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Queries

Nucleotide Sequence (415 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
415

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
263.2 1353.7 30% 9.213e-70 74% NC_016509

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 7

Range 1: 1439 to 1804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.2 bits(568) 0.0 116/122(95%) 0/122(0%) Plus/Plus
Query       50  LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK  415
                L D+QGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGEL+YGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK
Subject   1439  LWDIQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELFYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK  1804

Range 2: 1424 to 1804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 105/127(83%) 0/127(0%) Minus/Minus
Query       35  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ  415
                LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQP PILI++ QL+R+LTSK+ VRKRHVN  RQPPP*N HIVP NF+RY D  PFNETKN  LT TPVAGQQPLVTKF GEKTLPLNIP*P  TQ
Subject   1424  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPTPILITIKQLTRVLTSKEQVRKRHVNTHRQPPP*NAHIVPYNFKRYGDNCPFNETKNIPLT*TPVAGQQPLVTKFRGEKTLPLNIP*PPRTQ  1804

Range 3: 1422 to 1802 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.8 bits(517) 0.0 102/127(80%) 0/127(0%) Plus/Plus
Query       33  CWVCLG*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS  413
                C V  G G+FKGNVFSP+NFVTSGC*PATGV VR  FFVSLKG  S YL KL GTIC FYGGGCLW FTWRFLT  LDVR R SC   ISIG GC+WQF*TATIFWPALSRAVLVCGS*SECCALTS
Subject   1422  CCVRGGYGIFKGNVFSPRNFVTSGC*PATGVQVRGMFFVSLKGQLSPYLLKL*GTICAFYGGGCLWVFTWRFLTCSLDVRTRVSCFMVISIGVGCSWQF*TATIFWPALSRAVLVCGS*SECCALTS  1802

Range 4: 1438 to 1803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 115/122(94%) 0/122(0%) Minus/Minus
Query       49  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS  414
                LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASC+QHQYLSP* SSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT LLPELQSRVNNHL*QNFGVKKHCP* S S
Subject   1438  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCNQHQYLSP*NSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLLPELQSRVNNHL*QNFGVKKHCP*ISHS  1803

Range 5: 1422 to 1751 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 81/110(74%) 0/110(0%) Minus/Minus
Query       33  RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLAQTHPT  362
                RKSRPKDCCRSELP A +TNTY   TA P PHI*+ SEEAPRK P+AASAIE AYRT *L EV+R   LQRNKK  SY NSSRGSTTTCDKI G*KNIALE+P+A  + T
Subject   1422  RKSRPKDCCRSELPAATNTNTYHHKTAHPCPHI*RASEEAPRKHPQAASAIERAYRTL*LQEVRR*LPLQRNKKHTSYLNSSRGSTTTCDKISG*KNIALEYPIAAPNAT  1751

Range 6: 1438 to 1668 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 59/77(77%) 0/77(0%) Plus/Plus
Query       49  AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG  279
                A G SRAMFFHP+ILSQVVVDPRLEF *E+ FLFR*R   R TS SY VRYA SMAEAA G LRGASSL  *M*G+G
Subject   1438  AMGYSRAMFFHPEILSQVVVDPRLEFR*EVCFLFR*RGSYRRTS*SYKVRYARSMAEAACGCLRGASSLAL*M*GHG  1668

Range 7: 1711 to 1803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 31/31(100%) 0/31(0%) Plus/Plus
Query      322  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  414
                GSSERQQSFGRLFRELY*CAEVEANAAL*RQ
Subject   1711  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  1803

Nucleotide Sequence (327 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
327

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
235.2 1279.5 28% 1.62e-61 88% NC_016509
152.7 198.2 34% 1.109e-36 55% NC_003604
121.6 121.6 33% 2.657e-27 54% NC_018458
118.4 118.4 32% 2.454e-26 48% NC_004667
75.8 113.0 27% 5.692e-19 41% NC_022072

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 7

Range 1: 5331 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 95/107(89%) 0/107(0%) Plus/Minus
Query        3  SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RML  323
                SPGS R HHHHPEDARQ LPSYSTAL*SEPDHSNL *QR HQMCSISHHQHETRS*HPFCTSVSSND +SHPISVPPEAHQAL S PDSRANHHYR  FGCTC RML
Subject   5331  SPGSSRRHHHHPEDARQSLPSYSTAL*SEPDHSNLR*QRSHQMCSISHHQHETRS*HPFCTSVSSNDHNSHPISVPPEAHQALYSNPDSRANHHYRHTFGCTCCRML  5651

