Queries
Nucleotide Sequence (459 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
335.1 | 1034.5 | 25% | 2.352e-91 | 44% | NC_007448 | |
339.7 | 1271.1 | 27% | 9.821e-93 | 56% | NC_004724 | |
167.4 | 295.1 | 30% | 7.17e-41 | 27% | NC_008366 | |
123.9 | 265.0 | 30% | 2.879e-40 | 31% | NC_027712 | |
139.4 | 300.3 | 28% | 1.797e-48 | 43% | NC_022978 |
Alignments
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 8104 to 8526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
335.1 bits(725) | 0.0 | 135/141(96%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYIERN+LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLS VY N+IATVKGESEGKSSMRINEINSVDDLVPD+GSTYLCMLQSEKLEISKHF+RKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH Subject 8104 QIHYIERNDLDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 8526
Range 2: 8088 to 8525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.4 bits(479) | 0.0 | 115/146(79%) | 0/146(0%) | Minus/Minus |
Query 20 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTNXXXXXXXXXXXXXXSM**ICQPIPK 457 CL+DLKGSSS*N + TRFTRAYVSP ASCTV+TLSLV PLR KCLLIS+FSD*S+H+ V+P SGTKSSTELISLMR+LL PSLSP TVAI L T LNQA TSHGQR +TLP*TRHC+STNLSRSP +HLS SFLSM**IC+ PK Subject 8088 CLIDLKGSSS*NLSRTRFTRAYVSPCASCTVRTLSLVKPLRMKCLLISNFSD*SIHRYVEPMSGTKSSTELISLMRMLLLPSLSPFTVAIRLPYTVLNQAHTSHGQRYETLP*TRHCKSTNLSRSPYKHLSKSFLSM**ICRLSPK 8525
Range 3: 8083 to 8526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 70/148(47%) | 0/148(0%) | Minus/Minus |
Query 15 VSNGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH 458 V + +RF+LLK + + +HTR+C L L+H *NVKFS N++ ANFQ LKH QI ++G IV +NF++AH AL+F G+ + V+ A PSA IP TT+ ++T+N TLQVHEPI+I ++TL+++I FNVMNL + H Subject 8083 VPDRLKRFILLKLKSHKIHTRICLTLRLMHR*NVKFSQTLANEVLANFQLLRLKHTQIRGTHVGHQIVD*INFVNAHAALTFAFTLHGGDQIAVHCA*PSAHIPWTTV*NITINPTLQVHEPIEIPIQTLVQIIPFNVMNLPAITEDH 8526
Range 4: 8105 to 8509 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.5 bits(272) | 0.0 | 69/135(51%) | 0/135(0%) | Plus/Plus |
Query 37 RFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNL 441 RFITLK M SV I IGSWTCNV F V VV GM ALG*A T * P + + K RA CA KL + TI P IC CF+ ++WKLA+ F + *LNLTF* C R + +H RV* +FRR NL Subject 8105 RFITLKGMIWTSVCMGISIGSWTCNVGFMVMFHTVVHGMCALG*AQCTAI*SPP*RVKAKVRAACALTKLIQSTIWCPTWVPRICVCFNRRSWKLASTSFARV*LNLTF*RCMRRRVRHMRV*ILCDLSFRRMNL 8509
Range 5: 8105 to 8404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 47/100(47%) | 0/100(0%) | Minus/Minus |
Query 37 EQNVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNES 336 E + C*FP EA T+ R NR +*F *CA CS+L +W+S R TKR HP DN Y K DIA PRTY+D +T H FQCNES Subject 8105 E*SAC*FPTSPIEAYTDTWNPCRAPNRRLN*FR*CACCSYLRFHPSRWRSDCRTLCLTKRTHPMDNGMKHYHKPDIASPRTYRDPHTNTCPNHSFQCNES 8404
Range 6: 8444 to 8527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 13/28(46%) | 0/28(0%) | Minus/Minus |
Query 376 CV*WI*KVRPPEISTLLGSHARMFRLEP 459 C * *KV PPE SHA M P Subject 8444 CA**T*KVHPPET*VAQDSHAHMSHPAP 8527
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 8090 to 8512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.7 bits(735) | 0.0 | 137/141(97%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDN+IATVKGESEGKSSMRINEINSVDDLVPD+GSTYLCMLQSEKLEISKHF+RKGL+KLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH Subject 8090 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINEINSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 8512
Range 2: 8149 to 8511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.2 bits(542) | 0.0 | 113/121(93%) | 0/121(0%) | Minus/Minus |
Query 95 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN 457 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSL SPLR KCLLIS+FSD*SMHK*V+P SGTKSSTELISLMR+LLFPSLSPLTVAI LS*TTLNQAQTSHGQR DTLP*TRHCRSTN Subject 8149 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLESPLRMKCLLISNFSD*SMHK*VEPISGTKSSTELISLMRMLLFPSLSPLTVAIMLS*TTLNQAQTSHGQRYDTLP*TRHCRSTN 8511
Range 3: 8069 to 8506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 82/146(56%) | 0/146(0%) | Minus/Minus |
Query 15 NGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH 452 +GF+R VLLKFQ + +H RVC LSLVHG ++KF PF ++M +F LKHAQ+SR +IGD*+VHRV+F++AH SF + G+HV++NNA P AD+P T + HVTV+TTLQV+EP+K+SVK L++ ISFN+MNLST + H Subject 8069 DGFKRLVLLKFQSHQIHARVCLTLSLVHGQDIKFREPFADEMLTDF*LLRLKHAQVSRTHIGD*VVHRVDFVNAHATFSFAFTLNGGDHVVINNA*PGADVPWTAVRHVTVDTTLQVYEPVKVSVKALVEFISFNIMNLSTVSEDH 8506
Range 4: 8085 to 8504 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 84/140(60%) | 0/140(0%) | Plus/Plus |
Query 31 VDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNP 450 VDRFI LKEM+ S FTE L GS TCNVV TVTC V G SA G*ALF T* P + + KE+ CA K TRWT *SP+ LL CACFS ++ K +I KG LNL *PCTRLK +HTR * * *NFRRT+L NP Subject 8085 VDRFIILKEMNSTSAFTETLTGS*TCNVVSTVTCRTAVHGTSAPG*ALFMTT*SPPLRVKAKEKVACALTKSTRWTT*SPIWVLLTCACFSLRS*KSVSISSAKGSLNLMS*PCTRLKVRHTRA*IW*D*NFRRTSLLNP 8504
Range 5: 8085 to 8384 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 59/100(59%) | 0/100(0%) | Minus/Minus |
Query 31 NVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESVN 330 N *F +TEACT+K* +RGL+RPPS*F *CA FL *+W+S KQR T+RR P D+ TRYR+HDIAG RT Q LRK T + HFFQ NESV+ Subject 8085 NAY*FLTSQTEACTSK*NPYRGLSRPPS*FR*CACYFFLRFHP*RWRSCCHKQRLTRRRRPMDSGTTRYRRHDIAGLRTCQGLRKGTCRVHFFQYNESVD 8384
Range 6: 8430 to 8507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/26(69%) | 0/26(0%) | Minus/Minus |
Query 376 *WI*KVRPPEISTLLGSHARMFRLEP 453 *WI*K RPPEIS S ARM LEP Subject 8430 *WI*KARPPEISISPDSRARMSHLEP 8507
Range 7: 8089 to 8205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 28/39(72%) | 0/39(0%) | Plus/Plus |
Query 35 TDSLH*KK*A**VSLRRS**VRGPAMSCLR*RVLSLSVG 151 TDSL+*KK* V LRR * VR PAMSCLR*RV+ LS+G Subject 8089 TDSLY*KK*TRQVPLRRP*QVRRPAMSCLR*RVVPLSMG 8205
Strawberry chlorotic fleck associated virus, complete genome
Range 1: 7776 to 8198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 72/141(51%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYI+RN+L L D++ F+ + RVYG+VS+RCPWDVC WLS+ Y I + +S GKSSMR+ INSV+++ D YL Q EK ++ KH ++ VLTVHEAQG TY VNLVR+KFQE+ PF S H Subject 7776 QIHYIQRNDLGCSLLHDINDFLSDEVRVYGDVSFRCPWDVCEWLSLTYPVHIRSTNEDSVGKSSMRVVCINSVEEVPVDQDHVYLTYTQDEKRDVRKHLLKSVTDCPVVLTVHEAQGATYKYVNLVRVKFQENTPFSSYNH 8198
Range 2: 7856 to 8182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 48/109(44%) | 0/109(0%) | Minus/Minus |
Query 116 KGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*T 442 KG S*NF LT+FT V+P ASCTVKT L +C L S FS K* S SSTE + IL P+LS + I * LN + TSHG +T P T Subject 7856 KGVFS*NFTLTKFTYL*VAPCASCTVKTTGQSVTLFKRCFLTSLFSSWVYVK*T*SWSTGTSSTEFMQTTLILDLPTLSSFVLLI*TG*VRLNHSHTSHGHLNETSPYT 8182
Range 3: 7764 to 8174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 37/137(27%) | 0/137(0%) | Minus/Minus |
Query 24 VLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHP 434 + LKF +*++ V L VH *N + K+F + FF L Q++ + +++R+ +HT L+ T+ + + + AQP IP ++ V++ E I I ++I+ V+NLST P Subject 7764 IFLKFHSH*IYIFVSGTLRFVHC*NNRAICNTLQKVFPHIPFFILGVCQVNMILVYRYLLNRIYADHSHT*LTHTVFIRTSDMNWIG*AQPLTYIPWAPK*NIAVHSDFVRKEVINIMQ*RTAQVIALYVVNLSTVP 8174
Range 1: 6779 to 7105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 50/109(46%) | 0/109(0%) | Plus/Plus |
Query 15 VCLGMG*QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRK 341 + G QIHYIER+EL K Y D+D F++ CRVYG VSYRCPWDVC WLS +Y+ I + ES G++++++ + SVDD+ YL QSEK ++ + F R+ Subject 6779 ILFGDSKQIHYIERDELVKTTYHDIDSFIEPFCRVYGEVSYRCPWDVCEWLSRLYNRKIKSHNQESVGRTTVKVETVESVDDIPHFEDVKYLTYTQSEKSDVHRKFSRE 7105
Range 2: 7115 to 7219 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 25/35(71%) | 0/35(0%) | Plus/Plus |
Query 354 LNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 +NV TVHEAQGET+ RV LVR KFQED PF S+ H Subject 7115 VNVNTVHEAQGETFRRVALVRTKFQEDAPFVSVNH 7219
Range 1: 7273 to 7587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 61/105(58%) | 0/105(0%) | Plus/Plus |
Query 15 VCLGMG*QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKH 329 V G QIHYI+RNE D + DL+RFVD RVYG VSYRCPWDVCAWLS Y IAT S G SSMRI EI SV+D+ YL MLQSEK E+ K+ Subject 7273 VLFGDSKQIHYIDRNEYDVAVLSDLNRFVDDSHRVYGEVSYRCPWDVCAWLSTFYPKTIATTNLTSVGSSSMRIREIESVEDVECSADYVYLTMLQSEKKELKKY 7587
Range 2: 7579 to 7713 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 30/45(67%) | 0/45(0%) | Plus/Plus |
Query 324 KHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 K ++RK + VLTVHEAQGETYARVNLVR KFQ+D+PF+S H Subject 7579 KKYLRKNNSGNTVLTVHEAQGETYARVNLVRTKFQDDDPFRSENH 7713
Range 3: 7272 to 7574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 43/101(43%) | 0/101(0%) | Minus/Minus |
Query 14 SSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTNXXXXXXXXXXXXXXSM**ICQPIPKHT 316 S FSD SM + + SST IS MR+ P+ L VA+ L * N A TS G DT P TR ST RS S S SM**IC P T Subject 7272 SFFSDCSMVRYT*SAEHSTSSTLSISRMRMDDEPTEVRLVVAMVLG*KVDNHAHTSQGHLYDTSPYTRWLSSTKRFRSESTATSYSLRSM**ICLLSPNST 7574
Nucleotide Sequence (353 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
250.0 | 924.3 | 54% | 6.748e-66 | 52% | NC_004724 | |
232.2 | 636.2 | 26% | 1.494e-60 | 36% | NC_007448 | |
110.0 | 166.5 | 18% | 8.889e-24 | 40% | NC_001598 | |
108.7 | 155.1 | 17% | 2.294e-23 | 51% | NC_022978 | |
72.6 | 72.6 | 13% | 1.588e-12 | 55% | NC_006944 |
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 7157 to 7507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.0 bits(542) | 0.0 | 105/117(90%) | 0/117(0%) | Plus/Plus |
Query 2 LVWGGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 LV GTVSDE T+ LSDDEA+EE+ ++EERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNF+RSMAPCNEDAQLYV Subject 7157 LVRKGTVSDEEITNTLSDDEAIEEVPVSEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFERSMAPCNEDAQLYV 7507
Range 2: 7255 to 7506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 76/84(90%) | 0/84(0%) | Minus/Minus |
Query 100 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 351 TYN*ASSL GAIERSKFTIRN*S**A SLLWIS RA+SC+**NSRTALV PPVSLLSSTTIG GNSKLEF+LFKYSLTLTVLGE Subject 7255 TYN*ASSLHGAIERSKFTIRN*S**AHSLLWISNRASSCI**NSRTALVNPPVSLLSSTTIGFGNSKLEFNLFKYSLTLTVLGE 7506
Range 3: 7157 to 7507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 67/117(57%) | 0/117(0%) | Minus/Minus |
Query 2 DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPNQ 352 +VQLS+LIT GHR +IH+PQLI+VSA+FA+D + S+ LH+++F +RVG SSLLIV+HH+R R+FE V SIQ+ HP+R *+++LFGD F+RFI+R*SVG I +SP NQ Subject 7157 NVQLSILITWGHRTFEIHDPQLIVVSAQFAVDFK*SELLHIVEFAYRVG*PSSLLIVVHHDRLREFEA*VQSIQIFTHPYRFG*VVALFGDWNFFNRFIIR*SVGDFLIGNSPLTNQ 7507
Range 4: 7158 to 7505 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 67/116(58%) | 0/116(0%) | Plus/Plus |
Query 3 WFGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCT 350 WF GL M+ +PTLYL MKR K F+SPKS H +R*G* + *ID*T+ SN +R WW TIRRLE *PTR N C++ L +S AN ALT ISCG *I WP VMR L+CT Subject 7158 WFVRGLFPMRKSPTLYLMMKRLKKFQSPKSATTHPKR*G*VNI*ID*TQASNSRSRSWWTTIRRLEG*PTRYANSTICRSSLYLKSTANCALTTISCGS*ISNVLWPHVMRMLSCT 7505
Range 5: 7200 to 7505 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 53/102(52%) | 0/102(0%) | Minus/Minus |
Query 45 RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIK 350 RT E PHY GP + +NS+SATD SKR VC G + E A ++I PRW LQSPYC PP+S IR+ S +YS+ SP P V+ ALR + L+ LH QIK Subject 7200 RTTEHPHYMGP*NVRNSRSATDRSKRTVCCGFQIERAPAYSRIRVPRWLTLQSPYCRPPRSASGIRSLSSIYSNIHSPLPFWVSRRALRRLELLQSLHHQIK 7505
Range 6: 7267 to 7506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 45/80(56%) | 0/80(0%) | Plus/Plus |
Query 112 GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*SVADCEF*SLDGPL**GRSIVR 351 G+GE + E* +L+ RI D GG Q*GDWR +QRG ILL+A S+ +P QT+RLL SVAD EF + GP+**G S+VR Subject 7267 GKGE*IFE*IELKLRIPEADRGGRQ*GDWRVNQRGTRILLYAGARSI*NPQQTVRLLRSVADREFRTFYGPM**GCSVVR 7506
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 7213 to 7521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.2 bits(503) | 0.0 | 94/103(91%) | 0/103(0%) | Plus/Plus |
Query 44 ALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 ALSDDEAVEE+S+ EERDDSPKTVR+SEYLNRLNSSFEFPKPI+VDDNK+TGGLTNAVREFYYMQELALFEIHSKLC YYDQLRIVNFDRS+APC+EDAQLYV Subject 7213 ALSDDEAVEEISVAEERDDSPKTVRMSEYLNRLNSSFEFPKPIIVDDNKDTGGLTNAVREFYYMQELALFEIHSKLCTYYDQLRIVNFDRSVAPCSEDAQLYV 7521
Range 2: 7269 to 7520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 64/84(76%) | 0/84(0%) | Minus/Minus |
Query 100 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 351 TY+*ASSL GA +RSKFT+R+ S** SLL ISKRA+SC+**NS TA V+PPVSLLSST IG GNSKLEF+LF+YSL LTVLGE Subject 7269 TYS*ASSLHGATDRSKFTMRSWS**VHSLL*ISKRASSCI**NSLTAFVRPPVSLLSSTIIGFGNSKLEFNLFRYSLILTVLGE 7520
Range 3: 7213 to 7518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 51/102(50%) | 0/102(0%) | Minus/Minus |
Query 44 VQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*S 349 VQLS+L H +I++H QL+IV + A++ E+S+FLH+IK H V T +LIV+++NR RK E +* +QV AHP RLR I+SLF + F FIVR*S Subject 7213 VQLSILAARCHGSIEVHYAQLVIVGTQLAVNFEKSKFLHIIKLPHSVR*TPGILIVVYNNRLRKLEA*I*PVQVFAHPDRLRRIVSLFSNGDFFHGFIVR*S 7518
