Queries
Nucleotide Sequence (619 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
418.5 | 1348.2 | 15% | 4.024e-115 | 51% | JX559641.1 | |
412.1 | 1426.2 | 27% | 3.411e-113 | 47% | DQ787959.1 | |
408.4 | 1441.4 | 26% | 4.358e-112 | 41% | DQ855088.1 | |
373.1 | 913.3 | 39% | 1.808e-101 | 39% | AF007415.2 | |
373.1 | 913.3 | 39% | 1.808e-101 | 39% | AY244516.1 |
Alignments
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 7
Range 1: 2726 to 3259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
418.5 bits(907) | 0.0 | 168/178(94%) | 0/178(0%) | Plus/Plus |
Query 85 VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK 618 VDK KADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEP+EVLTSFGFAGSGKSHWCQTILRSC+VEKTL+ISPRKVLKDDWVGKISK+HKVVTFEVAFMDDFGCKAIVIDEIGLLPPGY+DLVISVFRPSTL+LLGDPLQSSYHSKRDNV+LEASQED+FSR+KGALPYLCYSHRLPK Subject 2726 VDKAKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPVEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFRPSTLVLLGDPLQSSYHSKRDNVVLEASQEDVFSRIKGALPYLCYSHRLPK 3259
Range 2: 2770 to 3045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.8 bits(410) | 0.0 | 80/92(87%) | 0/92(0%) | Minus/Minus |
Query 129 MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP 404 +ALHPKSSM ATSNVTTLC EIFPTQSS STFLGLM +VFSTSQLRSMV HQ*LFPDPAKPKEV+TS GSSNSAECIFPLLYFP+ TPVHP Subject 2770 IALHPKSSMNATSNVTTLCFFEIFPTQSSFSTFLGLMISVFSTSQLRSMVWHQ*LFPDPAKPKEVSTSTGSSNSAECIFPLLYFPKRTPVHP 3045
Range 3: 3088 to 3258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 41/57(72%) | 0/57(0%) | Minus/Minus |
Query 447 FGNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK 617 FG+L E*QR GSAPF L K SS LASR TLS LL EL* GSP+R+RVLGRKTE+T+ Subject 3088 FGSL*E*QRYGSAPFILLKTSS*LASRTTLSLLLW*EL*SGSPNRTRVLGRKTEITR 3258
Range 4: 2726 to 3259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.8 bits(456) | 0.0 | 96/178(54%) | 0/178(0%) | Minus/Minus |
Query 85 LW*PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH 618 LW* V +AE+ + ED+LL L DH++ FA++ LK + QS W ED D ++Y+AG S LI +Y P++IHE +LE ++LV L DL PIIL HLS TND*CF N TTPEYGL PVTFSGPGETKRGQYL+ FLQFSRMHL +VF ++ A T++AL + I VH Subject 2726 LW*SVRIAEIR*RPFYSAEDILLTSLQDHVVSFAVVRALKRVP*QNQSAWTED*DHKIYVAGG*QSDLIDDYRLAPKVIHECNLERHNLVLL*DLSDPIIL*HLSWTND*CFFNITTPEYGLAPVTFSGPGETKRGQYLNWFLQFSRMHLPFIVFSQENPSAPTIKALCQSIRFGFVH 3259
Range 5: 2712 to 3260 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 93/183(51%) | 0/183(0%) | Plus/Plus |
Query 71 RRVTTWTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVKP*L*MR*DYSRPAM*TWSSLSSAQVLCFYWAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR 619 R + WT+ ++I +A V A + NT + RCILLNWRN+ RY*PLLVSPGPEKVTG KPYSGVV L+KH*SLV ERC RMIG RS R TR SR SWM G + * MR D PA * S SS Q L F F+ A S R +R SS *+ + SA T YQR Subject 2712 RASSGWTKPKRIDWHKAFIVGALGFSWENTIKGRCILLNWRNQLRY*PLLVSPGPEKVTGAKPYSGVVMLKKH*SLVQERC*RMIGSERSQRSTRL*RSRLHSWMTLGARR*SSMRSDCYPPAT*IL*SQSSVQALWFC*GTRFKALTTAKETTWSWRLVRRMSSAE*KGRYRISAILTDYQR 3260
Range 6: 2728 to 3258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.3 bits(350) | 0.0 | 90/177(51%) | 0/177(0%) | Plus/Plus |
Query 87 GQDQGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFIS*QTG*CDPRGQPRGHLL*GEGRTSLPLLLTQVTK 617 GQ Q * +LL W+H + +IQ +DAFC*IGGT G DLFWFRRVRKKSLV NHTPEL* *+N +H*S KGA+G*LG +DL EAQG +RG HG* V S+R*DR RL R L LP K+S S S+ + Q P G G L + ++ LL +Q TK Subject 2728 GQSQSG*IGTKLL*WVHWGSLGKIQ*REDAFC*IGGTS*GTDLFWFRRVRKKSLVPNHTPEL*C*KNTNH*SKKGAKG*LGRKDLKEAQGCDVRGCIHG*LWVQGDSHR*DRIATPRLHRSCDLSLPSKHSGSVRGPASKLLPQQKRQRGPGG*SGGCLQQNKRGATVSLLFSQTTK 3258
Range 7: 2727 to 2966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 51/80(64%) | 0/80(0%) | Minus/Minus |
Query 86 NHP*APF*D**LMFSQLHNSGVWFDTSDFFRTRRNQKRSIPRSVPPIQQNASFPCCISQEVHLCIHCRSSARAYLP*SCP 325 NHP APF D**L+F Q HNSGVWF TSDFFRTRRNQKRS+P+ VPPIQQNAS CI C H +S Y CP Subject 2727 NHPLAPFLD**LVFFQHHNSGVWFGTSDFFRTRRNQKRSVPQLVPPIQQNASSLYCIFPREPQCTHYKSFVPIYPLWLCP 2966
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 8
Range 1: 2740 to 3273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
412.1 bits(893) | 0.0 | 166/178(93%) | 0/178(0%) | Plus/Plus |
Query 85 VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK 618 VDK KADRLAQSFYSGCTGVLLGKYNKGKMH+AEL+EP EVLTSFGFAGSGKSHWCQTILRSC+VEKTL+ISPRKVLKDDWVGKISK+HKVVTFEVAFMDDFGCKAIVIDEIGLLPPGY+DLVISVF PSTL+LLGDPLQSSYHSKRDNVILEASQED+FSR+KGALPYLCYSHRLPK Subject 2740 VDKAKADRLAQSFYSGCTGVLLGKYNKGKMHAAELDEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPSTLVLLGDPLQSSYHSKRDNVILEASQEDVFSRIKGALPYLCYSHRLPK 3273
Range 2: 2784 to 3059 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 83/92(90%) | 0/92(0%) | Minus/Minus |
Query 129 MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP 404 MALHPKSS+ ATS VTTLC LEIFPTQSSLSTFLGL+ VFSTSQLRSMV*HQ*LFPDPAKPKEVNTS+GSSNSA CIFPLLYFPRSTPVHP Subject 2784 MALHPKSSINATSKVTTLCFLEIFPTQSSLSTFLGLIIKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRSTPVHP 3059
Range 3: 3102 to 3269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 39/56(70%) | 0/56(0%) | Minus/Minus |
Query 447 GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK 614 G+LCE*QR*G+APF L K SS LASRITLS LL EL* GSPS ++VLG TE+T+ Subject 3102 GSLCE*QR*GNAPFILLKTSS*LASRITLSLLLW*EL*SGSPSSTKVLGWNTEITR 3269
Range 4: 2743 to 3264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 96/174(55%) | 0/174(0%) | Minus/Minus |
Query 88 PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLV 609 P+*VAE+G+ L+P ED+LL L +HII FA++ LK I * W E D Q+ I E SYLI +YG T EIIH+ D + +HLV LRDL +P++LEH RT + FL+ TTPEYGLTPVTFSGPGETK QY F+QFSR+HLS +V +K+TCA VEAL IC L+ Subject 2743 PM*VAEIGQRTLYPAEDILLTCLQNHIISFAVVRALKWIP**Y*GAWVEY*DHQINITWWEQSYLIDDYGLTSEIIHKCDFKGHHLVLLRDLSYPVVLEHFPRTYNQSFLDITTPEYGLTPVTFSGPGETKGSQYFSWFIQFSRVHLSFIVLSQKHTCAPAVEALS*SICFGLI 3264
Range 5: 2751 to 3260 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 94/170(55%) | 0/170(0%) | Plus/Plus |
Query 96 QGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFIS*QTG*CDPRGQPRGHLL*GEGRTSLPLLLT 605 Q R* ++LLQ +HRC S ++Q KDA *IG T+ ID WFRRVRKKSLVSNHTPEL* EN + S*+ AQG LG +DL*EAQGG + R +G*FR+* HS+R*DRT P RL G L +PPK+ ++T S S+ + Q *CD G+ RG L +G +L LLLT Subject 2751 QSR*TSSKLLQRVHRCASGKVQ*RKDARG*IG*TN*SIDFLWFRRVRKKSLVSNHTPEL*CRENFDYKS*ESAQGRLGRKDL*EAQGGDL*SRIYG*FRM*GHSHR*DRTAPTRLY*SGDLSIPPKHLSTTRGSTSKLLPQQKR*CDSGGKSRGCLQQDKGCVALSLLLT 3260
Range 6: 2747 to 3274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 94/176(53%) | 0/176(0%) | Plus/Plus |
Query 92 RSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVKP*L*MR*DYSRPAM*TWSSLSSAQVLCFYWAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR 619 R +QI +AST AQV F +T +ERC LNW N+ +Y* LVSPGPEKVTGVKPYSGVV RK * VL +CSR G RSLR TRW +S WMIS V+P* MR*D S + W S S Q +Y I F+ A IM* R KR SS G*R P SATH G R Subject 2747 RPKQID*LKASTAGAQVCFWESTIKERCTRLNWMNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKL*L*VLGKCSRTTG*ERSLRSTRW*PLKSHLWMISDVRP*SSMR*DCSHQVILIW*SQYSTQAP*YY*GIHFKALTTAKEIM*FWRQVKRMSSAG*RVRCPISATHIGCPR 3274
Range 7: 2756 to 2980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 46/75(61%) | 0/75(0%) | Minus/Minus |
Query 101 NHP*APF*D**LMFSQLHNSGVWFDTSDFFRTRRNQKRSIPRSVPPIQQNASFPCCISQEVHLCIHCRSSARAYL 325 + P*A *D * FS+ HNSGVWFDTSDFFRTRRNQ++SI + V PIQ ASF C E HLC CRS YL Subject 2756 SRP*ALS*DL*SKFSRHHNSGVWFDTSDFFRTRRNQRKSILQLVHPIQPRASFLYCTFPEAHLCTRCRSFELVYL 2980
Range 8: 3032 to 3259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 36/76(47%) | 0/76(0%) | Minus/Minus |
Query 377 VSSRGREVRPSP*RRCPLGWPLGSHYPVCYDMNSEGDRPVEAEYLGGRQR*PSLHSRAGVVLSHL*LWLYTRNHP* 604 VSSR R P R PL P SHY C + E D V LGG R P ++ G VLSH *LW Y RNHP* Subject 3032 VSSRDRATHPLSC*RHPLDLPPESHYLFCCGKSFEVDPLVVLRCLGGILRSPDQYNLVGAVLSHR*LWPYIRNHP* 3259
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 8
Range 1: 2740 to 3273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