Range 2: 5327 to 5653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.5 bits(488) 0.0 104/109(95%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                +VAF+SK SRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGE+VEHLLGDGDVFVMSPGM
Subject   5327  DVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGM  5653

Range 3: 5332 to 5652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.0 bits(487) 0.0 97/107(91%) 0/107(0%) Minus/Plus
Query        2  SILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD  322
                SILQQVQPK+ L*WWFARESG+E SA**ASGGTEIG*EL SLLDTEVQKGCYDRVSC***EMLHIWC+RCH KFEWSGSL*SAVE*DGR CRASSG*W*C+R+EPGD
Subject   5332  SILQQVQPKVCL*WWFARESGLE*SA**ASGGTEIG*EL*SLLDTEVQKGCYDRVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGD  5652

Range 4: 5330 to 5653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.8 bits(482) 0.0 95/108(88%) 0/108(0%) Plus/Minus
Query        1  HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECY  324
                HPRAH+E ITITQKMLDNLSRLIRPHSKASLTIQIY DNA+TRCVAFLIISMKPDRSTL VLLYQAMI+ LIQFQFLPKLIKRF+P+LTRVRTTIID+ SA LA ECY
Subject   5330  HPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKPDRSTLSVLLYQAMIITLIQFQFLPKLIKRFIPTLTRVRTTIIDIPSAVLAVECY  5653

Range 5: 5331 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 96/107(90%) 0/107(0%) Minus/Plus
Query        3  *HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG  323
                *HS+AS AE  SIMVVRTRVR G KRLMSFGRN*NWMR  IIA*YRST+RVLRSGFMLMMRNATHLV*ALS *I*MVRLALECGRIRRERLSSIFWVMVM S**ARG
Subject   5331  *HSTASTAEGMSIMVVRTRVRVGIKRLMSFGRN*NWMRVMIIA*YRSTERVLRSGFMLMMRNATHLV*ALSP*I*MVRLALECGRIRRERLSSIFWVMVMSS**ARG  5651

Range 6: 5455 to 5652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 64/66(97%) 0/66(0%) Plus/Minus
Query        2  IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  199
                IPGLIT TSPSPRRCST SPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ
Subject   5455  IPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  5652

Range 7: 5329 to 5406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 23/26(88%) 0/26(0%) Plus/Minus
Query      248  ALFHP*LACEPPL*TYLRLHLLKNAT  325
                ALF P*LACEPPL*TYLRL+LL NAT
Subject   5329  ALFQP*LACEPPL*TYLRLYLL*NAT  5406

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 2

Range 1: 1902 to 2228 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 68/109(62%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                EVAF+S+ S+ Y YNGGSH S GW++AL+EL +EL LD+SYDHCLIQ+Y  G +IGFHADDE CY  G SVVTVNL+G A F V+ N++G++ +  L DGDV+VM PGM
Subject   1902  EVAFYSRHSKEYKYNGGSHRSLGWDEALNELTQELGLDDSYDHCLIQRYTAGGSIGFHADDEPCYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGM  2228

Range 2: 2030 to 2161 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 24/44(55%) 0/44(0%) Plus/Minus
Query       68  FDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  199
                F  T K A P K TVTT  P  *H SSSA NPI+ P +Y  I+Q
Subject   2030  FSFTSKVASPCKLTVTTEPPGR*HGSSSAWNPILPPAVYLWIRQ  2161

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 1

Range 1: 1942 to 2262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 58/107(54%) 0/107(0%) Minus/Plus
Query        1  AFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  321
                AF+SK S  Y Y GGSH SQG  ++L ELR  + L E YDHCL+QKY+K   I FHADDEKCY  G  VVT+N++G A F ++ N   EV    L DGDV VM  G+
Subject   1942  AFYSKYSTGYTYTGGSHISQGMPESLVELRRSMGLGEEYDHCLVQKYEKDGAIPFHADDEKCYLPGSCVVTLNMHGTAEFMLKENGKEEVHRVTLEDGDVLVMPEGV  2262

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 1

Range 1: 4851 to 5165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 50/105(48%) 0/105(0%) Minus/Plus
Query        4  FFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPG  318
                FFSK    Y YNGGSH S GW +AL+++   +K    +DHCL+QKYK G  + FHADDE+CY S   ++TVNL G+A F  +  K G+V+   +  GD F+M  G
Subject   4851  FFSKLGEGYTYNGGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCG  5165

