Nucleotide Sequence (334 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine satellite virus isolate AUD46129, complete sequence
Range 1: 635 to 958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 102/108(94%) | 0/108(0%) | Plus/Plus |
Query 1 RDNSTPMKDLVFFMRKANFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDANSIKNKIIVRNFDLM*VRVGAIRPNTP 324 RDNSTPMKDLVFFMRK NFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCD NSIKNKIIVRNFDLM*VRVG R N+P Subject 635 RDNSTPMKDLVFFMRKVNFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDTNSIKNKIIVRNFDLM*VRVGVCRLNSP 958
Range 2: 635 to 958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 94/108(87%) | 0/108(0%) | Minus/Minus |
Query 1 GCVWTNCAHPDSH*VKISYNNLILNTIRVTETAKCYQL*EFITYR*RISNAI*KFFTLITKIEGDADVSTVPPPTDIVGHHKIVNIVIDEVCLSHEKY*IFHGCAVIS 324 G V T AHPDSH*+KISYNNLIL TIRVTETAKCYQL*EFITYR*RISN I*KFFT I KIEG+ DVSTVP PTDI+GHHKIVNIVIDEV LSHEKY*IFHGCAVIS Subject 635 G*VKTTYAHPDSH*IKISYNNLILYTIRVTETAKCYQL*EFITYR*RISNTI*KFFTFIAKIEGNTDVSTVPTPTDIMGHHKIVNIVIDEVYLSHEKY*IFHGCAVIS 958
Range 3: 637 to 948 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 93/104(89%) | 0/104(0%) | Plus/Plus |
Query 3 R*QHTHERSSIFHEKGKLRR*RCLRFCDGPLCQLGVVRWKHRHHLRFW**V*RIFKSRY*SVSGK**ILTVDSI*PSL*RE*Y*E*DYCKKF*LNVSPGGRNSS 314 R*QHTHER SIFHEKGKLRR*RCLRFCDGPLCQLG+VRWKHR++LRFW *+*RIFKS Y*SVSGK**ILTVDSI*PSL* E*Y E*DYCKKF* NVSPGGR SS Subject 637 R*QHTHERFSIFHEKGKLRR*RCLRFCDGPLCQLGLVRWKHRYYLRFWQ*M*RIFKSCY*SVSGK**ILTVDSI*PSL*HE*YKE*DYCKKF*FNVSPGGRMSS 948
Range 4: 636 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 92/104(88%) | 0/104(0%) | Minus/Minus |
Query 2 DELRPPGLTLSQNFLQXXXXXXXSRHRDG*MLSTVRIYYLPLTDQ*RDLKILYTYYQNRR*CRCFHRTTPN*HSGPSQNRKHRHRRSLPFS*KILDLSWVCCYL 313 D++RPPGLTL+QNFLQ*SYS YYS HRDG*MLSTVRIYYLPLTDQ* DLKILY Y QNRR* RCFHRT PN*H+GPSQNRKHRHRRSLPFS*KIL+LSWVCCYL Subject 636 DDIRPPGLTLNQNFLQ*SYSLYYSCHRDG*MLSTVRIYYLPLTDQ*HDLKILYIYCQNRR*YRCFHRTNPN*HNGPSQNRKHRHRRSLPFS*KILNLSWVCCYL 947
Range 5: 637 to 957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 96/107(90%) | 0/107(0%) | Minus/Minus |
Query 3 GVFGRIAPTRTHIKSKXXXXXXXXXXFASQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVMPMFPPYHPQLT*WAIXXXXXXXXXKFAFLMKNTRSFMGVLLS 323 G R PTRTHIKSKFLTIILF ILF SQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKV+PMFPPY PQLT*WAITKS*TSSSTKF FLMKNT+SFMGVLLS Subject 637 GELRRHTPTRTHIKSKFLTIILFFILFVSQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVIPMFPPYQPQLT*WAITKS*TSSSTKFTFLMKNTKSFMGVLLS 957
Range 6: 636 to 875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.1 bits(319) | 0.0 | 72/80(90%) | 0/80(0%) | Plus/Plus |
Query 2 EITAHP*KI*YFS*ERQTSSMTMFTIL*WPTMSVGGGTVETSASPSILVISVKNF*IALLIRQR*VINSHS**HLAVSVT 241 EITAHP*KI*YFS*ER TSSMTMFTIL*WP MSVG GTVETS PSIL I+VKNF*I LLIRQR*VINSHS**HLAVSVT Subject 636 EITAHP*KI*YFS*ER*TSSMTMFTIL*WPIMSVGVGTVETSVLPSILAINVKNF*IVLLIRQR*VINSHS**HLAVSVT 875