Range 4: 7172 to 7519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 49/116(42%) | 0/116(0%) | Plus/Plus |
Query 3 WFGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCT 350 W +G L+ LYLTMK K KSE I LRR G*A+T* * + S+F + L TIR V* T +FI C+N L S+ A+ TM +C * I W R L+CT Subject 7172 WREKGRLLVTK*QLLYLTMKPWKKSPLLKSETIRLRRSG*ANT*TG*IQASSFRSLLL*TTIRIPGV*RTL*GSFIICRNLLFSKFTASCVPTMTNCA**TSIDPWHRAARMLSCT 7519
Range 5: 7352 to 7519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 20/56(36%) | 0/56(0%) | Minus/Minus |
Query 183 RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYC 350 RT E P P D++S A HS+ C R+E + A NK + R + + PYC Subject 7352 RTAEHPRCTVPRIDRSSLCAVGHSRYTACCEFRKEQVPAYNKTPSQRSLDPRYPYC 7519
Range 1: 6378 to 6611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.0 bits(235) | 0.0 | 43/78(55%) | 0/78(0%) | Plus/Plus |
Query 119 VSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 VSE+LN +N+S E P+PI+VD + E+ LTN+VREFYY+QELALFE+ KL YYDQL++ NF+R C++D ++V Subject 6378 VSEFLNAINTSNEQPRPIIVDHSPESRALTNSVREFYYLQELALFELSCKLREYYDQLKVANFNRQECLCDKDEDMFV 6611
Range 2: 6378 to 6572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 26/65(40%) | 0/65(0%) | Minus/Minus |
Query 119 AIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAH 313 ++KI N QLI++ KFA L++S+FL VI+F H VGQ + V++ R R + S++ LA+ Subject 6378 SVKIRNLQLIVILTKFATQLKKSEFLEVIEFPHGVGQRARFGRVVNDYRPRLLIASINSVEKLAY 6572
Range 1: 6493 to 6726 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(232) | 0.0 | 44/78(56%) | 0/78(0%) | Plus/Plus |
Query 119 VSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 VSE+LN +N+S E PKP++VD +TGGLTN+VREFYY+ ELAL E+ +KL YYDQL +V F R + C++D L+V Subject 6493 VSEFLNAINTSNEQPKPVIVDYCPDTGGLTNSVREFYYLNELALSELSNKLREYYDQLNVVGFKRKESLCDKDEDLFV 6726
Range 2: 6492 to 6674 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 31/61(51%) | 0/61(0%) | Minus/Minus |
Query 118 TIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLT 300 T N S* ++SLL S +A+S **NS T LVKPPVS ST G G S L + SLT Subject 6492 TTFNWS*YSRSLLLNSDKASSLR**NSLTELVKPPVSGQ*STMTGFGCSLLVLMALRNSLT 6674
Nucleotide Sequence (381 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
272.8 | 951.7 | 33% | 1.026e-72 | 51% | NC_004724 | |
267.7 | 783.7 | 43% | 3.334e-71 | 39% | NC_007448 | |
162.8 | 276.3 | 33% | 1.288e-39 | 33% | NC_022978 | |
160.1 | 223.0 | 51% | 8.66e-39 | 46% | NC_001598 | |
112.4 | 112.4 | 33% | 1.917e-24 | 39% | NC_027712 |
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 13226 to 13603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(589) | 0.0 | 112/126(89%) | 0/126(0%) | Plus/Plus |
Query 2 ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 +LRFVESYTADPAIDALEE+LDAIMK NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP SVGGFEINMKNVE FFDK+QRE+P+VSLRRQFNGARA+EAFKVFK GNISFKPISRLNIP Subject 13226 VLRFVESYTADPAIDALEEKLDAIMKKSNPHLSTAQLWVGFFCYYGEFRTAQRRVVQRPGVYKTPNSVGGFEINMKNVEEFFDKIQREVPNVSLRRQFNGARAHEAFKVFKKGNISFKPISRLNIP 13603
Range 2: 13309 to 13605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 77/99(78%) | 0/99(0%) | Minus/Minus |
Query 85 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 381 LGMFNR+MGLKL+FP LNTL AS ALAPLNCRR++T G SR LSKN STFF+ ISKPPT+ GVLYT GL TTR CAVRNSP**QK PTH+CAV+R*GL Subject 13309 LGMFNRDMGLKLMFPFLNTLNASCALAPLNCRRRDTFGTSRWILSKNSSTFFILISKPPTELGVLYTPGLCTTRRCAVRNSP**QKNPTHSCAVDR*GL 13605
Range 3: 13226 to 13600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 70/125(56%) | 0/125(0%) | Minus/Minus |
Query 2 YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD 376 YV* R GF+AD+ FKYFE L+ S +VEL P*R+ LSL LIKK F++ H+ +T++R+G I+ RP +H LC AKF V+ E++YPQLRRR MRI LHYS+QF F R+NS +S V F +SQD Subject 13226 YV*PRYGFEADVSLFKYFERLVRSGSVELSP*RHVWHLSLDLIKKLFDVFHINLETSDRIGRLIHTRPLHHPTLCGAKFAVIAEESYPQLRRR*MRITLLHYSVQFLFQRVNSRISSV*FDKSQD 13600
Range 4: 13228 to 13605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 65/126(52%) | 0/126(0%) | Plus/Plus |
Query 4 PEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK 381 PEI I+H * Y* V R IG YNE SSS+ GA VGR LLLR ISH TTS G++AG +*+ + G F + +E+ ++F** TR +R TA IQR S G QSI*+ ++QL TH+S+KHT+ Subject 13228 PEICRIIHC*SGY*RVGREIGRYNEEE*SSSIYGATVGRILLLLRRISHRTTSGGAKAGCV*DAQFGRRFRD*YEKRRRVF**DPTRGAKRVSTATIQRSQSARGVQSI*KGKHQLQTHISVKHTE 13605
Range 5: 13227 to 13601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 64/125(51%) | 0/125(0%) | Minus/Minus |
Query 3 VCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRISG 377 VCL E WV*S* *IL* P L R*I AV+ R LV +YQK + S +N +P Y PA P DVV+CEI R++R+ LPT AP DED +SL* PI L T Q* Q C I +ISG Subject 13227 VCLTEIWV*S*CFPF*IL*TPRALWLR*IVAVETRLAPLVGSYQKTLRRFSY*SRNLRPNWASYTHPAFAPPDVVRCEIRRNSRRILPTVAP*IDEDYSSSL*RPISLPTRQ*PDQQCMIRQISG 13601
Range 6: 13227 to 13604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 65/126(52%) | 0/126(0%) | Plus/Plus |
Query 3 S*DSWNRTRLTQLLMR*KKNWML*XXXXXXXXXXXXCG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ 380 S*D N T L +LL R K+NW L** ILI RR+CG* S T NFA HN+ W +GR I+ P R V + *+ K FLI NE + LYG NST E R SKYLK SA NP L *TY+ Subject 13227 S*DLSNHTLLIRLLTRWKRNWTL**RRVILIYLRRNCG*DSSAITANFAPHNVGWCKGRVCIRRPIRSEVSRLI*KTSKSFLIRSNERCQTCLYGDNSTEPERTRRSKYLKRETSASNPYLG*TYR 13604
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 13218 to 13595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
267.7 bits(578) | 0.0 | 107/126(85%) | 0/126(0%) | Plus/Plus |
Query 2 ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 ILR+VESYT+DPAIDALE++L+AI+K NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP+SVGGFEINMK+VE+FFDKLQRELP+VSLRRQFNGARA+EAFK+FK GNISFKPISRLN+P Subject 13218 ILRYVESYTSDPAIDALEDKLEAILKTSNPHLSTAQLWVGFFCYYGEFRTAQSRVVQRPGVYKTPDSVGGFEINMKDVEKFFDKLQRELPNVSLRRQFNGARAHEAFKIFKNGNISFKPISRLNVP 13595
Range 2: 13301 to 13597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 77/99(78%) | 0/99(0%) | Minus/Minus |
Query 85 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 381 LG F R+MGLKL+FP LN LKAS ALAPLN RRK+TLGNS *SLSKN ST FMFIS PPT+SGVLYT GL TT AVRNSP**QK PTH+CAV+R*GL Subject 13301 LGTFKRDMGLKLMFPFLNILKASCALAPLN*RRKDTLGNSL*SLSKNFSTSFMFISNPPTESGVLYTPGLCTTLL*AVRNSP**QKNPTHSCAVDR*GL 13597
Range 3: 13224 to 13592 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 52/123(42%) | 0/123(0%) | Minus/Minus |
Query 8 YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHES 376 ++ +R GF+ + KYFESL+ S +V+L R SLK I++ +I HVYF++T+ + CFI+ P +++ L AKF +VT+++ P LR R MRI Y QF F R++SW+ RVRF+ S Subject 13224 HIQTRYGFETYVSVLKYFESLMRSGSVKLTSQRYIGQFSLKFIEELLDIFHVYFESTH*VWCFIHTWPLHYSTLSRAKFAIVTKESNP*LRCR*MRIASFQYRFQFVFQRVDSWI*RVRFYVS 13592
Range 4: 13217 to 13588 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 50/124(40%) | 0/124(0%) | Plus/Plus |
Query 1 HPEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIK 372 H +IR I+H SY V R+ G E QSSS+D A +G LLL ISH + ++A +*NTR+ W NKHE C ++ * S R+ + F ++ R S *GFQ+I* R+++ TH++ + Subject 13217 HFKIRRILHVRSSYRRVGRQTGSDTEN*QSSSIDSATMGWILLLLWRISHGSK*SSAKARCV*NTRLSGWIRNKHERCREVLR*TSERIAQCIFATSV*RSQSA*GFQNI*ERKHKFQTHIAFE 13588
Range 5: 13402 to 13575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 26/58(45%) | 0/58(0%) | Minus/Minus |
Query 186 WV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFY 359 WV*+ R *I *KPH L R* K L E Y++ +H SCLF+ H + VFY Subject 13402 WV*NLCFRS*IF*KPHALWLR*TDVAKIHWAILSEVYRRTSRHLSCLFRIHPLSLVFY 13575
Range 6: 13225 to 13365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 22/47(47%) | 0/47(0%) | Minus/Minus |
Query 9 CEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRI 149 CEI SN++ P A S DEDC S+ P+ L T +*L C I RI Subject 13225 CEIRHSNKRIQPIVALSIDEDC*FSVSLPVCLPTRR*LDLTCKILRI 13365
Range 7: 13345 to 13575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 30/77(39%) | 0/77(0%) | Plus/Plus |
Query 129 VTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNP 359 VT NFA + +G+ IKH ++ V K*T*+M + I+F E+ +L + T E MRLSKYL+ NP Subject 13345 VTMANFARLKVE*CKGQVCIKHQTQWVDSK*T*KMSRSSSINFRENCPMYLCDVSLTEPERMRLSKYLRTET*VSNP 13575
Range 1: 12378 to 12752 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 64/125(51%) | 0/125(0%) | Plus/Plus |
Query 5 LRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 L +ESY D + ++L ++D++++ DNP L AQ W+GF CYYGE+RTA+ R R DVYK P+ VG + INM NVE FF +LQ+ +PS+S+RR+F G+ A EAF +FK I F PI+RLN+P Subject 12378 LGLLESYFEDDSNESLRAKIDSLLQQDNPELGLAQRWIGFHCYYGEYRTAKTRKEKRADVYKLPKIVGDYTINMTNVEEFFSELQKNMPSISVRRRFCGSLATEAFSIFKKFGIGFPPITRLNVP 12752
Range 2: 12458 to 12751 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 45/98(46%) | 0/98(0%) | Minus/Minus |
Query 85 GMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 378 G FN +G K I L LKAS A P N RR E G + KN ST MFI PT G LYTS L + AV SP**Q P H A GL Subject 12458 GTFNLVIGGKPIPNFLKMLKASVAKEPQNLRRTEMEGMFFCNSEKNSSTLVMFIV*SPTIFGSLYTSALFSFLVFAVLYSP**Q*NPIHRWAKPSSGL 12751
Range 3: 12381 to 12749 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 41/123(33%) | 0/123(0%) | Minus/Minus |
Query 8 YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHES 376 +V* R+ K D K ESL S + R+ R + L+ +K F++ HVY +N L F+++ P L + +VVT K YP L E +V L I F * V VRF +S Subject 12381 HV*PRNWRKTDSKLLKNAESLGSQRTAKPTTHRDGRHVFLQF*EKLFHVGHVYRIISNDLRKFVHICPFFFPSLRGSVLSVVTVKPYPPLG*TEFWVVLLQE*INFRS*GFVRVVFEVRF*KS 12749
Range 1: 12273 to 12647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 63/125(50%) | 0/125(0%) | Plus/Plus |
Query 5 LRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 LR++ESY D + + ++ ++D+++ DNP L AQ WVGF CYYG FRTAQ R V R YK P ++G F INM VE FF++LQ+++PS+S+RR+F G+ ++EAF VFK + F PI+RLN+P Subject 12273 LRYLESYFEDDSNELIKVKVDSLLTRDNPELKLAQRWVGFHCYYGVFRTAQTRKVKRDAEYKLPPALGEFVINMSGVEEFFEELQKKMPSISVRRRFCGSLSHEAFSVFKRFGVGFPPITRLNVP 12647
Range 2: 12380 to 12646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 41/89(46%) | 0/89(0%) | Minus/Minus |
Query 112 GMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTH 378 G FN +G K L T KAS* P N RR E G S SKN ST +FI+ P G LY++ L T AV +P**Q KPTH Subject 12380 GTFNLVIGGKPTPNLLKTEKAS*DKLPQNLRRTEMEGIFFCSSSKNSSTPLIFITNSPRAGGSLYSASLFTFLVWAVLKTP**QWKPTH 12646
Range 1: 12034 to 12405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 48/124(39%) | 0/124(0%) | Plus/Plus |
Query 8 RFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 +++E+ D + A+ E + +++ NP LW+ CYYG +RTA R VPRP +YK P + +N VE FFDKLQ+ P ++RRQF G EA VFK + F IS +N+P Subject 12034 KYLENVLMDSDVVAMREYISSLLVKANPSSDLGMLWMALHCYYGTYRTAVTRKVPRPLLYKPPYQLTTETVNFTLVESFFDKLQKGRPGTNVRRQFFGKLGTEAIAVFKKLRVGFPKISAMNVP 12405
Nucleotide Sequence (540 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
159.1 | 303.8 | 26% | 2.745e-38 | 27% | NC_013007 | |
228.3 | 1459.8 | 33% | 3.13e-91 | 51% | NC_004724 | |
206.8 | 878.1 | 51% | 1.736e-79 | 35% | NC_007448 | |
150.4 | 220.7 | 17% | 1.146e-35 | 46% | NC_022978 | |
149.5 | 264.4 | 16% | 2.163e-35 | 33% | NC_001598 |
Alignments
Range 1: 10064 to 10351 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 61/96(64%) | 0/96(0%) | Plus/Plus |
Query 253 MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL 540 MVVFGLDFGTTFST+ V K+G++Y KQ NS YIPTY++L ET + +GY+AESLM++ K+KGSFFRDLKRWVGC+ NF +Y LKP Y V L Subject 10064 MVVFGLDFGTTFSTISVLKEGEIYLRKQQNSPYIPTYIFLSEETAEVAYGYDAESLMYSRKIKGSFFRDLKRWVGCNEKNFEKYMSLLKPSYKVEL 10351
Range 2: 10015 to 10344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 51/110(46%) | 0/110(0%) | Minus/Minus |
Query 204 TE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGR 533 T * GFK Y K PT F+S K PF F L I DSAS P VS R VG+Y E C +* PS T+ VEKVVPKS PKTTI+ G*++ + D R Subject 10015 TL*LGFKSDIYFSKFFSLHPTHLFRSRKKLPFIFLLYIKDSASYP*ATSAVSSERKI*VGMYGEFCCFRK*ISPSFKTEMVEKVVPKSNPKTTIAK*IFGG*QSDSHDFR 10344
Range 3: 10064 to 10339 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 25/92(27%) | 0/92(0%) | Minus/Minus |
Query 253 VARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNH 528 + Q + K+ + +P F + ++ FYF VHQ F I +H GL + + + ++L +NF+ + + KSR EV* +++H Subject 10064 ITGLQE*HILLKILLVAPYPPFQITEKTTFYFSAVHQGFSVIPVSHFSGLFREKNIGGYVW*ILLFSQINFSFFQNRNGRKSRTEV*PKDHH 10339
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 10537 to 10836 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 89/100(89%) | 0/100(0%) | Plus/Plus |
Query 238 CDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVR 537 C + EMVVFGLDFGTTFSTVCVYKDGKVYS+KQNNSAYIPTYLYLFSETN+MVFGYEAESLMHN+KV+GSFFRDLKRWVGCDSSNF +YFDRLKP Y+VR Subject 10537 CVICEMVVFGLDFGTTFSTVCVYKDGKVYSFKQNNSAYIPTYLYLFSETNHMVFGYEAESLMHNAKVRGSFFRDLKRWVGCDSSNFSDYFDRLKPHYAVR 10836
Range 2: 10346 to 10543 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 52/66(79%) | 0/66(0%) | Plus/Plus |
Query 45 HCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV* 242 H V C +MDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRR+ HE + VRG GFSTVV* Subject 10346 HDVCHCIDIMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRNVHETPISAVRGQGFSTVV* 10543
