Queries
Nucleotide Sequence (410 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
169.2 | 349.1 | 24% | 1.703e-41 | 41% | NC_012484 | |
165.6 | 311.1 | 28% | 2.161e-40 | 38% | NC_015522 | |
165.1 | 318.4 | 35% | 2.969e-40 | 34% | NC_002786 | |
150.4 | 390.7 | 27% | 7.701e-36 | 40% | NC_031692 | |
148.6 | 295.1 | 26% | 2.743e-35 | 34% | NC_006950 |
Alignments
Range 1: 5287 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 69/133(52%) | 0/133(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 408 C V G +R P ALFAK+ + V+D +I +K+ SYATEF+IGHSLGDA W+LLP+E V YQSAVFDF CR+A ++K++FKLG VE S+ + +W SY+ Y LNS QR+ L ++ + HFPGD+ E Subject 5287 CGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATEFAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPE 5685
Range 2: 5311 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 51/125(41%) | 0/125(0%) | Minus/Minus |
Query 34 FFGVTGKVLANSLSTESSALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA 408 F G+ +V S E AL IE V GVR PG R D A+ E + S+A +EVED RLI + D E+ PE V E V + ELSGI L+ +G V+N+ +LGE+C G A+ A Subject 5311 FGGIAREVELGRASEEHLALS*IEEAVEGVRSPGGKFLDCFNNRALDRAELEEQFEFPRSIAAKEVEDGRLIDNLLDREEGPERVAETVPNGELSGIRSHLVSDGGVLNSDEDLGEQCPGHANCA 5685
Range 3: 5298 to 5555 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 48/86(56%) | 0/86(0%) | Minus/Minus |
Query 21 EISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 278 E ST PSL +L S A RQ+KSKTAD** T+S G R Q ASPR P+ NSVA*E S+M SST LA SA+G R P T Subject 5298 ERSTGPSLKSSLSSRGALRQRKSKTAD**TTSSTGRRDQSASPRLCPMANSVA*EAILSAMEASSTAMKILANSALGMRTAPAAPT 5555
Range 1: 5104 to 5457 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 67/118(57%) | 0/118(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL 363 C V G +RSP ALFAKLM+ VDD +ID+KL++Y TEF++GHSLGDAFW +LP+E VPYQSA FDFFCR A KVM +LG SL S L W S+S Y+++NS RR L Subject 5104 CGYYVGFTGAVRSPPALFAKLMIAVDDESIDDKLIAYLTEFTVGHSLGDAFWTILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSSHRRQL 5457
Range 2: 5115 to 5381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 48/89(54%) | 0/89(0%) | Minus/Minus |
Query 21 EKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 287 ++R+ PSL+MTL + A RQKKSK A *GT S G QKASPRE P NSV * S SS+ SST MSLAK A G+R P T Subject 5115 DRRDSGASPSLSMTLACAGARRQKKSKHALW*GTVSTGRMVQKASPREWPTVNSVR*AMSLSSIDSSSTAIMSLAKRAGGDRTAPVKPT 5381
Range 3: 5152 to 5346 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 25/65(38%) | 0/65(0%) | Minus/Minus |
Query 58 HDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEK 252 HD + + EEVE L+ D DGE PEGV + + EL +G++L+++ VV+ HELG++ Subject 5152 HDFGLRWGASAEEVETRALVRDGLDGEDGPEGVAKRMAHRELGEVGDELVVDRLVVHGDHELGKE 5346
Maize rayado fino virus isolate Costa Rican, complete genome
Range 1: 4999 to 5352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 67/118(57%) | 0/118(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL 363 C V G +RSP ALFAKLM+ VDDG+I +KL++Y TEF++GHS GDAFW +LP+EAVPYQSA FDFFCR A KVM +LG SL S L W S+S Y+++NS RR L Subject 4999 CGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQL 5352
Range 2: 5010 to 5276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 48/89(54%) | 0/89(0%) | Minus/Minus |
Query 21 EKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 287 E R+ PS N+TL + A RQKKSK A *GTAS G QKASP E P NSV * S S M PSST MS AK A G+R P T Subject 5010 ESRDSGASPSRNITLACAGARRQKKSKQALW*GTASTGRMVQKASPEEWPTVNSVR*AMSLSEMDPSSTAIMSFAKRAGGDRTAPVKPT 5276
Range 3: 5038 to 5346 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 35/103(34%) | 0/103(0%) | Minus/Minus |
Query 49 SALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNG 357 +++ + + V P Q +K GE+ A+ +H + S EEVE L+ +S D E PEG+ G+ + EL IG++L+ +GSV++ +HEL EK G Subject 5038 ASMTGVHEGIHRVGGPLQTLKCQGEQGLGCLAKPQHHFGLCRSSTAEEVEAGALVRNSLDWEDGPEGIAGGMANSELREIGDELVRDGSVIDRYHELREKGRG 5346
Grapevine asteroid mosaic-associated virus isolate GV30, complete genome
Range 1: 5488 to 5817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 57/110(52%) | 0/110(0%) | Plus/Plus |
Query 34 GCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL 363 GC+RSPIALFAK+ + VDDG+I +KL SY EF++GHSLGD+ W LP+ AVP+QSA FDFFCRHA ++K+ KLG V + + + L W +++ Y+ L+S R A+ Subject 5488 GCVRSPIALFAKIAIAVDDGSISDKLASYLAEFALGHSLGDSLWQALPLSAVPFQSACFDFFCRHAPPELKLSLKLGEVPEDIIARVGANLRWATHAIYTTLSSAARWAI 5817
Range 2: 5487 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 46/79(58%) | 0/79(0%) | Minus/Minus |
