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Nucleotide Sequence (621 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
63
126
189
252
315
378
441
504
567
621

Descriptions

Alignments

Rosellinia necatrix partitivirus 2 CP gene for capsid protein, complete cds

Sequence ID: Length: 1828 Number of Matches: 1

Range 1: 381 to 758 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 37/126(29%) 0/126(0%) Plus/Plus
Query        3  HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIPKK  380
                H+ I   +  + + F+P+A M+ +I+  M   L  +   +  +P Y  L +R Y+ I+F +QTLRA+  +  L   +  +L  FL  +   +LPI  PL+  F ++ +  P   QY +V P +P++
Subject    381  HMTIQYASRKKNNTFLPSAFMMMYIIHEMNVLLCEHFYFKREAPNYHPLLLRTYFGILFIIQTLRAQHAANNLFGDQFEFLEKFLDAYPVDTLPIPAPLIHIFKSLCSSRPEIPQYGYVTPFVPEE  758

Sophora japonica powdery mildew-associated partitivirus isolate HBJZ1510 putative coat protein gene, complete cds

Sequence ID: Length: 1918 Number of Matches: 1

Range 1: 438 to 809 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 33/124(27%) 0/124(0%) Plus/Plus
Query        3  HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIP  374
                H   P       S FVP     F +LF M E+L  +  ++ + P YF+  +  Y ++IF +Q LRA+E +G + + E + L+  ++ +      +  P++ +  ++ +V P+D  Y ++ P  P
Subject    438  HFGFPPVTHPATSTFVPWCGNFFSVLFFMGESLCNSTLVQESIPDYFTPVLYWYGSMIFILQILRAREAAGAITRDERTVLQMIIKTYPLEQWTVLSPMIGFLQSLGSVKPTDPMYSWICPAFP  809

Arabidopsis halleri partitivirus 1 genomic RNA, segment 2, complete sequence

Sequence ID: Length: 1763 Number of Matches: 1

Range 1: 403 to 738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 35/112(31%) 0/112(0%) Plus/Plus
Query       39  SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIP  374
                S + P+  M+ +IL ++  TL  N   +  +P Y    +R+Y+ ++F+VQ LRA      +      +L+ FL      SL I GPL+  F  + +  P    Y  VYP IP
Subject    403  SHYYPSCHMMDYILHSINSTLCDNYYFKRETPNYHPYILRLYFGVLFWVQCLRAGNDVQVINDLHYDFLQRFLDCNPLESLAIPGPLLGLFKTLCSSQPEFPHYGKVYPRIP  738

Sclerotinia sclerotiorum partitivirus S segment 2, complete genome

Sequence ID: Length: 1852 Number of Matches: 2

Range 1: 450 to 776 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 36/109(33%) 0/109(0%) Plus/Plus
Query       39  SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYP  365
                S + P+   ++ +L  M + +  N  LR   P Y      +YY IIF +Q LRA + +  L +A+  +LR F   F    LP+AGPLV +F N+    P  +++ +V P
Subject    450  STYTPSCWSMYAVLDAMHDLVGDNASLRRFCPYYHVALSNIYYGIIFIIQVLRANQVANNLSQADFQFLRFFESNFALEELPVAGPLVLFFQNLAAFKPDGNRFNWVVP  776

Range 2: 804 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 18/57(32%) 0/57(0%) Plus/Plus
Query      411  GQRLPNVTSAHYLIPSVPIIASLLKDFCTTPTIGNSKFDDDGNYIPFQLTVGGTFAG  581
                G   P V +    +P +P + SLL  F  +     +  D  G + PF    GGT AG
Subject    804  GANSPRVNAQSTALPQLPQMISLLNLFGASNAALLTAMDTAGQWEPFTFAAGGTIAG  974

Black grass cryptic virus 2 segment RNA 2

Sequence ID: Length: 1956 Number of Matches: 2

Range 1: 544 to 759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 22/72(31%) 0/72(0%) Plus/Plus
Query      159  VYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIP  374
                + +A++  VQ LRA++ +G L  ++  +L++F+ +    ++ I GPL+P+F +I +  P    +  V P IP
Subject    544  IVFAVLAIVQVLRAQQLAGLLTPSQNRFLKSFIGKHPLETIIIPGPLLPFFRSISSANPGFGNFGDVTPVIP  759

Range 2: 406 to 468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 9/21(43%) 0/21(0%) Plus/Plus
Query       27  FDEKSFFVPNALMLFHILFNM  89
                F + + F+PN ++LFH L  M
Subject    406  FPDPNMFIPNFVILFHNLATM  468