Range 3: 10314 to 10370 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/19(58%) | 0/19(0%) | Plus/Plus |
Query 11 YPQLWCNCMTYTLCVIV*I 67 +P+LW + +TYT+CV V*I Subject 10314 FPRLWDDHVTYTMCVTV*I 10370
Range 4: 10548 to 10835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 84/96(88%) | 0/96(0%) | Minus/Minus |
Query 249 RTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS 536 RT * GF+RSK S KLLESQPTQRFKSLK EP TF LCISDSAS*PKTM LVSE R*RYVG+YAELFCL E*TLPSLYTQTVEKVVPKSKPKTTIS Subject 10548 RTA*CGFRRSK*SLKLLESQPTQRFKSLKKEPLTFALCISDSAS*PKTM*LVSEKR*RYVGMYAELFCLNE*TLPSLYTQTVEKVVPKSKPKTTIS 10835
Range 5: 10352 to 10546 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 40/65(62%) | 0/65(0%) | Minus/Minus |
Query 51 RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*H 245 +SHN ET TTDGR + V SA+RF+HAND+Q++DE Y KN LVEQ+QTL+L NLVH I+T H Subject 10352 KSHNSRETLTTDGRYWSFVYVSAERFNHANDEQNEDECYCKNRLVEQIQTLELQNLVHNIYTVTH 10546
Range 6: 10316 to 10372 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 11/19(58%) | 0/19(0%) | Minus/Minus |
Query 13 DIYTMTHNVYVMQLHHSCG 69 +IYT+TH VYV HS G Subject 10316 NIYTVTHIVYVT*SSHSRG 10372
Range 7: 10537 to 10839 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 56/101(55%) | 0/101(0%) | Minus/Minus |
Query 238 QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKIT 540 + N + QAI+V +KV + THP F*VPKERA + ++HQ*FGFIT+NHV+ E+VEV RN+R ++L *VN TI +HAD KSR E+*T+NNHF T Subject 10537 RANRIVWLQAIKVVTKVAGVATHPAF*VPKERASHLCIMHQ*FGFITKNHVISFGEKVEVCRNVRRIVLFE*VNLTIFIHADRRKSRTEI*TKNNHFANHT 10839
Range 8: 10344 to 10547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 41/68(60%) | 0/68(0%) | Minus/Minus |
Query 43 KITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAR*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNV 246 +ITQ+ RN HGR + RVRFC KI*SRE* A *RR L QK G*A T+T+T +PGP* +Y+ TH V Subject 10344 QITQQSRNPDHGRPILEFRVRFCGKI*SRE**AE*RRMLLQKPPG*ADTDTRTAEPGP*YLYSDTHRV 10547
Range 9: 10544 to 10834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 56/97(58%) | 0/97(0%) | Plus/Plus |
Query 245 FTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPF 535 F KWLF V* S RLF+ SAC +MV+FTH +K R FR TST S + TWF VMKPNH*C ++*+A SLGT*N GWV TL T IA*+ F Subject 10544 FAKWLFLV*ISVRLFRRSACIKMVRFTHSNKTILRTFRHTSTFSPKLITWFLVMKPNH*CIMQR*EALSLGT*NAGWVATPATLVTTLIA*SHTMRF 10834
Range 10: 10342 to 10569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 39/76(51%) | 0/76(0%) | Plus/Plus |
Query 41 YTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYLADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV 268 +T CV + YGPG V V V AQP FC+N RL+ A HSRD IF QKRTR RPW FL+ CVI +F + Subject 10342 HTRCVSLYRYYGPGSAVRVSVSAQPGGFCNNIRLHSAHHSRD*IFPQKRTRNSNIGRPWSGFLDCCVICEMVVFGL 10569
Range 11: 10527 to 10724 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 40/66(61%) | 0/66(0%) | Plus/Plus |
Query 228 STVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDA 425 S ++ LRNGCF FR R+DFF+ LRV W* LLI K V+SD+PLP L + HGF L*SRITDA Subject 10527 SRLLCDLRNGCFWFRFRYDFFDGLRV*RW*GLLIQTKQFCVHSDIPLPFLRN*SHGFWL*SRITDA 10724
Range 12: 10335 to 10418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 16/28(57%) | 0/28(0%) | Plus/Plus |
Query 34 HDVHIVCHRVNILWTRFYSLSVCTCSTK 117 H + +C V ILWTRF S SVC CST+ Subject 10335 HVTYTMCVTV*ILWTRFCSSSVCICSTR 10418
Range 13: 10482 to 10547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 13/22(59%) | 0/22(0%) | Plus/Plus |
Query 181 EAHTRFRTRPSVVEVSQPLCDL 246 E +T+ + RPSVV VS+ LCDL Subject 10482 ETYTKLQYRPSVVRVSRLLCDL 10547
Range 14: 10342 to 10590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 46/83(55%) | 0/83(0%) | Minus/Minus |
Query 41 KKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCV 289 +KS + K +HTTVEKP PRT SC LRKDLITRM+S++KT V+AKTAWLS+Y+HSNC+TWSI + T C+ Subject 10342 RKSRTEI*TKNNHFANHTTVEKP*PRTADIGVSCTFLRKDLITRMMSRMKTNVIAKTAWLSRYRHSNCRTWSIISIQ*HTSCM 10590
Range 15: 10526 to 10723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 41/66(62%) | 0/66(0%) | Minus/Minus |
Query 227 ASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVE 424 ASVIRLHN+KPC +R GRG SE T++ F MSK YH TRR KKS R+LN+KQPFRK H + E Subject 10526 ASVIRLHNQKPCD*FRRKGRGMSECTQNCFV*MSKPYHLYTRRPSKKSYRNLNQKQPFRKSHNSRE 10723
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 10544 to 10831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.8 bits(445) | 0.0 | 81/96(84%) | 0/96(0%) | Plus/Plus |
Query 253 MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL 540 MVVFGLDFGTTFSTVCVYKDG+V+S+KQNNSAYIPTYLYLFS++N+M FGYEAESLM N KV+GSF+RDLKRWVGCDSSN EY DRLKP YSVRL Subject 10544 MVVFGLDFGTTFSTVCVYKDGRVFSFKQNNSAYIPTYLYLFSDSNHMTFGYEAESLMSNLKVRGSFYRDLKRWVGCDSSNLDEYLDRLKPHYSVRL 10831
Range 2: 10331 to 10531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 46/67(69%) | 0/67(0%) | Plus/Plus |
Query 45 HCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV*S 245 H V ++M+QVLQFECL+LLN AVFA+TF+FILL+IRVIKSFR+ +HE N VR GGFSTVV*S Subject 10331 HLVCHRAFIMNQVLQFECLFLLNLAVFAVTFIFILLVIRVIKSFRQKSHEAPNPVVRSGGFSTVV*S 10531
Range 3: 10543 to 10830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 74/96(77%) | 0/96(0%) | Minus/Minus |
Query 252 RRTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTI 539 +RTE* GFKRS+YS +LLESQPTQRFKSL NEP TF+L I+DSAS*P M L SE R*R VG+YAELFCL E T PSLYT TVE VVPKSKPKTTI Subject 10543 KRTE**GFKRSRYSSRLLESQPTQRFKSL*NEPLTFKLLINDSAS*PNVMWLESEKR*R*VGMYAELFCLNEKTRPSLYTHTVENVVPKSKPKTTI 10830
Range 4: 10327 to 10530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 38/68(56%) | 0/68(0%) | Minus/Minus |
Query 41 DHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCV 244 D+TTVEKPP RT F S RKDLITRM ++K KV AKTA S+ KHSNCKT I T+C+ Subject 10327 DYTTVEKPPLRTTGFGAS*LFWRKDLITRMTRRMKMKVTAKTARFSRNKHSNCKT*FIINAR*HTRCM 10530
Range 5: 10544 to 10831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 44/96(46%) | 0/96(0%) | Minus/Minus |
Query 253 QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNH 540 Q V RF IEVF +VT I THPTF + +R F+V HQ F +T+ HVV + +++EV ++R +ILL * N +IL+HA + AE+ TEN+H Subject 10544 QAYRVVRF*TIEVFVEVTRIATHPTFQISIKRTPNFQVTHQRFSLVTKRHVVRIGKEIEVSWDVRRIILLE*KNPSILIHAHRRECGAEIQTENHH 10831
Range 6: 10358 to 10525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 24/56(43%) | 0/56(0%) | Minus/Minus |
Query 72 HNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVH 239 H+G*+T TD +R V AKR +H +D+++++ES+ KN ++Q QT +L NL+H Subject 10358 HHG*KTPATDNGIRRFVTLLAKRLNHPDDEKNENESHSKNREIQQKQTFELQNLIH 10525
Range 7: 10545 to 10826 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 41/94(44%) | 0/94(0%) | Plus/Plus |
Query 254 WLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPF 535 W FSV SA AC RM F H S+I R + TS TT V + N * T K R + *NVGWV I+VT NTSI *N T + Subject 10545 WWFSVWISAPHSLRCACIRMDGFFHSSRIIRRTSQLTSISFPILTT*RLVTRLNR**VT*KLGVRFIEI*NVGWVAIRVTSTNTSIV*NLTTRY 10826
Range 8: 10319 to 10360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 7/14(50%) | 0/14(0%) | Plus/Plus |
Query 31 LHDVHIVCHRVNIL 72 + D+H+VCHR I+ Subject 10319 VRDIHLVCHRAFIM 10360
Range 9: 10503 to 10715 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 25/71(35%) | 0/71(0%) | Minus/Minus |
Query 212 ASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVEKPPPR 424 +S I+ N+ C +++ RG T +Y A M K HP TR + CR+ NRK P+ + TT PR Subject 10503 SSTIQPRNQTSCG*NRKRDRGKLGCTPNYSA*MKKPVHPYTRTP*RMWCRNPNRKPPYARLLTTPRLKNPR 10715
Range 1: 9713 to 10000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 56/96(58%) | 0/96(0%) | Plus/Plus |
Query 253 MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL 540 MVVFGLDFGTTFS+VC Y ++Y YKQ +SAYIPTYLYL +++ + FGY+AE L ++ V+G F+RDLKRWVGCD N+ EY +L P Y +L Subject 9713 MVVFGLDFGTTFSSVCAYVGNELYLYKQRDSAYIPTYLYLHADSQEVAFGYDAEVLSNDPSVRGGFYRDLKRWVGCDEENYEEYLTKLSPPYKTQL 10000
Range 2: 9697 to 9966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 41/90(46%) | 0/90(0%) | Minus/Minus |
Query 237 KYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSH 506 +YS SQPTQRF+S P T SAS PK S R +YVG+ A CLY+ + QT+EKVVPKSKP TTI R + Subject 9697 RYSS*FSSSQPTQRFRSR*KPPRTEGSLDKTSASYPKATSCESACRYKYVGM*ALSLCLYKYSSFPT*AQTLEKVVPKSKPNTTIIQRQY 9966
Range 1: 9608 to 9895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 54/96(56%) | 0/96(0%) | Plus/Plus |
Query 253 MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL 540 MVVFGLDFGTTFS+VC Y ++Y +KQ +SAYIPTY++L S+T + FGY+AE L ++ V+G F+RDLKRW+GCD N+ +Y ++LKP Y L Subject 9608 MVVFGLDFGTTFSSVCAYVGEELYLFKQRDSAYIPTYVFLHSDTQEVAFGYDAEVLSNDLSVRGGFYRDLKRWIGCDEENYRDYLEKLKPHYKTEL 9895
Range 2: 9596 to 9883 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 32/96(33%) | 0/96(0%) | Minus/Minus |
Query 241 VARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKI 528 V R + +V S V + ++P F*V E + ++V + G ++E+H + +R V R + + LL + F + +*KS AEV*TENNH + Subject 9596 VVRLKFFQVVSIVFFVASYPAF*VAIETSTN*KIVRKNLGVVSESHFLSIRM*KYVSRYVSTISLLEQIQFFSNIGTHT*KSGAEV*TENNHHTTV 9883
Range 3: 9604 to 9837 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 36/78(46%) | 0/78(0%) | Minus/Minus |
Query 249 SQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS 482 S P QRFKS P T SAS PK VSE + VG+ A CL + T+EKVVPKSKPKTTI+ Subject 9604 SHPIQRFKSR*KPPRTERSLERTSASYPKATS*VSECKNT*VGM*ALSLCLNRYSSSPT*AHTLEKVVPKSKPKTTIT 9837
Nucleotide Sequence (662 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
410.7 | 1411.6 | 29% | 6.693e-114 | 40% | NC_004724 | |
363.1 | 1146.4 | 43% | 1.482e-99 | 35% | NC_007448 | |
73.0 | 138.7 | 31% | 3.043e-12 | 28% | NC_001598 | |
81.7 | 112.1 | 27% | 2.867e-18 | 31% | NC_013007 | |
77.6 | 138.2 | 27% | 5.225e-26 | 28% | NC_022978 |
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 2264 to 2860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
410.7 bits(890) | 0.0 | 170/199(85%) | 0/199(0%) | Minus/Plus |
Query 43 GKFLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR 639 G+ LR D +PCSRDYAAMLSFAAGGRFPLV MTR+KYKNGYCYLAHCRYASAF+LKGFHPA FDIGANPTAA+LRSRMVS+LG R LSLNLYGS TSRG FHCDYDA Y KDLRF+SAI+AGKEE GEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVI+VP ++S+ TQ+ L R Subject 2264 GRLLRRDVIPCSRDYAAMLSFAAGGRFPLVLMTRDKYKNGYCYLAHCRYASAFLLKGFHPAVFDIGANPTAAKLRSRMVSVLGDRSLSLNLYGSFTSRGIFHCDYDAAYVKDLRFMSAIVAGKEEMGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIRVPFYMSEVTQNSLTR 2860
Range 2: 2263 to 2820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.1 bits(712) | 0.0 | 151/186(81%) | 0/186(0%) | Plus/Minus |
Query 83 GTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RKNFP 640 GTL+TGLSFF+L TSFLKSI+SFS+LNFN+ESLLPYNLS*TASIVFCFIAGV+SEATTSP+SSLPA IAD NLKSF+* AS*SQ K PR+V++PYKFKLR L+PR ETMRDLS AAVGLAP+SK AG KPF KALAYLQ AK*Q*PFLYL LVIKT GKRPPAA DNIAA*SLEQG S RK+ P Subject 2263 GTLITGLSFFRL*TSFLKSIRSFSMLNFNNESLLPYNLS*TASIVFCFIAGVISEATTSPISSLPATIADMNLKSFT*AAS*SQ*KIPRDVKDPYKFKLRLLSPRTETMRDLSFAAVGLAPMSKTAG*KPFRRKALAYLQ*AK*Q*PFLYLSLVIKTNGKRPPAANDNIAA*SLEQGMTSRRKSLP 2820
Range 3: 2333 to 2854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 86/174(49%) | 0/174(0%) | Plus/Minus |
Query 49 QNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETTA 570 Q VL F V + N+GS+ LQ L+VIL+IY +FL QFQ I+T++ P+VN F+S LFHRRS + SN+LS LT +R* +S*I I+RVVI +++ A R V I T T +RNHAR + R R VS N++ ++T Q K RVP + +TVT+L+ IPRH NQRETT+ Subject 2333 QRVLSDFRHVERHPNNGSILLQALNVILEIY*IFLYAQFQQRIVTTIQPIVNSFDSLLFHRRSYIRSNHLSHFLLTSHDR*HES*IFHISRVVITVKNTAGRERPV*IQTQTSVP*DRNHARSKLRRRRVSANVKNRRMKTLQKKSARVPTVSQVTVTVLVFIPRH*NQRETTS 2854
Range 4: 2274 to 2813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 91/180(51%) | 0/180(0%) | Minus/Plus |
Query 90 CVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSL 629 C TS QE T RC + VVS WF *RGI+ R VTV GTR *+V L LT R R RAWFR V*V*I T L A ITTR+M +I*D CQR VR++ ER LL LRR*NR+L K FT G V I *N* RK **I RMT R *R+ DP L Subject 2274 CAATSYPAQEITLRCCRLPQEVVSRWF**RGINTRTVTVTWLTVGTRALFF*RVFILRFLTLALTRRRRSLDRAWFRS*GTEV*V*IYTGLSRPAVFFTVITTRLM*KI*DSCQRSWLVRRKWERWLLLI*LRR*NRRLSKLFTIGCMVVTIRC*N*A*RKI**ISRMTFRA*RRIDPLL 2813
Range 5: 1481 to 1858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 51/126(40%) | 0/126(0%) | Minus/Plus |
Query 238 LPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDI 615 +PCS DY AML + +GG+FPLV M+R Y +G CY+AH RY AF + F + + +G+ P+ ARL++ ++ G L++ + G SR AFHCDYD+ Y + L L+ + G E +AS + Subject 1481 IPCSVDYVAMLRYVSGGKFPLVLMSRECYPDGLCYMAHMRYLCAFFCQPFRESDYPLGSWPSVARLKALVLKRFGDEALNIGVRGYYVSRRAFHCDYDSKYARSLMRLAGYVGGDEVIHSTLASTV 1858
Range 6: 2406 to 2813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 73/136(54%) | 0/136(0%) | Plus/Minus |
Query 90 **RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQXXXXXXXXXXXXXTKILNPSHNPRRNRNGKPRER*KNRTNLNLDASRQESKPCAT*ASRPWG*HQYRRQRGGNLST*RHSRT 497 **RV SS S RHS*NL LS SIS N Y+ T RK+L+* SVSSPE +KQ PL PY+ SLT ILN SH PRRN + K R *K R N N D KPCA *AS P G* Q ++ + N S + SRT Subject 2406 **RVYPSSGSERHS*NLLDLSLCSISTTNRYYHTTYRKQLR*SSVSSPELYQKQPPLPFPPYQPRSLT*ILNLSHKPRRNHSEKYRGT*KTRINSNSDFCPLGPKPCAI*ASPPSG*RQCQKPQDENPSEEKRSRT 2813
