Queries
Nucleotide Sequence (781 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
451.9 | 1774.2 | 35% | 3.171e-126 | 46% | NC_016509 | |
128.4 | 199.2 | 15% | 7.674e-29 | 54% | NC_003604 | |
94.5 | 94.5 | 11% | 1.236e-18 | 48% | NC_010434 | |
101.9 | 168.0 | 11% | 7.678e-21 | 48% | NC_018458 | |
88.6 | 146.2 | 22% | 2.309e-19 | 22% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 5492 to 6241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
451.9 bits(980) | 0.0 | 204/250(82%) | 0/250(0%) | Minus/Plus |
Query 31 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA 780 G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG+I EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R + +V +S V +DGK S+ K L PVPSSGV SSSGESVAT QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA Subject 5492 GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYCKREATEGKRVKGEVTPQSRVSVNDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA 6241
Range 2: 5491 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
414.4 bits(898) | 0.0 | 189/250(76%) | 0/250(0%) | Plus/Minus |
Query 32 AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP 781 AFAT LKFASYTR PGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA PIV F+ L +VATLSPEEE TP LGTG R L++ D FPS T D TS R+PSVASR *STVALR+V+LTLPSSKDST CL SRCIP LITKTSPS +CS I PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P Subject 5491 AFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRTVATLSPEEELTPELGTGPSRPLASFDVFPSFTDTRD*GVTSPLTRLPSVASRLQ*STVALRNVILTLPSSKDSTECLKSRCIPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP 6240
Range 3: 5492 to 6223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 127/244(52%) | 0/244(0%) | Plus/Minus |
Query 49 EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP 780 EIRV+H+* +ILV +RK V VRFSN+I+ QLDE +E P *+H+ELN G STR LQI AVYDIIE D V +* PT L+ TP LHS +S L AL G +TF R + HRS TF L LP+ Y G + F A SS AL +IHS +A C H P IQR HR+L I LHPRAHH+D+T+ ++ML NLS LIR HSK S TIQI+ +N + R VA LIISM P Subject 5492 EIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPNGRHTFA*RRTNP*TWHRSQ*TFSFLRRLPVIHRYPGLRSNFAFNALAFSSFALAIIHSGVA*CNTHPPFIQRFHRMLKITLHPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKP 6223
Range 4: 5491 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.5 bits(512) | 0.0 | 126/250(50%) | 0/250(0%) | Minus/Plus |
Query 32 RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC 781 R SC***EML +W + C+ + EWSGS+*SA+E*D +D RA + * L DE GDAA *A GG+FG* E E+ Q +CGL +AR Y* A +R +SI +* E V G *+S TCA+ F KC R KR +VYY SCGDGV G+LG+R P L ++ Q*C ILQ SE GY* P +*VH+V S A+ R +HQ E + S C*NGQ+ R Q+S +RES T V REFQ G +C Subject 5491 RVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGDAA*F*AFGGIFG*REGEYYITQRHCGLLQARSY*RQAR*RRSYSSIPGIGE*REDVEGS*RSTGTCAKFRG*FFFRRKCGDRSAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKC 6240
Range 5: 5574 to 6215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 108/214(50%) | 0/214(0%) | Minus/Plus |
Query 57 ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT 698 EC RIR+ERL SI V S **ARGCS I+S RW+LWM G * H A LWI SA LL A K ++P Y+ + GR +R +KV DLC+ L + KV P KA +S+L LWR GV R VG * +T S + SMMSYTA+I*R RVL+P++LSS C * G S SSS* I LLKRT+ T+FR +TRI Y C T Subject 5574 ECGRIRRERLSSIFWVMVMSS**ARGCSVILSIRWNLWMKGG*VLHYATPLWIIASAKLLKASALKAKLLLNPGYR*MTGRRRRKLKVYWDLCQVQGLVLLQAKVWRPFGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTT 6215
Range 6: 5493 to 5534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Plus |
Query 738 GFMLMMRDATRLA* 779 GFMLMMR+AT L * Subject 5493 GFMLMMRNATHLV* 5534
Range 7: 5667 to 6056 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 60/130(46%) | 0/130(0%) | Plus/Minus |
Query 216 GPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA 605 G QYP+ SD CSI HH*+ R G L PN P +TPSPQL +* T RF R HF +K+ AQV D P T S H + I+ R AC Q* RA NPQ C + S S HPK PP A Subject 5667 GLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAERSPHFRLKKN*PLNLAQVPVDL*LPSTSSRHSPIPGIEE*LRL*RACLQ*LRACNNPQWRCVM*YSPSLHPKIPPNA 6056
Range 1: 2067 to 2351 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 55/95(58%) | 0/95(0%) | Minus/Plus |
Query 496 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTEND 780 G HADDE CY G SVVTVNL+G A F V+ N++GKI + L DGDV+VM GMQ+ HKH V S DGR SITLRN TVDY+ R + + E D Subject 2067 GFHADDEPCYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGMQQTHKHRVTSHTDGRCSITLRNKTVDYEARKGDEDSEYEED 2351
Range 2: 2075 to 2308 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 42/78(54%) | 0/78(0%) | Plus/Minus |
Query 539 *STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA 772 *STV R VML PS + T CL* CIP IT TSPS S IFP F T A P + TVTT P *H SSSA Subject 2075 *STVLFRRVMLQRPSV*EVTLCL*VCCIPGPITYTSPSCSSFFSIFPD*FSFTSKVASPCKLTVTTEPPGR*HGSSSA 2308
Range 1: 2356 to 2619 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 42/88(48%) | 0/88(0%) | Minus/Plus |
Query 517 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATD 780 G+HADDE CY ++VT+NL G A F + N L D+ M SGMQ H+HAV SL +GRVSIT RN T DY ++ A D Subject 2356 GLHADDEECYEPDSTIVTLNLYGNADFLIERNTDKASETITLQHNDMLFMPSGMQVTHRHAVCSLYEGRVSITFRNKTKDYLRKSAPD 2619
Range 1: 2107 to 2358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 40/84(48%) | 0/84(0%) | Minus/Plus |
Query 523 HADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDA 774 HADDE+CY G VVT+N++G A F ++ N ++ L+DGDV VM G+Q ++KH+V +GR+S+T RN TVDY DA Subject 2107 HADDEKCYLPGSCVVTLNMHGTAEFMLKENGKEEVHRVTLEDGDVLVMPEGVQENYKHSVLVKSEGRISLTFRNKTVDYMNSDA 2358
Range 2: 2106 to 2357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 40/84(48%) | 0/84(0%) | Plus/Minus |
Query 524 ASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA* 775 AS F+*STV +V L PS ST CL* P IT+TSPSS F ++N A P F VTT P *H SSSA* Subject 2106 ASEFM*STVLFLNVRLIRPSDLTSTECL*FS*TPSGITRTSPSSRVTLCTSSFPFSFSMNSAVPCIFRVTTQEPGR*HFSSSA* 2357
Grapevine leafroll-associated virus 3, complete genome
Range 1: 5013 to 5231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 35/73(48%) | 0/73(0%) | Minus/Plus |
Query 556 HADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLR 774 HADDE CY S ++TVNL G+A F + K GK+ + GD F+M G QR H H+V S+D+GR+S+T R Subject 5013 HADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR 5231
Range 2: 5409 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 18/81(22%) | 0/81(0%) | Minus/Plus |
Query 115 KCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV 357 + T + E V K W+ ++PV+ + + + +K +E +E++ YLA + L AR++ T + V Subject 5409 RSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV 5651
Nucleotide Sequence (425 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
289.3 | 1059.4 | 24% | 1.307e-77 | 59% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 3221 to 3616 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.3 bits(625) | 0.0 | 123/132(93%) | 0/132(0%) | Plus/Plus |
Query 27 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDIL 422 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ MRA EKAKAE KGLEVD ++ITEDDIL Subject 3221 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSMRAAEKAKAESKGLEVDEREITEDDIL 3616
Range 2: 3211 to 3528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 89/106(84%) | 0/106(0%) | Minus/Minus |
Query 17 RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK 334 RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKT+QFH + Subject 3211 RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTIQFHKFPR 3528
Range 3: 3221 to 3619 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 79/133(59%) | 0/133(0%) | Minus/Minus |
Query 27 RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ 425 RQ+II I+ F L RL H QN V + ILSDL++RPV ++QPVSH +LIQ* RSISET + RHQM*R+ GR TYE KIL+HQ++Q+RP LQH QS+L+HPRKERATKLPYDQ+D IPQ Subject 3221 RQDIIFSDFSLINLQTFALSLRLFCGSHAPQNFVRFTN*ILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RHRGRNRTYEPKILIHQHVQIRPQRLQHSQSVLIHPRKERATKLPYDQNDTIPQ 3619
Range 4: 3222 to 3530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 67/103(65%) | 0/103(0%) | Plus/Plus |
Query 28 CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF* 336 CGI S *SYGSFVALSFRG* S L* CCR G W *W +IF SYV++ P+ RYIWWR+ VSLIDR YWMR *WLTGC TGR RSLRI + T+F* Subject 3222 CGIVSF*SYGSFVALSFRG*MSTL*LCCRRWGLIWTC*WIKIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRI*FVKRTKF* 3530
Range 5: 3217 to 3486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 60/90(67%) | 0/90(0%) | Plus/Plus |
Query 23 DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH 292 ++VEL+R DRTEAL*LFLFGDE V FD AG V G DG +FSVRTY + H ATSGGG+ LFH**IDVIG*G +GLQVA RDE+ Subject 3217 ELVELYRFDRTEAL*LFLFGDE*VRFDYVAGAGV*SGRVDGSKFSVRTYGSCHGDATSGGGDQPLFH**IDVIG*GFDGLQVAPP*RDEY 3486
Range 6: 3234 to 3464 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 53/77(69%) | 0/77(0%) | Minus/Minus |
Query 40 ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRR 270 ATCKP PHPITSIYQ*N+ PPPDVA W YVRTEN PS P T PA SK T SSPKRKSYKASVRS+R Subject 3234 ATCKPSNPHPITSIYQ*NKGWSPPPDVASPWQEPYVRTENFDPSTRPD*TPAPAT*SKRTHSSPKRKSYKASVRSKR 3464
Nucleotide Sequence (326 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
186.4 | 927.6 | 25% | 7.881e-47 | 77% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 4886 to 5200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.4 bits(409) | 0.0 | 89/105(85%) | 0/105(0%) | Minus/Plus |
