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Queries

Nucleotide Sequence (463 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
463

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
316.8 1328.9 37% 1.113e-84 75% DQ787959.1
318.1 1290.8 39% 4.249e-85 65% KF013822.1
316.8 1365.0 39% 1.102e-84 67% KF013776.1
316.8 1365.0 39% 1.102e-84 67% KF013798.1
316.8 1354.9 38% 1.102e-84 67% KF013852.1

Alignments

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 7

Range 1: 6418 to 6843 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.8 bits(685) 0.0 136/142(96%) 0/142(0%) Plus/Plus
Query       11  GLMGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  436
                GLMGQ+ARRGEIRAVIEELVLARAELSEDTS+ GYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNAS+KTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLA+KMTRS
Subject   6418  GLMGQFARRGEIRAVIEELVLARAELSEDTSTGGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASKKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLATKMTRS  6843

Range 2: 6418 to 6840 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.3 bits(540) 0.0 110/141(78%) 0/141(0%) Minus/Minus
Query       11  PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTHES  433
                PSHL+C LR+R+ LSH+NQEIVSVLSE FAHLPQ  PLDRSLAY  T+ SHA +HASHVYFTPRV  SL T IRSYYIYLSIMSRL AS DQGD+PEESIQVH SVVA  A VLTQLR REHE  YH SDLPPPC LTHES
Subject   6418  PSHLSC*LRIRTQLSHDNQEIVSVLSERFAHLPQSRPLDRSLAYSRTESSHARYHASHVYFTPRV*TSLLTRIRSYYIYLSIMSRLLASPDQGDVPEESIQVHCSVVAPCARVLTQLRSREHEFFYHCSDLPPPCELTHES  6840

Range 3: 6531 to 6842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.8 bits(482) 0.0 99/104(95%) 0/104(0%) Minus/Minus
Query      124  DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI  435
                DLVIL+ANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VLMR TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI
Subject   6531  DLVILVANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLMRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI  6842

Range 4: 6504 to 6842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.8 bits(432) 0.0 85/113(75%) 0/113(0%) Plus/Plus
Query       97  HQQ*RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V  435
                H+   LRPN VPEYSLRV+RLGR+*Q+GDSLWRGRYSRT*C+*EDW  P G*NKRG*HG  HEN+ C  KRGTCQGG+ EADVRT+RSKRLRFPGC+G*V  V+AV   DD*V
Subject   6504  HEHRGLRPNNVPEYSLRVHRLGRD*QEGDSLWRGRYSRT*CE*EDWSRP*G*NKRG*HGSAHENSQCGCKRGTCQGGDSEADVRTVRSKRLRFPGCHG*VGYVYAVSN*DD*V  6842

Range 5: 6417 to 6464 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 15/16(94%) 0/16(0%) Plus/Plus
Query       10  RTHGSVRKEGGDPSGD  57
                RTHGSVRKEGGDPS D
Subject   6417  RTHGSVRKEGGDPSSD  6464

Range 6: 6497 to 6841 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 91/115(79%) 0/115(0%) Minus/Minus
Query       90  T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSSXXXXXXXXXXXHNESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH  434
                T*SS L TA T+ TQP*QPGNRKRFER VRTSAS  PP*QVPRL  H* FSC  PC*PRLFYP G  QSSY H*VLLYLPLHNESP C* RPRR TRREYSGT FGRS  C CPH
Subject   6497  T*SS*LLTAYTYPTQP*QPGNRKRFERTVRTSASESPP*QVPRLQPH*EFSCALPC*PRLFYP*GLDQSSYSH*VLLYLPLHNESPSC*SRPRRCTRREYSGTLFGRSPLCSCPH  6841

Range 7: 6503 to 6757 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 66/85(78%) 0/85(0%) Plus/Plus
Query       96  TPAVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN  350
                T A  ATTE CT*ILSSG SPWS LA+RRLIMER*I**DLM+V RL  T GVK*TWLAW* A*E  V+ *ARDLSRG+ *GRCAN
Subject   6503  TRAQGATTEQCT*ILSSGTSPWSGLARRRLIMER*I**DLMRVRRLV*TLGVK*TWLAW*RA*ELSVRL*ARDLSRGRL*GRCAN  6757

Grapevine virus A clone LVCH92 07_c05 coat protein (CP) gene, complete cds

Sequence ID: KF013822.1 Length: 597 Number of Matches: 9

Range 1: 1 to 420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
318.1 bits(688) 0.0 137/140(98%) 0/140(0%) Plus/Plus
Query       17  MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  436
                MGQ+ARRGEIRAVIEELVLARAELSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS
Subject      1  MGQFARRGEIRAVIEELVLARAELSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  420

Range 2: 1 to 417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.3 bits(518) 0.0 102/139(73%) 0/139(0%) Minus/Minus
Query       17  PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH  433
                PSHL CQL +R+ LSH+NQ+IVSVLSEWFAHL QG P DRSLAY   + SHA +HASHVYFTPRV ASLPT IRSYYIYLSI+ RL A  DQGD+P+ESI VHSSVV+  A +LTQLR REHE LY  SDLPPPC LTH
Subject      1  PSHLTCQLCIRTQLSHDNQKIVSVLSEWFAHLSQGRPFDRSLAYGSAESSHACYHASHVYFTPRV*ASLPTSIRSYYIYLSIVCRLLARPDQGDVPKESI*VHSSVVSLGARILTQLRSREHEFLYDCSDLPPPCELTH  417

Range 3: 108 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.8 bits(480) 0.0 99/104(95%) 0/104(0%) Minus/Minus
Query      124  DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI  435
                DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VLMR TMLATFILPLGSRPVFLLALGPTISTSP* VAFLLVPTKA+YPKRVFRYI
Subject    108  DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLMRATMLATFILPLGSRPVFLLALGPTISTSP*CVAFLLVPTKAMYPKRVFRYI  419

Range 4: 96 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.6 bits(390) 0.0 79/108(73%) 0/108(0%) Plus/Plus
Query      112  LRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V  435
                +RPNYVP+YSL V+RLGR+ Q+GD+LWRGRYSRT*C *EDWP P G*NKRG*HG  HEN+    KRGT Q G+PE DVRTIRSKRLRF GC+G*V  V+ VGK DD*V
Subject     96  IRPNYVPKYSLWVHRLGRDEQEGDTLWRGRYSRT*C**EDWPRP*G*NKRG*HGSTHENSQRCRKRGTGQRGDPETDVRTIRSKRLRFSGCHG*VGYVYTVGK*DD*V  419

Range 5: 3 to 35 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 10/11(91%) 0/11(0%) Plus/Plus
Query       19  GSVRKEGGDPS  51
                GS+RKEGGDPS
Subject      3  GSIRKEGGDPS  35

Range 6: 209 to 418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 52/70(74%) 0/70(0%) Minus/Minus
Query      225  T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS  434
                T*SS LPT  T+ TQP*QP NRKRFERMVRTS SG P * VPRL   * FSC  PC*PRLFYP G GQSS
Subject    209  T*SSYLPTVYTYPTQP*QPENRKRFERMVRTSVSGSPL*PVPRLRQR*EFSCVLPC*PRLFYP*GLGQSS  418

Range 7: 74 to 166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/31(65%) 0/31(0%) Minus/Minus
Query       90  SPFC*FRPRRYTRREYSGT*FGRSLHCWCPH  182
                SP C  RPRR T+REY GT*FGR   C  PH
Subject     74  SPSCSSRPRRCTQREYLGT*FGRIPRCSYPH  166

Range 8: 86 to 337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 61/84(73%) 0/84(0%) Plus/Plus
Query      102  AVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCANH  353
                A + TTELCT*ILS G SPWS  A+RR  MER*I**DLM VGRLA T GVK*TWLAW* A*E     *ARD S+G+P* RCANH
Subject     86  APRDTTELCT*ILSLGTSPWSGRARRRHTMER*I**DLMLVGRLA*TLGVK*TWLAW*HA*ELSALP*ARDRSKGRP*DRCANH  337

Range 9: 386 to 421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
21.7 bits(41) 0.0 8/12(67%) 0/12(0%) Plus/Plus
Query      402  RTRSWQAR*LGQ  437
                R  SWQ R*LG+
Subject    386  RIHSWQVR*LGR  421

Grapevine virus A clone CSOT2_2c coat protein (CP) gene, complete cds

Sequence ID: KF013776.1 Length: 597 Number of Matches: 9

Range 1: 1 to 420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.8 bits(685) 0.0 136/140(97%) 0/140(0%) Plus/Plus
Query       17  MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  436
                MGQ+ARRGEIRAVIEELVLARA+LSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS
Subject      1  MGQFARRGEIRAVIEELVLARADLSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  420

Range 2: 1 to 417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
268.7 bits(580) 0.0 109/139(78%) 0/139(0%) Minus/Minus
Query       17  PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH  433
                PSHL CQL +R+ LSH+NQEIVSVLSE FAHLPQ CP DRSLAY CTK  H  +HASHVYFTPR+QASLPT IR YYIYL IMSRL A  DQGD+PEESIQVH SVVAF A +LTQ+RPREHE LYHRSDLPPPC LTH
Subject      1  PSHLTCQLCIRTQLSHDNQEIVSVLSERFAHLPQSCPFDRSLAYGCTKSPHTRYHASHVYFTPRIQASLPTSIRPYYIYLPIMSRLLACPDQGDVPEESIQVHCSVVAFCARILTQVRPREHEFLYHRSDLPPPCELTH  417

Range 3: 108 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 99/104(95%) 0/104(0%) Minus/Minus
Query      124  DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI  435
                DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VL+R TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI
Subject    108  DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLIRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI  419