Range 7: 2245 to 2550 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 45/102(44%) | 0/102(0%) | Minus/Plus |
Query 353 GVFGRDRKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVRFFY 658 G F R A L KRLR DV+ RSFP GF DE *+ E LLL L VRE E F +W *P G EA +AHGF + S+F+F+R F+ Subject 2245 GTFDAGR*ALAPRRHTLLKRLRCDVVVCRRRSFPVGFNDEG*IQERLLLLGSL*VRERFSSEGFSSCGF*HWR*PDGGEA*IAHGFGPRGQKSEFEFIRVFH 2550
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 2287 to 2877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
363.1 bits(786) | 0.0 | 153/197(78%) | 0/197(0%) | Minus/Plus |
Query 43 FLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR 633 FLR+DFLPCS DYAAM SFAAGGRFPLV MTR KY NG+CYLAHCRYA AF+LKGF P FDIGA PTAA LR RMVS+LG R L LNLYG+ TSRG FHCDYDA Y KDLR +SA+IAGK+ EVV SDITPAMKQKTIEAVYDRLYG DSLLKLSIEKDLIDFKNDVQSLKKDRP++KVP ++S+ TQ+ L R Subject 2287 FLRYDFLPCSVDYAAMFSFAAGGRFPLVLMTRIKYLNGFCYLAHCRYACAFLLKGFDPKRFDIGAFPTAADLRRRMVSVLGDRSLGLNLYGAYTSRGVFHCDYDAKYIKDLRRMSAVIAGKDGVEEVVPSDITPAMKQKTIEAVYDRLYGGTDSLLKLSIEKDLIDFKNDVQSLKKDRPIVKVPFYMSEATQNSLTR 2877
Range 2: 2289 to 2858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.9 bits(574) | 0.0 | 130/190(68%) | 0/190(0%) | Plus/Minus |
Query 62 VCLDRWVGTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RK 631 V D GTL G SFF+LCTSFLKSIKSFS+L+F++ES+ PYNLS TASIVFCFIAGVMSE TTS S PAI AD KSF AS*SQ K PR+V PYKFK + L+P ET+R L AAVG AP+SK G KPFN A AY Q AK*Q PF YL LVI+TKGKRPPAAK+NIAA*S EQG+KS*RK Subject 2289 VASDM*KGTLTIGRSFFRLCTSFLKSIKSFSMLSFSNESVPPYNLSYTASIVFCFIAGVMSEGTTSSTPSFPAITADIRRKSFIYFAS*SQ*KTPRDVYAPYKFKPKLLSPSTETIRLLRSAAVGKAPMSKRFGSKPFNKNAHAYRQ*AK*QNPFRYLILVIRTKGKRPPAAKENIAA*STEQGKKS*RK 2858
Range 3: 2353 to 2877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 75/175(43%) | 0/175(0%) | Plus/Minus |
Query 43 SGQNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETT 567 + Q +L F V G+F+D S+FLQTL+V+ ++ VFLD Q Q + ++ ++ GFN L H RS V NYL L+ NR +*I I R+VI M++ A R VQI *T K+RNH + R G ST+++ V+TF K R+PAM *IT I IL H+N RE T Subject 2353 TSQRILSCFRHVKGDFDDWSIFLQTLYVVFEVD*VFLDAQLQQRVGAAIQSIIYGFNRLLLHSRSYVRRNYLFYPVLSSYNRRHTT*IFYILRIVITMKNAA*RVRAVQIQA*TSITKHRNHTSSKVRRGGKSTDVKTLRVKTF*QKRARIPAMS*ITEPI*ILDSSHQN*REAT 2877
Range 4: 1489 to 1863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 52/125(42%) | 0/125(0%) | Minus/Plus |
Query 235 CSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDIT 609 CS DY AML + GG+FPLV M+R Y++G+CYLAH RY AF + F + + +G+ PT ARL++ + G + L G TSR +HCDYD+ Y + R LS + G + S IT Subject 1489 CSVDYVAMLRYVCGGKFPLVLMSRINYQDGHCYLAHMRYLCAFYCRPFRESDYALGSWPTVARLKACVEKNFGVEACGIALRGYYTSRNVYHCDYDSSYMRGFRNLSGRVGGGSFDPSSLTSVIT 1863
Range 5: 2288 to 2833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 80/182(44%) | 0/182(0%) | Minus/Plus |
Query 87 FCVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSLK 632 FCV LV T RC+L R V SL F * SI M +VI* IAG R C*KV T VL P R WFR L V* *ICT A I IT R + +I C+RL R +R* L T L *+R+ LKP+ *+* SRKT* + T RV*RK D S K Subject 2288 FCVTIFCLVPWTMLRCFLLRRVVASL*F**LESSI*MGSVI*LIAGMRARFC*KVLTRSVLTSVLFPPRRTLEDVWFRCLVIEV*A*ICTARTRHAAFFIVITMRSI*KIYVVCRRL*LERTG*KR*FLLT*LLL*SRRRLKPYMIDCMAAPTRC*S*ASRKT*STSKTTYRV*RKIDQSSK 2833
Range 6: 2280 to 2558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 33/93(35%) | 0/93(0%) | Minus/Plus |
Query 362 RKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVR 640 + +FA LF+ L DV F G S PF D V +W+LLFS L V ++V+RF P + C H +GF +W + +FVR Subject 2280 KSLFALRFFALFRGLCCDVFFCGGWSLPFSSDD*NQVSKWVLLFSSLPVCVRVFVKRF*PEAF*HRCFSHRGGP*KTYGFGAW**KFRLEFVR 2558
Range 7: 1476 to 1616 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 21/47(45%) | 0/47(0%) | Plus/Minus |
Query 482 KALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS 622 KA Y WA+*Q P L L+++T+G PP +IA *S EQ S Subject 1476 KAHRYRIWAR*QCPSW*LILLMRTRGNFPPHTYRSIAT*STEQATAS 1616
Range 1: 1878 to 2096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 31/73(42%) | 0/73(0%) | Minus/Plus |
Query 40 EVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILARS 258 E A +IT ++K K IE+VY+R+ D+LL S+EKDLIDFK++++SL K++ + VP ++ + Q L R+ Subject 1878 EEEAPEITSSLKHKAIESVYERVSIHKDNLLARSVEKDLIDFKDEIKSLSKEKRSVTVPFYMGEAVQSGLTRA 2096
Range 2: 1551 to 1946 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 37/132(28%) | 0/132(0%) | Minus/Plus |
Query 202 YAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAV 597 Y A L+ A G R + + + + G CYLAH A + F F +G PT R+ LG L + G SR FHCD + + L I G EE + S + + E V Subject 1551 YHAALTIARGDRPRVGELLQYRPGEGLCYLAHAALCCALQKRTFREEDFFVGMYPTKFVFAKRLTEKLGPSALKHPVRGRQVSRSLFHCDVASAFSSPFYSLPRFIGGVEEEAPEITSSLKHKAIESVYERV 1946
Range 1: 1540 to 1929 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 40/130(31%) | 0/130(0%) | Minus/Plus |
Query 58 IGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQ 447 +G NP+A L +R+ + G S ++ G T FHCD + L +L G E E V + +T + K + V+D L + +SLL S+E DL+DF N ++L++ + ++VP L++ Q Subject 1540 LGRNPSATDLSARISAYFGFAAASYHIAGRYTGYNRFHCDNSSRKLYTLEYLREAAVGAEGEDEEVNTSLTDVGRVKALTQVHDSLRANRESLLVKSMEMDLVDFLNTTKNLQRGKEKLRVPFMLTEVQQ 1929
Range 1: 1987 to 2187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 28/67(42%) | 0/67(0%) | Minus/Plus |
Query 40 ITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILARS 240 IT ++K K IE+ ++R+ + D+LL S+EKDL+DFK DV+ +++P++KVP ++ + Q L RS Subject 1987 ITSSLKHKAIESAFERIPNNKDNLLARSVEKDLVDFKEDVKKFTREKPIVKVPFYMGESVQSCLTRS 2187
Range 2: 1636 to 1968 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 31/111(28%) | 0/111(0%) | Minus/Plus |
Query 268 DYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKE 600 +Y LS A G R P + R + G CYL H + A + F F +G T + +++ LG L+ ++ G T+R FHCD + L + GK+ Subject 1636 NYHIALSIARGERRPPTQLLRYQPGEGLCYLTHAAFCCAHFQRTFKEEDFYVGVYTTKHIVARKLIEKLGPESLNYHVRGRQTARDLFHCDLMSTTSYPFYSLPKFLGGKK 1968
Nucleotide Sequence (810 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
510.6 | 1580.7 | 24% | 7.343e-144 | 30% | NC_007448 | |
549.1 | 2017.8 | 29% | 1.903e-155 | 50% | NC_004724 | |
155.5 | 300.0 | 36% | 1.991e-46 | 31% | NC_022978 | |
155.5 | 272.8 | 30% | 2.79e-39 | 33% | NC_001598 | |
64.3 | 161.3 | 20% | 8.436e-24 | 33% | NC_013007 |
Alignments
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 12231 to 13031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
510.6 bits(1108) | 0.0 | 201/267(75%) | 0/267(0%) | Plus/Plus |
Query 9 SEVTRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 ++VTR Y +MSNHSWESLFKKFYGEADWK+YLS+SIAAHS+++KNLP+ +LYGGR+V+KS+FESAAP SFEQELGLFILSER+VGW K+CG+TVEEAAY LTNP A+ AE C PDVK+EGQKY+MEDV NFMRLSNLD +D+ L EQCWSLSNSCG LINPDDK RFV+LTFK+ ++I+D+ AN++CRV DYLVYAMSLF QR QKSQ+GNISLYEKYC +IR YL STDLFFT+PDR PLLTGILYDFCKEY+VFYS+Y Subject 12231 TKVTRPVPYHQTRMSNHSWESLFKKFYGEADWKRYLSRSIAAHSSEIKNLPEIRLYGGRVVKKSEFESAAPNSFEQELGLFILSEREVGWSKLCGITVEEAAYDLTNPKAYKFTAEICSPDVKSEGQKYTMEDVMNFMRLSNLDVNDKTLAEQCWSLSNSCGELINPDDKGRFVALTFKDRDIIDDAGAANVECRVGDYLVYAMSLFEQRTQKSQSGNISLYEKYCEYIRTYLGSTDLFFTAPDRNPLLTGILYDFCKEYNVFYSSY 13031
Range 2: 12236 to 13030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
391.9 bits(849) | 0.0 | 183/265(69%) | 0/265(0%) | Minus/Minus |
Query 14 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRVT 808 Y E*KTLYSLQKS R+PVS G LSG VKN+SVL K L+ QYFS E+LP CDF L NRD+A*TR*S TR S A S I SL L VR T R LSSGLI +PHELD DQHCS +LSL SK ++RMKF TSSI YF PS+FTSG H SA ALGFV YAASSTV+PH L HPTSRSLSMNSPNSCS +LGAADS SDF T LPPY+ +SGRF S ECAAILL+RY FQSASP*NFLNRLS EWFDI + * RVT Subject 12236 YDE*KTLYSLQKSYRIPVSNGFLSGAVKNRSVLPK*VLMYSQYFSYKEMLPDCDFWVLCSNRDIA*TR*SPTRHSTLAAPASSIMSLSLKVRATNRPLSSGLINSPHELDNDQHCSASVLSLTSKFDKRMKFITSSIVYFCPSLFTSGLHISAVNL*ALGFVRSYAASSTVIPHNLLHPTSRSLSMNSPNSCSKELGAADSNSDFFTTLPPYSRISGRFLISLECAAILLERYLFQSASP*NFLNRLSQEWFDILVWW*GTGRVT 13030
Range 3: 12234 to 13022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.0 bits(489) | 0.0 | 110/263(42%) | 0/263(0%) | Minus/Minus |
Query 12 VEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES*PSNF 800 VE+ + FTKVV + K* P+RRRE+ + T QV D+ + L++ ++ RL L L+K GH VN*IIA+AT ++ TR+++ + + + + HE IV I+Q RI *RPTL Q + I + THE+ ++FH + L+F+ YIR + + S G+ ++V C H ++ AP H+ A*YE S FL + RS R ++G Y+ T++Q + W*I + VC T R V LP+C PV+ FEQTFP VVRH V P NF Subject 12234 VENVIFFTKVV*DTRK*RIPIRRREKQVRTPQVSSDVFAVFLVQGDVARLRFLGPLLKQGHSVN*IIAHATFHVGGTRIINYVSVLKGESHEPPFIVWIDQFAARIG*RPTLFRQCLVVNIQI**THEVHHVFHSILLSFTFYIRAAYLGSEFVSFGICKIVCCFLHRYSA*FAPSHLPFA*YEQS*FLFKRVRSRRFELGFLYDPTTIQSNFW*ILNFT*VCCYTPREVSLPVCFPVELFEQTFPGVVRHPRLVVGHWPRNF 13022
Range 4: 12229 to 12978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.6 bits(331) | 0.0 | 97/250(39%) | 0/250(0%) | Plus/Plus |
Query 7 VQKLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYL 756 +QKL G T CRTT GKVCSK+ TG+Q GR+T L V HT +IYQ +C V * +P + +L +RN D SY*A+ W GA * W++Q T + P L S + RM*++K ++ WK SCV+ + W ++VG Y IR * I TI+ S L + +* RV VA AII*FT CP L++ R+ R+ S TW V SRR G YL Subject 12229 IQKLRGQCPTTRRGCRTTPGKVCSKSSTGKQTGRDTSLGV*QHTQVKLRIYQKFDCMVVGS*RNPSSNRRLLTLLNRN*DCSY*ANGRWDGANYAE*RWRKQHTILQIPKLTNSLPRYAARM*KVKDRSILWKT**TSCVYQIWMLTTRHWRNSVGRYPIRAAN*SIQTIKGGSWLSPLRTET*LMMRVPPTWNVAWAII*FTLCPCLSRGPRNRSLATSPCTRNTANTSELTWGVRTCFSRRRIGIRYL 12978
Range 5: 12230 to 12646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 65/139(47%) | 0/139(0%) | Plus/Plus |
Query 8 FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHA 424 ++SY+AS+LP DEDVEPL+GKSVQK+LRG RLEEIP+*+Y TL+ +STR S V * KE+R + S + GI T+HTKR G+ Q + ++ G S+ +++ Q M GCK *R ++ GR E HA Subject 12230 YKSYAASALPPDEDVEPLLGKSVQKVLRGSRLEEIPL*EYSSTLK*N*ESTRNSTVWW*GRKEIRVRIGGS*LF*TGIRTVHTKRTGGGMEQIMRNNGGGSSIRSYKSQSLQIHCRDMQPGCKK*RTEVYYGRRDELHA 12646
Range 6: 12839 to 12979 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 14/47(30%) | 0/47(0%) | Plus/Plus |
Query 617 HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTY 757 +VP+* + E+ + + E+L +Q +LG+Y + H A +++TY Subject 12839 YVPV*AEDPEIAVWQHLLVREILRIHQNLLGEYGPVFHGAG*ESVTY 12979
Range 7: 12232 to 12648 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 65/139(47%) | 0/139(0%) | Minus/Minus |
Query 10 DA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIEYLVDFSRPRSVRQYF*IGISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LL 426 +A*+S LP L LHP I + K W * L P C P RLV* V IP + E + R SL+ Y T+E+LVD SV Y * GISS+L PR+ F*TDFP SGSTSSS GR LA *LL Subject 12232 NA*SSSRLP*YTSVLHFLHPGCISRQ*ICKLWDL*DRMLLPPPLFRIICSIPPPVRLV*TVLIPVQKS*EPPIRTRISLRPYHHTVEFLVDS*FHLSVLLYS*RGISSSLLPRRTF*TDFPRSGSTSSSGGRALAA*LL 12648
Range 8: 12679 to 12846 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 27/56(48%) | 0/56(0%) | Minus/Minus |
Query 457 GTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALP 624 GT RKLDNR RD R+ L * *E R YR D*S TN I TN P Subject 12679 GT*RKLDNRPRDIPRWRHPHHQLCLCP*R*EPRTALYRLD*SIRRTNWITTNTVPP 12846
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 12248 to 13039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
549.1 bits(1192) | 0.0 | 218/264(83%) | 0/264(0%) | Plus/Plus |
Query 18 TRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 T L LY KMSNHSW SLFKK+YGEADW+KYLSKSI AH+A++K LPD QLYGGR V+KS+FESA PRSFEQELGL +LSERDVGW KMCG+TVEEA YQ+TNP A+PI AEKCDPDVKTEGQKY+MEDV NFMR SNLD +D+IL EQCWSLSNSCGVLINPDDKERFV+LTFKNNEL+NDSSNANIDCRV DYLVYAMSLFN R+QKSQAGNISLYEKYC +IR YLE+TDL+FTSPDRIPLLTGILYDFCKEY++FYSTY Subject 12248 TTLVLYHQTKMSNHSWGSLFKKYYGEADWRKYLSKSIVAHTANIKTLPDVQLYGGRTVKKSEFESATPRSFEQELGLLMLSERDVGWCKMCGITVEEAMYQITNPEAYPITAEKCDPDVKTEGQKYTMEDVMNFMRRSNLDINDKILAEQCWSLSNSCGVLINPDDKERFVALTFKNNELVNDSSNANIDCRVGDYLVYAMSLFNCRSQKSQAGNISLYEKYCAYIRTYLENTDLYFTSPDRIPLLTGILYDFCKEYNIFYSTY 13039
Range 2: 12247 to 13038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
446.0 bits(967) | 0.0 | 201/264(76%) | 0/264(0%) | Minus/Minus |
Query 17 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRV 808 YVE*K LYSLQKS*RMPVS GILSG+VK KSV SK L+* QYFS*SE+LPACDF L LNRD+A*T+*S TRQS+FALLESL NSLFL VR T RSLSSGLI+TPHELD+DQHCS KILS +S+LERRMKF TSSI YF PSVFTSGSHFSA IG A GFV WY ASSTV+PHIL PTSRSL++ SPNSCSNDLG ADS SDF T+LPPYN* SG+ F A A +LL+RYF QSASP* FLNRL HEWFDIF+ *R S V Subject 12247 YVE*KILYSLQKS*RMPVSNGILSGEVKYKSVFSK*VLM*AQYFS*SEMLPACDF*LLQLNRDIA*TK*SPTRQSMFALLESLTNSLFLKVRATNRSLSSGLIKTPHELDRDQHCSAKILSFISRLERRMKFITSSIVYFCPSVFTSGSHFSAVIGYASGFVIWYIASSTVIPHILHQPTSRSLNIRSPNSCSNDLGVADSNSDFFTVLPPYN*TSGKVFMLAVWATMLLERYFLQSASP*YFLNRLPHEWFDIFVWW*RTSVV 13038
Range 3: 12254 to 13039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.8 bits(613) | 0.0 | 135/262(52%) | 0/262(0%) | Minus/Minus |
