits(191) | 0.0 | 39/40(98%) | 0/40(0%) | Minus/Minus |
Query 1 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 120 PRTSQGSLKSELCAAAK TASLPKQISTPSTSNSNGEPVI Subject 7008 PRTSQGSLKSELCAAAKLTASLPKQISTPSTSNSNGEPVI 7127
Range 3: 7009 to 7125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 34/39(87%) | 0/39(0%) | Minus/Minus |
Query 2 SYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN 118 SYLTRKFEI IMR C +NCLLAKAN*HTLNIQLKW TCN Subject 7009 SYLTRKFEI*IMRSCQVNCLLAKAN*HTLNIQLKW*TCN 7125
Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome
Sequence ID: KX958435.1 Length: 8743 Number of Matches: 2
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 4
Range 1: 1265 to 1381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 36/39(92%) | 0/39(0%) | Plus/Plus |
Query 2 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR 118 + GSPFELDVEGVLICFGKEAVDLA AHNSDFKLPCEVR Subject 1265 VIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVR 1381
Range 2: 1267 to 1383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.6 bits(162) | 0.0 | 30/39(77%) | 0/39(0%) | Minus/Minus |
Query 4 PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPV 120 PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+SNG+P+ Subject 1267 PRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPI 1383
Nucleotide Sequence (133 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
103.6 | 442.4 | 33% | 1.425e-21 | 80% | AB277783.1 | |
103.1 | 384.9 | 33% | 1.948e-21 | 73% | AY368590.1 | |
102.2 | 441.1 | 33% | 3.643e-21 | 87% | KX274275.1 | |
97.7 | 149.6 | 25% | 8.307e-20 | 75% | AB277787.1 | |
97.7 | 149.6 | 25% | 8.307e-20 | 75% | AY881627.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 905 to 1036 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.6 bits(223) | 0.0 | 44/44(100%) | 0/44(0%) | Minus/Plus |
Query 1 VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP 132 VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP Subject 905 VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP 1036
Range 2: 944 to 1036 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.2 bits(157) | 0.0 | 29/31(94%) | 0/31(0%) | Plus/Minus |
Query 1 WLDVPPREVGSVGNAGRKGYKTLVLSDKFSY 93 WL+VPPREVGSVGNAGRKGY+TLVLSDKFSY Subject 944 WLNVPPREVGSVGNAGRKGYETLVLSDKFSY 1036
Range 3: 906 to 965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 16/20(80%) | 0/20(0%) | Plus/Minus |
Query 72 PQ*QVLLLNYFYHYQEHYER 131 PQ*QVLLLN FYHYQE E+ Subject 906 PQ*QVLLLNCFYHYQERCEQ 965
Range 4: 904 to 1029 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 37/42(88%) | 0/42(0%) | Minus/Plus |
Query 8 CRS*CSW*W*K*FNKRTCH*GREFYSLYGRRSRHSQPLWEVH 133 C S SW*W*K FNKRTCH*GREF+SLYGRRSRHSQPLWEVH Subject 904 CCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSRHSQPLWEVH 1029
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 6649 to 6780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.1 bits(222) | 0.0 | 43/44(98%) | 0/44(0%) | Minus/Plus |
Query 1 VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP 132 VVHSVPGSGKSSLIREL+TEDESFIAFTAGVPDTPNLSGRYIKP Subject 6649 VVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKP 6780
Range 2: 6684 to 6779 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.9 bits(138) | 0.0 | 29/32(91%) | 0/32(0%) | Plus/Minus |
Query 2 GLMYLPERLGVSGTPAVKAIKLSSSVTSSLIK 97 GLMYLPER GVSGTPAVKA+KLSSSV SSLIK Subject 6684 GLMYLPERFGVSGTPAVKAMKLSSSVMSSLIK 6779
Range 3: 6650 to 6706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 14/19(74%) | 0/19(0%) | Plus/Minus |
Query 75 Q*QVLLLNYFYHYQEHYER 131 Q* LL NYFYHYQE YE+ Subject 6650 Q**ALLSNYFYHYQERYEQ 6706
Range 4: 6648 to 6779 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 32/44(73%) | 0/44(0%) | Minus/Plus |
Query 2 CRS*CSW*W*K*FNKRTCH*GREFYSLYGRRSRHSQPLWEVHQA 133 C S* SW*W*K*F+KR +* REF+S +GRRSRHS+P WEVHQA Subject 6648 CCS*RSW*W*K*FDKRAHY*RREFHSFHGRRSRHSKPFWEVHQA 6779
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 6649 to 6780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.2 bits(220) | 0.0 | 43/44(98%) | 0/44(0%) | Minus/Plus |
Query 1 VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP 132 VVHSVPGSGKSSLIRELVTEDE+FIAFTAGVPDTPNLSGRYIKP Subject 6649 VVHSVPGSGKSSLIRELVTEDENFIAFTAGVPDTPNLSGRYIKP 6780
Range 2: 6648 to 6779 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 39/44(89%) | 0/44(0%) | Minus/Plus |
Query 2 CRS*CSW*W*K*FNKRTCH*GREFYSLYGRRSRHSQPLWEVHQA 133 C S* SW*W*K*FNKRTCH*GREF+SLYGRRS H+QPLWEVHQA Subject 6648 CCS*RSW*W*K*FNKRTCH*GREFHSLYGRRS*HTQPLWEVHQA 6779
Range 3: 6684 to 6779 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.6 bits(144) | 0.0 | 30/32(94%) | 0/32(0%) | Plus/Minus |
Query 2 GLMYLPERLGVSGTPAVKAIKLSSSVTSSLIK 97 GLMYLPERLGVSGTPAVKA+K SSSVTSSLIK Subject 6684 GLMYLPERLGVSGTPAVKAMKFSSSVTSSLIK 6779
Range 4: 6650 to 6709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 18/20(90%) | 0/20(0%) | Plus/Minus |
Query 72 PQ*QVLLLNYFYHYQEHYER 131 PQ*QVLLLNYFYHYQE YE+ Subject 6650 PQ*QVLLLNYFYHYQERYEQ 6709
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 2
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 2
Nucleotide Sequence (103 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
77.1 | 188.9 | 33% | 1.309e-13 | 85% | AB277783.1 | |
75.8 | 284.5 | 52% | 3.401e-13 | 88% | KX274275.1 | |
76.7 | 131.8 | 36% | 1.799e-13 | 76% | AY368590.1 | |
73.0 | 117.6 | 28% | 2.283e-12 | 72% | AB277787.1 | |
73.0 | 117.6 | 28% | 2.283e-12 | 72% | AY881627.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 3
Range 1: 890 to 988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 33/33(100%) | 0/33(0%) | Plus/Plus |
Query 1 LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT 99 LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT Subject 890 LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT 988
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5