Range 4: 93 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 84/109(77%) 0/109(0%) Plus/Plus
Query      109  RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V  435
                RLRPN VPEYSLRV+RLGR+ Q+GDSLW GRYSR *C *EDWPG  G*NKRG*HG  +E++*CS KRGTCQ GN EADVRT+RSKRLRFPGC+G*V  V+ VGK DD*V
Subject     93  RLRPNNVPEYSLRVHRLGRDKQEGDSLWGGRYSRA*C**EDWPGS*G*NKRG*HGSAYEDS*CSRKRGTCQRGNSEADVRTVRSKRLRFPGCHG*VGYVYTVGK*DD*V  419

Range 5: 3 to 41 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 12/13(92%) 0/13(0%) Plus/Plus
Query       19  GSVRKEGGDPSGD  57
                GS+RKEGGDPSGD
Subject      3  GSIRKEGGDPSGD  41

Range 6: 209 to 418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 54/70(77%) 0/70(0%) Minus/Minus
Query      225  T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS  434
                T*SS LPT  T+ TQP*QPGNRKRFER VRTSAS LP *QVPRL LH*  S   PC*PRLFYP  PGQSS
Subject    209  T*SSYLPTVYTYPTQP*QPGNRKRFERTVRTSASELPL*QVPRLRLH*ESSYALPC*PRLFYP*DPGQSS  418

Range 7: 74 to 172 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 25/33(76%) 0/33(0%) Minus/Minus
Query       90  NESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH  188
                NESP C  RPRR TRREYSGT FGRSL C  PH
Subject     74  NESPSCLSRPRRCTRREYSGTLFGRSLLCSYPH  172

Range 8: 86 to 334 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 65/83(78%) 0/83(0%) Plus/Plus
Query      102  AVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN  350
                A KATTE CT*ILSSG SPWS  A+RRLIM R*I** LM VGRLAW  GVK*TWLAW*  *  LVQ *ARDLS+GQ *GRCAN
Subject     86  AQKATTEQCT*ILSSGTSPWSGQARRRLIMGR*I**GLMLVGRLAWILGVK*TWLAW*RV*GLLVQP*ARDLSKGQL*GRCAN  334

Range 9: 386 to 421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
21.7 bits(41) 0.0 8/12(67%) 0/12(0%) Plus/Plus
Query      402  RTRSWQAR*LGQ  437
                R  SWQ R*LG+
Subject    386  RIHSWQVR*LGR  421

Grapevine virus A clone SLWZF1 11c coat protein (CP) gene, complete cds

Sequence ID: KF013798.1 Length: 597 Number of Matches: 9

Range 1: 1 to 420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.8 bits(685) 0.0 136/140(97%) 0/140(0%) Plus/Plus
Query       17  MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  436
                MGQ+ARRGEIRAVIEELVLARA+LSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS
Subject      1  MGQFARRGEIRAVIEELVLARADLSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  420

Range 2: 1 to 417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
268.7 bits(580) 0.0 109/139(78%) 0/139(0%) Minus/Minus
Query       17  PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH  433
                PSHL CQL +R+ LSH+NQEIVSVLSE FAHLPQ CP DRSLAY CTK  H  +HASHVYFTPR+QASLPT IR YYIYL IMSRL A  DQGD+PEESIQVH SVVAF A +LTQ+RPREHE LYHRSDLPPPC LTH
Subject      1  PSHLTCQLCIRTQLSHDNQEIVSVLSERFAHLPQSCPFDRSLAYGCTKSPHTRYHASHVYFTPRIQASLPTSIRPYYIYLPIMSRLLACPDQGDVPEESIQVHCSVVAFCARILTQVRPREHEFLYHRSDLPPPCELTH  417

Range 3: 108 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 99/104(95%) 0/104(0%) Minus/Minus
Query      124  DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI  435
                DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VL+R TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI
Subject    108  DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLIRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI  419

Range 4: 93 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 84/109(77%) 0/109(0%) Plus/Plus
Query      109  RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V  435
                RLRPN VPEYSLRV+RLGR+ Q+GDSLW GRYSR *C *EDWPG  G*NKRG*HG  +E++*CS KRGTCQ GN EADVRT+RSKRLRFPGC+G*V  V+ VGK DD*V
Subject     93  RLRPNNVPEYSLRVHRLGRDKQEGDSLWGGRYSRA*C**EDWPGS*G*NKRG*HGSAYEDS*CSRKRGTCQRGNSEADVRTVRSKRLRFPGCHG*VGYVYTVGK*DD*V  419

Range 5: 3 to 41 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 12/13(92%) 0/13(0%) Plus/Plus
Query       19  GSVRKEGGDPSGD  57
                GS+RKEGGDPSGD
Subject      3  GSIRKEGGDPSGD  41

Range 6: 209 to 418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 54/70(77%) 0/70(0%) Minus/Minus
Query      225  T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS  434
                T*SS LPT  T+ TQP*QPGNRKRFER VRTSAS LP *QVPRL LH*  S   PC*PRLFYP  PGQSS
Subject    209  T*SSYLPTVYTYPTQP*QPGNRKRFERTVRTSASELPL*QVPRLRLH*ESSYALPC*PRLFYP*DPGQSS  418

Range 7: 74 to 172 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 25/33(76%) 0/33(0%) Minus/Minus
Query       90  NESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH  188
                NESP C  RPRR TRREYSGT FGRSL C  PH
Subject     74  NESPSCLSRPRRCTRREYSGTLFGRSLLCSYPH  172

Range 8: 86 to 334 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 65/83(78%) 0/83(0%) Plus/Plus
Query      102  AVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN  350
                A KATTE CT*ILSSG SPWS  A+RRLIM R*I** LM VGRLAW  GVK*TWLAW*  *  LVQ *ARDLS+GQ *GRCAN
Subject     86  AQKATTEQCT*ILSSGTSPWSGQARRRLIMGR*I**GLMLVGRLAWILGVK*TWLAW*RV*GLLVQP*ARDLSKGQL*GRCAN  334

Range 9: 386 to 421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
21.7 bits(41) 0.0 8/12(67%) 0/12(0%) Plus/Plus
Query      402  RTRSWQAR*LGQ  437
                R  SWQ R*LG+
Subject    386  RIHSWQVR*LGR  421

Grapevine virus A clone PLCF95 413_c05 coat protein (CP) gene, complete cds

Sequence ID: KF013852.1 Length: 597 Number of Matches: 9

Range 1: 1 to 420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.8 bits(685) 0.0 136/140(97%) 0/140(0%) Plus/Plus
Query       17  MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  436
                MGQ+ARRGEIRAVIEELVLARA+LSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS
Subject      1  MGQFARRGEIRAVIEELVLARADLSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS  420

Range 2: 1 to 417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 108/139(78%) 0/139(0%) Minus/Minus
Query       17  PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH  433
                PSHL CQL +R+ LSH+NQ+IVSVLSE FAHLPQ CP DRSLAY CTK  H  +HASHVYFTPR+Q SLPT IR YYIYL IMSRL A  DQGD+PEESIQVH SVVAF A VLTQ+RPREHE LYHRSDLPPPC LTH
Subject      1  PSHLTCQLCIRTQLSHDNQKIVSVLSERFAHLPQSCPFDRSLAYGCTKSPHTRYHASHVYFTPRIQTSLPTSIRPYYIYLPIMSRLLACPDQGDVPEESIQVHCSVVAFCARVLTQVRPREHEFLYHRSDLPPPCELTH  417

Range 3: 108 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 99/104(95%) 0/104(0%) Minus/Minus
Query      124  DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI  435
                DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VL+R TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI
Subject    108  DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLIRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI  419

Range 4: 81 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.7 bits(412) 0.0 83/113(73%) 0/113(0%) Plus/Plus
Query       97  HQQ*RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V  435
                H+  RLRPN VPEYSLRV+RLGR+ Q+GDSLW GRYSR *C *EDW G  G*NKRG*HG  +E++*CS KRGTCQ GN EADVRT+RSKRLRF GC+G*V  V+ VGK DD*V
Subject     81  HEHRRLRPNNVPEYSLRVHRLGRDKQEGDSLWGGRYSRA*C**EDWSGS*G*NKRG*HGSAYEDS*CSRKRGTCQRGNSEADVRTVRSKRLRFSGCHG*VGYVYTVGK*DD*V  419

Range 5: 3 to 41 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 12/13(92%) 0/13(0%) Plus/Plus
Query       19  GSVRKEGGDPSGD  57
                GS+RKEGGDPSGD
Subject      3  GSIRKEGGDPSGD  41

Range 6: 209 to 418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 52/70(74%) 0/70(0%) Minus/Minus
Query      225  T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS  434
                T*SS LPT  T+ TQP*QP NRKRFER VRTSAS LP *QVPRL LH*  S   PC*PRLFYP  P QSS
Subject    209  T*SSYLPTVYTYPTQP*QPENRKRFERTVRTSASELPL*QVPRLRLH*ESSYALPC*PRLFYP*DPDQSS  418

Range 7: 74 to 172 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 26/33(79%) 0/33(0%) Minus/Minus
Query       90  NESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH  188
                NESP C  RPRR TRREYSGT FGRSL C CPH
Subject     74  NESPSCLSRPRRCTRREYSGTLFGRSLLCSCPH  172

Range 8: 80 to 334 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 65/85(76%) 0/85(0%) Plus/Plus
Query       96  TPAVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN  350
                T A KATTE CT*ILSSG SPWS  A+RRLIM R*I** LM VGRL W  GVK*TWLAW*  *  LVQ *ARDLS+GQ *GRCAN
Subject     80  TRAQKATTEQCT*ILSSGTSPWSGQARRRLIMGR*I**GLMLVGRLVWILGVK*TWLAW*RV*GLLVQP*ARDLSKGQL*GRCAN  334

