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Queries

Nucleotide Sequence (410 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 5 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
41
82
123
164
205
246
287
328
369
410

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
169.2 349.1 24% 1.703e-41 41% NC_012484
165.6 311.1 28% 2.161e-40 38% NC_015522
165.1 318.4 35% 2.969e-40 34% NC_002786
150.4 390.7 27% 7.701e-36 40% NC_031692
148.6 295.1 26% 2.743e-35 34% NC_006950

Alignments

Grapevine Syrah Virus-1, complete genome

Sequence ID: Length: 6506 Number of Matches: 3

Range 1: 5287 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 69/133(52%) 0/133(0%) Plus/Plus
Query       10  CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE  408
                C   V   G +R P ALFAK+ + V+D +I +K+ SYATEF+IGHSLGDA W+LLP+E V YQSAVFDF CR+A  ++K++FKLG VE S+   +    +W SY+ Y  LNS QR+ L  ++ + HFPGD+ E
Subject   5287  CGYYVGAAGAVRMPRALFAKIFIAVEDASIADKMASYATEFAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPE  5685

Range 2: 5311 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 51/125(41%) 0/125(0%) Minus/Minus
Query       34  FFGVTGKVLANSLSTESSALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA  408
                F G+  +V     S E  AL  IE  V GVR PG         R  D A+ E   +   S+A +EVED RLI +  D E+ PE V E V + ELSGI   L+ +G V+N+  +LGE+C G A+ A
Subject   5311  FGGIAREVELGRASEEHLALS*IEEAVEGVRSPGGKFLDCFNNRALDRAELEEQFEFPRSIAAKEVEDGRLIDNLLDREEGPERVAETVPNGELSGIRSHLVSDGGVLNSDEDLGEQCPGHANCA  5685

Range 3: 5298 to 5555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 48/86(56%) 0/86(0%) Minus/Minus
Query       21  EISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT  278
                E ST PSL  +L S  A RQ+KSKTAD** T+S G R Q ASPR  P+ NSVA*E   S+M  SST    LA SA+G R  P   T
Subject   5298  ERSTGPSLKSSLSSRGALRQRKSKTAD**TTSSTGRRDQSASPRLCPMANSVA*EAILSAMEASSTAMKILANSALGMRTAPAAPT  5555

Switchgrass mosaic virus, complete genome

Sequence ID: Length: 6423 Number of Matches: 3

Range 1: 5104 to 5457 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 67/118(57%) 0/118(0%) Plus/Plus
Query       10  CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL  363
                C   V   G +RSP ALFAKLM+ VDD +ID+KL++Y TEF++GHSLGDAFW +LP+E VPYQSA FDFFCR A    KVM +LG    SL S     L W S+S Y+++NS  RR L
Subject   5104  CGYYVGFTGAVRSPPALFAKLMIAVDDESIDDKLIAYLTEFTVGHSLGDAFWTILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSSHRRQL  5457

Range 2: 5115 to 5381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 48/89(54%) 0/89(0%) Minus/Minus
Query       21  EKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT  287
                ++R+    PSL+MTL  + A RQKKSK A  *GT S G   QKASPRE P  NSV *  S SS+  SST  MSLAK A G+R  P   T
Subject   5115  DRRDSGASPSLSMTLACAGARRQKKSKHALW*GTVSTGRMVQKASPREWPTVNSVR*AMSLSSIDSSSTAIMSLAKRAGGDRTAPVKPT  5381

Range 3: 5152 to 5346 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 25/65(38%) 0/65(0%) Minus/Minus
Query       58  HDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEK  252
                HD  +    + EEVE   L+ D  DGE  PEGV + +   EL  +G++L+++  VV+  HELG++
Subject   5152  HDFGLRWGASAEEVETRALVRDGLDGEDGPEGVAKRMAHRELGEVGDELVVDRLVVHGDHELGKE  5346

Maize rayado fino virus isolate Costa Rican, complete genome

Sequence ID: Length: 6305 Number of Matches: 3

Range 1: 4999 to 5352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 67/118(57%) 0/118(0%) Plus/Plus
Query       10  CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL  363
                C   V   G +RSP ALFAKLM+ VDDG+I +KL++Y TEF++GHS GDAFW +LP+EAVPYQSA FDFFCR A    KVM +LG    SL S     L W S+S Y+++NS  RR L
Subject   4999  CGYYVGFTGAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQL  5352

Range 2: 5010 to 5276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 48/89(54%) 0/89(0%) Minus/Minus
Query       21  EKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT  287
                E R+    PS N+TL  + A RQKKSK A  *GTAS G   QKASP E P  NSV *  S S M PSST  MS AK A G+R  P   T
Subject   5010  ESRDSGASPSRNITLACAGARRQKKSKQALW*GTASTGRMVQKASPEEWPTVNSVR*AMSLSEMDPSSTAIMSFAKRAGGDRTAPVKPT  5276

Range 3: 5038 to 5346 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 35/103(34%) 0/103(0%) Minus/Minus
Query       49  SALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNG  357
                +++  +   +  V  P Q +K  GE+     A+ +H   +  S   EEVE   L+ +S D E  PEG+  G+ + EL  IG++L+ +GSV++ +HEL EK  G
Subject   5038  ASMTGVHEGIHRVGGPLQTLKCQGEQGLGCLAKPQHHFGLCRSSTAEEVEAGALVRNSLDWEDGPEGIAGGMANSELREIGDELVRDGSVIDRYHELREKGRG  5346

Grapevine asteroid mosaic-associated virus isolate GV30, complete genome

Sequence ID: Length: 6719 Number of Matches: 5

Range 1: 5488 to 5817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 57/110(52%) 0/110(0%) Plus/Plus
Query       34  GCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL  363
                GC+RSPIALFAK+ + VDDG+I +KL SY  EF++GHSLGD+ W  LP+ AVP+QSA FDFFCRHA  ++K+  KLG V   + + +   L W +++ Y+ L+S  R A+
Subject   5488  GCVRSPIALFAKIAIAVDDGSISDKLASYLAEFALGHSLGDSLWQALPLSAVPFQSACFDFFCRHAPPELKLSLKLGEVPEDIIARVGANLRWATHAIYTTLSSAARWAI  5817

Range 2: 5487 to 5723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 46/79(58%) 0/79(0%) Minus/Minus
Query       33  TLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQP  269
                T PSL  +L S  AWRQKKSK A * GTA  G   Q+ SPRE P  NS  *E S S M PSST    LA  AMGER QP
Subject   5487  TSPSLRESLSSGGAWRQKKSKQAL*KGTAESGRACQRESPREWPRANSAR*EASLSEMEPSSTAMAILANRAMGERTQP  5723

Range 3: 5488 to 5793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 41/102(40%) 0/102(0%) Minus/Minus
Query       34  EHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA  339
                E  V GV  P Q+     ++   D A+ E +L++   MA EEV+   L GD  + E +PEGVTEGV   ELS IG +L+ +G++V+ + +LGE+ +GG + A
Subject   5488  EGGVDGVSGPAQVGADASDDVFRDFAELERELELGWGMAAEEVKAGALKGDG*EREGLPEGVTEGVAQGELSEIGGELVRDGAIVDGYGDLGEQGDGGTNAA  5793