408.4 bits(885) | 0.0 | 165/178(93%) | 0/178(0%) | Plus/Plus |
Query 85 VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK 618 VDK+KADRLAQSFYSGCTGVLLGKYNKGKMH+AELEEP EVLTSFGFAGSGKSHWCQTILRSC+VEKTLVISPRKVLKDDW GKISK+HKVVTFEVAFMDDFGCKAIVIDEIGLLPPGY+DLVISVF P+TL+LLGDPLQSSYHSKRDNVILEASQEDIF+R+KGALPYLCYSHR PK Subject 2740 VDKVKADRLAQSFYSGCTGVLLGKYNKGKMHAAELEEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLVISPRKVLKDDWAGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPNTLVLLGDPLQSSYHSKRDNVILEASQEDIFNRIKGALPYLCYSHRPPK 3273
Range 2: 2784 to 3059 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.2 bits(424) | 0.0 | 83/92(90%) | 0/92(0%) | Minus/Minus |
Query 129 MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP 404 MALHPKSSM ATS VTTLC EIFP QSSLSTFLGL+T VFSTSQLRSMV*HQ*LFPDPAKPKEVNTS+GSSNSA CIFPLLYFPRSTPVHP Subject 2784 MALHPKSSMNATSKVTTLCFFEIFPAQSSLSTFLGLITKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRSTPVHP 3059
Range 3: 3102 to 3269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 41/56(73%) | 0/56(0%) | Minus/Minus |
Query 447 GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK 614 G LCE*QR*G+APF L K+SSWLASRITLSRLL EL* GSPS ++V G TEMT+ Subject 3102 GGLCE*QR*GNAPFILLKISSWLASRITLSRLLW*EL*SGSPSSTKVFGWNTEMTR 3269
Range 4: 2743 to 3264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 97/174(56%) | 0/174(0%) | Minus/Minus |
Query 88 PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLV 609 P+ VAE+ C L+ ED+LLA DHI+ FA++ LK I * W E DDQ+ + E SYL+ + G T E++HE D + ++LV L DLP P+ILEHL RT + FL+ TTPEYGLTPVTFSGPGETK QY FLQFSRMHL VV +KYTCA TVEAL I DLV Subject 2743 PMRVAEIR*CTLYSVEDILLACFQDHIVSFAVVRALKWIT**Y*GVWMEH*DDQINVTRWEQSYLVDDNGLTSEVVHERDFKGHYLVLL*DLPCPVILEHLPRTYNQGFLDITTPEYGLTPVTFSGPGETKGSQYFSWFLQFSRMHLPFVVLSQKYTCAPTVEALS*SISFDLV 3264
Range 5: 2745 to 3257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 94/171(55%) | 0/171(0%) | Plus/Plus |
Query 90 QDQGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFIS*QTG*CDPRGQPRGHLL*GEGRTSLPLLL 602 Q Q * ++LLQW+HRCTS ++QQ +DA *IGGT+ ID WFRRVRKKSLVSNHTPEL* EN+ + S*+GAQG*LG EDL EAQG + R HG R+* H +R DRT P L GHL +P K+ ++T S S+ + QT CDP +PRG+L +G +L LLL Subject 2745 QGQS**TSSKLLQWVHRCTSGKVQQREDACG*IGGTN*SIDFLWFRRVRKKSLVSNHTPEL*CRENLGYKS*EGAQG*LGREDLKEAQGSDL*SRVHGRLRM*GHCHRRDRTAPTWLH*SGHLSVPSKHLSTTR*STSKLLPQQTRQCDPGSKPRGYLQQNKGCITLSLLL 3257
Range 6: 2744 to 3274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 95/177(54%) | 0/177(0%) | Plus/Plus |
Query 89 TRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVKP*L*MR*DYSRPAM*TWSSLSSAQVLCFYWAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR 619 TRS+ I +ASTV AQVYF +TT+ RC+ LNWRN+ +Y* LVSPGPEKVTGVKPYSGVV RK VL RCSRM G GRS R TR +S SW S V+P R*D S WSS S Q +Y I F+ AN M*S + AKR SS *R H+ SAT G R Subject 2744 TRSKLID*LKASTVGAQVYFWESTTKGRCMRLNWRNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKPWL*VLGRCSRMTGQGRSQRSTR**PLKSRSWTTSDVRPLSSTR*DCSHLVTLIWSSQCSIQTP*YY*VIHFKALTTANETM*SWKQAKRISSTE*RVHYLISATRIGRPR 3274
Range 7: 2744 to 2980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 52/79(66%) | 0/79(0%) | Minus/Minus |
Query 89 NHP*APF*D**LMFSQLHNSGVWFDTSDFFRTRRNQKRSIPRSVPPIQQNASFPCCISQEVHLCIHCRSSARAYLP*SC 325 +HP*AP *D * FS+ HNSGVWFDTSDFFRTRRNQ++SI + VPPIQ +AS CC EVHLC HCRS Y * C Subject 2744 SHP*APS*DL*PRFSRHHNSGVWFDTSDFFRTRRNQRKSILQLVPPIQPHASSLCCTFPEVHLCTHCRSFELVYQL*PC 2980
Range 8: 3032 to 3256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 31/75(41%) | 0/75(0%) | Minus/Minus |
Query 377 SSRGREVRPSP*RRCPLGWPLGSHYPVCYDMNSEGDRPVEAEYLGGRQR*PSLHSRAGVVLSHL*LWLYTRNHP* 601 SSR + + P R PLG GSH VC + E D V L G R*P ++ G VLS * W Y R+ P* Subject 3032 SSRDKVMHPLFC*RYPLGLLPGSHCLVCCGKSFEVDHLVVLRCLDGTLR*PDQCNQVGAVLSRR*QWPYIRSRP* 3256
Grapevine virus A isolate PA3, complete genome
Sequence ID: AF007415.2 Length: 7351 Number of Matches: 7
Range 1: 2730 to 3263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
373.1 bits(808) | 0.0 | 150/178(84%) | 0/178(0%) | Plus/Plus |
Query 85 VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK 618 VDK KADRLAQSFY+G TGVLLGKYNKGKMHS ++EP EVLT+FGFAGSGKSHWCQTIL+ C VEK LVISPRKVLKDDW KISKRHKVVTFEVAFMDD+GCK +VIDEIGLLPPGY+DLVI+V RP TL+LLGDPLQS+YHSKRDNV+LEASQEDIF+R+KG LPYLCYSHRLPK Subject 2730 VDKNKADRLAQSFYNGNTGVLLGKYNKGKMHSEGIDEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVVIDEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQSTYHSKRDNVVLEASQEDIFARIKGQLPYLCYSHRLPK 3263
Range 2: 2774 to 3262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 112/163(69%) | 0/163(0%) | Minus/Minus |
Query 129 FGNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTKXXXXXXXXXXXXXTMALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP 617 FG+ E*QR GS P L KMSS LAS+ TLSRLL L GSP + V G T MTKS PGGS+PISSIT +L P SSMKATSNVTTLCL EIF QSSLSTF GL+T FST Q SMV*HQ*LFP+PA PK V+TS GSS +ECI PLLYFPRSTPV P Subject 2774 FGSRWE*QRYGSCPLILAKMSS*LASKTTLSRLLW*VLCSGSPRSTSVRGLCTAMTKSMYPGGSNPISSITTSLQP*SSMKATSNVTTLCLFEIFEVQSSLSTFRGLITRAFSTEQCLSMV*HQ*LFPEPANPKAVSTSFGSSMPSECILPLLYFPRSTPVFP 3262
Range 3: 2730 to 3263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 69/178(39%) | 0/178(0%) | Minus/Minus |
Query 85 LW*PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH 618 LW PV VAEV P +DVLL GL D+++ A++ L+ I Q Q TW+ +D + + R L+ N+ IIHES LEC+H VPL DL P++ E+L ++ FL T +YGLTPVTF +++ G++L F+ +HL+ +V +K+ C VE L + + L VH Subject 2730 LWEPVGVAEVW*LPFDPGKDVLLTGLQDYVVTLAVVGALQWIPQEHQCTWSMHSND*IDVPRR*QPDLVDNHILAAIIIHESHLECHHFVPL*DL*GPVVFEYLPWADNEGFLYGTVFKYGLTPVTFP*TCKSESGEHLLWFIYAL*VHLAFIVLSQKHPCVPVVETLGKAVSLIFVH 3263
Range 4: 2731 to 3045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 42/105(40%) | 0/105(0%) | Plus/Plus |
Query 86 WTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVK 400 WT+ R + ST Q F +T + RC N+ R PL KVTGVKPY V RK R S+ G RS RGT+W HSR LSWMI + Subject 2731 WTKIRLTALPKVSTTGTQGCFWESTIKARCTQRA*MNQRRCSPLSDLQVQGKVTGVKPYLNTVP*RKPSLSAHGRYSKTTGPQRSQRGTKW*HSRWLSWMIMAAR 3045
Range 5: 3133 to 3264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 20/44(45%) | 0/44(0%) | Plus/Plus |
Query 488 WAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR 619 W I + A+ *S RP KRTS G + + TSAT TG QR Subject 3133 WGIHCKAPTTASVTT*SWRPVKRTSLPGSKGSYHTSATPTGSQR 3264
Range 6: 2840 to 3157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 41/106(39%) | 0/106(0%) | Plus/Plus |
Query 195 TDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFI 512 T G F R R+KSLVSNHT L E+ + +G Q L +DL EAQ G IRG FHG* + YR DR + + R H C Y+ + G S ++ + Subject 2840 TKGGAHRFRICRFREKSLVSNHT*TLFRRESPRYQPTEGTQRRLDLKDLKEAQSGDIRGGFHG*LWLQGCGYRRDRVATSWVHRFSHCCA*TTYTGAPGGSTAKHL 3157
Grapevine virus A, complete genome
Sequence ID: AY244516.1 Length: 7378 Number of Matches: 7
Range 1: 2727 to 3260 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
373.1 bits(808) | 0.0 | 150/178(84%) | 0/178(0%) | Plus/Plus |
Query 85 VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK 618 VDK KADRLAQSFY+G TGVLLGKYNKGKMHS ++EP EVLT+FGFAGSGKSHWCQTIL+ C VEK LVISPRKVLKDDW KISKRHKVVTFEVAFMDD+GCK +VIDEIGLLPPGY+DLVI+V RP TL+LLGDPLQS+YHSKRDNV+LEASQEDIF+R+KG LPYLCYSHRLPK Subject 2727 VDKNKADRLAQSFYNGNTGVLLGKYNKGKMHSEGIDEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVVIDEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQSTYHSKRDNVVLEASQEDIFARIKGQLPYLCYSHRLPK 3260
Range 2: 2771 to 3259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 112/163(69%) | 0/163(0%) | Minus/Minus |
Query 129 FGNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTKXXXXXXXXXXXXXTMALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP 617 FG+ E*QR GS P L KMSS LAS+ TLSRLL L GSP + V G T MTKS PGGS+PISSIT +L P SSMKATSNVTTLCL EIF QSSLSTF GL+T FST Q SMV*HQ*LFP+PA PK V+TS GSS +ECI PLLYFPRSTPV P Subject 2771 FGSRWE*QRYGSCPLILAKMSS*LASKTTLSRLLW*VLCSGSPRSTSVRGLCTAMTKSMYPGGSNPISSITTSLQP*SSMKATSNVTTLCLFEIFEVQSSLSTFRGLITRAFSTEQCLSMV*HQ*LFPEPANPKAVSTSFGSSMPSECILPLLYFPRSTPVFP 3259