Query 24 VCGVEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES* 809 VCG++D +LF +++ENA +* YP+ R E *IG F V D+S IL ++RN+TRL LL ++*GH VN*+I +ATVY+ V +V+ VI + + ++ F I+G+NQN RI *RPTL + I I*V THEI ++FHRVFL S +I I FF DR VR+LV CL HS+ HL P H+ *++ S FLLE RS R K GL ++ST+VQL++ F+V V N R VF PICLPV FEQT P*VVRHL VE+* Subject 12254 VCGIKDIILFAEIIENAGE*RYPIGRSEI*IGIF*VSSDVSAILFVERNVTRLRLLTPTIE*GHSVN*VITHATVYVRVA*IVNQFVILKSESNKPFFIIGVNQNSARIG*RPTLFR*DFIIYI*VGTTHEIHHVFHRVFLPLSFHIWIAFFRCDRIRFRVRDLVHCLLHSYPAHLTPTHVPFT*HQKS*FLLERPRSRRFKFGLLHSSTAVQLNVRQSFYVSCVGYNALREVFPPICLPVVLFEQTSP*VVRHLRLVVEN* 13039
Range 4: 12396 to 13040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 109/215(51%) | 0/215(0%) | Minus/Minus |
Query 166 CMWSRRHCTLYKSRRECQ*VRVSCQAT*RINRYFPSTS*YEYNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIE 810 CMW++R+ TL ++ REC+*V VS + * INRYF S * + NT +AK YP TS + *IGT RKL N RDSL R +R* RY * *E + V Y R *S+ TN I+TN +FYH YL DA*NS LPS I Q H D IF L + GS* GTLP PQ TS P L V IPAR SE Q RTS QFY RT E Subject 12396 CMWNKRYYTLCRNHRECR*VTVSYREK*NINRYFLSKF*CKRNTFRRAKCYPLATSDSYN*IGT*RKLSNHPRDSLCSRCLNR*PIRYS*K*EQQTVLYHRG*SKLRTNWIETNTVPLRFYHLYLGWNDA*NSSRLPSCISAPQFSHLDRIFPL*SDTLQGS*FGTLPPPQLSRTSYTNPRPVHLTSEVLIPARTTSESPIQIRTSSQFYRRTTE 13040
Range 5: 12237 to 12344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 32/36(89%) | 0/36(0%) | Minus/Minus |
Query 7 GISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN 114 GISSNLPPR F*TDFPMSGSTSSS GRELA *LLN Subject 12237 GISSNLPPRSTF*TDFPMSGSTSSSGGRELAL*LLN 12344
Range 6: 12243 to 13040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 135/266(51%) | 0/266(0%) | Plus/Plus |
Query 13 KLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAXXXXXXXXXXXXXPHT 810 +L * ST RCRTTHG+VCSK+ TGRQIG NT L+ L T T*K+ + +CT VEL* SP L+ +LR SSRN D+ * + W G RC *LW+RQ T SRT S KN I+M*+L+ +NTRWK ISCV T*I +I+ ++VGLY IR F*L P I+N L +IT+ T + T+ *TVA I *FT CPY RS +RV FR +SI L S T K+PIY S GY Y AFS KS +S PHT Subject 12243 ELQR*FSTTRRRCRTTHGEVCSKSTTGRQIGGNTSLRAL*PTQLT*KLCRTFSCTAVEL*RSPNLNRRLRGRSSRN*DF*C*VNGTWVGVRCAG*LWRRQCTKSRTLKRIRSQRKNAIQM*KLRGRNTRWKT**ISCVVPT*I*MIKS*RNSVGLYPIRAEF*LTPMIKNGLLLSLLRITNWLTIQATRT*TVAWVIT*FTLCPYSIVGVRSRKRVTFRSTKSIALTSELT*KIPIYISLLPIGYRYSPAFSMISAKSIISFIPHT 13040
Range 7: 12238 to 12786 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 99/183(54%) | 0/183(0%) | Plus/Plus |
Query 8 FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RV 556 F+SY+ASSLP DEDVEPLMGKSVQK+LRGGRLEEIP+*++C + S+VRR*NC+EVR *+ SE++RAGI T K G+ DV +CG G+VP HEP S S KM S C++* +I DGR EFHASF RY+**N +LV I FV D* R * T S+ +*R+ Subject 12238 FKSYNASSLPPDEDVEPLMGKSVQKVLRGGRLEEIPL*EHCSPHS*HKNFAGRSVVRR*NCEEVRI*IGDSEVVRAGIRTSDVK*TGRGLV*DVRDNCGGGNVPNHEP*SVSDHSGKMRSRCEN*GAEIHDGRRDEFHASFQPRYK**NLSGTVLVSIQFVRSFD*PR**RTVCCSHF*E*RI 12786
Range 8: 12847 to 12996 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 25/50(50%) | 0/50(0%) | Plus/Plus |
Query 617 HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTYWHS 766 +VPI +EV G*+FAL +VL +Q +L KYRFI H + DT+T+ HS Subject 12847 YVPIQL*ESEVASG*HFALRKVLRLHQNLLRKYRFIFHFSR*DTVTHRHS 12996
Range 1: 11748 to 12188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 63/147(43%) | 0/147(0%) | Plus/Plus |
Query 369 DVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 DVKT G K++++ V F++ N + ++ LVE CWSLSNSCG LINP D +RF+SL FK ++ +D++ A + DYL + ++L+ S +G LY+ + H+ KYLE+ DL + +P PL+ GILYD C EY+ STY Subject 11748 DVKTVGCKFTIQVVNEFVKKINGNVAEPSLVEHCWSLSNSCGELINPKDTKRFISLIFKGKDIADDNTEAVVSSSYLDYLSHCLNLYETCCLPSNSGKKQLYDDFLVHVIKYLENADLEYRAPRDNPLIAGILYDMCFEYNTLKSTY 12188
Range 2: 11424 to 11525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 11/34(32%) | 0/34(0%) | Plus/Plus |
Query 36 RWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAH 137 R+ + +SW LF++F+G +WK LS++ + + Subject 11424 RFSNPAGYSWGELFRRFFGGQEWKNLLSEAASTN 11525
Range 3: 11562 to 11705 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 15/48(31%) | 0/48(0%) | Plus/Plus |
Query 180 GRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQL 323 G ++ + FESA SF EL L + + K+CG+ + A L Subject 11562 GEVITRGAFESAPNNSFAYELSLLLTFNKTEEACKLCGVAIATALADL 11705
Range 4: 11834 to 11986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 24/51(47%) | 0/51(0%) | Minus/Minus |
Query 455 R*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTK 607 R*S + A + S SL L +R+ +S GLI +PHELDKDQ CST+ Subject 11834 R*SK*EEETTASVLSSAISLPLKMREINLFVSLGLISSPHELDKDQQCSTR 11986
Range 1: 11643 to 12083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 65/147(44%) | 0/147(0%) | Plus/Plus |
Query 369 DVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 DVKT G K++++ V F++ N + ++ LVE CWSLSNSCG LINP D +RFVSL FK +L + A + DYL + ++L+ S +G SLY+++ H+ YLE++DL + SP PL+ GILYD C EY+ STY Subject 11643 DVKTVGCKFNIQSVTEFVKKINGNVAEPSLVEHCWSLSNSCGELINPKDTKRFVSLIFKGKDLAESTDEAIVSSSYLDYLSHCLNLYETCNLSSNSGKKSLYDEFLKHVIDYLENSDLEYRSPSDNPLVAGILYDMCFEYNTLKSTY 12083
Range 2: 11319 to 11408 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 10/30(33%) | 0/30(0%) | Plus/Plus |
Query 36 RWMKMSNHSWESLFKKFYGEADWKKYLSKS 125 R+ +N+ W LF++F+G +WK +S++ Subject 11319 RFSTPANYYWGELFRRFFGGQEWKNLMSEA 11408
Range 1: 12363 to 12590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 25/76(33%) | 0/76(0%) | Plus/Plus |
Query 582 IDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 I V DYL + +++ + S AG + + + H Y +TDL ++S ++IPLLTGI+Y+ ++ +F S+Y Subject 12363 IGSSVGDYLSHCLTVLARSKLPSSAGETKMKDDWLAHCITYFSATDLNYSSKEKIPLLTGIIYELIDQHKMFLSSY 12590
Nucleotide Sequence (423 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 4082 to 4501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 109/140(78%) | 0/140(0%) | Plus/Plus |
Query 2 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 421 ESITDFAECKVAV+LEELGCLRANAEN+KIRNLAGDS+AAKLASEIVVDI+AKP++K A+H +S+ E K+ KP LRGG + GV++EF+DF+LSSASRLFSC+ADQQRIK+YVHYLD AVSFLD+NYEN+SFI+RVLSK Subject 4082 ESITDFAECKVAVDLEELGCLRANAENEKIRNLAGDSMAAKLASEIVVDIEAKPVAKHAEHPKSEVSEKKEHAKPGLRGGSKAGVLKEFLDFVLSSASRLFSCVADQQRIKSYVHYLDTAVSFLDQNYENLSFIMRVLSK 4501
Range 2: 4081 to 4503 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 96/141(68%) | 0/141(0%) | Minus/Minus |
Query 1 PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 423 P +RTR + E FS*F S+ +TA SR* T L+RC*SA QLNKRDAD++ KS NS TP PPRK G SF S SL SA L G AS+STTISLA+FAA ESPARFRI SFSAFALK PNSS STATLHSAKSVIDS Subject 4081 PFDRTRIMKERFS*F*SKNDTAVSR*WTYDLIRC*SATQLNKRDADERTKSRNSFKTPAFEPPRKPGFACSFFSLTSLFGCSACLATGFASMSTTISLANFAAIESPARFRIFSFSAFALKHPNSSRSTATLHSAKSVIDS 4503
Range 3: 4088 to 4324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 33/79(42%) | 0/79(0%) | Minus/Minus |
Query 8 RTSTQARLRNIFRLARITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRD 244 R STQA R + T RV D F Y+DHY S RC V E+ N + IR QT+ LFK+H +F F +I D Subject 4088 RASTQAGFRVLLLFTHFTLRVFCVFSDRFRFYVDHYLASQFRCH*VASEVPNFFILGIRSQTSQLFKIHSYFAFGEICD 4324
Range 4: 4364 to 4501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 24/46(52%) | 0/46(0%) | Minus/Minus |
Query 284 FREDPQNK*NIFVIFI*ERDGHVKIVNVGLDALLIRYATKQARRGR 421 FR + N+ + VI I*ER VK+++V L++LLIR+AT+QA RGR Subject 4364 FR*NAHNEGEVLVILI*ERYSGVKVMDVRLNSLLIRHATEQA*RGR 4501
Range 5: 4083 to 4487 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 55/135(41%) | 0/135(0%) | Plus/Plus |
Query 3 SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIRARRKMFLSRACVEVRGMELLENLLILFYRPRRACLVA*RISSASRPTFTILTWPSLS*MKITKMFHLFC 407 ++S+I N K W LKS V* RM + +F S T+WQR+ L +*WS * N SL+ + TR V +R+ + ACVE R E ++ I F+RPR AC VA RI++ T LT S*++IT+ C Subject 4083 NQSQISPNAK*LWILKSWDV*ERMPRMKKFGTSLATQWQRNWLAR*WST*KRNLSLNTQNTRRVK*VKRRSTRNPACVEARKPEF*KSSSISFFRPRHACSVAWRINNELSRTSITLTPLYRS*IRITRTSPSLC 4487
Range 6: 4081 to 4488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 53/136(39%) | 0/136(0%) | Plus/Plus |
Query 1 GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YVRDERCS*AALAWRSEEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLRSLS*RGRLFPR*KLRKCFIYFA 408 G++H F M S G+*RV +FE EC + +S+ R L GSE * +SGR+R T * + EE* E LAWR E S+ R+ F VRV LV L GS + +R L * + R +LR+ +++A Subject 4081 GINHRFRRMQSSCGS*RVGMFESECRE*KNSEPRWRLNGSEIG*RDSGRHRSETCR*TRRTPEE*SE*KEGARETRLAWRLESRSFERVPRFRSFVRVTLVQLRGGSTTN*VVRPLP*HRCIVLRSELREPLLHYA 4488
Range 7: 4095 to 4274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/60(47%) | 0/60(0%) | Minus/Minus |
Query 15 HSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYIPQN 194 HSS *R V L RPL * SLP S +R E + +HS SN TLQ P+ L I +N Subject 4095 HSSGVLRV*RQVSLLCRPLSR*PISLPLSRQRGSEFFHSRHSLSNIPTLQDPQLLCIRRN 4274
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 4099 to 4518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.8 bits(480) | 0.0 | 94/140(67%) | 0/140(0%) | Plus/Plus |
Query 2 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 421 ESITDFAECKVAVEL+ELGCLRA AEN+KIRNLAGDS+AAKLASEIVVDID+KP ++ +S S+ + +++ +P LRGG R GV+ EF+ F++SSA R+F DQQRIK+YV +LD AVSFLD NYEN+SFI++VLSK Subject 4099 ESITDFAECKVAVELDELGCLRAEAENEKIRNLAGDSIAAKLASEIVVDIDSKPPLRQMSNSSSENVDKREIQRPGLRGGSRIGVVGEFLHFVVSSALRIFKYATDQQRIKSYVRFLDSAVSFLDYNYENLSFIMQVLSK 4518
Range 2: 4098 to 4520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 87/141(62%) | 0/141(0%) | Minus/Minus |
Query 1 PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 423 P E T IN+ FS* S+KETA S+ T* L+RC*S L R A+ K NS TP L PPR GL S +S S E L GL S+STTISLAS AA ESPARF I SFSA ALKQPNSSSSTATLHSAKSVIDS Subject 4098 PFESTCIINDRFS*L*SKKETAESKKRT*DLIRC*SVAYLKIRKAELTTK*RNSPTTPILEPPRNPGL*ISRLSTFSDDELLICLNGGLESMSTTISLASLAAIESPARFLIFSFSASALKQPNSSSSTATLHSAKSVIDS 4520
Nucleotide Sequence (887 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 5984 to 6421 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 93/146(64%) | 0/146(0%) | Minus/Plus |
Query 448 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW 885 VR+YV+ LK RMR LGL NEHVV+SF E+VPLLLR+KLS TF+ RA+ KW + CLSA+RREK FAL C+V LGFP+F R++GGV CD LLSS RR DR+ V K CDA G LFH D +GDSTS+GLKGGGSQ+FLW Subject 5984 VRKYVKNFLKSRMRGLGLRNEHVVNSFGELVPLLLRNKLSETFIYRAVPMSKWCWKVCLSAERREKFFALVCLVTLGFPYFARFLGGVVCDKLLSSLRRAYDRVIVFLKERCDAAMNGLRCLFHFDGNGDSTSAGLKGGGSQTFLW 6421
Range 2: 6464 to 6778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 69/105(66%) | 0/105(0%) | Minus/Plus |
Query 91 WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV 405 +AGCKCV+SH+++FFLCVSLVEEVN+IA+++G SF SRP+SS LA LLQPER V+YSGKL+T F F ISPRVPL +K FFEW+ S LL+ +RRFLR++AV Subject 6464 YAGCKCVFSHHDLFFLCVSLVEEVNMIAKILGCLSFFSRPISSALAFALLQPERFVEYSGKLSTTFLFFLKISPRVPLKIKGFFEWVAGSPLLRGVRRFLRLIAV 6778
Range 3: 6827 to 6862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/12(92%) | 0/12(0%) | Minus/Plus |
Query 7 YPCQRAVPVIPS 42 YP QRAVPVIPS Subject 6827 YPSQRAVPVIPS 6862
Range 4: 5983 to 6759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 139/259(54%) | 0/259(0%) | Plus/Minus |
Query 110 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFXXXXXXXXXXXXLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 886 NLR +R L HSKN GTRGEI ++N+ V NFPE ST+LSG +R++AS ++ GRE +K P AI FTSST ET +KN CE THLQPA K+SA+R R N+ RN CEPPPFKP DVESP S+ NK+ P ASH + T RS RR +D+ LSH TPP R K G P T H AK+FS RSAD+ HHF AR V DNL R+SSGT S E TTCS L PK RMR FK TY RT Subject 5983 NLRTPLNRGLPATHSKNPLILRGTRGEILRKNKKVVLNFPEYSTNLSGCKRANASADDIGREKNDKHPRIFAIMFTSSTKETHKKNRSWCEKTHLQPA*PKDSAKRTKRNNKPHRNVCEPPPFKPADVESPFPSK*NKQRNPFMAASHRSFRKTITRSYARRNEDKSLSHTTPPKKRAK*GNPRVTKHTSAKNFSRRSADKHTFQHHFDMGTAR*MKVSDNLFRKSSGTNSPNEFTTCSFLRPKPRMRLFKKFLTYLRT 6759
Range 5: 6829 to 6864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/12(75%) | 0/12(0%) | Plus/Minus |
Query 5 VDGMTGTALWHG 40 +DG+TGTALW G Subject 6829 LDGITGTALWLG 6864
Range 6: 5984 to 6262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Minus |
Query 607 KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P*ATHAIL*KSLNIFTH 885 ++I +P T E K+Q D E E+ +S QA F P + GDR+I + RQL+ *+ WH L +R H++FV+* HA *K N+ H Subject 5984 ELIAHYPTQKTSEVGKSQSD*AHEREKLFPPLS*QAHFPAPLRHGDRTIDESFRQLVS*EQWHQLPERIHYMFVS*TQTAHATF*KVFNVLAH 6262
Range 7: 6596 to 6859 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 37/88(42%) | 0/88(0%) | Plus/Minus |
Query 10 WYDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRS*LSGVVDTPFGLKEKQRQ 273 WY+RH LA +T ++SL SKVQ H + AK+ N R +PL+K F + +ARR+ EKK+K R+ LS V++ P GL + + Q Subject 6596 WYNRHGPLAGVTTISRSQSSLPSKVQLHRDQAKESPNAPQ*RTTGHPLEKPFDLERHARRNFEKKQKSRAQLSRVLNEPLGL*KSECQ 6859
Range 8: 6275 to 6574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 44/100(44%) | 0/100(0%) | Plus/Minus |
Query 295 DERETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSS 594 +ER+TP N RD+V+L +* DA ++ +VVR NALTT Q R+T *QAP KRLRA+ *T RC I I + M+ T +T L + +V ++S Subject 6275 EERQTP*NFRDHVHLFN*GDA*EK*IVVRENALTTRVAQR*RKTH*T**QAP*KRLRATAL*TGRCGITIPVKMK*TTQPIHGCVTSLL*KNYHTVVRTS 6574
Range 9: 6346 to 6861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 66/172(38%) | 0/172(0%) | Minus/Plus |
Query 8 FVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHTI 523 F+ * W F+I FK LA VS+ V A A L L*VR LA + I +RL+S G+ RE+ R F+ L AG S + R+V +L KV + FV +N S+R + ++VF V S + S++ S E EPSKEER+ + W L PK AG+TI Subject 6346 FISF*REW*FHICRFKGRWLANVSMGLVITFSAFCAIFGLRGL*VRFLAPRSIFLMRLLS*RGEHDRENSRVFVVLLTTNIISAGIRSFTAREVR*VLWKVEHDFFVFSQNFSSRASQDQRVFRVGGR*SSIEGRSEIPSLDRGEAEPSKEERTENEKWWLPQPKGRAGYTI 6861