Query 4 RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE 318 R IVDKGKKVVDYDEELNMRKEK RL +EKRREEHGGLIPVVFKEPKCE +DD+S+EESEGYLCLSS+KVERG+A+PSGCKSAD K ISEESPERKT+SSAII++ Subject 4886 RRIVDKGKKVVDYDEELNMRKEKCRLIIEKRREEHGGLIPVVFKEPKCEGKDDESEEESEGYLCLSSTKVERGDASPSGCKSADCKSISEESPERKTKSSAIIED 5200
Range 2: 4880 to 5038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 47/53(89%) | 0/53(0%) | Plus/Minus |
Query 166 LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL 324 LPLTLRFFKHNRN*ATMLF+SLL+ QPALLLPHIQLFVVINDLLPFID+ P+L Subject 4880 LPLTLRFFKHNRN*ATMLFSSLLYNQPALLLPHIQLFVVINDLLPFIDNTPRL 5038
Range 3: 5065 to 5202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 38/46(83%) | 0/46(0%) | Plus/Minus |
Query 2 SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*P 139 +S IIADD VFLSGLSSDI SADLQPLG ASPRSTL ELKHR*P Subject 5065 TSSIIADDFVFLSGLSSDILLQSADLQPLGEASPRSTLVELKHR*P 5202
Range 4: 4939 to 5199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 67/87(77%) | 0/87(0%) | Minus/Plus |
Query 5 YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR 265 YAEGE Q Y EETRRAWWPNSCCV*RTEV* G G RERRLSVLKL QSG W +AQWL*VR* + YIGGKPGEKD IVSDY+R Subject 4939 YAEGEVQVDYREETRRAWWPNSCCV*RTEV*GEGRRIGRRERRLSVLKLYQSGAWRRFAQWL*VR*LQEYIGGKPGEKDEIVSDYRR 5199
Range 5: 4887 to 5150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 71/88(81%) | 0/88(0%) | Minus/Plus |
Query 54 GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY 317 G SIKGRRSLITTKS*ICGRRSAG L RRD KSMVA*FLLCLKNRSV GR R KRAKAICA*A PKW+V LRPVVVSPL+ VY Subject 4887 GVLSIKGRRSLITTKS*ICGRRSAG*L*RRDEKSMVA*FLLCLKNRSVRGRTTNRKKRAKAICA*ALPKWSVATLRPVVVSPLIARVY 5150
Range 6: 4977 to 5192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 56/72(78%) | 0/72(0%) | Plus/Minus |
Query 12 *SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRV 227 *SLTI SFSPGFPPIY+ +QRTYNHWA H PLW SLSTDSLRSL P P+ HTSVL*TQQELGHHAL V Subject 4977 *SLTISSFSPGFPPIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRSLLPIRRPSPHTSVL*TQQELGHHALLV 5192
Range 7: 4884 to 4931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 13/16(81%) | 0/16(0%) | Plus/Minus |
Query 273 LRRNQRPSSLYRRCTS 320 LRRNQRPSSLYR+ S Subject 4884 LRRNQRPSSLYRQYAS 4931
Nucleotide Sequence (909 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
566.0 | 2224.1 | 39% | 1.725e-160 | 50% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 13965 to 14867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
566.0 bits(1229) | 0.0 | 237/301(79%) | 0/301(0%) | Plus/Plus |
Query 3 VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP 905 VM*+A++* T +S+C + *L M TALVAPIVGDKGE L+LLRNLPND S +SWLPNAGRMNDDFF++GEAY+LQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGD++IHT+RFYRDKNLIEQ+YTQRKGGV VLKSRPVD+SIVNFH+ER E MTS+VNKQ RLMEV TNGSSLG+SQ+KVPVDSLITV+VSLESKK+SCD L EL+P +VGSI+KFDGTVDYKEI R RKYIFPYKTFRDSKY E+L EAIAARNETAA QPETE P HP A+V YVTPPEGV+ITN A P Subject 13965 VM*QAQY*ETPVSSRCRFRKL*LIMTTALVAPIVGDKGEYLSLLRNLPNDNSQESWLPNAGRMNDDFFKIGEAYKLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDMLIHTLRFYRDKNLIEQVYTQRKGGVGSVLKSRPVDSSIVNFHNERKETMTSMVNKQNRLMEVFTNGSSLGSSQIKVPVDSLITVIVSLESKKVSCDGLSELVPNDVGSIVKFDGTVDYKEINRERKYIFPYKTFRDSKYREILTEAIAARNETAAAQPETETVPVHPIANVTYVTPPEGVSITNAAIP 14867
Range 2: 13964 to 14866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
463.4 bits(1005) | 0.0 | 227/301(75%) | 0/301(0%) | Minus/Minus |
Query 2 GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDASXXXXXXXXXXXXXX*V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT 904 G+A VI TPSGGVT*+T A+GC G SVSG AAVSFRAAIAS S+YFESL VLYGK+YFR+R ISL*STVPSNF IEPTS G NS+S SH+ FFDSN+T TVIKLSTGTL WL PKLEPFV TSINL CL TIEVI SFLSL*KFTID STGLLL T TPPFL V* CSIKFLSR*NL VC+++SPSRGSI TLSTPIVS G DLI TDTLIV PIERFCNLYASP LKKSSFIRPALGSQ+S + SFGKFL+K K+SPLSPTIGATNAV I+NH LH E V A +IT Subject 13964 GIAAFVIDTPSGGVT*VTFAIGCTGTVSVSG*AAAVSFRAAIASVKISRYFESLNVLYGKIYFRSRFISL*STVPSNFTIEPTSFGTNSESPSHETFFDSNETITVIKLSTGTLIWLDPKLEPFVKTSINLFCLLTIEVIVSFLSL*KFTIDESTGLLLRTLPTPPFLCV*TCSIKFLSR*NLRVCISISPSRGSIITLSTPIVSFGIDLIETDTLIVYPIERFCNLYASPILKKSSFIRPALGSQDSWELSFGKFLSKDKYSPLSPTIGATNAVVIINHSFLNLHLELTGVS*Y*ACYIT 14866
Range 3: 13965 to 14759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.5 bits(643) | 0.0 | 155/265(58%) | 0/265(0%) | Minus/Minus |
Query 3 FISCGDRFI*XXXXXXXXXXXIRKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY 797 F+SC +RF * LP+ I K LIRK++L A YFL+I+ V+ + R + YQF E I *+FL *R +S+QTV+ DFDLA S* RAIR FH*P LL+++ H F SF +KI++*RIHRSTFE T DA+FSL VDLF *+LVTIES SVY +TV W YYYSKHAHRFF FNR+ YIN V YRKIL* IR S+ +EI+IH T VREPR G +IR VSQ* Q L I N RSH*R CH *S L T * C S HY Subject 13965 FVSCSNRFG*DLPVFRIPKRLIRKDILPFAIYFLVIDRSVEFHNRAHVVRYQFGESIA*NFL*L*RNYNSDQTVDWDFDLARS*TRAIRKDFH*PILLINH*GHSFFSFIMKIYD*RIHRSTFENTTDATFSLRVDLFN*VLVTIES*SVYKHITVPWFYYYSKHAHRFFWDRFNRNRYINRVPYRKIL*LIRLSYFKEIIIHPTRVREPRFLGIIIRQVSQ*RQILAFIPNYRSH*RRCHY*SQLSKSTP*AHWCFLVLSLLHY 14759
Range 4: 14811 to 14867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 10/19(53%) | 0/19(0%) | Minus/Minus |
Query 849 RGSCVSYSHTLWWCHIDYV 905 R SC+ Y +TLWW +I +V Subject 14811 RDSCICYRYTLWWSYIGHV 14867
Range 5: 14317 to 14868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.2 bits(400) | 0.0 | 101/184(55%) | 0/184(0%) | Minus/Minus |
Query 355 KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL 906 +G*L L HPLV HR R SDAP LFQA F FV++SL L +P N * SYTE+ T R+LFP N+ R+ S+ + V IRRV+ M S LT L Q*SNC+ GL* G L+*SHS LPLT+SA +S F FFH EN +LT+PPVYF* H R LFF CR V L+SCHDRIL Subject 14317 QG*LHLLSIHPLVELHRSRSRSDAPELSLFQAEPPLFRFVQQSLRLRSPGISNP*TSYTERYTSVRDLFPCNRPFRRISQSSPRRSVPIRRVHRMKLSLTLTKL*Q*SNCRLGL*FGSILN*SHS*RLPLTYSAY*PLRS*FLFFHYENLRLTNPPVYF*EHYRRHLFFACRPVQLSSCHDRIL 14868
Range 6: 14083 to 14265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 41/61(67%) | 0/61(0%) | Minus/Minus |
Query 121 RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN 303 RPSFL I*S++IH* C LSKDFVTYT L *RN HS D R*GAK G HS SFS+K N Subject 14083 RPSFLLGSI*SKQIH*SCTLSKDFVTYTPLLF*RNHHSSDPR*GAKILGNYHSASFSVKTN 14265
Range 7: 13963 to 14031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 19/23(83%) | 0/23(0%) | Minus/Minus |
Query 1 ITAVQYYTLSSLVFLRTELVTLL 69 ITA YTLSSLVFL TELVTLL Subject 13963 ITAF*IYTLSSLVFLSTELVTLL 14031
Range 8: 13964 to 14263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 72/100(72%) | 0/100(0%) | Plus/Plus |
Query 2 SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG 301 SNVTSSVLRNTSELKV* * AVINN N VSGSY W * VF F EKL E* PR LAP*R S+E* FL + R V*VTKSFDR+H+*CI D*I +RNDG Subject 13964 SNVTSSVLRNTSELKV*I*KAVINNDNGVSGSYSWG*RRVFVFTEKLAE**FPRILAP*RGSDE**FL*NRRGV*VTKSFDRVHD*CICFD*IDPKRNDG 14263
Range 9: 14402 to 14866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 77/155(50%) | 0/155(0%) | Plus/Plus |
Query 440 GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP 904 GG VN +FS *KK D + A+ VNGS EWL* R P+QSP QFD+C S VR++E+ M TLRI T D ++ R+ L GN SR +V+ SV*D * F++ G + SD TK N +A*NR +GASD R+LC++TRGC N SYP Subject 14402 GGFVNRKFS**KKRNYDLNG**AE*VNGSLYEWL*FRIEPNQSPSRQFDHCYSFVRVKESFMRWTLRIGTERRGLDCEIRRNGRLQGNKSRTEVYLSV*DV*GFEIPGDLNRSDCCTKRNSGGSA*NRDSSGASDRERDLCNSTRGCIDNKCSYP 14866
Range 10: 14312 to 14362 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 12/17(71%) | 0/17(0%) | Plus/Plus |
Query 350 HYKILS*QEFNRTNLHS 400 H KILS*QE N T LH+ Subject 14312 HSKILS*QELN*TGLHA 14362
Range 11: 14071 to 14499 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 93/143(65%) | 0/143(0%) | Plus/Plus |
Query 109 IRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM 537 I+ S+ LY*ET RM P LGSLT V *M IS + E+RI YKIFR* T+LMY RLN KKRWACLE***+H TV YTL*DSIVTR * N+ST KEK AS V+SKVDRW+RQ *IF +KE K * + SR G*WK RM Subject 14071 IKASICLY*ETCRMIIPKNLGSLTRVG*MMISLK*ERRISYKIFR*GTRLMYLFRLNRSQKKRWACLE***NHGTVICLYTL*DSIVTRT*LNRSTRKEKVASVVFSKVDRWIRQS*IFIMKEKKL*PQWLISRIG*WKSLRM 14499
Range 12: 14560 to 14868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 51/103(50%) | 0/103(0%) | Plus/Plus |
Query 598 YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL 906 +R*++RK H ++S N Y+ R *+ T I RK* A S FRIR L I++ G * KR HE K R SLKQ+ R IR RT* M* HQRV * QL L Subject 14560 FR*SQRKFHAMDSPNWYRTTWARL*NSTERSITRK*IANGSISFRIRRLGIRNTGRS*PKRLLHETKQRRLSLKQRQFRCIRSRT*PM*LHQRVYR*QMQLSL 14868
Nucleotide Sequence (430 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
260.0 | 1170.4 | 30% | 8.983e-69 | 63% | NC_016509 | |
154.1 | 247.9 | 25% | 6.551e-37 | 31% | NC_004667 | |
111.5 | 157.5 | 40% | 4.408e-24 | 37% | NC_005065 | |
147.7 | 243.8 | 35% | 5.59e-35 | 55% | NC_029783 | |
158.7 | 240.6 | 38% | 2.735e-38 | 42% | NC_022072 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 8295 to 8696 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 125/134(93%) | 0/134(0%) | Minus/Plus |
Query 2 VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL 403 V F GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK EL I+DRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL Subject 8295 VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL 8696
Range 2: 8276 to 8479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 56/68(82%) | 0/68(0%) | Plus/Minus |
Query 219 QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP 422 QTTTKDGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP K +T ++ +P Subject 8276 QTTTKDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP 8479