Query 33 TLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQP 269 T PSL +L S AWRQKKSK A * GTA G Q+ SPRE P NS *E S S M PSST LA AMGER QP Subject 5487 TSPSLRESLSSGGAWRQKKSKQAL*KGTAESGRACQRESPREWPRANSAR*EASLSEMEPSSTAMAILANRAMGERTQP 5723
Range 3: 5488 to 5793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 41/102(40%) | 0/102(0%) | Minus/Minus |
Query 34 EHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA 339 E V GV P Q+ ++ D A+ E +L++ MA EEV+ L GD + E +PEGVTEGV ELS IG +L+ +G++V+ + +LGE+ +GG + A Subject 5488 EGGVDGVSGPAQVGADASDDVFRDFAELERELELGWGMAAEEVKAGALKGDG*EREGLPEGVTEGVAQGELSEIGGELVRDGAIVDGYGDLGEQGDGGTNAA 5793
Range 4: 5472 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 35/84(42%) | 0/84(0%) | Plus/Plus |
Query 18 VCLVARLYPLPHCTFRQAHGVR*RRNH**EASLLCH*VLNRSLPR*RLLEPAPHRSCPLSVGCLRLLLSPCFRRHQGHVQTGQS 269 +C L PH RQ R R H *+A LL *V LPR* L P S PLS L LLL PC R Q Q +S Subject 5472 LCQQRWLRSFPHRPVRQDRHSRRRWLHL*QARLLSR*VRPGPLPR*LPLASPPALSRPLSERLL*LLLPPCPTRAQALSQARRS 5723
Citrus sudden death-associated virus, complete genome
Range 1: 5569 to 5898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 57/110(52%) | 0/110(0%) | Plus/Plus |
Query 34 GCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL 363 GC+RSP+ALFAKL + VDDG+I +K+ SY +EF++GHSLGD W LP+EAVP+QSA FDFFCR A +K+ LG V S+ + + L W S++ Y+ L+S R A+ Subject 5569 GCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAI 5898
Range 2: 5568 to 5804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 43/79(54%) | 0/79(0%) | Minus/Minus |
Query 33 TLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQP 269 T PS+ +L A RQKKSK AD GTAS G Q+ SPRE P NS E S M PSST SLAK A GER QP Subject 5568 TSPSMRESLRCLGARRQKKSKQADWKGTASRGKASQRWSPREWPRANSERYEAILSEMEPSSTAMASLAKRATGERTQP 5804
Range 3: 5569 to 5880 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 35/104(34%) | 0/104(0%) | Minus/Minus |
Query 34 RIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA 345 R E V G+R P Q G + +D A+ E + +V A EEV+ RL G+ +G+ PE V++GV + + + +G+V++++ +LG++ +GGADTA Subject 5569 RGECGVDGMRGPLQG*PDAGNDGFWDLAEHEREFEVSGGPAAEEVKAGRLEGNGLEGQSFPEMVSKGVAKSKFREV*GHFVRDGAVIDSYGQLGKESHGGADTA 5880
Nucleotide Sequence (373 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
188.5 | 328.1 | 24% | 2.368e-47 | 33% | NC_012484 | |
184.8 | 361.2 | 23% | 3.005e-46 | 37% | NC_031692 | |
183.4 | 325.0 | 29% | 7.791e-46 | 29% | NC_001793 | |
177.0 | 316.6 | 21% | 6.648e-44 | 38% | NC_029063 | |
172.4 | 389.6 | 32% | 1.592e-42 | 35% | NC_033828 |
Alignments
Range 1: 733 to 1104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 70/124(56%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 ARD TRY +V+ +PP + WF HD++ Y S VA F CPHLE+L+ASLVVPPES FT+LS P +YRY F G +L Y+LE NP HSY QP+ AL+WL+T +I+ +++L +T+LESWGPVH Subject 733 ARDTTRYEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFPEIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVH 1104
Range 2: 735 to 1100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 52/122(43%) | 0/122(0%) | Plus/Minus |
Query 6 TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMSR 371 TGPQ S V R M++V SH RA G G S *+ P R* G ++R VK DSGGTT EA SR GQ K AT +++Y SC+NQ GG T *RV+SR Subject 735 TGPQDSSLVTVR*RLPQRMVVVLSHSRASRGWLYEWPGLPSN**LRREPAKLYR*ISGKRERLVKSDSGGTTREAKSFSR*GQSAKKAATWESEKYCSASCINQTAWVGGATATCS*RVVSR 1100
Range 3: 832 to 1104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 30/91(33%) | 0/91(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSH 274 V+G P + DG V A + G +P + L V V + + I E A +++ V +G++ E LRRDD+ S + LK+ E SSH Subject 832 VHGAPRLELGDGEVEVAAANGGGFEPFEGFTRLAVRVAGVALQLIVEARASEAVPVNFREKGEVGEV*LRRDDEGSEKLLKVRAVREESSH 1104
Grapevine asteroid mosaic-associated virus isolate GV30, complete genome
Range 1: 748 to 1119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 70/124(56%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 A+D TRYP S+S P T F HD++MY + + F +CPHL++LYASLVVPPES FTD+S P LYRYRF G L+Y LE NP+H+Y QP+SAL+WL+T +I+G I L ++RL+SWG VH Subject 748 AKDTTRYPTTSSSLPTEETAFMHDALMYYAPSQILDLFVSCPHLQKLYASLVVPPESDFTDVSLYPDLYRYRFQGSDLVYELERNPAHNYTQPRSALQWLKTTTIRGEGITLTVSRLDSWGSVH 1119
Range 2: 867 to 1115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 43/83(52%) | 0/83(0%) | Plus/Minus |
Query 6 TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQ 254 T PQ SKR R + P M++V SH+RA+ G *LC G S * P R*R*R G ++ SVK DSGGTT EA RWGQ Subject 867 TEPQESKRETVRVIPSPRMVVVLSHWRAERGWV*LCAGLRSSS*TRSEPWKR*R*RSG*RETSVKSDSGGTTREA*SFWRWGQ 1115