Range 1: 6634 to 6732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 32/33(97%) | 0/33(0%) | Plus/Plus |
Query 1 LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT 99 LRFPVVVHSVPGSGKSSLIRELVTEDE+FIAFT Subject 6634 LRFPVVVHSVPGSGKSSLIRELVTEDENFIAFT 6732
Range 2: 6638 to 6736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 30/33(91%) | 0/33(0%) | Minus/Minus |
Query 5 RS*RL*NSRPQ*QVLLLNYFYHYQEHYERQLEI 103 R *RL*NSRPQ*QVLLLNYFYHYQE YE+QLEI Subject 6638 RP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI 6736
Range 3: 6634 to 6735 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.3 bits(103) | 0.0 | 30/34(88%) | 0/34(0%) | Minus/Minus |
Query 1 GRKGYKTLVLSDKFSYXXXXXXXXXTMNDNWKSE 102 GRKGY+ LVLSDKFSY*TTFTTTRN MN+NWKSE Subject 6634 GRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSE 6735
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 2
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 2
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 2
Nucleotide Sequence (199 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
149.1 | 664.8 | 54% | 5.536e-35 | 89% | AB277783.1 | |
148.6 | 696.2 | 54% | 7.605e-35 | 91% | KX274275.1 | |
141.7 | 605.0 | 51% | 8.915e-33 | 67% | AY368590.1 | |
135.3 | 419.1 | 12% | 7.131e-31 | 58% | AB277788.1 | |
135.3 | 425.1 | 14% | 7.131e-31 | 58% | KR054734.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 806 to 1000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.1 bits(319) | 0.0 | 62/65(95%) | 0/65(0%) | Plus/Plus |
Query 3 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 197 LS+WHGVIIMNNLVKALSTFEFVG+YSVLRFP VVHSVPGSGKSSLIRELVTEDESFIAFTAGVP Subject 806 LSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 1000
Range 2: 806 to 1000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 59/65(91%) | 0/65(0%) | Minus/Minus |
Query 3 GNAGRKGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 197 GNAGRKGY+TLVLSDKFSY*T FTTTRN +N++WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* Subject 806 GNAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 1000
Range 3: 805 to 1002 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 59/66(89%) | 0/66(0%) | Plus/Plus |
Query 2 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIXXXXXXXXXXX*K*FNKRTCH*GREFYSLYGRRSR 199 LK LAWCDYYE*LS*SFVYV*VCG L*RAQISSC S SW*W*K FNKRTCH*GREF+SLYGRRSR Subject 805 LKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSR 1002
Range 4: 804 to 965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 48/54(89%) | 0/54(0%) | Minus/Minus |
Query 1 PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR 162 PQ*QVLLLN FYHYQE E+QLEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LR Subject 804 PQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLR 965
Range 5: 805 to 1002 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 62/66(94%) | 0/66(0%) | Minus/Minus |
Query 2 SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK 199 SGTPAVKA+KLSSSVTSSLIKLLLPLPGTL*TT GNLSTL* PTNSNVDKALTKLFIIITPCQ LK Subject 805 SGTPAVKAMKLSSSVTSSLIKLLLPLPGTL*TTTGNLSTL*IPTNSNVDKALTKLFIIITPCQILK 1002
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7
Range 1: 6550 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 63/65(97%) | 0/65(0%) | Plus/Plus |
Query 3 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 197 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP VVHSVPGSGKSSLIRELVTEDE+FIAFTAGVP Subject 6550 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGVP 6744
Range 2: 6548 to 6709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 52/54(96%) | 0/54(0%) | Minus/Minus |
Query 1 PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR 162 PQ*QVLLLNYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR Subject 6548 PQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR 6709
Range 3: 6550 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 59/64(92%) | 0/64(0%) | Minus/Minus |
Query 3 NAGRKGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 194 NAGRKGY+ LVLSDKFSY*TTFTTTRN MN++WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* Subject 6550 NAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 6741
Range 4: 6549 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 31/31(100%) | 0/31(0%) | Plus/Plus |
Query 2 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 94 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI Subject 6549 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 6641
Range 5: 6675 to 6743 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 22/23(96%) | 0/23(0%) | Plus/Plus |
Query 128 *K*FNKRTCH*GREFYSLYGRRS 196 *K*FNKRTCH*GREF+SLYGRRS Subject 6675 *K*FNKRTCH*GREFHSLYGRRS 6743
Range 6: 6549 to 6746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 63/66(95%) | 0/66(0%) | Minus/Minus |
Query 2 SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK 199 SGTPAVKA+K SSSVTSSLIKLLLPLPGTL*TT GNLSTL*TPTNSNVDKALTKLFIIITPCQTLK Subject 6549 SGTPAVKAMKFSSSVTSSLIKLLLPLPGTL*TTTGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK 6746
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7
Range 1: 6550 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 61/65(94%) | 0/65(0%) | Plus/Plus |
Query 3 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 197 LSVWH IIMNNLVKALSTFEFVGVYSVLRFP VVHSVPGSGKSSLIREL+TEDESFIAFTAGVP Subject 6550 LSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVP 6744
Range 2: 6550 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 52/65(80%) | 0/65(0%) | Minus/Minus |
Query 3 GNAGRKGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 197 GNAGR+ Y+TLV S++ SY TTFTTTRN MN++WKSEHAINTHKLKRRQSFN*VIHNN MPNT* Subject 6550 GNAGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT* 6744
Range 3: 6548 to 6706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 46/53(87%) | 0/53(0%) | Minus/Minus |
