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Queries

Nucleotide Sequence (625 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
63
126
189
252
315
378
441
504
567
625

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
455.2 1654.6 30% 2.612e-127 52% NC_001948
125.2 387.5 22% 3.548e-54 34% NC_009892
115.2 379.2 30% 1.56e-52 34% NC_003462
136.7 340.6 31% 4.422e-53 49% NC_008020
128.9 488.7 13% 2.872e-52 29% NC_010538

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 6302 to 6922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
455.2 bits(987) 0.0 186/207(90%) 0/207(0%) Plus/Plus
Query        3  GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVIV*ALSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNINVPREAHFIK  623
                GIFKKPQLIWERICIARE+GNLENCIDNYAIEVSYAYRLGEL+I +MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE I *ALS+WH +SIMNNLVKALSAFEFVGVF VLKFPVV+HSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGRYIKPYSPGCAV GK+NILDEYLSV D  GFDVLFSDPYQNI++P+EAHFIK
Subject   6302  GIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIK  6922

Range 2: 6301 to 6615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 80/105(76%) 0/105(0%) Minus/Minus
Query        2  NSNADKALTKLFIILTPCQTLKA*TITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP  316
                NSNAD ALTKLFIIL  CQ LKA*+I SN+PEIEHLILCLF T+  TQL* ASTSSSVI  + +SPS  A*+TSIA*LS+QFS+LPISLAM I SQI+*GFLKIP
Subject   6301  NSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIP  6615

Range 3: 6685 to 6918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 64/78(82%) 0/78(0%) Minus/Minus
Query      386  MKCASLGTLMFW*GSENSTSKP*ISETDKYSSSMFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  619
                MKCASLG LMFW GSENSTSKP  S TDKYSSS+  FP TAHPGE*GLMYLPVR GLSGTPAVKA K SSSE+SSLI+
Subject   6685  MKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK  6918

Range 4: 6302 to 6922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
274.2 bits(592) 0.0 121/207(58%) 0/207(0%) Minus/Minus
Query        3  LYEVCLPWNVDVLVRV*EQHIKTMNIRDRQVLIKYVYLPLHCTPWRVGLDVPSC*IWTVWHTCCESHERLVFRNELPY*ATFTATWNTMNNNWKFKHAEHTNKFKCRQSLD*VIHNTHTMPNT*GLNNNLKQTRN*APHFVLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRLFKDP  623
                L E+CL  N DVLV V EQHIKT  I D QVLIKY+  P HCTPWR+ L+VPSC I  VW+TCCES+E L+  N LPY* TFT T +TMN+ WKFKH E+T K KC Q  +*+IHNT  MPNT*GL N+ K   N*A H +L+P+QE++ +IM  +F L HH   * S+SV I  L  II+N I Q+A+ PSNA PLP+ LRL +DP
Subject   6302  LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD*LRLLEDP  6922

Range 5: 6300 to 6917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.3 bits(468) 0.0 117/206(57%) 0/206(0%) Plus/Plus
Query        1  RGSLKSLSLFGRGSALLGK*AIWKIALIIMQSRYLMPTDLENYL*A**LRRKLKRIITACVSWFGISTK*GAQFLVCLRLLFRP*VFGMV*VL*IT*SRLCLHLNLLVCSACLNFQLLFIVFQVAVKVA**GSSFLKTSLSWLSQQVCQTVQI*QEGTSSPTLQGVQCKGR*TYLMSTCLSLIFMVLMCCSQTLTRTSTFQGRHTS  618
                +GS +SL+  G G ALLG+ A W+I L IM+ R  M TD E+    ** R+K + II    SW G S +* AQF   L+LL RP*VFG++*VL*I * + C HL+L V S CLNFQ  FIV  V VKV **GS F +  +S LSQQV QT  I QEGT S  LQGVQC+G+  YLMSTC S IF VLMCCS+T T+TS F  RH S
Subject   6300  KGSSRSLN*SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHIS  6917

Range 6: 6304 to 6642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 59/113(52%) 0/113(0%) Plus/Plus
Query        5  DL*KASAYLGEDLHC*GNRQFGKLH**LCNRGILCLQTWRIIYRRDD*GGS*SAL*LRAFPGSE*AQNEVLNFWFV*GYCLGLKCLAWCEYYE*LSQGFVCI*ICWCVLRA*I  343
                DL +AS  LG D+HC*G+ Q G+L+* LC+RG+LC+ T R  +  DD G S   L*L    G E A +E+LNF  +* Y LGLK LA  EYYE* S   V I*+C C   A*I
Subject   6304  DLQEASINLGADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*I  6642

Range 7: 6676 to 6921 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 51/82(62%) 0/82(0%) Plus/Plus
Query      377  *K*PNKGAHF*RRVFRGFHSRCARQSKSNRKVHQALLSRVCSAREDKHT**VLVCL*YSWF*CAVLRPLPEHQRSKGGTLHK  622
                *K* NKGA+F    F  FHSRC+RQ  S+RKVH AL SRVCSARE  +T**VLV   +  F*CAVL P+P+HQ S  GT H+
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQ  6921

Range 8: 6303 to 6707 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 71/135(53%) 0/135(0%) Minus/Minus
Query        4  QK*APLLGYFYRYLEHYEQQLEI*ARRTHQQIQMQTKP*LSYS*YSHHAKHLRPKQ*PQTNQKLSTSFCAYSEPGNARSYNALQLPPQSSRL*IILQVCRHKIPRLHNYQCNFPNCLFP*QCRSSPK*AEAF*RS  408
                +K APLL YFY Y  HYE  LEI*A   H Q QM T  *L+YS*YS++AK+LRP Q* Q   KLS S  A S P    +YN   L P+SS   + L V  H+ P  HN Q N P C  P*QC S+P+  EA *RS
Subject   6303  RKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRLIEAS*RS  6707

Range 9: 6765 to 6917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 33/51(65%) 0/51(0%) Minus/Minus
Query      466  *SVPPLER*CSGKGLRTAHQNHEYQRQTSTHQVCLSSLALHTLESRA*CTF  618
                *+VP  E *C G G RTAHQN +   +TSTHQV   SLALHTLE++A*CTF
Subject   6765  *NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTF  6917

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 5

Range 1: 6200 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 48/80(60%) 0/80(0%) Plus/Plus
Query        3  GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVI  242
                G+FKKP L+ ER+ IA E  NL+NCIDNYAIEVSYAY +GE     ++EEE++AHYNCVRF+V++ H ++CS+S LF  I
Subject   6200  GVFKKPDLVLERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 2: 6482 to 6832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 50/117(43%) 0/117(0%) Plus/Plus
Query      270  VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNINVPREAHFI  620
                V++M+ +V  L  + F      ++  ++VH+VPGSGK++LIRE ++ +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS     GFD  FSDP+QN      AHF+
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFV  6832

Range 3: 6199 to 6438 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 39/80(49%) 0/80(0%) Minus/Minus
Query        2  ITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP  241
                I   + E EH       T   TQL*CAS SSS+     +SP  *A +TSIA*LSMQF +L +S A+  LS    GFLK P
Subject   6199  IDLKRSETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVSTAI*SLSSTKSGFLKTP  6438

Range 4: 6598 to 6801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 27/68(40%) 0/68(0%) Minus/Minus
Query      386  FW*GSENSTSKP*ISETDKYSSSMFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  589
                F *GSE   S P  +  ++YSSSM   P    P     M  P  FG SG+P  KA+       +SLIR
Subject   6598  F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR  6801

Range 5: 6200 to 6430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 26/77(34%) 0/77(0%) Minus/Minus
Query        3  KQTRN*APHFVLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRLFKDP  233
                K+ RN     V + N E H V++  +F  +    +*    V I  L+CII+NAI ++  F SN  PL +++  F++P
Subject   6200  KEIRNRTF*KVGVLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNAILEVVCFNSNLKPLQHQIWFFENP  6430

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 5

Range 1: 6351 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.2 bits(245) 0.0 46/78(59%) 0/78(0%) Plus/Plus
Query        3  GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  236
                G+FKKP L+ ER+ IARE  NLENCIDNYAIEVS AY++GE     +T +EV+AHYNCVRF+V++ H ++ +I  LF+
Subject   6351  GVFKKPDLVLERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK  6584

Range 2: 6702 to 7052 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 53/117(45%) 0/117(0%) Plus/Plus
Query      270  VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNINVPREAHFI  620
                VSIM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS     GF+ LFSDPYQN      AHFI
Subject   6702  VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI  7052

Range 3: 6350 to 6538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 36/63(57%) 0/63(0%) Minus/Minus
Query        2  TRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP  190
                T KRTQL* ASTS  V   +  SP L A +TSIA*LS+QFSK  +SLA+  LS+   GFL  P
Subject   6350  TMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSKFLVSLAICNLSRTRSGFLNTP  6538

Range 4: 6854 to 7021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 24/56(43%) 0/56(0%) Minus/Minus
Query      422  FW*GSENSTSKP*ISETDKYSSSMFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT  589
                FW*GSE     P     DKYSS M   P    P    L+Y+P     SGTP V A+
Subject   6854  FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTAS  7021

Range 5: 6357 to 6551 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 22/65(34%) 0/65(0%) Minus/Minus
Query        9  VLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRLFK  203
                +++ + ETH ++M  + L S      F+  V  R  + I+IN IFQ+  F SN   L +K+R F+
Subject   6357  MIMLHNETHTIVMSIHLLGS*VQIEIFTHLVCARNFNSIVINTIFQVPCFSSNLQSLQDKIRFFE  6551

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 4

Range 1: 5844 to 6113 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 57/90(63%) 0/90(0%) Plus/Plus
Query        3  GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVIV*ALSVWHGV  272
                GI+KKPQL+ ER+CIA+E  NL NCIDNYAIEVSYAY+LGEL++  M EEE EA YNCVR +V+NKH ++ SIS LF+ I *+ +   GV
Subject   5844  GIYKKPQLVLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGV  6113

Range 2: 6153 to 6359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 40/69(58%) 0/69(0%) Plus/Plus
Query      279  MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPY  485
                M+ LV     F F  V  VL+ PV+ H VPG+GKS+LIRELI+ D  F+AFTAG PD PNL+GR IK Y
Subject   6153  MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY  6359

Range 3: 5843 to 6115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 45/91(49%) 0/91(0%) Minus/Minus
Query        2  LTPCQTLKA*TITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP  274
                +TP +  +   I+ NK EIE    CLF T   TQL  AS SSS I+   NSPSL A*+TS+A*LS+Q  KL +S A+   S  S GFL +P
Subject   5843  ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAIHRRSSTSCGFL*MP  6115

Range 4: 6260 to 6352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 18/31(58%) 0/31(0%) Minus/Minus
Query      386  LMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  478
                L+  P+RFG SG+PAVKA K  S  ++SLIR
Subject   6260  LIARPLRFGGSGSPAVKAMKR*SRLINSLIR  6352

Hop mosaic virus, complete genome

Sequence ID: Length: 8550 Number of Matches: 8

Range 1: 5708 to 5941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 48/78(62%) 0/78(0%) Plus/Plus
Query        3  GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  236
                GI+KKPQL+ ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++  M+EEEV A YNCVR ++RNKH ++  + G++E
Subject   5708  GIYKKPQLVLERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE  5941

Range 2: 6022 to 6231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 37/70(53%) 0/70(0%) Plus/Plus
Query      279  MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYS  488
                M+ +V  L  F F  +   L+ P+VVH VPG+GKS+LIRELI+ D  FVAFTAG+ D P+LTG +I+ +S
Subject   6022  MDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTGNWIRKWS  6231

Range 3: 6232 to 6327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/32(38%) 0/32(0%) Plus/Plus
Query      492  GCAVQGKINILDEYLSVSDIHGFDVLFSDPYQ  587
                G A  G   +LDEY  ++++     LF DP Q
Subject   6232  GEASSGSFLVLDEYTLLTELPPAYALFGDPVQ  6327

Range 4: 5720 to 5908 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 30/63(48%) 0/63(0%) Minus/Minus
Query       15  VLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRL  203
                +L+P    + V+   NFLL+H   R  +K VGIR+L CIII+AI QI    S+A PL ++LRL
Subject   5720  MLVPYDYPYTVVKGANFLLTHAIDRLLTKRVGIRHLYCIIIDAIVQIIQLHSDAHPLQHQLRL  5908

Range 5: 6022 to 6210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 18/63(29%) 0/63(0%) Minus/Minus
Query      279  SC*IWTVWHTCCESHERLVFRNELPY*ATFTATWNTMNNNWKFKHAEHTNKFKCRQSLD*VIH  467
                +C  W V+++  ES E  V  N+      FT +W+ MNN  +F+    +++ K  +  +  IH
Subject   6022  TCEAWLVFYSGRESDESWVCVNQFTNQCAFTCSWDAMNNYGEFQLCAQSSETKLFKQTNYNIH  6210

Range 6: 5707 to 5931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 39/75(52%) 0/75(0%) Minus/Minus
Query        2  PEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP  226
                P       CLF    RTQL* A TSSS++     SP  *A  TSIA*LSMQ  +L  S+AM ILS  +*GFL +P
Subject   5707  PRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILSSTN*GFLYMP  5931

Range 7: 6132 to 6221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 17/30(57%) 0/30(0%) Minus/Minus
Query      389  LMYLPVRFGLSGTPAVKATKDSSSEMSSLI  478
                L+ LPVR G S  PAVKAT   S+ +SS I
Subject   6132  LIQLPVRLGSSSIPAVKATNLGSALISSRI  6221

Range 8: 5713 to 5943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 31/77(40%) 0/77(0%) Plus/Plus
Query        8  L*KASAYLGEDLHC*GNRQFGKLH**LCNRGILCLQTWRIIYRRDD*GGS*SAL*LRAFPGSE*AQNEVLNFWFV*G  238
                +*+AS   GED+H  G     +LH *LCNRG +CL +W    +  +*GGS   L L      E A  +V + W +*G
Subject   5713  I*EASIGAGEDVHRYGVE*SAQLHR*LCNRGGVCLLSW*EGGQSHE*GGSWRLLQLCTDNHKEQASXKV*SPWGL*G  5943

Nucleotide Sequence (915 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
92
184
276
368
460
552
644
736
828
915

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 3767 to 4681 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
695.3 bits(1511) 0.0 285/305(93%) 0/305(0%) Minus/Plus
Query        1  ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  915
                ICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF
Subject   3767  ICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  4681

Range 2: 3769 to 4680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
539.5 bits(1171) 0.0 250/304(82%) 0/304(0%) Plus/Minus
Query        2  KSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQ  913
                KSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNL LS LYLY  PSS+L+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI  +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA  TL  SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPV+PPSKHP +FSA SKLGK VI DPF E +SRADRLTFR+SSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP  SHLAQ
Subject   3769  KSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQ  4680

Range 3: 3767 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.5 bits(368) 0.0 76/163(47%) 0/163(0%) Plus/Minus
Query      427  IHF*VPFD*IC*SSPR*DECYKFSFRSLHEALV*ETLSSPKCAKHNCQFSLFDVRS*HSSKPRL*IVKFLITYHASQTPQQAPLKFFRPLKTWKICYL*PVQRKQVKG*SFNFSQLIHLYTLRPVTNLFDMPNVFICYVKQSRYAPARINNLNFAIDITFGTD  915
                IHF + FD*IC*S+   ++ Y+F+ R  HE LV ETL SPKC KH+ QF   ++ S ++ KPR  I + LITY+AS  P Q  L+ F PLK W++ Y  P+  K+++G S +  Q IH Y LR +T   +MP V I YVKQ R    RIN+ N +I ITF  +
Subject   3767  IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSAN  4255

Range 4: 4301 to 4681 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 73/127(57%) 0/127(0%) Plus/Minus
Query        1  EVMHIVEDCIISKGCSH*TFFEVTWQSRFKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP  381
                +VMHI+EDCIIS+  SH   FEVTWQS F+H ++KPPA  V+PI  + +Q +YVTL S QN  I LR+ICALT ITSK +ES+T  NK+ *IDV+RR+ L+ IK+H + SL +CNF KE+ K   IP
Subject   4301  KVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP  4681

Range 5: 4285 to 4680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 69/132(52%) 0/132(0%) Minus/Plus
Query        2  IKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEVARRKVI*VQLGEPEVCKSDV*I*TAMSLQKRFNDCSLC*LCNLPQYA*L  397
                +KEG +GC   *  P*+S R +GW L D **   + SW+HRSM + Y+ * FH +CW*S+SKHI* +K    FG * E*H   A  + +*V   + EVC+ +V I TAMSLQK  +DC   *LCNLP YA*L
Subject   4285  VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*L  4680