Range 3: 753 to 830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 14/26(54%) | 0/26(0%) | Plus/Minus |
Query 291 YMMESCVNQVLHSGGEVETSG*RVMS 368 YM SC+N V G E E G*RV+S Subject 753 YMRASCMNAVSSVGREEEVVG*RVVS 830
Range 4: 859 to 1119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 32/87(37%) | 0/87(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLE 262 V+G P QA D + D GL+PL+ GL V V + F+ +DE+ A++++AV+ G + + E L DDQR V+ L++G E Subject 859 VDGAPRIQAGDSQGDPFSTDGSGLEPLEGGAGLGVVVCGVAFQLVDEVRALEAVAVEVGVKRDVGEVRLWGDDQRGVELLEVGAGDE 1119
Range 1: 535 to 906 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 70/124(56%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 A+D RYP STS P+ T F HD++MY + + F +CP LE+LYASLVVPPESSFT +S P LYR+RF GD+LIY LE NP+H+Y QP+SAL WL+T +I+G + L ++RL+SWGP H Subject 535 AKDTPRYPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHPDLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCH 906
Range 2: 654 to 899 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 39/82(48%) | 0/82(0%) | Plus/Minus |
Query 9 GPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQ 254 GP S R P M++V S RAD G *L G S *+ SP R R*R G ++ VKEDSGGTT EAY S +GQ Subject 654 GPHESSLDTVRETPGPRMVVVRSQSRADRGWV*LWAGLPSNS*IKRSPSKRKR*RSGWREIEVKEDSGGTTREAYSFSSFGQ 899
Range 3: 540 to 617 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 13/26(50%) | 0/26(0%) | Plus/Minus |
Query 291 YMMESCVNQVLHSGGEVETSG*RVMS 368 YM SC+ V SG EVE G R +S Subject 540 YMRASCMKAVSVSGREVEVLGYRGVS 617
Range 4: 595 to 900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 30/102(29%) | 0/102(0%) | Plus/Minus |
Query 8 GTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMRE 313 GTP + G + + D +P++ L V V + + I++ V +K+ AVK E E GL DD+ VQ L++ E ++ +H+GVM E Subject 595 GTPRVEPGHGERNAWSADGGCAEPVEGGSRLGVVVGGVALQLINQTVPVKAKAVKIWMERDRGEGGLGGDDKGGVQFLELRAGKEQVNNLSGGVIHEGVMHE 900
Nectarine virus M isolate NeVM/12C51, complete genome
Range 1: 525 to 896 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 69/124(56%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 A+D TRYP S P T F HD++MY + + F P L+++YASLVVPPES FTD+S P LYR+RF GDQL+Y LE+NPSH+Y QPK AL WL T +I+ D+ L ++RLESWGPVH Subject 525 AKDTTRYPTTSHDLPNFETLFMHDALMYYTPGQIVDLFLERPKLQKVYASLVVPPESQFTDISLFPELYRFRFEGDQLVYELEQNPSHNYIQPKRALDWLTTTTIRSADLTLTVSRLESWGPVH 896
Range 2: 585 to 896 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 40/104(38%) | 0/104(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMRE 313 V+G P +A D V D G +P+Q LGL V V +L + ++ LV ++S AV+ G EG +SE R DD+ V L+ GT E R VH+GV+ E Subject 585 VDGAPRLEAGDSESEVGRSDGGGGEPIQGSLGLDVVVGRVLLELVN*LVPLESEAVEFGEEGNVSELAFRWDDE*CVDLLEFGTLKEEVYDLAWRVVHEGVVHE 896
Range 3: 668 to 892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 36/75(48%) | 0/75(0%) | Plus/Minus |
Query 6 TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEA 230 TGPQ S+R R S M++V S +A LG *L +GF S * +WSP N R* G ++ SV SGGTTS+A Subject 668 TGPQDSRRETVRVRSADRMVVVVSQSKARLGWM*LWEGFCSSS*TNWSPSNLKR*SSGKREMSVNWLSGGTTSDA 892
Range 1: 650 to 1021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.4 bits(370) | 0.0 | 68/124(55%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 A+D TRYPE S P T F HD++MY + V F +L+RLYAS+V+PPESSFTDLS +PSLY+ +F D L+Y+LE NP+H+Y+QP+SAL+WL T +I+G D L I+ L+SWGPVH Subject 650 AKDATRYPETSPDLPNTPTAFMHDALMYYTPAQVLDLFTKSQNLQRLYASVVIPPESSFTDLSLSPSLYQIQFEDDTLVYQLEGNPAHAYRQPRSALQWLSTTTIRGPDFDLTISILDSWGPVH 1021
Range 2: 655 to 1017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 54/121(45%) | 0/121(0%) | Plus/Minus |
Query 6 TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMS 368 TGP S+ M R+ S P M++V SH RADLG * GF S * S N *R+G ++RSVKEDSGG T+EAY R+ + K +T + Y+ SC+ V G E SG RV S Subject 655 TGPHESRMEMVRSKSGPRMVVVDSHCRADLGWR*AWAGFPSS**TRVSSSNWIW*RDGERERSVKEDSGGMTTEAYSLCRF*LLVKRSSTCAGV*YISASCMKAVGVFGRSGEVSGYRVAS 1017
Range 3: 650 to 1021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 49/124(40%) | 0/124(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMREPSAAFRR*GRDFWVASDVAG 373 V+ P + DG V A D G QPLQ GL V V W+ F+ IDE V ++ V+R GE +I E G DD RSVQ L++ T E H R VH VM E F V S + G Subject 650 VDWAPRVENGDGEVEVGAADGGGGQPLQGGSGLAVGVGWVSFQLIDEGVVLELDLVERRGEREIGEGGFGWDDDRSVQPLQVLTLGEEVEHLRWRVVHQRVMHEGGGGVWEVRGGFGVPSGILG 1021