Range 4: 5472 to 5723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 35/84(42%) 0/84(0%) Plus/Plus
Query       18  VCLVARLYPLPHCTFRQAHGVR*RRNH**EASLLCH*VLNRSLPR*RLLEPAPHRSCPLSVGCLRLLLSPCFRRHQGHVQTGQS  269
                +C    L   PH   RQ    R R  H *+A LL  *V    LPR*  L   P  S PLS   L LLL PC  R Q   Q  +S
Subject   5472  LCQQRWLRSFPHRPVRQDRHSRRRWLHL*QARLLSR*VRPGPLPR*LPLASPPALSRPLSERLL*LLLPPCPTRAQALSQARRS  5723

Range 5: 6194 to 6274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 13/27(48%) 0/27(0%) Plus/Plus
Query      281  SSPTCFTSCPGCLTPPTRCSILSSAEL  361
                SSP    S P   T  TR S LSS+ L
Subject   6194  SSPVVRPSAPSPPTTATRSSSLSSSSL  6274

Citrus sudden death-associated virus, complete genome

Sequence ID: Length: 6820 Number of Matches: 3

Range 1: 5569 to 5898 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 57/110(52%) 0/110(0%) Plus/Plus
Query       34  GCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL  363
                GC+RSP+ALFAKL + VDDG+I +K+ SY +EF++GHSLGD  W  LP+EAVP+QSA FDFFCR A   +K+   LG V  S+ + +   L W S++ Y+ L+S  R A+
Subject   5569  GCVRSPVALFAKLAIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAI  5898

Range 2: 5568 to 5804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 43/79(54%) 0/79(0%) Minus/Minus
Query       33  TLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQP  269
                T PS+  +L    A RQKKSK AD  GTAS G   Q+ SPRE P  NS   E   S M PSST   SLAK A GER QP
Subject   5568  TSPSMRESLRCLGARRQKKSKQADWKGTASRGKASQRWSPREWPRANSERYEAILSEMEPSSTAMASLAKRATGERTQP  5804

Range 3: 5569 to 5880 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 35/104(34%) 0/104(0%) Minus/Minus
Query       34  RIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA  345
                R E  V G+R P Q     G +  +D A+ E + +V    A EEV+  RL G+  +G+  PE V++GV   +   +    + +G+V++++ +LG++ +GGADTA
Subject   5569  RGECGVDGMRGPLQG*PDAGNDGFWDLAEHEREFEVSGGPAAEEVKAGRLEGNGLEGQSFPEMVSKGVAKSKFREV*GHFVRDGAVIDSYGQLGKESHGGADTA  5880

Nucleotide Sequence (373 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 5 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
373

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
188.5 328.1 24% 2.368e-47 33% NC_012484
184.8 361.2 23% 3.005e-46 37% NC_031692
183.4 325.0 29% 7.791e-46 29% NC_001793
177.0 316.6 21% 6.648e-44 38% NC_029063
172.4 389.6 32% 1.592e-42 35% NC_033828

Alignments

Grapevine Syrah Virus-1, complete genome

Sequence ID: Length: 6506 Number of Matches: 3

Range 1: 733 to 1104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 70/124(56%) 0/124(0%) Minus/Plus
Query        2  ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH  373
                ARD TRY +V+ +PP  + WF HD++ Y S   VA  F  CPHLE+L+ASLVVPPES FT+LS  P +YRY F G +L Y+LE NP HSY QP+ AL+WL+T +I+  +++L +T+LESWGPVH
Subject    733  ARDTTRYEQVAVAPPTQAVWFMHDALQYFSLSQVAAFFADCPHLEKLFASLVVPPESDFTNLSLFPEIYRYSFAGSRLNYQLEGNPGHSYSQPREALEWLKTTTIRCGNLYLTVTKLESWGPVH  1104

Range 2: 735 to 1100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 52/122(43%) 0/122(0%) Plus/Minus
Query        6  TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMSR  371
                TGPQ S  V  R      M++V SH RA  G      G  S  *+   P    R*  G ++R VK DSGGTT EA   SR GQ  K  AT  +++Y   SC+NQ    GG   T  *RV+SR
Subject    735  TGPQDSSLVTVR*RLPQRMVVVLSHSRASRGWLYEWPGLPSN**LRREPAKLYR*ISGKRERLVKSDSGGTTREAKSFSR*GQSAKKAATWESEKYCSASCINQTAWVGGATATCS*RVVSR  1100

Range 3: 832 to 1104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 30/91(33%) 0/91(0%) Plus/Minus
Query        2  VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSH  274
                V+G P  +  DG   V A +  G +P +    L V V  +  + I E  A +++ V    +G++ E  LRRDD+ S + LK+    E SSH
Subject    832  VHGAPRLELGDGEVEVAAANGGGFEPFEGFTRLAVRVAGVALQLIVEARASEAVPVNFREKGEVGEV*LRRDDEGSEKLLKVRAVREESSH  1104

Grapevine asteroid mosaic-associated virus isolate GV30, complete genome

Sequence ID: Length: 6719 Number of Matches: 4

Range 1: 748 to 1119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 70/124(56%) 0/124(0%) Minus/Plus
Query        2  ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH  373
                A+D TRYP  S+S P   T F HD++MY +   +   F +CPHL++LYASLVVPPES FTD+S  P LYRYRF G  L+Y LE NP+H+Y QP+SAL+WL+T +I+G  I L ++RL+SWG VH
Subject    748  AKDTTRYPTTSSSLPTEETAFMHDALMYYAPSQILDLFVSCPHLQKLYASLVVPPESDFTDVSLYPDLYRYRFQGSDLVYELERNPAHNYTQPRSALQWLKTTTIRGEGITLTVSRLDSWGSVH  1119

Range 2: 867 to 1115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 43/83(52%) 0/83(0%) Plus/Minus
Query        6  TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQ  254
                T PQ SKR   R +  P M++V SH+RA+ G  *LC G  S  *    P  R*R*R G ++ SVK DSGGTT EA    RWGQ
Subject    867  TEPQESKRETVRVIPSPRMVVVLSHWRAERGWV*LCAGLRSSS*TRSEPWKR*R*RSG*RETSVKSDSGGTTREA*SFWRWGQ  1115

Range 3: 753 to 830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 14/26(54%) 0/26(0%) Plus/Minus
Query      291  YMMESCVNQVLHSGGEVETSG*RVMS  368
                YM  SC+N V   G E E  G*RV+S
Subject    753  YMRASCMNAVSSVGREEEVVG*RVVS  830

Range 4: 859 to 1119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 32/87(37%) 0/87(0%) Plus/Minus
Query        2  VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLE  262
                V+G P  QA D      + D  GL+PL+   GL V V  + F+ +DE+ A++++AV+ G +  + E  L  DDQR V+ L++G   E
Subject    859  VDGAPRIQAGDSQGDPFSTDGSGLEPLEGGAGLGVVVCGVAFQLVDEVRALEAVAVEVGVKRDVGEVRLWGDDQRGVELLEVGAGDE  1119