Range 3: 8564 to 8695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 38/44(86%) | 0/44(0%) | Plus/Minus |
Query 3 RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN 134 +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N Subject 8564 KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN 8695
Range 4: 8333 to 8692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 79/120(66%) | 0/120(0%) | Minus/Plus |
Query 6 YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R 365 ++G+E ARFVG GAAEIWRC+++VREH G+ D VGDIFERFGT+ LWR*LFDFF+ RAA +* DS*REFW R Q+ +PV L LFE+FGED GSLLF +*VV E K GKR Q*R Subject 8333 HDGEERARFVGRGAAEIWRCKYVVREHFGSYDFVGDIFERFGTVFGCCLWR*LFDFFEERAADR**DS*REFWVRPQVNVPVCSLFLFEIFGEDTGSLLFFT*PV*VVFEAKLGKRAQ*R 8692
Range 5: 8335 to 8697 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 83/121(69%) | 0/121(0%) | Minus/Plus |
Query 1 QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC 363 +W R SSFCR GRSGDLEV+ G*GT W * CWRYL*KVRN FVAMTL*FF+R SC M GFLKRVL S S+ AS L FVR+IW*G RI VIF LSC *S*AWKE+PMKIC Subject 8335 RWGRTSSFCR*GRSGDLEVQIRG*GTLWFL*LCWRYL*KVRNRLWLLFVAMTL*FFRRTSCR*MIGFLKRVLGSTSS*RASVLLIFVRNIW*GHRIIVIFYLTRLSCF*S*AWKESPMKIC 8697
Range 6: 8317 to 8694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 79/126(63%) | 0/126(0%) | Plus/Minus |
Query 4 DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT 381 +LHW LFP L S+TT* +NN+DP SSPN SNK+K TG * R QNSLQES H AA KKSKSHRHK + + VPNLSKISPT S P CSLT HLQISAAP PTKRA S P * ++ T Subject 8317 NLHWALFPSLASKTT*TGQVKNNNDPVSSPNISNKNKEHTGTLT*GRTQNSLQESYHLSAARSSKKSKSHRHKQQPKTVPNLSKISPTKS*EPKCSLTTYLHLQISAAPLPTKRARSSPS*PRNHT 8694
Range 7: 8316 to 8696 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 84/127(66%) | 0/127(0%) | Plus/Minus |
Query 2 QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL 382 QIFIG SFQA*LQ+QLK + KIT+IR PHQI RTK+R LA E+E KTLFKNP+I QL L KNQRVIATN++ FRTFQRYRQQ H +Q VP*P + TSRSPLRP+RQNEL+L H ++ ++L Subject 8316 QIFIGLSFQA*LQKQLKRVR*KITMIRCPHQIFRTKIRSTLAR*LEVEPKTLFKNPIIYLQLVLRKNQRVIATNNNQRRFRTFQRYRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIIL 8696
Grapevine leafroll-associated virus 3, complete genome
Range 1: 7780 to 8106 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 65/109(60%) | 0/109(0%) | Minus/Plus |
Query 68 FQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCY 394 F GEYDSVV ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS++ L I+ +L ++FGFD+K+ Q PYFCSK+LV+ D + Subject 7780 FFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLF 8106
Range 2: 7752 to 7934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 27/61(44%) | 0/61(0%) | Plus/Minus |
Query 240 SEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP 422 S P N V T +FPNHV APP PTD T+SF ++TT SYSP K + + +P Subject 7752 SNPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTP 7934
Range 3: 7945 to 8139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 20/65(31%) | 0/65(0%) | Plus/Minus |
Query 35 LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD 229 L E+ KWI K I + LRTK+ +L ++TK + +N I+ Q K + +I N++ Subject 7945 LNEEFKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLPTKYKAIITANYN 8139
Range 1: 6388 to 6708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 48/107(45%) | 0/107(0%) | Minus/Plus |
Query 68 SGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCY 388 S EY+SV + L +SV AQRR+GG+NTWLGNT+V M LLA + V GDDSL+ S++ + + L GFD+K + TPYFCSKY++ T D + Subject 6388 SSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGNTIVNMVLLAYVKNFDPNTFVCFSGDDSLVLSRDPIYFDFFKLSLELGFDVKFTPVATPYFCSKYIINTEDRIF 6708
Range 2: 6348 to 6548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 25/67(37%) | 0/67(0%) | Plus/Minus |
Query 228 TKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSPDR 428 TK F A+N + T V PNHVF PP L CA T+ ++ T SYS L ++ +P R Subject 6348 TKVFGSKFLT*ASNTMFTIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKR 6548
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 8593 to 8910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 63/106(59%) | 0/106(0%) | Minus/Plus |
Query 77 FQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPD 394 F SGEYDS V+M EL LS+G+QRRSGGANTWLGNT+VL++LL+I L LV+ GDDSLIFSKE+L ++ L +++GFD+KL+ PYFCSKY V+T D Subject 8593 FFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGNTMVLLSLLSILLNKRPFDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTND 8910
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 8844 to 9155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 67/104(64%) | 0/104(0%) | Minus/Plus |
Query 83 FQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRT 394 F GEYDS+V++ ELVLSVG+QRRSGGANTWLGNT+VL TLL++ L+G+E VVV GDDSLIFS+ EL I+ L ++FGFD+KL Q PYFCSK+LV+T Subject 8844 FFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQT 9155
Range 2: 8852 to 9016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 29/55(53%) | 0/55(0%) | Plus/Minus |
Query 222 TTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP 386 TTT S P N V ST VFPN VFAPP PTDKT+S T SYSP Subject 8852 TTT**SSFPLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSP 9016
Nucleotide Sequence (325 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
98.5 | 98.5 | 32% | 2.357e-20 | 43% | NC_004667 | |
221.9 | 1121.2 | 27% | 1.639e-57 | 80% | NC_016509 | |
98.5 | 154.1 | 24% | 2.357e-20 | 42% | NC_022072 | |
99.4 | 124.7 | 26% | 1.938e-22 | 54% | NC_029783 | |
48.6 | 48.6 | 21% | 2.361e-05 | 36% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 5832 to 6146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.5 bits(209) | 0.0 | 45/105(43%) | 0/105(0%) | Plus/Plus |
Query 1 GQNVLGVFGYVAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVN 315 G N+ + FHDA+NL G +++A+ +VGE KS N+PPGGGKTT LVDE+ TAN GS+ DIN A++ R+ E A T NS +VN Subject 5832 GDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVN 6146
Grapevine leafroll-associated virus 1, complete genome
Range 1: 6371 to 6664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(479) | 0.0 | 94/98(96%) | 0/98(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP 324 + FHDAMNLRGCVRLAKRALVGEYMK+VRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP Subject 6371 LVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP 6664
Range 2: 6382 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 91/94(97%) | 0/94(0%) | Minus/Minus |
Query 42 GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS 323 GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLT FMYSPT ALLANLTHPRKFIAS Subject 6382 GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIAS 6663
Range 3: 6373 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 86/97(89%) | 0/97(0%) | Plus/Plus |
Query 33 SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA 323 SVS*CDEFAWM *V *EG GR IHEECEVVRGEFTTWWRQD+ASR*R+F KEEACEDCYSEH KRC Y*LGYSSQRREEG RFGSEDRELVDC*F A Subject 6373 SVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*FPA 6663
Range 4: 6377 to 6664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 84/96(88%) | 0/96(0%) | Minus/Minus |
Query 37 GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK 324 GP INNPRVRGLRYQI LLLPFSGSNSRVNI SAS VRCSNLRTLLPS+I VNETR LASTRW*IHRGQPH LHVF+DQ PLS PN STQIHRIMK Subject 6377 GPGINNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMK 6664
Range 5: 6351 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 68/85(80%) | 0/85(0%) | Plus/Plus |
Query 11 CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG 265 C ++ * FMMR*ICVD LG LRG WS NT*R+*GCPR*IHHLVEAR+RVSLT+I EGRSVRRLLQRT EAL+ILTRLFEPEKG Subject 6351 C*FVMIY*CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEKG 6605
Range 6: 6372 to 6575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 59/68(87%) | 0/68(0%) | Minus/Minus |
Query 32 YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL 235 Y QRF CSL*QSSHASSF+N RQRDA SCLHQVVNSPRTTSHSSCI RP PS* T* IHANSSHHETL Subject 6372 YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL 6575
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 6926 to 7210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.5 bits(209) | 0.0 | 40/95(42%) | 0/95(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVN 315 + FHDA+N GC+++A+ LVG+ KS + VN+PPGGGKTT +V+++ + + + TAN GSA DIN + + + +D A T NS +VN Subject 6926 LVFHDALNFCGCLKIARLGLVGKEFKSFNYTCVNAPPGGGKTTMMVEKFLEQPRTTTMVTANLGSADDINKKLDKKLEELGLDRAATTINSKVVN 7210
Range 2: 6937 to 7134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 32/66(48%) | 0/66(0%) | Minus/Minus |
Query 42 LISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS 239 L+S+ALP AV I K ST VV PPPGG T L L PTK LA HP+KF AS Subject 6937 LMSSALPKLAVTIVVVRGCSKNFSTIIVVFPPPGGALTQV*LKLLNSLPTKPSLAIFKHPQKFKAS 7134
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 6660 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.4 bits(211) | 0.0 | 41/76(54%) | 0/76(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAR 258 V FHDA+NL+ + LA+ +L+G+ S+++ VNSPPGGGKTTRL D + RK IATAN GSA DIN I R Subject 6660 VPFHDALNLKAVISLARTSLIGKNFSSIKMKYVNSPPGGGKTTRLCDTFMKRKDGVVIATANVGSAEDINKEIAKR 6887
Range 1: 4494 to 4694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.6 bits(100) | 0.0 | 24/67(36%) | 0/67(0%) | Plus/Plus |
Query 55 LRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRA 255 L C++L K E S + ++PPGGGKTT ++ + R I TAN S+ DIN + A Subject 4494 LANCMKLGKFYDFEERFSSSVVVLEDTPPGGGKTTNMLTRFRSNPYRTCILTANLESSLDINKQLNA 4694
