Nucleotide Sequence (334 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
253.5 | 1318.6 | 29% | 6.959e-66 | 80% | KY211673.1 | |
251.7 | 1230.0 | 28% | 2.479e-65 | 79% | KC149510.1 | |
251.7 | 1230.0 | 28% | 2.479e-65 | 79% | NC_021480.1 | |
52.8 | 83.7 | 16% | 3.692e-09 | 31% | KY607769.1 | |
52.8 | 83.7 | 16% | 3.692e-09 | 31% | NC_033817.1 |
Alignments
Grapevine satellite virus isolate Askeri, complete genome
Sequence ID: KY211673.1 Length: 1048 Number of Matches: 8
Range 1: 612 to 935 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 103/108(95%) | 0/108(0%) | Plus/Plus |
Query 1 RDNSTPMKDLVFFMRKANFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDANSIKNKIIVRNFDLM*VRVGAIRPNTP 324 RDNSTPMKDLVFFMRK NFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCD NSIKNKIIVRNFDLM*VRVGA R N+P Subject 612 RDNSTPMKDLVFFMRKVNFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDTNSIKNKIIVRNFDLM*VRVGACRLNSP 935
Range 2: 612 to 935 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.6 bits(510) | 0.0 | 102/108(94%) | 0/108(0%) | Minus/Minus |
Query 1 GCVWTNCAHPDSH*VKISYNNLILNTIRVTETAKCYQL*EFITYR*RISNAI*KFFTLITKIEGDADVSTVPPPTDIVGHHKIVNIVIDEVCLSHEKY*IFHGCAVIS 324 G V T CAHPDSH*VKISYNNLILNTIRVTETAKCYQL*EFITYR*RISN I*KFFTLITK+EGDADVSTVPPPTDIVGHHKIVNIVIDEV LSHEKY*IFHGCAVIS Subject 612 G*VKTTCAHPDSH*VKISYNNLILNTIRVTETAKCYQL*EFITYR*RISNTI*KFFTLITKVEGDADVSTVPPPTDIVGHHKIVNIVIDEVYLSHEKY*IFHGCAVIS 935
Range 3: 614 to 925 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.2 bits(483) | 0.0 | 100/104(96%) | 0/104(0%) | Plus/Plus |
Query 3 R*QHTHERSSIFHEKGKLRR*RCLRFCDGPLCQLGVVRWKHRHHLRFW**V*RIFKSRY*SVSGK**ILTVDSI*PSL*RE*Y*E*DYCKKF*LNVSPGGRNSS 314 R*QHTHERSSIFHEKGKLRR*RCLRFCDGPLCQLGVVRWKHRHHLR W**V*RIFKS Y*SVSGK**ILTVDSI*PSL* E*Y*E*DYCKKF*LNVSPGGR SS Subject 614 R*QHTHERSSIFHEKGKLRR*RCLRFCDGPLCQLGVVRWKHRHHLRLW**V*RIFKSCY*SVSGK**ILTVDSI*PSL*HE*Y*E*DYCKKF*LNVSPGGRMSS 925
Range 4: 613 to 849 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 77/79(97%) | 0/79(0%) | Minus/Minus |
Query 2 HRDG*MLSTVRIYYLPLTDQ*RDLKILYTYYQNRR*CRCFHRTTPN*HSGPSQNRKHRHRRSLPFS*KILDLSWVCCYL 238 HRDG*MLSTVRIYYLPLTDQ* DLKILYTYYQ+RR*CRCFHRTTPN*HSGPSQNRKHRHRRSLPFS*KILDLSWVCCYL Subject 613 HRDG*MLSTVRIYYLPLTDQ*HDLKILYTYYQSRR*CRCFHRTTPN*HSGPSQNRKHRHRRSLPFS*KILDLSWVCCYL 849
Range 5: 877 to 924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 14/16(88%) | 0/16(0%) | Minus/Minus |
Query 266 DELRPPGLTLSQNFLQ 313 D++RPPGLTLSQNFLQ Subject 877 DDMRPPGLTLSQNFLQ 924
Range 6: 614 to 934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 101/107(94%) | 0/107(0%) | Minus/Minus |
Query 3 GVFGRIAPTRTHIKSKXXXXXXXXXXFASQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVMPMFPPYHPQLT*WAIXXXXXXXXXKFAFLMKNTRSFMGVLLS 323 G R APTRTHIKSKFLTIILFLILF SQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVMPMFPPYHPQLT*WAITKS*TSSSTKF FLMKNTRSFMGVLLS Subject 614 GELRRHAPTRTHIKSKFLTIILFLILFVSQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVMPMFPPYHPQLT*WAITKS*TSSSTKFTFLMKNTRSFMGVLLS 934
Range 7: 613 to 852 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 77/80(96%) | 0/80(0%) | Plus/Plus |