Range 3: 2727 to 3260 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 69/178(39%) | 0/178(0%) | Minus/Minus |
Query 85 LW*PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH 618 LW PV VAEV P +DVLL GL D+++ A++ L+ I Q Q TW+ +D + + R L+ N+ IIHES LEC+H VPL DL P++ E+L ++ FL T +YGLTPVTF +++ G++L F+ +HL+ +V +K+ C VE L + + L VH Subject 2727 LWEPVGVAEVW*LPFDPGKDVLLTGLQDYVVTLAVVGALQWIPQEHQCTWSMHSND*IDVPRR*QPDLVDNHILAAIIIHESHLECHHFVPL*DL*GPVVFEYLPWADNEGFLYGTVFKYGLTPVTFP*TCKSESGEHLLWFIYAL*VHLAFIVLSQKHPCVPVVETLGKAVSLIFVH 3260
Range 4: 2728 to 3042 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 42/105(40%) | 0/105(0%) | Plus/Plus |
Query 86 WTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVK 400 WT+ R + ST Q F +T + RC N+ R PL KVTGVKPY V RK R S+ G RS RGT+W HSR LSWMI + Subject 2728 WTKIRLTALPKVSTTGTQGCFWESTIKARCTQRA*MNQRRCSPLSDLQVQGKVTGVKPYLNTVP*RKPSLSAHGRYSKTTGPQRSQRGTKW*HSRWLSWMIMAAR 3042
Range 5: 3130 to 3261 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 20/44(45%) | 0/44(0%) | Plus/Plus |
Query 488 WAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR 619 W I + A+ *S RP KRTS G + + TSAT TG QR Subject 3130 WGIHCKAPTTASVTT*SWRPVKRTSLPGSKGSYHTSATPTGSQR 3261
Range 6: 2837 to 3154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 41/106(39%) | 0/106(0%) | Plus/Plus |
Query 195 TDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFI 512 T G F R R+KSLVSNHT L E+ + +G Q L +DL EAQ G IRG FHG* + YR DR + + R H C Y+ + G S ++ + Subject 2837 TKGGAHRFRICRFREKSLVSNHT*TLFRRESPRYQPTEGTQRRLDLKDLKEAQSGDIRGGFHG*LWLQGCGYRRDRVATSWVHRFSHCCA*TTYTGAPGGSTAKHL 3154
Nucleotide Sequence (342 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
177.5 | 769.8 | 24% | 5.78e-43 | 67% | KF013689.1 | |
176.1 | 727.6 | 22% | 1.474e-42 | 62% | KF013731.1 | |
176.1 | 739.5 | 22% | 1.474e-42 | 64% | KF013737.1 | |
177.5 | 776.7 | 24% | 5.78e-43 | 68% | KF013687.1 | |
176.1 | 759.7 | 24% | 1.499e-42 | 67% | KF013685.1 |
Alignments
Grapevine virus A clone HHCS3 16 RNA dependent RNA polymerase (RdRP) gene, partial cds
Sequence ID: KF013689.1 Length: 750 Number of Matches: 6
Range 1: 394 to 612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 72/73(99%) | 0/73(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 310 AFDRSQDEKILDME+EVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH Subject 394 AFDRSQDEKILDMEIEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 612
Range 2: 397 to 615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 52/73(71%) | 0/73(0%) | Minus/Minus |
Query 95 RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK 313 ++VPH E+H+ Q VEEEGSEFTREPHY QITQSTAHHQLE LVFLDHFL PK++IE+F+LHI+Y L+L S++ Subject 397 QMVPHATEYHITQSVEEEGSEFTREPHYSQITQSTAHHQLERLVFLDHFLGPKKKIEYFDLHIQYFLVLRSIE 615
Range 3: 390 to 611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 66/74(89%) | 0/74(0%) | Minus/Minus |
Query 88 WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKAI 309 WYL+QLNT+LLRVLKKKVPNSPENLI+A+SPRALPII+LSVSYSLIISSGQRKKLSTS SISSIFSSCD SKA+ Subject 390 WYLMQLNTILLRVLKKKVPNSPENLIIARSPRALPIISLSVSYSLIISSGQRKKLSTSISISSIFSSCDRSKAL 611
Range 4: 417 to 611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 48/65(74%) | 0/65(0%) | Plus/Plus |
Query 115 EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP 309 E+T YG S QF LA GNDQGIRD Q DDGQCSG* G+NEVLW*IRNLLLQH E +G+QL+EVP Subject 417 ENTGYGDRSTQFFSLARGNDQGIRDAQADDGQCSG*SGYNEVLW*IRNLLLQHSE*YGIQLHEVP 611
Range 5: 392 to 610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 49/73(67%) | 0/73(0%) | Minus/Minus |
Query 90 GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 308 GTS +* P S C*RRRFRIHQRTSL P+HPEHCPSS * SRIP*SFP+AK +N* L+ PY V S I ++P Subject 392 GTSCN*IPYYSEC*RRRFRIHQRTSL*PDHPEHCPSSA*ASRIP*SFPRAKEKN*VLRSPYPVFSRLAIDRKP 610
Range 6: 404 to 610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 51/69(74%) | 0/69(0%) | Plus/Plus |
Query 102 DHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GT 308 D + R+Y IWR K SI FG RK*SRNTR SS**WAVLWVIW **GSLVNSEPSSST * W S *GT Subject 404 DRKTRKYWIWRSKYSIFFFGPRK*SRNTRRSS**WAVLWVIWL**GSLVNSEPSSSTL*VIWYSVA*GT 610
Grapevine virus A clone LVCS92 06_4c RNA dependent RNA polymerase (RdRP) gene, partial cds
Sequence ID: KF013731.1 Length: 750 Number of Matches: 6
Range 1: 394 to 612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 71/73(97%) | 0/73(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 310 AFDRSQDEKILDME+EVLNFFLWPEEMI+EYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH Subject 394 AFDRSQDEKILDMEIEVLNFFLWPEEMIREYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 612
Range 2: 394 to 615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 46/74(62%) | 0/74(0%) | Minus/Minus |
Query 92 RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVKG 313 +++PH AE H+A GV+EEG EF EPHYGQ+TQSTAHHQ E V HFL P EEIEH H++YLLIL +KG Subject 394 QMIPHAAEDHIA*GVKEEGPEFAGEPHYGQVTQSTAHHQFERFVLPYHFLGP*EEIEHLYFHVQYLLILGPIKG 615
Range 3: 393 to 608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 64/72(89%) | 0/72(0%) | Minus/Minus |
Query 91 YLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA 306 YL+QL T+LLRVLKKKVPNSPENLIMAKSP+ALPIINLSVSYSLIISSG RKKLSTS S+SSIFSS DLSKA Subject 393 YLMQLKTILLRVLKKKVPNSPENLIMAKSPKALPIINLSVSYSLIISSGHRKKLSTSISMSSIFSSWDLSKA 608
Range 4: 393 to 608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 47/72(65%) | 0/72(0%) | Plus/Plus |
Query 91 GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEV 306 GL* + G*EDT +G AQFLP+A GND+G+R+ Q+DDGQC G* GHNEVL IR+LLL HP+Q+G+QL+EV Subject 393 GL**VPG*EDTGHGNRGAQFLPMARGNDKGVRNAQIDDGQCFG*LGHNEVLRRIRDLLL*HPKQYGLQLHEV 608
Range 5: 392 to 607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 48/72(67%) | 0/72(0%) | Minus/Minus |
Query 90 TSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 305 TS S* P C GC*RRR RI +RTSLWP+HP+HCPSS * R P SFP+A GRN*A P VSSHP QRP Subject 392 TSCS*RPYCLGC*RRRSRIRRRTSLWPSHPKHCPSSI*AFRTPLSFPRAIGRN*APLFPCPVSSHPGTYQRP 607
Range 6: 395 to 607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 47/71(66%) | 0/71(0%) | Plus/Plus |
Query 93 PLTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*G 305 PL RMRRY W+ +CSISS+G RK* +T+ S+**WAVLWV WP**GS NS PSS TP*A W SA *G Subject 395 PLIGPRMRRYWTWK*RCSISSYGPRK**GSTKRSN**WAVLWVTWP**GSPANSGPSSLTP*AIWSSAA*G 607
Grapevine virus A clone LVCS92 06 11 RNA dependent RNA polymerase (RdRP) gene, partial cds
Sequence ID: KF013737.1 Length: 750 Number of Matches: 6
Range 1: 394 to 612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 71/73(97%) | 0/73(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 310 AFDRSQDEKILDME+EVLNFFLWPEEMI+EYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH Subject 394 AFDRSQDEKILDMEIEVLNFFLWPEEMIREYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 612
Range 2: 394 to 615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 47/74(64%) | 0/74(0%) | Minus/Minus |
Query 92 RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVKG 313 +++PH AE H+A GV+EEG EF EPHYGQ+TQSTAHHQ E V HFL P EEIEH H++YLLIL SV+G Subject 394 QMIPHAAEDHIA*GVKEEGPEFAGEPHYGQVTQSTAHHQFERFVLPYHFLGP*EEIEHLYFHVQYLLILGSVEG 615
Range 3: 393 to 608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 64/72(89%) | 0/72(0%) | Minus/Minus |
Query 91 YLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA 306 YL+QL T+LLRVLKKKVPNSPENLIMAKSP+ALPIINLSVSYSLIISSG RKKLSTS S+SSIFSS DLSKA Subject 393 YLMQLKTILLRVLKKKVPNSPENLIMAKSPKALPIINLSVSYSLIISSGHRKKLSTSISMSSIFSSWDLSKA 608
Range 4: 393 to 608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 48/72(67%) | 0/72(0%) | Plus/Plus |
Query 91 GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEV 306 GL QI G*EDT +G AQFLP+A GND+G+R+ Q+DDGQC G* GHNEVL IR+LLL HP+Q+G+QL+EV Subject 393 GLRQIPG*EDTGHGNRGAQFLPMARGNDKGVRNAQIDDGQCFG*LGHNEVLRRIRDLLL*HPKQYGLQLHEV 608