Range 9: 386 to 421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
21.7 bits(41) 0.0 8/12(67%) 0/12(0%) Plus/Plus
Query      402  RTRSWQAR*LGQ  437
                R  SWQ R*LG+
Subject    386  RIHSWQVR*LGR  421

Nucleotide Sequence (945 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
95
190
285
380
475
570
665
760
855
945

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
490.4 2597.3 27% 1.526e-136 52% JX559641.1
442.3 2752.3 27% 8.401e-145 55% DQ855088.1
452.9 2723.0 27% 2.512e-142 49% DQ787959.1
320.0 1431.6 19% 6.803e-90 37% DQ855082.2
292.0 1129.3 26% 2.183e-133 34% KC962564.1

Alignments

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 10

Range 1: 5196 to 6134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
490.4 bits(1064) 0.0 228/313(73%) 0/313(0%) Minus/Plus
Query        2  ELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHGYRAXXXXXXGVPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV  940
                EL +FLRLGLDRSTLG+GSIESLP+D+CI+LLEGLR+LG++SIDNVLHVLG GEPDRFEI KVFR+QGVAISEA QLGLTKS SFSPRPVSLILDDLLDRIAR ASFLPVDLGAV GELVINFERSRLSVDLY+NNKKVCSRI YS GD  YV RRFSGFKGIITR+S*DKGL C+ E+QG   S+Q  A RGC+ DR++* G+S+E++EVRDTQG G  GW GRL  *Y G+RA * G  GV  IPCRLHR G DAPW +S   GG+G QGY+ +G +LTDIKE HG++QTYK +   PW+ HKH G  Q V
Subject   5196  ELADFLRLGLDRSTLGSGSIESLPYDKCIKLLEGLRALGFSSIDNVLHVLGKGEPDRFEIYKVFRSQGVAISEALQLGLTKSFSFSPRPVSLILDDLLDRIARGASFLPVDLGAVNGELVINFERSRLSVDLYVNNKKVCSRISYSPGDPYYVQRRFSGFKGIITRAS*DKGLQCQTEHQGSGDSKQGPAPRGCLRDRID*EGVSEENKEVRDTQGIGCKGWSGRLRS*YLGFRA**CGRRGVSTIPCRLHRGGVDAPWQKSGRQGGSGGQGYEAKGAQLTDIKELHGFIQTYKRLRRFPWLFHKHHGPAQRV  6134

Range 2: 5473 to 6135 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
415.7 bits(901) 0.0 184/221(83%) 0/221(0%) Minus/Plus
Query        1  YWTTC*IV*QDAHHFCRLIWVL*XXXXXXXXSVLG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY  663
                YWTTC*I *Q+ HHFCRLIWVL*+GS* SISSVLG*V*TC  IIRKCA E* T +  L+MS   SQ SKGSS ALHEIKVFNVKRNTKDLE LNKALHRGD YETEL ERVFPRRT+KCVIH+ELVV+DGRVDCDLDI+D+GLD+VDEEE+PLYHVGCIVVALMPHGKNL GKVV+E++DTRLKGPSSRISRSFMD+SKPISACADFPGYFIST D LN Y
Subject   5473  YWTTC*IG*QEVHHFCRLIWVL*TGS*LSISSVLG*V*TCMSIIRKCAQE*VTHRAILTMSSEGSQGSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDILDSGLDDVDEEEYPLYHVGCIVVALMPHGKNLGGKVVVEVKDTRLKGPSSRISRSFMDLSKPISACADFPGYFISTTDLLNGY  6135

Range 3: 5197 to 5415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 43/73(59%) 0/73(0%) Minus/Plus
Query      721  N*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRVWQLAR  939
                N L+  V  WIG+ *V GL*S   +I VL C*R CV  V L  ITCSTCWE VSR A + +RCSG RVWQ  R
Subject   5197  NWLTFCVWAWIGVL*VAGL*SHYLMISVLSC*RVCVRWVFLR*ITCSTCWERVSRIALKSTRCSGPRVWQSVR  5415

Range 4: 5192 to 5980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
416.7 bits(903) 0.0 194/263(74%) 0/263(0%) Plus/Minus
Query      156  DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV  944
                D  HGAS P RCNRHGI+ TP  P H AL P YQ  NRP HP+ P PCVSRTS  S E P  S  S  HPR A  C E  +PW S  H*RPLSHE RVMIPL PENLRWT * SP E  ILEHTFLLL YKSTLNLERSKLITSSP TAPKSTGRNDA LAIRSSKSSSIRLTGRGLKL+LFVKPS  ASLIATP  RNTL ISKRSGSP P+TWSTLSIE  P  R PS+NLIHLS G DSIDPLP V LSKPRRR S NS+
Subject   5192  DFCHGASTPPRCNRHGIVDTPLRPHHQALNPRYQDRNRPDHPLQPIPCVSRTSLFSSETPSQSILSRKHPRGAGPCLESPDPWCSV*H*RPLSHEARVMIPLNPENLRWT**GSPGE*LILEHTFLLLTYKSTLNLERSKLITSSPFTAPKSTGRNDAPLAIRSSKSSSIRLTGRGLKLKLFVKPSCRASLIATPWDRNTL*ISKRSGSPFPNTWSTLSIEEKPNARKPSNNLIHLS*GNDSIDPLPKVLLSKPRRRKSANSI  5980

Range 5: 6065 to 6133 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/23(52%) 0/23(0%) Plus/Minus
Query        3  TD*VDPGCL*STQGSQHMHL*VW  71
                T *  P CL*+ QG++   L*VW
Subject   6065  TR*AGPWCL*NNQGNRRKRL*VW  6133

Range 6: 5196 to 5828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
314.0 bits(679) 0.0 149/211(71%) 0/211(0%) Plus/Minus
Query      308  HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN*F  940
                HFLVLLGNT S NSVS  SPRCRALFR S+SLVF  TLKTFIS* A DDPFE *E  +DI+ +   V YS AHFLII++QVYT*PRTLEID *LP +STQINRQK*C SCY I*QVVQYQTNWTRAEAK FC A*L SL +CHTL PEHL + +A+RLT SQHVEHVI R  T RTQ+L*Q NT I    LYRP T*  PIQ  T++++ F
Subject   5196  HFLVLLGNTLSINSVS*TSPRCRALFRVSRSLVFRLTLKTFIS*SACDDPFEP*EPSLDIVRIAR*VTYS*AHFLIIDIQVYT*PRTLEIDN*LPVYSTQINRQK*CTSCYPI*QVVQYQTNWTRAEAKTFCQA*L*SLTDCHTLGPEHLVDFKAIRLTLSQHVEHVIYRRKTQRTQTL*QLNTLIIR**LYRPAT*STPIQAQTQKVSQF  5828

Range 7: 5925 to 6134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 58/70(83%) 0/70(0%) Plus/Minus
Query        2  YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIRELGXXXXXXXXXXXXXXXRFLPWGISATTMQPTWYNG  211
                Y LS S VLMK PGKSA ALIGLD SMKLLDIRELGP SLVSL+S TTLP RFLPWGI+ATTMQPTWY+G
Subject   5925  YPLSRSVVLMK*PGKSAQALIGLDKSMKLLDIRELGPFSLVSLTSTTTLPPRFLPWGINATTMQPTWYSG  6134

Range 8: 5455 to 6135 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
322.7 bits(698) 0.0 149/227(66%) 0/227(0%) Plus/Minus
Query        1  VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLMKSA**SL*NLRISDGHTERHLQSTLF*STLSYY*CTSLHLT*NARN*LLAPRSQHPNQPAEMMRILLYDLASRPVSD*LDE  681
                VP+E +RGAYE+ RE+    YRFG IHE P*YP*A  L   I +LHYHL  +I  MGHQ H DATDMV*W LL +H+I+P I DIK+ IDPTILY+Q  VYHAL   P K+P  Q  L+ IPA+Q  V SL ILG+P  I+DLYLMK  **SL* LR   GH++    S LF STLSYY* TSLHLT*NARN* LAPR QHPNQPAEMM +LL DLASRPVSD*LDE
Subject   5455  VPVEQVRGAYEITREIGASAYRFG*IHEAP*YP*AGPL*PRILDLHYHLAAQIFAMGHQRHHDATDMV*WILLFVHIIKP*IQDIKIAIDPTILYNQFPVYHALPCSPRKHPLNQFCLVNIPAVQGLV*SLQILGVPFDIEDLYLMKRV**SL*TLRTFAGHSKDRPVSNLFLSTLSYY*HTSLHLT*NARN**LAPRLQHPNQPAEMMHLLLSDLASRPVSD*LDE  6135

Range 9: 5197 to 5418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 41/74(55%) 0/74(0%) Plus/Minus
Query      718  KPR*LPHPVPGTP*ESRSGPAHLLPARGARYQ*KHNLKNAIPLAT*YTYQRAETL*TRYLM*TYPNLDGGTQLI  939
                +P *LPHP  GTP   +S PAH  P RGARY  K N  +A PL T*YTY +  TL*TRYL  +YP+ D  +Q I
Subject   5197  EPH*LPHPGTGTPCRFQSDPAHPFPTRGARYLSKKNPTHANPLTT*YTYHKVMTL*TRYLKYSYPSPDAESQPI  5418