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 6002 to 6205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 28/68(41%) 0/68(0%) Minus/Plus
Query        4  YDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPG  207
                +DHCL+Q+Y  G +IGFHAD+E+CY     ++TVN+ G A F+           +++   DVFVM  G
Subject   6002  FDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQG  6205

Range 2: 5891 to 5953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 13/21(62%) 0/21(0%) Minus/Plus
Query      256  FFSKCSRRYVYNGGSHASQGW  318
                FFS+    Y YNGGSH S+GW
Subject   5891  FFSRNGAPYSYNGGSHPSRGW  5953

Nucleotide Sequence (525 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
525

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
393.3 2046.2 26% 8.651e-109 88% NC_016509
161.9 161.9 32% 3.927e-39 39% NC_004667
173.4 173.4 30% 1.398e-42 43% NC_029783
139.4 139.4 26% 2.253e-32 40% NC_022072
111.0 111.0 25% 8.031e-24 36% NC_016417

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 8

Range 1: 2423 to 2932 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
393.3 bits(852) 0.0 165/170(97%) 0/170(0%) Minus/Plus
Query       16  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG  525
                VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG
Subject   2423  VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG  2932

Range 2: 2423 to 2932 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
367.2 bits(795) 0.0 153/170(90%) 0/170(0%) Plus/Minus
Query       16  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH  525
                TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDV PE+TYNLLHGMSVSIAY S SIHYHIA SHHFHTQFWYS*AAVSGCQLYW+HQAQLEYFY+ LL*CL QF+NI*V+DVNH+TN RFMITKA V LAVR+VLR LFLKH
Subject   2423  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKH  2932

Range 3: 2424 to 2930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
348.8 bits(755) 0.0 150/169(89%) 0/169(0%) Plus/Minus
Query       18  HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A  524
                HQQSPVS*P+YVP* +STLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERR SR+NL*SSARNE KHRL L QYTLSHR FAPLPHPVLV*LGCRLWLSALL TSSTTRIFL  SSLVL PI+KHLS RRQP*NQ  LYDHKSACP GST*CSS+PLS*A
Subject   2424  HQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*CSSQPLS*A  2930

Range 4: 2424 to 2933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 152/170(89%) 0/170(0%) Minus/Plus
Query       15  CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV  524
                CLRKR RRT RTA WT AFVIIKR+LV WLTS T*MF NW KH*RR+ *KYSSCA*C Q*S*QPETAA*LYQNWVWKWCE+AM**CIL E *AMLTLIPCRRL*V SG TSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRR LRDIVWL*YRRLLMV
Subject   2424  CLRKRLRRTSRTAKWTRAFVIIKRQLVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMV  2933

Range 5: 2425 to 2931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.9 bits(718) 0.0 149/169(88%) 0/169(0%) Minus/Plus
Query       17  A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W  523
                A*ERG EEH+VLP GHALL*S*S  WF+G*RL LRCF IG STREE +KNIRVVLDV NRADSQRRQPNYTRTGCGSGAK RCDNVYCRR RRCL SFRAEDYKF RE RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVD  *GT* GYDTGDC*W
Subject   2425  A*ERGCEEHHVLPNGHALL*S*SASWFHG*RLRLRCF*IGASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*W  2931

Range 6: 2722 to 2931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 67/70(96%) 0/70(0%) Plus/Minus
Query       17  PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  226
                PSAISGIIT+LCPL  VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC
Subject   2722  PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  2931

Range 7: 2557 to 2685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 42/43(98%) 0/43(0%) Plus/Minus
Query      263  VYIIXXXXXXXXXXXXGIVRLPSLAVSSIGNIKHNSNIFMSFF  391
                VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIF+SFF
Subject   2557  VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFISFF  2685

Range 8: 2425 to 2490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/22(91%) 0/22(0%) Plus/Minus
Query      458  L*SQKRMSNWQYVMFFAASFLS  523
                L*SQKR+S WQYVMFFAASFLS
Subject   2425  L*SQKRVSIWQYVMFFAASFLS  2490

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 1

Range 1: 1845 to 2348 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.9 bits(347) 0.0 66/168(39%) 0/168(0%) Minus/Plus
Query       22  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIA  525
                +L + A+K+++YC  + + CD +A  GFMVDVYD+   ++A+A++KK   +F++ LMFP+EL   +G + + EL   V R+GD + Y VG  G+ Y HS   +  FF  + V+  SG+ F +EY GYR GYH  ++C    +  +    R +  SF G SLV IP +A
Subject   1845  LLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVA  2348