Range 4: 771 to 965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 23/65(35%) | 0/65(0%) | Plus/Minus |
Query 58 GCCWFAATSEQTWAAGNCAMDSLQGDR*AGRHEIDSGKERGRRTDQ*KRTQEGRPAKRTSAQDGD 252 G W+ AT+ + WA G + L DR R G+E GR D+*+R + G KRT++ D Subject 771 GWWWWTATAGRIWAGGRRGLGFLPADRRGCRPRTGFGRETGRERDR*RRIRVG*RPKRTASAGSD 965
Nucleotide Sequence (432 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
249.9 | 475.6 | 31% | 9.727e-66 | 38% | NC_012484 | |
235.2 | 562.1 | 28% | 2.523e-61 | 41% | NC_031692 | |
232.9 | 442.2 | 31% | 1.235e-60 | 38% | NC_001793 | |
242.1 | 639.2 | 19% | 2.152e-63 | 38% | NC_029063 | |
233.4 | 640.9 | 30% | 8.987e-61 | 36% | NC_033828 |
Alignments
Range 1: 3118 to 3519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.9 bits(539) | 0.0 | 98/134(73%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GKSYPI QLLK++ +++KIAVPTVELRNEWK LK P D WR+ TWESSLLKSARI+VIDE+YK+PRGYLDLAIHAD T L I LGDPLQG YHST+ +SSN RLSSE+KHLQP+MD YCLWSHR+P++ Subject 3118 GCGKSYPIAQLLKSRAFKHFKIAVPTVELRNEWKGVLKVKPQDNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTHSDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQD 3519
Range 2: 3129 to 3512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 76/128(59%) | 0/128(0%) | Minus/Minus |
Query 40 GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 423 G RWD RQ SM G RCL SL RR L E VEW +P GSP+ M V SA*MARSR*P G L* SSMT MRADL R DS V Q S G LR FHSLR+STVGTAIL RS +G*D Subject 3129 GTRWDQRQ**SM*GCRCLTSLLRRWLDESE*VEW*TPWSGSPKAMTKSIVGSA*MARSR*PLGIL*ISSMTKMRADLRRLDSHVLMRQLS*GLTLRTPFHSLRNSTVGTAILKCLNARDLRSWAIG*D 3512
Range 3: 3118 to 3519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 51/134(38%) | 0/134(0%) | Minus/Minus |
Query 29 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA 430 + R+ VGP AV VH L++LDLA E + + +S +V L+RV + D+ + VR+NG VQ+A LV+LV D A FE+ P + +P + R E PF+A+ NS + L++L D VRL A Subject 3118 ILRHTVGPEAVVVHVRLQVLDLAAEAMVG*VRMS*MVDALERVPQSDD*VDRGVRVNGQVQIAPWHLVNLVYDQDAGGFEKA*FPRADAPVVLRFDFEDTFPFVAQFNSGHRNFEVLECARLEELGDWVRLATA 3519
Grapevine asteroid mosaic-associated virus isolate GV30, complete genome
Range 1: 3298 to 3699 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 93/134(69%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GKSYPI +LL T RN+K+AVPTVELR EWKD LK WR+GTWESSLLK AR++VIDE+YK+PRGYLDLAIHAD T ++ I LGDPLQGEYHST+ +S+NARL E +HL P++D YCLWSHRIPRN Subject 3298 GCGKSYPIARLLATPAFRNFKVAVPTVELRAEWKDLLKLPGNAAWRIGTWESSLLKMARVLVIDEIYKMPRGYLDLAIHADPTIEMVIALGDPLQGEYHSTHASSTNARLLPEPRHLAPYLDYYCLWSHRIPRN 3699
Range 2: 3309 to 3701 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 81/131(62%) | 0/131(0%) | Minus/Minus |
Query 40 TLRGMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 432 TLRGMRW RQ S G R S RRAL++ VEWYSP RGSPR M V SA*MARSR*PRG L* SSMT RA L REDSQVP Q + LR SFHS RSSTVGTA L LR+ V R +G*D Subject 3309 TLRGMRWLQRQ**SR*GARWRGSGRRRALVDDAWVEWYSPWRGSPRAMTISMVGSA*MARSR*PRGIL*ISSMTRTRAILRREDSQVPMRQAALPGSLRRSFHSARSSTVGTATLKLRKAGVARRRAIG*D 3701
Range 3: 3298 to 3699 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 55/134(41%) | 0/134(0%) | Minus/Minus |
Query 29 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA 430 VA NAV P V V E+ L E GI G + VVL L+ V E D+ L G V +NG V++ + VDL++D+ A E+ GLPGS +P LE + PF AEL+ W+G L + G G ++ D V L A Subject 3298 VAGNAVAPETVVVEVGGEVARLGKEAGIGG*RVGRVVLALEGVPEGDDHLDGGVGVNGEVEITAGHFVDLIDDEDAGHLEEGGLPGSDAPGGVTGELEEIFPFSAELDGWNGDLEVTEGWGGEETGDRVGLATA 3699
Range 4: 3291 to 3533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 33/81(41%) | 0/81(0%) | Plus/Plus |
Query 22 LARRREVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHS 264 L R +VLP+ + +L LQ R N AP+*ME PQ L NLGVL Q RH LQ + RL P HS Subject 3291 LPRLWQVLPYRPSPRHPSLP*LQGRRSNRRAPR*MERSPQAPR*RRLAHRNLGVLPPQDGPRPRHR*DLQNAPRLSRPRHS 3533
Range 1: 2908 to 3309 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 88/134(66%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GK++PI +LL T R++K+AVPT ELR+EWK+ +K SP+ WR GTWESSLLKSARI+VIDE+YKLPRGYLDLAIH+DS+ + I LGDPLQGEYHST+P+SSN+RL E+ HL P++D YCLWS+R+P++ Subject 2908 GCGKTHPITKLLHTAAFRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTWESSLLKSARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHLAPYLDYYCLWSYRVPQD 3309
Range 2: 2925 to 3302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 67/126(53%) | 0/126(0%) | Minus/Minus |