Nucleotide Sequence (489 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 5897 to 6382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
376.8 bits(816) | 0.0 | 157/162(97%) | 0/162(0%) | Plus/Plus |
Query 2 VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH Subject 5897 VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH 6382
Range 2: 5896 to 6375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.0 bits(740) | 0.0 | 147/160(92%) | 0/160(0%) | Minus/Minus |
Query 1 TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT 480 TSRSSQTSTASCL++TA +F PGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTR PGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIV FD LCRT Subject 5896 TSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRT 6375
Range 3: 5897 to 6382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 117/162(72%) | 0/162(0%) | Minus/Minus |
Query 2 MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN 487 M++**II +*H +L R+Y L I PWH+S CG+QKD+ +++DS PVFR I EIRV+H+* +ILVNC+RKLVSYS VRFSN+ISR LQLDEQIETSPC*IH++LN RG STRGLQIFAVYDIIEGLYPQDWV T +PTVL++TPHLHSCADS L* ALPN Subject 5897 MKH**IITN*HGILPRQYCLEISPWHESACGYQKDVFQIEDSRPVFRRICNHFEIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPN 6382
Range 4: 5898 to 6383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 116/162(72%) | 0/162(0%) | Plus/Plus |
Query 3 FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM 488 FGKA Q LLSAQLWRWGV RTVG V+TQSWGYNPSMMSYTAKI*RPRVL+PR+LS CI*HGDVSICSSS*S REI LLKRT+E*DTSFR QFTRI Y C TRIS+ +M RKTG+LS + SFW PQ L CQG I + Y R K C* MIY* M Subject 5898 FGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTTRISKWLQMRRKTGRLSSIWNTSFWYPQALSCQGEISRQYCRGKMPC*FVMIY*CFM 6383
Range 5: 5898 to 6383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.4 bits(538) | 0.0 | 116/162(72%) | 0/162(0%) | Minus/Minus |
Query 3 HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE 488 H LVDH +LA L S + + +LA+K LW PKR +R* SRLP H P *NSR T V DSRKL+AETCVLL CPF*Q+DLA ASA**TNRNIAVLNT**TQ PG QYPR SDLCSIRHH*RIVSPRLG H PNCP +YTPSPQLCR**+LTRFAE Subject 5898 HETLVDHHKLARHLASTILPRDFALARKCLWIPKRRIPNRR*SSRLPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQDLALASA**TNRNIAVLNT**TQSPGLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAE 6383
Range 6: 5899 to 6312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 105/138(76%) | 0/138(0%) | Plus/Plus |
Query 4 SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAR 417 SAKRVK YYRHSCGDGVY GQLG+ * PSLGDTILQ*CRILQRSE RGY* PG+*V++VFSTAMFRFVHQAEA ARS C*NGQ+SRTQVSA SLRES T V REFQ G +C GRRD+YL + LFG+HR+F AR Subject 5899 SAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKCAGRRDDYLRFGIRLFGIHRHFRAR 6312
Grapevine leafroll-associated virus 3, complete genome
Range 1: 5655 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 30/73(41%) | 0/73(0%) | Plus/Plus |
Query 269 KFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 K P VYE+LPG VY + + ++ +DG + DL YV + G F G+++ AV++ D + VCDD+LVFH Subject 5655 KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVLIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFH 5873
Range 2: 5394 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 18/86(21%) | 0/86(0%) | Plus/Plus |
Query 5 RQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV 262 R+ ++T E + K W+ ++PV+ ++ + + +K +E +E++ YLA + L AR++ T + V Subject 5394 REVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV 5651
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 6689 to 6937 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 34/83(41%) | 0/83(0%) | Plus/Plus |
Query 239 VAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 +A D + KFP YE LPGLR Y + + V + EDG + D+ YVFL+ G F G++L + + L+CD LLVFH Subject 6689 IAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPYVFLMEKGIFCKGQSLCGGMHGDETALLCDSLLVFH 6937
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 6426 to 6671 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 35/82(43%) | 0/82(0%) | Plus/Plus |
Query 242 AKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 AK D VG KFP + ++ PGLR + K + E +TI+DL+YVF VS F+ GR++ + + D LVCDDL+ FH Subject 6426 AKLDNVVGDKFPKSYLDSTPGLREHSMLNKNLYVVSESVSTIYDLDYVFSVSRNRFIRGRDINVLCTNNDKFLVCDDLVPFH 6671
Nucleotide Sequence (646 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
303.5 | 857.9 | 49% | 1.228e-81 | 38% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 3989 to 4603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.5 bits(656) | 0.0 | 127/205(62%) | 0/205(0%) | Plus/Plus |
Query 9 NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ 623 +KSS+L GGGL+L+AS++AFRRQ+ +A G + VR+S+ +K K+VLGL ++K+ G +R A+ QGSV+++K +A AE +RV+ + E+GYIYGDSLNVQTVCLTA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++ E RA KL G+A LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ + Subject 3989 SKSSLLMFGGGLLLMASMLAFRRQILNRAHGLAQGVRTSLKKTKGKLVLGLSDLKERLGSVRRNAVVSAQGSVRSLKVVARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE 4603
Range 2: 3985 to 4593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.5 bits(525) | 0.0 | 120/203(59%) | 0/203(0%) | Minus/Minus |
Query 5 CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ 613 C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK A P NF AL +S L H AA P PTLP+YLNR G RIADFS* DD+ A AVRHTV*TF+ESP*MYPIS TRSL SA A+ F TDP* AFL P L F +PNT+ E RT NP*A K R A +EAIS RPPP + DDL + Subject 3985 CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALATTFNERTDP*AETTAFLLTLPSLSFKSLRPNTSLPFVFFKEVRTPCANP*ALFKIWRRKASMEAISNRPPPNISNDDLLR 4593
Range 3: 3986 to 4594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 78/203(38%) | 0/203(0%) | Minus/Minus |
Query 6 LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP 614 LP++ + IH+PTLRE NLQ G TFL QRQ Y Q + P L +T Q RY +++ P +P+PL R K+ FL+AR I K H LNVQR+ V+VP SR+ + L H SLS D P PE+L +AQT*H R D P+S +NL + S+Q TS * R P Subject 3986 LPVEASNALIHVPTLREHNLQAGCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPRYHLQ*TH*SLSRNDGIPSYTPESLFQVAQT*HQLTFRLFQGGADTLR*PMSSVQNLAPKSEHGSHQ**TSPEH*QRRLTP 4594
Range 4: 4264 to 4599 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 47/112(42%) | 0/112(0%) | Plus/Plus |
Query 284 G*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA 619 G + VHLR ERSD V Y +R+ ++ L EI A AV V+ E + SG E+ Q QG E+ S G D KERC Q A+ VPEAWG V* L AA+ Subject 4264 GRDGVHLRRLVERSDRVPYGRRISIIEL*EIGDSYITRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*GSQLADCVPEAWGRV*GRY*LLQAAS 4599
Range 5: 4131 to 4208 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 14/26(54%) | 0/26(0%) | Plus/Plus |
Query 151 C*VWAI*RRVSGSQRGKRSNVLRDRC 228 C*V A *+R SG G S LRD+C Subject 4131 C*V*AT*KRDSGV*EGMPSFRLRDQC 4208
Nucleotide Sequence (646 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
363.5 | 1205.8 | 57% | 1.041e-99 | 50% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 15702 to 16343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
363.5 bits(787) | 0.0 | 150/214(70%) | 0/214(0%) | Minus/Plus |
Query 4 QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG 645 +NVL + FGG+HGAKLRPFVYYG SYYYNE+M PT+IS D+ DYV++EI+L LSKK VVTAA +NGID+PCLGYALKNG+LRFGHEIIF V DD LHYL+D STRNKRIEGLYTE +KVD GDVLL DV+MAG L+R YSN G+EPS+HV NV WK+LF ++AS T T V EN+MLYYEV D+NLEDVAK C Y EIP ATVAG Subject 15702 KNVLELGVDFGGTHGAKLRPFVYYGGSYYYNEQMVPTDISEDVLDYVNVEISLTLSKKRVVTAALINGIDVPCLGYALKNGTLRFGHEIIFKVDDDSLHYLLDKSTRNKRIEGLYTELVVKVDGGDVLLGDVDMAGTPLDRAYSNKTGIEPSIHVANVGDWKSLFVLSASDTRTGVEQPYTENAMLYYEVVDRNLEDVAKTCGYFEIPTATVAG 16343
Range 2: 15746 to 16255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 114/170(67%) | 0/170(0%) | Plus/Minus |
Query 92 IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA 601 I FS C T V+V+EA +NK+FQ TF TC EGS P+LFEY LS+ +PAISTS + TSP ST +SVY+PSIRLFLVD+S R*CK SS T IISCPNRS PFF+A PRHG SIP +AAVTT FFER++LIS T*SN S DISVG I SL**YE P**TKGR+ A Subject 15746 IAFSV*GCSTPVLVSEADKTNKLFQSPTFATCIEGSIPVLFEYALSSGVPAISTSPNKTSPPSTLTTNSVYNPSIRLFLVDLSNR*CKLSSSTLKIISCPNRSVPFFKA*PRHGTSIPFIKAAVTTLFFERVKLISTFT*SNTSSDISVGTICSL**YEPP**TKGRSLA 16255
Range 3: 16243 to 16344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 21/34(62%) | 0/34(0%) | Plus/Minus |
Query 3 IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQ 104 I+Q *RSVF NS LRLL+FY++LHS+AL+F+ Subject 16243 IQQQ*RSVFQNSRTFSLRLLNFYRLLHSKALHFR 16344
Range 4: 15726 to 15962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 44/79(56%) | 0/79(0%) | Plus/Minus |
Query 385 VSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI 621 VSE QR +FQ + *ARH+DS+ *S RY FL*+ + +LNV++I+YI RY+SW H I+II* T+VNKG * M+ PE+ Subject 15726 VSESQRSVFQGVT*ARHVDSVY*SSRYDSFL*ESQTDLNVHIIQYIFRYISWNHLLIIII*TTVVNKGS*FSTMSAPEV 15962
Range 5: 16023 to 16196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 31/58(53%) | 0/58(0%) | Plus/Minus |
Query 151 EQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFI 324 +Q P SHV NV+ LDP V*+ S+* TCH+++S * +T +DL F IQPFDSFI Subject 16023 KQAFPVSHVRNVYRRLDPRFV*VRSV*WRTCHINVSQ*NVTAIDLND*FSIQPFDSFI 16196
Range 6: 16245 to 16343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 22/33(67%) | 0/33(0%) | Plus/Minus |
Query 4 SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IF 102 S N S RYF+IA F YVF*I I YFIV+H IF Subject 16245 SSNSSGRYFKIAARFRYVF*ISIDYFIVKHCIF 16343