Range 10: 5985 to 6245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 34/87(39%) | 0/87(0%) | Minus/Plus |
Query 624 CVNMFKDF*RIACVA*G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AG 884 C + K F*++AC * TN *+ WCH Y SC I RSP +G K AC+L ++ S S *S W F S V G Subject 5985 CASTLKTF*KVACAVWV*ETNM**IRSGSWCHCSYETSCLKLSSIVRSPCRSGAGKCACQLSGGKSFSRSCA*SLWDFPTSLVFWVG 6245
Range 11: 6000 to 6491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 58/164(35%) | 0/164(0%) | Plus/Minus |
Query 378 ASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTLSYACDPLKVF 869 A KRTYN + + A++A +T ET AS LN M N H N N+ + + H S G+T V Y T P N E P L TR R+ Q T +T S D TT V VAP+P+ NS VR+L + ACD LK F Subject 6000 ARKRTYNPRSPKIAQNALNVITSPIETFASHRPLNRQMWNHHSRQNEINNATHSWLRHIAPLEKLSHGRTHVVMKTRAYRTLPHPKNERSREIPE*LSTRARKTFPAAQLTSTLSSTTSTWGPHDR*KFQTTCFVRAVAPTPRTNSLHVRFLDPNRACDFLKSF 6491
Range 12: 6606 to 6860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 34/85(40%) | 0/85(0%) | Plus/Minus |
Query 9 MV*PAQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMP*LTFRSSRHTFRVEGE 263 MV*PA+ FG N H LSSFEGS S + E E E T+KT R E+F ++TK TF+S++ T R E Subject 6606 MV*PARPFGWGNHHFSFSVLSSFEGSASPRSSEGISERPSIEDYRPPTRKTL*S*EAREEKF*EKTKKSCSTFQSTQRTSRAVKE 6860
Range 13: 6558 to 6860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 42/101(42%) | 0/101(0%) | Minus/Plus |
Query 9 GVSLSSRGRFLLCWRCFSFNPKGVSTTPES*LRHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELCRSYH 311 GV SS ++ W ++P+G +T ES* R F FFS+ L A K F SG L * F FA* +*+*TFE RE + + V AK CR YH Subject 6558 GVCRSSHDQYHQRWHSLFYSPRGSLSTLES*ARLFCFFSKFLLACLSRSKGFSSGWPVVLY*GAFGDSFA*SR*S*TFEGRED*EREMVVTPAKGPCRLYH 6860
Range 14: 6342 to 6518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 27/59(46%) | 0/59(0%) | Minus/Plus |
Query 351 IVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFAS 527 +V I+ M I H V*+ AR RF+GAC V R+ +VVSAF+RTT Y +AS Subject 6342 VVYFILTGMVIPHLPV*RAVARKRFYGACYYV*CVLRYLWATRVVSAFSRTTIYFSYAS 6518
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 5998 to 6435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 65/146(45%) | 0/146(0%) | Minus/Plus |
Query 448 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW 885 VREY L+ RMR+LGL+N+ VV+SFA+++P+L++ K+S +FL +K +S C SA+RREK AL C+V L PFF+R +G AC+ L+SS RR +R+KV K+ C ++ LF D S S+GL+GG S+ L+ Subject 5998 VREYALSSLRCRMRALGLNNDFVVNSFADLLPMLVKRKVSNSFLSSVYRPIKSFSYMCASAERREKFLALVCLVGLSLPFFVRIVGAKACEELVSSARRFCERVKVFLKQKCVSLLSFLSCLFFSDAGDSSASAGLRGGASRVTLF 6435
Range 2: 6478 to 6780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 50/101(50%) | 0/101(0%) | Minus/Plus |
Query 103 WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLR 405 W G K + SH+N+ FLC ++V++VNV + +GG SF +PVSSV A +LLQP+R YS KL TAF F+ SPR P L+K FFE + S++ K++R+ LR Subject 6478 WEGLKLLLSHHNLLFLCFAMVDDVNVFVKALGGLSFFVQPVSSVFAAVLLQPDRFAGYSEKLVTAFEFILKCSPRAPALLKTFFEGVANSTVSKTVRKLLR 6780
Range 3: 6800 to 6871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 10/24(42%) | 0/24(0%) | Minus/Plus |
Query 12 TFERREVSGQRVGVIRAKELCRSY 83 +FE+ E Q V V ++LC SY Subject 6800 SFEKEEGCVQTVRVFTGRKLCPSY 6871
Range 4: 6357 to 6773 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 50/139(36%) | 0/139(0%) | Plus/Minus |
Query 110 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR 526 + R +F L SKN + +G RGE + N AV +F E +LSG + ++A+TEETG KE+PP L TFTSST + N L C+ + P+ K+ R R + PP P D E +S+ NK+ Subject 6357 SFRTVFDTVLFATPSKNVLSSAGARGEHFRMNSKAVTSFSEYPANLSGCKSTAANTEETGCTKKERPPKALTKTFTSSTIAKHKNNRLWCDRSSFSPSHPKDKRALARRTKRWNSVTRDAPPLSPADAELSPASEKNKQ 6773
Range 5: 6165 to 6269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 18/35(51%) | 0/35(0%) | Plus/Minus |
Query 614 SHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQV 718 SHA P R K G+ N T H RAK+FS RSA+ + Subject 6165 SHAFAPTMRTKKGRLNPTKHTRAKNFSRRSAEAHI 6269
Range 6: 5997 to 6092 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 18/32(56%) | 0/32(0%) | Plus/Minus |
Query 791 GTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 886 G+ SAKE TT SL P RMR + L YSRT Subject 5997 GSKSAKEFTTKSLFKPNARMRHRRELRAYSRT 6092
Range 7: 6411 to 6872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 41/154(27%) | 0/154(0%) | Minus/Plus |
Query 11 WRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHT 472 WR+A ++ P+ + +GR +A I+ + R +R + G F A GFF +++ +T ++ +LR+ Y + + ++R ++ VF* Q K SK SS E SK+ R + G S +SCA HT Subject 6411 WRVASDAIPPLRSPRECSFIFRVGRAEATPIAP*PIIFMFCDGRRCERLCQGFGGSFFLCATGFFRVRSSTFATGQIRGVLREACYSFRIHPKVFASRACATQNVF*GRGEQYCIKNRSKTSSILSEEV*ASKKRRVACRR*GFSPAESCARHT 6872
Range 8: 6694 to 6870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 24/59(41%) | 0/59(0%) | Plus/Minus |
Query 13 YDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARR 189 YD HS L T T+C + S SK++ +KK SN * + LKK F *+ ARR Subject 6694 YDGHSFLPVKTLTVCTQPSSFSKLKLPH*ESKKFSNGF*YSTVRHALKKRFE*RRRARR 6870
Nucleotide Sequence (314 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
241.2 | 811.5 | 42% | 2.438e-63 | 49% | NC_004724 | |
232.0 | 712.2 | 44% | 1.398e-60 | 42% | NC_007448 | |
180.2 | 419.4 | 45% | 5.398e-45 | 39% | NC_001598 | |
176.1 | 288.1 | 37% | 9.411e-44 | 58% | NC_022978 | |
156.9 | 265.1 | 33% | 5.846e-38 | 59% | NC_027712 |
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 10999 to 11310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.2 bits(520) | 0.0 | 100/104(96%) | 0/104(0%) | Minus/Plus |
Query 3 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 314 CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALSACNLINK+SANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDR FL HLFSLTSLE Subject 10999 CSVPANYDSVQRNFTDQCVSLSGYQCVYMVNEPSAAALSACNLINKKSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRTFLTHLFSLTSLE 11310
Range 2: 11001 to 11312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.6 bits(403) | 0.0 | 82/104(79%) | 0/104(0%) | Plus/Minus |
Query 1 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 GS +VREKR +K LSTSLPP+F+SPPEARTTNVLLR*E++DTSKVPPPKSYTA+FAD L I+L ADKAAA+GSL++YTH *PLKETH SVKFL TLS* AGTE Subject 11001 GSKDVREKR*VRKVLSTSLPPKFKSPPEARTTNVLLR*EIIDTSKVPPPKSYTAKFADFLFIRLHADKAAAEGSLTMYTH**PLKETH*SVKFL*TLS*FAGTE 11312
Range 3: 11001 to 11312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 51/104(49%) | 0/104(0%) | Minus/Plus |
Query 1 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT 312 F A +L ++EFH +RF EWL M V+GQRT FIS+Q ++ E+ E G IRFW W+F RV++FLPQQ++ ARF R + GRK C Q+ FFS +RT Subject 11001 FSASEL*QCSEEFH*SVRFLEWLSMCVHGQRTFRGCFISVQSDKQEVGELGCIRFWRWDFRRVYYFLPQQYIRSARFWRRFKFGRKGC*QNLSDSSFFSNILRT 11312
Range 4: 10999 to 11265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 46/89(52%) | 0/89(0%) | Plus/Minus |
Query 48 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**SCC*WFVVHIHALVTTQRNALVGEIPLHAIVIGGHRT 314 +I S+QI +S SAH++ +VAV N+ HV+S T+KIVY Q+R L+ IA **S FV H+H L+TTQ NAL+ EIPL+ ++I H T Subject 10999 NIPSSQI*ISSRSAHYECIVAVGNNRHVESPTSKIVYSQVRRLLVYQIAR**SSRGRFVDHVHTLITTQGNALISEIPLNTVIIRWH*T 11265
Range 5: 11000 to 11263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/88(52%) | 0/88(0%) | Minus/Plus |
Query 50 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM 313 V+C I +GIS +AF *VV N C W+TN + LYQ AI* R +R W YTIL V L TC F TAT CAL E *IW E M Subject 11000 VQCQRIMTVFRGISLISAFP*VVINVCTWSTNLPRLLYQRAI**TRSRRTWLYTILEVGLSTCLLFPTATIHS*CALLEEI*IWEEGM 11263
Range 6: 11000 to 11269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 44/90(49%) | 0/90(0%) | Plus/Minus |
Query 44 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN 313 C H F P+ L +KRA + CCG+K* TR+K H QNRI P S S +C LIK VR P T I NHS+KR +*NS N A N Subject 11000 CQHPFLPNLNLLQKRALRMYCCGRK**TRRKSHLQNRIQPSSPTSCLSDCTLIKQPRKVR*PCTHIDNHSRKRTDQ*NSSEHCHNSLALN 11269
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 10991 to 11302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.0 bits(500) | 0.0 | 96/104(92%) | 0/104(0%) | Minus/Plus |
Query 3 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 314 CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALS CN I ++SANLAVYDFGGGTF+VSIISYRNNTFVVRASGGDLNLGGRDVDRAFL HLFSLTSLE Subject 10991 CSVPANYDSVQRNFTDQCVSLSGYQCVYMINEPSAAALSVCNSIGRKSANLAVYDFGGGTFNVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLTHLFSLTSLE 11302
Range 2: 10993 to 11304 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.7 bits(364) | 0.0 | 77/104(74%) | 0/104(0%) | Plus/Minus |
Query 1 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 GSN+V+EKR + A STSLPPRF+SPPEARTT VLLR EM+DT KVPPPKS TA+FAD L I+L + AAA+GSL IYTH *PL ETH SVKFL TLS*LAGTE Subject 10993 GSNDVKEKRCVRNARSTSLPPRFKSPPEARTTKVLLRYEMIDTLKVPPPKS*TAKFADFLPIELHTESAAAEGSLIIYTH**PLSETH*SVKFLWTLS*LAGTE 11304
Range 3: 10993 to 11223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 37/77(48%) | 0/77(0%) | Minus/Plus |
Query 82 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARF 312 FG RQLR* KEF+ +RF + L + VY QR S +QF+ *E+ + G +RF WW+ *RV+HF+ QQH A F Subject 10993 FGTRQLR*CPKEFY*SVRFTQRLSVCVYDQRAFSRCTFCVQFDW*EVRKLGRLRFRWWDL*RVYHFVSQQHFRCASF 11223
Range 4: 10992 to 11255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 38/88(43%) | 0/88(0%) | Plus/Minus |
Query 50 HLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN 313 H F D +K A + CCC K* TR + HH+NR P SY NC L R YT + KR +*NSF YRNWR PN Subject 10992 HPFHRDLNHLQKLAQRKCCCDTK**TR*RSHHRNRKRPSLRTSYQSNCTQKVQRLKAR*SYTHTDSR*VKRTDQ*NSFGHYRNWRVPN 11255
Range 5: 11138 to 11257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 19/40(48%) | 0/40(0%) | Plus/Minus |
Query 48 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQI 167 +I S +I ++ S+H++ VVA+RND HVK TT+IV Q+ Subject 11138 NIPSTEI*ITSRSSHNESVVAIRNDRHVKGPTTEIVNGQV 11257
Range 6: 10991 to 11083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 18/31(58%) | 0/31(0%) | Plus/Minus |
Query 222 VVHIHALVTTQRNALVGEIPLHAIVIGGHRT 314 V HIH L+ + NAL+ +IPL IVIGG+RT Subject 10991 VDHIHTLIAAE*NALISKIPLDTIVIGGYRT 11083
Range 7: 10992 to 11255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 37/88(42%) | 0/88(0%) | Minus/Plus |
Query 50 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM 313 VR PPITI KGI +AF + CI +T+ Q + AI + + W +TI VV LTC SF ATT C L *I E M Subject 10992 VRYPPITIVSKGILLISAFHSAAISVCI*STSLQPLHFLCAIRLVGSPQTWPFTISVVGPLTCLSFRIATTLSLCELLEVI*ISVEGM 11255
Range 1: 10055 to 10363 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.2 bits(387) | 0.0 | 71/103(69%) | 0/103(0%) | Minus/Plus |
Query 6 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSL 314 CSVPANY+ +QR+FT+ CV+LSGY CVYM NEPSAAALSAC+ I ++ + VYDFGGGTFDVS+IS NNTFVVRASGGD+NLGGRD+D+AF+ HL++ L Subject 10055 CSVPANYNCLQRSFTESCVNLSGYPCVYMVNEPSAAALSACSRIKGATSPVLVYDFGGGTFDVSVISALNNTFVVRASGGDMNLGGRDIDKAFVEHLYNKAQL 10363
Range 2: 10057 to 10332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 57/92(62%) | 0/92(0%) | Plus/Minus |
Query 37 KALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 KALS S PP+F SPPEARTT VLL E+ +TS VPPPKSYT LI QA+ AAADGSL++ T *PL+ T SVK LC *LAGTE Subject 10057 KALSMSRPPKFMSPPEARTTKVLLSAEITETSNVPPPKSYTRTGEVAPLILEQAESAAADGSLTM*TQG*PLRLTQLSVKDLCKQL*LAGTE 10332
Range 3: 10057 to 10332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 36/92(39%) | 0/92(0%) | Minus/Plus |
Query 37 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSF 312 F QL+ AK F+R + EWLP+ ++G R + L NQ +RF WN *R F QQH CGARF E G R Q F Subject 10057 FSPCQLQLFAKVFYRKLCQSEWLPLCLHG*RAVGCGAFCLF*NQRRHFTRSRVRFRRWNV*RFRDFSAQQHFCGARFGR*HELGWSRHRQGF 10332
Range 4: 10056 to 10307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 33/84(39%) | 0/84(0%) | Minus/Plus |
Query 62 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IW 313 V+ P TI CKG+ P +*V T W T+ + + + L + S + TI VE LT P F +TT LWCAL T* W Subject 10056 VQSLPTTIVCKGLLPKVVSI*VATPVFTWLTSRRLRRFLLVLESKAPLHPFSCTISEVERLTFP*FQRSTTLLWCALREVT*TW 10307
Range 1: 10160 to 10468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 70/103(68%) | 0/103(0%) | Minus/Plus |
Query 6 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSL 314 CSVPANY+ +QR+FT+ C++LSG+ CVYM NEPSAAALSAC+ I + + VYDFGGGTFDVS++S NNTFVVRASGGD+NLGGRDVDRAFL +L++ L Subject 10160 CSVPANYNCLQRSFTENCINLSGFTCVYMINEPSAAALSACSKIKGATLPVLVYDFGGGTFDVSVLSALNNTFVVRASGGDMNLGGRDVDRAFLEYLYNKAHL 10468
Range 2: 10162 to 10449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 56/96(58%) | 0/96(0%) | Plus/Minus |
Query 25 RWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 R+ + ALSTS PPRF SPPEARTT VL + + +TS VPPPKS T+ + LI QA+ AAADGSL + TH PLK +SVK LC *LAGTE Subject 10162 RYSRNALSTSRPPRFMSPPEARTTKVLFKADSTETSNVPPPKS*TSTGSVAPLILEQAESAAADGSLIM*THVKPLKLMQFSVKDLCKQL*LAGTE 10449
Range 1: 9661 to 9951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 64/97(66%) | 0/97(0%) | Minus/Plus |