Range 6: 3778 to 4239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 69/154(45%) 0/154(0%) Minus/Plus
Query      443  M*CQWRN*GY*SGRAHICSV*HNK*TH*ACRKDW*RASKYKGG*AAKS*TISP*PAFSERVKDNIFSKF*EGGKTSGVLAGGFDWRDK**EI*RFKALACWSVNF*HQTKRIDSCAWHIWGWKEFPIQELHEEI*RKICNIRLT*ASSSKFNQK  904
                M* +WR+*  *S   + C V*HN * H AC ++ *  S++K G* A+   I P   F+E V +N+  K * G K + + A G +WR K**E+   K LA W + +*+  K ID  AW+IWGW+EF +QE HE++*  I N+  +    SKFNQK
Subject   3778  M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK  4239

Range 7: 4350 to 4679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 58/110(53%) 0/110(0%) Plus/Minus
Query        3  SHAYCGRLHNQQRLQSLNLF*SDMAV*IQTSDLQTSGSPSCTYMTFLRATSICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  332
                SHAY GRLHNQ++ QS + F*SDMAV I+T   QTS     TY    +A  +CHS Q PK    F +HMCFD DHQQ +*K H  *   IDRC QE     HQ+S + QP
Subject   4350  SHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP  4679

Range 8: 3777 to 4256 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 73/160(46%) 0/160(0%) Plus/Minus
Query      426  HPFLGPF*LNLLELA*VRRMLQIFLQIXXXXXCIGNSFQPQMCQAQLSILFV*CQKLTLQQAKALNR*ISHHLSRQSNPPASTPEVFPPSQNLENMLSLTRSEKAGQGLIV*LFAAHPPLYFEARYQSFRHA*CVHLLCQTEQICARPD**PQFRH*HHI  905
                HPF   F*LNLL+    ++ L+I+ Q  S*+SC  NS QPQM QA+ SI   * Q    Q+AK L+ * SHHL RQ  P A+    F P+Q+L + L  T S K  +G I *  A HP L  E  Y   +HA C H LCQT Q     D*  Q  H +HI
Subject   3777  HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI  4256

Range 9: 3777 to 4190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 64/138(46%) 0/138(0%) Minus/Plus
Query      492  NVMSMAKLRLLIRAGAYLLCLT*QMNTLGMSKRLVTGLKV*RWMSCEKLNDQPLTCFL*TGQR*HIFQVLRGRKNFRGACWGV*LA**VMRNLTIQSLGLLECQLLTSNKEN*QLCLAHLGLERVSYTRAS*RDLKEN  905
                NV+ M +L+ LIR   +L CLT* M+T GM ++ V  L+ *+WM+C + +D P   F * G +*   Q L G K+ +  C G *LA *VMR+  +Q+LG L   LL  ++ N*  CL HLGL RVS TR S*+ L+ N
Subject   3777  NVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN  4190

Range 10: 4467 to 4679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 43/71(61%) 0/71(0%) Minus/Plus
Query        3  KAHMILKKIELFWVLNRVTY*GCSKESHIGTTWRAGGL*IRCLNLDCHVTSKKVQ*LQPLLIMQSSTICMT  215
                KAHM  K+I  FW L+RVTY  C +   IG T +AGGL* +C N DCHVTSK+ +*L   LIMQSS ICMT
Subject   4467  KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMT  4679

Range 11: 4317 to 4412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 19/32(59%) 0/32(0%) Minus/Plus
Query      270  LKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  365
                L+ SL KLQ *RL   * LM+ S  LL TSIY
Subject   4317  LRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY  4412

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 2

Range 1: 3451 to 4152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.0 bits(511) 0.0 108/234(46%) 0/234(0%) Minus/Plus
Query       70  LRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPC  771
                L  V   +++LL   G+ ITY P   RA +L   L GG TG IS   +ND       V  S    R L V+LGTFGAGKS L+K FM  ++G+ +T+VSPRR LA     D+++D   +     K++ + W V TFE FL +   ++ G  VI DEVQL+PPGY+DL L ++     I L GDPCQS YDS+KDR     E SDI ++LE K Y YN+ SRRFVN  +E RLPC
Subject   3451  LTAVTEESVELLRGCGTLITYQPDQGRALRLAKNLHGGQTGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPC  4152

Range 2: 3840 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 45/104(43%) 0/104(0%) Plus/Minus
Query       71  HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ  382
                HG   S + FT  RL  L LY   SS L +SL S  K+ LSF  S  L  GSP+++M        R RS  PGG S TSS IT  P    +   R  SKV T Q
Subject   3840  HGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ  4151

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 5

Range 1: 4360 to 4734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 59/125(47%) 0/125(0%) Minus/Plus
Query        1  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  375
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L +     I +AGDPCQS YDS  DR I    +SDI+R L G+SY++N+ S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4360  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF  4734

Range 2: 3820 to 4299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 65/160(41%) 0/160(0%) Minus/Plus
Query      436  ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  915
                IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L      G TGV+        K   A +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3820  ICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4299

Range 3: 4164 to 4265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/34(53%) 0/34(0%) Plus/Minus
Query      470  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVN  571
                LG+T V  FP D  M  L R+LFP PNVP   +N
Subject   4164  LGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN  4265

Range 4: 4503 to 4703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 28/67(42%) 0/67(0%) Plus/Minus
Query       32  SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA  232
                S+ + V     K  GSL   IGF NL L  L L   P   L MSL    KI  S   S  L  GSPA
Subject   4503  SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA  4703

Range 5: 4404 to 4463 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/20(75%) 0/20(0%) Plus/Minus
Query      272  RSM*PGGNS*TSSKITQ*PA  331
                RSM*PGGNS* SS  T *P+
Subject   4404  RSM*PGGNS*ISSMTTV*PS  4463

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 6

Range 1: 4363 to 4737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 58/125(46%) 0/125(0%) Minus/Plus
Query        1  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  375
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R+L G++Y++N+ S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEF  4737

Range 2: 3823 to 4095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 36/91(40%) 0/91(0%) Minus/Plus
Query      643  ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  915
                IC   D  GE+ ++N GGRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L   L  G TGV+
Subject   3823  ICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL  4095

Range 3: 4153 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      436  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  585
                +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4153  VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 4: 4161 to 4280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query      458  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  577
                AR  LGET V  FP D  M  L R+L P P VP    N L
Subject   4161  ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL  4280

Range 5: 4506 to 4706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 30/67(45%) 0/67(0%) Plus/Minus
Query       32  SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA  232
                S+ + V     K HGSL +  GF N  L  L L   P + L MSL    KI LS   S  L*QGSPA
Subject   4506  SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA  4706

Range 6: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 15/35(43%) 0/35(0%) Plus/Minus
Query      272  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  376
                +S+ PGG S* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 7

Range 1: 4359 to 4733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 58/125(46%) 0/125(0%) Minus/Plus
Query        1  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  375
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G+SY++N+ S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF  4733

Range 2: 3819 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 33/91(36%) 0/91(0%) Minus/Plus
Query      643  ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  915
                IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG+++ Y PS +RA  L      G TGV+
Subject   3819  ICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL  4091

Range 3: 4149 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      436  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  585
                + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4149  VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 4: 4157 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/36(50%) 0/36(0%) Plus/Minus
Query      470  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  577
                LGET V  FP D  M  L ++LFP PNVP   ++ L
Subject   4157  LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL  4264

Range 5: 4502 to 4729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 32/76(42%) 0/76(0%) Plus/Minus
Query        5  SCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA  232
                SCIL +   S+ + V    L+  G+L  N GF NL L  L L   P   L +SL    K+ LS  +S  L*QGSPA
Subject   4502  SCILSQRVYSSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA  4729

Range 6: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      272  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  376
                +S+*PGG S* SS  T *P+          SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Range 7: 4359 to 4733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 34/125(27%) 0/125(0%) Plus/Minus
Query        1  EVMHIVEDCIISKGCSH*TFFEVTWQSRFKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGND  375
                E+++ V   ++    S     EV  QS  KH I +P    +  +    E    +T  ++++  I   +I  LTR+TS  +  +    K   I +  R+ LNFI  +++T L A     E FK  D
Subject   4359  ELLYTVPKSVLLLI*SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD  4733

Nucleotide Sequence (483 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
483

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
329.6 1012.3 47% 1.145e-89 43% NC_001948
113.3 291.1 56% 4.739e-38 36% NC_008552
110.1 243.3 47% 3.827e-39 49% NC_028111
115.6 264.1 29% 1.086e-39 43% NC_009991
111.0 239.2 45% 2.281e-37 48% NC_009892

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 758 to 1204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
329.6 bits(713) 0.0 134/149(90%) 0/149(0%) Plus/Plus
Query        2  MLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL  448
                +LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSGSLL
Subject    758  LLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSGSLL  1204

Range 2: 760 to 1203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 117/148(79%) 0/148(0%) Minus/Minus
Query        4  SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKS  447
                S+EPLLPQ +TSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKHRM E +RL IGVKL+K   NFE   ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS
Subject    760  SKEPLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMSTE*REPSGRTTDLALSRYLHDKGCEYISFQLPSGAKS  1203

Range 3: 760 to 1212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 65/151(43%) 0/151(0%) Plus/Plus
Query        4  ALCSGW*LV*NVFTTIVK*VFA*S*ISGLI*WFTLCGRCPPFKILPSLIELHPNQ*SSSF*HSVFLWF*RHRH*GSGASKSRYA*LLSGAS*CCY*NISLFENPQKT**GICRGEIASAYRQAYWKGD*IH*GFCFTCHKLWKKWLSAFIQ  456
                AL + W L *+V TT V  + A   I     W TL G     KI   L   HP  *S  F H++F W   +RH  S  SK R+A LL   S*CC *+ISLFEN Q+  *G+CRG+ ++ +R+ + +GD ++ GF  T +KLW++WL A+ Q
Subject    760  ALRTRWQLE*DVLTTFVMQIPAQGQICSSARWLTLLG*HHSLKI*SPLA*FHPYG*SFDFKHAMFFWLRCNRHKRS*TSKPRHAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEWLFAYAQ  1212

Range 4: 759 to 1100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 51/114(45%) 0/114(0%) Minus/Minus
Query        3  PRQIPYQVF*GFSNKDIF**QHHDAPESSYAYRDLEAPDP*CRWRQNQRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPLI*L*ANTYLTMVVNTFHTSYHPEQRA  344
                PRQ PY   * FSNKDI * QHHD   S+ A R LE  D  C   ++Q+N  C K +DY  G*+  S   IL+   +P SV+H+    I  *A   +T VV+T H+S H  +RA
Subject    759  PRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE*CQPSSVSHRAELQIWP*AGICMTKVVSTSHSSCHLVRRA  1100

Range 5: 1137 to 1211 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 13/25(52%) 0/25(0%) Minus/Minus
Query      381  WMKAESHFFHNL*QVKQNPQ*I*SP  455
                W  A+SH  HNL  V++NP+*  SP
Subject   1137  WA*AKSHSSHNLLLVRKNPR*TLSP  1211

Range 6: 759 to 1106 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 51/116(44%) 0/116(0%) Plus/Plus
Query        3  CSLLRMVTGVKCIHNHCQVGICLKLDQWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSLVLTPSALRIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKNLIRNLPRRN  350
                CS  +M TG++C HN C    C + D     M HA R  S  QN   T   SP  +IF*  T  V L     A +I +L* A C  A + IMML L+YIFI*E S++ IR+LPR++
Subject    759  CSSHQMATGMRCTHNLCHADTCSRPDL*FCPMAHATRLTSFTQNLVTTCLVSPLWVIF*LQTCDVFLASMQ*A*KILNL*AAACTVASQYIMML*LRYIFI*ELSRSQIRSLPRQS  1106

Range 7: 881 to 1210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 49/110(45%) 0/110(0%) Minus/Minus
Query      125  G*KQRATSSTTYDK*SKILNEFNLPSSRLVDKLTQFRLGRFLIRFFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQILNADGVKTRETPNVRN*KIIDWGEAQ*VMAEF*M  454
                G KQRAT  T Y  * KIL++  LP      +L++  LGR LI   E SQIKIY S NIMM+ +A +H A *R +I  A  ++ R+T +V + KI   GE + V+ +F*+
Subject    881  GHKQRATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*V  1210

Narcissus symptomless virus, complete genome

Sequence ID: Length: 8281 Number of Matches: 4

Range 1: 881 to 1186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 51/102(50%) 0/102(0%) Plus/Plus
Query      143  HLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL  448
                H L+     + +   IR F  FDA+    L+PL R +   FP+  +V++KIY YLRTL+KPD +SA AKL QLI  PTG EIKFIE+FA LVI  G+  S+L
Subject    881  HHLTSITKGDAITEEIRTFGNFDAVSASHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLIVDPTGFEIKFIEEFAPLVIETGKMRSIL  1186

Range 2: 749 to 901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 25/51(49%) 0/51(0%) Plus/Plus
Query        8  FAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  160
                + PDG   E Y+QPL   +LLK + + L +G  Y VD++HSKF HHL S T
Subject    749  YYPDGVHAEGYTQPLDCSFLLKTKKIQLDNGEVYCVDLVHSKFSHHLTSIT  901

Range 3: 926 to 1147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 27/74(36%) 0/74(0%) Minus/Minus
Query      188  SKILNEFNLPSSRLVDKLTQFRLGRFLIRFFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQILNADGVKTRETPN  409
                S+ LN+FN  +SR+  +LTQF  G   +R  +GS+I I F+NNI  +R++  +  T   Q+   + +K  E+P+
Subject    926  SEFLNKFNFETSRVNYELTQFSYG*LNVRLLKGSEISINFANNINTNRESLTNVPTKWFQM*GRNSIKITESPD  1147

Range 4: 1000 to 1179 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 31/60(52%) 0/60(0%) Minus/Minus
Query      262  EPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK  441
                E +LP  +T  A SS+NLIS PVG ++S* N A AD  SGF RVL+   IL+ T    GK
Subject   1000  ERILPVSITRGANSSINLISKPVGSTMS*PNLAMAD*TSGF*RVLRYL*ILLITLILIGK  1179

Nerine latent virus isolate Marijiniup 4, complete genome

Sequence ID: Length: 8334 Number of Matches: 3

Range 1: 960 to 1232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 47/91(52%) 0/91(0%) Plus/Plus
Query      176  LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL  448
                +  ++R F  FDA+    L+PL R +   FP+  +V++KIY YLRTL+KPD +SA AKL QL+  PTG EIKFIE+FA LVI  G+  S+L
Subject    960  ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGKMRSIL  1232

Range 2: 795 to 947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 27/51(53%) 0/51(0%) Plus/Plus
Query        8  FAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  160
                + PDG   E Y+QPL S +LLK + + L DG  Y VD++HSKF HHL+S T
Subject    795  YYPDGVHSEGYTQPLDSSFLLKTKKIQLDDGETYCVDLIHSKFSHHLISIT  947

Range 3: 974 to 1231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 42/86(49%) 0/86(0%) Minus/Minus
Query      190  SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHR  447
                S E +LP  +T  A SSMNLIS PVG + S* N A AD  SGF RVL+   IL+ T    GK   I   RG R     ASK  K R
Subject    974  SIERILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGKA*PIFLPRGLRCPADTASKLPKVR  1231

Phlox Virus B, complete genome

Sequence ID: Length: 9058 Number of Matches: 4

Range 1: 940 to 1203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 49/88(56%) 0/88(0%) Plus/Plus
Query      185  NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL  448
                N+R F  FDA   + LEPL+  +  CFPV  +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS     S+L
Subject    940  NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIISTNTIKSIL  1203

Range 2: 766 to 918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 28/51(55%) 0/51(0%) Plus/Plus
Query        8  FAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  160
                F PDG   E Y QPL + YLLKA+ ++L DG  Y VDV+ SKF HHL++ T
Subject    766  FYPDGVRTEGYLQPLKNGYLLKAKRILLPDGGVYHVDVVQSKFAHHLIAIT  918

Range 3: 963 to 1175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 32/71(45%) 0/71(0%) Minus/Minus
Query      208  MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMAS  420
                M ++AKS  NLIS P G  I+  + A AD  SGF  V + RY L TTS  TGKQ     + GS     +AS
Subject    963  MINDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS  1175

Range 4: 765 to 905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 20/47(43%) 0/47(0%) Minus/Minus
Query        7  K*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAK  147
                K*  N    TST *  PS      ALS+    NGC   S   PSG K
Subject    765  K*CANLLCTTSTW*TPPSGSNIRFALSR*PFFNGCR*PSVLTPSG*K  905

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 3

Range 1: 935 to 1189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 43/85(51%) 0/85(0%) Plus/Plus
Query      173  LLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISC  427
                L+   +R FSGF+A   K + PL R + SCFP+H +++ +IY YLRTLKKPD +S+ AKL Q++  PTG EIKF E+F+ L+++C
Subject    935  LINQKMRPFSGFEATSSKGISPLMRKVGSCFPIHPNLILRIYRYLRTLKKPDLQSSMAKLSQVLPNPTGPEIKFFEEFSKLLLNC  1189

