Nucleotide Sequence (621 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
81.3 | 81.3 | 20% | 9.247e-15 | 29% | NC_020235 | |
68.4 | 68.4 | 20% | 6.733e-11 | 27% | NC_030876 | |
67.0 | 67.0 | 18% | 1.746e-10 | 31% | NC_030890 | |
82.2 | 118.5 | 27% | 3.48e-20 | 32% | NC_013015 | |
53.3 | 79.6 | 15% | 1.042e-08 | 31% | NC_026800 |
Alignments
Rosellinia necatrix partitivirus 2 CP gene for capsid protein, complete cds
Range 1: 381 to 758 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 37/126(29%) | 0/126(0%) | Plus/Plus |
Query 3 HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIPKK 380 H+ I + + + F+P+A M+ +I+ M L + + +P Y L +R Y+ I+F +QTLRA+ + L + +L FL + +LPI PL+ F ++ + P QY +V P +P++ Subject 381 HMTIQYASRKKNNTFLPSAFMMMYIIHEMNVLLCEHFYFKREAPNYHPLLLRTYFGILFIIQTLRAQHAANNLFGDQFEFLEKFLDAYPVDTLPIPAPLIHIFKSLCSSRPEIPQYGYVTPFVPEE 758
Sophora japonica powdery mildew-associated partitivirus isolate HBJZ1510 putative coat protein gene, complete cds
Range 1: 438 to 809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 33/124(27%) | 0/124(0%) | Plus/Plus |
Query 3 HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIP 374 H P S FVP F +LF M E+L + ++ + P YF+ + Y ++IF +Q LRA+E +G + + E + L+ ++ + + P++ + ++ +V P+D Y ++ P P Subject 438 HFGFPPVTHPATSTFVPWCGNFFSVLFFMGESLCNSTLVQESIPDYFTPVLYWYGSMIFILQILRAREAAGAITRDERTVLQMIIKTYPLEQWTVLSPMIGFLQSLGSVKPTDPMYSWICPAFP 809
Arabidopsis halleri partitivirus 1 genomic RNA, segment 2, complete sequence
Range 1: 403 to 738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 35/112(31%) | 0/112(0%) | Plus/Plus |
Query 39 SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIP 374 S + P+ M+ +IL ++ TL N + +P Y +R+Y+ ++F+VQ LRA + +L+ FL SL I GPL+ F + + P Y VYP IP Subject 403 SHYYPSCHMMDYILHSINSTLCDNYYFKRETPNYHPYILRLYFGVLFWVQCLRAGNDVQVINDLHYDFLQRFLDCNPLESLAIPGPLLGLFKTLCSSQPEFPHYGKVYPRIP 738
Sclerotinia sclerotiorum partitivirus S segment 2, complete genome
Range 1: 450 to 776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 36/109(33%) | 0/109(0%) | Plus/Plus |
Query 39 SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYP 365 S + P+ ++ +L M + + N LR P Y +YY IIF +Q LRA + + L +A+ +LR F F LP+AGPLV +F N+ P +++ +V P Subject 450 STYTPSCWSMYAVLDAMHDLVGDNASLRRFCPYYHVALSNIYYGIIFIIQVLRANQVANNLSQADFQFLRFFESNFALEELPVAGPLVLFFQNLAAFKPDGNRFNWVVP 776
Range 2: 804 to 974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 18/57(32%) | 0/57(0%) | Plus/Plus |
Query 411 GQRLPNVTSAHYLIPSVPIIASLLKDFCTTPTIGNSKFDDDGNYIPFQLTVGGTFAG 581 G P V + +P +P + SLL F + + D G + PF GGT AG Subject 804 GANSPRVNAQSTALPQLPQMISLLNLFGASNAALLTAMDTAGQWEPFTFAAGGTIAG 974
Range 1: 544 to 759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 22/72(31%) | 0/72(0%) | Plus/Plus |
Query 159 VYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIP 374 + +A++ VQ LRA++ +G L ++ +L++F+ + ++ I GPL+P+F +I + P + V P IP Subject 544 IVFAVLAIVQVLRAQQLAGLLTPSQNRFLKSFIGKHPLETIIIPGPLLPFFRSISSANPGFGNFGDVTPVIP 759