Range 7: 16024 to 16344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 53/107(50%) | 0/107(0%) | Minus/Plus |
Query 3 INESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD 323 INESKGCI N RS V +Y E WQV * E QT +GSS TL T E G+ C QL ++ + + K+QC TMK I+I*KT*+K AI KYR L L D Subject 16024 INESKGCILN*SLRSMAVTFYWETLIWQVRH*TERTQTKRGSSLLYTLRTWETGKACLFYQLLTRGQASNNPIPKMQCFTMK*SIEI*KT*RKRAAILKYRPLLLLD 16344
Range 8: 15730 to 15966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 41/79(52%) | 0/79(0%) | Minus/Plus |
Query 381 SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR 617 SG +M +Y PLFT V+HII M++ QL YR++Y I TLR + + QRK *R L ES CRA* *K RC SDT+ Subject 15730 SGALMVLNYDPLFTTVVHIIIMSKWFQLIYRKMYWIM*TLRSV*LSQRKES*RLL**TESTCRA*VTP*KTERCDSDTK 15966
Range 9: 15727 to 15951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 40/75(53%) | 0/75(0%) | Plus/Minus |
Query 396 AATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN 620 AA FS LGTA RF LK PL FSL++ +*SQ N I+L I QL F H NNMN+ SKQR V H+ PR+ Subject 15727 AAFRFSRRNLGTARRFRLLKQPLRLFSLRESN*SQRSHNPIHLPIYQLEPFAHYNNMNHRSKQRVVV*HHECPRS 15951
Range 10: 15991 to 16053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 14/21(67%) | 0/21(0%) | Plus/Minus |
Query 294 ILYTALRFVYFWLMYLLDNVN 356 I YT LRFVY +YL+DNVN Subject 15991 IQYTTLRFVYS*SIYLIDNVN 16053
Range 11: 15800 to 16048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 45/83(54%) | 0/83(0%) | Minus/Plus |
Query 299 NDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY 547 N N* I R I L *D S KEK NG F+ NR AVPR+ EK AA+RTR+Y *R+FTLS R I+ +*TNRR VY Subject 15800 NGSN*YIGRCIGLCER*DQFDSLKEKSRNGCFNKRNRRAVPRLRLEKRNAAIRTRNYF*S**RQFTLSIR*ID*E*TNRRVVY 16048
Nucleotide Sequence (418 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
216.4 | 1119.8 | 31% | 1.093e-55 | 60% | NC_016509 | |
72.1 | 72.1 | 13% | 3.075e-12 | 49% | NC_029783 | |
40.5 | 94.4 | 17% | 1.834e-08 | 40% | NC_016417 | |
41.8 | 93.9 | 15% | 2.475e-08 | 35% | NC_011702 | |
40.0 | 93.0 | 17% | 4.499e-08 | 40% | NC_016416 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 9676 to 10050 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 91/125(73%) | 0/125(0%) | Plus/Plus |
Query 13 LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGKP 387 LYGLA VFPRTS++ F+F+T +V +F +SY+ LL ENRG*TG RT FIV*VRSSTVD MEVGLDFGTT ST CFS+P++DD GCV+LVNS FVPTQ+FIGSDMTYSIGHRAYSDF+ GKP Subject 9676 LYGLATVFPRTSIYRFSFYTSSLVFCRIFYRKSYSALLCENRG*TGARTRKFIV*VRSSTVDGMEVGLDFGTTFSTACFSVPSEDDSGCVTLVNSPFVPTQVFIGSDMTYSIGHRAYSDFVAGKP 10050
Range 2: 9676 to 10047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 92/124(74%) | 0/124(0%) | Minus/Minus |
Query 13 FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK 384 FA +I V SV NA+ H+TSYKNLRWNE RIH R+AP II R +RKT R +SSAEIKSHFH +YG*ATYL DE G TGLSSIFAQQCRIALT KYT KH TS+K ETVYRSSWENCRKSIK Subject 9676 FACYKIGVGSVPNAIRHITSYKNLRWNERRIHQRYAPGIIFRWNRKTSRTESSAEIKSHFHSVYG*ATYLYDEFPGSRTGLSSIFAQQCRIALTIKYTTKHKATSIKRETVYRSSWENCRKSIK 10047
Range 3: 9677 to 9982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 85/102(83%) | 0/102(0%) | Plus/Plus |
Query 14 FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF 319 FMDLRQFSHELLYTVSLFILV LCF VYF+VRAIRHCCAKIEDKPV P NSS+RYVAQP* WKWDLISALLS R VFR RKMI GA R *IL SFQRRF Subject 9677 FMDLRQFSHELLYTVSLFILVALCFVVYFIVRAIRHCCAKIEDKPVREPGNSSYRYVAQP*TEWKWDLISALLSVRLVFRFHRKMIPGA*RW*ILRSFQRRF 9982
Range 4: 9675 to 10049 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 89/125(71%) | 0/125(0%) | Minus/Minus |
Query 12 GLPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R 386 GLP KSE*ALCPML V+SLPIK CVGTN EFTN THP SS G EKQ VL VVPKSSPTSI STVELRT TMN LVL PVYPRFS N+ *L + N +++T V*K K+ EVRGKT ASP*R Subject 9675 GLPATKSE*ALCPMLYVISLPIKTCVGTNGEFTNVTHPESSSDGTEKQAVLKVVPKSSPTSIPSTVELRTYTMNFLVLAPVYPRFSHNSAE*LLR*NIRQNTRLLV*KEKRYIEVRGKTVASP*R 10049
Range 5: 9669 to 10058 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 81/130(62%) | 0/130(0%) | Plus/Plus |
Query 6 SVSLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHT 395 ++SLWTC SFPTNF F F Y C IL *EL+ V RKSRINR ++Q IHR+GT*LNRR +GSGT*FRHY+Q+ LFF R* VR V EF VRSNA FYRK*+D+ HW QSLL F RQT+ T Subject 9669 TLSLWTCDSFPTNFYIPFLFLY**PCVLSYILS*ELFGTVVRKSRINRCENQEIHRIGT*LNRRRNGSGT*FRHYFQYGLFFGSIGR*FRVRNVGEFSVRSNAGFYRK*YDV*HWAQSLLRFCSRQTRGT 10058
Range 6: 9671 to 10048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 76/126(60%) | 0/126(0%) | Minus/Minus |
Query 8 VCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKDT 385 VC N+S+LC QC S HFL*K ALERT NS T RT +HL KN+ * *CRNQVPLP LRLSYVP R*ISW +RFILDFR T+ SS++KI+ + Q Y+K N + KFVGKL QVHK++ Subject 9671 VCLLQNRSRLCAQCYTSYHFL*KPALERTENSPTLRTRNHLPMEPKNKPY*K*CRNQVPLPFRLRLSYVPIR*ISWFSHRFILDFRTTVPNSSYDKIYDKTQGY*YKKRNGI*KFVGKLSQVHKES 10048
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 10283 to 10441 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 26/53(49%) | 0/53(0%) | Plus/Plus |
Query 202 MEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRA 360 MEVG+DFGTT ST+C+++ D CV + S++VPT+I + D +Y+IG+RA Subject 10283 MEVGIDFGTTFSTLCYNVGEDADDCCVRIAGSIYVPTEILVYPDNSYTIGYRA 10441
Grapevine leafroll-associated virus 6, complete genome
Range 1: 8919 to 8984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 15/22(68%) | 0/22(0%) | Plus/Plus |
Query 187 STVDRMEVGLDFGTTISTICFS 252 +T+ MEVG+DFGTT ST+CFS Subject 8919 TTILIMEVGIDFGTTFSTLCFS 8984
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 8784 to 8837 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 15/18(83%) | 0/18(0%) | Plus/Plus |
Query 199 RMEVGLDFGTTISTICFS 252 RMEVG+DFGTT ST+CFS Subject 8784 RMEVGIDFGTTFSTLCFS 8837
Grapevine leafroll-associated virus 4, complete genome
Range 1: 8926 to 8994 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 16/23(70%) | 0/23(0%) | Plus/Plus |
Query 184 SSTVDRMEVGLDFGTTISTICFS 252 S+T MEVG+DFGTT ST+CFS Subject 8926 STTGIIMEVGIDFGTTFSTLCFS 8994
Nucleotide Sequence (567 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
404.7 | 1320.2 | 33% | 3.399e-112 | 44% | NC_016509 | |
171.1 | 380.2 | 42% | 8.291e-51 | 39% | NC_029783 | |
151.8 | 208.3 | 30% | 4.724e-36 | 41% | NC_022072 | |
120.2 | 227.0 | 41% | 1.707e-32 | 39% | NC_005065 | |
92.3 | 365.6 | 26% | 2.1e-31 | 32% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 6689 to 7234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.7 bits(877) | 0.0 | 165/182(91%) | 0/182(0%) | Minus/Plus |
Query 1 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI 546 IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI Subject 6689 IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI 7234
Range 2: 6688 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
312.2 bits(675) | 0.0 | 153/180(85%) | 0/180(0%) | Plus/Minus |
Query 8 GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM 547 G REKIGSSAFFNLT TTS VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SSANST SLGVTNVFSL +NGI FLSPY TSFTPI TTVN*N+PLC+IYTSS+ Subject 6688 GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSI 7227
Range 3: 6767 to 7000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 40/78(51%) | 0/78(0%) | Plus/Minus |
Query 235 HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV 468 HL +RA RS +P+R H+IR+Q S ISHR +T ISRAPV*N+ +L+ L +F+ F+R DKRLF + + L+LI+V Subject 6767 HLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YVTYISRAPV*NVSVLNQLFREFYGFIRRDKRLFPVDKWYLILISV 7000
Range 4: 7043 to 7234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 34/64(53%) | 0/64(0%) | Plus/Minus |
Query 1 DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH 192 +M LPR+DRI LLQ + +I++ LALRFM HI P R HLR + LHF FILSHC V+ Subject 7043 NMRLPREDRIICLLQSYQYNITIRLALRFMRR*HIWPLFSSRNFHLRNNPLHFCFFILSHCQVN 7234
Range 5: 6689 to 6727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 10/13(77%) | 0/13(0%) | Plus/Minus |
Query 508 LKHALVQHIHLID 546 LKH+L+QHIH ID Subject 6689 LKHSLMQHIHFID 6727
Range 6: 6850 to 7233 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 65/128(51%) | 0/128(0%) | Minus/Plus |
Query 2 ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY 385 AD V+ FIQVP *C+L ++DD*+AR +V EW V * G++T LF +GA +S G FT+*SGC+ +NDSE*K NAE C EDG G + +A C ++ *SARQD+ C ++EEG S L A +Y Subject 6850 AD*VH*HFIQVPC*CMLRIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFTV*SGCLPDNDSE*KSRNAEGCCEDGNCGWKKEARCVNDA*SARQDVW*CCIGKIEEGR*SDLLAEASY 7233
Range 7: 6690 to 6728 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 9/13(69%) | 0/13(0%) | Minus/Plus |
Query 507 SMRCICCTRACFN 545 SM+CICC R CF+ Subject 6690 SMKCICCIRECFS 6728
Range 8: 6768 to 7232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 82/155(53%) | 0/155(0%) | Minus/Plus |
Query 3 TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI 467 T IR R+ KRRLS L N + S S FHTGA LM+V R*LI E C RM C L G DL AL +RC +L R LY MKRM T*Q*LRMK++KCR L RRW R G+MC*+ MKRKAR M * *RR I S RG+ I Subject 6768 TEIRIRYHLSTGKRRLSRLMKP*NSRKS*LSTLTFHTGALLMYVTYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLYCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLEKRGQMC*RRMKRKARRMVMLYW*D*RRQMIRSSRGSLI 7232
Range 9: 6768 to 7082 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 55/105(52%) | 0/105(0%) | Plus/Minus |