Query 24 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHL 314 CSVPA ++S+QRNF +CV+LSGY C+++ NEPSAAA SA I K + VYDFGGGTFDVS +S RNNTFVV+ASGGD+NLGGRDVDRA L ++ Subject 9661 CSVPAAFNSIQRNFIMECVTLSGYHCLHIINEPSAAAFSAFRKIPKDMNFIMVYDFGGGTFDVSAVSVRNNTFVVKASGGDMNLGGRDVDRALLEYV 9951
Range 2: 9663 to 9938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 54/92(59%) | 0/92(0%) | Plus/Minus |
Query 37 KALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 +ALSTSLPP+F SPP+A TT VLLR E +TS VPPPKSYT L I L A+KAAA+GSL I W PL+ TH +KFL AGTE Subject 9663 RALSTSLPPKFMSPPDALTTKVLLRTETAETSNVPPPKSYTMIKFISLGIFLNAEKAAAEGSLMICKQWYPLRVTHSIMKFL*IELNAAGTE 9938
Nucleotide Sequence (613 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
386.4 | 1369.3 | 21% | 1.248e-106 | 38% | NC_004724 | |
358.5 | 1015.5 | 21% | 3.236e-98 | 40% | NC_007448 | |
166.9 | 243.6 | 26% | 1.458e-40 | 39% | NC_001598 | |
176.6 | 266.2 | 32% | 1.85e-43 | 37% | NC_022978 | |
139.9 | 139.9 | 25% | 2.005e-32 | 42% | NC_013007 |
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 11386 to 11988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.4 bits(837) | 0.0 | 171/201(85%) | 0/201(0%) | Plus/Plus |
Query 6 EGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 +G+DDK+EDVRVNKSILT VMLPYVNRTL ILE+TLKSYAKNMGG+R+VKCDLVLIGGSSYLPGLEDILSKHR++DRILKV+DPRAAVAVGCALYSSCLSGSQGLLL+DCAAH+I+IA MSC QIICAPAGAPIPFSGTTPLYL +AN+NS RQ+AVFEGEY+KCP+NRKICGSNIKF DIGV S+SY+PITFYLDV+I++ Subject 11386 KGSDDKKEDVRVNKSILTTVMLPYVNRTLNILEATLKSYAKNMGGLRSVKCDLVLIGGSSYLPGLEDILSKHRRIDRILKVADPRAAVAVGCALYSSCLSGSQGLLLVDCAAHTIAIAGMSCDQIICAPAGAPIPFSGTTPLYLPKANRNSQRQIAVFEGEYVKCPRNRKICGSNIKFLDIGVTSVSYSPITFYLDVTISS 11988
Range 2: 11430 to 11975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.1 bits(714) | 0.0 | 138/182(76%) | 0/182(0%) | Minus/Minus |
Query 50 TSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRI 595 TS+*KV+G YE L+TP+S+N MF+PQIFLFLGHF YSPSNTA *RCEFLLA KY GVVPE G+GAPAGAQ+IW QL+ AI ++*AAQS +N+PCEPERHDEYSAQPTATAARGS TF+IRS RCFD++SS+PGR E+PPISTKSHLTLR PP+F AYD V SKIF+VL T*GSIT VRI Subject 11430 TSK*KVMGEYETLVTPISRNLMFEPQIFLFLGHFTYSPSNTAI*RCEFLLAFGKYNGVVPEKGIGAPAGAQIIWSQLIPAIAMV*AAQSTNNSPCEPERHDEYSAQPTATAARGSATFNIRSIRRCFDKISSKPGRYEEPPISTKSHLTLRNPPIFLAYDLSVASKIFKVLLT*GSITVVRI 11975
Range 3: 11386 to 11796 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 80/137(58%) | 0/137(0%) | Minus/Minus |
Query 6 RERNGSSGRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILPFIISPF 416 RE N SS SAN+LVTAH Y D VS AID *QPL*T +AR + RTTDRD S + +F YSI+ SVFR D+ T KIRR + +*+A N PTH+F VR F + *SSI VREHN +NTFIH NIL FI++PF Subject 11386 REGNRSSSWSANNLVTAHTGYCDGVSRAID**QPL*T*KARRI*RTTDRDRRSGISDFQYSIDSSVFR*DIF*TRKIRRTTD*H*VAFNAP*PTHIFGVRFKCCFQNI*SSIDVREHNSSENTFIHSNILLFIVAPF 11796
Range 4: 11839 to 11967 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/43(42%) | 0/43(0%) | Minus/Minus |
Query 459 IEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM 587 IE D V +A ++ +F V +FS+ GT ++FTFE+C+LT+ Subject 11839 IESDG*V*NACDTDIKKFNV*TANFSISGTLHVFTFEYCDLTL 11967
Range 5: 11387 to 11797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 71/137(52%) | 0/137(0%) | Minus/Minus |
Query 7 PRTEWELRPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPL 417 PR E EL+ ERK*SG SS L R+CE RNR +T VN +GT + AHNRPR L ++L +FD+ VGVS + ED K + L+R * +HP F RT + ++L+FY RKGA* *EYFYS *HPPFY + L Subject 11387 PRRE*ELQLERK*SGHSSYRLLRWCEPRNRLITALVNLKGTTNIAHNRPRPPLGDQRLSIFDRFVGVSIRYLLNPEDTKNHRLALSRI*RSVTHPYFWRTI*VLLPKYLKFY*RKGA*Q**EYFYSL*HPPFYRRSL 11797
Range 6: 11849 to 11911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/21(52%) | 0/21(0%) | Minus/Minus |
Query 469 CSTHRFFCFWDILYIHLRTLQ 531 C +FF FWD IHLR L+ Subject 11849 CLNRKFFYFWDTSRIHLRILR 11911
Range 7: 11400 to 11798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 66/133(50%) | 0/133(0%) | Plus/Plus |
Query 20 *KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLG 418 *KGGC* E*KYS+ YAPLR+*N K +VR+K+GW + *+R S + F+SS + +ETPT+ SN +S S RGRLCA+ +VP FT V RLR S + +S +EL PD+LRS SS+S+LG Subject 11400 *KGGC*SE*KYSHYCYAPLRQ*NFKYFGSNT*IVRQKYGWVTER*MRLSANRWFFVSSGFRRYLIETPTNRSNIESR*SPSGGRGRLCAIFVVPFRFTRAVISRLRGSHHRNSRYEL*PDYLRSSWSSYSLLG 11798
Range 8: 11856 to 11966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 14/37(38%) | 0/37(0%) | Plus/Plus |
Query 476 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLL 586 +RR*I ++SQK KNL +H I + + + +H L Subject 11856 IRR*IREVSQK*KNLRFKH*IS*YRCHKRFILTHHFL 11966
Range 9: 11495 to 11722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 43/76(57%) | 0/76(0%) | Plus/Plus |
Query 115 SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL 342 +RT K WVG L+A * * L IF V + S RNTD+ IEY*K E++SRSVVR RA +VH+GCY*SIA+L Subject 11495 NRTPKIWVGYGALNAT*C*SVVLRIFRV*KISYRNTDESIEY*KSLIPERRSRSVVRYIRRAFQVHKGCY*SIARL 11722
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 11381 to 11980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
358.5 bits(776) | 0.0 | 156/200(78%) | 0/200(0%) | Plus/Plus |
Query 9 GADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 G D ++EDVRVNK+ILT+VMLPYVNRTLKIL+STLKSYA++M +KCDLVLIGGSSYLPGL D+L KHR VDR+L+VSDPRAAVAVGCALYSSCLSGS GLLLIDCAAH+++IAD SCHQI+CAPAGAPIPFSG+ PLYLARANKNS R++AVFEGEY+KCPKNRKICG+N+KF DIGV S SY P+TFY+D SI++ Subject 11381 GIDGRKEDVRVNKNILTSVMLPYVNRTLKILDSTLKSYARSMNESAQIKCDLVLIGGSSYLPGLADVLKKHRSVDRVLRVSDPRAAVAVGCALYSSCLSGSGGLLLIDCAAHTVAIADRSCHQIVCAPAGAPIPFSGSMPLYLARANKNSQREIAVFEGEYVKCPKNRKICGANVKFFDIGVASTSYEPVTFYMDFSISS 11980
Range 2: 11422 to 11973 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
306.2 bits(662) | 0.0 | 132/184(72%) | 0/184(0%) | Minus/Minus |
Query 50 IETSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRI 601 +E S *KV G+YE+L TP+S+N F PQIFLFLGH YSPSNTA RCEFLLALAKYRG++PENG+GAPAGAQ IW*QL+SAI +*AAQSISNNP +PERH+EY+AQPTATAARGSET RST RCF R S+RPGR +DPPISTKSHL + + AYDFKV+S+I VLFT*GSIT VR+ Subject 11422 MEKSI*KVTGSYEVLATPISKNLTFAPQIFLFLGHLTYSPSNTAISRCEFLLALAKYRGILPENGIGAPAGAQTIW*QLLSAIATV*AAQSISNNPPDPERHEEYNAQPTATAARGSETLKTRSTLRCFFRTSARPGRYDDPPISTKSHLICALSFILLAYDFKVESRILSVLFT*GSITEVRM 11973
Range 3: 11402 to 11761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 55/120(46%) | 0/120(0%) | Minus/Minus |
Query 30 SANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNI 389 SANDLVT VRY D VS +DQ* P + EAR + TD R+ N * +I+ + Q+V QTGKI R ++*IAL++ H VRL* R *+ S+H+REH+ +N FI+ NI Subject 11402 SANDLVTTSVRYSDGVSRTVDQ**PSGSGEARRI*CATDGHSSPRIRNP*DAIDAPMLFQNVRQTGKI*RSSYKH*IALDLRTFVHTPSVRL*GRI*NLKRSVHIREHHRSENVFIYSNI 11761
Range 4: 11831 to 11974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 21/48(44%) | 0/48(0%) | Minus/Minus |
Query 459 DRNIQIEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM 602 D I IEGDR VR A H+ + +F V TD V +F F+H N T+ Subject 11831 DGEIHIEGDRLVRSARHSYIKKFNVCSTDLPVLRALNVFPFKHGNFTL 11974
Range 5: 11395 to 11799 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 54/135(40%) | 0/135(0%) | Plus/Plus |
Query 23 KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLGYYA 427 KG C* +*K+S+ APL E N+ + R KVVR ++ VRFS + +SSRSGG + S K F S RL + VPL V+TDRL S SG +LSP+ LRS RS++ + YA Subject 11395 KGRC*SK*KHSHFGDAPLCEQNA*DSRFDLKVVR*EYERKCANQVRFSAYRRIVISSRSGGRSEKASERRSRLKGFGSSGCCGRRLRIIFFVPLRIRRVITDRLCGSHRRYSGQKLSPNRLRSSRSTNPIFREYA 11799
Range 6: 11878 to 11964 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 13/29(45%) | 0/29(0%) | Plus/Plus |
Query 506 KQKNLWVEHKILRHWRDEHLVRAYHLLSG 592 +Q++LW + I + EH VRA HLL G Subject 11878 EQEDLWSKR*IF*YRSGEHFVRACHLLYG 11964
Range 7: 11373 to 11762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 56/130(43%) | 0/130(0%) | Minus/Minus |
Query 1 ERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPLRK 390 ERK GD+ CPL R CE +RSV T RGT + NR E K L D+ + PPDRED LNRT* RTTL+ L F S KGA *E FY *H PF+H+ L K Subject 11373 ERKRFGDNFCPL*RRCEPHSRSVITLRIRRGTKNIMRNRRPQQPEDPKPLRRDRRSDAFSERPPDREDMTILL*ALNRT*FAHFRSYS*RTTLRSNLES*AFCSHKGASPK*ECFYLL*HLPFFHRYLSK 11762
Range 1: 10460 to 11044 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 80/195(41%) | 0/195(0%) | Plus/Plus |
Query 24 REDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 R DV VN S L V P+V RT+KI++ + Y +M NVK L+++GGSSYLPGL LS VD L + D RAAVA GCALYS+CL +LL+DCAAH++SI+ C I+C PAG+PIPF+G + + +N ++ A+FEG+++KC N++I ++ ++GV + + L++++++ Subject 10460 RVDVLVNVSELAEVAAPFVERTIKIVKEVYEKYCSSMRLEPNVKAKLLMVGGSSYLPGLLSRLSSIPFVDECLVLPDARAAVAGGCALYSACLRNDSPMLLVDCAAHNLSISSKYCESIVCVPAGSPIPFTGVRTVNMTGSNASAVYSAALFEGDFVKCRLNKRIFFGDVVLGNVGVTGSATRTVPLTLEINVSS 11044
Range 2: 10495 to 10860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 48/122(39%) | 0/122(0%) | Minus/Minus |
Query 59 VVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITA 424 + P NG+G PAG + Q + + L*AAQS +N R EY A P ATAAR S + ST +R SRPG+*EDPP + LT + Y IF VL T G+ T+ Subject 10495 LTPVNGIGEPAGTHTMDSQYLLLMLRL*AAQSTNNIGESFRRQAEYKAHPPATAARASGSTRHSSTNGIEERRDSRPGK*EDPPTISNLALTFGSNRILLQYFS*TSLTIFIVLSTNGAATS 10860
Range 1: 10571 to 11149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 79/193(41%) | 0/193(0%) | Plus/Plus |
Query 30 DVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 DV VN S L V P++ RT++I+ + Y +M VK L+++GGSSYLPGL+ +LS +D + +SD RAAVA GCALYS+CL +LL+DCAAH +SI+ +C I+C PAG+PIPF+GT + ++ +N + A+FEG+Y+KC N++I ++ D+GV + I L++++++ Subject 10571 DVLVNVSELAKVAAPFIERTVRIVREVYEKYLSSMRLSNEVKAKLLMVGGSSYLPGLKSLLSSTSFIDECIILSDARAAVAGGCALYSACLRNDSPMLLVDCAAHDLSISSKNCESIVCVPAGSPIPFTGTRTVNMSGSNAKAVYSAALFEGDYVKCRLNKRIFSGDVTLGDVGVTGTASRTIPLTLEINVSS 11149
Range 2: 10603 to 10965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 45/121(37%) | 0/121(0%) | Minus/Minus |
Query 62 VVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSIT 424 +VP G+G PAG Q I Q + I AAQS ++ R EY A P ATAAR SE S +R RPGR E+PP + LT M Y I VL G+ T Subject 10603 LVPVKGIGEPAGTQTIDSQFLLLILKSCAAQSTNSIGESLRRQAEYRAHPPATAARASERMMHSSMKDVDERRDFRPGRYEEPPTMSSLALTSLDRRMLLRYFSYTSLTILTVLSMNGAAT 10965
Range 1: 11087 to 11539 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 63/151(42%) | 0/151(0%) | Plus/Plus |
Query 156 CDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 C L+ +GGSSYLPGL+ +LS V R++++ D R++VA GCA+YS CL+ +LLIDCA+H +SI C I+ PAGAPIPFSG + L A+ S +FEG+Y KCP N +I S I+ D+G+ ++ + +++ +++ Subject 11087 CVLITVGGSSYLPGLKGLLSAIPYVSRVIELPDARSSVAAGCAMYSLCLAKDSSMLLIDCASHHLSIPSYQCESIVLVPAGAPIPFSGRRTISLMNASATSSYNAILFEGDYSKCPMNERIYSSAIQLKDLGITAVRPVTRSITIELDVSS 11539
Nucleotide Sequence (1459 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine rootstock stem lesion associated virus, complete genome
Range 1: 14757 to 16145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
771.3 bits(1677) | 0.0 | 357/463(77%) | 0/463(0%) | Plus/Plus |
Query 2 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ 1390 ++LYA+AARTTSPKVQR DSD++F GD+T+ VTEGDLKKVL+G APL RFTNKLRT GRTFTEAY+DFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*WK LRI * AQ+KTQ+ *SS+LM +LI *YA I A * +AKT**+I +V IT R+R IT+PQL+S +T I W*NSF*++ T GFFS+ T +EERR CAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*S LFVKKEIVKM+VIVSPYEAEDIL RST+MLRNIDSG LD +ECIK FST+TR++HCAKASYQWCVDTGL QRDCAEKRLIDT+ESNLR+A PL+REKVA H CKDEP+ELVAFITRKYVKLTGV REAVKIEMR+LSKTVLNKLSLEMAFYMSP K+ + Subject 14757 LLLYALAARTTSPKVQRADSDIIFQNTYGDKTVVVTEGDLKKVLEGCAPLNRFTNKLRTFGRTFTEAYVDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WKFALRILRH*CYYAQIKTQHY*SSSLMMKLICRNC*YAGIYACRIAGM*LVVIAKT**RILKVHITPSSARERSGMITSPQLKSTITLIAW*NSF*KQETFFGFFSKVTSKEERRDTCAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SNLFVKKEIVKMRVIVSPYEAEDILTRSTEMLRNIDSGALDTRECIKAFSTLTRDLHCAKASYQWCVDTGLCQRDCAEKRLIDTVESNLRLAHPLIREKVATHFCKDEPKELVAFITRKYVKLTGVAAREAVKIEMRTLSKTVLNKLSLEMAFYMSPRAWKNAE 16145
Range 2: 14768 to 16123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
708.5 bits(1540) | 0.0 | 340/452(75%) | 0/452(0%) | Minus/Minus |
Query 13 GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA 1368 GDI*KAIS DSLF TVLDR RISIFTASR TPVSLTYFRVMNAT+SLGSSLQ+* ATFSR RG*A L+FDS VSI+RFSAQSR +NPVSTHH Y+AFAQC SRV VEN L+HS +SN PLSMFRNISVDL RMSSAS*GDTIT ILTISFFTKR DYRLSFYQYLLQT+LHGTAMRSKEEIVSFEEGAQ++RRSS V EKKP++V+ *KEF+H + VI+L +CG VI+ R R + VM T +I YYVFA + H+ +A I AY* R IN IR DD* CVL CA +* ILS +FHHITSLLPNWR+LLTGV TTPPSVF+AYILANIFLLCC+SESFG AP+KSAAR ESSAGIPNSAAALS*GILCL ATQKS YASV VRP VRSLLVNL+RGA+PSSTFLRSPSVT VLSP + SES L*TLGDVVLAA A Subject 14768 GDI*KAISKDSLFKTVLDRVRISIFTASRAATPVSLTYFRVMNATSSLGSSLQK*VATFSRMRG*ASLRFDSTVSIKRFSAQSRWHNPVSTHHWYDAFAQCKSRVSVENALMHSLVSNAPLSMFRNISVDLVRMSSAS*GDTITLILTISFFTKRFDYRLSFYQYLLQTILHGTAMRSKEEIVSFEEGAQVSRRSSFDVTLEKKPKNVSCF*KEFHHAISVIVLFNCGLVIIPDRSRADDGVMCTFKILYYVFAITTSHIPAMRHA*IPAY*QFRQINFIIRLDD**CCVLICA**H*CLRILSANFHHITSLLPNWRKLLTGVFTTPPSVFKAYILANIFLLCCNSESFGQAPKKSAARYESSAGIPNSAAALS*GILCL*ATQKSTYASVNVRPKVRSLLVNLLRGAHPSSTFLRSPSVTTTVLSP*VF*KIISESAL*TLGDVVLAARA 16123
Range 3: 14867 to 16123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