Range 5: 392 to 607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 49/72(68%) | 0/72(0%) | Minus/Minus |
Query 90 TSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 305 TS S* P C GC*RRR RI +RTSLWP+HP+HCPSS * R P SFP+A GRN*A P VSSHP IC+RP Subject 392 TSCS*RPYCLGC*RRRSRIRRRTSLWPSHPKHCPSSI*AFRTPLSFPRAIGRN*APLFPCPVSSHPGICRRP 607
Range 6: 395 to 607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 48/71(68%) | 0/71(0%) | Plus/Plus |
Query 93 PLTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*G 305 P TD RMRRY W+ +CSISS+G RK* +T+ S+**WAVLWV WP**GS NS PSS TP*A W SA *G Subject 395 PSTDPRMRRYWTWK*RCSISSYGPRK**GSTKRSN**WAVLWVTWP**GSPANSGPSSLTP*AIWSSAA*G 607
Grapevine virus A clone HHCS2_3c RNA dependent RNA polymerase (RdRP) gene, partial cds
Sequence ID: KF013687.1 Length: 750 Number of Matches: 6
Range 1: 394 to 612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 72/73(99%) | 0/73(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 310 AFDRSQDEKILDME+EVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH Subject 394 AFDRSQDEKILDMEIEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 612
Range 2: 397 to 615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 53/73(73%) | 0/73(0%) | Minus/Minus |
Query 95 RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK 313 ++VPH E+H+ Q VEEEGSEFTREPHY QITQSTAHHQLE LVFLDHFL PK+EIE+F+LHI+Y L+L S++ Subject 397 QMVPHATEYHITQSVEEEGSEFTREPHYSQITQSTAHHQLERLVFLDHFLGPKKEIEYFDLHIQYFLVLRSIE 615
Range 3: 393 to 611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 66/73(90%) | 0/73(0%) | Minus/Minus |
Query 91 WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA 309 WYL+QLNT+LLRVLKKKVPNSPENLI+A+SPRALPII+LSVSYSLIISSGQRKKLSTS SISSIFSSCD SKA Subject 393 WYLMQLNTILLRVLKKKVPNSPENLIIARSPRALPIISLSVSYSLIISSGQRKKLSTSISISSIFSSCDRSKA 611
Range 4: 417 to 611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 49/65(75%) | 0/65(0%) | Plus/Plus |
Query 115 EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP 309 E+T YG S QFL LA GNDQGIRD Q DDGQCSG* G+NEVLW*IRNLLLQH E +G+QL+EVP Subject 417 ENTGYGDRSTQFLSLARGNDQGIRDAQADDGQCSG*SGYNEVLW*IRNLLLQHSE*YGIQLHEVP 611
Range 5: 392 to 610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 50/73(68%) | 0/73(0%) | Minus/Minus |
Query 90 GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 308 GTS +* P S C*RRRFRIHQRTSL P+HPEHCPSS * SRIP*SFP+AK RN* L+ PY V S I ++P Subject 392 GTSCN*IPYYSEC*RRRFRIHQRTSL*PDHPEHCPSSA*ASRIP*SFPRAKERN*VLRSPYPVFSRLAIDRKP 610
Range 6: 404 to 610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 52/69(75%) | 0/69(0%) | Plus/Plus |
Query 102 DHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GT 308 D + R+Y IWR K SIS FG RK*SRNTR SS**WAVLWVIW **GSLVNSEPSSST * W S *GT Subject 404 DRKTRKYWIWRSKYSISFFGPRK*SRNTRRSS**WAVLWVIWL**GSLVNSEPSSSTL*VIWYSVA*GT 610
Grapevine virus A clone HHCS1_3c RNA dependent RNA polymerase (RdRP) gene, partial cds
Sequence ID: KF013685.1 Length: 750 Number of Matches: 6
Range 1: 394 to 612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 71/73(97%) | 0/73(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 310 AFDRSQDEKILDME+EVLNFFLWPEEMI+EYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH Subject 394 AFDRSQDEKILDMEIEVLNFFLWPEEMIREYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 612
Range 2: 397 to 615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 51/73(70%) | 0/73(0%) | Minus/Minus |
Query 95 RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK 313 ++VPH E+H+ Q VEEEGSEFTREPHY QITQSTAHHQLE LVF DHFL PK+EIE+ +LHI+Y L+L S++ Subject 397 QMVPHATEYHITQSVEEEGSEFTREPHYSQITQSTAHHQLERLVFPDHFLGPKKEIEYLDLHIQYFLVLRSIE 615
Range 3: 393 to 611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 66/73(90%) | 0/73(0%) | Minus/Minus |
Query 91 WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA 309 WYL+QLNT+LLRVLKKKVPNSPENLI+A+SPRALPII+LSVSYSLIISSGQRKKLSTS SISSIFSSCD SKA Subject 393 WYLMQLNTILLRVLKKKVPNSPENLIIARSPRALPIISLSVSYSLIISSGQRKKLSTSISISSIFSSCDRSKA 611
Range 4: 417 to 611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 48/65(74%) | 0/65(0%) | Plus/Plus |
Query 115 EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP 309 E+T YG QFL LA GNDQGIRD Q DDGQCSG* G+NEVLW*IRNLLLQH E +G+QL+EVP Subject 417 ENTGYGDRGTQFLSLARGNDQGIRDAQADDGQCSG*SGYNEVLW*IRNLLLQHSE*YGIQLHEVP 611
Range 5: 392 to 610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 49/73(67%) | 0/73(0%) | Minus/Minus |
Query 90 GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 308 GTS +* P S C*RRRFRIHQRTSL P+HPEHCPSS * SRIP*SFP+AK RN* + PY V S I ++P Subject 392 GTSCN*IPYYSEC*RRRFRIHQRTSL*PDHPEHCPSSA*ASRIP*SFPRAKERN*VPRSPYPVFSRLAIDRKP 610
Range 6: 404 to 610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 50/69(72%) | 0/69(0%) | Plus/Plus |
Query 102 DHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GT 308 D + R+Y IWR + SIS FG RK*S NTR SS**WAVLWVIW **GSLVNSEPSSST * W S *GT Subject 404 DRKTRKYWIWRSRYSISFFGPRK*SGNTRRSS**WAVLWVIWL**GSLVNSEPSSSTL*VIWYSVA*GT 610
Nucleotide Sequence (465 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
373.6 | 1280.5 | 19% | 8.763e-102 | 45% | DQ855088.1 | |
370.8 | 1363.5 | 29% | 5.892e-101 | 50% | JX559641.1 | |
368.6 | 1155.0 | 17% | 2.884e-100 | 39% | DQ787959.1 | |
338.8 | 804.0 | 36% | 2.665e-91 | 39% | DQ855081.2 | |
337.4 | 814.7 | 29% | 6.91e-91 | 38% | DQ855087.2 |
Alignments
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 8
Range 1: 562 to 1023 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
373.6 bits(809) | 0.0 | 145/154(94%) | 0/154(0%) | Plus/Plus |
Query 2 CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 CECVFIHDEVQYWSLDEMQRFLGSL+HANRVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGCSKT+DS+SRSWTITKLQT+GAHHIFSAVLGSFLTED+YKYDNFT+INPNDILRGRRGCKPLYLRARMI Subject 562 CECVFIHDEVQYWSLDEMQRFLGSLEHANRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMI 1023
Range 2: 561 to 1022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
281.5 bits(608) | 0.0 | 127/154(82%) | 0/154(0%) | Minus/Minus |
Query 1 IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHSQ 462 IILARKY GLHPL PLSISFGL+ VKLSYL SSVRKLPRTALK+ CAP VCSFVMVQLLD ES VLLHPS+ GFTGCV*APSALPSGY V+LPS KS V*ASGNRL PASTSAGYT+LYTT AC DP+NLCISSKLQY*TSS INTHSQ Subject 561 IILARKYKGLHPLRPLSISFGLITVKLSYLYESSVRKLPRTALKIWCAPTVCSFVMVQLLDFESIVLLHPSSQGFTGCV*APSALPSGYQVSLPSRKSNV*ASGNRLWLKPASTSAGYTMLYTTLLACSRDPKNLCISSKLQY*TSSWINTHSQ 1022
Range 3: 562 to 1023 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 90/154(58%) | 0/154(0%) | Minus/Minus |
Query 2 DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHAFT 463 DHP S VQRL PPS+PEYIV V+ GEVVVLV +L EATQN ED++RP LQLC+GPAS L*V+ L P P I+ L VG TI +P P IK + L + L E I+L RVHN +H V VLER *+SLH + APVLNLVV+KHAFT Subject 562 DHPGSQVQRLAPPSSPEYIVRVDHGEVVVLVRVLC*EATQNCTEDMVRPNGLQLCDGPAS*L*VYSLAAP**PRIYRLCVGPFCLTIWIPSKPPIPQIKRVSLWKQTLVETSIHLCRVHNAIHHPVSVLERP*KSLHLI*APVLNLVVDKHAFT 1023
Range 4: 561 to 1022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.4 bits(372) | 0.0 | 86/154(56%) | 0/154(0%) | Plus/Plus |
Query 1 L*MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG*KGV*AAVLTS*DD 462 L*MRVY RRGSILEL +AKI R+++AR V +CVP G C + K + GL++*F G + +V RW* R LH T +S+ RV D L+V+KLDH+KAAD GA +LQ SG*LP+RG +QVRQLH P+RYTQG KGV A VL S DD Subject 561 L*MRVYPRRGSILELR*DAKIFRVSRAR*QGGV*HCVPCRGGCWFQPKSVSRGLHV*FAGWEAYLVSRW*GRRGLHTTGKSLATRVQQDYRLKVKKLDHHKAADRWGAPYLQCSSG*LPNRGLVQVRQLHRDQPERYTQGTKGVQAFVLASQDD 1022
Range 5: 563 to 913 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 63/117(54%) | 0/117(0%) | Plus/Plus |
Query 3 VNACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAPFWVA 353 VNACL TTRFNTGA +CKD * SST T C LCT R M S K +R LI G G MV+ + PT N+*I G G R TQS EAGP QSCR GR SS FWVA Subject 563 VNACLSTTRFNTGA*MRCKDF*GLSSTLTGWCIALCTLQRWMLVSTKVCFQRLTRLICGMGGLLGIQMVRQKGPTHNR*ILGY*GAARL*TQSQEAGPSQSCRPLGRTISSVQFWVA 913
