Nucleotide Sequence (372 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
200.4 | 873.9 | 33% | 8.432e-50 | 62% | AF525933.1 | |
50.1 | 50.1 | 26% | 0.0001495 | 32% | AY535016.1 | |
50.1 | 50.1 | 26% | 0.0001495 | 32% | NC_006051.1 |
Alignments
Mirafiori lettuce big vein virus isolate LS301 O putative RNA polymerase and 25K protein genes, complete cds
Sequence ID: AF525933.1 Length: 7794 Number of Matches: 10
Range 1: 7108 to 7443 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 97/112(87%) | 0/112(0%) | Plus/Minus |
Query 4 LLFAEKLDPPFNMKAVIIIETDQELVDVADFEGIEIILGNNIQSCLDSFYMHVYKEDXXXXXXXXXXXXXXDNFKIPKYFAKLDINQARLKKTIEKKYMSVIKTGKL*WFNK 339 LLFAEKL PPFNMKA+IIIETDQELVDVADFEGIEI+LGNNIQSCLDSFYM YKEDLIL NT ELLLL DNFKIPKYFAKLD+NQ RLKK IEKKYMS+IK GKL* FNK Subject 7108 LLFAEKLIPPFNMKAIIIIETDQELVDVADFEGIEILLGNNIQSCLDSFYMRFYKEDLILYNTANELLLLIDNFKIPKYFAKLDMNQVRLKKIIEKKYMSLIKAGKL*CFNK 7443
Range 2: 7246 to 7443 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 41/66(62%) | 0/66(0%) | Minus/Plus |
Query 4 FSSSVEKYQVFFVDVHIK*IQARLNIVTKYDFYSLEVGNIN*FLICFDYYYRLHIKRRVQLLCKKQ 201 F SSV KYQVFFV+ HIK*IQARLNIV K D YS +V N++*FL+ F+YYY H+K Q C++Q Subject 7246 FVSSVVKYQVFFVEAHIK*IQARLNIVPK*DLYSFKVSNVD*FLVRFNYYYCFHVKGWNQFFCEEQ 7443
Range 3: 7106 to 7225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 30/40(75%) | 0/40(0%) | Minus/Plus |
Query 222 FLLNHQSFPVFITDMYFFSIVFFSLAWLISNLAKYFGILK 341 FLL H SFP FI DMYFFSI+FF+ ISNLAKYFGILK Subject 7106 FLLKH*SFPAFIKDMYFFSIIFFNRT*FISNLAKYFGILK 7225
Range 4: 7107 to 7442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 72/112(64%) | 0/112(0%) | Plus/Minus |
Query 5 CFLQRSWTRLLI*RR***SKQIKN*LMLPTSRE*KSYLVTIFNLAWIHFICTSTKKT*YFSTLLENYFY*LTISRYQSILLN*ISTKQD*RKRLRKSTCL**KQENFDGLIK 340 C Q++ L *++*** K+ +N* L T +E*+SYL TIF+LAWIHFIC STKKT*YF+TLL N + *L IS+YQ+ILLN*I K D*RK LR+STCL**+QENF+ LIK Subject 7107 CSSQKN*FHPLT*KQ***LKRTRN*STLLTLKE*RSYLGTIFSLAWIHFICASTKKT*YFTTLLTNCYC*LIISKYQNILLN*I*IKYD*RK*LRRSTCL**RQENFNALIK 7442
Range 5: 7106 to 7345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 53/80(66%) | 0/80(0%) | Plus/Minus |
Query 102 NRNHTW*QYSILLGFILYARLQRRLDTSQHYWRTTSTN*QFQDTKVFC*IRYQPSKTKEND*EKVHVCNKNRKTLMV**K 341 NR+ TW QYS+LLGFILYA LQRR DT QH RT + +* FQ+TK+FC*IRY+ S +EN+*E+VHV +K RKTLM+**K Subject 7106 NRDLTWEQYSVLLGFILYALLQRRPDTLQHC*RTATVD**FQNTKIFC*IRYESSTIEENN*EEVHVFDKGRKTLML**K 7345
Range 6: 7108 to 7233 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 28/42(67%) | 0/42(0%) | Minus/Plus |
Query 214 FIKPSKFSCFYYRHVLFLNRFL*SCLVDI*FSKILWYLEIVS 339 FIK KFSC Y RHVL LN FL S L+ I*FSKI WY EI++ Subject 7108 FIKALKFSCLYQRHVLLLNYFLQSYLIHI*FSKIFWYFEIIN 7233
Range 7: 7281 to 7367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 19/29(66%) | 0/29(0%) | Minus/Plus |
Query 80 CRRAYKMNPSKIEYCYQV*FLFPRSRQHQ 166 CR AYKMNPSK EYC QV LF +S+Q + Subject 7281 CRSAYKMNPSKTEYCSQVRSLFLQSQQRR 7367
Range 8: 7400 to 7444 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 13/15(87%) | 0/15(0%) | Minus/Plus |
Query 3 AFILKGGSNFSAKSN 47 AF+LKGG NFSAKSN Subject 7400 AFMLKGGINFSAKSN 7444
Lettuce ring necrosis virus segment RNA 1, complete sequence
Sequence ID: AY535016.1 Length: 7651 Number of Matches: 1
Range 1: 7126 to 7410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 30/95(32%) | 0/95(0%) | Plus/Minus |
Query 4 LLFAEKLDPPFNMKAVIIIETDQELVDVADFEGIEIILGNNIQSCLDSFYMHVYKEDXXXXXXXXXXXXXXDNFKIPKYFAKLDINQARLKKTIE 288 LL ++K+ F+ KAVIII+T VDV ++ I I L I S + +YK D ++ ++ L + + IP Y L + R K+ +E Subject 7126 LLTSDKVPRIFDKKAVIIIKTLNSFVDVVLYDDIFISLTQKICDIFTSLFFQLYKVDAMISFGDKKIYRLENGYTIPHYSMILSKEEERSKRNLE 7410
Lettuce ring necrosis virus RNA 1, complete genome
Sequence ID: NC_006051.1 Length: 7651 Number of Matches: 1
Range 1: 7126 to 7410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 30/95(32%) | 0/95(0%) | Plus/Minus |
Query 4 LLFAEKLDPPFNMKAVIIIETDQELVDVADFEGIEIILGNNIQSCLDSFYMHVYKEDXXXXXXXXXXXXXXDNFKIPKYFAKLDINQARLKKTIE 288 LL ++K+ F+ KAVIII+T VDV ++ I I L I S + +YK D ++ ++ L + + IP Y L + R K+ +E Subject 7126 LLTSDKVPRIFDKKAVIIIKTLNSFVDVVLYDDIFISLTQKICDIFTSLFFQLYKVDAMISFGDKKIYRLENGYTIPHYSMILSKEEERSKRNLE 7410