Range 2: 767 to 925 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 26/53(49%) 0/53(0%) Plus/Plus
Query        2  MLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  160
                +++APDG   E Y QPLS  YLLK   + L DGS Y++D++ S F HHL+  T
Subject    767  LIYAPDGCMQEAYIQPLSGCYLLKTSGIELPDGSFYSLDLVKSTFSHHLICIT  925

Range 3: 958 to 1188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 37/77(48%) 0/77(0%) Minus/Minus
Query      196  QLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEK  426
                QL  +   SS NLIS PVG   +* +FA  D  SGF  VLK*RYIL     C GKQ    R++G      +ASKP K
Subject    958  QLSNNFENSSKNLISGPVGFGRT*LSFAMDDWRSGFFSVLK*RYILRIKFGCIGKQEPTLRIKGEIPFEEVASKPLK  1188

Nucleotide Sequence (544 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
55
110
165
220
275
330
385
440
495
544

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
352.1 1441.5 26% 2.352e-96 63% NC_001948
114.7 139.1 23% 2.176e-26 45% NC_009892
84.5 137.8 22% 5.575e-26 36% NC_024449
85.8 179.2 33% 9.345e-25 32% NC_020996
86.3 133.6 22% 9.344e-25 31% NC_002468

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 6815 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
352.1 bits(762) 0.0 145/150(97%) 0/150(0%) Minus/Plus
Query       93  NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHRKKLVIMQ*NAFSAAC  542
                NILDEYLSVQD SGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLD VIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHR+KL+IMQ*+AFSAAC
Subject   6815  NILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAAC  7264

Range 2: 7018 to 7263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 74/82(90%) 0/82(0%) Plus/Minus
Query       94  QAAEKAFYCIMTNFFLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPRTSHGNLNSELCATARSTASLPKHISTPSTSRVKGD  339
                QAAEKA YC++ NF LCLVAAM*NQCLSSGVGSLDFKRVTTLKVEP TS GNLNSELCATARSTASLPKHISTPSTS VKGD
Subject   7018  QAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGD  7263

Range 3: 6817 to 6969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 44/51(86%) 0/51(0%) Plus/Minus
Query      388  EERYLQVFTPNLQVLDLMKCASFGILIFWYGSENSTSKPEMS*TDKYSSSM  540
                EERYLQVFTPNLQV DLMKCAS G+L+FWYGSENSTSKPE S TDKYSSS+
Subject   6817  EERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSI  6969

Range 4: 6815 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.0 bits(524) 0.0 103/150(69%) 0/150(0%) Plus/Minus
Query       93  AGC*KGILLHNDQFLPMSCGSDVKPVPVLWGWVS*FQKGYHIEG*TSNLTRQLEFRVVRNSEIYRLLAKTYQHPFNI*SEGRSHNDVVQPVAANFKTERGKVFASVHTKPTSFGLNEMRLFWNTDILVRV*KQYIKTRNVLNGQVLIKYV  542
                AGC*KGILLH+ QFLP+SC S+VKPVP+LWGW+S*FQK Y ++ *TSN TR  EFRVVRNSEI+ LL K Y HPFNI* + R HND VQ V AN KTE GK+FAS+H KPTSF L+EM LF N D+LV V +Q+IKT  +L+GQVLIKY+
Subject   6815  AGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYI  7264

Range 5: 7009 to 7275 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 56/89(63%) 0/89(0%) Minus/Plus
Query       82  HCGIALHSRC*RGADMFWQGGGRSRCCAQL*IQVAV*GSRFNLQCGNPFEIKRPNPRGQALVLHRCHKT*EEIGHYAVKCLFSSLLLSK  348
                HCG+A ++RC*RGA+M W GG  SRCCAQL*IQ+ +*  RFN    N FEIKR NPRG ALVLH C+KT  EI ++AV+CLFSSL + +
Subject   7009  HCGVAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQ  7275

Range 6: 6817 to 6969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 33/51(65%) 0/51(0%) Minus/Plus
Query      388  HT**VLVRSRHFGF*CTVFRPVPEYQYSKRGAFH*VQNL*VWCEHLQIPFL  540
                +T**VLVR R F F*C V  P+P++Q+S RG FH V+NL*VW E+LQI FL
Subject   6817  YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFL  6969

Range 7: 6819 to 7265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.1 bits(391) 0.0 101/149(68%) 0/149(0%) Minus/Plus
Query       92  YLMSTCPFKTFRVLMYCFQTRTRISVFQKRRISLSPKLVGLV*TLANTFPLSVLKLAATGWTTSLWDRPSL*MLKGC*YVXXXXXXXXXXXXXLNSSCRVRFEVQPSMW*PF*NQETQPQRTGTGFTSLPQDIGRNWSLCSKMPFQQPA  538
                YLMSTCP K F+VLM C +T T+ S F KR IS S KLVGL * LAN FP SVL+LA T WT SLW R   *MLKGC*Y L RR+ ISLLRTTLNS+  V+ EVQ    * F*NQE QPQR GTGFT L QD GRN   CSKMPFQQPA
Subject   6819  YLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPA  7265

Range 8: 7032 to 7262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 54/77(70%) 0/77(0%) Plus/Minus
Query       95  RLLKRHFTA**PISSYVLWQRCKTSACPLGLGLLISKGLPH*RLNLEPHTAT*IQSCAQQRDLPPPCQNISAPLQHL  325
                RLLKRH TA*  IS  VL Q+CKTSA PLGL LLISK L  *+LNL  H   *IQSCAQQRD  PP Q+I APLQHL
Subject   7032  RLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHL  7262

Range 9: 6819 to 6971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 34/51(67%) 0/51(0%) Plus/Minus
Query      386  KRKGICKCSHQTYKFWT**NAPLLEY*YSGTGLKTVHQNPKCLERTSTHQV  538
                +RK ICK S QTYKF T**N PL E *  G G +T HQN K L RTSTHQV
Subject   6819  RRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQV  6971

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 6731 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 51/113(45%) 0/113(0%) Minus/Plus
Query      201  ILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLL  539
                ILDEYLS +  +GFD  FSDP+QN      AHF+   + RFG NT   L S G+ V+S   D++I  + F  ++EG +IC  K   D    ++ E++LPC+VRGSTF VVT +
Subject   6731  ILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 2: 7109 to 7150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 9/14(64%) 0/14(0%) Minus/Plus
Query      120  YIAATRHRKKLVIM  161
                YIA TRH KK+ I+
Subject   7109  YIALTRHSKKIQIL  7150

Cherry twisted leaf associated virus isolate CTLV_8431, complete genome

Sequence ID: Length: 8431 Number of Matches: 2

Range 1: 6456 to 6647 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 35/64(55%) 0/64(0%) Minus/Plus
Query      351  NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDD  542
                N+LDEYLS     GFD+L SDPYQN   P  AHFI S T RFG + CKYL+  GF++ S   +D
Subject   6456  NVLDEYLSGPSYEGFDLLLSDPYQNFRKPLTAHFINSCTYRFGPSVCKYLNLLGFEIVSGREED  6647

Range 2: 6651 to 6827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 21/59(36%) 0/59(0%) Minus/Plus
Query      177  DVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPE  353
                ++I G  F  ++ G +ICF KE  DL   H+++F  PC++RG+ F  VT + +     E
Subject   6651  ELIFGKIFGGEIRGEIICFEKEVEDLLNKHSAKFHHPCDLRGAEFEHVTFISAHSDLQE  6827

Cherry rusty mottle associated virus isolate 95CI192R3, complete genome

Sequence ID: Length: 8397 Number of Matches: 3

Range 1: 6427 to 6603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 34/59(58%) 0/59(0%) Minus/Plus
Query      366  NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSS  542
                N+LDEYLS     GFD+L SDPYQN   P  AHFI S T RFG + CKYL+  GF+++S
Subject   6427  NVLDEYLSGPSYEGFDLLLSDPYQNFRKPLTAHFINSSTYRFGHSVCKYLNLLGFEINS  6603

Range 2: 6622 to 6798 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/59(32%) 0/59(0%) Minus/Plus
Query      177  DVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPE  353
                ++I G  F   ++G +ICF KE  +L   H++++  PC +RG+ F  VT + +     E
Subject   6622  ELIFGRIFEGTIKGEIICFEKEVQELLDNHSAKYHHPCNLRGAEFEHVTFISAHSDLQE  6798

Range 3: 6427 to 6618 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 24/64(38%) 0/64(0%) Plus/Minus
Query      351  VVQPVAANFKTERGKVFASVHTKPTSFGLNEMRLFWNTDILVRV*KQYIKTRNVLNGQVLIKYV  542
                ++  +  + KT   KVF +  TKP S  ++EM   W  +IL+R+ KQ IKT    + Q+L+K V
Subject   6427  ILLSLRVDLKT**VKVFTNRMTKPISRTIDEMSSKWFAEILIRIGKQQIKTLVRRSRQILVKNV  6618

Cherry necrotic rusty mottle virus, complete genome

Sequence ID: Length: 8432 Number of Matches: 2

Range 1: 6462 to 6638 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 33/59(56%) 0/59(0%) Minus/Plus
Query      366  NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSS  542
                N+LDEYLS     GFD+L SDPYQN   P  AHFI S T RFGV+ C++L+  GF+++S
Subject   6462  NVLDEYLSGPSYEGFDLLLSDPYQNFRKPLTAHFINSNTYRFGVSVCQFLNKLGFEINS  6638

Range 2: 6657 to 6833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 18/59(31%) 0/59(0%) Minus/Plus
Query      177  DVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPE  353
                ++I G  F  ++ G +ICF  E  ++   H+++F  PC +RG+ F+ VT + +     E
Subject   6657  ELIFGKVFGGEIRGEIICFEAEVEEILRKHSAKFHHPCNLRGAEFDHVTFITAHQDLQE  6833

Nucleotide Sequence (421 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
421

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
260.0 792.2 33% 8.7e-69 40% NC_001948
55.1 55.1 20% 3.904e-07 33% NC_009383
56.5 56.5 19% 1.505e-07 28% NC_009892
55.1 55.1 19% 3.904e-07 28% NC_014821
54.7 54.7 19% 5.363e-07 27% NC_018714

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 1193 to 1561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 104/123(85%) 0/123(0%) Minus/Plus
Query       27  GSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSWFGLGNVHFNRQRAPYSLGVSHWLNSPFSVEHKFAGAIS  395
                GSLLMPNISKLVISF CRMMPNALARLSSSFRE SLDSFVY+LEPFNFSV+L+D+TPDFFEHLFLFSCLNELIEED+EEVMD+SWFGLG++ FNRQRAP+ LG S+WLNS FSVEHKF+G I+
Subject   1193  GSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTIN  1561

Range 2: 1192 to 1560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 84/123(68%) 0/123(0%) Plus/Minus
Query       28  LMAPANLCSTENGELSQCDTPSEYGAL*RLKCTLPSPNHELXXXXXXXXXXXXLRQENKNRCSKKSGVTSIRLTEKLKGSRA*TNESSEVSRKLEDNLAKALGIIRHKNDITSFEILGINREP  396
                LM P NLCSTEN ELSQ + P + GAL RL C  PSPN ELS+TSS SSSI+S RQE +N+CSKKSGV S +LTEKLKGS   TNESSE SRKLE++LA A GIIR KND+T+ E+LGI++EP
Subject   1192  LMVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKEP  1560

Range 3: 1184 to 1558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 56/125(45%) 0/125(0%) Plus/Minus
Query       30  DGTCKLMLDREWRVKPV*YP**IWSPLTVKVHIAKSKP*TIHNLLNVLFNQLIEAGEQK*VLKEIRGHIYQANRKIERLKGVDKRVK*SFAET*RQPG*GIRHHPTQK*YHQL*NIRHQ*GTTLP  404
                DG  KL+L+ ++ V+P+* P     PL +++ + KSKP  +H+L NVL +QLI AGE+K*+LKEIR +I+  N KI+ LK V K +  + ++  R+PG  I HHP ++*Y QL N+ H+   T P
Subject   1184  DGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRATPP  1558

Range 4: 1206 to 1559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 55/118(47%) 0/118(0%) Minus/Plus
Query       29  CLIFQSW*YHFCVG*CLMP*PGCLQVSAKLHLTRLSTPLSLSIFRLA**M*PLISLSTYFCSPASMS*LKRTLRRLWIVHGLDLAMCTLTVRGLHIH*GYHTGLTLHSLSSISLQVPS  382
                C  F SW YH   G*C M  PG L     +    L T LS  IF L * +* LISLS YF SPA MS* +RTL+R W + GLDL       RG     G H G T +   S S Q PS
Subject   1206  CPTFLSWSYHSFAG*CQMHSPGSLLAFESVR*IHLCTHLSPLIFPLI*WI*LLISLSIYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARGPRSFLGLHIGSTPNFQLSTSFQAPS  1559

Range 5: 1192 to 1581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 52/130(40%) 0/130(0%) Minus/Plus
Query        7  WFPIDA*YFKAGDIIFVSDDA*CLSQVVFKFPRNFT*LVCLRP*AFQFFG*PDRCDP*FL*APIFVLLPQ*AD*RGH*GGYG*FMVWTWQCAL*PSEGSIFTRGITLA*LSILCRA*VCRCHQPTKHTQH  396
                W    A +F  G II + DDA C  Q +F   R F   +C+  *A  FF *    + *FL*A I +LLP+* D  G * G+G F+VWTW   +   EG + +    LA L I   A V R HQ + H  +
Subject   1192  WLFAYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVLSWVFILAQLQIFS*AQVFRHHQFSNHASY  1581

Range 6: 1215 to 1559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 49/115(43%) 0/115(0%) Plus/Minus
Query       29  *WHLQTYARQRMES*ASVIPLVNMEPSDG*SAHCQVQTMNYP*PPQCPLQSAH*GRRTKIGAQRNQGSHLSG*PKN*KAQGRRQTSQVKFRGNLKTTWLRH*ASSDTKMISPALK  373
                *W L+T A+ ++ S*A++       PS  *    QVQT N P*P Q P +S H GRR +I AQRNQ  +   * KN*+AQ   Q +      + K  W  H ASS  +MI P  K
Subject   1215  *WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINAQRNQELYPLN*RKN*RAQVSTQMNLANTLES*KRAWRVHLASSGKRMI*PT*K  1559

Phlox virus S, complete genome

Sequence ID: Length: 8590 Number of Matches: 1

Range 1: 1190 to 1441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 28/84(33%) 0/84(0%) Minus/Plus
Query      141  SLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  392
                +L+ P + K  +      MP+ LA   SS  E SLD FV  +EPF F V L+DV  ++  +  LFS   E    D+ ++++  +
Subject   1190  TLIKPEVIKQFLGRWLGKMPHVLAVRFSSVAEVSLDEFVSQMEPFTFQVKLVDVDWNYHHNWDLFSKAEEDYGVDVCDLLNEGF  1441

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 1208 to 1453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 23/82(28%) 0/82(0%) Minus/Plus
Query      141  LMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  386
                L+PN+ KL+ +F   + P+++AR    F++ SLD+F+  +E FNFSV    ++  + + +       ++   DI+ +    W
Subject   1208  LLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW  1453

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 1

Range 1: 1204 to 1449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 23/82(28%) 0/82(0%) Minus/Plus
Query      141  LMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  386
                ++P++ ++V  F  ++ PN +AR     ++  LD+F+  LE F+F V   ++T D+ + L   +      + D++E  DS+W
Subject   1204  MLPDMKRIVQGFFLKLFPNPIARNFKVVQQLHLDNFIETLEDFSFCVPTEELTLDWKDDLEFVNLTFGETDFDLDESFDSTW  1449

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 1204 to 1449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 22/82(27%) 0/82(0%) Minus/Plus
Query      141  LMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  386
                ++P++ ++V  F  ++ PN ++R     ++  LD+F+  LE FNFS++  D++ ++ + L   +     I+ ++EE   S+W
Subject   1204  MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW  1449

Nucleotide Sequence (350 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
350

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
245.8 804.6 31% 1.232e-64 46% NC_001948
173.4 328.1 30% 7.66e-43 32% NC_009892
170.6 264.7 32% 5.15e-42 51% NC_003462
164.6 315.7 32% 3.199e-40 29% NC_014821
165.1 310.7 30% 2.328e-40 31% NC_009991

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 5222 to 5542 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 100/107(93%) 0/107(0%) Plus/Plus
Query        1  ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  321
                ESTRARWVGKMALKE+REVRCG+E TQQFFDEHRGG GEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASH
Subject   5222  ESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASH  5542

Range 2: 5224 to 5538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.6 bits(403) 0.0 80/105(76%) 0/105(0%) Minus/Minus
Query        3  LAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLALVD  317
                LAFNG  DRK S++NFP G ARLS AAST GFEN +RFRTA++KV+ES PLCLG*MLS  S ALL+CSP+PPLCSSKNC*V+S P RTSR SFKAI PTHLALVD
Subject   5224  LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVD  5538