Oat blue dwarf virus complete genome

Sequence ID: Length: 6509 Number of Matches: 4

Range 1: 535 to 906 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.4 bits(394) 0.0 70/124(56%) 0/124(0%) Minus/Plus
Query        2  ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH  373
                A+D  RYP  STS P+  T F HD++MY +   +   F +CP LE+LYASLVVPPESSFT +S  P LYR+RF GD+LIY LE NP+H+Y QP+SAL WL+T +I+G  + L ++RL+SWGP H
Subject    535  AKDTPRYPNTSTSLPDTETAFMHDALMYYTPAQIVDLFLSCPKLEKLYASLVVPPESSFTSISLHPDLYRFRFDGDRLIYELEGNPAHNYTQPRSALDWLRTTTIRGPGVSLTVSRLDSWGPCH  906

Range 2: 654 to 899 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 39/82(48%) 0/82(0%) Plus/Minus
Query        9  GPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQ  254
                GP  S     R    P M++V S  RAD G  *L  G  S  *+  SP  R R*R G ++  VKEDSGGTT EAY  S +GQ
Subject    654  GPHESSLDTVRETPGPRMVVVRSQSRADRGWV*LWAGLPSNS*IKRSPSKRKR*RSGWREIEVKEDSGGTTREAYSFSSFGQ  899

Range 3: 540 to 617 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 13/26(50%) 0/26(0%) Plus/Minus
Query      291  YMMESCVNQVLHSGGEVETSG*RVMS  368
                YM  SC+  V  SG EVE  G R +S
Subject    540  YMRASCMKAVSVSGREVEVLGYRGVS  617

Range 4: 595 to 900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 30/102(29%) 0/102(0%) Plus/Minus
Query        8  GTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMRE  313
                GTP  +   G +   + D    +P++    L V V  +  + I++ V +K+ AVK   E    E GL  DD+  VQ L++    E  ++     +H+GVM E
Subject    595  GTPRVEPGHGERNAWSADGGCAEPVEGGSRLGVVVGGVALQLINQTVPVKAKAVKIWMERDRGEGGLGGDDKGGVQFLELRAGKEQVNNLSGGVIHEGVMHE  900

Nectarine virus M isolate NeVM/12C51, complete genome

Sequence ID: Length: 6421 Number of Matches: 3

Range 1: 525 to 896 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 69/124(56%) 0/124(0%) Minus/Plus
Query        2  ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH  373
                A+D TRYP  S   P   T F HD++MY +   +   F   P L+++YASLVVPPES FTD+S  P LYR+RF GDQL+Y LE+NPSH+Y QPK AL WL T +I+  D+ L ++RLESWGPVH
Subject    525  AKDTTRYPTTSHDLPNFETLFMHDALMYYTPGQIVDLFLERPKLQKVYASLVVPPESQFTDISLFPELYRFRFEGDQLVYELEQNPSHNYIQPKRALDWLTTTTIRSADLTLTVSRLESWGPVH  896

Range 2: 585 to 896 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 40/104(38%) 0/104(0%) Plus/Minus
Query        2  VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMRE  313
                V+G P  +A D    V   D  G +P+Q  LGL V V  +L + ++ LV ++S AV+ G EG +SE   R DD+  V  L+ GT  E       R VH+GV+ E
Subject    585  VDGAPRLEAGDSESEVGRSDGGGGEPIQGSLGLDVVVGRVLLELVN*LVPLESEAVEFGEEGNVSELAFRWDDE*CVDLLEFGTLKEEVYDLAWRVVHEGVVHE  896

Range 3: 668 to 892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 36/75(48%) 0/75(0%) Plus/Minus
Query        6  TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEA  230
                TGPQ S+R   R  S   M++V S  +A LG  *L +GF S  * +WSP N  R*  G ++ SV   SGGTTS+A
Subject    668  TGPQDSRRETVRVRSADRMVVVVSQSKARLGWM*LWEGFCSSS*TNWSPSNLKR*SSGKREMSVNWLSGGTTSDA  892

Peach virus D isolate SK, complete genome

Sequence ID: Length: 6612 Number of Matches: 4

Range 1: 650 to 1021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.4 bits(370) 0.0 68/124(55%) 0/124(0%) Minus/Plus
Query        2  ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH  373
                A+D TRYPE S   P   T F HD++MY +   V   F    +L+RLYAS+V+PPESSFTDLS +PSLY+ +F  D L+Y+LE NP+H+Y+QP+SAL+WL T +I+G D  L I+ L+SWGPVH
Subject    650  AKDATRYPETSPDLPNTPTAFMHDALMYYTPAQVLDLFTKSQNLQRLYASVVIPPESSFTDLSLSPSLYQIQFEDDTLVYQLEGNPAHAYRQPRSALQWLSTTTIRGPDFDLTISILDSWGPVH  1021

Range 2: 655 to 1017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 54/121(45%) 0/121(0%) Plus/Minus
Query        6  TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMS  368
                TGP  S+  M R+ S P M++V SH RADLG  *   GF S  *   S  N   *R+G ++RSVKEDSGG T+EAY   R+  + K  +T +   Y+  SC+  V   G   E SG RV S
Subject    655  TGPHESRMEMVRSKSGPRMVVVDSHCRADLGWR*AWAGFPSS**TRVSSSNWIW*RDGERERSVKEDSGGMTTEAYSLCRF*LLVKRSSTCAGV*YISASCMKAVGVFGRSGEVSGYRVAS  1017

Range 3: 650 to 1021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 49/124(40%) 0/124(0%) Plus/Minus
Query        2  VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMREPSAAFRR*GRDFWVASDVAG  373
                V+  P  +  DG   V A D  G QPLQ   GL V V W+ F+ IDE V ++   V+R GE +I E G   DD RSVQ L++ T  E   H   R VH  VM E           F V S + G
Subject    650  VDWAPRVENGDGEVEVGAADGGGGQPLQGGSGLAVGVGWVSFQLIDEGVVLELDLVERRGEREIGEGGFGWDDDRSVQPLQVLTLGEEVEHLRWRVVHQRVMHEGGGGVWEVRGGFGVPSGILG  1021

Range 4: 771 to 965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 23/65(35%) 0/65(0%) Plus/Minus
Query       58  GCCWFAATSEQTWAAGNCAMDSLQGDR*AGRHEIDSGKERGRRTDQ*KRTQEGRPAKRTSAQDGD  252
                G  W+ AT+ + WA G   +  L  DR   R     G+E GR  D+*+R + G   KRT++   D
Subject    771  GWWWWTATAGRIWAGGRRGLGFLPADRRGCRPRTGFGRETGRERDR*RRIRVG*RPKRTASAGSD  965

Nucleotide Sequence (432 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 5 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
432

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
249.9 475.6 31% 9.727e-66 38% NC_012484
235.2 562.1 28% 2.523e-61 41% NC_031692
232.9 442.2 31% 1.235e-60 38% NC_001793
242.1 639.2 19% 2.152e-63 38% NC_029063
233.4 640.9 30% 8.987e-61 36% NC_033828