Range 6: 968 to 1024 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 14/19(74%) | 0/19(0%) | Plus/Plus |
Query 408 IYSGVEGGVSRCTYELG*S 464 IYSG EGG S CT E G*S Subject 968 IYSGDEGGASLCTCEPG*S 1024
Range 7: 878 to 1021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 32/48(67%) | 0/48(0%) | Minus/Minus |
Query 318 SS*LVSTAAYTPFYP*VYRLG**W*SCRTCRYPRSGSYPERR*RCDAP 461 SS L ST A TPF P*VYR G* *SCRTC P GSYPE *R AP Subject 878 SSWLASTKACTPFVP*VYRSG*SR*SCRTCTSPLLGSYPELH*RYGAP 1021
Range 8: 563 to 817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 38/85(45%) | 0/85(0%) | Minus/Minus |
Query 3 TRATMDSLVACRLPRLYHRGTMLTFLPLNQRYRPPGIGFDRTLHLPQPGTQYCTRLGLRA*AILGIFAFRPSSSIEPRRE*TRIH 257 T D V CR YH T P NQ +P F H P GTQ T RA L IFA SSSIEPRR *TRIH Subject 563 TLVAKDLPVVCRPLLPYHLDTK*ASHPANQTCKPLETDFG*NQHPPLQGTQCYTPPC*RARETLKIFASHLSSSIEPRRG*TRIH 817
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 8
Range 1: 551 to 1009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
370.8 bits(803) | 0.0 | 147/153(96%) | 0/153(0%) | Plus/Plus |
Query 5 ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 ECVFIHDEVQYWSLDEMQRFLGSLKH RVVYSIVYPAEVDAGF QSLFPEAYTFDLK+GRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQT+GAHHIFSAVLGSFLTED+YKYDNFTIINPNDILRGRRGCKPLYLRARMI Subject 551 ECVFIHDEVQYWSLDEMQRFLGSLKHVKRVVYSIVYPAEVDAGFSQSLFPEAYTFDLKDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTIINPNDILRGRRGCKPLYLRARMI 1009
Range 2: 550 to 1011 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
302.6 bits(654) | 0.0 | 132/154(86%) | 0/154(0%) | Minus/Minus |
Query 4 RIILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHS 465 RIILA +Y GLHPL PLS+SFGLMMVKLSYL* SSVRKLP+TALKM CAP VC+FV+VQLLDSESTVLLHPSN GFTGCV APSALPSGYHVNLPSF+SKV*ASGNRL* PASTSAGYT+LYTT F CLS+PRNLCISSKLQY TSS*+NTHS Subject 550 RIILALRYKGLHPLRPLSMSFGLMMVKLSYL*ESSVRKLPKTALKMWCAPTVCNFVIVQLLDSESTVLLHPSNQGFTGCVYAPSALPSGYHVNLPSFRSKV*ASGNRL*LKPASTSAGYTMLYTTLFTCLSEPRNLCISSKLQYWTSS*MNTHS 1011
Range 3: 557 to 1009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 92/151(61%) | 0/151(0%) | Minus/Minus |
Query 11 DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKH 463 DHP S +QRLTPPSTPEY+V V+DGEVV+LV IL QEATQNG EDV+RP+CLQLC+ PA L V+ TTP P +H LRV L FTI VP *P I+ +G E*ALTE ++L RV+N VH+ + ER+ +SLHF+QAPVL+L+VN+H Subject 557 DHPGSEIQRLTPPSTPEYVVRVDDGEVVILVRILCQEATQNGTEDVVRPHCLQLCDRPAPRLRVYSFTTP**PRVHRLRVCPLCFTIWVPR*PPVFQIESVGFWE*ALTETSVHLCRVYNAVHNPFHMFERAQKSLHFIQAPVLDLIVNEH 1009
Range 4: 559 to 1011 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 87/151(58%) | 0/151(0%) | Plus/Plus |
Query 13 VYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG*KGV*AAVLTS*DDP 465 V+SR G ILELG NAKI +AQ + VQ+C+P G +SKPIP L+ + R+VN+VPRW*SRG +HA E +V RV**+ L V +LD +K A++ GA HLQ R G*LPDRG+LQV QLHHH P+R+TQG KGV*A V S DDP Subject 559 VHSR*GPILELG*NAKISGLAQTCEKGCVQHCIPCRGGRWFQSKPIPRSLHFRSERREVNVVPRW*SRGGIHAAGEPLVTRV**NCRL*V*ELDDHKVANSGGAPHLQCRFG*LPDRGFLQV*QLHHHQPERHTQGSKGV*AFVSQSQDDP 1011
Range 5: 864 to 1010 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 35/49(71%) | 0/49(0%) | Minus/Minus |
Query 318 GSS*LVSTAAYTPFYP*VYRLG**W*SCRTCRYPRSGSYPERR*RCDAP 464 GSS L T AYTPF P*V R G**W*SC TC+ P SGSYP+R *RC AP Subject 864 GSSWL*DTKAYTPFDP*VCRSG**W*SCHTCKNPLSGSYPKRH*RCGAP 1010
Range 6: 558 to 809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 42/84(50%) | 0/84(0%) | Minus/Minus |
Query 12 YYTRATMDSLVACRLPRLYHRGTMLTFLPLNQRYRPPGIGFDRTLHLPQPGTQYCTRLGLRA*AILGIFAFRPSSSIEPRRE*T 263 YYT T S AC P LYH GT LT +++ R GIGFD P G Q CT+ *A IFAF PSSSI P RE*T Subject 558 YYTLVTKGSPAACMPPLLYHLGTTLTSRLSDRKCRLLGIGFD*NQRPPLQGIQCCTQPFSHV*ASPEIFAFHPSSSIGPHRE*T 809
Range 7: 552 to 899 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 62/116(53%) | 0/116(0%) | Plus/Plus |
Query 6 NACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAPFWVA 353 + C FT R NTGAW KCKD RS+ CT L T R SVKAYS++P I*+ G* GT MVK R TR++* G GVV+ T S AG QSC+Q GR TSS PFWVA Subject 552 SVCSFTMRSNTGAWMKCKDFWARSNM*KGLCTALYTLQRWTLVSVKAYSQKPTLSI*KTGG*RGTQMVKQRGHTRSR*TLGY*GVVKL*TLSLGAGRSQSCKQWGRTTSSVPFWVA 899
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 8
Range 1: 562 to 1023 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
368.6 bits(798) | 0.0 | 143/154(93%) | 0/154(0%) | Plus/Plus |
Query 2 CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 CECVFIHDEVQYWSLDEMQRFLGSL+HA RVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGC KT+DS+SRSWTITKLQT+GAHHIFSAVLGSFLTED+YKYDNFT+INPNDILRGRRGCKPLYLRARMI Subject 562 CECVFIHDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCRKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMI 1023
Range 2: 561 to 1022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.2 bits(590) | 0.0 | 124/154(81%) | 0/154(0%) | Minus/Minus |
Query 1 IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHSQ 462 IILARKY GLHPL PLS+SFGLM VKLSYL SSVRKLPRTALKM CAP VCSFV+VQLLD ES VL HPS+ GFTGCV APSALPSGY V+LPS +S V*ASGNRL PASTSAGYT+L TT FAC SDPRNLCISSKLQY TSS +NTHSQ Subject 561 IILARKYKGLHPLRPLSMSFGLMTVKLSYLYESSVRKLPRTALKMWCAPTVCSFVIVQLLDFESIVLRHPSSQGFTGCVYAPSALPSGYQVSLPSRRSNV*ASGNRLWLKPASTSAGYTML*TTLFACSSDPRNLCISSKLQYWTSSWMNTHSQ 1022
Range 3: 562 to 1023 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 76/154(49%) | 0/154(0%) | Minus/Minus |
Query 2 DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHAFT 463 DHP S*+QRL P S PEY++ V+DGEVV+LV +L EATQ+ EDV+RP LQLC+ PA L*V+ L P P ++ L V TI +P P IK + L E L E ++L VHN + +C+LER *+ LH + AP+L+LVV++HAFT Subject 562 DHPGS*IQRLAPSSPPEYVIRVDDGEVVILV*VLC*EATQDCTEDVVRPDGLQLCDSPAPRL*VYSLAAP**PRVYRLCVRPFCLTIWIPSKPPISQIKRVSLWEQTLVETSVHLCWVHNAIDHPLCMLERP*KPLHLI*APILDLVVDEHAFT 1023
Range 4: 561 to 1022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 74/154(48%) | 0/154(0%) | Plus/Plus |
Query 1 L*MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG*KGV*AAVLTS*DD 462 L*MRV+ RRG ILEL +AK+ R+A+A K + +CVP G + K +P GL++* + +V RW* R +H T + + RV D L+V +LD++KAA+ RGA HLQ G*LP+RG +QV QLH H P+ +TQG K V A V TS DD Subject 561 L*MRVHPRRGPILELR*DAKVSRVARACKEGGL*HCVPSRGGRWFQPKSVPRGLHV*SARWEAYLVSRW*GRRGVHTTGKPLATRVPQDYRLKV*ELDYHKAANRRGAPHLQCSPG*LPNRGLIQV*QLHRHQPE*HTQGAKRVQAFVFTSQDD 1022
Range 5: 563 to 913 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 53/117(45%) | 0/117(0%) | Plus/Plus |
Query 3 VNACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAPFWVA 353 VNAC TTR N GA +CK * RSS Q LCT+ R S K S+R LI G G MV+ + T N+* G G R TQS AG QSC+ GR TSS WVA Subject 563 VNACSSTTRSNIGA*MRCKGF*GRSSMQRGWSIALCTQQRWTLVSTKVCSQRLTRLICEMGGLLGIQMVRQKGRTHNR*TLGY*GAARL*TQSLGAGLSQSCKPSGRTTSSVQSWVA 913
Range 6: 971 to 1024 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 12/18(67%) | 0/18(0%) | Plus/Plus |
Query 411 YSGVEGGVSRCTYELG*S 464 YSG E G S C YE G*S Subject 971 YSGGEEGASLCIYEPG*S 1024
Range 7: 878 to 1021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 29/48(60%) | 0/48(0%) | Minus/Minus |
Query 318 SS*LVSTAAYTPFYP*VYRLG**W*SCRTCRYPRSGSYPERR*RCDAP 461 SS LV+T A T F P*V G** *SC TC P GSYP *RC AP Subject 878 SSWLVNTKACTLFAP*VCHSG**R*SCHTCMSPLLGSYPGLH*RCGAP 1021
Range 8: 563 to 793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 30/77(39%) | 0/77(0%) | Minus/Minus |
Query 3 VACRLPRLYHRGTMLTFLPLNQRYRPPGIGFDRTLHLPQPGTQYCTRLGLRA*AILGIFAFRPSSSIEPRRE*TRIH 233 V C YH T +Q +P G F P GTQ L A A L FA SS+I PRR *TRIH Subject 563 VVCTPLLPYHLDTK*ASHLADQTCKPLGTDFG*NQRPPLLGTQCYRPPSLHARATLETFASHLSSNIGPRRG*TRIH 793
Grapevine virus A isolate GTR1SD 1, complete genome
Sequence ID: DQ855081.2 Length: 7352 Number of Matches: 5
Range 1: 568 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
338.8 bits(733) | 0.0 | 128/153(84%) | 0/153(0%) | Plus/Plus |