Range 3: 5222 to 5548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 50/109(46%) 0/109(0%) Minus/Minus
Query        1  G*VASIQWDF**ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSPG*L  327
                G +   QWDF *E +  EF +    PQ  SF+L L K    SD H +   +I+ M  +NA K  T IAQLLT + P+ IKELLS  + T++L +LFQ HF +P  PG*L
Subject   5222  GIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*L  5548

Range 4: 5223 to 5531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 47/103(46%) 0/103(0%) Minus/Minus
Query        2  SMGLLIGKCRAGIFRKALHASASQLPPVALKTLSVFGRPLKK*WSHYPYV*DKCSQNVHKHCSIAHPCPPCVHQRIAELSHAHIVPHDALSKPFSQPI*PWLT  310
                SMG  IGK    I      AS  QL P A K    FG+P  +  +H+ Y   KC Q  H HCS+AH   P  HQRI E  H H  P D LS+PF  P  PWLT
Subject   5223  SMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLT  5531

Range 5: 5224 to 5532 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 48/103(47%) 0/103(0%) Plus/Plus
Query        3  VNQG*MGWENGFERAS*GTMWA*DNSAIL**TQGGHG*AIEQCL*TF*EHLS*T*G**LHHFFNGRPKTLKVFKATGGSCEAEACKALRKIPARHFPIKSPIE  311
                VNQG +G  NG ER S G +W *++S IL**  G + *A EQC+*  *+HL   *  * ++  +G PK  ++F+A G SC+ EA + + +I  R FPI++PIE
Subject   5224  VNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIE  5532

Range 6: 5223 to 5549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 52/109(48%) 0/109(0%) Plus/Plus
Query        2  SQPGLDGLGKWL*KSIVRYDVGMRQLSNSLMNTGGAWVSN*AMLVNVLRAFILDIRVMTPSLF*WPSENA*SFQSHRWKLRS*GVQSLTENSCSTLSYQKSH*MLATYP  328
                SQPG  G  KW *KSI R  V M+ L+NSLM+ G   VSN*AM V  L+AF   I+ M      W SE+  +F+S R KL +*G  +   NS   LSY KSH*     P
Subject   5223  SQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIP  5549

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 3

Range 1: 5120 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.4 bits(372) 0.0 68/107(64%) 0/107(0%) Plus/Plus
Query        1  ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  321
                E+ RARWV K+  KE RE R GHE T+QF DEH    G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +PL   H
Subject   5120  EAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKH  5440

Range 2: 5128 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 51/99(52%) 0/99(0%) Minus/Minus
Query        9  GTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLAL  305
                G + RKV  RN P G A L+ A S  G+E    F TAI+ V ES+PLCLG*++S  S AL+ C P   LCSS NC V S P   S  SF +I  THLAL
Subject   5128  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLAL  5424

Range 3: 5129 to 5413 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 30/95(32%) 0/95(0%) Minus/Minus
Query       10  *ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSP  294
                *E +++EF+    +P   +F+ WL +   F + H*+ D V  LM RIN+   F+ +  L      +F+ +LLS LM    L+     +F +P  P
Subject   5129  *EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCP  5413

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 2

Range 1: 5271 to 5591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.6 bits(366) 0.0 68/107(64%) 0/107(0%) Plus/Plus
Query        1  ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  321
                E+ RA+WV K+  +E RE R G  TT+QF D+H    G++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VPLN+SH
Subject   5271  EAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSH  5591

Range 2: 5279 to 5587 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 53/103(51%) 0/103(0%) Minus/Minus
Query        9  LAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLAL  317
                L F GT  RKVSSRN P G A  SFA S  G E    F TAI+ V  S+PLCLG + S RS AL+N  P   L SS NC VV  P R S  S +    TH AL
Subject   5279  LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVNS*PRFLL*SSVNCSVVMSPMRNSLSSLEINL*TH*AL  5587

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 3

Range 1: 5275 to 5595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 66/107(62%) 0/107(0%) Plus/Plus
Query        1  ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  321
                E+ RA+WV ++  KE RE R G  TT+QF DEH    G +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VPL+  H
Subject   5275  EAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKH  5595

Range 2: 5283 to 5591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 54/103(52%) 0/103(0%) Minus/Minus
Query        9  LAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLAL  317
                L   GT  +KVS RNFP G A L+ A S  G E    F TAIK V  S+PLCLG*M S  S AL++ SP+  LCSS NC VV  P R SR S  +   TH AL
Subject   5283  LRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*AL  5591

Range 3: 5284 to 5589 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 30/102(29%) 0/102(0%) Minus/Minus
Query       10  SIQWDF**ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSP  315
                +IQ D   + ++++FS     PQ   F  W  + * F   H*+  G+ +LMS +N    F+ + +       VFI EL    +P S  ++L      +P SP
Subject   5284  AIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSP  5589

Phlox Virus B, complete genome

Sequence ID: Length: 9058 Number of Matches: 3

Range 1: 4885 to 5202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 66/106(62%) 0/106(0%) Plus/Plus
Query        1  ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNAS  318
                ES RA+WV K+  KE REVR GH  ++QF DEH    G+QL+NA ERFE+IYPRHK ND++TF+MAV+KRLKFS+P  E AKL  A PYGKF+L  FL K+P+N S
Subject   4885  ESVRAKWVHKILAKEFREVRIGHLVSEQFTDEHPREQGKQLTNAAERFEAIYPRHKANDTVTFMMAVKKRLKFSRPATEKAKLVEAMPYGKFMLKEFLKKIPMNKS  5202

Range 2: 4887 to 5195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 49/103(48%) 0/103(0%) Minus/Minus
Query        3  FNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLALVD  311
                F G F R   + NFP G A  + A S  G EN   F TAI  V  S  LCLG + SKRS AL++C P    CSS NC     P  TS  SF  I  THLAL D
Subject   4887  FIGIFLRNSFNMNFPYGIASTNLAFSVAGLENLSLFLTAIMNVTVSFALCLGYIASKRSAALVSCLPCSRGCSSVNCSETRWPILTSLNSFARILCTHLALTD  5195

Range 3: 4885 to 5196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 32/104(31%) 0/104(0%) Minus/Minus
Query        1  IQWDF**ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSPG*L  312
                + WD   E  + EFS+  C  Q   F  W *K     D H +   +I L+ R+   K    I +LLT    VFI +LL   M     +     +  +P  P *L
Subject   4885  VHWDLLEELFQHEFSIWHCLHQFSFFCCWS*KFKPLLDSHHERHSIIRLVPRVYCFKALRRIGELLTLFARVFIGKLLRNEMAYPDFSKFLCQNLMHPLGPD*L  5196

Nucleotide Sequence (405 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
41
82
123
164
205
246
287
328
369
405

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 3272 to 3673 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.1 bits(642) 0.0 120/134(90%) 0/134(0%) Plus/Plus
Query        3  FPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSGPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL  404
                F VPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESE  V   LS P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL
Subject   3272  FSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL  3673

Range 2: 3271 to 3672 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 97/134(72%) 0/134(0%) Minus/Minus
Query        2  K*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVIMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGPERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQLPSPGTGK  403
                +* +TSTSRLPSA+AMAVIMQP  GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LTWC  QN AIISFSA*AFS +C  + G ER+  T  SLST D IPAF+A PSVL +KPTECQKQLPSPGT K
Subject   3271  R*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEK  3672

Range 3: 3272 to 3670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 62/133(47%) 0/133(0%) Minus/Minus
Query        3  VIEHVYLTPSKC*CNGCNHAAIKRGTRLKMI*LQTQNST*RPLIFPKFPAHLIFWCYNDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FAFHERSYSCLQSQTVGAEKKAN*VPKAVTITRHRK  401
                +I H+  TPSKC* NGC+HA I+ G  L++I* + +NST* PL FP+FP + IFWC + + ++VPNAE* +H I  ISI  +L    W  K         HERS + L  +++ A+ K N +PKA+ ITRHR+
Subject   3272  II*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRE  3670

Range 4: 3504 to 3650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 30/49(61%) 0/49(0%) Minus/Minus
Query      235  HAFQVLMQWL*SCSH*EGHKVENDLTSNTKFHIEATHFPQISSSPHILV  381
                HAFQVL QWL*SC+H  G  V +DL    +FHI ATH P+IS+  HILV
Subject   3504  HAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV  3650

Range 5: 3270 to 3482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 29/71(41%) 0/71(0%) Minus/Minus
Query        1  GA*RRIRQSFHFLHKHFHQVASVWLGPKELNQLVIRFPRTILFLPSKPNRRC*EESQLSAKSSYHHQAQEK  213
                GA  RI +S H  HKH   +    LG K+L+      PR I + P     +C* ++Q +AKS+ HHQAQ K
Subject   3270  GAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRK  3482

Range 6: 3346 to 3651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 49/102(48%) 0/102(0%) Plus/Plus
Query       77  EGRNKIVRGKRITS*FSSFGPNHTEATW*KCLCRK*NDCLILR*APCETDHYNTRI*GELEIWGK*VASMWNFVFEVKSFSTLCPS*WLHDYSHCISTWKA*  382
                +GR  I RG+       SF P++      +CLCR+*+D +IL  AP +    +TRI*  LEI G+*VA MWN +  +KS  T+ P+ WLHD+SHC STWKA*
Subject   3346  KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*  3651

Range 7: 3504 to 3662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 31/53(58%) 0/53(0%) Plus/Plus
Query      235  HQNMR*AGNLGKMSGLYVEFCV*SQIIFNLVPLLMAA*LQPLHQHLEGVR*TC  393
                HQNM+  GN GK+SG YVEF   +QI  N  P  M A* QPL QHLEGV+  C
Subject   3504  HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC  3662

Range 8: 3270 to 3425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 21/52(40%) 0/52(0%) Plus/Plus
Query        1  LFLCLVMVTAFGTQLAFFSAPTVWL*RQE*DRSWKANHQLIQLFRAQPYGSN  156
                L LCLVM  AFG  L F+ A     *R   D SW+ +   +Q+F+ Q + +N
Subject   3270  LSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNN  3425

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 2

Range 1: 3460 to 3726 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 42/89(47%) 0/89(0%) Plus/Plus
Query      138  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL  404
                P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L
Subject   3460  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVL  3726

Range 2: 3340 to 3417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 17/26(65%) 0/26(0%) Plus/Plus
Query        3  FPVPGDGNCFWHSVGFLLSTDGLALK  80
                F V  DGNCFWHSVG L+  DG  LK
Subject   3340  FDVEADGNCFWHSVGPLIGVDGEYLK  3417

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 3463 to 3729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 41/89(46%) 0/89(0%) Plus/Plus
Query      138  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL  404
                P + KQL  N +AE E +A FC  + ++L ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L
Subject   3463  PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVL  3729

Range 2: 3343 to 3420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 16/26(62%) 0/26(0%) Plus/Plus
Query        3  FPVPGDGNCFWHSVGFLLSTDGLALK  80
                F V  DGNCFWHSVG L+  DG  +K
Subject   3343  FDVDADGNCFWHSVGPLIGVDGECIK  3420

Range 3: 3342 to 3419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 16/26(62%) 0/26(0%) Minus/Minus
Query        2  FKAKPSVLRRKPTECQKQLPSPGTGK  79
                F   PS   R PTECQKQLPS  T K
Subject   3342  FMHSPSTPIRGPTECQKQLPSASTSK  3419

Range 4: 3570 to 3716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 20/49(41%) 0/49(0%) Minus/Minus
Query      245  TSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS  391
                TSTS    A+AMA++ QP  G QG K*   + K+     S   N Q+ S
Subject   3570  TSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS  3716

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 2

Range 1: 3459 to 3725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 41/89(46%) 0/89(0%) Plus/Plus
Query      138  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL  404
                P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AI+SAL RREVDVL  L
Subject   3459  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVL  3725

Range 2: 3339 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 17/26(65%) 0/26(0%) Plus/Plus
Query        3  FPVPGDGNCFWHSVGFLLSTDGLALK  80
                F V  DGNCFWHSVG L+  DG  LK
Subject   3339  FDVEADGNCFWHSVGPLIGVDGEYLK  3416

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 3326 to 3580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 35/85(41%) 0/85(0%) Plus/Plus
Query      150  KQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL  404
                +Q+  + +AE E +A FC  + ++L +++    V+W F   +      L  + NHF PC P+NGC++ AIASALGRRE+DVL  L
Subject   3326  RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVL  3580

Range 2: 3194 to 3283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 20/30(67%) 0/30(0%) Plus/Plus
Query        3  FPVPGDGNCFWHSVGFLLSTDGLALKAGIR  92
                F VPGDGNCFWHSVG L+  DG+ LK  +R
Subject   3194  FDVPGDGNCFWHSVGPLIGVDGILLKGILR  3283

Range 3: 3193 to 3270 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 16/26(62%) 0/26(0%) Minus/Minus
Query        2  FKAKPSVLRRKPTECQKQLPSPGTGK  79
                F   PS     PTECQKQ PSPGT K
Subject   3193  FNKIPSTPISGPTECQKQFPSPGTSK  3270

Range 4: 3466 to 3567 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/34(47%) 0/34(0%) Minus/Minus
Query      290  TSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKI  391
                TS S LP ADA+A+  QPL G  G K*  +  ++
Subject   3466  TSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV  3567

Nucleotide Sequence (546 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
55
110
165
220
275
330
385
440
495
546

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
399.7 1601.4 38% 1.062e-110 66% NC_001948
163.3 361.2 40% 5.235e-60 56% NC_008020
162.4 315.7 47% 6.136e-55 49% NC_001361
154.1 335.1 39% 1.738e-55 48% NC_010538
150.4 366.7 55% 6.747e-56 35% NC_031089

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 6248 to 6769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
399.7 bits(866) 0.0 164/174(94%) 0/174(0%) Minus/Plus
Query       24  KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVVD*ALSIWRCSSIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGR  545
                KVQFVSNPTFCGWCLFKEG FKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE +D*ALSIW   SIMNNLVKALSAFEF+GVFSVLKFPVVIHSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGR
Subject   6248  KVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGR  6769

Range 2: 6249 to 6761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.1 bits(546) 0.0 118/171(69%) 0/171(0%) Plus/Minus
Query       32  *D*DCLEHLQ*KPQNSRPLRLTPLLNYSYHYQAHYV*QLET*AH*KHL*TRRLIML*LNYS*YSNNAKYLRPNQPLQTGLKLNTSFYACS*PGTSHNCSVPPPPLLSSFQLIAHPIYMHRTPLSHNCQYSSPNCPSLWLCIFAPKLVEVS*RFPP*TSTIHRMWG*KQTEP  544
                *D* CLEHL *K  NS P +L PLLNY YHYQAHY * LE *AH*KHL T+ L ML*LNYS*YSNNAKYLRPNQ LQ GLKL+ S YACS*P   HN + PP    SSFQ +A P+ MHR PLSHNCQY+SP CPS   CI AP+L+E S*R  P* +TI RMW  KQTEP
Subject   6249  *D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRLIEAS*RSLP*INTIRRMWDWKQTEP  6761

Range 3: 6247 to 6642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.8 bits(480) 0.0 115/132(87%) 0/132(0%) Plus/Minus
Query      151  NLSTLKTPINSKADNALTKLFIILEQRQILKA*STTSNRPEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGLETN*TL  546
                NLSTLKTP NS ADNALTKLFIIL+  QILKA*S  SNRPEIEHLILCLFLT+NLTQL* ASTSSSVIIS+ SSP+ YA*+TSIA*LSIQFS+LPISLAMHIRSQI+*GFLK+PSLNKHHPQNVGLETN*TL
Subject   6247  NLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIPSLNKHHPQNVGLETN*TL  6642

Range 4: 6694 to 6774 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 22/27(81%) 0/27(0%) Plus/Minus
Query       19  LVLPVRLGLSGTPAVKATKLSSSEINS  99
                + LPVRLGLSGTPAVKA K SSSEI+S
Subject   6694  MYLPVRLGLSGTPAVKAMKFSSSEISS  6774

Range 5: 6472 to 6762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 71/97(73%) 0/97(0%) Minus/Plus
Query       31  LCEVPG*EQA*NEVFNFRPV*SG*LGLKYLALFEYYE*FS*SIISLRVYRCFQCAQVSSCYT*CAW*W*E*FNKGVNLRGREFCGFHCRCSRQS*SH  321
                LC + G EQA*+E+ NFRP+*S *LGLKYLALFEYYE*FS*SI+S+ V RCFQCA +SS ++*CAW*W*+*FNKG N RG EF  FH RCSRQ *SH
Subject   6472  LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SH  6762