Query 2 EITAHP*KI*YFS*ERQTSSMTMFTIL*WPTMSVGGGTVETSASPSILVISVKNF*IALLIRQR*VINSHS**HLAVSVT 241 EITAHP*KI*YFS*ER TSSMTMFTIL*WPTMSVGGGTVETSASPS LVISVKNF*I LLIRQR*VINSHS**HLAVSVT Subject 613 EITAHP*KI*YFS*ER*TSSMTMFTIL*WPTMSVGGGTVETSASPSTLVISVKNF*IVLLIRQR*VINSHS**HLAVSVT 852
Grapevine satellite virus isolate AUD46129, complete sequence
Sequence ID: KC149510.1 Length: 1060 Number of Matches: 7
Range 1: 635 to 958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 102/108(94%) | 0/108(0%) | Plus/Plus |
Query 1 RDNSTPMKDLVFFMRKANFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDANSIKNKIIVRNFDLM*VRVGAIRPNTP 324 RDNSTPMKDLVFFMRK NFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCD NSIKNKIIVRNFDLM*VRVG R N+P Subject 635 RDNSTPMKDLVFFMRKVNFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDTNSIKNKIIVRNFDLM*VRVGVCRLNSP 958
Range 2: 635 to 958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 94/108(87%) | 0/108(0%) | Minus/Minus |
Query 1 GCVWTNCAHPDSH*VKISYNNLILNTIRVTETAKCYQL*EFITYR*RISNAI*KFFTLITKIEGDADVSTVPPPTDIVGHHKIVNIVIDEVCLSHEKY*IFHGCAVIS 324 G V T AHPDSH*+KISYNNLIL TIRVTETAKCYQL*EFITYR*RISN I*KFFT I KIEG+ DVSTVP PTDI+GHHKIVNIVIDEV LSHEKY*IFHGCAVIS Subject 635 G*VKTTYAHPDSH*IKISYNNLILYTIRVTETAKCYQL*EFITYR*RISNTI*KFFTFIAKIEGNTDVSTVPTPTDIMGHHKIVNIVIDEVYLSHEKY*IFHGCAVIS 958
Range 3: 637 to 948 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 93/104(89%) | 0/104(0%) | Plus/Plus |
Query 3 R*QHTHERSSIFHEKGKLRR*RCLRFCDGPLCQLGVVRWKHRHHLRFW**V*RIFKSRY*SVSGK**ILTVDSI*PSL*RE*Y*E*DYCKKF*LNVSPGGRNSS 314 R*QHTHER SIFHEKGKLRR*RCLRFCDGPLCQLG+VRWKHR++LRFW *+*RIFKS Y*SVSGK**ILTVDSI*PSL* E*Y E*DYCKKF* NVSPGGR SS Subject 637 R*QHTHERFSIFHEKGKLRR*RCLRFCDGPLCQLGLVRWKHRYYLRFWQ*M*RIFKSCY*SVSGK**ILTVDSI*PSL*HE*YKE*DYCKKF*FNVSPGGRMSS 948
Range 4: 636 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 92/104(88%) | 0/104(0%) | Minus/Minus |
Query 2 DELRPPGLTLSQNFLQXXXXXXXSRHRDG*MLSTVRIYYLPLTDQ*RDLKILYTYYQNRR*CRCFHRTTPN*HSGPSQNRKHRHRRSLPFS*KILDLSWVCCYL 313 D++RPPGLTL+QNFLQ*SYS YYS HRDG*MLSTVRIYYLPLTDQ* DLKILY Y QNRR* RCFHRT PN*H+GPSQNRKHRHRRSLPFS*KIL+LSWVCCYL Subject 636 DDIRPPGLTLNQNFLQ*SYSLYYSCHRDG*MLSTVRIYYLPLTDQ*HDLKILYIYCQNRR*YRCFHRTNPN*HNGPSQNRKHRHRRSLPFS*KILNLSWVCCYL 947
Range 5: 637 to 957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 96/107(90%) | 0/107(0%) | Minus/Minus |
Query 3 GVFGRIAPTRTHIKSKXXXXXXXXXXFASQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVMPMFPPYHPQLT*WAIXXXXXXXXXKFAFLMKNTRSFMGVLLS 323 G R PTRTHIKSKFLTIILF ILF SQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKV+PMFPPY PQLT*WAITKS*TSSSTKF FLMKNT+SFMGVLLS Subject 637 GELRRHTPTRTHIKSKFLTIILFFILFVSQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVIPMFPPYQPQLT*WAITKS*TSSSTKFTFLMKNTKSFMGVLLS 957
Range 6: 636 to 875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.1 bits(319) | 0.0 | 72/80(90%) | 0/80(0%) | Plus/Plus |
Query 2 EITAHP*KI*YFS*ERQTSSMTMFTIL*WPTMSVGGGTVETSASPSILVISVKNF*IALLIRQR*VINSHS**HLAVSVT 241 EITAHP*KI*YFS*ER TSSMTMFTIL*WP MSVG GTVETS PSIL I+VKNF*I LLIRQR*VINSHS**HLAVSVT Subject 636 EITAHP*KI*YFS*ER*TSSMTMFTIL*WPIMSVGVGTVETSVLPSILAINVKNF*IVLLIRQR*VINSHS**HLAVSVT 875