Query 153 AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR 467 AF FHSESL HPLH VK P E + AP +KS +V P * T HS T LA QSS N HQ GTCMK + T+SA +I ++ * *QTSF * S SY R Subject 6768 AFLLFHSESLSGKHPLHTVKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIRNIHQQGTCMKCQCTQSALPRILRLH*A*QTSFPC**MVSDSYLR 7082
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 6993 to 7391 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 71/133(53%) | 0/133(0%) | Minus/Plus |
Query 148 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR 546 IDEVY+LHKG + +M KE + YGD NQIPF NREK FV +++ + +IEYT++SYRCPADVCY+LS M + GK YPNGV D RPLRS +PI P +A+ + DV+LT TQ EKAE+ R Subject 6993 IDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIR 7391
Range 2: 7401 to 7520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 21/40(52%) | 0/40(0%) | Minus/Plus |
Query 4 AGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPH 123 + R V T HEAQGKT+ V LVRLKKA+D + PH Subject 7401 SASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPH 7520
Range 3: 6980 to 7393 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 58/138(42%) | 0/138(0%) | Plus/Minus |
Query 146 ALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSMPNQT 559 +L SAFS V VK TS S AS G IG R G +S TPFG FP + I D+ * TSAGHL + VYSI S +TN+FS F GIW SP S + + PLCN TSS+ T Subject 6980 SLINSAFSACVYVKKTSTSSRIASDGPFIGITRILRNGLLSSKACTPFG*QGFPSKFTILDKR*HTSAGHL*DMLVYSISVSLGLIAE*CMTNIFSRFEXGIWLTSP*HIASLHRMAARQKVSWPLCNR*TSSISPNT 7393
Range 4: 7071 to 7289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 30/73(41%) | 0/73(0%) | Plus/Minus |
Query 250 AQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV 468 AQ S + +HSIR+ FP +I H Q+I ++ V +G+LDL + F R V DK LF+I + +LV IA+ Subject 7071 AQWSPVFKGLHSIRVTRFPIQIHHLGQEIAHVRWTSVGYVGVLDLRLIGFDRRVVHDKHLFAI*KXDLVDIAI 7289
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 7244 to 7642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 64/133(48%) | 0/133(0%) | Minus/Plus |
Query 148 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR 546 +DEVYM+H+G+ Q + G KE + YGD +QIPFINREK F + ++ I+YT +YRCP DVC++LS++ DS+G++ Y GV T +RSFEK PI + D EADVYL TQ EK EM+R Subject 7244 VDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKR 7642
Range 2: 7610 to 7771 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 22/54(41%) | 0/54(0%) | Minus/Plus |
Query 4 KAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPH 165 + + ++ K ++ + R V+T HEAQGKT+ VVL R K+A+D +F+ QPH Subject 7610 QTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPH 7771
Range 1: 4785 to 5168 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 53/128(41%) | 0/128(0%) | Minus/Plus |
Query 163 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEK 546 IDE +++H G ++ V G EV +YGD QIPFINR ++F N V+ ++ +VSYRCP+DVC +LS D RG YP GV +RP RS I++ D + DV++T TQ+EK Subject 4785 IDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEK 5168
Range 2: 5220 to 5312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 16/31(52%) | 0/31(0%) | Minus/Plus |
Query 4 TTHEAQGKTYRDVVLVRLKKAEDPIFSRQPH 96 T HE QGKT V ++RLK AED +F+ H Subject 5220 TVHEIQGKTVPFVKIIRLKAAEDSVFTMTGH 5312
Grapevine leafroll-associated virus 3, complete genome
Range 1: 6339 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 40/82(49%) | 0/82(0%) | Minus/Plus |
Query 142 EQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAV 387 E + YT SYRCP DVCY+LSSMT ++ YP V D +RS K PI T +D ADVYL MTQ EK++M+R++ Subject 6339 ESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSL 6584
Range 2: 6180 to 6305 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 24/42(57%) | 0/42(0%) | Minus/Plus |
Query 421 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTF 546 +DEV+M+H+G+ QL V + G E + +GD NQIPFINREK F Subject 6180 VDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF 6305
Range 3: 6182 to 6412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 34/77(44%) | 0/77(0%) | Plus/Minus |
Query 314 SVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSS 544 +VI+D *QTS GHLY+ VY+ S + + + N FSLFMNGI F+SP S P+ T + + P C + TSS Subject 6182 TVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSS 6412
Range 4: 6608 to 6709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 22/34(65%) | 0/34(0%) | Plus/Minus |
Query 2 ICGCREKIGSSAFFNLTRTTSL*VLPCASCVVST 103 ICGC SSAFF L TTSL V PCASC V T Subject 6608 ICGCLVNRESSAFFVLNNTTSLNVFPCASCTVIT 6709
Range 5: 6474 to 6575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 11/34(32%) | 0/34(0%) | Plus/Minus |
Query 151 LHFRLFILSHC*VHXXXXXXXXXXXXNWHLFKRA 252 LH RL L H VH+ ++ NW +R+ Subject 6474 LHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRS 6575
Range 6: 6552 to 6710 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 24/53(45%) | 0/53(0%) | Minus/Plus |
Query 1 EMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI 159 +++++ K + + V+T HEAQGKT+ DVVL R KKA+D +F++QPHI Subject 6552 QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHI 6710
Nucleotide Sequence (839 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
599.9 | 2055.7 | 28% | 9.728e-171 | 49% | NC_016509 | |
295.7 | 411.9 | 18% | 3.772e-79 | 35% | NC_004667 | |
283.3 | 381.7 | 21% | 1.999e-75 | 40% | NC_029783 | |
150.4 | 398.8 | 28% | 1.165e-72 | 30% | NC_022072 | |
110.6 | 195.0 | 26% | 8.494e-43 | 36% | NC_011702 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2378 to 3187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
599.9 bits(1303) | 0.0 | 253/270(94%) | 0/270(0%) | Minus/Plus |
Query 1 VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 810 +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV Subject 2378 LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 3187
Range 2: 2566 to 3186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
401.5 bits(870) | 0.0 | 177/207(86%) | 0/207(0%) | Plus/Minus |
Query 2 T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM 622 T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI + Subject 2566 TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFI 3186
Range 3: 2374 to 2508 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 32/45(71%) | 0/45(0%) | Plus/Minus |
Query 680 MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH 814 M PT AL S RVSI QYV+FFAASF TLSTVI SSAV SL H Subject 2374 MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLKH 2508
Range 4: 2396 to 3187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 136/264(52%) | 0/264(0%) | Plus/Minus |
Query 1 YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL 792 +V LS+ D LYHQ Y+Q PL RQFDL+++ ++ +MR LAPRA + VLK IH+ R R+KQI VHTINE+ +*VHL E ++TIS LRYH QTMSLKR RH PR+I+RG+S + NA+RKLM+T+PV ++L+ A *L +TP++ Y+L + M +SIA+ ++S+ Y + S +FH YS A +S Q WKHQAQLEYF + LL L QF+N+*V++V+HE+N M+T R+HL +RD+LR L HAF+CH+ L Subject 2396 HVCLLSVCDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARHGVLKCSIHECRRRIKQIRVHTINEIGI*VHLSE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKHAFDCHNLFL 3187
Range 5: 2499 to 3071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 100/191(52%) | 0/191(0%) | Minus/Plus |
Query 117 LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM 689 L SW T T* F NW K RR+ KYSSCA*CFQ +*+ E A LY + WK+ E+ C L AML I +R * GV +SY A + S TG V ISFL AL L PR I RG+CR RLRDIVW *YRR LMV S +CT* SLIVCT ICL R WI LST ARGA++RM Subject 2499 LVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSDKCT*IPISLIVCTRICLIRRLHSWIEHLSTPCLARGARRRM 3071
Range 6: 2398 to 2511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 20/38(53%) | 0/38(0%) | Minus/Plus |
Query 677 GESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG 790 G+ YDS KR ER EE+HVL +G+A +*+* W HG Subject 2398 GKGYDSRKRA*ERGCEEHHVLPNGHALL*S*SASWFHG 2511
Range 7: 3102 to 3185 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 16/28(57%) | 0/28(0%) | Minus/Plus |
Query 3 RSNCLPRNSGGWS*L**YRPSRIERKLT 86 RSNCL ++SG W * **Y+ S+ ER+ T Subject 3102 RSNCLRKSSGDWL*R**YKRSQTERRHT 3185
Range 8: 2451 to 3155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 116/235(49%) | 0/235(0%) | Plus/Minus |
Query 33 VSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT* 737 VSS L+P PT ETIRP + *HA GSAR +RTQ YP+ S *AN STHDQR+ +LST * NHQ SPVS P+YVP*T ST SS + TR ++ *R EKTD N AC+ T+ + C V YS+++L*S N KHR +Q T+ FA LP V* G L S LETSSTTRIF SS L P++K LS +R+P* Q Y H A P +T* Subject 2451 VSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKTRRTQMFYPRMQTSY*ANTSTHDQRNRNLSTFV*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST* 3155
Range 9: 2542 to 3075 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 93/178(52%) | 0/178(0%) | Minus/Plus |
Query 113 GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH 646 G+S EE ++NIRVVLDVSNR D R P YT GS AK V+C RCL +F +D+K E* + T Q F V LQA L SVFS+RYR+ LV EE VD V*GT* G DTGD *WF ++Q +VLR R*SCVL+FA*+D+ + G*+ *VR +RAEP++AC+ Subject 2542 GASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQTNVLRFRFR*SCVLVFA*YDVCIRG*NI*VRRVLRAEPEDACY 3075
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1806 to 2603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
295.7 bits(639) | 0.0 | 121/266(45%) | 0/266(0%) | Minus/Plus |
Query 7 LTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA 804 L+TA + ++ A+K+++YC +++ C+ +A GFMVDVYD+ ++A+A++KK +F++ LMFP+EL +G + + EL V R+GD + Y VG G+ Y HS S + FF + V+ SG+ + +EY GYR GYH ++C + + R + +F G SLV IP +A +SF+ + LDSDFVDR+YSY LNT TF +RTFEYAV RSQKTHVI G+RVVH KV++SP++ WGLVVA+M QAI DR K+ Subject 1806 LSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKS 2603