Range 6: 6247 to 6420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 41/58(71%) 0/58(0%) Minus/Plus
Query      373  QGSVCF*PHILWMVLV*GGNLQETSTNLGANMHSQRDGQFGELY*QLCDRGVLCI*IG  546
                QGSVCF  HIL MV +*G +LQE S NLGA+MH   DGQ GELY*QLCDRG+LCI  G
Subject   6247  QGSVCFQSHILRMVFI*GRDLQEASINLGADMHC*GDGQPGELY*QLCDRGLLCIPTG  6420

Range 7: 6248 to 6769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 117/174(67%) 0/174(0%) Plus/Minus
Query       24  PPREIRTVWNTCSESHKTLVL*D*LPYXXXXXXXXXXMYNNWKLEHTENTYKLEG**CFN*IIHNTRTTPNT*GLINHFKQA*N*TPHFMLVPNQEPHTIXXXXXXXXXXXXN**LTQSICIGHLYRIIVNTVLQIAHLSGYAYSLPN*LRFLEGSLLKQAPSTECGVRNKLNL  545
                P  EIR VWNTC ES++ L+L +*LPY*TT TTTRHTM + WK +HTENTYKL+ * CFN*IIHNT+  PNT*GLIN FK A*N*  H MLVP+QE +TI++ LH    HHFN *L+QS+CIG LYRIIVNT+LQ+AHL   AY LP+*LR LE   LK  PS ECG+ NKLNL
Subject   6248  PSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD*LRLLEDPFLK*TPSAECGIGNKLNL  6769

Range 8: 6249 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 79/119(66%) 0/119(0%) Minus/Plus
Query      188  RFSLFLTPHSVDGACLRREPSRNLN*FGSEYA*PERWAIWRTVLTIMR*RCPMHIDWVSYQLK**QKRRWRHTTIV*GSWLGTSIK*GVQFQACLKWLIRP*VFGVVRVL*II*LKHYQ  544
                RFSLF  PHS DG  LR+  SR+LN* GS YA   RWA WR VLTIMR*R PMH DW S  LK** +++WR   IV  SW GTSI+*  QFQA LK LIRP*VFG++ VL*II*LKH Q
Subject   6249  RFSLFPIPHSADGVYLRKGSSRSLN*SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQ  6605

Range 9: 6654 to 6770 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 27/39(69%) 0/39(0%) Minus/Plus
Query       23  YIVCLXXXXXXX*GS*SQRTRVLWLSLQVFQTVLISRGG  139
                +IVCLVVV+VV**GS*  R R+  LS QVFQT LIS+ G
Subject   6654  FIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEG  6770

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 4

Range 1: 5790 to 6092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
163.3 bits(350) 0.0 65/101(64%) 0/101(0%) Minus/Plus
Query      243  KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVVD*A  545
                KV F S+PTFCGW L K G +KKPQL+ ER+CIA+E  NL NCIDNYAIEVSYAY+LGEL++  M EEE EA YNCVR +V+NKH ++ SIS LF+ + *+
Subject   5790  KVDFTSHPTFCGWNLTKYGIYKKPQLVLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*S  6092

Range 2: 6153 to 6344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 38/64(59%) 0/64(0%) Minus/Plus
Query       24  MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGR  215
                M+ LV     F F  V SVL+ PV+ H VPG+GKS+LIRELI+ D  F+AFTAG PD PNL+GR
Subject   6153  MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGR  6344

Range 3: 5810 to 6073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 49/88(56%) 0/88(0%) Plus/Minus
Query      262  NRPEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVG  525
                N+ EIE    CLF T  LTQL  AS SSS I    +SP+LYA*+TS+A*LSIQ  KL +S A+H RS  S GFL +P   K  PQ VG
Subject   5810  NKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAIHRRSSTSCGFL*MPYFVKFQPQKVG  6073

Range 4: 6269 to 6340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/24(62%) 0/24(0%) Plus/Minus
Query       28  PVRLGLSGTPAVKATKLSSSEINS  99
                P+R G SG+PAVKA K  S  INS
Subject   6269  PLRFGGSGSPAVKAMKR*SRLINS  6340

Potato virus M, complete genome

Sequence ID: Length: 8533 Number of Matches: 3

Range 1: 5687 to 5977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 62/97(64%) 0/97(0%) Minus/Plus
Query      252  VQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVV  542
                VQFV+ PTFCGW L  +G +KKPQL+ ER+CIA+EM NL NCIDNYAIEV+YAY+LGE ++  M EEEV A YNCVR +VRNKH +R  +  +FEV+
Subject   5687  VQFVNKPTFCGWHLCPDGIYKKPQLVLERMCIAKEMNNLSNCIDNYAIEVAYAYKLGEKAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDVKQVFEVL  5977

Range 2: 6019 to 6207 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 31/63(49%) 0/63(0%) Minus/Plus
Query       27  MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTG  215
                M+ +V  L  ++F  + + L  P+V+H VPG+GKSSLIREL+  D  F A+TAGV D P L+G
Subject   6019  MDVIVDLLYKYKFERLSNKLVCPIVVHCVPGAGKSSLIRELLELDSRFCAYTAGVEDQPRLSG  6207

Range 3: 5686 to 5976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 53/97(55%) 0/97(0%) Plus/Minus
Query      253  TTSNRPEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGLETN*T  543
                +TSN       + CLF T  LTQL* A+TSSS I+    SPNLYA  TS+A*LS+Q  +L IS AMHI S  S GFL +PS ++  PQ VGL TN T
Subject   5686  STSNTCFTSERMRCLFRTMILTQL*NAATSSSSILFTAFSPNLYAYATSMA*LSMQLLRLFISFAMHILSSTSCGFLYIPSGHRCQPQKVGLFTNCT  5976

Hop mosaic virus, complete genome

Sequence ID: Length: 8550 Number of Matches: 4

Range 1: 5654 to 5941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 57/96(59%) 0/96(0%) Minus/Plus
Query      258  KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  545
                KVQ    PTFCGW L  +G +KKPQL+ ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++  M+EEEV A YNCVR ++RNKH ++  + G++E
Subject   5654  KVQMTGTPTFCGWHLTPDGIYKKPQLVLERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE  5941

Range 2: 6022 to 6210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 34/63(54%) 0/63(0%) Minus/Plus
Query       27  MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTG  215
                M+ +V  L  F F  + + L+ P+V+H VPG+GKS+LIRELI+ D  FVAFTAG+ D P+LTG
Subject   6022  MDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTG  6210

Range 3: 5653 to 5931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 45/93(48%) 0/93(0%) Plus/Minus
Query      268  PEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGLETN*TL  546
                P       CLFL    TQL* A TSSS++     SP   A  TSIA*LS+Q  +L  S+AMHI S  +*GFL +PS  + HPQ VG+    TL
Subject   5653  PRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILSSTN*GFLYMPSGVRCHPQKVGVPVIWTL  5931

Range 4: 6138 to 6212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 17/25(68%) 0/25(0%) Plus/Minus
Query       25  LPVRLGLSGTPAVKATKLSSSEINS  99
                LPVRLG S  PAVKAT L S+ I+S
Subject   6138  LPVRLGSSSIPAVKATNLGSALISS  6212

Ligustrum virus A isolate SK, complete genome

Sequence ID: Length: 8525 Number of Matches: 4

Range 1: 5675 to 5959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 56/95(59%) 0/95(0%) Minus/Plus
Query      261  KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLF  545
                KV F + PTFCGW L  +G +KKPQL+ ER+CIA+E  NL NCIDNYAIEVSYAYRLGE ++  M EEE  A YNCVR +++NKH ++  ++ L+
Subject   5675  KVAFTNKPTFCGWNLTPDGIYKKPQLVMERMCIAKETNNLANCIDNYAIEVSYAYRLGEKALNRMDEEEAAAMYNCVRIIIKNKHLLKSDVATLY  5959

Range 2: 6016 to 6207 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 36/64(56%) 0/64(0%) Minus/Plus
Query       24  MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGR  215
                M+ LVK L+ + FI +   ++ PVVIH VPG+GK+SLIRE+I  D  FVA+T G+PD PNL GR
Subject   6016  MDILVKYLNKYNFIRLSQSIRPPVVIHCVPGAGKTSLIREIIQADSRFVAYTCGIPDKPNLEGR  6207

Range 3: 5692 to 5928 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 48/79(61%) 0/79(0%) Plus/Minus
Query      292  CLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGL  528
                CLFL   LTQL  A+ SSS I     SPN YA*+TS+A*LSIQF++L +SLAMHI S  + GFL +PS  K HPQ VGL
Subject   5692  CLFLMIILTQLYIAAASSSSIRFNAFSPNRYA*ETSMA*LSIQFARLFVSLAMHILSITNCGFL*IPSGVKFHPQKVGL  5928

Range 4: 5730 to 5909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 21/60(35%) 0/60(0%) Plus/Minus
Query      311  TSHNCSVPPPPLLSSFQLIAHPIYMHRTPLSHNCQYSSPNCPSLWLCIFAPKLVEVS*RF  490
                +SHNC++   PL     ++ HP  M + P  HNC+Y+  +  S   C F+P    VS R+
Subject   5730  SSHNCTLQLLPLHPFDSMLFHPTDMRKRPQWHNCRYNLQDYSSP*QCTFSPSPTAVSCRY  5909

Nucleotide Sequence (1061 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
107
214
321
428
535
642
749
856
963
1061

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 3680 to 4705 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
788.7 bits(1715) 0.0 327/342(96%) 0/342(0%) Minus/Plus
Query       24  PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLPTPNTP  1049
                PSTNHIFEELCQGGGLNMMYLAE FEAFDICAKCDINGEIEVINP GKISALFDITNEHIRHVEKIGNGPQSIK+DELRKVKRSALD LSMNGSKITYFP+FERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGIST DIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDD CKVAKAG+SKKEGWDVVTFEVFLRKV+GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLL     P
Subject   3680  PSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGP  4705

Range 2: 3679 to 4704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
670.1 bits(1456) 0.0 306/342(89%) 0/342(0%) Plus/Minus
Query       25  GVFGVGRRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTTSHPSFFDLPALATLQPSSISRSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISAVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKFGK*VILDPFIERRSRADRLTFLNSSIFML*GPLPIFSTCLMCSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSSKMWLVLG  1050
                G F + RRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFT  LLSMLYLYV PSSSLSMSLCSAPKIARSFCESYVL HGSPASEMKASLR+ SKHRS+YPGGNN TSSKITQ PAF P TFLRKTSKVTTSHPSFFDLPALATLQ SSISRSFLIEFAKARLGETKVTN PSDLFMKLLYKKLFPAPNVPSTTV+SLG IS VDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSK GK*VILDPFIER+SRADRLTF NSS FML*GPLPIFSTCLMCSLV+SN AEILP GL+TSISPFISHLAQ+SKASK SAKYI+L PPP  SSSK+ LVLG
Subject   3679  GPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLG  4704

Range 3: 3671 to 4690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
522.0 bits(1133) 0.0 231/340(68%) 0/340(0%) Plus/Minus
Query       39  R*EEVMHIVEDCIISKGCSH*TFFEVTWQSRFKHWVHKTSAFYVVPICLSFKQSEYVTLLSSQNCSXXXXXXXXXXWITSK*NESITAYDK*TQIDISRGKQLNLIENHTMPSLQTRNFSKENFKGHYIPPFLL*FACFGNFAAIIHFKIIFD*ICQGSSRGNKSNKFSLRSLHETLIQETLSSPKCAKHDS*LSWLYIRS*YTRKPGFCITELFITYNTS*AP*QAPLQLFSPLKVWKIGYFGPIH*KKIKGGSLNLPQLIYFYALRAIADLLNMPYVLIGYIKQGGNLTIWVNDLNFPIYITLSANIKGLKSLSQVHHIKPSPLAQLLKNVVGARPTR  1058
                R E+VMHI+EDCIIS+  SH   FEVTWQS F+HWVHK  AFYV+PI  + KQS+YVTLLS+QNC ILL +ICAL WITSK*NESIT Y+K   ID+SR KQL+LI+NHT+ SLQ+ NFSKEN K +YIPPFLL*  CF NFAAIIHFKIIFD*IC  +S  NK  +F+LR  HETL+QETL SPKC KHDS   WL I S YTRKP FCITEL ITYN S*AP*Q  LQLFSPLK W++GYF PIH*K+I+GGSL+LPQ I+FYALRAI   LNMPYVLI Y+KQ  N T  +N  N  IYIT SAN+KGLKS S +HH+K   L +LLKN++ A  T+
Subject   3671  RQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQ  4690

Range 4: 3685 to 4704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
480.8 bits(1043) 0.0 226/340(66%) 0/340(0%) Minus/Plus
Query       25  HQPHF*GAVPGGRA*YDVLG*DF*GL*YLR*V*YKWGN*GH*PKW*DFRLV*YNQ*AHKAC*EDRQWPSEHKNR*VEEG*AIRP*SSFNEWVQNNLFSKL*AG*KVARVLARGPNWCYK**KVQ*CKTLAFWYINCGYKAKRANCRAWHIWGWKEFLV*EFHEEI*GKICYFCFP*TSLGKFNQK*S*NG*WLQSCQSRQIKEGRVGCSDL*SFP*KSFWFEGWALCDFR*GSVVSPWIYRSVFTCHTQ*CFHFTCW*SMPEHI*FTEGSSNFGS*AE*HTQTA*RKDI*VQHRKQTFCEPNV*I*TAMSLQKRFNDCSLC*LCNLPQYA*LPPTDPKHT  1044
                H  +F*GA+ G   *+DV  * F*GL*+LR*+*YKW +*  *  W*+F +V*+N *AHKAC*E+R WPSEHK+ *+ EG AIRP   FNEWV NNL  KL*AG*KVAR+ ARGPNW YK**+VQ*CKTLAFWYI   Y AK  +CRAW+IWGW+EFLV EFHE++*G I   CF  T   KFNQK*S*NG* LQSC SR +KEGRVGCS+ * FP*KS   EGW LCDF *G VVS WI+RS+   +T *CFHFTCW*SM +HI*  +GS NFG *AE*HT TA* +++*V HRKQ  CEPNV I TAMSLQK  +DC   *LCNLP YA*L P + K +
Subject   3685  H*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRS  4704

Range 5: 3696 to 4706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
447.4 bits(970) 0.0 228/337(68%) 0/337(0%) Minus/Plus
Query       23  FLRSCARGEGLI*CTWLRLLRPLIFALSVI*MGKLRSLTQMVRFPPCLI*PMST*GMLRRSAMALRA*K*MS*GRLSDPPLIFFQ*MGPK*PIFQTLSGLKSCKGAC*GA*LVL*VMKSSVMQNPGFLVYQLRI*SQES*LSCLAHLGLERVSCIRVS*RDLRENLLLLFPLDEPWQIQSKMILKWMMAAKLPKQANQRRKGGM**PLKFSLEKFLV*RLGIV*FSMRFSCFPLDISICVYLSYAVMLSFHLLVIHARAHMIHRRIEQFWELSRVTYSDCLKERHIGTT*KADVL*TQCLNLDCHVTSKKVQ*LQPLLIMQSSTICMTSSYRPQTHP  1033
                FLRS  R   L *C  L+LLRPL FAL+VI*M +L+ L ++V+F  CL * MST*GMLR+  MALRA*K M+ GR SDPP I FQ*MG K*P  Q LSGLKSCK  C*GA*L L*VM+SSVMQN GFLVY L I SQ +*LSCL HLGL RVSC RVS*+ LR N   LF  D   QIQSKMILKWM+AAKL KQ  QRRKGGM** L+FSLEK   *RL  V*F MR SCF LD SI   L Y VMLSFHLLVIH +AHM  +RI QFW LSRVTY DCL+ + IG T*KA  L*TQC N DCHVTSK+ +*L   LIMQSS ICMT S+R Q  P
Subject   3696  FLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVP  4706

Range 6: 4065 to 4697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
298.4 bits(645) 0.0 142/211(67%) 0/211(0%) Plus/Minus
Query       32  LGSVGGSHAYCGRLHNQQRLQSLNLF*SDMAV*IQTLGSQNVCFLCCTYMSFLQAV*VCHSAQLPKLLDPSVNHMCSGMDHQQVK*KHHCV*QVNTDRYIQGETTEPHRKSHNAQPSNQKLF*GKLQRSLHPTLPSLICLLWQLCSHHPFQDHF*LNLPRLV*GKQK*QIFPQISS*NSYTRNSFQPQMCQARQLALLALYPQLIYQKARV  664
                L S G SHAY GRLHNQ++ QS + F*SDMAV I+TLGSQ  CFLC TY    QAV*VCHSAQ PKL DP  +HMC  MDHQQVK*KHH V*  + DR IQ ETT PH+KSH+ QPS  +LF*GK Q+ LHPTLPSL  LL QLCS+HPFQDHF*LNL + V  KQ+ +I+PQ  S*NS TRNS QPQM QARQ   LA Y   IYQKA+V
Subject   4065  LTSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKV  4697