Range 10: 5378 to 6133 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.0 bits(716) 0.0 167/252(66%) 0/252(0%) Minus/Plus
Query        3  QGVPGTGCGN*RGLPARLNKKP*LQPXXXXSDTGRLARSYSKMRIISAG*FGCCDRGASNQFRAF*VKCRLVH***ESVL*NKVLCR*RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGMRMRPS*MNGYFQGGPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW*WSSGIQDSRDRAHGYQGVSWICPNL*VHVLTSLGTS*APRINSIG  758
                QGVP  GCGN  G  ARL+KK *LQPSSS*SDTGRLARS SK  IISAG*FGCC RGAS QFRAF*VKCRLV  **ESVL NK+L     +CP+++LR QRDHH  FMR*RS M  G PRI RL*T+ C AGM  R +*+ G F+G   SA*YT +W  RMVGSI  LISWIQG M W +RS HYTMSVAS W *CPM +I   RW*W S I+  R  AHGYQG SWI PNL*     SL  S*APR  S G
Subject   5378  QGVPVPGCGNQ*GSTARLDKKF*LQPSSS*SDTGRLARSDSKRCIISAG*FGCCKRGASYQFRAF*VKCRLVCQ**ESVLKNKLLTGRSLLCPAKVLRVQRDHHTRFMR*RSSMSNGTPRIWRL*TRPCTAGMFTRQN*LRGCFRGEQGSA*YTGNWL*RMVGSIAILISWIQGLMMWTKRSIHYTMSVASWWR*CPMAKIWAARW*WRSRIRG*RGPAHGYQGASWIYPNL*ALAPISLVIS*APRTCSTG  6133

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 11

Range 1: 5207 to 5905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
409.3 bits(887) 0.0 190/233(82%) 0/233(0%) Minus/Plus
Query      245  TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHG  943
                TEL++FLR GLDRSTLG+GSIESLP DRCIRLLEGLR+LGY+SIDNVLHVLGGGEPDRF+IL+VFRAQGVA+SEAY+LGLTKSLSFSPRPVSLILDDLLDRIAR ASFLPVDLGAV GELV+NFERSRLSVDLY+NNKKVCSRIKYSAGD +YV +RFSGFKGI+TRSS*DKGL  + E+QGF  SEQ  A RGC+ DRV+  G+ KED+EV DTQ A G GW GRL*P*YHG
Subject   5207  TELLDFLRFGLDRSTLGSGSIESLPLDRCIRLLEGLRNLGYSSIDNVLHVLGGGEPDRFQILRVFRAQGVAVSEAYELGLTKSLSFSPRPVSLILDDLLDRIARGASFLPVDLGAVNGELVVNFERSRLSVDLYVNNKKVCSRIKYSAGDPKYVQQRFSGFKGIVTRSS*DKGLQRKAEHQGFGDSEQGPAPRGCLRDRVDRKGVPKEDKEVCDTQRASGKGWQGRL*P*YHG  5905

Range 2: 5936 to 6148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 49/71(69%) 0/71(0%) Minus/Plus
Query        2  VPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV  214
                V  IPCRL+R G DAPW*E +W  G+G QG+KT+  +LTDIKE HGYVQTYKCMC* PW+LHKH G TQ V
Subject   5936  VSTIPCRLYRGGADAPW*EPKWQSGSGGQGHKTERAQLTDIKELHGYVQTYKCMC*FPWLLHKHRGLTQWV  6148

Range 3: 5206 to 6000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
442.3 bits(959) 0.0 200/265(75%) 0/265(0%) Plus/Minus
Query      150  H*DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV  944
                H  SYHGAS P R +RHGI+ T PHP     +P*YQGHNRP HP+P A CVS TS SSL  P  STRS  HPR A  CSE  NPW S+  *RPLSHEERV IPL PENL WTY  SPAEYFILEHTFLLL Y+STLNLERSKL TSSP TAPKSTGRNDA LA+RSSKSSSIRLTGRGLKLRLFVKPS  ASL ATP ARNTLRI  RSGSPPP+TWSTLSI+ *PK R PS+NLIHLSKG DSIDPLPNV LS+P+RR S+NSV
Subject   5206  HLGSYHGASAPPRYSRHGIVDTHPHPHSQVHHP*YQGHNRPCHPLPLALCVSHTSLSSLGTPFLSTRSRKHPRGAGPCSESPNPWCSALR*RPLSHEERVTIPLNPENLCWTYLGSPAEYFILEHTFLLLTYRSTLNLERSKLTTSSPFTAPKSTGRNDAPLAMRSSKSSSIRLTGRGLKLRLFVKPSSYASLTATPWARNTLRI*NRSGSPPPNTWSTLSIDE*PKLRKPSNNLIHLSKGNDSIDPLPNVLLSRPKRRKSSNSV  6000

Range 4: 6073 to 6147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 20/25(80%) 0/25(0%) Plus/Minus
Query        3  TD*VDPGCL*STQGSQHMHL*VWTY  77
                T *V P CL*S QG+QHMHL*VWTY
Subject   6073  TH*VSPRCL*SNQGNQHMHL*VWTY  6147

Range 5: 5487 to 6149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
402.9 bits(873) 0.0 182/221(82%) 0/221(0%) Minus/Plus
Query        1  YWTTC*IV*QDAHHFCRLIWVL*XXXXXXXXSVLG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY  663
                YW TC*I *Q+ HHF RL WVL*+GS* SISSVLG*V* C LIIR+CA E*ST Q   SMS   SQ SKGSS ALHEIKVFNVKRNTKDLE LNKALHRGD YETEL ERVFPRRT+KCVIH+ELVV+DGRVDCDLDIMD GL+ VDE+E+PLYHVGCIVVALMPHGKNLSGKVV+E++DTRLK PSSRISRSFMDMSKPISACADFPGYFIST D LN Y
Subject   5487  YWMTC*IA*QEVHHFYRLTWVL*TGS*LSISSVLG*V*ICMLIIRRCAQE*STQQGIPSMSNRGSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDIMDDGLENVDEDEYPLYHVGCIVVALMPHGKNLSGKVVVEVKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGY  6149

Range 6: 5208 to 5429 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 44/74(59%) 0/74(0%) Minus/Plus
Query      721  PN*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRVWQLAR  942
                PN L SS  V IG+H*V GL*S  P IGVLGC*+ CV+*    LITCSTC E V++   R   CSG R WQL R
Subject   5208  PNCLISSASVLIGVH*VAGL*SHYP*IGVLGC*KVCVI*ATRRLITCSTC*EGVNQIGFRSLECSGPRGWQLVR  5429

Range 7: 5469 to 6149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
368.6 bits(798) 0.0 161/227(71%) 0/227(0%) Plus/Minus
Query        1  VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLMKSA**SL*NLRISDGHTERHLQSTLF*STLSYY*CTSLHLT*NARN*LLAPRSQHPNQPAEMMRILLYDLASRPVSD*LDE  681
                VPIE +RGAYEV RE+STCTYRFGHIHE P*YP*A   +SC+ +LHYH  T +LTMGHQ H D  DMV*W L+LIH+++  IHDIKVTIDP ILYH L VYH L  PPW++PF QLGL+ IPA+Q  VQSL ILG+PL+++DLYLMKS * SL* LR S GHT   L STLF ST SYY* T LHLT*NARN* LAPRSQHP+QP EMM +LL DLAS PVSD*LDE
Subject   5469  VPIE*VRGAYEVTREISTCTYRFGHIHEAP*YP*AGLFQSCVLDLHYHFAT*VLTMGHQRHHDTADMV*WILILIHILKSIIHDIKVTIDPAILYH*LSVYHTLPCPPWEHPFYQLGLVNIPAVQGLVQSLQILGVPLYVEDLYLMKSV*RSL*ILRTSVGHTWDPLLSTLFLSTPSYY*HTDLHLT*NARN*QLAPRSQHPSQPVEMMHLLLCDLASHPVSD*LDE  6149

Range 8: 5208 to 5429 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 41/74(55%) 0/74(0%) Plus/Minus
Query      721  PR*LPHPVPGTP*ESRSGPAHLLPARGARYQ*KHNLKNAIPLAT*YTYQRAETL*TRYLM*TYPNLDGGTQLIR  942
                P *LP P PGT * S +   H L  RGARYQ   +L  A  L T*YTY R  TL*TRYLM +Y +  GG Q IR
Subject   5208  PH*LPPPGPGTL*GSETDLVHPLLTRGARYQSTSSLNYANLLTT*YTYLRVMTL*TRYLMYSYQDRSGGNQAIR  5429

Range 9: 5207 to 5842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
332.4 bits(719) 0.0 151/212(71%) 0/212(0%) Plus/Minus
Query      308  HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN*FG  943
                HFLVLLGNT S NSVS  SPRCRALFR SKSLVF FTLKTFIS*RA DDPFE+*E  +DIL + C VLYS AH LIIN+Q+YT*PRTLEID *LP HSTQ+NR K*C SCY I*QV+QYQTNWTRAE K F *A* V L NCH L PEH ++L+ +  T S HVEHVINR + * TQ+ *QPNTPI G  LYRP T*C PI+T  EE+  FG
Subject   5207  HFLVLLGNTLSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*EPLLDILGIPC*VLYS*AHLLIINIQIYT*PRTLEIDN*LPVHSTQVNR*K*CTSCYAI*QVIQYQTNWTRAETKTFR*A*FVRLTNCHPLGPEHSKDLKPIWFTPS*HVEHVINRRVA*ITQTF*QPNTPI*G**LYRPAT*CTPIKTEAEEIKQFG  5842

Range 10: 5939 to 6148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 60/70(86%) 0/70(0%) Plus/Minus
Query        2  YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIRELGXXXXXXXXXXXXXXXRFLPWGISATTMQPTWYNG  211
                Y LS S VLMK PGKSAHALIGLDISMKLLDIRELG  SLVSL+S TTLPLRFLPWGISATT+QPTWY+G
Subject   5939  YPLSKSAVLMK*PGKSAHALIGLDISMKLLDIRELGSFSLVSLTSTTTLPLRFLPWGISATTIQPTWYSG  6148