Range 2: 2309 to 2599 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 49/97(51%) | 0/97(0%) | Plus/Minus |
Query 11 FFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLN 301 F LS++A I ATT PH SSG+ STL TTR+P MT VF TAYS VL + V +VLS E STKSES+ I L D A +G+ T P N Subject 2309 FALSLIA*AITATTKPHISSGEISTLLWTTRLPVMTWVFCDLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTN 2599
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 2949 to 3719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.3 bits(612) | 0.0 | 113/257(44%) | 0/257(0%) | Minus/Plus |
Query 7 TVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA 777 T++ + + A+K T+C DTR C K GFMVDVYDL +E+A++L K ++ F++ M P+EL ARDG TI EL V+RKGD++ Y+VGG GD+Y HS K+ S V AY+ EY+GYR GYH + + A ++TR++ TT G ++V P L F+++ +D++FV RVY+Y LN T+TF +RTFEYA+S RSQKT++IVGTRV+H KV++ ++ G+V+A++I+A+ R+ A Subject 2949 TIQQLSSSVASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYAMSSFRSQKTNIIVGTRVIHSKVDIEMGDEAGVVLAILIEALRSRRGA 3719
Range 2: 3398 to 3697 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 40/100(40%) | 0/100(0%) | Plus/Minus |
Query 29 ACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRL 328 A I A T+P S STL T VPTM VF + AYS V S V V L YTR T S S I L + +G +T + P VV LV L Subject 3398 ASIRIANTTPASSPISMSTLE*ITLVPTMIFVF*DLNDDIAYSNVRSENVVVTLRA*LYTRCTNSVSTAISLKIRMSRR*NGALTIVFPYIVVCMRLVTL 3697
Range 3: 3107 to 3265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 25/53(47%) | 0/53(0%) | Plus/Minus |
Query 461 FETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNIL 619 F EC SP PPT+ SP R T+ +S IV PS A+SS G+IK S +L Subject 3107 F*KECWYESPVPPTL*VSRSPLRVTTVFNS*IVYDPSLAISSTGSIKTMSKVL 3265
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 3011 to 3322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 62/104(60%) | 0/104(0%) | Minus/Plus |
Query 7 RKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA 318 R V ++F ++VMIP + ++SF+ + LD+DFVDRVYSY LNT S F RTFEYAV RSQKTHVI GTRVVH KVE+S ++ WGLVVA+M QA+ DR K+ Subject 3011 RMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYAVGAVRSQKTHVITGTRVVHSKVEISSDDMWGLVVAIMAQAVKDRLKS 3322
Range 2: 2564 to 2971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 56/136(41%) | 0/136(0%) | Minus/Plus |
Query 358 VMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSL 765 ++ A+++I+YC ++ C + G+MVDVYDL ELA+AL+ K + IF+LC M P+EL A G + + EL V R GD ++Y+VG G++Y H S++ S+ S + SG+ Y VEY GYR+GYH ++ Subject 2564 IISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTV 2971
Range 3: 3046 to 3318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 44/91(48%) | 0/91(0%) | Plus/Minus |
Query 11 FFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIIT 283 F LS A I ATT PH SS + STL TT VP +T VF TAYS V +K++ V YEYTRSTKS S L D + +GI+T Subject 3046 FSLSFTA*AIIATTRPHMSSEEISTLEWTTLVPVIT*VFCDLTAPTAYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMT 3318
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 2263 to 2658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 47/132(36%) | 0/132(0%) | Minus/Plus |
Query 358 EAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSL 753 + KN+T+C C H++ V MVDVYD+ ++ L QA+EKK + C MFP EL DG + P+ V V+R+G+++ Y V D Y V ++S+ ++ V SG YSVE + Y F + Subject 2263 QTLKNLTFCNKPVPCCTHQSTVIIMVDVYDVSLYALLQAMEKKGSLLARCCFMFPPELLNSDGTVVHPDTNVVVTREGELLRYHVANTSDCYTQDVKNVMSYLRNSSVISKSGLVYSVELLNQNGPYLDFQI 2658
Range 2: 2752 to 3009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 39/86(45%) | 0/86(0%) | Minus/Plus |
Query 7 ADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA 264 +DG L ++ +D DFV RV SY N +T DRTFEY +S RSQ T +IVG+++VH+KVELS + L + +A+ R+KA Subject 2752 SDGALISTRLIMDRDFVRRVLSYSANVCNTIDDRTFEYVLSNIRSQTTMMIVGSKIVHNKVELSNDVVVELPATFLREAVRRRRKA 3009
Nucleotide Sequence (493 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 13502 to 13717 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(359) | 0.0 | 71/72(99%) | 0/72(0%) | Minus/Plus |
Query 27 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 242 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGA+V Subject 13502 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAVV 13717
Range 2: 13253 to 13453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.9 bits(305) | 0.0 | 59/67(88%) | 0/67(0%) | Minus/Plus |
Query 291 LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 491 L D VFVKGPGGY+LR SRPSTGQR GD+EVA+REMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME Subject 13253 LPDEYVFVKGPGGYTLRPSRPSTGQRSGDSEVAKREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 13453
Range 3: 13501 to 13716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 68/72(94%) | 0/72(0%) | Plus/Minus |
Query 28 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 243 T APLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNI+C+IAKKKSVRLF*SVLPITSAHKFFNSV+IAVA Subject 13501 TTAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNINCNIAKKKSVRLF*SVLPITSAHKFFNSVDIAVA 13716
Range 4: 13252 to 13452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 50/67(75%) | 0/67(0%) | Plus/Minus |
Query 292 SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK 492 S+SFGGSK++FISG VKISAILKVL +LSPISRLATS SP R*PV+GR+ R *PPGPFTNT++S + Subject 13252 SISFGGSKIIFISGLVKISAILKVLFNLSPISRLATSESPER*PVDGREGRRV*PPGPFTNTYSSGR 13452
Range 5: 13253 to 13717 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 91/155(59%) | 0/155(0%) | Plus/Minus |
Query 27 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ 491 DNG NLL+S F LAVT+ IH++LFFAL +W AK QH LQHCQE++CETFLI +THHFS *IF*F SCC+ +QA SG ++ RN H+LWWFKD++HL I ++FC I+SS L+ HF+ + IP TLTR RSR + ITSR+ HEHI + Q Subject 13253 DNGALNLLVS*FSLAVTVQIHEVLFFALSVW*CAKRQH*LQHCQEKICETFLISVTHHFST*IF*FRRYSCCHCRSHQAGSGRHHNRNFHILWWFKDNIHLGISKDFCYIESSL*LIAHFSLSHFRIPRTLTRRRSRRTESITSRTFHEHILVWQ 13717
Range 6: 13267 to 13725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.5 bits(368) | 0.0 | 83/153(54%) | 0/153(0%) | Minus/Plus |
Query 19 CVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCRQT 477 CVRE +GRL++ ST GSA G+* RNG +NF Y RN + S DE++L*TTKG+G FG +RT LG + NSY IKKFM *SDG*+ SEKSHR LGN A +VD+*H+ R+ EQRRV EF+ *RRA+I+L EG* C+++ Subject 13267 CVRERSGRLYSPSFSTVYGSAFGGF*SG*ARNGR*VKENFQYSRNLY*SRDEYYL*TTKGYGSFGCGADRTRLGDSGSGNSYIYGIKKFMC*SDG*H*SEKSHRFFLGNVAINVDV*HITRH*EQRRVLREFVQ*RRAKINLREG*GRRCQRS 13725
Range 7: 13521 to 13718 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 48/66(73%) | 0/66(0%) | Minus/Plus |
Query 26 N*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 223 N*KIY LK*WV IRKVSQ SWQCCN*C* LA Q RAKKS *I VTAS N*L RRL+ PLS Subject 13521 N*KIYVLK*WVTLIRKVSQIFSWQCCN*C*RLAHHQTLRAKKSTS*ICTVTASEN*LTRRLRAPLS 13718
Range 8: 13251 to 13487 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 43/79(54%) | 0/79(0%) | Minus/Plus |
Query 257 FCWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAW 493 FC MCS*+ REVI LD RVSV GIL+ KW S +EL I QK I R* SLNHQR W+FR +PD AW Subject 13251 FCQTSMCS*KVREVILSVLLDRLRVSVRGILKWLSEKWAIS*RELSI*QKSLLIPR*ILSLNHQRIWKFRLWCRPDPAW 13487
Range 9: 13527 to 13703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 39/59(66%) | 0/59(0%) | Plus/Minus |
Query 41 *PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF 217 *PS K I ARRY NS++TLLCS L C* ST +A LPR++L*DFSD YPSLQ INF Subject 13527 *PSRKLIFARRYCTNSRSTLLCSQCLVMC*TSTLIATLPRKNL*DFSDQCYPSLQHINF 13703
Range 10: 13251 to 13433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 30/61(49%) | 0/61(0%) | Plus/Minus |
Query 311 QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK 493 QR* SS+D *+FL Y*KF PF Q P +ADP VE NLP SRTH+ A+ Subject 13251 QR*YSSRD**RFLLY*KFSLTYRPFLA*PLQNPPNADP*TVEKDGEYNLPDLSRTHTRLAE 13433
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 13788 to 13937 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.6 bits(98) | 0.0 | 20/50(40%) | 0/50(0%) | Minus/Plus |
Query 93 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEY 242 A +S EL L +M +T +++ F LA Q+++T+STS +TE KE+Y Subject 13788 AHIVSEELMKLQQSIMHDTSNEAIAAFVLACFQVVVTYSTSEETELKEQY 13937
Grapevine leafroll-associated virus 3, complete genome
Nucleotide Sequence (388 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
233.1 | 818.5 | 26% | 9.07e-61 | 60% | NC_016509 | |
111.7 | 111.7 | 27% | 3.316e-24 | 43% | NC_029783 | |
109.9 | 109.9 | 26% | 1.17e-23 | 47% | NC_022072 | |
103.9 | 171.6 | 30% | 7.051e-22 | 36% | NC_004667 | |
69.8 | 69.8 | 24% | 1.31e-11 | 34% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 1895 to 2224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.1 bits(506) | 0.0 | 105/110(95%) | 0/110(0%) | Plus/Plus |
Query 2 IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSA AKESLTRAFPELFITFLDSVSSSHSLCNAV SC Subject 1895 MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC 2224
Range 2: 1894 to 2223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 94/110(85%) | 0/110(0%) | Minus/Minus |
Query 1 HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM 330 H+RTALHKL ELETLS+KV+KSSGKALVKLSLA ALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP A+ Subject 1894 HERTALHKLCELETLSKKVIKSSGKALVKLSLATALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI 2223
Range 3: 1895 to 2215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 68/107(64%) | 0/107(0%) | Minus/Minus |