Range 7: 3684 to 4025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.2 bits(328) 0.0 74/114(65%) 0/114(0%) Plus/Minus
Query      704  GPLASTLATFQPAQSLENRLFWTHSLKEDQGRIA*PSSTHLFLCSEGHCRSSQHALCAHWLYQTRRKSYHLG**PQFPHLYHT*RKYQRPQKSQPSTSY*ALPPGTAPQKCGWC  1045
                GPLA+ LATFQPAQSL +RLF THSLK ++GRIA*PS+ H  LCSEGH   SQHALCAH L QT +K YH  *  Q  HLYH *RK QRPQK Q +TS *   P  APQK   C
Subject   3684  GPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*C  4025

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 6

Range 1: 3736 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 74/189(39%) 0/189(0%) Minus/Plus
Query      483  PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL  1049
                P+   +F+E+ +G G ++  L+  FE F IC   D  GE+ ++N  G+I A F +  EH+ H+  +     S  + +L +V  SA+  L+MNG++I Y P+ +RA  L   L  G TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI NDL
Subject   3736  PAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 2: 4363 to 4737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 60/125(48%) 0/125(0%) Minus/Plus
Query       48  VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  422
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R+L G+TY++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEF  4737

Range 3: 4146 to 4301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/52(38%) 0/52(0%) Plus/Minus
Query      484  RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA  639
                +S L++ A+  LGETKV  FP D  M  L ++L P P VP    + L + ++
Subject   4146  KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFLSWTAS  4301

Range 4: 3756 to 3911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 23/52(44%) 0/52(0%) Plus/Minus
Query      874  CSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSS  1029
                CS    N A ILP  L    SP +S L QI K SK   +  IL P P  +SS
Subject   3756  CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSS  3911

Range 5: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      319  RSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTT  423
                +SIYPGG +* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Range 6: 3987 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 17/35(49%) 0/35(0%) Plus/Minus
Query      694  TPVRPPSKHPCNFSARSKFGK*VILDPFIERRSRA  798
                TPV P SK      ARS  G * I  PFI R   A
Subject   3987  TPVAPSSKLSSKVEARSMDGL*SISAPFIARNLMA  4091

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 6

Range 1: 3732 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 72/189(38%) 0/189(0%) Minus/Plus
Query      483  PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL  1049
                P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N NG+I A F +  EH+ H+  +     S  + +L +V  SA+  L++NG+++ Y P+ +RA  L      G TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI +DL
Subject   3732  PAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 2: 4359 to 4733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 58/125(46%) 0/125(0%) Minus/Plus
Query       48  VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  422
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G++Y++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF  4733

Range 3: 4142 to 4297 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 24/52(46%) 0/52(0%) Plus/Minus
Query      484  RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA  639
                +S L++ A   LGETKV  FP D  M  L K+LFP PNVP   +S L + ++
Subject   4142  KS*LMDSASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFLSWTNS  4297

Range 4: 3749 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 23/53(43%) 0/53(0%) Plus/Minus
Query      874  CSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSSK  1032
                CS    N A ILPF L    SP +S L QI K S    +  +L P P  +SSK
Subject   3749  CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSK  3907

Range 5: 3992 to 4087 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 14/32(44%) 0/32(0%) Plus/Minus
Query      694  TPVRPPSKHPCNFSARSKFGK*VILDPFIERR  789
                TPV P SK      ARS  G *    P I R+
Subject   3992  TPVAPISKLSSRVEARSMEGL*STSAPLIARK  4087

Range 6: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 14/35(40%) 0/35(0%) Plus/Minus
Query      319  RSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTT  423
                +SI PGG +* SS  T  P+          SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 6

Range 1: 3733 to 4299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 72/189(38%) 0/189(0%) Minus/Plus
Query      483  PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL  1049
                P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N NG+I A F +  EH+ H+  +     S  + +L +V  SA+  L++NG++I Y P+ +RA  L      G TGV+        K   + +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI +DL
Subject   3733  PAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4299

Range 2: 4360 to 4734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 59/125(47%) 0/125(0%) Minus/Plus
Query       48  VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  422
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L +     I +AGDPCQS YDS  DR I    +SDI+R L G++Y++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4360  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF  4734

Range 3: 4359 to 4703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 46/115(40%) 0/115(0%) Plus/Minus
Query       79  SAKAAVIEPFLK*HGSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTT  423
                S+ + V     K  GSL   IGF    L ML L + P   L MSL    KI RS   S  LWHGSPA  M       S  RS+ PGGN+* SS  T  P+          S V T
Subject   4359  SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPAIIMFTFRFNPSMIRSM*PGGNS*ISSMTTV*PSLMLSRCKMNNSNVLT  4703

Range 4: 4164 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 20/45(44%) 0/45(0%) Plus/Minus
Query      484  RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVS  618
                +S  I+ A   LG+TKV  FP D  M  L ++LFP PNVP   ++
Subject   4164  KS*FIDSASDLLGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN  4298

Range 5: 3750 to 3917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 24/56(43%) 0/56(0%) Plus/Minus
Query      865  CLMCSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSSK  1032
                C  CS    N A ILPF L    SP +S L QI   S    +  IL P P  +SSK
Subject   3750  CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSK  3917

Range 6: 3960 to 4088 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 18/43(42%) 0/43(0%) Plus/Minus
Query      694  TPVRPPSKHPCNFSARSKFGK*VILDPFIERRSRADRLTFLNS  822
                TPV P SK      ARS  G * I  P I +   A   T L S
Subject   3960  TPVAPNSKLSSKVDARSIEGL*SISAPLIAKNLIALFETLLRS  4088

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 7

Range 1: 4208 to 4588 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 64/127(50%) 0/127(0%) Minus/Plus
Query       42  VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLL  422
                V+TFE+FL  ++ +K GH VI DE+QLFPPGY+DL L+   SD  + LAGDPCQS YDS+ DR +     SDI+ +L GK+YRYNI S+RF NP+F SRLPC      +T    +Y ++ ++  F L
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTLWDSITQFEL  4588

Range 2: 3587 to 4030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 49/148(33%) 0/148(0%) Minus/Plus
Query      606  PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVV  1049
                P    ++E+ C G G  +  L   FE F I A+ D  G +  +N +GKISA F +  EH+ H++++     S  I +L  V +SAL LL +NGS+I+Y P+ +RA+ L   L  G TGV+  E ++  +  + G+     + +  T++
Subject   3587  PEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII  4030

Range 3: 4030 to 4116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 14/29(48%) 0/29(0%) Minus/Plus
Query      517  WHIWGWKEFLV*EFHEEI*GKICYFCFP*  603
                W++W W E  +*E H +I  K   FCFP*
Subject   4030  WYLWMW*EHSI*EVHIKITRKSYNFCFP*  4116

Range 4: 4207 to 4509 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 38/101(38%) 0/101(0%) Plus/Minus
Query      121  GSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTT  423
                G+ +   GF    LS+LY  + P     MS     K  RS   S  LW GSPA     S  + ++ RS  PGG +* SS IT CP       +R +SKV+T
Subject   4207  GNREEKTGFLNL*LSILYR*LLPFKMWMMSESELAKR*RSSLLS*SLWQGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST  4509

Range 5: 4030 to 4146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 20/39(51%) 0/39(0%) Plus/Minus
Query      487  SFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVP  603
                S LI  A+  LGETKV  FP D  M  L + L P P VP
Subject   4030  SHLISSARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP  4146

Range 6: 3814 to 4023 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 24/70(34%) 0/70(0%) Plus/Minus
Query      613  VSSLGFISAVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKFGK*VILDPFIERRSRADRLTFLNS  822
                V SL        P       L  S+ ITPV P  +   +  A S  G+* I DP I R   A  LT   S
Subject   3814  VHSLRSAMFASSPSIMCLLEL*VSAHITPVVPAWRLLASV*ALSMEGE*EISDPLIIRSFSALLLTVWRS  4023

Range 7: 3995 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/68(49%) 0/68(0%) Minus/Plus
Query      435  ADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKK  638
                A+I  R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K    GK  K
Subject   3995  ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Nucleotide Sequence (449 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
45
90
135
180
225
270
315
360
405
449

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
319.1 1369.0 25% 1.536e-86 62% NC_001948
105.1 141.4 28% 3.511e-27 44% NC_018714
90.0 209.1 22% 1.103e-25 37% NC_009892
103.2 211.8 25% 1.23e-26 40% NC_014821
102.3 138.7 27% 2.302e-26 46% NC_003462

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 3275 to 3694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
319.1 bits(690) 0.0 128/140(91%) 0/140(0%) Minus/Plus
Query       22  SVPGHGNCFWHSDGFLLSTDGFALKAGIRPFVESERLISSDLSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPSTKH  441
                SVPG GNCFWHS GFLLSTDG ALKAGIR FVESERL+S DLSAP ISKQLEENAYAENEMIALFCIRHHVR IV+TPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGR EVDVLNYLCRPST H
Subject   3275  SVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNH  3694

Range 2: 3469 to 3690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.9 bits(347) 0.0 67/74(91%) 0/74(0%) Plus/Minus
Query       26  LVLGLHR*FNTSTSGLPSAEAMAVIMQPFSGAHGWK*LDFRQRIPHRGHSLSPNFQLTSYSGVTTISLTWCRIQ  247
                LVLGLHR*FNTSTS LPSAEAMAVIMQPFSGAHGWK* D RQRIPHRGHS SPNFQLTSYSGV TI LTWCR+Q
Subject   3469  LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQ  3690

Range 3: 3273 to 3485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 44/71(62%) 0/71(0%) Plus/Minus
Query      231  RGAGYKIMQSSHSQHKHSLPIV*KWLELKDLN**GAHSPQKVECLPSERNHQY*AGNHLNAKSNCHDQVRR  443
                RGA  +IM+SSHS+HKHSLPIV*K L LKDL+   AHSP+K+E  P  + HQ *  N  NAKSNCH Q +R
Subject   3273  RGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQR  3485

Range 4: 3271 to 3687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 96/139(69%) 0/139(0%) Minus/Plus
Query       29  YLRTWSWQLLLAFRWFPAQY*WFRSEGRHSTFCGE*APY*FRSFSSNHF*TIGRECLC*E*DDCIILYPAPRKADSSNTRI*S*LEIWGK*VAPMWNSLPEVQSLPTMCPTEWLHDHGHCLSAWEA*S*CVKLSM*A*H  445
                +L  W WQLLLAF WF   +*W   +GR+S F GE*A    RSFS ++F*TIGRECLC E*DD IIL+ APRKA S +TRI*S*LEI G+*VAPMWNSLP ++SLPTM PTEWLHDH HC S W+A*S*CVKLS+*  H
Subject   3271  FLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH  3687

Range 5: 3278 to 3694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 95/139(68%) 0/139(0%) Plus/Minus
Query       22  VFGARPT*II*HINFRPPKR*GNGRDHATIQWGTWLEVIGLQAKNST*GPLTFPKFPTNFIFWCYYYQPYVVPDTK*CNHXXXXXXXXFQLFRNGWS*KI*TNKALTLHKRSNACLQSETISTEQETI*MPKAIAMTRY  438
                +  A  T II*HINF P K * NG DHATIQWG WLEVI  +AKNST*GPLTFP+FPTNFIFWC +Y+PYVVP+ +*C+HLIL ISILFQLFRN W *KI T +ALTLH+RSN  L  ++IS + +T  MPKAIA+TR+
Subject   3278  MISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRH  3694

Range 6: 3267 to 3677 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 101/137(74%) 0/137(0%) Minus/Plus
Query       39  TLSPYLVMAIAFGIQMVSCSVLMVSL*RQAFDLLWRVSALLVQIFQLQPFLNNWKXXXXXXXXXLHYFVSGTT*G****HQNMKLVGNLGKVSGPYVEFFA*SPITSNHVPH*MVA*SRPLPQRLGGLKLMC*IIYV  449
                TLS  LVMAIAFGI +V    LM   *R  FDL WRVSA  VQIFQ Q FLNNWKRMLM RMR* HY   GTT*G ** HQNMKLVGN GKVSGPYVEFFA + ITSNH PH*MVA*S+PL Q L G+KLMC*II V
Subject   3267  TLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICV  3677

Range 7: 3522 to 3686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 41/55(75%) 0/55(0%) Plus/Minus
Query       30  C*AYIDNLTHQLQASQALRQWP*SCNHSVGHMVGSDWTSGKEFHIGATHFPQISN  194
                C  Y DNLTHQL A Q L+QW *SCNHSVG MVGSD   GKEFHIGATH P+ISN
Subject   3522  CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN  3686

Range 8: 3274 to 3423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 39/50(78%) 0/50(0%) Plus/Minus
Query      293  CLEMVGAERSELIRRSLSTKGRMPAFRAKPSVLSRKPSECQKQLP*PGTE  442
                CLE+ GAERS L +RSLSTK R+PAFRA PSVLS+KP+ECQKQLP PGTE
Subject   3274  CLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTE  3423

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 2

Range 1: 3430 to 3738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 45/103(44%) 0/103(0%) Minus/Plus
Query       31  ERLISSDLSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPS  339
                ++ +   +  P +SKQLE N +AE E +A FC  + +RL V+    E +W F   E      L  + NHF+PC P+NGC+I AIASAL R EVDVL  L +P+
Subject   3430  DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPA  3738

Range 2: 3346 to 3417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 14/24(58%) 0/24(0%) Minus/Plus
Query      367  VPGHGNCFWHSDGFLLSTDGFALK  438
                V   GNCFWHS G L+  DG  LK
Subject   3346  VEADGNCFWHSVGPLIGVDGEYLK  3417

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 3284 to 3589 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 38/102(37%) 0/102(0%) Minus/Plus
Query       34  ERLISSDLSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRP  339
                ER   + ++   + +Q+  + +AE E +A FC  + ++L V++    V+W F  ++      L  + NHF PC P+NGC++ AIASALGR E+DVL  L +P
Subject   3284  ERCGRNGITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKP  3589

Range 2: 3191 to 3283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 17/31(55%) 0/31(0%) Minus/Plus
Query      355  LISVPGHGNCFWHSDGFLLSTDGFALKAGIR  447
                +  VPG GNCFWHS G L+  DG  LK  +R
Subject   3191  VFDVPGDGNCFWHSVGPLIGVDGILLKGILR  3283

Range 3: 3466 to 3597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 20/44(45%) 0/44(0%) Plus/Minus
Query       26  LVLGLHR*FNTSTSGLPSAEAMAVIMQPFSGAHGWK*LDFRQRI  157
                L  GL +   TS S LP A+A+A+  QP +G HG K*L +  R+
Subject   3466  LCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV  3597

Range 4: 3199 to 3270 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 13/24(54%) 0/24(0%) Plus/Minus
Query      368  FRAKPSVLSRKPSECQKQLP*PGT  439
                F   PS     P+ECQKQ P PGT
Subject   3199  FNKIPSTPISGPTECQKQFPSPGT  3270

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 3454 to 3741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 44/96(46%) 0/96(0%) Minus/Plus
Query       31  LSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPS  318
                +  P +SKQLE N +AE E +A FC  + ++L V+    E +W F   E      L  + NHF+PC P+NGC+I AIASAL R EVDVL  L +P+
Subject   3454  VKCPRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPA  3741

Range 2: 3349 to 3420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 13/24(54%) 0/24(0%) Minus/Plus
Query      367  VPGHGNCFWHSDGFLLSTDGFALK  438
                V   GNCFWHS G L+  DG  +K
Subject   3349  VDADGNCFWHSVGPLIGVDGECIK  3420

Range 3: 3543 to 3737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 26/65(40%) 0/65(0%) Plus/Minus
Query       35  GLHR*FNTSTSGLPSAEAMAVIMQPFSGAHGWK*LDFRQRIPHRGHSLSPNFQLTSYSGVTTISL  229
                GL R   TSTS    AEAMA++ QPF+G  G K*L  + ++     S   N Q+ S    +T +L
Subject   3543  GLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHSSLA*STFNL  3737

Range 4: 3360 to 3419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 12/20(60%) 0/20(0%) Plus/Minus
Query      368  FRAKPSVLSRKPSECQKQLP  427
                F   PS   R P+ECQKQLP
Subject   3360  FMHSPSTPIRGPTECQKQLP  3419

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 2

Range 1: 3450 to 3737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 44/96(46%) 0/96(0%) Minus/Plus
Query       31  LSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPS  318
                +  P +SKQLE N +AE E +A FC  + +RL V+    E +W F   E      L  + NHF+PC P+NGC+I AI+SAL R EVDVL  L +P+
Subject   3450  VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPA  3737