Range 11: 5386 to 6147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.0 bits(740) 0.0 170/254(67%) 0/254(0%) Minus/Plus
Query        3  DSQGVPGTGCGN*RGLPARLNKKP*LQPXXXXSDTGRLARSYSKMRIISAG*FGCCDRGASNQFRAF*VKCRLVH***ESVL*NKVLCR*RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGMRMRPS*MNGYFQGGPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW*WSSGIQDSRDRAHGYQGVSWICPNL*VHVLTSLGTS*APRINSIG  764
                D   VPG G G+* G+  RLN+K * QPSSS*SDTG LARS+SK  IIS G* GCC+RGAS QFRAF*VKCR V ***E VL NKVL R   VCP+E+LR QRD H LFMR*RS  * G PRI RL*T+ C AGM  RPS*  G  QGG  S *YT S W RM GSIVTLISW+     WMR S HYTMS  S W *CPMVR  V +W*W S  QD +  AHGYQG SWICPNL*VHVL SL TS*APR  S+G
Subject   5386  DP*SVPGPGGGS**GVRTRLNEKS*FQPSSS*SDTG*LARSHSKRCIISTG*LGCCERGASCQFRAF*VKCRSVC***EGVLKNKVLSRGSQVCPTEVLRIQRDRHTLFMR*RSST*SGTPRIWRL*TRPCTAGMFTRPS**KGCSQGGQGSV*YTES*W*RMAGSIVTLISWMMDLRMWMRMSIHYTMSAVSWWR*CPMVRT*VAKW*WRSRTQD*KSPAHGYQGASWICPNL*VHVLISLVTS*APRTYSMG  6147

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 11

Range 1: 5207 to 5905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
410.2 bits(889) 0.0 192/233(82%) 0/233(0%) Minus/Plus
Query      245  TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHG  943
                TELV+ LR GLDRSTLG+GSIESLP D+CI LLEGLRSLGY+SIDNVLHVLGGGEPDRF+IL+VFR+QGVA+SEAY+LGLTKSLSFSPRPVSLIL+DLLDRIAR ASFLPVDLGAV GELV+NFERSRLSVDLY+NNKKVCSRIKYSAGD +YV +RFSGFKGIITRSS*DKGL*CE E+QGF  SEQ  A RGC+*DRV+  G+ K+D+EV +TQ AGG GW*GRL*P*YHG
Subject   5207  TELVDLLRFGLDRSTLGSGSIESLPLDKCIGLLEGLRSLGYSSIDNVLHVLGGGEPDRFQILRVFRSQGVAVSEAYELGLTKSLSFSPRPVSLILEDLLDRIARGASFLPVDLGAVNGELVVNFERSRLSVDLYVNNKKVCSRIKYSAGDPKYVQQRFSGFKGIITRSS*DKGL*CEAEHQGFGDSEQGPAPRGCL*DRVDRKGVPKKDKEVCNTQRAGGEGW*GRL*P*YHG  5905

Range 2: 5936 to 6148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 48/71(68%) 0/71(0%) Minus/Plus
Query        2  VPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV  214
                V  IPC L+R GTDAPW ES W GG GAQG+K +   LTDIKE HGYVQTYKC+C* PW+LHKH   TQ V
Subject   5936  VSTIPCGLYRGGTDAPWQESDWQGGCGAQGHKAKRA*LTDIKELHGYVQTYKCLC*FPWLLHKHRRLTQWV  6148

Range 3: 5206 to 5994 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
452.9 bits(982) 0.0 203/263(77%) 0/263(0%) Plus/Minus
Query      156  DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV  944
                DS HGASVP R N HGI+ TPPH      YP*YQGHNRPYHP PPA CV  TS S L  P  STRSH HPR A  CSE  NPW S+SH*RPLSHEERVMIPL PENL WTY  SPAEYFILEHTFLLL Y+STLNLERSKL TSSP TAPKSTGRNDA LA+RSSKSSSIRLTGRGLKLRLFVKPS  ASL ATP  RNTLRI  RSGSPPP+TWSTLSI+ *PK R PS+N IHLSKG DS+DPLPNV LS+P+RR STNSV
Subject   5206  DSCHGASVPPRYNPHGIVDTPPHSHPQVHYP*YQGHNRPYHPSPPALCVLHTSLSFLGTPFLSTRSHKHPRGAGPCSESPNPWCSASH*RPLSHEERVMIPLNPENLCWTYLGSPAEYFILEHTFLLLTYRSTLNLERSKLTTSSPFTAPKSTGRNDAPLAMRSSKSSSIRLTGRGLKLRLFVKPSSYASLTATPWLRNTLRIWNRSGSPPPNTWSTLSIDE*PKLRKPSNNPIHLSKGNDSMDPLPNVLLSRPKRRRSTNSV  5994

Range 4: 6073 to 6147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 18/25(72%) 0/25(0%) Plus/Minus
Query        3  TD*VDPGCL*STQGSQHMHL*VWTY  77
                T *V   CL*S QG+QH HL*VWTY
Subject   6073  TH*VSLRCL*SNQGNQHRHL*VWTY  6147

Range 5: 5487 to 6149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
407.5 bits(883) 0.0 184/221(83%) 0/221(0%) Minus/Plus
Query        1  YWTTC*IV*QDAHHFCRLIWVL*XXXXXXXXSVLG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY  663
                YW TC*I *Q+ HHF RLIWVL*+GS* SISSVLG*V* C LIIR+CA E*ST Q   SMS  DSQ SKGSS ALHEIKVFNVKRNTKDLE LNKALHRGD YETEL E+VFPRRTKKCVIH+ELVV+DGRVDCDLDIMD GL +V+EEE+PLYHVGCIVVALMPHGKNL+GKVV+EL+DTRLK PSSRISRSFMDMSKPISACADFPGYFIST D LN Y
Subject   5487  YWRTC*IA*QEVHHFYRLIWVL*TGS*LSISSVLG*V*ICMLIIRRCAQE*STQQGIPSMSNRDSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIEKVFPRRTKKCVIHRELVVKDGRVDCDLDIMDNGLGDVNEEEYPLYHVGCIVVALMPHGKNLTGKVVVELKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGY  6149

Range 6: 5208 to 5429 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 39/74(53%) 0/74(0%) Minus/Plus
Query      721  PN*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRVWQLAR  942
                PN L S     IG+ *V G *S    I VLGC*+ CV+ V   L TCSTCWE V++  SR   CSG R WQL R
Subject   5208  PNWLISFASALIGVR*VAGP*SHYL*ISVLGC*KVCVVWVTRQLTTCSTCWEGVNQIGSRSLGCSGARGWQLVR  5429

Range 7: 5207 to 5842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
324.1 bits(701) 0.0 149/212(70%) 0/212(0%) Plus/Minus
Query      308  HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN*FG  943
                HF VLLGNT S NSVS  SPRCRALFR SKSLVF FTLKTFIS*RA DDPFE+*ES +DIL + C VLYS AH LIIN+Q+YT*PRTLEID *LP HSTQINR K*C SCY I*QV+QYQTNWTRAE K FC*A*LV L NCH L PEH ++LE +  T SQHVEHV+N  +T  TQ+ *QPNT I    LY P T*  PI+   +E+N FG
Subject   5207  HFFVLLGNTFSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*ESLLDILGIPC*VLYS*AHLLIINIQIYT*PRTLEIDN*LPVHSTQINR*K*CTSCYAI*QVLQYQTNWTRAETKTFC*A*LVRLTNCHPLAPEHPKDLEPIWFTPSQHVEHVVN*RVTQTTQTF*QPNTLI*R**LYGPAT*RTPIKAEAKEINQFG  5842

Range 8: 5939 to 6148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 59/70(84%) 0/70(0%) Plus/Minus
Query        2  YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIRELGXXXXXXXXXXXXXXXRFLPWGISATTMQPTWYNG  211
                Y LS S VLMK PGKSA ALIGLDISMKLLDIRELG  SLVSLSS TTLP+RFLPWGISATT+QPTWY+G
Subject   5939  YPLSKSAVLMK*PGKSAQALIGLDISMKLLDIRELGSFSLVSLSSTTTLPVRFLPWGISATTIQPTWYSG  6148

Range 9: 5469 to 6149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
366.7 bits(794) 0.0 167/227(74%) 0/227(0%) Plus/Minus
Query        1  VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLMKSA**SL*NLRISDGHTERHLQSTLF*STLSYY*CTSLHLT*NARN*LLAPRSQHPNQPAEMMRILLYDLASRPVSD*LDE  681
                VPIE + GAYEV RE+ST TYRFGHIHE P*YP*AR    C+ ELH HL ++IL MGHQCH D T MV*W LLLIH+ +  IHDIKVTIDPTIL+HQL VY+ LL P W++ F QLGLI IPA+Q  VQSL ILG+PLHIKDLYLMKS **SL* LRIS GHT   L STLF ST SYY* T LHLT*NARN* LAPRSQHPNQP EMM +LL DLAS PVSD*LDE
Subject   5469  VPIE*VCGAYEVTREISTGTYRFGHIHEAP*YP*ARLF*PCVLELHNHLASQILAMGHQCHHDTTHMV*WILLLIHIPKSIIHDIKVTIDPTILHHQLSVYYTLLCPSWEHLFYQLGLINIPAVQGLVQSLQILGVPLHIKDLYLMKSV**SL*ILRISVGHTWDPLLSTLFLSTPSYY*HTDLHLT*NARN*QLAPRSQHPNQPVEMMHLLLCDLASPPVSD*LDE  6149

Range 10: 5208 to 5429 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 36/74(49%) 0/74(0%) Plus/Minus
Query      721  PR*LPHPVPGTP*ESRSGPAHLLPARGARYQ*KHNLKNAIPLAT*YTYQRAETL*TRYLM*TYPNLDGGTQLIR  942
                P *LP P  GTP* S +   H LP RGAR Q   N   A  L T YTY +  TL TRYL  +Y     G Q IR
Subject   5208  PH*LPPPGSGTP*GSGTDLVHPLPTRGARCQLTSNPNYANLLTTQYTYLKVMTLWTRYLTYSYQGRSEGDQPIR  5429