Query 5 ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 +C+FIHDEVQYWSLDEMQRFLGSL NRVVYSI+YPAEV+AG+ QSLFPEAYTFDLKEGR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTITKLQT+GAHH+FSA+ GS+LTED+YKYDNFT+INPNDILRGRRG KPLYLRARMI Subject 568 QCIFIHDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIRGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMI 1026
Range 2: 570 to 1025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 98/152(64%) | 0/152(0%) | Minus/Minus |
Query 7 IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTH 462 IILAR+Y+GL PLLP +S GL+ VKLSYL* SSVR LP ALK AP VCSFVMV L ES VL H +HG G V APSALPSGY + LPS +S V*ASG RL* PASTSAG +LYTT F PR CISSKLQY TSS I H Subject 570 IILARRYNGLLPLLPRRMSLGLITVKLSYL*ESSVR*LPLMALKRW*APTVCSFVMVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSKLQYWTSSCIKMH 1025
Range 3: 571 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 62/152(41%) | 0/152(0%) | Minus/Minus |
Query 8 DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHA 463 DH VQ L P + + ++ V+ EV++ VGIL +G E V+ LQLC GP S L + L E+P I L + +LGFTI VP P+ L IK IG E AL PC+Y V+ +H S+ ++ +*++LH +QAP+L+LV+ K+A Subject 571 DHSGPEVQWLASPPSSQDVIGVDHSEVIIFVGILR*ITPPDGTEKVVSTNRLQLCYGPCSILGIDRLRASEKPRIDRLGICTLGFTIRVPNHPTLLKIKCIGFWEEALRVPCLYFCWVNYAIHYSIY*IQTT*KALHLIQAPILDLVMYKNA 1026
Range 4: 570 to 953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 50/128(39%) | 0/128(0%) | Plus/Plus |
Query 7 MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLH 390 M Y+ RG ILELG +A + R + K S V + +P R RV SKP+P LY+* G ++VP W*SRG ++ T +S+ +++ *D + +DH KAA+ + Q G L + G+LQ+ LH Subject 570 MHFYT*RGPILELG*DAALSR*FEFSK*SSV*HNLPSRSRGRVLSKPLPRSLYI*S*GG*GDLVPGW*SRGCIYPTYQSVASQML*DDRFQG*SMDHNKAANGWCSPPFQCHQGELSNGGFLQI**LH 953
Range 5: 653 to 904 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 37/84(44%) | 0/84(0%) | Plus/Plus |
Query 90 ESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAP 341 E C T+ +* QG++KA S++PI LI R+ G* GT MVKPR N I G S +R E GP QSC++ T S P Subject 653 E*CIA*FTQQK*RQGTLKASSQKPIHLILRRVG*FGTRMVKPRVHIPNLSIRGFSDALRRSIPRIEHGP*QSCKRLVLTTFSVP 904
Grapevine virus A isolate BMo32 1, complete genome
Sequence ID: DQ855087.2 Length: 7352 Number of Matches: 6
Range 1: 568 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.4 bits(730) | 0.0 | 127/153(83%) | 0/153(0%) | Plus/Plus |
Query 5 ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 +C+FIHDEVQYWSLDEMQRFLGSL NRVVYSI+YPAEV+AG+ QSLFPEAYTFDLK+GR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTITKLQT+GAHH+FSA+ GS+LTED+YKYDNFT+INPNDILRGRRG KPLYLRARMI Subject 568 QCIFIHDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKDGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIKGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMI 1026
Range 2: 570 to 1025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 97/152(64%) | 0/152(0%) | Minus/Minus |
Query 7 IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTH 462 IILAR+Y+GL PLLP IS GL+ VKLSYL* SSVR LP ALK * AP VCSFV+V L ES VL H +HG G V APSALPSGY + LPS +S V*ASG RL* PASTSAG +LYTT F PR CISS+LQY TSS + H Subject 570 IILARRYNGLLPLLPRRISLGLITVKLSYL*ESSVR*LPLMALKR**APTVCSFVIVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSRLQYWTSSCMKMH 1025
Range 3: 571 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 59/152(39%) | 0/152(0%) | Minus/Minus |
Query 8 DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHA 463 DH VQ L P + + I+ V+ EV++ + I +G + VM LQLC P S L V E+PW+ L V +L FTI VP P+ L IK IG E AL PC+Y ++ +H S+ + +*++LH VQAP+L+LVV ++A Subject 571 DHSGPQVQWLASPPSSQDIIGVDHSEVIIFIRIFC*ITPLDGTKKVMSTNRLQLCYSPCSILGVDCFRASEKPWVDRLGVCTLCFTIWVPNHPAILKIKCIGFWEEALRVPCLYFCWINYAIHYSIY*I*TT*KALHLVQAPILDLVVYENA 1026
Range 4: 570 to 974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 51/135(38%) | 0/135(0%) | Plus/Plus |
Query 7 MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRY 411 M ++RRG ILE GR+A + R + K S V + + R RV SKP+P LY+* G + ++VPRW*SRG +H T + M +++ *+ L+ +D+ KAA+ +S G L +R +L + LH P+ Y Subject 570 MHFHTRRGPILEPGRDAALSR*FKFSK*SSV*HNLSSRSRGRVLSKPLPRSLYI*S*GWQGDLVPRW*SRGCIHPTYQPMASQML*NNRLQG*SMDYNKAANGWCSSPF*CHQGELSNRRFL*I**LHCDQPQ*Y 974
Range 5: 653 to 904 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 35/84(42%) | 0/84(0%) | Plus/Plus |
Query 90 ESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAP 341 E C + +* QG++KA S++PI LI R G* GT MVK R T N HG S ++ T E G QSC++ IT P Subject 653 E*CIA*FIQQK*RQGTLKASSQKPIHLILRMAG*FGTQMVKQRVHTPNLSTHGFSDALKQSTPRIEHGL*QSCKRLVLITFLVP 904
Nucleotide Sequence (542 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
327.3 | 799.9 | 24% | 9.354e-88 | 31% | DQ855083.2 | |
332.4 | 1050.3 | 38% | 2.843e-89 | 40% | EU008561.1 | |
340.6 | 1513.1 | 42% | 9.352e-92 | 68% | DQ787959.1 | |
340.1 | 1556.8 | 26% | 1.285e-91 | 47% | DQ855088.1 | |
350.7 | 1449.0 | 44% | 8.636e-95 | 60% | JX559641.1 |
Alignments
Grapevine virus A isolate KWVMo4 1, complete genome
Sequence ID: DQ855083.2 Length: 7351 Number of Matches: 8
Range 1: 5642 to 6142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 131/167(78%) | 0/167(0%) | Plus/Plus |
Query 42 LTQAMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 +T AMS GD QG + S L EIK+FNVKRNTKDLE+LNK+LHRGD Y+TELIE+VFPRRT+KCV+H+EL+VKDGRVDCDLD+MD+GLD+VDE+EFPLYHVGCIVVALMPHGKNL GKV VEV DTRL+ +RISRS MD+SKP+SACADFPGYFISTTDLLNGYT Subject 5642 VTAAMSSGDSQGTQGSRSDLQEIKIFNVKRNTKDLESLNKSLHRGDVYDTELIERVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVALMPHGKNLQGKVAVEVVDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTTDLLNGYT 6142
Range 2: 5644 to 5841 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 41/66(62%) | 0/66(0%) | Minus/Minus |
Query 44 CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDIAWV 241 C THFLV GNT S++SVS*+SP CR LFR+S+S VFL TLK IS R+ D + P*+SP DIA V Subject 5644 CTTHFLVLRGNTLSMSSVS*TSPLCRLLFRLSRSFVFLLTLKILISCRSERDPWVP*ESPDDIAAV 5841
Range 3: 6040 to 6141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 27/34(79%) | 0/34(0%) | Minus/Minus |
Query 440 VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIR 541 VYPLS+SVVLMK PGKSA AL GLD SM+LL+IR Subject 6040 VYPLSKSVVLMKYPGKSAQALSGLDKSMRLLEIR 6141
Range 4: 5935 to 5991 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 17/19(89%) | 0/19(0%) | Minus/Minus |
Query 335 PFRFLPWGINATTMQPTWY 391 P RFLP GINATTMQPTWY Subject 5935 PCRFLPCGINATTMQPTWY 5991
Range 5: 5636 to 6139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 61/168(36%) | 0/168(0%) | Minus/Minus |
Query 36 VPVE*ISGAYEVTREICTCTYGLGHIHEAP*YPRIWSSESCVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHSLGQTP 539 V +E + EV+REI G +HE * + ++ V + +L +QILAM HQR A ++V EL+L++++ +H ++VTI T+F+ + +++AL P +H LY+ +I IP V +LV +L +L VPL +EDL + R L TL+IS HS P Subject 5636 VSIEQVCSTDEVSREIRASA*RFG*VHETS*DSGRSTLQTSVHHFNRHLPLQILAMWHQRDDYAANVVQRELILIYVV*TGVHQVQVTIHATVFDDEFSVHNALLGPSREHPLYEFCIIDIPPVQALVQTLEVLCVPLDIEDLNFL*I*ARSLGTLRIS*RHSRCHPP 6139
Range 6: 5644 to 5835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 33/64(52%) | 0/64(0%) | Plus/Plus |
Query 44 DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVR 235 D YV RRFSG+ GI RS+ + LQ +EEH+G R+S+Q G L* R REGV D+EVR Subject 5644 DSGYVVRRFSGYPGIALRSTGN*DLQCQEEHKGPRESEQEPAQGGCL*YRTHREGVPAKDQEVR 5835
Range 7: 6016 to 6141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 13/42(31%) | 0/42(0%) | Plus/Plus |
Query 416 HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH 541 H ++ ++K+ HG +Q K + FPW+LH+++ Q +H Subject 6016 HSSEEWSGPNLKKSHGLIQTAKRLRGFPWILHQYYRLAQWIH 6141
Range 8: 5652 to 5987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 44/112(39%) | 0/112(0%) | Minus/Minus |
Query 52 SDSCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT* 387 +DSCH AST C++ G GT P P HN L* RTS S TPSL H HP C +S P CSS *R + IP PENL T* Subject 5652 ADSCHVASTRRLCSQRGTKGTHPHLRRLDRSPSGPSHNPRDRL*R*VLCAQRTSWSFAGTPSL*VLYHRHPPCAGSCSDSRGPLCSS*H*RS*FPVDLSAIPGYPENLLTT* 5987