Query 46 GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG 423 G R RQ S G R L S RR L E G VE YSP RGSPR + + S MARSR PRG+L* SS+T + A L REDSQVP Q GE SFHS RSS VGTA L R+ V+RS +G Subject 2925 GTR*LQRQ**SR*GARWLTSGMRRELEELG*VE*YSPCRGSPRAITNSMDESEWMARSRYPRGNL*ISSITRILALLRREDSQVPKRQA*EGESFMSSFHSDRSSVVGTASLKSRKAAVWRSLVIG 3302
Range 3: 2908 to 3309 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 51/134(38%) | 0/134(0%) | Minus/Minus |
Query 29 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA 430 V +AV P AV V EM D E + G +SGV+L L+R+++ D KL G V ++G*V+V S +LVDL++ + E+ GLPG+++P + L + P EL DG +A G G+++L D + AA Subject 2908 VLGDAVTPEAVVVEVGSEMADFGNEARVGGAGMSGVILALQRISQGDNKLDGRVGVDG*VEVPSGQLVDLIDHEDPGALEKGGLPGAEAPGLRG*ELHELFPLRPELGGRDGEFEVAEGGGVEELGDRMCFSAA 3309
Nectarine virus M isolate NeVM/12C51, complete genome
Range 1: 2916 to 3314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
242.1 bits(522) | 0.0 | 94/133(71%) | 0/133(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPR 427 G GKSYPI +LLKT +++K+AVPT ELR EWKD LK SPA WRLGTWESSLLK+AR++VIDE+YKLPRGYLDLAIHAD T + I LGDPLQGEYHST+PNSSN+RL E +HL P++D YCLWS R+P+ Subject 2916 GCGKSYPISRLLKTAAFKDHKVAVPTTELRAEWKDMLKPSPAHVWRLGTWESSLLKAARVLVIDEIYKLPRGYLDLAIHADPTIEFVIALGDPLQGEYHSTHPNSSNSRLVGETRHLAPYLDYYCLWSRRVPK 3314
Range 2: 2927 to 3310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 75/128(59%) | 0/128(0%) | Minus/Minus |
Query 40 GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 423 G R RQ S G + +S RR L E G VEWYSP RGSPR M + V SA MARSR*PRGSL* SSMT RA SR+DSQVPS Q AG+ SFHS RSS VGTA L VFR +MG*D Subject 2927 GTRRLQRQ**SRYGAKWRVSPTRRELEELG*VEWYSPCRGSPRAMTNSIVGSAWMARSR*PRGSL*ISSMTRTRAAFSRDDSQVPSRQT*AGDGFSISFHSARSSVVGTATLWSLNAAVFRRREMG*D 3310
Range 3: 2916 to 3311 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 56/132(42%) | 0/132(0%) | Minus/Minus |
Query 29 RNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA 424 RN+ P AV V +M E G+ G+ +SGVVL L+RV E D++ V M+G V+VA+RKLVD +ND+ A F+ R LPGS+SP +SR L+ + PF ++ + V+ GLQ+ DG+ L AA Subject 2916 RNSTTPEAVVVEVRGQMAGFTHEAGVGGVGMSGVVLALQRVTEGDDEFNCGVGMDGEVKVAARKLVDFINDEDAGGFQ*RRLPGSESPDMSRGWLQHIFPFSSKFSGGHRDFVVFERGGLQEAGDGIGLTAA 3311
Range 4: 2921 to 3154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 34/78(44%) | 0/78(0%) | Plus/Plus |
Query 34 REVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSC 267 R VL HL ED+ + + Q + * *ME + C L T NLGV+S + RH* LQASSRLP P H C Subject 2921 R*VLSHLPPPEDRRVQRPQSRGAHH*TSS*MERYAEAIPCSCLATRNLGVVSTESRPRPRH**NLQASSRLP*PRHPC 3154
Range 5: 3199 to 3315 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 17/39(44%) | 0/39(0%) | Plus/Plus |
Query 312 KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAFLA 428 K STTPLI P P S + +I + T TA G FL+ Subject 3199 KASTTPLIPTPPTPASWVKPAIWPRTSTTTASGVVEFLS 3315
Range 6: 2920 to 3153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 30/78(38%) | 0/78(0%) | Minus/Minus |
Query 33 HEWLGPGSLEEACRPRQ*RLCEQI*AERTPRFPVSNDQQAKT*GSPSIHCGAQQLGRLSCNCDRAWSSEADRWGKTSR 266 H W G GS EEACR Q*R ++ E TPRF V+ +Q SI Q C SS RW +T R Subject 2920 HGWRGQGSREEACRFHQ*RGRGRLSVETTPRFRVARHEQGMASAYLSIQLEVQWWAPRLCGL*TRRSSGGGRWDRTYR 3153
Range 1: 3197 to 3595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.4 bits(503) | 0.0 | 92/133(69%) | 0/133(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPR 427 G GKSYPI +LL +KIA+PTVELRNEWK ++K PA WR+ TWESSLLKSAR++VIDEVYKLPRGY+DLAIHAD + + I+LGDPLQGEYHST+P+SSN RLSSE+KHL+P++D YCLWS RIP+ Subject 3197 GCGKSYPIQKLLTHPAFAQHKIALPTVELRNEWKAAMKPRPAQVWRISTWESSLLKSARVLVIDEVYKLPRGYVDLAIHADPSVEFVILLGDPLQGEYHSTHPDSSNHRLSSELKHLRPYLDYYCLWSRRIPK 3595
Range 2: 3208 to 3591 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 73/128(57%) | 0/128(0%) | Minus/Minus |
Query 40 GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 423 GMR RQ S G RCL S +RR L E G VEWYSP RGSPR M + SA*MARS PRGSL*TSS+T RAD S E SQV Q AG +FHS RSSTVG+AIL + RS +G*D Subject 3208 GMRRLQRQ**SRYGRRCLSSEDRRWLDESGWVEWYSPWRGSPRRMTNSTDGSA*MARSTYPRGSL*TSSITRTRADFSSELSQVEMRQTCAGRGFIAAFHSFRSSTVGSAILCCAKAGWVRSFWIG*D 3591
Range 3: 3197 to 3589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 52/131(40%) | 0/131(0%) | Minus/Minus |
Query 29 NAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA 421 NA P AV V W +M +L G+ + +W+ VVL+L+RV +D++L VR+NG V + S + V+LV+ + + QR LPG +P + RL PFI++L+SW+ LV+ G +KL D V L AA Subject 3197 NAAAPKAVVVKIWSQMFELGGQAVVG*VWVGRVVLSLERVP*EDDELY*WVRVNGEVDIPSWEFVNLVDHEDSCGL*QRALPGGDAPDLCGARLHRGFPFISQLHSWERDLVLCEGWVGEKLLDWVGLAAA 3589