Range 11: 5386 to 6147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
354.8 bits(768) 0.0 178/254(70%) 0/254(0%) Minus/Plus
Query        3  DSQGVPGTGCGN*RGLPARLNKKP*LQPXXXXSDTGRLARSYSKMRIISAG*FGCCDRGASNQFRAF*VKCRLVH***ESVL*NKVLCR*RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGMRMRPS*MNGYFQGGPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW*WSSGIQDSRDRAHGYQGVSWICPNL*VHVLTSLGTS*APRINSIG  764
                D  GVP  G G+* G+ ARLNKK * QPSSS*SDTG LARS+SK  IIS G*FGCC+RGAS QFRAF*VKCR V ***E VL NKVL R   VCP+EILR QRDHH LFMR*RSLM* G PRI RL*T+ C AGM MRPS*     Q G RS *YT SWW RMVGSIVTLISWI      MRRS HYTM V S WH*CPM RI + RW WSS  Q  +  AHGYQG SWICPNL*V VL SL TS*AP+  S+G
Subject   5386  DP*GVPEPGGGS**GVRARLNKKS*FQPSSS*SDTGGLARSHSKRCIISTG*FGCCERGASCQFRAF*VKCRSVC***EGVLKNKVLSRGSQVCPTEILRIQRDHHTLFMR*RSLM*SGTPRIWRL*TRPCTAGMFMRPS**KRCSQEGQRSV*YTESWW*RMVGSIVTLISWIMDLGM*MRRSIHYTMWVVSWWH*CPMARI*LARWLWSSRTQG*KSLAHGYQGASWICPNL*VPVLISLVTS*APQTYSMG  6147

Grapevine virus A isolate P163 M5, complete genome

Sequence ID: DQ855082.2 Length: 7471 Number of Matches: 16

Range 1: 5696 to 6259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.0 bits(692) 0.0 135/188(72%) 0/188(0%) Minus/Plus
Query        1  LG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY  564
                LG* *  T I R+CA  *    VT  MS  DSQ ++GS   L EIKVFNVKR+TKDLE+LNK+LHRGD Y+TEL E+VFPRRTKKCV+H+EL+V+DGRVDCDLD+MD+GLD+VDE+EFPLYHVGCIVVALMPHGKNL GKV +E+ DTRLK  ++RISRS MD+SKP+SACADFPGYFIST D LN Y
Subject   5696  LG*A*IYTSITRRCAQG*VRWWVTAVMSSVDSQGTQGSRSDLQEIKVFNVKRHTKDLESLNKSLHRGDVYDTELIEKVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVALMPHGKNLQGKVAVEVVDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTTDLLNGY  6259

Range 2: 5321 to 5524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 25/68(37%) 0/68(0%) Minus/Plus
Query      736  N*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRV  939
                +*L+S V V + + *+ GL*S CP + V  C*    +* +L+ I     W  V RT  +    SG  V
Subject   5321  S*LNS*VRVAVVVI*IEGL*SPCPTLSVCVC*LI*RV*GILV*IAFFIFWVVVVRTDLKSFESSGGTV  5524

Range 3: 5535 to 5606 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 13/24(54%) 0/24(0%) Minus/Plus
Query      654  RGLPARLNKKP*LQPXXXXSDTGR  725
                RG  AR  KK  LQP     DTGR
Subject   5535  RGFTARRQKKFVLQPKDGDRDTGR  5606

Range 4: 5317 to 6024 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 125/236(53%) 0/236(0%) Minus/Plus
Query      236  TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHGYRA  943
                TELVEFL        L  GS+ESL +  C+RLL  L+ LGY SID++L++LGGG  DRFEI ++FR  G+ I EA QLG+ KSL +SPR V  ILDDLL R+ R ++FLP DLGAV GEL+I F  SRLSVDLY+NNKKVC+R+    GD+ YV  RFSG+ GI  RS+ + GL C+E Y+GF  SEQ  A  GC+  R    G+  +DQEVR  Q     G    L*P  +G R+
Subject   5317  TELVEFLGQSRGSCNLNRGSLESLSYVECLRLLTDLKGLGYPSIDSILYILGGGSADRFEIFRIFRRHGIGIGEALQLGVRKSLCYSPRTVIEILDDLLGRLGRGSAFLPCDLGAVKGELLITFRPSRLSVDLYVNNKKVCTRVSQVVGDSSYVLSRFSGYPGIALRSTGN*GLQCQEAYKGFGESEQEPAQGGCLRHRTHREGVPSKDQEVRCAQRTHRQGRSRGL*PGSNGLRS  6024

Range 5: 6046 to 6237 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 25/64(39%) 0/64(0%) Minus/Plus
Query       23  VPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKH  214
                VP +P  LH R  +A W ES   GG  + G+ ++     D+K+ HG +QT +C+   PW+LH+H
Subject   6046  VPFVPRWLHSRSVNATWQESAREGGG*SGGHSSEEWSGPDLKKSHGLIQTSECLRRFPWILHQH  6237

Range 6: 5316 to 6104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.4 bits(394) 0.0 112/263(43%) 0/263(0%) Plus/Minus
Query      156  DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV  944
                DS H A   R C++ G  GT PH       P   GHN    P     C  RTSWS    P        HP  A  CS+  NP Y+S H*RP    +   IP  PENL  T   SP     L HTFLLL Y+STLNL+  K+I++SP+TAP+S G+N   L    S+SSSI +T  GL  +LF+ PS  AS I  PC R   +IS  S  PPP     LSI   PK     +   H +  +DS DPL  + L +   RNSTNSV
Subject   5316  DSCHVALTLRLCSQRGTKGTHPHQRRLDRSPLDPGHNPRDRP*R*VLCAQRTSWSFEGTPSL*VLCRKHPPCAGSCSDSPNPLYAS*H*RP*FPVDLSAIPGYPENLLRT*LLSPTT*LTLVHTFLLLTYRSTLNLDGRKVISNSPLTAPRSHGKNALPLPNLPSRSSSISITVLGL*HKLFLTPSCKASPIPIPCLRKIRKISNLSALPPPRI*RMLSILGYPKPFKSVNRRRHST*DKDSKDPLFKLQLPRL*PRNSTNSV  6104

Range 7: 6160 to 6258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 25/33(76%) 0/33(0%) Plus/Minus
Query        2  YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIR  100
                Y LS S VLMKYPGKSA AL GLD SM+LL+IR
Subject   6160  YPLSKSVVLMKYPGKSAQALRGLDKSMRLLEIR  6258

Range 8: 5638 to 5952 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 56/105(53%) 0/105(0%) Plus/Minus
Query      308  HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK  622
                HFLVL GNT S +SVS  SP CR LFR SKS V L TLKT IS R+  DP+  *ES  DI +VT  + +  AH L+I+V +Y *PR  E   *LP     I RQ+
Subject   5638  HFLVLRGNTFSMSSVS*TSPLCRLLFRLSKSFVCLLTLKTLISCRSERDPWVP*ESTEDITAVTHHLTHPCAHLLVIDV*IYA*PRWTESYQ*LPLDCP*ITRQE  5952

Range 9: 5323 to 5607 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 35/95(37%) 0/95(0%) Plus/Minus
Query      653  VVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN*  937
                +VQY  +   A A+ F  A*L SL++  T+ PE  ++ ++VR T++Q++++ I   I *  Q  *Q  T   GQ L RP        T T E N*
Subject   5323  IVQYLDHRPWAVAQTFSDA*L*SLSDPDTVPPEDSKDFKSVRTTTTQNIKNAIYTRIP*TLQIS*QTQTLNVGQGL*RPSIQITTTATLT*EFN*  5607

Range 10: 6046 to 6105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 17/20(85%) 0/20(0%) Plus/Minus
Query      155  RFLPWGISATTMQPTWYNGN  214
                RFLP GI+ATTMQPTWY GN
Subject   6046  RFLPCGINATTMQPTWYKGN  6105

Range 11: 5831 to 6259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 58/143(41%) 0/143(0%) Plus/Minus
Query        1  VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDL  429
                VPIE +  A EV RE+   T RFG +HET * P   +L++ +   + HL  +IL M H  +D A ++V  EL+LI+++   +H I+VTI  T+L  +  V++ALLGP  ++   +  ++ IP +Q+ VQ+L IL +PL I+DL
Subject   5831  VPIEQVCSADEVSREICASTQRFG*VHETS*DPGRSTLQTSVHHFNRHLPLQILAMWH*RYDYAANVVQRELILINVV*TGVH*IQVTIHATVLDDEFSVHNALLGPSREHLLYEFCVVNIPPVQALVQTLQILCMPLDIEDL  6259

Range 12: 5197 to 5307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 14/37(38%) 0/37(0%) Plus/Minus
Query      834  RNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV  944
                R+P S   H +  +DS D L  + L  P  ++STN V
Subject   5197  RHPVSKRRHST*DKDSKDSLFKLQLPLP*PKSSTNPV  5307

Range 13: 5763 to 5900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 22/46(48%) 0/46(0%) Minus/Plus
Query      360  *RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGM  497
                *+ +CP  ILR  RD   ++ + RS M RGI RI R+*T+ C  GM
Subject   5763  *QQLCPQ*ILRVPRDRAQIYRKLRSSMSRGIQRIWRV*TRACTGGM  5900

Range 14: 5940 to 6119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 27/60(45%) 0/60(0%) Minus/Plus
Query      141  GPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW  320
                GPRSA  T +   R V  IVT I W       MR SS  T   A S  *C M RI   RW
Subject   5940  GPRSALCTENSSSRTVAWIVTWI*WTPV*TTLMRMSSLCTTLAA*S*R*CHMARICKGRW  6119