Query 1 Q*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR 159 Q* LL NYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**S++AKHLR Subject 6548 Q**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLR 6706
Range 4: 6549 to 6746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 61/66(92%) | 0/66(0%) | Minus/Minus |
Query 2 SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK 199 SGTPAVKA+KLSSSV SSLIKLLLPLPGTL*TT GNLSTL*TPTNSNVDKALTKLFIII CQTLK Subject 6549 SGTPAVKAMKLSSSVMSSLIKLLLPLPGTL*TTTGNLSTL*TPTNSNVDKALTKLFIII**CQTLK 6746
Range 5: 6549 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 29/31(94%) | 0/31(0%) | Plus/Plus |
Query 2 LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 94 LKCLA DYYE*LS*SFVYV*VCGCL*RAQI Subject 6549 LKCLALLDYYE*LS*SFVYV*VCGCL*RAQI 6641
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1
Sequence ID: AB277788.1 Length: 2876 Number of Matches: 5
Range 1: 806 to 1000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 55/65(85%) | 0/65(0%) | Plus/Plus |
Query 3 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 197 LSVWHGV IMNNLVKALS FEFVGV+ VL+FP VVHSVPGSGKSSLIREL++EDE+F+AFTAGVP Subject 806 LSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVP 1000
Range 2: 805 to 1002 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 56/66(85%) | 0/66(0%) | Minus/Minus |
Query 2 SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK 199 SGTPAVKA K SSS SSLI+LLLPLPGTL*TT GNLST TPTNSN DKALTKLFII+TPCQTLK Subject 805 SGTPAVKATKASSSEMSSLIRLLLPLPGTL*TTTGNLSTQNTPTNSNADKALTKLFIILTPCQTLK 1002
Range 3: 804 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 35/48(73%) | 0/48(0%) | Minus/Minus |
Query 1 LLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR 144 LL YFYHY EH E+QLEI* Q QT TKL*LSYS* SHHAKHLR Subject 804 LLGYFYHYLEHCEQQLEI*VHKTRQQIQTQTKL*LSYS*YSHHAKHLR 947
Range 4: 806 to 985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 35/60(58%) | 0/60(0%) | Minus/Minus |
Query 3 KGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 182 +G+K+LV ++ Y* TFTTT NT+N++WK ++ + +K KRRQSF+*VIHN HTMPNT* Subject 806 EGHKSLVFRNELPY*ATFTTTWNTVNNNWKFKYTKHANKFKRRQSFD*VIHNTHTMPNT* 985
Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome
Sequence ID: KR054734.1 Length: 8753 Number of Matches: 5
Range 1: 6550 to 6744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 55/65(85%) | 0/65(0%) | Plus/Plus |
Query 3 LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP 197 LSVWHGV IMNNLVKALS FEFVGV+ VL+FP VVHSVPGSGKSSLIREL++EDE+F+AFTAGVP Subject 6550 LSVWHGVSIMNNLVKALSAFEFVGVFRVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVP 6744
Range 2: 6549 to 6746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 56/66(85%) | 0/66(0%) | Minus/Minus |
Query 2 SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK 199 SGTPAVKA K SSS SSLI+LLLPLPGTL*TT GNLST TPTNSN DKALTKLFII+TPCQTLK Subject 6549 SGTPAVKATKASSSEMSSLIRLLLPLPGTL*TTTGNLSTRNTPTNSNADKALTKLFIILTPCQTLK 6746
Range 3: 6548 to 6691 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 35/48(73%) | 0/48(0%) | Minus/Minus |
Query 1 LLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR 144 LL Y YHY EH E+QLEI* H Q QT TKL*LSYS* SHHAKHLR Subject 6548 LLGYSYHYLEHCEQQLEI*VHETHQQIQTQTKL*LSYS*YSHHAKHLR 6691
Range 4: 6550 to 6729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 35/60(58%) | 0/60(0%) | Minus/Minus |
Query 3 KGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT* 182 +G+K+LV ++ Y* T TTT NT+N++WK ++ +T+K KRRQSF+*VIHN HTMPNT* Subject 6550 EGHKSLVFRNELPY*ATLTTTWNTVNNNWKFKYTKHTNKFKRRQSFD*VIHNTHTMPNT* 6729
Nucleotide Sequence (171 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
125.7 | 586.6 | 19% | 3.392e-28 | 89% | AB277783.1 | |
125.7 | 542.7 | 19% | 3.392e-28 | 62% | AY368590.1 | |
124.8 | 603.2 | 19% | 6.401e-28 | 89% | KX274275.1 | |
117.5 | 163.9 | 42% | 1.029e-25 | 56% | AY881626.1 | |
117.5 | 117.5 | 33% | 1.029e-25 | 84% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8
Range 1: 827 to 997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 54/57(95%) | 0/57(0%) | Minus/Plus |
Query 1 IIMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV 171 IIMNNLVK LSTFEFVG+YSVLRFPVVVHSVPG GKSSLIRELVTEDESFIAFTAGV Subject 827 IIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGV 997
Range 2: 828 to 995 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 50/56(89%) | 0/56(0%) | Plus/Minus |
Query 3 RRP*RL*NSRPQ*QVLLLNYFYHHQEHYERQLEI*ARYKHPQTQT*TKL*LSYS** 170 RRP*RL*NSRPQ*QVLLLN FYH+QE E+QLEI*ARYK+PQTQT*TKL*LSYS** Subject 828 RRP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS** 995
Range 3: 827 to 997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 51/57(89%) | 0/57(0%) | Plus/Minus |
Query 1 NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQNFN*VIHNN 171 NAGRKGY+TLVLSDKFSY*T FTTTRN +N+NWKSEHAINTHKLKRRQ+FN*VIHNN Subject 827 NAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNN 997
Range 4: 828 to 995 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 50/56(89%) | 0/56(0%) | Minus/Plus |
Query 3 LL*IT*LKFCLRLSLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPA 170 LL*IT*LK CLRLSLWVFIACSDFQL F FLVVVK V**ENLSLRTRV *PLRPA Subject 828 LL*IT*LKLCLRLSLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS*PLRPA 995
Range 5: 934 to 996 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 19/21(90%) | 0/21(0%) | Minus/Plus |
Query 2 K*FNKRTCH*GREFYSLYGRR 64 K FNKRTCH*GREF+SLYGRR Subject 934 KQFNKRTCH*GREFHSLYGRR 996
Range 6: 829 to 897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 22/23(96%) | 0/23(0%) | Minus/Plus |
Query 101 YYE*LS*SFVYV*VCGCL*RAQI 169 YYE*LS*SFVYV*VCG L*RAQI Subject 829 YYE*LS*SFVYV*VCGYL*RAQI 897
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8
Range 1: 6571 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 54/57(95%) | 0/57(0%) | Minus/Plus |