Range 2: 3345 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 14/24(58%) 0/24(0%) Minus/Plus
Query      367  VPGHGNCFWHSDGFLLSTDGFALK  438
                V   GNCFWHS G L+  DG  LK
Subject   3345  VEADGNCFWHSVGPLIGVDGEYLK  3416

Nucleotide Sequence (543 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
55
110
165
220
275
330
385
440
495
543

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
270.0 1464.3 33% 5.068e-98 51% NC_001948
189.4 478.2 29% 5.505e-64 29% NC_009892
193.5 477.0 33% 1.419e-63 30% NC_003462
186.6 464.0 29% 1.614e-61 31% NC_014821
175.6 497.6 67% 6.485e-59 36% NC_031089

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 5189 to 5542 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.0 bits(583) 0.0 109/118(92%) 0/118(0%) Plus/Plus
Query      188  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  541
                WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASH
Subject   5189  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASH  5542

Range 2: 5003 to 5137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 42/45(93%) 0/45(0%) Plus/Plus
Query        2  VIRDLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  136
                VIRDLLPGEP+FF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQ
Subject   5003  VIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQ  5137

Range 3: 5188 to 5538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 88/117(75%) 0/117(0%) Minus/Minus
Query      187  LAFSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  537
                LAF+G  +RK S+KNFPYG ARL+ AAST GFEN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P  TSR SF AI PTHLALVDS+LL G+WVLNH
Subject   5188  LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH  5538

Range 4: 5002 to 5121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 33/40(82%) 0/40(0%) Minus/Minus
Query        1  MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLIT  120
                +TF+ GSPH+FSSLTPSF PMLTLKPLKKLGSPGSKS +T
Subject   5002  ITFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMT  5121

Range 5: 5006 to 5542 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 99/179(55%) 0/179(0%) Minus/Minus
Query        5  VAGIQWNL*KESVK*KLPIWLCAP*FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEAGLTWKQIPY  541
                + G QW+   E + *+ PIW   P F SF+L L KF+T  + HE+G+*II+FM W+ AFK  TCIAQLL SSTP+ IKELL  FITT+H  +  Q H ++PPGPG* Q+T  D+GFKPF I*AF L   NF ILIL +EKH+ *P +TT LLL + FI  NAN++  +E  LTW+QI Y
Subject   5006  MTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISY  5542

Range 6: 5013 to 5537 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.1 bits(426) 0.0 95/175(54%) 0/175(0%) Minus/Minus
Query       12  WHSVEPLKGKCQVKTSHMALRALILQLRLEALKISDVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVHQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQVPQLRNPHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHLEAN  536
                W S+    GK  ++ SHM   A + QL+  A KI D   +P* R LNH+LY L  CFQ  HMHCS+A  FH   HQR V SFHNH +     S P + PTWPWL P Y  G GF*TI HLSI T   QL NPHL  GKA* L   HH  SP   LHS QC* *+H*RS AHL AN
Subject   5013  WLSMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AHLGAN  5537

Range 7: 5013 to 5537 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.0 bits(417) 0.0 98/175(56%) 0/175(0%) Plus/Plus
Query       12  ICFQVSPASLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRNLSLNAQMRNGLKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLMNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNV*NFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MP  536
                IC QVS  S +   LAL  MK   RRS VV  G*+ CFS  KMRI KL+  S NAQM+NGLKP S *V W+QPGPGG  +W *++  +  VVMK  N+SLM+ GVE  SN*AMHV+ LKA+ Q IK MIQ*P SW   +V NF+S + KL N*G  +HMG+ Y  LS+ + H* P
Subject   5013  ICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KP  5537

Range 8: 5002 to 5538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 91/179(51%) 0/179(0%) Plus/Plus
Query        1  CNKGFASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGHAFPWPR*GLRS*GT*V*MLK*GMV*NPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL**TQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETSEIFKASSRSCKIKARKAIWEVFT*HFPFKGSTECQ  537
                C+  FA R*A LL W   *HW E*R   GE +W* + K +AFP  R*GL S*   V MLK* MV*NP+P++* G+NQGQVG  +G+E      +WL*ND T+L**   W   A EQCM*++*KH+ K *R *F++L HG  + S+IF+A   SC+ +A + IWE+    FP +   E Q
Subject   5002  CHTRFAPR*A*LLQWL*R*HWKE*RC*GGEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQ  5538

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 5

Range 1: 5087 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 75/118(64%) 0/118(0%) Plus/Plus
Query      188  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  541
                WFKTHIP+  LE+ RARWV K+  KE RE R G+E T+QF DEH     +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +PL   H
Subject   5087  WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKH  5440

Range 2: 4910 to 5035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 29/42(69%) 0/42(0%) Plus/Plus
Query       11  DLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  136
                DLLPG+P F  GF V+IGR+E VRE KL GDPWLK  +FLGQ
Subject   4910  DLLPGKPEFIEGFQVNIGRDEEVREPKLSGDPWLKTAIFLGQ  5035

Range 3: 5236 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 34/63(54%) 0/63(0%) Minus/Minus
Query      337  GTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNC  525
                G + RKV  +N P G A LN A S  G+E    FLTA+R VTES+PLCLG ++S LS AL+ C
Subject   5236  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVIC  5424

Range 4: 5089 to 5220 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 25/44(57%) 0/44(0%) Minus/Minus
Query      190  LCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  321
                LCSS NC V S*P L S  SF +I  THLAL  S+   G+ VLN
Subject   5089  LCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN  5220

Range 5: 4904 to 5383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 47/160(29%) 0/160(0%) Minus/Minus
Query        5  WLCAP*FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEAGLTWKQIPY  484
                W  +P*F +F+  L + + F N H +   +   M  I +F  F+C+  L A    +F+ +LL   +T    + FL ++  +PP P   +   W++ F+P  +  F   FL   + +L ++     P ITT   L++ FIP N ++ET+ +  L+ K+I Y
Subject   4904  WHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT*FRLAYLFIPANIHLETLNKFRLSGKEINY  5383

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 6

Range 1: 5238 to 5591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 76/118(64%) 0/118(0%) Plus/Plus
Query      188  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  541
                WFKTHIP+ +LE+ RA+WV K+  +E RE R G  TT+QF D+H   R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VPLN+SH
Subject   5238  WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSH  5591

Range 2: 5055 to 5186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 27/44(61%) 0/44(0%) Plus/Plus
Query        5  IRDLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  136
                I DLLPG P    GF   +G +EGVRE KL GDPWLK  +FLGQ
Subject   5055  IIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ  5186

Range 3: 5390 to 5587 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 36/66(55%) 0/66(0%) Minus/Minus
Query      340  LAFSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN  537
                L F GT  RKVSS+N P G A  +FA S  G E    FLTA+R V  S+PLCLGY+ S  S AL+N
Subject   5390  LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN  5587

Range 4: 5051 to 5170 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 17/40(42%) 0/40(0%) Minus/Minus
Query        1  MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLIT  120
                + F+ GSP S +SLTPS  P     P    G PGS+S+++
Subject   5051  LVFNHGSPTSLASLTPSSAPTWLWNPSMSSGRPGSRSIMS  5170

Range 5: 5240 to 5365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 19/42(45%) 0/42(0%) Minus/Minus
Query      190  SSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  315
                SS NC VV  P   S  S      TH AL  S+L+ G+ VLN
Subject   5240  SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN  5365

Range 6: 5085 to 5516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 43/144(30%) 0/144(0%) Minus/Minus
Query       35  FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKE  466
                FC    R  + Q+  N H+K   I   M  +Y+F + + I+ LL +   V I ELL   +T +   +  +    NP      +   WD+  +P L     ++  NF + IL KE   L*P IT     S  FI  N  +E+  E
Subject   5085  FCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPILGRLNLIRDFNFKVRILPKEDLGL*PWITH*FSFSDTFISTNLALESFNE  5516

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 5

Range 1: 5242 to 5595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.6 bits(401) 0.0 73/118(62%) 0/118(0%) Plus/Plus
Query      188  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  541
                WFKTH+P+  LE+ RA+WV ++  KE RE R G  TT+QF DEH   R  +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VPL+  H
Subject   5242  WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKH  5595

Range 2: 5059 to 5190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 27/44(61%) 0/44(0%) Plus/Plus
Query        5  IRDLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  136
                I DLLPG P    GF   +G +EGVRE KL GDPWLK  +FLGQ
Subject   5059  IIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ  5190

Range 3: 5244 to 5597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 57/118(48%) 0/118(0%) Minus/Minus
Query      190  LWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  543
                L L   GT  +KVS +NFP G A LN A S  G E    F TA++ V  S+PLCLG M S LS AL++ S L  LCSS NC VV  P   SR S  +   TH AL  S  + G  VLN
Subject   5244  LCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN  5597

Range 4: 5055 to 5174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 17/40(42%) 0/40(0%) Minus/Minus
Query        1  MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLIT  120
                + F+QGSP S +S TPS  P    KP    G PG++S+++
Subject   5055  LVFNQGSPTSLASRTPSSAPTWL*KPSISSGRPGNRSIMS  5174

Range 5: 5089 to 5451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 37/121(31%) 0/121(0%) Minus/Minus
Query       35  IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKE  397
                I + MSW+  F  F+C+ +       VFI EL    +  S F++ L    ++P  P   +   W M  +P L      K + F +  LAKE   L*P I+    LS+  I PN  ++T  +
Subject   5089  ISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGISN*FSLSNALICPNLALKTFNQ  5451

Ligustrum virus A isolate SK, complete genome

Sequence ID: Length: 8525 Number of Matches: 6

Range 1: 4616 to 4969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.6 bits(377) 0.0 71/118(60%) 0/118(0%) Plus/Plus
Query      188  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH  541
                WFKTH+P ++LE  RA WV K+  KE REVR GY  + QF DEH     +QL+NA ERFE+IYPRH+ ND+VTF+MAV+KRL+FS P  E  KL +AK YGKFLLD FL K+PL   H
Subject   4616  WFKTHLPQADLEGVRATWVHKIMAKEMREVRLGYLVSDQFTDEHSKQLGKQLTNAAERFETIYPRHRANDTVTFIMAVKKRLRFSNPAKEMGKLGQAKLYGKFLLDEFLKKIPLKRQH  4969

Range 2: 4445 to 4564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 25/40(62%) 0/40(0%) Plus/Plus
Query       17  LPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  136
                LPGEP F + +++++G++EGV+EEKL GDPWLK M+FLGQ
Subject   4445  LPGEPKFTHSYDLNVGKDEGVKEEKLAGDPWLKGMIFLGQ  4564

Range 3: 4615 to 4959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 52/115(45%) 0/115(0%) Minus/Minus
Query      187  FSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  531
                F+G F +  SSKNFP   A  +F  S  GFEN   F TA+  VT SL  CLG ++SNLS A ++C      CSS N      P+LTS  S   I  TH+AL  S+   G  VLNH
Subject   4615  FNGIFFKNSSSKNFP*SLAWPSFPISFAGFENLNLFFTAIMNVTVSLARCLG*IVSNLSAAFVSCLPSCFECSSVN*SDTKYPNLTSLISLAMILWTHVALTPSRSACGKCVLNH  4959

Range 4: 4438 to 4539 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/34(53%) 0/34(0%) Minus/Minus
Query       10  SQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKS  111
                S GSP SFSS TPS  P         LGSPG K+
Subject   4438  SHGSPASFSSFTPSSLPTFKSYECVNLGSPGKKA  4539

Range 5: 4610 to 4960 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 42/117(36%) 0/117(0%) Minus/Minus
Query      182  IQWNL*KESVK*KLPIWLCAP*FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFL  532
                +QWN   E +K*K  I L   *F  F  R+*+ Q F   H +   II+ + W+ + KS  CI QL A    +FI EL+   I  S  + FL     +P  P   ++  W + FKP L
Subject   4610  LQWNFL*EFIK*KFSIKLSLA*FPHFLCRI*ESQPFFYSHNECDSIISSVPWVNSLKSLGCICQLFAKLL*MFISELIRY*IPQSDLSHFLSHDFVDPRRPHTLEIRLW*VCFKPLL  4960

Range 6: 4731 to 4958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 29/76(38%) 0/76(0%) Plus/Plus
Query      303  SSLMNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNV*NFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*  530
                +SLMN     A+N* M  +DL+ + Q  ++MI     W     *+ Q L+ K  N*   S M +FYL  S ++FH*
Subject   4731  NSLMNIQSNLANN*QMQPRDLRLFTQGTELMILSHSLWL*KKG*DSQILQRKWGN*AKLSFMENFYLMNS*RKFH*  4958

Nucleotide Sequence (1158 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
116
232
348
464
580
696
812
928
1044
1158

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 17

Range 1: 6350 to 7312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
665.0 bits(1445) 0.0 269/321(84%) 0/321(0%) Minus/Plus
Query      194  REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWRVVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDRHRHW  1156
                REMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+W  + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIREL++EDE+FIAFTAGVPD+PNL+GRYIKPYSPGCAV G++NILDEYLSV D SGFDVLFSDPYQN+S+P+EAHFIKSKTCRFG NTCKYL SFGF + SD  D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID    HW
Subject   6350  REMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHW  7312

Range 2: 6685 to 7311 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
324.6 bits(702) 0.0 148/209(71%) 0/209(0%) Plus/Minus
Query      195  QCLCRSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLTF*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK  821
                QC  + SM   F PNSQ AEKA +CM+INF LCLVAAM*NQCLSS VGSLDF +VTT  V P TSQG+L SELCA A+STASLPK ISTPSTS+  G+P +T S  SL  LKPK+ RYL VF+PNLQVFD MK ASLG L F YGSEN+TSKPE S TD+YSSS+   P TA PGE GLMYLP RLG+SGTPAVKAMK SSS  SSLIK
Subject   6685  QCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK  7311

Range 3: 6352 to 6603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 66/84(79%) 0/84(0%) Plus/Minus
Query      903  DKALTKLFIIITTRQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPIS  1154
                D ALTKLFII+   Q LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS  A*+TSIA*LS+QFSRLPIS
Subject   6352  DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPIS  6603

Range 4: 6356 to 7312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
335.1 bits(725) 0.0 160/319(50%) 0/319(0%) Plus/Minus
Query      194  PMPMPIVNGVIVLAQFAGC*KGISLHDDQLLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIWVRK*HVKTRNVTYRQILIKYVYPPFYSTARGVWLDVPSREVGSVGNAGRKGYEALVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHNTPNT*GLIYSFKQPGN*APHLVLISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTH  1150
                PMP P VNGV+V AQFAGC*KGI LHD Q L +SC SNV+PV I+ G I *FQ   ++K  TS  TR FE  ++R+  I+CLL KA *H  NI  K R  N F++ VT  +KT+G K+   I AK    *L E+ L  N D+L+WVR+ H+KT  +   Q+LIKY+  P++ T   + L+VPS E+ +V N   + YE L+L +   Y*TTFTTTR+ MN+ WK +H  NT+KLK  Q FN*+IHN    PNT*GLI SFK   N*A HL+L+ + E +T+++  +F   HHFN  L+Q V IG L  I++N +LQV H
Subject   6356  PMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAH  7312

Range 5: 6708 to 7295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 98/196(50%) 0/196(0%) Minus/Plus
Query      211  RTRAS*PLRPAFPTLPTSLEGTSSHTPLAVL*KGG*TYLMSICL*VTFLVLTCYFLTHIKMSVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*FAXXXXXXXXXXXXXXISNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERS*SSCSEMPFQQPANWAKTITPLT  798
                R R S*  +  F T   S EGT S     V  +G   YLMS C    F VL C   TH K S F  R  S SQ+   LA I  + F P VL   VT   K L  R L  ML+ C*+AL RRQ I  LR    SN+LV+ EV  L    +*NQ I+P  I TG TLL QD  R+* SCS+MPFQQPANWAKTITPLT
Subject   6708  RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLT  7295

Range 6: 6355 to 6624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 48/90(53%) 0/90(0%) Minus/Plus
Query      882  NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFRVV*SYRLGLKCLACCDYYE*LS*SFVYV*VCGC  1151
                +G PGEL+* LC+ G+LC+  GR  +*ND+   S   L LC +   + A DE+LNFR +*SY LGLK LA  +YYE* S*S V +*VC C
Subject   6355  DGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRC  6624

Range 7: 7036 to 7311 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 50/92(54%) 0/92(0%) Minus/Plus
Query      195  C*GCANLLWQGGS*FSGCA*FRFQTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEVDHHAVKCLFSNLRIGPKLSPH*RSA*AL  470
                C*  AN+LW GGS    CA    Q +L*  R   *     EIK S+ R *ALVLHCC KT  E+D+HAV+CLFS+LRIG K   H*+ A AL
Subject   7036  C*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWAL  7311