Grapevine virus A clone MT25/7 movement protein (MP) and coat protein (CP) genes, complete cds
Sequence ID: EU008561.1 Length: 1523 Number of Matches: 13
Range 1: 73 to 570 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.4 bits(719) | 0.0 | 136/166(82%) | 0/166(0%) | Plus/Plus |
Query 45 TQAMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 T AMS GD +G KES L EIKVF+VKRNT+DLETLNK+LHRGD Y+TELIEKVFPRRT+KCVIHKEL+VKDGRVDCDLD+MD+GLD+VDEEEFPLYHVGCIVVALMPHGKNL GKV VEV DTRL+ +RISRS MDMSKP+SACADFPGYFIST+DLLNGYT Subject 73 TSAMSQGDSRGTKESPSELQEIKVFHVKRNTRDLETLNKSLHRGDVYDTELIEKVFPRRTKKCVIHKELIVKDGRVDCDLDLMDSGLDDVDEEEFPLYHVGCIVVALMPHGKNLQGKVAVEVVDTRLKDGAARISRSLMDMSKPLSACADFPGYFISTSDLLNGYT 570
Range 2: 79 to 567 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 75/163(46%) | 0/163(0%) | Minus/Minus |
Query 51 VPVE*ISGAYEVTREICTCTYGLGHIHEAP*YPRIWSSESCVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS 539 VP++ I+G EV R+ICT H+HEAP*YPR + CV DL+ +L++++L M HQRHHD ++V WELL V +I+P +H+I++TI I + QLLMY A P + LLYQL ++ I +V + + L + VPLHV+DL ++ RFL T +IS HS Subject 79 VPIQQIAGTDEVPRKICTGA*RF*HVHEAP*YPRCPILQPCVHDLYCHLSLKVLTMWHQRHHDTANVVKWELLFVDVIQPTVHEIQITIHAAILHDQLLMYDAFLGPSREDLLYQLCVVHITSVQAFIEGLKVSCVPLHVKDLNFLQL*GRFLCTPRISLRHS 567
Range 3: 57 to 269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 46/71(65%) | 0/71(0%) | Minus/Minus |
Query 29 CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDIAWVRLPLD 241 C+THFLV LG TFSI+SVS +SP CR L RVS+SLVFLFT KT IS + DSF P +SP DIA V L L+ Subject 57 CMTHFLVLLGKTFSISSVSYTSPLCRLLLRVSRSLVFLFT*KTLISCSSEGDSFVPRESPCDIADVPLCLN 269
Range 4: 471 to 569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 24/33(73%) | 0/33(0%) | Minus/Minus |
Query 443 VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDI 541 VYP S+S+VLMK PGKSA AL G D+SM+LLDI Subject 471 VYPFSKSLVLMKYPGKSAQALSGFDMSMRLLDI 569
Range 5: 366 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 14/18(78%) | 0/18(0%) | Minus/Minus |
Query 338 PFRFLPWGINATTMQPTW 391 P RFLP GI+ATT+QPTW Subject 366 P*RFLPCGISATTIQPTW 419
Range 6: 206 to 568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 58/121(48%) | 0/121(0%) | Plus/Plus |
Query 178 MIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT 540 M S**RR + G +A YIRS +M IV ISW G M T+RSSH+T SWWR*C M R R RS TQ RGYQGASW C + * VQI TS P I GT Subject 206 MCTTQS**RRSSREGPRNASYIRS*S*RMAAWIVIWISWTVGWMTSTKRSSHFTTLAVSWWR*CHMVRTFRERWQ*RSWTQG*RMGQRGYQGASWTCQNR*APVQIFRGTSSVPAIC*MGT 568
Range 7: 66 to 167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 19/34(56%) | 0/34(0%) | Plus/Plus |
Query 38 ESDPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQ 139 + D SYV RRF+G+KGI R++ + GL REEEH+ Subject 66 KGDISYVARRFAGYKGIALRAAGN*GLSREEEHK 167
Range 8: 206 to 409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 32/68(47%) | 0/68(0%) | Minus/Minus |
Query 178 SCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNH 381 S H AS PPR ++ G VGTP R H A P* HN H APYV R S S PSLS H Subject 206 SYHVASAPPRYSQRGKVGTPLRRRHPAHCP*DPNHNPRGHPSRSAPYV*RISWSFSGRPSLSALCRTH 409
Range 9: 467 to 568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 16/34(47%) | 0/34(0%) | Minus/Minus |
Query 439 CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISA 540 CT ++W *S NLH L T P* SLIS+ Subject 467 CTHSANRWY**STPENLHRRLAVLTCP*GSLISS 568
Range 10: 56 to 163 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 19/36(53%) | 0/36(0%) | Minus/Minus |
Query 28 CSSSR*RPLSHEERVTIPLNPENLRRT*LGSDSH*T 135 CSSSR RP IPL P NL T*L S *T Subject 56 CSSSRERP*FPAALRAIPLYPANLLAT*LMSPFA*T 163
Range 11: 444 to 569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 17/42(40%) | 0/42(0%) | Plus/Plus |
Query 416 HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH 541 HK + DIKE HG+V+ K +CRF +LH++ + VH Subject 444 HKVEGWGSEDIKEPHGHVKTAKRLCRFSGVLHQYQRFAEWVH 569
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 10
Range 1: 5661 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.6 bits(737) | 0.0 | 141/164(86%) | 0/164(0%) | Plus/Plus |
Query 51 AMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 +MS D Q K SS LHEIKVFNVKRNTKDLETLNKALHRGD YETELIEKVFPRRT+KCVIH+ELVVKDGRVDCDLDIMD GL +V+EEE+PLYHVGCIVVALMPHGKNL GKVVVE+KDTRL+ P+SRISRSFMDMSKPISACADFPGYFIST DLLNGYT Subject 5661 SMSNRDSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIEKVFPRRTKKCVIHRELVVKDGRVDCDLDIMDNGLGDVNEEEYPLYHVGCIVVALMPHGKNLTGKVVVELKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGYT 6152
Range 2: 5653 to 6000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 84/116(72%) | 0/116(0%) | Minus/Minus |
Query 43 RSDSCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGS 390 +SDSCHGAS PPR N HGIV TPP Q YP*YQGHNRPYH PPA V TSLS L TP LSTRSH HP G PC ES NPWCS+S *RPLSHEERV IPLNPENL T LGS Subject 5653 QSDSCHGASVPPRYNPHGIVDTPPHSHPQVHYP*YQGHNRPYHPSPPALCVLHTSLSFLGTPFLSTRSHKHPRGAGPCSESPNPWCSASH*RPLSHEERVMIPLNPENLCWTYLGS 6000
Range 3: 6051 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 27/34(79%) | 0/34(0%) | Minus/Minus |
Query 441 CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YP 542 CVP+E*+ GAYEVTREI T TY GHIHEAP*YP Subject 6051 CVPIE*VCGAYEVTREISTGTYRFGHIHEAP*YP 6152
Range 4: 5661 to 6029 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 84/123(68%) | 0/123(0%) | Minus/Minus |
Query 51 CVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS 419 CVL+LH++LA QILAMGHQ HHD T MV*W LLL+H+ K IHDIKVTIDPTI +HQL +Y+ L CP W+HL YQLGLI IP V LV SL ILGVPLH++DLYLMK+ * L* L+IS GH+ Subject 5661 CVLELHNHLASQILAMGHQCHHDTTHMV*WILLLIHIPKSIIHDIKVTIDPTILHHQLSVYYTLLCPSWEHLFYQLGLINIPAVQGLVQSLQILGVPLHIKDLYLMKSV**SL*ILRISVGHT 6029
Range 5: 6046 to 6150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 25/35(71%) | 0/35(0%) | Minus/Minus |
Query 436 CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISAN 540 CT *V CL*SNQGN H HL WTYP*SSLIS + Subject 6046 CTH*VSLRCL*SNQGNQHRHL*VWTYP*SSLISVS 6150
Range 6: 5654 to 5902 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 61/83(73%) | 0/83(0%) | Plus/Plus |
Query 44 DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVRDT*GAGG*RW*GRL*P*YH 292 DP YV++RFSGFKGI+TRSS*DKGL E EHQGF DS+QG P G L*DRVDR+GV K DKEV +T AGG W*GRL*P*YH Subject 5654 DPKYVQQRFSGFKGIITRSS*DKGL*CEAEHQGFGDSEQGPAPRGCL*DRVDRKGVPKKDKEVCNTQRAGGEGW*GRL*P*YH 5902
Range 7: 5936 to 6151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 49/72(68%) | 0/72(0%) | Plus/Plus |
Query 326 VPTIPCRLHRGGVDAPWXXXXXXXXXXXXXHKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH 541 V TIPC L+RGG DAPWQES+ QG G QGHK +R DIKELHGYVQ +KC+C FPWLLHKH TQ VH Subject 5936 VSTIPCGLYRGGTDAPWQESDWQGGCGAQGHKAKRA*LTDIKELHGYVQTYKCLC*FPWLLHKHRRLTQWVH 6151
Range 8: 5945 to 6151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 58/69(84%) | 0/69(0%) | Minus/Minus |
Query 335 VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTWY 541 VYPLS+S VLMK*PGKSA AL+GLDISMKLLDIRE G SLVSL+STTTLP RFLPWGI+ATT+QPTWY Subject 5945 VYPLSKSAVLMK*PGKSAQALIGLDISMKLLDIRELGSFSLVSLSSTTTLPVRFLPWGISATTIQPTWY 6151
Range 9: 5663 to 5851 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 51/63(81%) | 0/63(0%) | Minus/Minus |
Query 53 CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDI 241 CITHF V LGNTFSINSVS*+SPRCRALFRVSKSLVF FTLKTFIS*R DD F+ *+S DI Subject 5663 CITHFFVLLGNTFSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*ESLLDI 5851
Range 10: 5761 to 6150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 89/130(68%) | 0/130(0%) | Plus/Plus |
Query 151 L*TRLYTVGMIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT 540 L*TR T GM MRPS**+RC Q GQ S *Y SWW +MVGSIVTLISWI L RRS HYTM V SWW *CPMARI* AR W SRTQ + GYQGASWICP+ *V V ISLVTS*AP YS GT Subject 5761 L*TRPCTAGMFMRPS**KRCSQEGQRSV*YTESWW*RMVGSIVTLISWIMDLGM*MRRSIHYTMWVVSWWH*CPMARI*LARWLWSSRTQG*KSLAHGYQGASWICPNL*VPVLISLVTS*APQTYSMGT 6150