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 2976 to 3455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.4 bits(372) 0.0 69/160(43%) 0/160(0%) Minus/Plus
Query       31  AAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIP  510
                A+K  T+C  D R C  K   GFMVDVYDL  +E+A++L  K ++ F++  M P+EL ARDGS TI EL   V RKGD++ Y+VGG GD+Y HS QK+ S      V      A++ EY+GYR GYH   + +     A  ++TR++ T+  G ++V  P
Subject   2976  ASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAP  3455

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 2564 to 2971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 54/136(40%) 0/136(0%) Minus/Plus
Query      118  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSL  525
                ++ + A+++I+YC    + C  +   G+MVDVYDL   ELA+AL+ K + IF+LC M P+EL A  G + + EL   V R GD ++Y+VG  G++Y H   ++ S+  S   +  SG+ + VEY GYR+GYH  ++
Subject   2564  IISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTV  2971

Grapevine leafroll-associated virus 6, complete genome

Sequence ID: Length: 13807 Number of Matches: 1

Range 1: 2277 to 2666 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 47/130(36%) 0/130(0%) Minus/Plus
Query      112  NITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCV  501
                NIT+C   +  C  ++    MVDVYDL VF L +A+EK+   I   C MFP EL +RDG +  P   V V R G V+ Y++    D+Y H +  ++SF  ++ ++  SG  +SVE +     Y  F + +
Subject   2277  NITFCHNTVPNCSVRSTAVIMVDVYDLSVFSLVKAMEKEGALIARCCFMFPPELISRDGIVVHPATNVVVTRNGRVLKYSIANTSDSYTHDLNNVLSFVTTSSLRSESGLVYSVELLNQNGPYMDFQVAL  2666

Nucleotide Sequence (435 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
435

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
219.6 1197.4 22% 1.248e-56 80% NC_016509

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 7

Range 1: 4223 to 4534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.6 bits(473) 0.0 95/104(91%) 0/104(0%) Minus/Plus
Query       10  LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL  321
                +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKG SRAA L
Subject   4223  VARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASL  4534

Range 2: 4225 to 4530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 92/102(90%) 0/102(0%) Plus/Minus
Query       14  MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA  319
                +AALL PFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAAAVRH V*TFNESP MYPISST PDTRSLNSA A
Subject   4225  LAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALA  4530

Range 3: 4226 to 4528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 84/101(83%) 0/101(0%) Plus/Minus
Query       16  GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR  318
                G PT TFLC QRQTR YAHQF+SPAI ASFDTPQCRYP+SDAPYIPEPLRR+*YKNR FLIAR**ICG RKA GLN+QR+AV VPHL H SRH IFKFSPR
Subject   4226  GCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPR  4528

Range 4: 4218 to 4529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 88/104(85%) 0/104(0%) Plus/Minus
Query       15  WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP  326
                W PYLHLSL+STP+T LRPSISKPCHTRLL*YTSMPLS IRRSLYT*TA*A+VI ES ISHSSMIDMR P*GTRSE ST+RR CTPS PRIQT DL*IQP+L P
Subject   4218  WLPYLHLSLQSTPNTRLRPSISKPCHTRLL*YTSMPLSRIRRSLYT*TA*ARVI*ESPISHSSMIDMRRP*GTRSERSTSRRKCTPSLPRIQTRDL*IQPSLPP  4529

Range 5: 4224 to 4529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 85/102(83%) 0/102(0%) Minus/Plus
Query       15  *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP  320
                *RGLNLKI CLD+W+RWGT+TA R* FRP ALR PHIYHRAMRN+RFLYY RLSGSGI*GASD G*RH*GVSKEA MAGL N*WA* RVWR* QRKV VG P
Subject   4224  *RGLNLKIACLDTWKRWGTFTATR*TFRPCALRPPHIYHRAMRNRRFLYYSRLSGSGI*GASDTG*RH*GVSKEASMAGLRN*WA*PRVWR*LQRKVQVGQP  4529

Range 6: 4372 to 4524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 46/51(90%) 0/51(0%) Minus/Plus
Query       20  TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*G  172
                T A*AVQVYRERRI DSGIEVYQRRRVWQGFEIDGRS V GVD KERCK*G
Subject   4372  TRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*G  4524

Range 7: 4219 to 4323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 28/35(80%) 0/35(0%) Minus/Plus
Query      221  GSSVG*I*RSCVWIRGGDGVHIRRFVECSDRVPYG  325
                G S G*I*RS VWIRG DGVH+RR VE SDRVPYG
Subject   4219  GGSEG*I*RSRVWIRGRDGVHLRRLVERSDRVPYG  4323