Range 15: 5198 to 5314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 17/39(44%) 0/39(0%) Minus/Plus
Query      827  TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSL  943
                T LVE L  G     L   S+ESL +  C+RLL G R +
Subject   5198  TGLVELLGQGSGSCNLNRESLESLSYVECLRLLTGCRRI  5314

Range 16: 6162 to 6257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 17/32(53%) 0/32(0%) Minus/Plus
Query        3  GYQGVSWICPNL*VHVLTSLGTS*APRINSIG  98
                G Q VSW  PNL*V    SL TS A +  S+G
Subject   6162  GSQEVSWTYPNL*VLAQISLDTSSALQTCSMG  6257

Grapevine virus A isolate I327 5, complete genome

Sequence ID: KC962564.1 Length: 7349 Number of Matches: 11

Range 1: 5685 to 6137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 117/151(77%) 0/151(0%) Minus/Plus
Query        1  SSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY  453
                +S  + +IKVF+VKRNT+DLE+LNK+LHRGD Y+TEL E+VFPRRTKKCVIH+EL+V+DGRVDCDLDIMD GLD++DE EFPLYHVGCIVVALMPHGKNL GKV +E+ DTRLK  SSRISR+ MDMSKP+SACADFPGYFIST D LN Y
Subject   5685  ASSFVQDIKVFSVKRNTRDLESLNKSLHRGDVYDTELIEKVFPRRTKKCVIHRELIVKDGRVDCDLDIMDGGLDDIDEVEFPLYHVGCIVVALMPHGKNLQGKVAVEVLDTRLKDGSSRISRTLMDMSKPLSACADFPGYFISTSDLLNGY  6137

Range 2: 5198 to 5701 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.6 bits(451) 0.0 96/168(57%) 0/168(0%) Minus/Plus
Query      440  TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRS  943
                TEL EFL    D  +L  GS+ESL + +C++LL  L+SLGY SID++L++LGGGE +RFEI ++FR  G+ I EA QLG+ K LS SPR    ILDDLL R+ R  +FLP DLGAV GELV+ F  SRLSVDLY+NNKKV +R   + GD  YV RRF+G+KG+I R+
Subject   5198  TELSEFLVHSSDSYSLSEGSLESLSYVQCVQLLSDLKSLGYQSIDSILYILGGGEAERFEIYRIFRRHGIGIGEALQLGVRKCLSNSPRSTQAILDDLLSRLGRSNAFLPSDLGAVKGELVVTFHSSRLSVDLYVNNKKVVTRSIQAEGDINYVARRFAGYKGLILRA  5701

Range 3: 5700 to 6137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 58/146(40%) 0/146(0%) Plus/Minus
Query        1  VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLM  438
                VPI+ + GA E+PRE+ T T    HIH  P YP    L+  + +L  HL  EIL M HQCH +A  +V  EL L++++Q  +HD+++ +  TIL ++L V HALL P  +  F +  ++ + ++Q+ V++L I GIPL  +DL ++
Subject   5700  VPIQ*VAGADEIPREIGTGTQWL*HIH*CPGYPG*SILQPGV*DLDGHLALEILAMWHQCHHNAPYVVERELHLVYVVQAPVHDVQIAVHATILDYELPVDHALLCPSGEDLFYEFRVVHVTSVQALVEALEIPGIPLDAEDLNVL  6137

Range 4: 5197 to 5697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 76/167(46%) 0/167(0%) Plus/Minus
Query      444  RVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV  944
                R M PL P NL  T   SP+    L  TFLLL  +STLNL+   + TSSP+TAP+S GR    L    ++SSSI     GL L+ F+ PS  AS I  PC R    IS RS SPPP  +S LSI  *P+     +N  H +   DS DP   + LS    RNS NSV
Subject   5197  RRMRPLYPANLLAT*LISPSA*IDLVTTFLLLT*RSTLNLDEWNVTTSSPLTAPRSLGRKALLLPSLDNRSSSIACVLLGLLLKHFLTPSCKASPIPIPCLRKIR*ISNRSASPPPRIYSMLSIL**PRLFKSLNNWTHCT*DNDSNDPSLKL*LSLLCTRNSLNSV  5697

Range 5: 5246 to 5695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 51/150(34%) 0/150(0%) Plus/Minus
Query      446  RDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT  895
                +D+ F   E   DI+ +   +   R H L+INV+VYT*P  +E    L  + +QI  +K  A      Q+V Y+    R  A+    A*L SL+N  ++ PE   +L++ RL ++Q++ + I   IT*      Q +T   GQ L RP T
Subject   5246  KDEAFVPCEPSCDIVDIPFCLN*PRDHLLVINVKVYT*PGRMECHNQLTFNGSQITGEKGVAPPKPRQQIV*YRLCTPRTIAQTLSDA*L*SLSNPDSVPPEDSIDLKSFRLATTQNI*YAIYTLIT*TL*ITQQLDTLYIGQ*L*RPFT  5695

Range 6: 5702 to 5830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 29/43(67%) 0/43(0%) Plus/Minus
Query      308  HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS  436
                HF VLLG T S +SVSY SP CR L R S+SLVFL TLKT +S
Subject   5702  HFFVLLGKTFSMSSVSYTSPLCRLLLRLSRSLVFLLTLKTLMS  5830

Range 7: 6041 to 6136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 22/32(69%) 0/32(0%) Plus/Minus
Query        2  YRLS*SGVLMKYPGKSAHALIGLDISMKLLDI  97
                Y  S S VLMKYPGKSA AL G DIS+ +LDI
Subject   6041  YPFSRSLVLMKYPGKSAQALSGFDISISVLDI  6136

Range 8: 5924 to 5983 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 16/20(80%) 0/20(0%) Plus/Minus
Query      155  RFLPWGISATTMQPTWYNGN  214
                RFLP GISATTM PTW  GN
Subject   5924  RFLPCGISATTMHPTW*RGN  5983

Range 9: 5885 to 6136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 33/84(39%) 0/84(0%) Minus/Plus
Query        2  YHGYRAXXXXXXGVPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV  253
                +HG   G    GGVP +P R+H  GTDA W ES   GG     ++ +G  + DI++ +GYV+  +C+C  P V H+H   T+ V
Subject   5885  HHGRGPGRHRRGGVPSLPRRVHCGGTDATWQESPGQGGRRGPRHQVEGWIIQDIQDTNGYVKATECLCRFPGVFHQHQRPTEWV  6136

Range 10: 5711 to 5842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 19/44(43%) 0/44(0%) Minus/Plus
Query      296  GL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQ  427
                GL  +EEYQG R  +Q  A R  V       G+ ++D+EVRD Q
Subject   5711  GLQRQEEYQGSREPQQEPAQR*RVRHGTHRKGLPQKDKEVRDPQ  5842

Range 11: 5710 to 5982 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 38/91(42%) 0/91(0%) Plus/Minus
Query      156  DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RP  428
                DS H ASVP +C   G  GTPP    P   P*    +   HP   APC SRTS S    P       T    A  C    +PWYSS  *RP
Subject   5710  DSCHVASVPPQCTLRGREGTPPRLCRPGPRP*CPDRSPRDHP*L*APCGSRTSLSFWGRPFL*VPCRTRHLCAGSC*GSRDPWYSS*R*RP  5982

Nucleotide Sequence (334 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
334

Descriptions

Alignments

Grapevine virus A isolate KWVMo4 1, complete genome

Sequence ID: DQ855083.2 Length: 7351 Number of Matches: 6

Range 1: 4044 to 4373 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.7 bits(519) 0.0 95/110(86%) 0/110(0%) Plus/Plus
Query        3  NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  332
                NYE  RRKY ACHGIG+QMFSV K +YQ ++I+SLPELERCE EFM+KRVEKSA LIEQH+GRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG
Subject   4044  NYEANRRKYKACHGIGQQMFSVFKEIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  4373

Range 2: 4043 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.0 bits(356) 0.0 83/111(75%) 0/111(0%) Minus/Minus
Query        2  GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*F  334
                GPNLHSTECAK A+V PAFASTP FSIFV VCC R I R*LLGQSGSL P CCSI  ALFSTLF MNS SHLSSSG +SIS  W*   +TENI  PIPW A YFLL  S*F
Subject   4043  GPNLHSTECAKHAIVCPAFASTPLFSIFVHVCCLRKIFR*LLGQSGSLLPACCSIRPALFSTLFFMNSISHLSSSGSESISFSW*ISLKTENICWPIPWHALYFLLLAS*F  4375

Range 3: 4043 to 4369 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 45/109(41%) 0/109(0%) Plus/Plus
Query        2  KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI  328
                KL*G++E++  +PW+   +V   +G LP E  R ++ T E+   +HE+ESG++R ++RTA   +* RLAQQL +D P+A ++++DG+ RG CK R+++ +LC L  +Q+
Subject   4043  KL*GQQEEIQSMPWDRPADVLRLQGDLPAERDRFAS*TGEVRNGVHEEESGKERGSNRTACW*E*PRLAQQLSEDFPQATDMYKDGKERGGCKSRADNSMLCALSAVQV  4369

Range 4: 4044 to 4352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 46/103(45%) 0/103(0%) Minus/Minus
Query        3  VCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLII  311
                V KA   L   CI+PSL HL   LLL+E L++VAGPV +T T +LFY   A  HSL HE     L+F +R  +  LVD L + +HL    MA  +  P+ LI+
Subject   4044  VRKACYCLPCFCIHPSLFHLCTCLLLEENLQIVAGPVGVTPTSMLFY*TRALFHSLLHELHFAPLQFRKRIDLFQLVDLLEDGEHLLAYPMACFVFPPVGLIV  4352