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 11
Range 1: 5661 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 141/164(86%) | 0/164(0%) | Plus/Plus |
Query 51 AMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 +MS Q K SS LHEIKVFNVKRNTKDLETLNKALHRGD YETELIE+VFPRRTRKCVIH+ELVVKDGRVDCDLDIMD GL+ VDE+E+PLYHVGCIVVALMPHGKNL+GKVVVEVKDTRL+ P+SRISRSFMDMSKPISACADFPGYFIST DLLNGYT Subject 5661 SMSNRGSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDIMDDGLENVDEDEYPLYHVGCIVVALMPHGKNLSGKVVVEVKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGYT 6152
Range 2: 5661 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
267.3 bits(577) | 0.0 | 110/164(67%) | 0/164(0%) | Minus/Minus |
Query 51 CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YPRIWSSESCVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS 542 CVP+E*+ GAYEVTREI TCTY GHIHEAP*YP +SCVLDLH++ A +L MGHQRHHD DMV*W L+L+H++K IHDIKVTIDP I H L +YH LPCPPW+H YQLGL+ IP V LV SL ILGVPL+VEDLYLMK+ *R L* L+ S GH+ Subject 5661 CVPIE*VRGAYEVTREISTCTYRFGHIHEAP*YP*AGLFQSCVLDLHYHFAT*VLTMGHQRHHDTADMV*WILILIHILKSIIHDIKVTIDPAILYH*LSVYHTLPCPPWEHPFYQLGLVNIPAVQGLVQSLQILGVPLYVEDLYLMKSV*RSL*ILRTSVGHT 6152
Range 3: 5653 to 5991 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 79/113(70%) | 0/113(0%) | Minus/Minus |
Query 43 SCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGS 381 S HGAS PPR +RHGIV T P P Q +P*YQGHNRP H P A VS TSLS+L TP LSTRS HP G PC ES NPWCS+ R*RPLSHEERVTIPLNPENL T LGS Subject 5653 SYHGASAPPRYSRHGIVDTHPHPHSQVHHP*YQGHNRPCHPLPLALCVSHTSLSSLGTPFLSTRSRKHPRGAGPCSESPNPWCSALR*RPLSHEERVTIPLNPENLCWTYLGS 5991
Range 4: 6046 to 6150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 26/35(74%) | 0/35(0%) | Minus/Minus |
Query 436 CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISAN 540 CT *V CL*SNQGN HMHL WTYP*SSLIS + Subject 6046 CTH*VSPRCL*SNQGNQHMHL*VWTYP*SSLISVS 6150
Range 5: 5654 to 5902 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 61/83(73%) | 0/83(0%) | Plus/Plus |
Query 44 DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVRDT*GAGG*RW*GRL*P*YH 292 DP YV++RFSGFKGIVTRSS*DKGLQR+ EHQGF DS+QG P G L DRVDR+GV K DKEV DT A G W GRL*P*YH Subject 5654 DPKYVQQRFSGFKGIVTRSS*DKGLQRKAEHQGFGDSEQGPAPRGCLRDRVDRKGVPKEDKEVCDTQRASGKGWQGRL*P*YH 5902
Range 6: 6026 to 6151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 30/42(71%) | 0/42(0%) | Plus/Plus |
Query 416 HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH 541 HKT+R + DIKELHGYVQ +KCMC FPWLLHKH TQ VH Subject 6026 HKTERAQLTDIKELHGYVQTYKCMC*FPWLLHKHRGLTQWVH 6151
Range 7: 5936 to 5986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 14/17(82%) | 0/17(0%) | Plus/Plus |
Query 326 VPTIPCRLHRGGVDAPW 376 V TIPCRL+RGG DAPW Subject 5936 VSTIPCRLYRGGADAPW 5986
Range 8: 5761 to 6150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 87/130(67%) | 0/130(0%) | Plus/Plus |
Query 151 L*TRLYTVGMIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT 540 L*TR T GM RPS**+ C QGGQGS *Y S W +M GSIVTLISW+ L W R S HYTMS SWWR*CPM R * A+ WRSRTQD + GYQGASWICP+ *VHV ISLVTS*AP YS GT Subject 5761 L*TRPCTAGMFTRPS**KGCSQGGQGSV*YTES*W*RMAGSIVTLISWMMDLRMWMRMSIHYTMSAVSWWR*CPMVRT*VAKW*WRSRTQD*KSPAHGYQGASWICPNL*VHVLISLVTS*APRTYSMGT 6150
Range 9: 5945 to 6151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 60/69(87%) | 0/69(0%) | Minus/Minus |
Query 335 VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTWY 541 VYPLS+S VLMK*PGKSAHAL+GLDISMKLLDIRE G SLVSLTSTTTLP RFLPWGI+ATT+QPTWY Subject 5945 VYPLSKSAVLMK*PGKSAHALIGLDISMKLLDIRELGSFSLVSLTSTTTLPLRFLPWGISATTIQPTWY 6151
Range 10: 5663 to 5851 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 50/63(79%) | 0/63(0%) | Minus/Minus |
Query 53 CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDI 241 CITHFLV LGNT SINSVS*+SPRCRALFRVSKSLVF FTLKTFIS*R DD F+ *+ DI Subject 5663 CITHFLVLLGNTLSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*EPLLDI 5851
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 10
Range 1: 5650 to 6138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
350.7 bits(759) | 0.0 | 144/163(88%) | 0/163(0%) | Plus/Plus |
Query 54 MSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 MS QG K SS LHEIKVFNVKRNTKDLETLNKALHRGD YETELIE+VFPRRTRKCVIH+ELVVKDGRVDCDLDI+D+GLD+VDEEE+PLYHVGCIVVALMPHGKNL GKVVVEVKDTRL+GP+SRISRSFMD+SKPISACADFPGYFISTTDLLNGYT Subject 5650 MSSEGSQGSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDILDSGLDDVDEEEYPLYHVGCIVVALMPHGKNLGGKVVVEVKDTRLKGPSSRISRSFMDLSKPISACADFPGYFISTTDLLNGYT 6138
Range 2: 5639 to 5986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 81/116(70%) | 0/116(0%) | Minus/Minus |
Query 43 RSDSCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGS 390 R D CHGASTPPRCNRHGIV TP RP HQAL P YQ NRP H P P VSRTSL + ETPS S S HP G PCLES +PWCS *RPLSHE RV IPLNPENLR T* GS Subject 5639 RPDFCHGASTPPRCNRHGIVDTPLRPHHQALNPRYQDRNRPDHPLQPIPCVSRTSLFSSETPSQSILSRKHPRGAGPCLESPDPWCSV*H*RPLSHEARVMIPLNPENLRWT**GS 5986
Range 3: 6037 to 6138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 23/34(68%) | 0/34(0%) | Minus/Minus |
Query 441 CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YP 542 CVPVE + GAYE+TREI Y G IHEAP*YP Subject 6037 CVPVEQVRGAYEITREIGASAYRFG*IHEAP*YP 6138
Range 4: 5647 to 6012 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 82/122(67%) | 0/122(0%) | Minus/Minus |
Query 51 VLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS 416 +LDLH++LA QI AMGHQRHHDATDMV*W LL VH+IKP I DIK+ IDPTI +Q +YHALPC P KH L Q L+ IP V LV*SL ILGVP +EDLYLMK * L*TL+ AGHS Subject 5647 ILDLHYHLAAQIFAMGHQRHHDATDMV*WILLFVHIIKP*IQDIKIAIDPTILYNQFPVYHALPCSPRKHPLNQFCLVNIPAVQGLV*SLQILGVPFDIEDLYLMKRV**SL*TLRTFAGHS 6012
Range 5: 6032 to 6136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 21/35(60%) | 0/35(0%) | Minus/Minus |
Query 436 CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISAN 540 CTR* WCL*+NQGN L W P*SSLIS + Subject 6032 CTR*AGPWCL*NNQGNRRKRL*VWINP*SSLISVS 6136
Range 6: 5931 to 6137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 63/69(91%) | 0/69(0%) | Minus/Minus |
Query 335 VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTWY 541 VYPLSRSVVLMK*PGKSA AL+GLD SMKLLDIRE GP SLVSLTSTTTLP RFLPWGINATTMQPTWY Subject 5931 VYPLSRSVVLMK*PGKSAQALIGLDKSMKLLDIRELGPFSLVSLTSTTTLPPRFLPWGINATTMQPTWY 6137
Range 7: 5649 to 5837 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 48/63(76%) | 0/63(0%) | Minus/Minus |
Query 53 CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDI 241 CITHFLV LGNT SINSVS*+SPRCRALFRVS+SLVF TLKTFIS* DD F+P*+ DI Subject 5649 CITHFLVLLGNTLSINSVS*TSPRCRALFRVSRSLVFRLTLKTFIS*SACDDPFEP*EPSLDI 5837
Range 8: 5640 to 5885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 55/82(67%) | 0/82(0%) | Plus/Plus |
Query 44 DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVRDT*GAGG*RW*GRL*P*Y 289 DP YV+RRFSGFKGI+TR+S*DKGLQ + EHQG DSKQG P G L DR+D EGVS+ +KEVRDT G G W GRL *Y Subject 5640 DPYYVQRRFSGFKGIITRAS*DKGLQCQTEHQGSGDSKQGPAPRGCLRDRID*EGVSEENKEVRDTQGIGCKGWSGRLRS*Y 5885
Range 9: 5922 to 6137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 47/72(65%) | 0/72(0%) | Plus/Plus |
Query 326 VPTIPCRLHRGGVDAPWXXXXXXXXXXXXXHKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH 541 V TIPCRLHRGGVDAPWQ+S RQG GGQG++ + + DIKELHG++Q +K + RFPWL HKHH QRVH Subject 5922 VSTIPCRLHRGGVDAPWQKSGRQGGSGGQGYEAKGAQLTDIKELHGFIQTYKRLRRFPWLFHKHHGPAQRVH 6137
Range 10: 5747 to 6136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 83/130(64%) | 0/130(0%) | Plus/Plus |
Query 151 L*TRLYTVGMIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT 540 L*TR T GM R +* R CF+G QGSA*Y +W +MVGSI LISWIQGLM WT+RS HYTMSVASWWR*CPMA+I AR WRSR + GYQGASWI P+ * ISLV S*AP STGT Subject 5747 L*TRPCTAGMFTRQN*LRGCFRGEQGSA*YTGNWL*RMVGSIAILISWIQGLMMWTKRSIHYTMSVASWWR*CPMAKIWAARW*WRSRIRG*RGPAHGYQGASWIYPNL*ALAPISLVIS*APRTCSTGT 6136