Query 1 IIMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV 171 IIMNNLVK LSTFEFVGVYSVLRFPVVVHSVPG GKSSLIREL+TEDESFIAFTAGV Subject 6571 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGV 6741
Range 2: 6572 to 6739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 48/56(86%) | 0/56(0%) | Plus/Minus |
Query 3 RRP*RL*NSRPQ*QVLLLNYFYHHQEHYERQLEI*ARYKHPQTQT*TKL*LSYS** 170 RRP*+L*NSR Q* LL NYFYH+QE YE+QLEI*ARYKHPQTQT*TKL*LSYS** Subject 6572 RRP*KL*NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS** 6739
Range 3: 6571 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 46/57(81%) | 0/57(0%) | Plus/Minus |
Query 1 NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQNFN*VIHNN 171 NAGR+ Y+TLV S++ SY TTFTTTRN MN+NWKSEHAINTHKLKRRQ+FN*VIHNN Subject 6571 NAGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN 6741
Range 4: 6572 to 6739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 46/56(82%) | 0/56(0%) | Minus/Plus |
Query 3 LL*IT*LKFCLRLSLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPA 170 LL*IT*LK CLRLSLWVFIACSDFQL FI FLVVVKVV**E+ L+TRV * RPA Subject 6572 LL*IT*LKLCLRLSLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS*LSRPA 6739
Range 5: 6573 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 23/23(100%) | 0/23(0%) | Minus/Plus |
Query 101 YYE*LS*SFVYV*VCGCL*RAQI 169 YYE*LS*SFVYV*VCGCL*RAQI Subject 6573 YYE*LS*SFVYV*VCGCL*RAQI 6641
Range 6: 6678 to 6740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 13/21(62%) | 0/21(0%) | Minus/Plus |
Query 2 K*FNKRTCH*GREFYSLYGRR 64 K*F+KR +* REF+S +GRR Subject 6678 K*FDKRAHY*RREFHSFHGRR 6740
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8
Range 1: 6571 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 54/57(95%) | 0/57(0%) | Minus/Plus |
Query 1 IIMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV 171 IIMNNLVK LSTFEFVGVYSVLRFPVVVHSVPG GKSSLIRELVTEDE+FIAFTAGV Subject 6571 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGV 6741
Range 2: 6572 to 6739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 53/56(95%) | 0/56(0%) | Plus/Minus |
Query 3 RRP*RL*NSRPQ*QVLLLNYFYHHQEHYERQLEI*ARYKHPQTQT*TKL*LSYS** 170 RRP*RL*NSRPQ*QVLLLNYFYH+QE YE+QLEI*ARYKHPQTQT*TKL*LSYS** Subject 6572 RRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS** 6739
Range 3: 6571 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 52/57(91%) | 0/57(0%) | Plus/Minus |
Query 1 NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQNFN*VIHNN 171 NAGRKGY+ LVLSDKFSY*TTFTTTRN MN+NWKSEHAINTHKLKRRQ+FN*VIHNN Subject 6571 NAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN 6741
Range 4: 6572 to 6739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 51/56(91%) | 0/56(0%) | Minus/Plus |
Query 3 LL*IT*LKFCLRLSLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPA 170 LL*IT*LK CLRLSLWVFIACSDFQL FI FLVVVKVV**ENLSLRTR+ *PLRPA Subject 6572 LL*IT*LKLCLRLSLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS*PLRPA 6739
Range 5: 6573 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 23/23(100%) | 0/23(0%) | Minus/Plus |
Query 101 YYE*LS*SFVYV*VCGCL*RAQI 169 YYE*LS*SFVYV*VCGCL*RAQI Subject 6573 YYE*LS*SFVYV*VCGCL*RAQI 6641
Range 6: 6678 to 6740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 20/21(95%) | 0/21(0%) | Minus/Plus |
Query 2 K*FNKRTCH*GREFYSLYGRR 64 K*FNKRTCH*GREF+SLYGRR Subject 6678 K*FNKRTCH*GREFHSLYGRR 6740
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 2
Range 1: 6574 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 47/56(84%) | 0/56(0%) | Minus/Plus |
Query 1 IMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV 168 IMNNLVK LSTFEF+GV+SVL+FPVV+HSVPG GKSSLIREL++EDESF+AFTAGV Subject 6574 IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGV 6741
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 1
Range 1: 6574 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 47/56(84%) | 0/56(0%) | Minus/Plus |
Query 1 IMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV 168 IMNNLVK LSTFEF+GV+SVL+FPVV+HSVPG GKSSLIREL++EDESF+AFTAGV Subject 6574 IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGV 6741
Nucleotide Sequence (248 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
185.7 | 1012.6 | 33% | 9.545e-46 | 90% | KX274275.1 | |
185.3 | 871.0 | 33% | 1.311e-45 | 77% | AY368590.1 | |
166.9 | 588.5 | 28% | 4.316e-40 | 49% | AY881627.1 | |
166.5 | 502.5 | 31% | 5.929e-40 | 45% | AY368172.2 | |
165.6 | 607.3 | 29% | 1.119e-39 | 46% | KX274276.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 3337 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 75/82(91%) | 0/82(0%) | Plus/Minus |
Query 3 MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQSQ 248 MI*LQTQNST*RPLIFPKLPA LIFWCY++QS MVPNAE*GNHFIFC+SIF+KLLPYGWARKS INW*FTFHERPYSCLQSQ Subject 3337 MI*LQTQNST*RPLIFPKLPAHLIFWCYNNQSHMVPNAE*GNHFIFCVSIFTKLLPYGWARKSWINW*FTFHERPYSCLQSQ 3582
Range 2: 3337 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 77/82(94%) | 0/82(0%) | Minus/Plus |
Query 3 LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 248 LALKAGIRSFVESESPVD ALS PTIRKQLGENAYAENEMIALFCVRHH RLIIITPEYE SWKFGENE PLCGILCLKSNH Subject 3337 LALKAGIRSFVESESPVDPALSGPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNH 3582
Range 3: 3338 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.6 bits(390) | 0.0 | 77/82(94%) | 0/82(0%) | Plus/Minus |
Query 2 NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLPSKP 247 NDLTSNTKFHIEA+HFPQTSSSPHILVL**SVSHGA*RRIRQSFHFL KHF QVASVWLG KEL+QLVIHFPRTTLFLPSKP Subject 3338 NDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLRKHFHQVASVWLGPKELDQLVIHFPRTTLFLPSKP 3583
Range 4: 3339 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 74/82(90%) | 0/82(0%) | Minus/Plus |
Query 1 GFEGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKSF 246 GFEGRNKVVRGK*ITS* SSF PNHTEATW KCL RK*NDCLILR*AP ETD++NTRI*GELEVWGK* ASMWNFVFEVKSF Subject 3339 GFEGRNKVVRGK*ITS*SSSFGPNHTEATW*KCLRRK*NDCLILR*APCETDYYNTRI*GELEVWGK*VASMWNFVFEVKSF 3584