Range 4: 3202 to 3438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 32/79(41%) | 0/79(0%) | Plus/Plus |
Query 34 REVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSCG 270 R+VLP+ AS +L QD PNC A +*ME + SL +LG L+A++ + R RGLQ +R+ P HS G Subject 3202 RQVLPNPEASHPPSLRTAQDRAPNCGAAK*MESRDEAAPRTSLAHLHLGELAAKVRTSPRDRRGLQTPTRVCRPRHSRG 3438
Range 5: 3480 to 3590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 15/37(41%) | 0/37(0%) | Plus/Plus |
Query 312 KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAF 422 K STT Q P S+I +H T TA+G AF Subject 3480 KESTTRPTQTHPTTACPPSSNICDHILTTTAFGAAAF 3590
Range 6: 3474 to 3590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 18/39(46%) | 0/39(0%) | Minus/Minus |
Query 306 ECGGTIGSTCP*MVGDA*SRWRDGHCWNLD*WSGTHLEE 422 ECGG+ GS+ MV D *+R G +L SGT L E Subject 3474 ECGGSKGSSSQDMVADV*ARRTGGGWMSLGGSSGTLLGE 3590
Nucleotide Sequence (734 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
208.2 | 612.6 | 39% | 1.602e-71 | 38% | NC_012484 | |
189.4 | 380.8 | 28% | 3.201e-47 | 38% | NC_002786 | |
188.9 | 438.2 | 37% | 4.398e-47 | 46% | NC_015522 | |
163.3 | 425.1 | 46% | 2.313e-41 | 43% | NC_031692 | |
134.9 | 370.2 | 47% | 1.849e-42 | 41% | NC_001793 |
Alignments
Range 1: 5311 to 5769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 85/153(56%) | 0/153(0%) | Minus/Plus |
Query 273 GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAPRVLTGGLHLP 731 G +R P ALFAK+ + V+D +I +K+ SYATEF+IGHSLGDA W+LLP+E V YQSAVFDF CR+AP ++K++FKLG VE S+ + +W SY+ Y LNS QR+ L ++ + HFPGD+ EV++LQGELL +FSM LTGGL LP Subject 5311 GAVRMPRALFAKIFIAVEDASIADKMASYATEFAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLLLP 5769
Range 2: 5905 to 6048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 20/48(42%) | 0/48(0%) | Minus/Plus |
Query 3 SLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITHLEVV 146 ++++PFQWVAL++KS+S FTVD + +L +L P+R + LE + Subject 5905 AITVPFQWVALVVKSESTIFTVDPPRAKSLTQLIGPYRHARLLSLEAI 6048
Range 3: 5782 to 5892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 19/37(51%) | 0/37(0%) | Minus/Plus |
Query 156 APMSNETQLPISGRPSRDDHRSDPQPSLPLAPQVKES 266 APMS+++ + DHR DPQPSLPLAP V+E+ Subject 5782 APMSDDSLAGRARSQRDPDHRVDPQPSLPLAPSVQET 5892
Range 4: 5310 to 5555 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 48/82(59%) | 0/82(0%) | Plus/Minus |
Query 487 ETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 E ST PSL +L+S GA RQ+KS TAD * T S GRR Q ASPR PM NSVA*E S M SST LA SA G R P Subject 5310 ERSTGPSLKSSLSSRGALRQRKSKTAD**TTSSTGRRDQSASPRLCPMANSVA*EAILSAMEASSTAMKILANSALGMRTAP 5555
Range 5: 5587 to 5727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 22/47(47%) | 0/47(0%) | Plus/Minus |
Query 315 H*KCVEQFTL*LGNLFGITREMLTNGFSTEGSALDGVQHGVCGVREP 455 H*+ ++QFTL LGN GI RE+ S E AL ++ V GVR P Subject 5587 H*EALKQFTLKLGNFGGIAREVELGRASEEHLALS*IEEAVEGVRSP 5727
Range 6: 5916 to 6017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 15/34(44%) | 0/34(0%) | Plus/Minus |
Query 34 RNGSVSFFKVVEAARSTVKAAESLFIMRATHWKG 135 R G +S+ + + STVK +S F ATHWKG Subject 5916 R*GPMSWVRDLARGGSTVKMVDSDFTTSATHWKG 6017
Range 7: 5768 to 5869 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 13/34(38%) | 0/34(0%) | Plus/Minus |
Query 179 EEEKAEDQNDGHREKDDQRWAAGSHLTWVRTRED 280 E EKAEDQ+D + R SH T R +++ Subject 5768 EAEKAEDQHDDQDRVESGRGQRASHQTLERRQQE 5869
Range 8: 5311 to 5541 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 33/77(43%) | 0/77(0%) | Plus/Minus |
Query 501 AEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAA 731 AE E + RS+AA+EVE G L+ + LDRE+ PE V + V +GE SG+ L+ DG V++++ +LGE+ N A Subject 5311 AELEEQFEFPRSIAAKEVEDGRLIDNLLDREEGPERVAETVPNGELSGIRSHLVSDGGVLNSDEDLGEQCPGHANCA 5541
Maize rayado fino virus isolate Costa Rican, complete genome
Range 1: 5023 to 5451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 77/143(54%) | 0/143(0%) | Minus/Plus |
Query 303 GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAP 731 G +RSP ALFAKLM+ VDDG+I +KL++Y TEF++GHS GDAFW +LP+E+VPYQSA FDFFCR AP KVM +LG SL S L W S+S Y+++NS RR L + R + EV++LQGELLH F P Subject 5023 GAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP 5451
Range 2: 5022 to 5342 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 55/107(51%) | 0/107(0%) | Plus/Minus |
Query 412 RWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 R +EF Y E+E+ + E R++ PS N+TL +GA RQKKS A W*GT S GR QKASP EWP NSV * S S M PSST MS AK A G+R P Subject 5022 R*LEFMRAYTEWEAHFRPSNARESRDSGASPSRNITLACAGARRQKKSKQALW*GTASTGRMVQKASPEEWPTVNSVR*AMSLSEMDPSSTAIMSFAKRAGGDRTAP 5342