640.3 bits(1391) | 0.0 | 289/419(69%) | 0/419(0%) | Plus/Plus |
Query 112 RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVT 1368 R S E A*R+ TS *+H*Q +N+ H + V *FLRG+QA DASAQR RR+GDT RF+P G + ETL* K KNV +YVR ED* SKY R* PI *E SYVMEIC QN E+LVLLRT QNT LLV+KSD +VNLPK+LICGYLRVS GDVTGC RED++KDFEGAHHTVIRS T++YDYES KEYN++ CVVKFFLETGDVFWFFL+SD +GRAARHLRTFFEANNFFFGSHCGTME+CLKQVLIETESVI+SFCEERNR*DEGDSISL*S*RHS ++N VAKHRQW VGYE ++*S+ D N R ALRKS+V MVR*+ V+ T LR KT DR+ ++ + RS S REGG+S L R*T R SGVH+A+I * + C +GG K+R+A SI*DS K*T+ RNGLLYVT Subject 14867 R*SQESA*RVRTS**IH*QAANFRPHVYGGVC*FLRGLQA*DASAQRGRRIGDTSRRFVPSCGLFRCLPETL*ITTK*KNVCKYVRFED*GRSSKYAR**FAPIR*ERSYVMEICAQNPEALVLLRTNQNTTLLVVKSDDEVNLPKLLICGYLRVSHRGDVTGCNREDVIKDFEGAHHTVIRSRTVRYDYESAVKEYNNADCVVKFFLETGDVFWFFLQSDIKGRAARHLRTFFEANNFFFGSHCGTMEYCLKQVLIETESVIESFCEERNR*DEGDSISL*S*RHSNKIN*NVAKHRQWSVGYERVH*SVLDANARFALRKSIVPMVR*HRVVPT*LRRKTLDRHR*IKSETRSPSHTREGGDSFLQR*TQRTSGVHHAEIR*AHRCGGAGGCKNRNAHSI*DSFK*TIFRNGLLYVT 16123
Range 4: 14761 to 14820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Plus |
Query 6 CYMPSQRELHRLKFKGAILM 65 C SQRE HR KF+G IL+ Subject 14761 CSTLSQREPHRPKFRGLILI 14820
Range 5: 14766 to 16139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
556.4 bits(1208) | 0.0 | 272/458(59%) | 0/458(0%) | Minus/Minus |
Query 11 VFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRCDGI 1384 VF *HI+GHF*R FI* CLR* H Y Y LP HT + N+F R+ERH* FIF KM RHLLA+ER+S+S I +G+DQAFF A+ L P +NAPL+R FCA+ S RR+ FN IQ +TVYVSQH * NVFSFIRRYYH HLNDFFLHKK RLQTQFLSVPASNN PWYRNAIQRRNC*LRRRCA+ APLFL C FGEKT++R L+RI P N + T *L RN T S+ +CD H +N LL LRD S R R N RIL +* HQ * L +LCF+LC L ++SE +FPSHNF PT LA I NG YY SLQSVHT +HFS LL FREFR + K+R VRIF YPQ CG VELRHL+LV HAEINIR + A SS+ VSE KRC KH L+I F + NS + +V + +IRI+PLNF RC SRC+ + Subject 14766 VFPRSR*HIEGHF*R*FI*NCLR*SAHFYFYSLPRRHTCELNVFPRDERH*FFGFIFAKMSRHLLAYERVSESQI*FNGVDQAFFGAITLAQPCVNAPLVRCFCAVQISR*RRERFNALSRIQRSTVYVSQHFS*SC*NVFSFIRRYYHPHLNDFFLHKKIRLQTQFLSVPASNNTPWYRNAIQRRNC*LRRRCASVAPLFL*CHFGEKTKKRLLFLKRISPRNQRYCTL*LRTRNHTGPFSSG*RCDVHLQNPLLRLRDYNQSHPRDATRVNTRILTISAD*LHHQT*RLVMLCFDLCVIALVPQDSERKFPSHNFSPT*LAQITNGRIYYSALSLQSVHTCKHFSTLL*FREFRAST*KVRS*VRIFCWYPQFCGRVELRHLMLVSHAEINIRLRKRAAESSQLVSESIKRCAPFKHFLEITFCHDNSLVTVSVLKDYIRISPLNFGRCGSRCESV 16139
Range 6: 14866 to 15513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 138/216(64%) | 0/216(0%) | Minus/Minus |
Query 111 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPL 758 NQKTSPVS+KNFTTQ LYSL DS*SY V+ER+TV* APSKSF SSR PVTSP DTRKYPHI+ G+LT SDL TS++VF* VR+STS S F* QISIT*L SY IG + *R YLL QSS+RTY +TFF F +QRVS ++P G NL VSP LR R*AEAS AC PRRNQ+T * C F C** *EV+ QA S*D L Subject 14866 NQKTSPVSKKNFTTQSALLYSLTADS*SYRTVLERMTV*CAPSKSFITSSRLQPVTSPRCDTRKYPHINNFGRLTSSSDLTTSNVVF*FVRNSTSASGF*AQISIT*LLSYLIGANY*RAYLLLRPQSSKRTYLQTFFYFVVIQRVSGKHLKSPQLGTNLLLVSPILRPR*AEASYACKPRRNQHTPP*TCGRKFAAC**IY*EVRTLQALS*DHL 15513
Range 7: 15589 to 16122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 120/178(67%) | 0/178(0%) | Minus/Minus |
Query 834 VTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 1367 VTY+RPFL VYL LS*IE A L L+PP H * * I A**TPL L VHL K++SPPSR E ER + + RS VF+R+ V T QRTI T LLR+A L L+S+ L* SYPT HCLCFAT++L ECLQLHKEILSPSS*RFLSSQK+SITDSVSISTCFKQ SMVPQCDP Subject 15589 VTYRRPFLKIVYLKLS*IECAFLFLQPPAPPHL*A*RISA**TPLVLWVHLCKNESPPSRV*EGERVSDLIQRCRSSVFRRNHVGTTLCQRTIGTMLLRSANLALASRTL*CTLSYPTLHCLCFATFQLILLECLQLHKEILSPSS*RFLSSQKDSITDSVSISTCFKQYSMVPQCDP 16122
Range 8: 14773 to 14820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Minus |
Query 18 HQNRPFEL*AM*FSLR 65 +QN+P EL AM FSLR Subject 14773 YQNQPSELWAMWFSLR 14820
Range 9: 15310 to 16146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 174/279(62%) | 0/279(0%) | Plus/Plus |
Query 555 NMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPR*PNTPN 1391 NMR+F R+ R D + SRR +K F C+SH + +N V LR+ S* V * L G+IL R+ R LVFSPK RKSGA+ AHLLRS*QFLLWIALRYHG LFEAGTDRN*VCNR FL*RKKSLR* **YLLMKLKTF + Q CCET*TV WI + LK RR* E C AQK R NGAL G N A KNA*S P ++I*+SL LS ARRWR+IF KMN ++*WRS R N L+ +V GR *+*+C LYLRQ+*IN *KWP ICH T N Subject 15310 NMRVFTRVASRGCDWL*SRRRNKGF*RCTSHRHPLENGPV*LRVRS*RVQ*R*LRGEILFRNRRRFLVFSPK*HQRKSGATLAHLLRS*QFLLWIALRYHGVLFEAGTDRN*VCNRIFL*RKKSLR*G**YLLMKLKTF*QDQLKCCET*TVERWIRESALKRSRR*REICTAQKHRTNGALTQGCANVIAPKNA*STPLNQI*DSLTLSYARRWRLIFAKMNPKN*WRSSRGNTLSSQVWRRGRL*K*KCALYLRQF*INYL*KWPSICHLERGKTQN 16146
Range 10: 14920 to 15282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 71/121(59%) | 0/121(0%) | Plus/Plus |
Query 165 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI* 527 T+ EL A ++R+LISAW TS RCLSST+PQ+WGY+ KI T R F RNSLN +K EKC +VCTL*RL+ **+ PL I AN VG KLCDGNL SE S H SKHN S Q+* Subject 14920 TSCELSAARLRRRMLISAWLTSIRCLSSTRPQNWGYQQKIRT*LRTF*VLARNSLNYNKVEKCLQVCTL*RLRAE**IRPLVICAN*VGEKLCDGNLRSES*GTSAITHKSKHNITSRQV* 15282
Grapevine leafroll-associated virus 2 isolate 93/955, complete genome
Range 1: 14732 to 16120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
692.5 bits(1505) | 0.0 | 328/463(71%) | 0/463(0%) | Plus/Plus |
Query 2 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ 1390 ++LYA+AARTTSPKVQR DSDV+FS G+ + VTEGDLKKVLDG APLTRFTNKLRT GRTFTEAY+DFC+AYKHK+PQLNAAAELGIPAEDSYLAADFLG CPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*W+ + NR C A++ * S+LM L L Y*+A C E *R A + * +I R + + Y+ + LR+ I *+ *R V S GF SE + ER ICAPSSKLTISSL RIAVPWSIV*SRY* KLSL*SILF KKEIVKM+VIVSPYEAEDIL +STD+LR+IDSGVL+ KECIKVFSTITR++HCAKASYQW VDTGLYQRDCAEKRLIDT+ESN+R+AQPLVR+KVA H CKDEP+ELVAFITRKYV+LTGV IR+ VK+EMRSL++ VLNKLSLEMAFY+SP K+ + Subject 14732 LLLYALAARTTSPKVQRADSDVIFSNRFGESNVVVTEGDLKKVLDGCAPLTRFTNKLRTFGRTFTEAYVDFCIAYKHKLPQLNAAAELGIPAEDSYLAADFLGTCPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WRITKKNLNRSCCYARI*ILCF*WSSLMLVLSCLNY*FAVTCECQDVER*RVATVRI*REILRAITIRLSALEPYNMTASLPLRNSTILIA**SFS*RLVVSFGFSSEVKLRVERCDICAPSSKLTISSLGRIAVPWSIV*SRY*LKLSL*SILFAKKEIVKMRVIVSPYEAEDILKKSTDILRDIDSGVLNTKECIKVFSTITRDLHCAKASYQWGVDTGLYQRDCAEKRLIDTVESNIRLAQPLVRQKVAAHFCKDEPKELVAFITRKYVELTGVGIRDVVKMEMRSLTRAVLNKLSLEMAFYVSPRAWKNAE 16120
Range 2: 14743 to 16098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
601.8 bits(1307) | 0.0 | 300/452(66%) | 0/452(0%) | Minus/Minus |
Query 13 GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA 1368 GD * AIS D+LF T L RERISIFT S + TPVS TYFRVMNAT+S GSSLQ+* ATF RTRG*A FDS VSI+RFSAQSR*YNPVST H EAFAQC SRVIVENTLIHS + TPLSM RN+SVD RMSSAS*GDTIT ILTISFF KRIDYRLSF YLLQT+LHGTAMR KEEIVSFEEGAQM+ RS+ + SE+KP+D T L*++ ++ + ++ L ++LY R + ++ L+I + A+RH+S + ++Q++A * R +N +IR D *++ + A Q+ RF H+ITSLLP+ RRLLTGV TTPPSVFRAY+LANIFLLCC+SESFG PRKSAA+ ESSAGIPNSAAALS G LCLYA QKS ASVKVRP V SLLVNLVRGA+PSSTFLRSPSVT +LSP+ E TSES *TLGDVVLAA A Subject 14743 GDT*NAISKDNLFKTALVRERISIFTTSLIPTPVSSTYFRVMNATSSFGSSLQK*AATFWRTRG*ANRMFDSTVSIKRFSAQSR*YNPVSTPHW*EAFAQCRSRVIVENTLIHSLVFKTPLSMSRNMSVDFFRMSSAS*GDTITLILTISFFAKRIDYRLSFS*YLLQTILHGTAMRPKEEIVSFEEGAQMSHRSTLSFTSEEKPKDTTSL*EKLHYAIRIVEFLKGRLAVILYGSRADNRMVIALKISR*ILTVATRHLSTS*HSQVTAN**FRQLNTSIRLDH*KHSIQIRA*QHERFRFFFVILHYITSLLPS*RRLLTGVFTTPPSVFRAYMLANIFLLCCNSESFGQVPRKSAAKYESSAGIPNSAAALSCGNLCLYAIQKST*ASVKVRPKVLSLLVNLVRGAHPSSTFLRSPSVTTTLLSPKRLEKITSESAR*TLGDVVLAASA 16098
Range 3: 14851 to 16104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
566.5 bits(1230) | 0.0 | 261/418(62%) | 0/418(0%) | Plus/Plus |
Query 121 *EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVTPA 1374 *EGA R+ TS+*VH* T N SHFH + *FL V AQ + QR +G++G*RF+ FSG + E L* AAKQK+VRE+VRS++*RW KYT QS *+GSYVME + SESLVLLRT NT+LLV+KSD V LPK+LICGYLRVS G+VT C RED+ +DFEG HHTVIRS TIQYD ES +E+N+S CVVKFFLETG VFWFFLRS+++GRA RHLRTFFEANNFFFGSHCGTME+CLKQVL ETES+IDSFCEERNR*DEG S+SL*S*RHS +++ ++ +HRQW Y GMY S+ D+N R L K + + +WV+S RLR*KT +RY RV+ STSRA EG S L*R*T R SGVH+AK+ T+GC + G KD +A S S K* V NG+L VTP+ Subject 14851 *EGARRVRTSH*VH**T*NLRSHFH*GLR*FLYRV*AQITATQRRSGIGNSG*RFILGCRFSGYLPEAL*IAAKQKDVREHVRSKN*RWSGKYTSEQSASAR*KGSYVMENYEEKSESLVLLRTNLNTMLLVVKSDASVELPKLLICGYLRVSGRGEVTCCNREDLTRDFEGNHHTVIRSRTIQYDSESAFEEFNNSDCVVKFFLETGSVFWFFLRSETKGRAVRHLRTFFEANNFFFGSHCGTMEYCLKQVLTETESIIDSFCEERNR*DEGYSVSL*S*RHSEKID*HITRHRQWGFKY*GMYQSVLDNNARPTLCKGFLPVGCGHWVVSARLR*KTFNRYGRVKHTVGSTSRAPEGSGSLL*R*TKRASGVHHAKVRGTHGCRNKGCGKDGNALSYQSSFK*IVFGNGVLRVTPS 16104
Range 4: 15464 to 16120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.2 bits(566) | 0.0 | 133/219(61%) | 0/219(0%) | Minus/Minus |
Query 734 LGVFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSL 1390 L +F G*H+K HF RQFI* C R H +LY +P TR+F++ SR+ERH*L FIFTK+ R+LLAHERLS + L ID FFSA+ALI PS++ PL+R C M S Y R++F+TFL I + TVYVS ++ QNVFSFIRR+Y+ HLNDFFL KKNRL TQF VPASNN PWYRNA QRRNC*LRRRCAN APL+ FG KT+R + SL Subject 15464 LSIFPRSG*HVKRHFQRQFI*NCSGKRAHFHLYHIPYSDTREFHVLSRDERH*LFWFIFTKVSRYLLAHERLSQPYV*LYRID*TFFSAIALIQPSVHTPLVRSLCTM*VSRYCREHFDTFLSI*NPTVYVS*YVSRFFQNVFSFIRRHYNPHLNDFFLRKKNRL*TQFQLVPASNNTPWYRNATQRRNC*LRRRCANVAPLYP*FHFGGKTKRHYQSL 16120
Range 5: 14850 to 15488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.0 bits(511) | 0.0 | 130/213(61%) | 0/213(0%) | Minus/Minus |
Query 120 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS* 758 NQKT PVSRKNFTTQ E L S DS SYC+V+ERITV * PSKS SSR VTSP DTRK P IS LG TL SDL T SIVF VRSSTSDS+F SIT*LP Y DC VYL HLQ ERT SRT FCFAA+QR S PEN NLQP P R* CA T +NQ *KCD F V **T**EV+ R+APS* Subject 14850 NQKTLPVSRKNFTTQSELLNSSKADSLSYCMVLERITVW*LPSKSLVKSSRLQHVTSPRPDTRK*PQISSLGSSTLASDLTTKSIVFKFVRSSTSDSDFSS*FSIT*LPFYLADADCSLVYLPLHLQFLERTCSRTSFCFAAIQRASGKYPENLQPSMNLQPEFPIPLRR*VAVICAYTRYKNQRKPQ*KCDRRF*VY**T**EVRTRRAPS* 15488
Range 6: 14898 to 16100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
364.9 bits(790) | 0.0 | 207/401(52%) | 0/401(0%) | Plus/Plus |
Query 168 NFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI*WQG*FT*DTNMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHP 1370 N E VALS + LI R ST +ST ++W +RLKI T +IFW R+SLNCSKAE+CSR CTL*+LKV *+H AI + V GKLC+G L + IA A H ++ S Q+* * * TN+R+ A + R D + ++RF G S + N T+ R+ *G+ L ++ RD * LLVF PK * SGA+FAHLLRS*QFLLW+ALRYHG LFEAGT+ N*V NRFFL RKKSLR* * LLMKLKTF + + ET*TV I RNV K R+* E I Q+ +G LG I+A ALKN *SI S+ LNLSCARR R+ FVKMN +S*WRS RE+ N RV G *R +C L Q+*INC KW F CHP Subject 14898 NLEPSVALSLRLTLIFVSRISTNYRNSTPQRNWEFRLKIHTWLQIFWVLARSSLNCSKAERCSRACTL*KLKVEW*IHQ*AICVS*VEGKLCNGELRRKI*IARAATHEFEYYAFSGQV*C*C*AA*TTNLRLLASVRTWRGDVLQP*GFNERF*GQSPYGYPL*NHTI*QRVCL*GIQQF*LRSEVFPRDW*CLLVFPPK*N*G*SGATFAHLLRS*QFLLWVALRYHGVLFEAGTN*N*VYNRFFLRRKKSLR*GL*CLLMKLKTF*KNRLTYYET*TVGF*ILRNVSKCSRQ*RETYIVQRLLTSGVWTLGCISAIALKNV*SIR*SQTYGWLNLSCARR*RLTFVKMNQKS*WRSSRESTWNSRVSE*GMW*RWKCALLPEQF*INCLWKWRFTCHP 16100
Range 7: 15564 to 16100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 106/179(59%) | 0/179(0%) | Minus/Minus |
Query 834 GVTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 1370 GVT K PF T+YL L E+A SL P + HP*V FA**TPL L VHLYK + PS AREVE + T YR VFQR+R D TQ + L N L L S+ L*YIP Y HCLC + ECLQLHKE L PSS*RFLSSQKESI DSVS+STCFKQ SMVPQCDP Subject 15564 GVTRKTPFPKTIYLKLLW*ESAFPSLPHPLFRHP*VPRTFA**TPLALLVHLYKSEPLPSGAREVEPTVCLTLPYRLNVFQRNRADTTQCPHPTGKKPLHNVGLALLSRTL*YIP*YLKPHCLCLVICQSIFSECLQLHKETL*PSS*RFLSSQKESIIDSVSVSTCFKQYSMVPQCDP 16100
Range 8: 14750 to 15364 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 97/205(47%) | 0/205(0%) | Minus/Minus |
Query 20 PRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRC 634 P+NL L S L A+ R LV * HQ * L C A AI+ P HNFP T L IA+ C Y+ TFS SVH REH SALLQFRE R +QKI +V IFSR Q VELR VL+R +IN+ ESAT SKF+SEPS+RC V+HLLK+ + + + +TVR+ H+ I LNFRR SRC Subject 14750 PQNLSLNPHGCNTSPLHVLTLASNRKLVV*AAQH*HQT*PLKA*YSNSCVAARAIQIFLRNSPLHNFPST*LTQIAHWCIYHSTFSF*SVHAREHLSALLQFRELRASTQKICSQV*IFSRNSQFRCGVELR*FVLIRDTKINVSLSESATEGSKFISEPSERCAPVEHLLKVTLRHYHVTLSKTVRKNHV*IGALNFRRRGSRC 15364
Range 1: 13585 to 13944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 41/120(34%) | 0/120(0%) | Plus/Plus |
Query 68 LFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLG 427 L SY + V D ++L+ L+ TNK+R R+F+ Y+ C + K+P+ +LGIP + SYL ADF+ C LSE++Q+ + ALK+ V +T +NL +LG Subject 13585 LTSYTLSGKKHVVNTRDFLELLNSLPQLSGKTNKIRVFCRSFSNQYLAVCREFGEKLPKQVRGTKLGIPTQYSYLQADFISDCAGLSEVEQAVLIKGKDIALKSAAVVGTTATTNLYELG 13944
Range 1: 13892 to 14188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 40/99(40%) | 0/99(0%) | Plus/Plus |
Query 86 GDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTE 382 G + + +T G+L L L NKLR RTF + YI Y+ K+P + A G+PAED YLAADF+ +L++LQQSR + A A TE Subject 13892 GGKELYLTHGELNSFLGSQKLLEGKPNKLRCFCRTFQKDYISLRKEYRGKLPPIARANRHGLPAEDHYLAADFISTSTELTDLQQSRLLLARENATHTE 14188
Range 1: 14003 to 14293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 45/97(46%) | 0/97(0%) | Plus/Plus |
Query 92 RTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTE 382 +T T+T G+L+ L+ L NKLR RTF + Y+DF Y+ + L A GIPAED YLAADFL P+L+ELQQ R + A A KTE Subject 14003 KTYTLTYGELRNFLNSQPVLATKPNKLRFFCRTFQKEYLDFAKRYRSDLQPLARANRYGIPAEDHYLAADFLTTSPELTELQQGRLLLARENATKTE 14293