Alignments

Grapevine Syrah Virus-1, complete genome

Sequence ID: Length: 6506 Number of Matches: 3

Range 1: 3118 to 3519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.9 bits(539) 0.0 98/134(73%) 0/134(0%) Plus/Plus
Query       29  GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN  430
                G GKSYPI QLLK++  +++KIAVPTVELRNEWK  LK  P D WR+ TWESSLLKSARI+VIDE+YK+PRGYLDLAIHAD T  L I LGDPLQG YHST+ +SSN RLSSE+KHLQP+MD YCLWSHR+P++
Subject   3118  GCGKSYPIAQLLKSRAFKHFKIAVPTVELRNEWKGVLKVKPQDNWRISTWESSLLKSARILVIDEIYKMPRGYLDLAIHADPTIDLVIALGDPLQGVYHSTHSDSSNHRLSSEVKHLQPYMDYYCLWSHRVPQD  3519

Range 2: 3129 to 3512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 76/128(59%) 0/128(0%) Minus/Minus
Query       40  GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D  423
                G RWD RQ  SM G RCL SL RR L E   VEW +P  GSP+ M    V SA*MARSR*P G L* SSMT MRADL R DS V   Q S G  LR  FHSLR+STVGTAIL        RS  +G*D
Subject   3129  GTRWDQRQ**SM*GCRCLTSLLRRWLDESE*VEW*TPWSGSPKAMTKSIVGSA*MARSR*PLGIL*ISSMTKMRADLRRLDSHVLMRQLS*GLTLRTPFHSLRNSTVGTAILKCLNARDLRSWAIG*D  3512

Range 3: 3118 to 3519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 51/134(38%) 0/134(0%) Minus/Minus
Query       29  VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA  430
                + R+ VGP AV VH  L++LDLA E  +  + +S +V  L+RV + D+ +   VR+NG VQ+A   LV+LV D  A  FE+   P + +P + R   E   PF+A+ NS      +     L++L D VRL  A
Subject   3118  ILRHTVGPEAVVVHVRLQVLDLAAEAMVG*VRMS*MVDALERVPQSDD*VDRGVRVNGQVQIAPWHLVNLVYDQDAGGFEKA*FPRADAPVVLRFDFEDTFPFVAQFNSGHRNFEVLECARLEELGDWVRLATA  3519

Grapevine asteroid mosaic-associated virus isolate GV30, complete genome

Sequence ID: Length: 6719 Number of Matches: 5

Range 1: 3298 to 3699 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 93/134(69%) 0/134(0%) Plus/Plus
Query       29  GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN  430
                G GKSYPI +LL T   RN+K+AVPTVELR EWKD LK      WR+GTWESSLLK AR++VIDE+YK+PRGYLDLAIHAD T ++ I LGDPLQGEYHST+ +S+NARL  E +HL P++D YCLWSHRIPRN
Subject   3298  GCGKSYPIARLLATPAFRNFKVAVPTVELRAEWKDLLKLPGNAAWRIGTWESSLLKMARVLVIDEIYKMPRGYLDLAIHADPTIEMVIALGDPLQGEYHSTHASSTNARLLPEPRHLAPYLDYYCLWSHRIPRN  3699

Range 2: 3309 to 3701 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 81/131(62%) 0/131(0%) Minus/Minus
Query       40  TLRGMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D  432
                TLRGMRW  RQ  S  G R   S  RRAL++   VEWYSP RGSPR M    V SA*MARSR*PRG L* SSMT  RA L REDSQVP  Q +    LR SFHS RSSTVGTA L LR+  V R   +G*D
Subject   3309  TLRGMRWLQRQ**SR*GARWRGSGRRRALVDDAWVEWYSPWRGSPRAMTISMVGSA*MARSR*PRGIL*ISSMTRTRAILRREDSQVPMRQAALPGSLRRSFHSARSSTVGTATLKLRKAGVARRRAIG*D  3701

Range 3: 3298 to 3699 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 55/134(41%) 0/134(0%) Minus/Minus
Query       29  VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA  430
                VA NAV P  V V    E+  L  E GI G  +  VVL L+ V E D+ L G V +NG V++ +   VDL++D+ A   E+ GLPGS +P      LE + PF AEL+ W+G L +  G G ++  D V L  A
Subject   3298  VAGNAVAPETVVVEVGGEVARLGKEAGIGG*RVGRVVLALEGVPEGDDHLDGGVGVNGEVEITAGHFVDLIDDEDAGHLEEGGLPGSDAPGGVTGELEEIFPFSAELDGWNGDLEVTEGWGGEETGDRVGLATA  3699

Range 4: 3291 to 3533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 33/81(41%) 0/81(0%) Plus/Plus
Query       22  LARRREVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHS  264
                L R  +VLP+  +    +L  LQ  R N  AP+*ME  PQ      L   NLGVL  Q     RH   LQ + RL  P HS
Subject   3291  LPRLWQVLPYRPSPRHPSLP*LQGRRSNRRAPR*MERSPQAPR*RRLAHRNLGVLPPQDGPRPRHR*DLQNAPRLSRPRHS  3533

Range 5: 3581 to 3700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 17/40(42%) 0/40(0%) Plus/Plus
Query      312  KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAFLAT  431
                K STT   + P MP S    + S  + T T  G TAF AT
Subject   3581  KASTTLPTRHPPMPASFPSLATSPPTSTTTVSGATAFPAT  3700

Oat blue dwarf virus complete genome

Sequence ID: Length: 6509 Number of Matches: 3

Range 1: 2908 to 3309 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 88/134(66%) 0/134(0%) Plus/Plus
Query       29  GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN  430
                G GK++PI +LL T   R++K+AVPT ELR+EWK+ +K SP+  WR GTWESSLLKSARI+VIDE+YKLPRGYLDLAIH+DS+ +  I LGDPLQGEYHST+P+SSN+RL  E+ HL P++D YCLWS+R+P++
Subject   2908  GCGKTHPITKLLHTAAFRDFKLAVPTTELRSEWKELMKLSPSQAWRFGTWESSLLKSARILVIDEIYKLPRGYLDLAIHSDSSIEFVIALGDPLQGEYHSTHPSSSNSRLIPEVSHLAPYLDYYCLWSYRVPQD  3309

Range 2: 2925 to 3302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 67/126(53%) 0/126(0%) Minus/Minus
Query       46  GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG  423
                G R   RQ  S  G R L S  RR L E G VE YSP RGSPR + +    S  MARSR PRG+L* SS+T + A L REDSQVP  Q   GE    SFHS RSS VGTA L  R+  V+RS  +G
Subject   2925  GTR*LQRQ**SR*GARWLTSGMRRELEELG*VE*YSPCRGSPRAITNSMDESEWMARSRYPRGNL*ISSITRILALLRREDSQVPKRQA*EGESFMSSFHSDRSSVVGTASLKSRKAAVWRSLVIG  3302

Range 3: 2908 to 3309 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 51/134(38%) 0/134(0%) Minus/Minus
Query       29  VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA  430
                V  +AV P AV V    EM D   E  + G  +SGV+L L+R+++ D KL G V ++G*V+V S +LVDL++ +     E+ GLPG+++P +    L  + P   EL   DG   +A G G+++L D +   AA
Subject   2908  VLGDAVTPEAVVVEVGSEMADFGNEARVGGAGMSGVILALQRISQGDNKLDGRVGVDG*VEVPSGQLVDLIDHEDPGALEKGGLPGAEAPGLRG*ELHELFPLRPELGGRDGEFEVAEGGGVEELGDRMCFSAA  3309