Range 3: 5047 to 5346 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 38/100(38%) | 0/100(0%) | Plus/Minus |
Query 408 SALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEE 707 +++ GV G+ V P + ++ GE+G A+ +H + RS AEEVE G LVR+ LD E PEG+ +A+ E +G++L+ DG+V+ HEL E+ Subject 5047 ASMTGVHEGIHRVGGPLQTLKCQGEQGLGCLAKPQHHFGLCRSSTAEEVEAGALVRNSLDWEDGPEGIAGGMANSELREIGDELVRDGSVIDRYHELREK 5346
Range 1: 5128 to 5556 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.9 bits(406) | 0.0 | 77/143(54%) | 0/143(0%) | Minus/Plus |
Query 303 GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAP 731 G +RSP ALFAKLM+ VDD +I +KL++Y TEF++GHSLGDAFW +LP+E+VPYQSA FDFFCR AP KVM +LG SL S L W S+S Y+++NS RR L + R + EV++LQGELLH F P Subject 5128 GAVRSPPALFAKLMIAVDDESIDDKLIAYLTEFTVGHSLGDAFWTILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP 5556
Range 2: 5127 to 5528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 64/134(48%) | 0/134(0%) | Plus/Minus |
Query 331 SNSPCSSVTSLESPGKC*RTAFPRRALRWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 SNSP S TS S + R R R +EF E+++ W ++R++ PSL+MTL +GA RQKKS A W*GT S GR QKASPREWP NSV * S S + SST MSLAK A G+R P Subject 5127 SNSP*S*ETSGSSGRERGRRELWRSWRR*LEFMRA*TEWDAHFKPWKAMDRRDSGASPSLSMTLACAGARRQKKSKHALW*GTVSTGRMVQKASPREWPTVNSVR*AMSLSSIDSSSTAIMSLAKRAGGDRTAP 5528
Range 3: 5152 to 5346 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 34/65(52%) | 0/65(0%) | Plus/Minus |
Query 513 HDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEE 707 HD + +AEEVE LVRDGLD E PEGV +R+A E VG++L++D VVH +HELG+E Subject 5152 HDFGLRWGASAEEVETRALVRDGLDGEDGPEGVAKRMAHRELGEVGDELVVDRLVVHGDHELGKE 5346
Range 4: 5148 to 5351 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 31/68(46%) | 0/68(0%) | Minus/Plus |
Query 508 RALRQAHGLCGRRYHPREASLLRH*ILHRPLSG*RLLESSPDRVRPLPISRVRLLLPPRSGGRQGHVQ 711 R L QAH GRR R+A L H + P S RLL+ P R RPLP RLLLP R Q H + Subject 5148 RPLCQAHDRRGRRVDRRQAHRLPHRVHGGPFSWRRLLDHPPRRDRPLPERVFRLLLPTRPSASQSHAK 5351
Grapevine asteroid mosaic-associated virus isolate GV30, complete genome
Range 1: 5488 to 5892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.3 bits(350) | 0.0 | 63/135(47%) | 0/135(0%) | Minus/Plus |
Query 327 GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLH 731 GC+RSP+ALFAK+ + VDDG+I +KL SY EF++GHSLGD+ W LP+ +VP+QSA FDFFCRHAP ++K+ KLG V + + + L W +++ Y+ L+S R A+ + +V+ QGELLH Subject 5488 GCVRSPIALFAKIAIAVDDGSISDKLASYLAEFALGHSLGDSLWQALPLSAVPFQSACFDFFCRHAPPELKLSLKLGEVPEDIIARVGANLRWATHAIYTTLSSAARWAILHSRRSTRSQPEDPDVSRYQGELLH 5892
Range 2: 5985 to 6032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 8/16(50%) | 0/16(0%) | Minus/Plus |
Query 233 IFPRPHPCQMRPSCPS 280 + PRP P +P CPS Subject 5985 LLPRPRPIHGQPQCPS 6032
Range 3: 5488 to 5817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 47/110(43%) | 0/110(0%) | Plus/Minus |
Query 402 EGSALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAA 731 +G A G + GV GV P ++ ++ AE E +L++ +AAEEV+ G L DG +RE +PEGVT+ VA GE S +G +L+ DG +V +LGE+ D GTNAA Subject 5488 DGPASGGREGGVDGVSGPAQVGADASDDVFRDFAELERELELGWGMAAEEVKAGALKGDG*EREGLPEGVTEGVAQGELSEIGGELVRDGAIVDGYGDLGEQGDGGTNAA 5817
Range 4: 5487 to 5729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 45/81(56%) | 0/81(0%) | Plus/Minus |
Query 490 TSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 + T PSL +L+S GAWRQKKS A GT GR Q+ SPREWP NS *E S S M PSST LA A GER QP Subject 5487 SGTSPSLRESLSSGGAWRQKKSKQAL*KGTAESGRACQRESPREWPRANSAR*EASLSEMEPSSTAMAILANRAMGERTQP 5729
Range 5: 5489 to 5659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 30/57(53%) | 0/57(0%) | Minus/Plus |
Query 560 AAFVPLSRSSPSSWFVWTTVPSKRSFSPTPLNSPSATLWVTPSGIFSRSSPSLTNQP 730 AAFVP S SP S T PS S P L+SP AT VTPSG SRS PS P Subject 5489 AAFVPPSPCSPRSP*PSTMAPSLTSSPPISLSSPWATPSVTPSGKPSRSQPSPFRAP 5659
Range 1: 5164 to 5430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 49/89(55%) | 0/89(0%) | Minus/Plus |
Query 465 GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLH 731 GC+RSP+ALFAKL + VDD +I +KL +Y EF++GHSLGD+ W+ LP+ +VP+QSA FDFFCR AP D+K+ LG V ++ L H Subject 5164 GCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLALHLGEVPETIIQRLSH 5430
Range 2: 5422 to 5571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 21/50(42%) | 0/50(0%) | Minus/Plus |