Range 5: 3339 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 75/82(91%) | 0/82(0%) | Plus/Minus |
Query 1 K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA 246 K*FDFKHKIPHRG SFSPNFQL+SYSGV++ISL+WCLTQNKAIISFSA*AFSPSCFRMVG ERA STGDSLSTNDLIPAFKA Subject 3339 K*FDFKHKIPHRGHSFSPNFQLTSYSGVIIISLTWCLTQNKAIISFSA*AFSPSCFRMVGPERAGSTGDSLSTNDLIPAFKA 3584
Range 6: 3338 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 75/82(91%) | 0/82(0%) | Minus/Plus |
Query 2 WL*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXLPYSALGTMRD*SS*HQNMRRAGSLGKMRGLYVEFCV*SQII 247 WL*RQE*GRSWKVNHQLIQLFRAQPYGSNL KML QKMK*LPYSALGTM D* *HQNMR AGSLGKM GLYVEFCV*SQII Subject 3338 WL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVKMLTQKMK*LPYSALGTM*D*LL*HQNMR*AGSLGKMSGLYVEFCV*SQII 3583
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 3337 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 77/82(94%) | 0/82(0%) | Minus/Plus |
Query 3 LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 248 LALKAGIRSFVESESPVD ALS+PTIRKQLGENAYAENEMIALFCVRHH RLIIITPEYE SWKFGENE PLCGILCLKSNH Subject 3337 LALKAGIRSFVESESPVDPALSNPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNH 3582
Range 2: 3342 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 64/81(79%) | 0/81(0%) | Minus/Plus |
Query 1 FEGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKSF 243 FEG NKVV GK*IT * SSF+PN+TEATW KCLCRK*NDCLIL *A ETDH+N RI* ELEVWG+* ASMWNFVF+V+SF Subject 3342 FEGGNKVVCGK*ITG*SSSFKPNYTEATW*KCLCRK*NDCLILC*ASCETDHYNARI*SELEVWGE*MASMWNFVFKVQSF 3584
Range 3: 3341 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 66/81(81%) | 0/81(0%) | Plus/Minus |
Query 2 NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLPSK 244 ND T NTKFHIEA H PQTSSS HIL L**SVSH A* RIRQSFHFLHKHF QVASV LG KEL+Q VIHFP+TTLF PSK Subject 3341 NDWTLNTKFHIEAIHSPQTSSSLHILAL**SVSHDA*HRIRQSFHFLHKHFHQVASV*LGLKELDQPVIHFPQTTLFPPSK 3583
Range 4: 3339 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 73/82(89%) | 0/82(0%) | Plus/Minus |
Query 1 K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA 246 K* DFKHKIPHRG SFSPNFQL+SYSGV+MISL+ CLTQNKAIISFSA*AFSPSCFR+VG ERA STGDSLSTNDLIPAFKA Subject 3339 K*LDFKHKIPHRGHSFSPNFQLTSYSGVIMISLT*CLTQNKAIISFSA*AFSPSCFRIVGFERAGSTGDSLSTNDLIPAFKA 3584
Range 5: 3340 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 62/81(77%) | 0/81(0%) | Plus/Minus |
Query 3 MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQS 245 MI L TQNST*RP I PKLPA IFW Y+DQS M+PN E*GNHFIFCISIF+KLLPY W KS IN *FTFH+RPYS LQS Subject 3340 MIGL*TQNST*RPFILPKLPAHFIFWRYNDQSHMMPNTE*GNHFIFCISIFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS 3582
Range 6: 3341 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 64/81(79%) | 0/81(0%) | Minus/Plus |
Query 2 L*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXLPYSALGTMRD*SS*HQNMRRAGSLGKMRGLYVEFCV*SQII 244 L*R+E*GR WKVNH+LIQLF+ Q YGSNL KMLMQKMK*LPYS LG M D*S * QNM+ AGSLG+M GLYVEFCV*S II Subject 3341 L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVKMLMQKMK*LPYSVLGIM*D*SL*RQNMK*AGSLGRMNGLYVEFCV*SPII 3583
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 7
Range 1: 3337 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 68/82(83%) | 0/82(0%) | Minus/Plus |
Query 3 LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 248 LALKAGIRSFVESE V +LS+PTI KQLGEN YAENEMIALFC+RHH RLI+ITPEYE SWKFGE+E PLCGILCLKSNH Subject 3337 LALKAGIRSFVESECLVSPSLSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNH 3582
Range 2: 3339 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 60/82(73%) | 0/82(0%) | Plus/Minus |
Query 1 K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA 246 K*FD + +IPHRG S SPNFQL+SYSGV+ ISL+WCL QNKAIISFSA* FSPSC MVG ER T SLST D IPAFKA Subject 3339 K*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPSCL*MVGAERLGLTRHSLSTKDRIPAFKA 3584
Range 3: 3345 to 3581 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 39/79(49%) | 0/79(0%) | Minus/Plus |
Query 4 EGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKS 240 +G + G+*+ S NH++ T R+CLCR+*+DCLIL *AP E D +TRI* +LEVWG+* A MWN + +KS Subject 3345 KGWYSIFCGE*MPSKSKPLSSNHSQTTGRECLCRE*DDCLILH*APCEADSDHTRI*SQLEVWGE*VAPMWNSLS*IKS 3581
Range 4: 3347 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 39/79(49%) | 0/79(0%) | Plus/Minus |
Query 2 NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLP 238 +DL + +FHI A+H PQTS+ HILV S SHGA* +IRQS H HKH L V WL + L+ L IH P+ + P Subject 3347 SDLI*DKEFHIGATHSPQTSN*LHILV*SLSASHGA*CKIRQSSHSRHKHSLPVVCEWLELRGLDLLGIHSPQKIEYQP 3583
Range 5: 3403 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 34/60(57%) | 0/60(0%) | Plus/Minus |
Query 3 MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWA 182 +I* +T+NST* PL PKLP IFWC Q MVPNA+*GNH I I+I S+L GW+ Subject 3403 VI*FKTKNST*GPLTLPKLPTDFIFWCDHYQPHMVPNAK*GNHLILGINILSQLFVNGWS 3582
Rupestris stem pitting associated virus isolate RSPaV PN, complete genome
Sequence ID: AY368172.2 Length: 8743 Number of Matches: 5
Range 1: 3337 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 69/82(84%) | 0/82(0%) | Minus/Plus |
Query 3 LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 248 LALKAGIRSFVESES DS+LSSP + KQLGE+AYAENEMIALFC+RH RLIIITPEYE SWKFGE+E PLCGILCLKSNH Subject 3337 LALKAGIRSFVESESLADSSLSSPAVLKQLGEDAYAENEMIALFCIRHQVRLIIITPEYEVSWKFGESEWPLCGILCLKSNH 3582
Range 2: 3339 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 59/82(72%) | 0/82(0%) | Plus/Minus |
Query 1 K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA 246 K*FDFKH++PH+G S SPNFQL+SYSGV++I+L+WCL QNKAIISFSA*A SPSCF+ G ++ ES DSLST D IPAFKA Subject 3339 K*FDFKHRMPHKGHSLSPNFQLTSYSGVIIINLTWCLIQNKAIISFSA*ASSPSCFKTAGEDKDESARDSLSTKDRIPAFKA 3584
Range 3: 3337 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 40/82(49%) | 0/82(0%) | Plus/Minus |