Nectarine virus M isolate NeVM/12C51, complete genome

Sequence ID: Length: 6421 Number of Matches: 6

Range 1: 2916 to 3314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
242.1 bits(522) 0.0 94/133(71%) 0/133(0%) Plus/Plus
Query       29  GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPR  427
                G GKSYPI +LLKT   +++K+AVPT ELR EWKD LK SPA  WRLGTWESSLLK+AR++VIDE+YKLPRGYLDLAIHAD T +  I LGDPLQGEYHST+PNSSN+RL  E +HL P++D YCLWS R+P+
Subject   2916  GCGKSYPISRLLKTAAFKDHKVAVPTTELRAEWKDMLKPSPAHVWRLGTWESSLLKAARVLVIDEIYKLPRGYLDLAIHADPTIEFVIALGDPLQGEYHSTHPNSSNSRLVGETRHLAPYLDYYCLWSRRVPK  3314

Range 2: 2927 to 3310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 75/128(59%) 0/128(0%) Minus/Minus
Query       40  GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D  423
                G R   RQ  S  G +  +S  RR L E G VEWYSP RGSPR M +  V SA MARSR*PRGSL* SSMT  RA  SR+DSQVPS Q  AG+    SFHS RSS VGTA L      VFR  +MG*D
Subject   2927  GTRRLQRQ**SRYGAKWRVSPTRRELEELG*VEWYSPCRGSPRAMTNSIVGSAWMARSR*PRGSL*ISSMTRTRAAFSRDDSQVPSRQT*AGDGFSISFHSARSSVVGTATLWSLNAAVFRRREMG*D  3310

Range 3: 2916 to 3311 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 56/132(42%) 0/132(0%) Minus/Minus
Query       29  RNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA  424
                RN+  P AV V    +M     E G+ G+ +SGVVL L+RV E D++    V M+G V+VA+RKLVD +ND+ A  F+ R LPGS+SP +SR  L+ + PF ++ +      V+    GLQ+  DG+ L AA
Subject   2916  RNSTTPEAVVVEVRGQMAGFTHEAGVGGVGMSGVVLALQRVTEGDDEFNCGVGMDGEVKVAARKLVDFINDEDAGGFQ*RRLPGSESPDMSRGWLQHIFPFSSKFSGGHRDFVVFERGGLQEAGDGIGLTAA  3311

Range 4: 2921 to 3154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 34/78(44%) 0/78(0%) Plus/Plus
Query       34  REVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSC  267
                R VL HL   ED+ + + Q    + *   *ME   +   C  L T NLGV+S +     RH*  LQASSRLP P H C
Subject   2921  R*VLSHLPPPEDRRVQRPQSRGAHH*TSS*MERYAEAIPCSCLATRNLGVVSTESRPRPRH**NLQASSRLP*PRHPC  3154

Range 5: 3199 to 3315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 17/39(44%) 0/39(0%) Plus/Plus
Query      312  KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAFLA  428
                K STTPLI  P  P S  + +I   + T TA G   FL+
Subject   3199  KASTTPLIPTPPTPASWVKPAIWPRTSTTTASGVVEFLS  3315

Range 6: 2920 to 3153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 30/78(38%) 0/78(0%) Minus/Minus
Query       33  HEWLGPGSLEEACRPRQ*RLCEQI*AERTPRFPVSNDQQAKT*GSPSIHCGAQQLGRLSCNCDRAWSSEADRWGKTSR  266
                H W G GS EEACR  Q*R   ++  E TPRF V+  +Q       SI    Q      C      SS   RW +T R
Subject   2920  HGWRGQGSREEACRFHQ*RGRGRLSVETTPRFRVARHEQGMASAYLSIQLEVQWWAPRLCGL*TRRSSGGGRWDRTYR  3153

Peach virus D isolate SK, complete genome

Sequence ID: Length: 6612 Number of Matches: 8

Range 1: 3197 to 3595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.4 bits(503) 0.0 92/133(69%) 0/133(0%) Plus/Plus
Query       29  GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPR  427
                G GKSYPI +LL       +KIA+PTVELRNEWK ++K  PA  WR+ TWESSLLKSAR++VIDEVYKLPRGY+DLAIHAD + +  I+LGDPLQGEYHST+P+SSN RLSSE+KHL+P++D YCLWS RIP+
Subject   3197  GCGKSYPIQKLLTHPAFAQHKIALPTVELRNEWKAAMKPRPAQVWRISTWESSLLKSARVLVIDEVYKLPRGYVDLAIHADPSVEFVILLGDPLQGEYHSTHPDSSNHRLSSELKHLRPYLDYYCLWSRRIPK  3595

Range 2: 3208 to 3591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 73/128(57%) 0/128(0%) Minus/Minus
Query       40  GMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D  423
                GMR   RQ  S  G RCL S +RR L E G VEWYSP RGSPR M +    SA*MARS  PRGSL*TSS+T  RAD S E SQV   Q  AG     +FHS RSSTVG+AIL   +    RS  +G*D
Subject   3208  GMRRLQRQ**SRYGRRCLSSEDRRWLDESGWVEWYSPWRGSPRRMTNSTDGSA*MARSTYPRGSL*TSSITRTRADFSSELSQVEMRQTCAGRGFIAAFHSFRSSTVGSAILCCAKAGWVRSFWIG*D  3591

Range 3: 3197 to 3589 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 52/131(40%) 0/131(0%) Minus/Minus
Query       29  NAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA  421
                NA  P AV V  W +M +L G+  +  +W+  VVL+L+RV  +D++L   VR+NG V + S + V+LV+ + +    QR LPG  +P +   RL    PFI++L+SW+  LV+  G   +KL D V L AA
Subject   3197  NAAAPKAVVVKIWSQMFELGGQAVVG*VWVGRVVLSLERVP*EDDELY*WVRVNGEVDIPSWEFVNLVDHEDSCGL*QRALPGGDAPDLCGARLHRGFPFISQLHSWERDLVLCEGWVGEKLLDWVGLAAA  3589

Range 4: 3202 to 3438 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 32/79(41%) 0/79(0%) Plus/Plus
Query       34  REVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSCG  270
                R+VLP+  AS   +L   QD  PNC A +*ME   +     SL   +LG L+A++ +  R  RGLQ  +R+  P HS G
Subject   3202  RQVLPNPEASHPPSLRTAQDRAPNCGAAK*MESRDEAAPRTSLAHLHLGELAAKVRTSPRDRRGLQTPTRVCRPRHSRG  3438

Range 5: 3480 to 3590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 15/37(41%) 0/37(0%) Plus/Plus
Query      312  KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAF  422
                K STT   Q       P  S+I +H  T TA+G  AF
Subject   3480  KESTTRPTQTHPTTACPPSSNICDHILTTTAFGAAAF  3590

Range 6: 3474 to 3590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 18/39(46%) 0/39(0%) Minus/Minus
Query      306  ECGGTIGSTCP*MVGDA*SRWRDGHCWNLD*WSGTHLEE  422
                ECGG+ GS+   MV D *+R   G   +L   SGT L E
Subject   3474  ECGGSKGSSSQDMVADV*ARRTGGGWMSLGGSSGTLLGE  3590