Query 321 LHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTF 470 L LSWLS++ YS+L S R A+ + + + V+ LQGELL TF Subject 5422 LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGELLQTF 5571
Range 3: 5737 to 5811 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 15/25(60%) | 0/25(0%) | Minus/Plus |
Query 156 GRPSRDDHRSDPQPSLPLAPQVKES 230 G P D R+D QPSLPLAP++ ES Subject 5737 GPPPASDDRTDRQPSLPLAPRIVES 5811
Range 4: 5830 to 5895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/22(41%) | 0/22(0%) | Minus/Plus |
Query 78 LSIPFQWVALIIKSDSAAFTVD 143 + +PFQW DSA F D Subject 5830 VDVPFQWAVASYAGDSAKFLTD 5895
Range 5: 5163 to 5429 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 41/89(46%) | 0/89(0%) | Plus/Minus |
Query 466 WSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 W R + T P + S GA RQKKS AD GT GR Q+ SPRE P NS+ S S M SST SLAK A G+R QP Subject 5163 WERRWMMVSGTSPR*RASFRSRGARRQKKSKQAD*KGTADRGRADQRESPRE*PTANSMRYAASLSEMDESSTAMASLAKRAMGDRTQP 5429
Range 6: 5164 to 5394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 33/77(43%) | 0/77(0%) | Plus/Minus |
Query 501 AEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAA 731 A+ + +L + S AAEE+E G*L DG E P+ V +RV D E V +L+ DG VV + EL EE D ++AA Subject 5164 AQVKGEL*IAGSAAAEEIETG*LKGDGGQGEGGPKRVAERVTDRELHEVCGELVGDG*VVDGDGELSEEGDGRSDAA 5394
Nucleotide Sequence (584 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
134.9 | 290.8 | 19% | 1.42e-39 | 47% | NC_012484 | |
104.6 | 161.1 | 16% | 7.886e-22 | 42% | NC_015522 | |
104.2 | 149.7 | 7% | 1.083e-21 | 46% | NC_002786 | |
83.1 | 167.8 | 10% | 2.674e-16 | 39% | NC_006950 | |
56.5 | 138.8 | 21% | 1.551e-18 | 42% | NC_001793 |
Alignments
Range 1: 5446 to 5769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 56/108(52%) | 0/108(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLILP 325 LLP++ V YQSAVFDF CR+A ++K++FKLG VE S+ + +W SY+ Y LNS QR+ L ++ + HFPGD+ EV++LQGELL +FSM LTGGL+LP Subject 5446 LLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLLLP 5769
Range 2: 5782 to 5895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 20/38(53%) | 0/38(0%) | Plus/Plus |
Query 332 APMSNEAQLPVSGRPSRDDHRSDPQPTLPLAPKVQESP 445 APMS+++ + DHR DPQP+LPLAP VQE+P Subject 5782 APMSDDSLAGRARSQRDPDHRVDPQPSLPLAPSVQETP 5895
Range 3: 5445 to 5555 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 21/37(57%) | 0/37(0%) | Minus/Minus |
Query 1 ETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 111 E ST P+L +L S A RQ+KSKTAD * T S G R Subject 5445 ERSTGPSLKSSLSSRGALRQRKSKTAD**TTSSTGRR 5555
Range 1: 5263 to 5556 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 45/98(46%) | 0/98(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTP 295 +LP+++VPYQSA FDFFCR A KVM +LG SL S L W S+S Y+++NS RR L + R + EV++LQGELLH F P Subject 5263 ILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP 5556
Range 2: 5268 to 5531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 37/88(42%) | 0/88(0%) | Minus/Minus |
Query 7 *SNSPCSSVTSLESPGKCWRTAFPRRALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIG 270 *SNSP S TS S + R R R E * E D+ W + R++ P+L+MTL + A RQKKSK A W*GT S G Subject 5268 *SNSP*S*ETSGSSGRERGRRELWRSWRR*LEFMRA*TEWDAHFKPWKAMDRRDSGASPSLSMTLACAGARRQKKSKHALW*GTVSTG 5531
Maize rayado fino virus isolate Costa Rican, complete genome
Range 1: 5158 to 5451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 45/98(46%) | 0/98(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTP 295 +LP+++VPYQSA FDFFCR A KVM +LG SL S L W S+S Y+++NS RR L + R + EV++LQGELLH F P Subject 5158 ILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP 5451
Citrus sudden death-associated virus, complete genome
Range 1: 5707 to 5985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Plus |
Query 5 LPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSM 283 LP+++VP+QSA FDFFCR A +K+ LG V S+ + + L W S++ Y+ L+S R A+ + D + T LQGELL F + Subject 5707 LPLEAVPFQSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSMPDDPDTTLLQGELLQHFQV 5985
Range 2: 5993 to 6037 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.1 bits(42) | 0.0 | 9/15(60%) | 0/15(0%) | Plus/Plus |
Query 339 CQMKLSCPSLVVLLV 383 C + LSC SLVV L+ Subject 5993 CNLTLSCLSLVVPLL 6037
Range 1: 5302 to 5430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 21/43(49%) | 0/43(0%) | Plus/Plus |
Query 5 LPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLH 133 LP+ +VP+QSA FDFFCR A D+K+ LG V ++ L H Subject 5302 LPLSAVPFQSACFDFFCRRAPRDLKLALHLGEVPETIIQRLSH 5430