Query 3 MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQSQ 248 MI* Q QN+ RPL FPKLP IF ++Q +VPN + G H I CISIF+KLL W + *I TF++RPY+ S+ Subject 3337 MI*FQAQNAAQRPLAFPKLPTYFIFRGDNNQPHLVPNTKQGYHLILCISIFTKLL*NCWRGQR*IRKGLTFNKRPYTSF*SE 3582
Range 4: 3417 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 30/56(54%) | 0/56(0%) | Minus/Plus |
Query 1 EATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKSF 168 +ATW +CLCR+*+D L+L *AP E D+++ I* +LEVWGK A + + V E+KSF Subject 3417 KATW*RCLCRE*DDSLVLY*APSEVDYYHP*I*SKLEVWGKRVAFVRHSVLEIKSF 3584
Range 5: 3353 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 35/77(45%) | 0/77(0%) | Plus/Minus |
Query 2 NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLF 232 NDL S+T+ +A+ FPQTS+ HI **S S GA* + R S H LHKH QVA L ++N HF + T++ Subject 3353 NDLISSTECRTKATRFPQTSNLLHIQG***STSLGA*YKTRLSSHSLHKHLHQVALKLLERTKMNPQGTHFQQKTVY 3583
Grapevine rupestris stem pitting associated virus isolate SK704 C, complete genome
Sequence ID: KX274276.1 Length: 8726 Number of Matches: 7
Range 1: 3338 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 69/82(84%) | 0/82(0%) | Minus/Plus |
Query 3 LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 248 LALKAGIRSFVESE V S LS+PTI KQL ENAYAENEMIALFCVRHH RLI++TPEYE SWKFGE+E PLCGILCLKSNH Subject 3338 LALKAGIRSFVESERLVSSDLSAPTISKQLEENAYAENEMIALFCVRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNH 3583
Range 2: 3340 to 3585 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 56/82(68%) | 0/82(0%) | Plus/Minus |
Query 1 K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA 246 K* DF+ +IPHRG S SPNFQL+SYSGV ISL+WC TQN AIISFSA*AFS +C +VG ER+E T SLST D +PAF+A Subject 3340 K*LDFRQRIPHRGHSLSPNFQLTSYSGVTTISLTWCRTQNNAIISFSA*AFSSNCLEIVGAERSELTRRSLSTKDRMPAFRA 3585
Range 3: 3338 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 44/82(54%) | 0/82(0%) | Plus/Minus |
Query 3 MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQSQ 248 +I LQ +NST*RPL FPK P IFWCY Q +VP+ +* NHFIF I I +L W+ K * N FTFHER + LQS+ Subject 3338 VIGLQAKNST*RPLTFPKFPTNFIFWCYHYQPYVVPDTK*CNHFIFSIGILLQLFRNSWS*KI*TNQAFTFHERSNAGLQSK 3583
Range 4: 3346 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 44/79(56%) | 0/79(0%) | Minus/Plus |
Query 4 EGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKS 240 EGR+ + RGK* *F SF N+ +CLC K*NDC+IL AP + D NTRI* LE+WGK* ASMWN + EV+S Subject 3346 EGRHSIFRGK*TPG*FRSFSSNYF*TIGGECLC*K*NDCIILCPAPRKADSGNTRI*S*LEIWGK*VASMWNSLPEVQS 3582
Range 5: 3342 to 3584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 39/81(48%) | 0/81(0%) | Plus/Minus |
Query 2 NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLPSK 244 +D TS +FHIEA+HFPQ S+ HILVL S GA +I QSFHF H+H + L K+LN +HFPR PS+ Subject 3342 SDWTSGKEFHIEATHFPQISN*LHILVLPLSALRGAGHKIMQSFHFQHRHSPPIV*K*LELKDLN*PGVHFPRKIECRPSE 3584
Nucleotide Sequence (250 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
198.1 | 1136.8 | 34% | 1.861e-49 | 94% | AB277783.1 | |
196.7 | 1118.0 | 34% | 4.826e-49 | 91% | KX274275.1 | |
187.1 | 1039.7 | 34% | 3.804e-46 | 84% | AY368590.1 | |
164.6 | 749.2 | 46% | 2.112e-39 | 68% | AF026278.1 | |
161.0 | 737.2 | 46% | 2.681e-38 | 66% | AF057136.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 1364 to 1612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.1 bits(426) | 0.0 | 78/83(94%) | 0/83(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 249 LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA RHRKKLIIMQ*NAFSA CELGQNYHPIDDWLGHWL A+FPKKVKFAILR Subject 1364 LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLSASFPKKVKFAILR 1612
Range 2: 1365 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.1 bits(426) | 0.0 | 83/83(100%) | 0/83(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 250 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG Subject 1365 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 1613
Range 3: 1364 to 1612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 82/83(99%) | 0/83(0%) | Minus/Minus |
Query 1 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 249 PEYGKFDFLRK STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK Subject 1364 PEYGKFDFLRK*STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 1612
Range 4: 1365 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 80/83(96%) | 0/83(0%) | Minus/Minus |
Query 2 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE 250 P*VWQI*LS*EM+H ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HLVPHKE Subject 1365 P*VWQI*LS*EMKH*ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKE 1613
Range 5: 1366 to 1611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 77/82(94%) | 0/82(0%) | Plus/Plus |
Query 3 SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ 248 SL*GTRCYI*CCYLIEIKGSD R**ALVLHCC+KT*KEIDHHAVKCLFS+LRIGPKLSPH*RLAWALA C IS*ESQICHTQ Subject 1366 SL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALA*CFIS*ESQICHTQ 1611
Range 6: 1366 to 1611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.2 bits(387) | 0.0 | 77/82(94%) | 0/82(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 248 LSMANLTFLGN A SQCPSQSSMG**FWPNSQ AEKAFHCMMINFFLCL AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG Subject 1366 LSMANLTFLGNEALSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQG 1611
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 7108 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 81/83(98%) | 0/83(0%) | Minus/Minus |
Query 1 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 249 PEYGKFDFLRKCSTKPMP PIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRK Subject 7108 PEYGKFDFLRKCSTKPMPTPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRK 7356
Range 2: 7108 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 76/83(92%) | 0/83(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 249 LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA RHRKKLIIMQ*NAFSA CELGQNYHP+DDW GHWLGAAF KKVKFAI R Subject 7108 LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPVDDWRGHWLGAAFSKKVKFAIFR 7356