Range 7: 3201 to 3296 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 15/32(47%) 0/32(0%) Minus/Minus
Query       33  SIHCGAQQLGRLSCNCDRAWSSEADRWGKTSR  128
                SIH  A QLG  SC   R    EA   G+T R
Subject   3201  SIHFAAPQLGARSCAVRRLGG*EASGLGRTCR  3296

Range 8: 3339 to 3437 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 12/33(36%) 0/33(0%) Minus/Minus
Query      171  PHEWLGPGSLEEACRPRQ*RLCEQI*AERTPRF  269
                P EW G  +L   C+PR+ R   +  A  +PR+
Subject   3339  PREWRGRHTLVGVCKPRRSRGLVRTLAASSPRW  3437

Nucleotide Sequence (734 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 5 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
74
148
222
296
370
444
518
592
666
734

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
208.2 612.6 39% 1.602e-71 38% NC_012484
189.4 380.8 28% 3.201e-47 38% NC_002786
188.9 438.2 37% 4.398e-47 46% NC_015522
163.3 425.1 46% 2.313e-41 43% NC_031692
134.9 370.2 47% 1.849e-42 41% NC_001793

Alignments

Grapevine Syrah Virus-1, complete genome

Sequence ID: Length: 6506 Number of Matches: 9

Range 1: 5311 to 5769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.2 bits(448) 0.0 85/153(56%) 0/153(0%) Minus/Plus
Query      273  GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAPRVLTGGLHLP  731
                G +R P ALFAK+ + V+D +I +K+ SYATEF+IGHSLGDA W+LLP+E V YQSAVFDF CR+AP ++K++FKLG VE S+   +    +W SY+ Y  LNS QR+ L  ++ + HFPGD+ EV++LQGELL +FSM      LTGGL LP
Subject   5311  GAVRMPRALFAKIFIAVEDASIADKMASYATEFAIGHSLGDALWSLLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLLLP  5769

Range 2: 5905 to 6048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 20/48(42%) 0/48(0%) Minus/Plus
Query        3  SLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITHLEVV  146
                ++++PFQWVAL++KS+S  FTVD   + +L +L  P+R   +  LE +
Subject   5905  AITVPFQWVALVVKSESTIFTVDPPRAKSLTQLIGPYRHARLLSLEAI  6048

Range 3: 5782 to 5892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 19/37(51%) 0/37(0%) Minus/Plus
Query      156  APMSNETQLPISGRPSRDDHRSDPQPSLPLAPQVKES  266
                APMS+++    +      DHR DPQPSLPLAP V+E+
Subject   5782  APMSDDSLAGRARSQRDPDHRVDPQPSLPLAPSVQET  5892

Range 4: 5310 to 5555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 48/82(59%) 0/82(0%) Plus/Minus
Query      487  ETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP  732
                E ST PSL  +L+S GA RQ+KS TAD * T S GRR Q ASPR  PM NSVA*E   S M  SST    LA SA G R  P
Subject   5310  ERSTGPSLKSSLSSRGALRQRKSKTAD**TTSSTGRRDQSASPRLCPMANSVA*EAILSAMEASSTAMKILANSALGMRTAP  5555

Range 5: 5587 to 5727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 22/47(47%) 0/47(0%) Plus/Minus
Query      315  H*KCVEQFTL*LGNLFGITREMLTNGFSTEGSALDGVQHGVCGVREP  455
                H*+ ++QFTL LGN  GI RE+     S E  AL  ++  V GVR P
Subject   5587  H*EALKQFTLKLGNFGGIAREVELGRASEEHLALS*IEEAVEGVRSP  5727

Range 6: 5916 to 6017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 15/34(44%) 0/34(0%) Plus/Minus
Query       34  RNGSVSFFKVVEAARSTVKAAESLFIMRATHWKG  135
                R G +S+ + +    STVK  +S F   ATHWKG
Subject   5916  R*GPMSWVRDLARGGSTVKMVDSDFTTSATHWKG  6017

Range 7: 5768 to 5869 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 13/34(38%) 0/34(0%) Plus/Minus
Query      179  EEEKAEDQNDGHREKDDQRWAAGSHLTWVRTRED  280
                E EKAEDQ+D     +  R    SH T  R +++
Subject   5768  EAEKAEDQHDDQDRVESGRGQRASHQTLERRQQE  5869

Range 8: 5311 to 5541 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 33/77(43%) 0/77(0%) Plus/Minus
Query      501  AEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAA  731
                AE E   +  RS+AA+EVE G L+ + LDRE+ PE V + V +GE SG+   L+ DG V++++ +LGE+     N A
Subject   5311  AELEEQFEFPRSIAAKEVEDGRLIDNLLDREEGPERVAETVPNGELSGIRSHLVSDGGVLNSDEDLGEQCPGHANCA  5541

Range 9: 5664 to 5768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 20/35(57%) 0/35(0%) Plus/Minus
Query      274  GRCRPPVRTRGADDIENVWSNSPCSSVTSLESPGK  378
                GR RPPV  R    IE + SNSP S  TS  SPGK
Subject   5664  GRSRPPVSGRVGCIIEKL*SNSP*SWETSGASPGK  5768

Maize rayado fino virus isolate Costa Rican, complete genome

Sequence ID: Length: 6305 Number of Matches: 3

Range 1: 5023 to 5451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 77/143(54%) 0/143(0%) Minus/Plus
Query      303  GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAP  731
                G +RSP ALFAKLM+ VDDG+I +KL++Y TEF++GHS GDAFW +LP+E+VPYQSA FDFFCR AP   KVM +LG    SL S     L W S+S Y+++NS  RR L   + R     +  EV++LQGELLH F     P
Subject   5023  GAVRSPPALFAKLMIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP  5451

Range 2: 5022 to 5342 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 55/107(51%) 0/107(0%) Plus/Minus
Query      412  RWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP  732
                R +EF   Y E+E+     +  E R++   PS N+TL  +GA RQKKS  A W*GT S GR  QKASP EWP  NSV *  S S M PSST  MS AK A G+R  P
Subject   5022  R*LEFMRAYTEWEAHFRPSNARESRDSGASPSRNITLACAGARRQKKSKQALW*GTASTGRMVQKASPEEWPTVNSVR*AMSLSEMDPSSTAIMSFAKRAGGDRTAP  5342

Range 3: 5047 to 5346 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 38/100(38%) 0/100(0%) Plus/Minus
Query      408  SALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEE  707
                +++ GV  G+  V  P + ++  GE+G    A+ +H   + RS  AEEVE G LVR+ LD E  PEG+   +A+ E   +G++L+ DG+V+   HEL E+
Subject   5047  ASMTGVHEGIHRVGGPLQTLKCQGEQGLGCLAKPQHHFGLCRSSTAEEVEAGALVRNSLDWEDGPEGIAGGMANSELREIGDELVRDGSVIDRYHELREK  5346