Query 2 DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN 322 + V *TVR RNTI+K Y+KFWKSSRQ TKR+ H+A ILL QC+LLHHEQ R LLV++RHQ A F Q+ PV C*YYP E*IFLI+RIT+A H LLP F R+ Subject 1895 NSVT*TVRARNTIQKGYKKFWKSSRQTFFSHSTKRYRHDALILLPQCILLHHEQLRNLLVEVRHQCAPFFQY*PVSNC*YYPFE*IFLIERITYACHQALLPPFSRH 2215
Range 4: 1900 to 2211 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 63/104(61%) | 0/104(0%) | Plus/Plus |
Query 7 GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQR 318 G R ATE G R+*C +S RSIR DSINN A E R H GDA RED VHDEGG+ GEEE*+R D A*C G + DESFSRTF+N *CFE +QFM R Subject 1900 G*RGATEPGGKRK*CAQSGRSIRRDSINNC*PASTERREHTGDAPRREDFGAVHDEGGYTGEEE*VRRDGSA*CCG*RKFDESFSRTFYNLFG*CFELAQFM*R 2211
Range 5: 1899 to 2060 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 34/54(63%) | 0/54(0%) | Plus/Plus |
Query 6 R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS 167 R K GNR W A*VMR I+KIYS+G*YQQ TG *+K A W*R TRR+ +CS Subject 1899 RLKGGNRAWWQA*VMRSIRKIYSKG*YQQLLTG*Y*KKGAHW*RTSTRRFRSCS 2060
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 2445 to 2762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.7 bits(239) | 0.0 | 46/106(43%) | 0/106(0%) | Plus/Plus |
Query 14 GGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 GG S +AS+S AL ED+F+G+VS++AN++ LKEGS ++ LD ++ + K + L K + +L+ K LT+ FPEL + F DSV SSH +CNAV C Subject 2445 GGSNSFMASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPSVTINPSLTTTEKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMC 2762
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2063 to 2365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.9 bits(235) | 0.0 | 47/101(47%) | 0/101(0%) | Plus/Plus |
Query 29 LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 ++ASV+NALNQE+++ +VS IANRL LK+ S+L+ HLD ++ E+F ++ + +K L K+ + AFPEL ITFLDSV SSH + NAV C Subject 2063 VLASVANALNQEEVYSSVVSGIANRLALKDQSSLLAHLDNRLCEMFAQRDALIREKPNHRCDTMLKPSEKDMIKEAFPELTITFLDSVRSSHPVANAVRGC 2365
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1344 to 1646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.9 bits(222) | 0.0 | 45/101(45%) | 0/101(0%) | Plus/Plus |
Query 29 LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 ++ASV+NALNQE+++ +VS+I NRLVL++ S L++HLD K+ ++F ++ + +K V L +E L FPEL I F DSV SSH NA+ SC Subject 1344 ILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPREREKLRELFPELSIQFSDSVRSSHPFANAMRSC 1646
Range 2: 1349 to 1639 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 35/97(36%) | 0/97(0%) | Minus/Minus |
Query 34 RTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLA 324 R AL * L T S ++SSGK+ + SL+ T F ++S N S F S+ + S NTSLL I++T SS* AL T A Subject 1349 RMALANG*LLLTESENCIESSGKSSLSFSLSRGFRNTSHLCEGFSRIIASL*ENISHNFVSKWESNADWSLNTSLLVILETTDE*TSS*LRALATEA 1639
Range 1: 573 to 848 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(147) | 0.0 | 31/92(34%) | 0/92(0%) | Plus/Plus |
Query 47 NALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAV 322 + LN E ++ ++ + +RL KE S L H+D + L KED L K +C ++ + A+ L AFPEL I + S S H +C V Subject 573 SCLNLETMYGELLKQVTSRLNFKENSDLFLHVDSSLKTLLKEKEDVLSHKFQCSISANIDQDARSILDSAFPELQIKYTTSSRSEHPMCYCV 848
Nucleotide Sequence (345 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
132.1 | 251.6 | 43% | 1.959e-30 | 35% | NC_022072 | |
231.5 | 917.3 | 30% | 2.292e-60 | 56% | NC_016509 | |
144.5 | 304.2 | 30% | 3.696e-34 | 31% | NC_004667 | |
128.4 | 208.8 | 34% | 2.486e-29 | 47% | NC_029783 | |
95.5 | 95.5 | 29% | 2.122e-19 | 42% | NC_009992 |
Alignments
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 8409 to 8726 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 56/106(53%) | 0/106(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDISA 318 R+ A + L +L FV+ S + +Y LMVKAD KPKLD TPL +YVTGQNIVYHD +TA+FS IFT VERLK+V+ + YHGM D ++ + LGDI A Subject 8409 RTPAAYRGLKGKLYDFVFHPSLLLKYTLMVKADVKPKLDDTPLYKYVTGQNIVYHDSCVTALFSCIFTAVVERLKFVVSDNWVFYHGMDIDSLAQRISADLGDIRA 8726
Range 2: 8486 to 8725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 38/80(48%) | 0/80(0%) | Minus/Minus |
Query 78 AEMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL 317 A MSP +L + S+ +PW L +T FNLST VK+ EN AV S T+F PVTY +GV SN G SAFT+S+ Subject 8486 ALMSPRSALIL*ARLSISMPW*NTQLSLTTNFNLSTTAVKIHENNAVTHES**TMF*PVTYLYSGVSSNLGFTSAFTISV 8725
Range 3: 8493 to 8690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 23/66(35%) | 0/66(0%) | Minus/Minus |
Query 85 TKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYH 282 ++ + H MV+ H QP ED K R + ++++N+L+ VL+QR IQL L I L+H Subject 8493 SQAVDIHAMVKHPVIAHHELQPFHHCREDTRKQRCDARIMINNVLTSDVLVQRCVIQLGLHISLHH 8690
Grapevine leafroll-associated virus 1, complete genome
Range 1: 7869 to 8183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.5 bits(499) | 0.0 | 96/105(91%) | 0/105(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS 315 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQY+TGQNIVYHDRAITAMFSHIFTQAVERLKYVL ++VLAYHGMST+DFSREV +RLGD+S Subject 7869 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVS 8183
Range 2: 7871 to 8182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 89/104(86%) | 0/104(0%) | Minus/Minus |
Query 3 EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED 314 + SPSLS TSRLKSSVDIPWYAKT CSTYFNLSTACVKMCENIAVIALSWYT+FCPV YCC GVESNFGLAS T+SL*RVIAD+S T +RKRAHNDCLAIED Subject 7871 DTSPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED 8182
Range 3: 7869 to 8177 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 61/103(59%) | 0/103(0%) | Minus/Minus |
Query 1 VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP 309 +PQS++NL+T+V HT+V *D R+QHIFQPLDRL +DV*KHR YS ++VHN+L VLL R +QLR + L H+L+T H QI+ +R Q SPQ LLSHRRP Subject 7869 IPQSITNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP 8177
Range 4: 7870 to 8175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 57/102(56%) | 0/102(0%) | Plus/Plus |
Query 2 GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG 307 GLLWLSS CGL C IC++* V S W Q +RSW SST + LCT L* RCFHTS +RSRG*NMCC R+S* T VC T V RL DWG Subject 7870 GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWTPRLYSSTLQGKTLCTMIEL*LRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLVIDWG 8175
Range 5: 7871 to 8176 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 57/102(56%) | 0/102(0%) | Plus/Plus |
Query 3 VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG 308 VFYG*AV+VGS A+ + V +D+L A+G R EVG + AV R ++CVP YN DVFTHL+ GREVEICAA ESLS+P YV L SRG TGG Subject 7871 VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPRYVNRRLQSRGW**TGG 8176
Range 6: 7870 to 8175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 58/102(57%) | 0/102(0%) | Minus/Minus |
Query 2 PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT 307 PPV P D*S TY G LRLS AAHISTSRP *RCVKTS L* GTQ TA +PTS L P*A N S T+ + +A+EPT TA*P*KT Subject 7870 PPVYHQPRD*SLLLTYRGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT 8175
Grapevine leafroll-associated virus 3, complete genome
Range 1: 7345 to 7656 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 63/104(61%) | 0/104(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDI 312 R+ A +SL L SFV+ S +T Y LMVKAD KPKLD+TPL +YVTGQNIVYHDR +TA+FS IFT VERLKYV+ R L YHGM T + + +R LGDI Subject 7345 RAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAALRNNLGDI 7656
Range 2: 7353 to 7655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 54/101(53%) | 0/101(0%) | Minus/Minus |
Query 9 MSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAI 311 MSP L L + S+V IPW L +TYF ST VKM E AV LSW TIFCPVTY NGV SN G SAFTMS+* V D TNE K D A+ Subject 7353 MSPKLFLNAAANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTHLSW*TIFCPVTYFDNGVLSNLGFTSAFTMSV*EVNIDG*KTNEPKARLRDL*AL 7655
Range 3: 7345 to 7656 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 32/104(31%) | 0/104(0%) | Minus/Minus |
Query 1 DVPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP 312 DVPQ + S ++ S H +V + ++F L ++ K R Y+P+VV IL YVL Q +QL +C +HE + ++ +R + + L+S R P Subject 7345 DVPQIVPQCSRQLRSVHPVVEEPPFVHYVF*ALYARSKNARKKRSYAPIVVDYILPRYVLRQWRIVQLGFYVCFHHERIRSQHRRMKDKRT*SPLERLVSVRCP 7656
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 8176 to 8472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 55/99(56%) | 0/99(0%) | Plus/Plus |
Query 19 QSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS 315 +SL V+DL+A+TRY LMVKAD KPKLD++ + YV GQNIVY D+ A FSHIF Q ERLKYV + +VL + G + ++F+ EV ERLGDIS Subject 8176 KSLLRECAKNVFDLTALTRYTLMVKADGKPKLDASVMTNYVAGQNIVYSDKVSIARFSHIFQQVAERLKYVCRGKVLFFCGSTIENFASEVEERLGDIS 8472
Range 2: 8205 to 8471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 42/89(47%) | 0/89(0%) | Minus/Minus |
Query 48 EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYT 314 ++SP S TS K S+ P TL TYF S C KMCEN+A+ LS YTIFCP T S+ GL SA TMS+ V A +S T Subject 8205 DISPKRSSTSDAKFSIVEPQKNSTLPLQTYFKRSATC*KMCENLAIDTLSEYTIFCPAT*LVITEASSLGLPSALTMSVYLVKAVRSKT 8471
Plum bark necrosis and stem pitting-associated virus, complete genome
Range 1: 7815 to 8111 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 42/99(42%) | 0/99(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRE 297 R+ + K +L L + S + R+K+MVKAD K KLD T +GQNIVYH R + +FS +F Q ERLK++L+ V +HG S DDF++ +R+ Subject 7815 RTPLGKSALARDLEASPDWRSDLNRFKIMVKADMKSKLDGTAETSLPSGQNIVYHRRNVCLLFSSVFQQLTERLKFLLKPHVKLFHGCSLDDFAQSLRD 8111