Range 8: 6676 to 6981 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 44/102(43%) 0/102(0%) Minus/Plus
Query      525  *K*FNKRTCH*GRELHSLYGRRSRHSQPLWKVHQAILPWLCCKREDKHT**VSVCK*HFWF*RVIF*PISKCQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*  830
                *K*FNK     G E HS + R SR      KVH A+   +C  RE  +T**V V    F F*  +  PI K Q S  G+ H+VK+L +WR+Y+ +  +L F*
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF*  6981

Range 9: 6348 to 6572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 37/75(49%) 0/75(0%) Minus/Plus
Query      934  LVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEISTR*GAQFPGCLKL*IRP*VFGVL*  1158
                L +W TWR  L  M+ R PM T W S  LK** ++K +    V  S    S R* AQF   LKL IRP*VFG++*
Subject   6348  LGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*  6572

Range 10: 6357 to 6692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 61/112(54%) 0/112(0%) Plus/Minus
Query      814  LLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SQHAKHLRPNL*LQTTRKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYP  1149
                LLNYFYHYQ  YE  LEI*A  KH QTQ  T L*L+YS* S +AK+LRPN *LQ   KLS SS A  *    H+ +   L   SSFQ    P   HR P  H+ Q +SPG P
Subject   6357  LLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCP  6692

Range 11: 7155 to 7310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 33/52(63%) 0/52(0%) Plus/Minus
Query      196  NAYADRQWGDSFGPIRRLLKRHFTA**STSFYVLLQQCRTSAYHRRSDPLIS  351
                NA A+ QW   F PIRRLLKRH TA* S S  VL QQC+TSAY    D LIS
Subject   7155  NAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7310

Range 12: 6765 to 6980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 31/72(43%) 0/72(0%) Plus/Minus
Query      526  *NQRTEGTYMYFRQICRSLTL*SEPPLEH*HFDMGQKITRQNQKCHLQTDTHQVCLSSLLQHSQGSMA*CTF  741
                *N+R +    Y RQ  + LT *+ P  E * F MG +   QN K   +T THQV   SL  H+  + A*CTF
Subject   6765  *NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTF  6980

Range 13: 7154 to 7327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 34/58(59%) 0/58(0%) Plus/Plus
Query        1  LRSGDPTSDDMSWFYIGATGHR*VWIIMQ*IAFSAAGDLGQNYPPIVVGVGHWVGAAF  174
                L+S DPT +D  WFYI AT HR   IIMQ* AFSAA +LG+N+  I   +GHW  AAF
Subject   7154  LKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAF  7327

Range 14: 7178 to 7345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 27/56(48%) 0/56(0%) Minus/Minus
Query       25  KYDLLTKSSTNPMPNPNDNGGIILAQIPSC*KSNSLHDDPHLSMSCCTNVKPRHII  192
                ++D L K ST+PMP P  NG ++ AQ   C*K   LHD   L +SC +NVKP  I+
Subject   7178  RFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPIL  7345

Range 15: 7159 to 7344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 31/62(50%) 0/62(0%) Minus/Minus
Query        6  NMTYLRKAAPTQCPTPTTMGG*FWPKSPAAEKAIHCMMIHTYLCPVAPM*NHDISSDVGSPD  191
                ++T    AA  QCP+  +M   F P S AAEKA +CM+I+  LC VA M*N  +SS VGS D
Subject   7159  DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLD  7344

Range 16: 7156 to 7323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 26/56(46%) 0/56(0%) Plus/Plus
Query        3  EIRGSYVR*YVVVLHWCNRT*IGVDHHAVNCFFSSWGFGPKLSPHCRWGWALGWCC  170
                EI+ S  R   +VLH C +T   +D+HAV C FSS   G K   H +  WALG CC
Subject   7156  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCC  7323

Range 17: 7155 to 7322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 28/56(50%) 0/56(0%) Minus/Minus
Query        2  QHQPNAQPQRQWGDNFGPNPQLLKKQFTA**STPIYVLLHQCKTTTYHRT*DPLIS  169
                QH+PNAQ   QW   F P  +LLK+  TA* S    VL  QCKT+ Y    D LIS
Subject   7155  QHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7322

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 9

Range 1: 6482 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 80/196(41%) 0/196(0%) Minus/Plus
Query      350  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL  937
                V +M+ +V  L  + F      +   ++VH+VPGSGK++LIRE +  +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS    +GFD  FSDP+QN      AHF+   + RFG NT   L S G++++S + DE+I  + F  ++EG +IC  K   D    ++ +++LPC+VRG+TF+VVT +
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 2: 6251 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 38/63(60%) 0/63(0%) Minus/Plus
Query      965  EMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI  1153
                E  NL+NCIDNYAIEVSYAY +GE   + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I
Subject   6251  ETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 3: 7109 to 7150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/14(64%) 0/14(0%) Minus/Plus
Query      269  YIAATRHRKKLIIM  310
                YIA TRH KK+ I+
Subject   7109  YIALTRHSKKIQIL  7150

Range 4: 6250 to 6420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 33/57(58%) 0/57(0%) Plus/Minus
Query      984  EIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPIS  1154
                E EH      LT N TQL*CAS SSS      +SP  *A +TSIA*LSMQF RL +S
Subject   6250  ETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVS  6420

Range 5: 6883 to 7065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 26/61(43%) 0/61(0%) Plus/Minus
Query      354  KVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPK  536
                KVTTS V PRT QGSL S+     KS+     Q++ PS+S       ++SS L+L  L P+
Subject   6883  KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR  7065

Range 6: 6598 to 6828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 30/77(39%) 0/77(0%) Plus/Minus
Query      591  K*ASLGTLTF*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK  821
                K*A   +  F* GSE   S P  +  +RYSSSM  LP    P     M  P+  G SG+P  KA      +++SLI+
Subject   6598  K*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR  6828

Range 7: 6251 to 6394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 23/48(48%) 0/48(0%) Plus/Minus
Query     1010  ISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHF  1153
                + N EPHTVVVC +F F       L   V I  LNCI++NA+L+V  F
Subject   6251  VLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNAILEVVCF  6394

Range 8: 6246 to 6380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 22/45(49%) 0/45(0%) Plus/Minus
Query     1024  TAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHE  1158
                T+HSCSV    LHSS    T P  +H  PQLH+ QC+S G  F +
Subject   6246  TSHSCSVHPFLLHSSTWKVTPPWSKHMKPQLHNCQCNSGGCLFQQ  6380

Range 9: 6246 to 6419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 28/58(48%) 0/58(0%) Minus/Plus
Query      985  LVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEISTR*GAQF  1158
                L+K  T R AL  MQLR+ M T W S     *+K+K  HTTTV GS L   T *   F
Subject   6246  LLKQTTSRIALTIMQLRFHMLTPWGSHFPST*VKKKWMHTTTV*GSLLSTPTF*NVLF  6419

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 8

Range 1: 6662 to 7129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 64/156(41%) 0/156(0%) Minus/Plus
Query      473  VVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL  940
                +V+IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS    +GF+ LFSDPYQN      AHFI   + RFG  T + L + G+N+ S + D V   + F L
Subject   6662  LVLIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL  7129

Range 2: 6403 to 6585 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 33/61(54%) 0/61(0%) Minus/Plus
Query      974  REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  1156
                RE  NLENCIDNYAIEVS AY++GE     ++  E++AHYNCVRF++ + H ++ +I  LF
Subject   6403  RETRNLENCIDNYAIEVSCAYQMGENLNLYLSPHEMDAHYNCVRFIILHNHLLKSNIKDLF  6585

Range 3: 7130 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 22/45(49%) 0/45(0%) Minus/Plus
Query      341  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR  475
                ++ EG +IC  KE  D  A H+ ++KLPC+VRGATFD VT +  +
Subject   7130  VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 4: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/15(53%) 0/15(0%) Minus/Plus
Query      269  FYIAATRHRKKLIIM  313
                +Y+A TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 5: 7126 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 30/67(45%) 0/67(0%) Plus/Minus
Query      279  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS  479
                N  LCLV+A      ++      + KVT S VAPRT QG+L S  C A KS+ S  +QI  PS S S
Subject   7126  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS  7326

Range 6: 6781 to 6975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 26/65(40%) 0/65(0%) Plus/Minus
Query      627  GSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK  821
                GSEN   KP     DRYSS M  LP    P    L+ +P     SGTP V A  L   + +  IK
Subject   6781  GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTASILWFLIKACFIK  6975

Range 7: 6405 to 6476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 17/24(71%) 0/24(0%) Plus/Minus
Query     1083  SPSL*A*DTSIA*LSMQFSRLPIS  1154
                SP  *A +TSIA*LSMQFSR  +S
Subject   6405  SPIW*AQETSIA*LSMQFSRFRVS  6476

Range 8: 6502 to 6555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 8/18(44%) 0/18(0%) Plus/Minus
Query     1004  VLISN*EPHTVVVCFNFL  1057
                V++ N EPHTVV+  + +
Subject   6502  VIVQNDEPHTVVMSIHLM  6555

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 7

Range 1: 6667 to 7134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 64/156(41%) 0/156(0%) Minus/Plus
Query      473  VVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL  940
                V +IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS    +GF+ LFSDPYQN      AHFI   + RFG  T + L   G+N+ S + D V   + F+L
Subject   6667  VNLIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL  7134

Range 2: 6400 to 6582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 35/61(57%) 0/61(0%) Minus/Plus
Query      974  REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  1156
                RE  NLENCIDNYAIEVS AY++GE     ++ +EV+AHYNCVRF+V++ H ++ +I  LF
Subject   6400  RETRNLENCIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF  6582

Range 3: 7135 to 7269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query      341  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR  475
                +D EGV+IC  +   D    H+ ++KLPC+VRGAT+D+VT +  +
Subject   7135  VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK  7269

Range 4: 6399 to 6548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 31/50(62%) 0/50(0%) Plus/Minus
Query     1008  LFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISR  1157
                L  T  RTQL*CASTS         SP L*A +TSIA*LSMQFSR  +SR
Subject   6399  LCCTMKRTQL*CASTS*GDRYKFKFSPIL*AQETSIA*LSMQFSRFLVSR  6548

Range 5: 7131 to 7331 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 31/67(46%) 0/67(0%) Plus/Minus
Query      279  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS  479
                N  LCLV A     L+S         VT S VAP T QGSL S LC   KS+    +QI TPS S S
Subject   7131  NLVLCLVKATKRSGLTSSSRGFS*INVTMSYVAPLTWQGSLYSTLCHLRKSSTLSSRQIITPSGSTS  7331

Range 6: 6816 to 6989 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 25/58(43%) 0/58(0%) Plus/Minus
Query      618  F*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKL  791
                F*YGSE    KP     DRYSS +   P    P    LM +P     SGTP V A  L
Subject   6816  F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML  6989

Range 7: 7352 to 7411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 10/20(50%) 0/20(0%) Plus/Minus
Query      202  YADRQWGDSFGPIRRLLKRH  261
                Y    W D+ G I RL KRH
Subject   7352  YTHCNWKDTLGIIWRLRKRH  7411

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 6

Range 1: 6702 to 7166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 64/155(41%) 0/155(0%) Minus/Plus
Query      473  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL  937
                V IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS    +GF+ LFSDPYQN      AHFI   + RFG  T + L   G+N+ S + D V   + F+L
Subject   6702  VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL  7166

Range 2: 6399 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 35/62(56%) 0/62(0%) Minus/Plus
Query      971  REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  1156
                RE  NLENCIDNYAIEVS AY++GE     +  +EV+AHYNCVRF+V++ H ++ +I  LF+
Subject   6399  RETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK  6584

Range 3: 7167 to 7301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query      341  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR  475
                ++ EGV+IC  K   D    H+ ++K PC+VRGATFD+VT +  +
Subject   7167  IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK  7301

Range 4: 7163 to 7285 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 23/41(56%) 0/41(0%) Plus/Minus
Query      357  VTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS  479
                VT S VAPRT QG+L S LC   KS+    +QI TPS S S
Subject   7163  VTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS  7285

Range 5: 6818 to 7051 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 30/78(38%) 0/78(0%) Plus/Minus
Query      588  MK*ASLGTLTF*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK  821
                MK*A   +  F  GSE     P     D+YSS M  LP    P    L+Y+P  L  SGTP V A  L   + +  IK
Subject   6818  MK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASILLFRIKACFIK  7051

Range 6: 6401 to 6547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 26/49(53%) 0/49(0%) Plus/Minus
Query     1008  LFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPIS  1154
                L  T  RTQL* ASTS      +  SP L A +TSIA*LS+QFS+  +S
Subject   6401  LCCTMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSKFLVS  6547

Nucleotide Sequence (396 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 13 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
40
80
120
160
200
240
280
320
360
396

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
268.2 1261.7 42% 2.613e-71 71% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 7510 to 7890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
268.2 bits(579) 0.0 114/127(90%) 0/127(0%) Minus/Plus
Query        5  HSYMYCLFGILVLVGIAIAIQILAHVDNSSGSHQGCFIRATGESILIENCGPSEALASTVREVLGGLKALGISHITEEIDYRC*IG*MASQVGKLPGESNEAFEARLKSLELARAQKQPEGPNTPNT  385
                HSYMYCLFGILVLVGI IAIQILAHVD+SSG+HQGCFIRATGESILIENCGPSEALASTV+EVLGGLKALG+S   EEIDY C*IG*MASQ+GKLPGESNEAFEARLKSLELARAQKQPEG N P T
Subject   7510  HSYMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPT  7890

Range 2: 7506 to 7883 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
241.6 bits(521) 0.0 108/126(86%) 0/126(0%) Plus/Minus
Query       12  GVFGPSGCF*ALANSSDFSRASNASFDSPGSLPT*LAI*PI*QR*SISSVIWLIPKAFKPPNTSLTVDARASLGPQFSIKIDSPVALIKQPW*LPLLLST*ARIWMAIAIPTKTRIPNRQYMYECN  389
                G   PSGCF*ALANSSDFSRAS ASFDSPGS P *LAI PI*Q *SISS   L PKAFKPP+TS TVDARASLGPQFSIKIDSPVAL+KQPW LPLLLST*ARIWMAI IPTKTRIPNRQYMYEC+
Subject   7506  GALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQYMYECD  7883

Range 3: 7503 to 7871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 100/123(81%) 0/123(0%) Minus/Plus
Query       24  VIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLYQGHWRVYFD*KLWPKRGPCINSEGGVGRFEGFRN*PYY*RXXXXXXXXXNGESGW*APRRIK*GI*SPAEITGVG*SSKAARR  392
                +IAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQ PRLL+ GHWRV FD*KL PK GPCI+ EGG GRFEGFR *P  *RN*LSLLNWLNG+S W  PR IK*G *SPA+I GV *SSKAA R
Subject   7503  LIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGR  7871

Range 4: 7505 to 7870 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
207.3 bits(446) 0.0 100/122(82%) 0/122(0%) Plus/Minus
Query       25  LLAAFEL*PTPVISAGLQMPHLIRRGAYQPDSPXXXXXXXXXXXXXYG*FLKPSNLPTPPSLLMQGPRLGHNFQSK*TLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAI  390
                L AAFEL* TP I AGLQ PHLI RG  Q D PF+QFNNDNQFLQ +G* LKPSNLP PPS  MQGP LG +FQSK TLQWP**SNLG CHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAI
Subject   7505  LPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAI  7870

Range 5: 7504 to 7827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 83/108(77%) 0/108(0%) Plus/Minus
Query       68  PGFKCLI*FAGEXXXXXXXXXXXXXIINFFSNMANS*SLQTSQHLPHC*CKGLAWATIFNQNRLSSGPDKATLVTATTVVYMSKDLDGNCNSYQDQNSKQTIHV*MQL  391
                PGFK LI*F GE  NLT H  NLT IINFF++ AN *SLQTSQHL H  CKGL WA +FNQN LSSGP++ATLV ATT VYMSKDLDGN NSYQDQNSKQTIHV*M+L
Subject   7504  PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRL  7827

Range 6: 7505 to 7585 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 25/27(93%) 0/27(0%) Minus/Plus
Query      310  NCIHTCIVCLEFWSW*ELQLPSKSLLM  390
                N IHTCIVCLEFWSW*EL LPSKSLLM
Subject   7505  NRIHTCIVCLEFWSW*EL*LPSKSLLM  7585

Range 7: 7790 to 7882 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 22/31(71%) 0/31(0%) Minus/Plus
Query       13  SSPANQMRHLKPG*NHWSWLELKSSQKAQTH  105
                +SP NQMR LKPG*N WS LELKSS+K   H
Subject   7790  NSPVNQMRLLKPG*NRWS*LELKSSRKVLMH  7882

Range 8: 7625 to 7711 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 22/29(76%) 0/29(0%) Minus/Plus
Query      184  GPLESLF*LKIVAQARPLHQQ*GRCWEV*  270
                GPLES F*LK  AQ RPLH  * RCWEV*
Subject   7625  GPLESQF*LKTAAQVRPLHPL*RRCWEV*  7711