Range 3: 7109 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 81/83(98%) | 0/83(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 250 FLVR EVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIG+GIGLVLHFLRKSNLPYSG Subject 7109 FLVRCEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGVGIGLVLHFLRKSNLPYSG 7357
Range 4: 7110 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.1 bits(389) | 0.0 | 75/82(91%) | 0/82(0%) | Plus/Plus |
Query 3 SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ 248 SL*G RCYI*CCYLIEIKGSD R**ALVLHCC+KT*KEIDHHAVKCLFS+LRIGPKLSP *RLAWALAWCCI *ESQICH Q Subject 7110 SL*GARCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPR*RLAWALAWCCIF*ESQICHIQ 7355
Range 5: 7109 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 77/83(93%) | 0/83(0%) | Minus/Minus |
Query 2 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE 250 P*+WQI*LS*+MQHQANA ANRQ GDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HL PHKE Subject 7109 P*IWQI*LS*KMQHQANAHANRQRGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKE 7357
Range 6: 7110 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 75/82(91%) | 0/82(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 248 L+MANLTFL NAAPSQCP QSS G**FWPNSQ AEKAFHCMMINFFLCL AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG Subject 7110 LNMANLTFLENAAPSQCPRQSSTG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQG 7355
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 7108 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.1 bits(402) | 0.0 | 78/83(94%) | 0/83(0%) | Minus/Minus |
Query 1 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK 249 PEYGKFDFLRKCSTKPMPKPIVNGV VLAQFAGC*KGISLHDDQ L MSCCSNVEPVLII GRI *FQ*GNNIKCSTSYLTRK Subject 7108 PEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRK 7356
Range 2: 7109 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 78/83(94%) | 0/83(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 250 FLVRYEVLHLMLLPY*NQ IRP MISTGSTLLQQDI R+*SSCSEMPFQQPANWAKT+TPLTIGLGIGLVLHFLRKSNLPYSG Subject 7109 FLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSG 7357
Range 3: 7108 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 73/83(88%) | 0/83(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 249 LPCEVRG TFDVVTLLKSRDPT DDKHWFYIAA RHRKKLIIMQ*+AFSA CELGQN + IDD LGHWLGAAFPKKVKFA+LR Subject 7108 LPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*DAFSATCELGQNCYSIDDRLGHWLGAAFPKKVKFAVLR 7356
Range 4: 7110 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.7 bits(364) | 0.0 | 73/82(89%) | 0/82(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 248 LS ANLTFLGNAAPSQCPS SSM * FWPNSQ AEKA HCMMINFFLCL AAM*NQCLSS VGSLDFNKVTTSNV PRTSQG Subject 7110 LSTANLTFLGNAAPSQCPSLSSME*QFWPNSQVAEKASHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQG 7355
Range 5: 7110 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 69/82(84%) | 0/82(0%) | Plus/Plus |
Query 3 SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ 248 SL*GTR YI*CCYLIEIK SD **ALVLHCC+KT*+E+DHHAV+CLFS+LRIGPKL H*R AWALAWCCIS*ESQIC TQ Subject 7110 SL*GTRYYI*CCYLIEIKRSDL***ALVLHCCNKT*EEVDHHAVRCLFSNLRIGPKLLLH*R*AWALAWCCIS*ESQICRTQ 7355
Range 6: 7109 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 72/83(87%) | 0/83(0%) | Minus/Minus |
Query 2 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE 250 P*V QI*LS*EMQHQANAQA RQW +SFGPIRRLLKRH TA**S S YVLLQQCRTSAYH+ SD LISIR*QHQM*+LVPHKE Subject 7109 P*VRQI*LS*EMQHQANAQAYRQWSNSFGPIRRLLKRHLTA**STSSYVLLQQCRTSAYHQRSDLLISIR*QHQM*YLVPHKE 7357
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 6
Range 1: 7108 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 63/83(76%) | 0/83(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 249 LPCEVRG+TF+VVTLLKSRDPTP+D+HWFYIAA RHR+KLIIMQ*+AFSAACELG+N++ ID WLGHW AAFP++VK + R Subject 7108 LPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFPEEVKSTLFR 7356
Range 2: 7109 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 61/83(73%) | 0/83(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 250 +LV+ EV L +*NQ I+P I TG TLL QD RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG Subject 7109 YLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG 7357
Range 3: 7110 to 7355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 58/82(71%) | 0/82(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 248 L+ +LT GNAA +QCPSQ SM F PNSQAAEKA +CM+INF LCL AAM*NQCLSSGVGSLDF +VTT V P TSQG Subject 7110 LNKVDLTSSGNAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQG 7355
Range 4: 7111 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 56/82(68%) | 0/82(0%) | Minus/Minus |
Query 4 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTR 249 PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ ++K TS TR Subject 7111 PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR 7356
Range 5: 7155 to 7343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 47/63(75%) | 0/63(0%) | Plus/Plus |
Query 48 EIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQI 236 EIK S+PR *ALVLHCC KT EID+HAV+CLFSSLRIG K H*+LAWAL CCIS* SQI Subject 7155 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIS*GSQI 7343
Range 6: 7154 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/68(68%) | 0/68(0%) | Minus/Minus |
Query 47 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS 250 P*+ I*L EMQH+ NAQAN QW F PIRRLLKRH TA* SIS VL QQC+TSAY G D LIS Subject 7154 P*IR*I*LPQEMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7357
Rupestris stem pitting associated virus 1, complete genome
Sequence ID: AF057136.1 Length: 8744 Number of Matches: 6
Range 1: 7109 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 62/83(75%) | 0/83(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 249 LPCEVRG+TF+VVTLLKSRDPTP+D+HWFYIAA RHR+KLIIMQ*+AFSAACELG+N++ ID WLGHW AAF ++VK + R Subject 7109 LPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFR 7357