Grapevine satellite virus isolate AUD46129, complete sequence
Sequence ID: NC_021480.1 Length: 1060 Number of Matches: 7
Range 1: 635 to 958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 102/108(94%) | 0/108(0%) | Plus/Plus |
Query 1 RDNSTPMKDLVFFMRKANFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDANSIKNKIIVRNFDLM*VRVGAIRPNTP 324 RDNSTPMKDLVFFMRK NFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCD NSIKNKIIVRNFDLM*VRVG R N+P Subject 635 RDNSTPMKDLVFFMRKVNFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDTNSIKNKIIVRNFDLM*VRVGVCRLNSP 958
Range 2: 635 to 958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 94/108(87%) | 0/108(0%) | Minus/Minus |
Query 1 GCVWTNCAHPDSH*VKISYNNLILNTIRVTETAKCYQL*EFITYR*RISNAI*KFFTLITKIEGDADVSTVPPPTDIVGHHKIVNIVIDEVCLSHEKY*IFHGCAVIS 324 G V T AHPDSH*+KISYNNLIL TIRVTETAKCYQL*EFITYR*RISN I*KFFT I KIEG+ DVSTVP PTDI+GHHKIVNIVIDEV LSHEKY*IFHGCAVIS Subject 635 G*VKTTYAHPDSH*IKISYNNLILYTIRVTETAKCYQL*EFITYR*RISNTI*KFFTFIAKIEGNTDVSTVPTPTDIMGHHKIVNIVIDEVYLSHEKY*IFHGCAVIS 958
Range 3: 637 to 948 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 93/104(89%) | 0/104(0%) | Plus/Plus |
Query 3 R*QHTHERSSIFHEKGKLRR*RCLRFCDGPLCQLGVVRWKHRHHLRFW**V*RIFKSRY*SVSGK**ILTVDSI*PSL*RE*Y*E*DYCKKF*LNVSPGGRNSS 314 R*QHTHER SIFHEKGKLRR*RCLRFCDGPLCQLG+VRWKHR++LRFW *+*RIFKS Y*SVSGK**ILTVDSI*PSL* E*Y E*DYCKKF* NVSPGGR SS Subject 637 R*QHTHERFSIFHEKGKLRR*RCLRFCDGPLCQLGLVRWKHRYYLRFWQ*M*RIFKSCY*SVSGK**ILTVDSI*PSL*HE*YKE*DYCKKF*FNVSPGGRMSS 948
Range 4: 636 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 92/104(88%) | 0/104(0%) | Minus/Minus |
Query 2 DELRPPGLTLSQNFLQXXXXXXXSRHRDG*MLSTVRIYYLPLTDQ*RDLKILYTYYQNRR*CRCFHRTTPN*HSGPSQNRKHRHRRSLPFS*KILDLSWVCCYL 313 D++RPPGLTL+QNFLQ*SYS YYS HRDG*MLSTVRIYYLPLTDQ* DLKILY Y QNRR* RCFHRT PN*H+GPSQNRKHRHRRSLPFS*KIL+LSWVCCYL Subject 636 DDIRPPGLTLNQNFLQ*SYSLYYSCHRDG*MLSTVRIYYLPLTDQ*HDLKILYIYCQNRR*YRCFHRTNPN*HNGPSQNRKHRHRRSLPFS*KILNLSWVCCYL 947
Range 5: 637 to 957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 96/107(90%) | 0/107(0%) | Minus/Minus |
Query 3 GVFGRIAPTRTHIKSKXXXXXXXXXXFASQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVMPMFPPYHPQLT*WAIXXXXXXXXXKFAFLMKNTRSFMGVLLS 323 G R PTRTHIKSKFLTIILF ILF SQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKV+PMFPPY PQLT*WAITKS*TSSSTKF FLMKNT+SFMGVLLS Subject 637 GELRRHTPTRTHIKSKFLTIILFFILFVSQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVIPMFPPYQPQLT*WAITKS*TSSSTKFTFLMKNTKSFMGVLLS 957
Range 6: 636 to 875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.1 bits(319) | 0.0 | 72/80(90%) | 0/80(0%) | Plus/Plus |
Query 2 EITAHP*KI*YFS*ERQTSSMTMFTIL*WPTMSVGGGTVETSASPSILVISVKNF*IALLIRQR*VINSHS**HLAVSVT 241 EITAHP*KI*YFS*ER TSSMTMFTIL*WP MSVG GTVETS PSIL I+VKNF*I LLIRQR*VINSHS**HLAVSVT Subject 636 EITAHP*KI*YFS*ER*TSSMTMFTIL*WPIMSVGVGTVETSVLPSILAINVKNF*IVLLIRQR*VINSHS**HLAVSVT 875
Cassava satellite virus isolate Casatv_Br, complete genome
Sequence ID: KY607769.1 Length: 1228 Number of Matches: 2
Cassava satellite virus isolate Casatv_Br, complete genome
Sequence ID: NC_033817.1 Length: 1228 Number of Matches: 2