Switchgrass mosaic virus, complete genome

Sequence ID: Length: 6423 Number of Matches: 4

Range 1: 5128 to 5556 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.9 bits(406) 0.0 77/143(54%) 0/143(0%) Minus/Plus
Query      303  GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAP  731
                G +RSP ALFAKLM+ VDD +I +KL++Y TEF++GHSLGDAFW +LP+E+VPYQSA FDFFCR AP   KVM +LG    SL S     L W S+S Y+++NS  RR L   + R     +  EV++LQGELLH F     P
Subject   5128  GAVRSPPALFAKLMIAVDDESIDDKLIAYLTEFTVGHSLGDAFWTILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP  5556

Range 2: 5127 to 5528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 64/134(48%) 0/134(0%) Plus/Minus
Query      331  SNSPCSSVTSLESPGKC*RTAFPRRALRWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP  732
                SNSP S  TS  S  +  R    R   R +EF     E+++    W   ++R++   PSL+MTL  +GA RQKKS  A W*GT S GR  QKASPREWP  NSV *  S S +  SST  MSLAK A G+R  P
Subject   5127  SNSP*S*ETSGSSGRERGRRELWRSWRR*LEFMRA*TEWDAHFKPWKAMDRRDSGASPSLSMTLACAGARRQKKSKHALW*GTVSTGRMVQKASPREWPTVNSVR*AMSLSSIDSSSTAIMSLAKRAGGDRTAP  5528

Range 3: 5152 to 5346 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 34/65(52%) 0/65(0%) Plus/Minus
Query      513  HDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEE  707
                HD  +    +AEEVE   LVRDGLD E  PEGV +R+A  E   VG++L++D  VVH +HELG+E
Subject   5152  HDFGLRWGASAEEVETRALVRDGLDGEDGPEGVAKRMAHRELGEVGDELVVDRLVVHGDHELGKE  5346

Range 4: 5148 to 5351 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 31/68(46%) 0/68(0%) Minus/Plus
Query      508  RALRQAHGLCGRRYHPREASLLRH*ILHRPLSG*RLLESSPDRVRPLPISRVRLLLPPRSGGRQGHVQ  711
                R L QAH   GRR   R+A  L H +   P S  RLL+  P R RPLP    RLLLP R    Q H +
Subject   5148  RPLCQAHDRRGRRVDRRQAHRLPHRVHGGPFSWRRLLDHPPRRDRPLPERVFRLLLPTRPSASQSHAK  5351

Grapevine asteroid mosaic-associated virus isolate GV30, complete genome

Sequence ID: Length: 6719 Number of Matches: 5

Range 1: 5488 to 5892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
163.3 bits(350) 0.0 63/135(47%) 0/135(0%) Minus/Plus
Query      327  GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLH  731
                GC+RSP+ALFAK+ + VDDG+I +KL SY  EF++GHSLGD+ W  LP+ +VP+QSA FDFFCRHAP ++K+  KLG V   + + +   L W +++ Y+ L+S  R A+           +  +V+  QGELLH
Subject   5488  GCVRSPIALFAKIAIAVDDGSISDKLASYLAEFALGHSLGDSLWQALPLSAVPFQSACFDFFCRHAPPELKLSLKLGEVPEDIIARVGANLRWATHAIYTTLSSAARWAILHSRRSTRSQPEDPDVSRYQGELLH  5892

Range 2: 5985 to 6032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 8/16(50%) 0/16(0%) Minus/Plus
Query      233  IFPRPHPCQMRPSCPS  280
                + PRP P   +P CPS
Subject   5985  LLPRPRPIHGQPQCPS  6032

Range 3: 5488 to 5817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 47/110(43%) 0/110(0%) Plus/Minus
Query      402  EGSALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAA  731
                +G A  G + GV GV  P ++     ++     AE E +L++   +AAEEV+ G L  DG +RE +PEGVT+ VA GE S +G +L+ DG +V    +LGE+ D GTNAA
Subject   5488  DGPASGGREGGVDGVSGPAQVGADASDDVFRDFAELERELELGWGMAAEEVKAGALKGDG*EREGLPEGVTEGVAQGELSEIGGELVRDGAIVDGYGDLGEQGDGGTNAA  5817

Range 4: 5487 to 5729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 45/81(56%) 0/81(0%) Plus/Minus
Query      490  TSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP  732
                + T PSL  +L+S GAWRQKKS  A   GT   GR  Q+ SPREWP  NS  *E S S M PSST    LA  A GER QP
Subject   5487  SGTSPSLRESLSSGGAWRQKKSKQAL*KGTAESGRACQRESPREWPRANSAR*EASLSEMEPSSTAMAILANRAMGERTQP  5729

Range 5: 5489 to 5659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 30/57(53%) 0/57(0%) Minus/Plus
Query      560  AAFVPLSRSSPSSWFVWTTVPSKRSFSPTPLNSPSATLWVTPSGIFSRSSPSLTNQP  730
                AAFVP S  SP S    T  PS  S  P  L+SP AT  VTPSG  SRS PS    P
Subject   5489  AAFVPPSPCSPRSP*PSTMAPSLTSSPPISLSSPWATPSVTPSGKPSRSQPSPFRAP  5659

Oat blue dwarf virus complete genome

Sequence ID: Length: 6509 Number of Matches: 6

Range 1: 5164 to 5430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 49/89(55%) 0/89(0%) Minus/Plus
Query      465  GCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLH  731
                GC+RSP+ALFAKL + VDD +I +KL +Y  EF++GHSLGD+ W+ LP+ +VP+QSA FDFFCR AP D+K+   LG V  ++   L H
Subject   5164  GCVRSPIALFAKLAIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRDLKLALHLGEVPETIIQRLSH  5430

Range 2: 5422 to 5571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 21/50(42%) 0/50(0%) Minus/Plus
Query      321  LHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTF  470
                L  LSWLS++ YS+L S  R A+   + +     +   V+ LQGELL TF
Subject   5422  LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGELLQTF  5571

Range 3: 5737 to 5811 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 15/25(60%) 0/25(0%) Minus/Plus
Query      156  GRPSRDDHRSDPQPSLPLAPQVKES  230
                G P   D R+D QPSLPLAP++ ES
Subject   5737  GPPPASDDRTDRQPSLPLAPRIVES  5811

Range 4: 5830 to 5895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 9/22(41%) 0/22(0%) Minus/Plus
Query       78  LSIPFQWVALIIKSDSAAFTVD  143
                + +PFQW       DSA F  D
Subject   5830  VDVPFQWAVASYAGDSAKFLTD  5895

Range 5: 5163 to 5429 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 41/89(46%) 0/89(0%) Plus/Minus
Query      466  WSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP  732
                W R     + T P    +  S GA RQKKS  AD  GT   GR  Q+ SPRE P  NS+    S S M  SST   SLAK A G+R QP
Subject   5163  WERRWMMVSGTSPR*RASFRSRGARRQKKSKQAD*KGTADRGRADQRESPRE*PTANSMRYAASLSEMDESSTAMASLAKRAMGDRTQP  5429

Range 6: 5164 to 5394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 33/77(43%) 0/77(0%) Plus/Minus
Query      501  AEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAA  731
                A+ + +L +  S AAEE+E G*L  DG   E  P+ V +RV D E   V  +L+ DG VV  + EL EE D  ++AA
Subject   5164  AQVKGEL*IAGSAAAEEIETG*LKGDGGQGEGGPKRVAERVTDRELHEVCGELVGDG*VVDGDGELSEEGDGRSDAA  5394