Range 2: 7110 to 7358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 61/83(73%) | 0/83(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 250 +LV+ EV L +*NQ I+P I TG TLL QD RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG Subject 7110 YLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG 7358
Range 3: 7112 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 56/82(68%) | 0/82(0%) | Minus/Minus |
Query 4 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTR 249 PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ ++K TS TR Subject 7112 PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR 7357
Range 4: 7111 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 57/82(70%) | 0/82(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 248 L+ +LT NAA +QCPSQ SM F PNSQAAEKA +CM+INF LCL AAM*NQCLSSGVGSLDF +VTT V P TSQG Subject 7111 LNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQG 7356
Range 5: 7156 to 7344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 46/63(73%) | 0/63(0%) | Plus/Plus |
Query 48 EIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQI 236 EIK S+PR *ALVLHCC KT EID+HAV+CLFSSLRIG K H*+LAWAL CCI * SQI Subject 7156 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQI 7344
Range 6: 7155 to 7358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 45/68(66%) | 0/68(0%) | Minus/Minus |
Query 47 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS 250 P*+ I*L +MQH+ NAQAN QW F PIRRLLKRH TA* SIS VL QQC+TSAY G D LIS Subject 7155 P*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7358
Nucleotide Sequence (145 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
112.9 | 595.2 | 48% | 2.506e-24 | 89% | AB277783.1 | |
112.9 | 574.6 | 48% | 2.506e-24 | 85% | KX274275.1 | |
111.0 | 271.7 | 35% | 8.928e-24 | 49% | AB277787.1 | |
111.0 | 258.4 | 35% | 8.928e-24 | 45% | AB277788.1 | |
111.0 | 272.2 | 35% | 8.928e-24 | 51% | KX274277.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6
Range 1: 1328 to 1471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 46/48(96%) | 0/48(0%) | Plus/Plus |
Query 2 VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH 145 VDLAAAHNSDFKLP EVRGATFDVVTLLKSRDPT DDKHWFYIAATRH Subject 1328 VDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRH 1471
Range 2: 1327 to 1470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Minus |
Query 1 CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST 144 CLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST Subject 1327 CLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST 1470
Range 3: 1328 to 1471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 44/48(92%) | 0/48(0%) | Minus/Minus |
Query 2 MSCCSNVEPVLIIGGWIP*FQ*GNNIKCSTSYLSRKFEIGIMRGC*IN 145 MSCCSNVEPVLIIGG IP*FQ*GNNIKCSTSYL+RKFEIGIMR *IN Subject 1328 MSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*IN 1471
Range 4: 1329 to 1469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 43/47(91%) | 0/47(0%) | Plus/Plus |
Query 3 LI*QPRIIPISNFLERYEVLHLMLLPY*NQGIQPPMISTGSTLLQQD 143 LI*+ RIIPISNFL RYEVLHLMLLPY*NQGI+PPMISTGSTLLQQD Subject 1329 LI*RLRIIPISNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQD 1469
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 7072 to 7215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 46/48(96%) | 0/48(0%) | Plus/Plus |
Query 2 VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH 145 VDLAAAHNSDFKLP EVRGATFDVVTLLKSRDPT DDKHWFYIAATRH Subject 7072 VDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRH 7215
Range 2: 7071 to 7214 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 47/48(98%) | 0/48(0%) | Minus/Minus |
Query 1 CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST 144 CLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST Subject 7071 CLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST 7214
Range 3: 7072 to 7215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 42/48(88%) | 0/48(0%) | Minus/Minus |
Query 2 MSCCSNVEPVLIIGGWIP*FQ*GNNIKCSTSYLSRKFEIGIMRGC*IN 145 MSCCSNVEPVLIIGG IP*FQ*GNNIKCSTS+L+RKFEI IMR *IN Subject 7072 MSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*IN 7215
Range 4: 7073 to 7213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 40/47(85%) | 0/47(0%) | Minus/Minus |
Query 3 VLLQQCRTSAYHRGLDPLISIR*QHQM*HLVPLKEV*NRNYARLLNQ 143 VLLQQCRTSAYHR DPLISIR*QHQM*HL P KEV*N+NYA+ LNQ Subject 7073 VLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQ 7213
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 3
Range 1: 1328 to 1471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 43/48(90%) | 0/48(0%) | Plus/Plus |
Query 2 VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH 145 VDLA AHNSDFKLP EVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRH Subject 1328 VDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRH 1471
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1
Sequence ID: AB277788.1 Length: 2876 Number of Matches: 3
Range 1: 1328 to 1471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 43/48(90%) | 0/48(0%) | Plus/Plus |
Query 2 VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH 145 VDLA AHNSDFKLP EVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRH Subject 1328 VDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRH 1471
Grapevine rupestris stem pitting associated virus isolate SK30, complete genome
Sequence ID: KX274277.1 Length: 8724 Number of Matches: 3
Range 1: 7072 to 7215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 43/48(90%) | 0/48(0%) | Plus/Plus |
Query 2 VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH 145 VDLA AHNSDFKLP EVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRH Subject 7072 VDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRH 7215