Nucleotide Sequence (584 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 5 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
59
118
177
236
295
354
413
472
531
584

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
134.9 290.8 19% 1.42e-39 47% NC_012484
104.6 161.1 16% 7.886e-22 42% NC_015522
104.2 149.7 7% 1.083e-21 46% NC_002786
83.1 167.8 10% 2.674e-16 39% NC_006950
56.5 138.8 21% 1.551e-18 42% NC_001793

Alignments

Grapevine Syrah Virus-1, complete genome

Sequence ID: Length: 6506 Number of Matches: 5

Range 1: 5446 to 5769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 56/108(52%) 0/108(0%) Plus/Plus
Query        2  LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLILP  325
                LLP++ V YQSAVFDF CR+A  ++K++FKLG VE S+   +    +W SY+ Y  LNS QR+ L  ++ + HFPGD+ EV++LQGELL +FSM      LTGGL+LP
Subject   5446  LLPVEEVVYQSAVFDFLCRNAPRELKLLFKLGPVERSVVEAVQEFATWASYAFYRFLNSAQRKVLLTRSPQLHFPGDAPEVSQLQGELLQSFSMMQPTLPLTGGLLLP  5769

Range 2: 5782 to 5895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 20/38(53%) 0/38(0%) Plus/Plus
Query      332  APMSNEAQLPVSGRPSRDDHRSDPQPTLPLAPKVQESP  445
                APMS+++    +      DHR DPQP+LPLAP VQE+P
Subject   5782  APMSDDSLAGRARSQRDPDHRVDPQPSLPLAPSVQETP  5895

Range 3: 5445 to 5555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 21/37(57%) 0/37(0%) Minus/Minus
Query        1  ETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR  111
                E ST P+L  +L S  A RQ+KSKTAD * T S G R
Subject   5445  ERSTGPSLKSSLSSRGALRQRKSKTAD**TTSSTGRR  5555

Range 4: 5664 to 5768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 21/35(60%) 0/35(0%) Minus/Minus
Query      220  GRIKPPVRTRGVDDIEKV*SNSPCSSVTSLESPGK  324
                GR +PPV  R    IEK+*SNSP S  TS  SPGK
Subject   5664  GRSRPPVSGRVGCIIEKL*SNSP*SWETSGASPGK  5768

Range 5: 5781 to 5894 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 18/38(47%) 0/38(0%) Minus/Minus
Query      331  GDS*TLGARGRVG*GSERWSSREGRPETGS*ASFDMGA  444
                G S T GARGR G*GS R S         +  S D+GA
Subject   5781  GVSCTEGARGREG*GSTR*SGSR*ERARPASESSDIGA  5894

Switchgrass mosaic virus, complete genome

Sequence ID: Length: 6423 Number of Matches: 2

Range 1: 5263 to 5556 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 45/98(46%) 0/98(0%) Plus/Plus
Query        2  LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTP  295
                +LP+++VPYQSA FDFFCR A    KVM +LG    SL S     L W S+S Y+++NS  RR L   + R     +  EV++LQGELLH F     P
Subject   5263  ILPVETVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSMAFQGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP  5556

Range 2: 5268 to 5531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 37/88(42%) 0/88(0%) Minus/Minus
Query        7  *SNSPCSSVTSLESPGKCWRTAFPRRALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIG  270
                *SNSP S  TS  S  +  R    R   R  E    * E D+    W   + R++   P+L+MTL  + A RQKKSK A W*GT S G
Subject   5268  *SNSP*S*ETSGSSGRERGRRELWRSWRR*LEFMRA*TEWDAHFKPWKAMDRRDSGASPSLSMTLACAGARRQKKSKHALW*GTVSTG  5531

Maize rayado fino virus isolate Costa Rican, complete genome

Sequence ID: Length: 6305 Number of Matches: 2

Range 1: 5158 to 5451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 45/98(46%) 0/98(0%) Plus/Plus
Query        2  LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTP  295
                +LP+++VPYQSA FDFFCR A    KVM +LG    SL S     L W S+S Y+++NS  RR L   + R     +  EV++LQGELLH F     P
Subject   5158  ILPVEAVPYQSACFDFFCRRAPAQAKVMLRLGEAPESLLSLAFEGLKWASHSVYALMNSSHRRQLLHSSRRPRSLPEDPEVSQLQGELLHQFQSLHLP  5451

Range 2: 5163 to 5276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 20/38(53%) 0/38(0%) Minus/Minus
Query        7  ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIG  120
                E+R++   P+ N+TL  + A RQKKSK A W*GT S G
Subject   5163  ESRDSGASPSRNITLACAGARRQKKSKQALW*GTASTG  5276

Citrus sudden death-associated virus, complete genome

Sequence ID: Length: 6820 Number of Matches: 4

Range 1: 5707 to 5985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 36/93(39%) 0/93(0%) Plus/Plus
Query        5  LPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSM  283
                LP+++VP+QSA FDFFCR A   +K+   LG V  S+ + +   L W S++ Y+ L+S  R A+   +       D  + T LQGELL  F +
Subject   5707  LPLEAVPFQSACFDFFCRRAPRHLKLSLMLGEVPESIIARIGSSLKWASHAIYTTLSSAARVAILRSSRNSRSMPDDPDTTLLQGELLQHFQV  5985

Range 2: 5993 to 6037 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 9/15(60%) 0/15(0%) Plus/Plus
Query      339  CQMKLSCPSLVVLLV  383
                C + LSC SLVV L+
Subject   5993  CNLTLSCLSLVVPLL  6037

Range 3: 5709 to 5813 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 17/35(49%) 0/35(0%) Minus/Minus
Query        7  ETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIG  111
                ++ T P++  +L    A RQKKSK ADW GT S G
Subject   5709  DSGTSPSMRESLRCLGARRQKKSKQADWKGTASRG  5813

Range 4: 5940 to 5978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 10/13(77%) 0/13(0%) Minus/Minus
Query      238  KV*SNSPCSSVTS  276
                K *SNSPCS V S
Subject   5940  KC*SNSPCSRVVS  5978

Oat blue dwarf virus complete genome

Sequence ID: Length: 6509 Number of Matches: 3

Range 1: 5302 to 5430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 21/43(49%) 0/43(0%) Plus/Plus
Query        5  LPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLH  133
                LP+ +VP+QSA FDFFCR A  D+K+   LG V  ++   L H
Subject   5302  LPLSAVPFQSACFDFFCRRAPRDLKLALHLGEVPETIIQRLSH  5430

Range 2: 5422 to 5571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 21/50(42%) 0/50(0%) Plus/Plus
Query      128  LHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTF  277
                L  LSWLS++ YS+L S  R A+   + +     +   V+ LQGELL TF
Subject   5422  LSHLSWLSHAVYSLLPSRLRLAILHSSRQHRSLPEDPAVSSLQGELLQTF  5571

Range 3: 5737 to 5826 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 15/30(50%) 0/30(0%) Plus/Plus
Query      368  GRPSRDDHRSDPQPTLPLAPKVQESPALTP  457
                G P   D R+D QP+LPLAP++ ES    P
Subject   5737  GPPPASDDRTDRQPSLPLAPRIVESSLAVP  5826