Range 5: 4153 to 4353 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 31/67(46%) 0/67(0%) Plus/Plus
Query      112  NSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHT  312
                N R  + +S* REW++A  **NS  V V  TGPAT  R+S S++  +RW+ EG MQ+  +   AL T
Subject   4153  NWRGAKWSS*RREWKRARV**NSMLVGVTPTGPATI*RFSSSNRHVQRWKREGWMQKQGRQ*HALRT  4353

Range 6: 4042 to 4365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 41/108(38%) 0/108(0%) Minus/Minus
Query        1  CIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRRDTFSSSPHNF  324
                C   S QS       LH PL+ PS     A G S  SCWAS  H    AVL   R  PLS S*     S V       S GR P   +T     HG     S  PH+F
Subject   4042  CTALSAQSMLLSALLLHPPLSFPSLYMSVA*GKSSDSCWASRGHSYQHAVLLDPRSFPLSSS*TPFRTSPVQEANRSLSAGRSP*RRRTSAGLSHGMLCISSCWPHSF  4365

Grapevine virus A isolate P163 M5, complete genome

Sequence ID: DQ855082.2 Length: 7471 Number of Matches: 6

Range 1: 4045 to 4374 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.9 bits(515) 0.0 94/110(85%) 0/110(0%) Plus/Plus
Query        3  NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  332
                N+E  RRKY ACHGIG+QMFSV K +YQ ++I+SLPELERCE EFM+KRVEKSA LIEQH+GRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG
Subject   4045  NFEANRRKYRACHGIGQQMFSVFKEIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  4374

Range 2: 4044 to 4376 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 79/111(71%) 0/111(0%) Minus/Minus
Query        2  GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*F  334
                GPNLHSTECAK A+V PAFASTP FSIFV VCC R I R*LLGQSGSL P CCS+  ALFST F MNS SHLSSSG +SIS   *   +TENI  PIPW A YFLL  S F
Subject   4044  GPNLHSTECAKHAIVCPAFASTPLFSIFVHVCCLRKIFR*LLGQSGSLLPACCSMRPALFSTRFFMNSISHLSSSGSESISFS**ISLKTENICWPIPWHALYFLLLASKF  4376

Range 3: 4051 to 4374 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 47/108(44%) 0/108(0%) Minus/Minus
Query        9  AKSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPL  332
                A+ A YR+C+A   L+ LCI+PSL HL A LLL+E L++VAGP+ +T T +LFY+     HSL HEF    L+F +R  +  L+D L + +HL   ++A  +L  + L
Subject   4051  AEPAQYRMCEARYRLSRLCIHPSLFHLCACLLLEEDLQIVAGPIGVTPTSMLFYEARTLFHSLLHEFHFAPLQFRKRVDLF*LIDLLEDGEHLLAYTVACSVLPSVGL  4374

Range 4: 4044 to 4376 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 44/111(40%) 0/111(0%) Plus/Plus
Query        2  KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQIWP  334
                KL*G++++V  +P     NV   +G L  +  R+++ T E+   IHE+ SG++    RTA   +* RLAQQL +D+P+A ++H+DG+ RG CKG ++  +L T  T+Q+ P
Subject   4044  KL*GQQKEVQSMPRYRPANVLRLQGDLSAKRDRLAS*TGEVRNGIHEEASGKECGPHRTACW*E*PRLAQQLSEDLPQATDMHKDGKERGGCKGGTDDSVLRTFGTVQVRP  4376

Range 5: 4154 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 32/74(43%) 0/74(0%) Plus/Plus
Query      112  NSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTLYYADLA  333
                N R  + NS*  EW++    *NS  V V   GPAT  R S S++ A+RW+ EG MQR  +   A H  Y A  A
Subject   4154  NWRGAKWNS*RSEWKRVRAS*NSMLVGVTPIGPATI*RSSSSNRHAQRWKREGWMQRRDRR*RASHIRYCAGSA  4375

Range 6: 4175 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 29/67(43%) 0/67(0%) Minus/Minus
Query      133  GQICIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*I  333
                G+ C V +V+S      PLH PL+ PS C   A G S  SCWA+  H    AVL      PL+ S*I
Subject   4175  GRTCTVPNVRSTLSSVPPLHPPLSFPSLCMSVA*GRSSDSCWANRGHSYQHAVL*GPHSFPLASS*I  4375

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 6

Range 1: 4040 to 4369 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
261.3 bits(564) 0.0 104/110(95%) 0/110(0%) Plus/Plus
Query        3  NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  332
                +YEG RRKYLACHGIGRQMFSVLK  YQWRDIESLPELE+CEKEFMRKRVEKSA+LIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG
Subject   4040  SYEGNRRKYLACHGIGRQMFSVLKETYQWRDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  4369

Range 2: 4042 to 4371 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 94/110(85%) 0/110(0%) Minus/Minus
Query        5  GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*  334
                GPNLH+TE AKQAMV*PAFASTP FSIFV VCCFR ILR*LLGQSGSLRPECCS+  ALFSTLFLMNSFSH SSSG DS+SLH *  FRTENI RPIPWQARYFLL PS*
Subject   4042  GPNLHNTE*AKQAMV*PAFASTPLFSIFVHVCCFRKILR*LLGQSGSLRPECCSMRAALFSTLFLMNSFSHFSSSGNDSMSLH**VSFRTENI*RPIPWQARYFLLLPS*  4371

Range 3: 4043 to 4366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 63/108(58%) 0/108(0%) Minus/Minus
Query        6  KSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLI  329
                +SA +R+ KASDGLT  C++P LLH  A LLLQE LEVVA PVW+TST*+L  + C F +SLSHE FLT LEFWQ FY+PPL+  L*N +HL P S+A E+   +  +
Subject   4043  ESAQHRMSKASDGLTCFCVHPPLLHFCARLLLQEDLEVVARPVWVTST*MLLDEGCTFFYSLSHELFLTFLEFWQ*FYVPPLIGLL*NGEHLTPYSVASEVFPSVTFV  4366

Range 4: 4054 to 4365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 63/104(61%) 0/104(0%) Plus/Plus
Query       17  EEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI  328
                ++++ RLP N A +V  SKG L MEG+RI ARTREM*ER+HEKES +K    R A RSK* RLA+QLPQD+PEA N+H++GE  G  K RSNHRLLC+   +QI
Subject   4054  QKEIPRLPRNRASDVLRSKGDLSMEGHRIIARTREM*ERVHEKESRKKCSPHRAAFRSK*PRLAEQLPQDLPEATNVHKNGEEGGGRKSRSNHRLLCSFGVVQI  4365

Range 5: 4068 to 4367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 60/100(60%) 0/100(0%) Minus/Minus
Query       31  QICIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRR  330
                +IC   + QSKRWFD  L  P +SP  C F ASG S*GSC ASL HFDL+A    + F  LSFS* LSHISRVLA IL PSI R PLE +T  A F G+R
Subject   4068  RICTTPNEQSKRWFDLLLRPPPSSPFLCTFVASGRS*GSCSASLGHFDLNAAR*GLHFFLLSFS*TLSHISRVLAMILCPSIDRSPLERRTSDALFRGKR  4367

Range 6: 4068 to 4343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 56/92(61%) 0/92(0%) Plus/Plus
Query       31  SPAMELGAKCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLAL  306
                S A E G +C  F*R   NGG *N CQNSR+VRK+S*ERE +K     +S QVEV QTG ATTSR S*S+K A++WR  G  Q+ VKPSLAL
Subject   4068  SLATE*GVRCSPF*RRPINGGT*NHCQNSRNVRKSS*ERE*KKVQPSSSSIQVEVTQTGRATTSRSS*SNKRAQKWRRGGWTQKQVKPSLAL  4343

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 6

Range 1: 4054 to 4383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.6 bits(558) 0.0 102/110(93%) 0/110(0%) Plus/Plus
Query        3  NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  332
                +YEG RRKYL+CHGIGRQMFSVLK  YQW+DIESLPELE+CEKEFMRKRVEKSA+LIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG
Subject   4054  SYEGNRRKYLSCHGIGRQMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  4383

Range 2: 4056 to 4385 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 92/110(84%) 0/110(0%) Minus/Minus
Query        5  GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*  334
                GPNLHSTE AKQAMV PAFASTP FSIFVQVCC R ILR*LLGQSGSL PECCSIS ALFST FL+NSFSH SSSG DSIS HW*    TENIWRPIP Q RYFLLFPS*
Subject   4056  GPNLHSTE*AKQAMVCPAFASTPLFSIFVQVCCLRKILR*LLGQSGSLLPECCSISAALFSTRFLINSFSHFSSSGSDSISFHW*VSLSTENIWRPIP*QLRYFLLFPS*  4385

Range 3: 4053 to 4379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 65/109(60%) 0/109(0%) Plus/Plus
Query        2  KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI  328
                KL* E+EKV  L WNWAPNV S++  LP+EGYR++ART +M ERI+E+   ++R TDRTALR K*  LAQQLPQD+P+ A+LH+DG+ R  CKGR++H L C+LC +Q+
Subject   4053  KL*REQEKVP*LSWNWAPNVLSAQRDLPVEGYRVTART*KMRERIYEEAG*KERCTDRTALRKK*P*LAQQLPQDLPQTADLHKDGKERSGCKGRTDHSLFCSLCAVQV  4379

Range 4: 4057 to 4383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 62/109(57%) 0/109(0%) Minus/Minus
Query        6  AKSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLI  332
                ++ A +RV K S GL+GLCI+ SL HL AGLL +E LEV+AGPV +TS+*VLFYQ  A  + L H+FFL   +FWQ  YI PLV    +*+HLAPNSM  ++LSP+P I
Subject   4057  SEPAQHRVSKTSYGLSGLCIHSSLFHLCAGLLFEEDLEVIAGPVRVTSS*VLFYQCSALFNPLPHKFFLAFFKFWQ*LYILPLVSLFEH*EHLAPNSMTAKVLSPVPFI  4383

Range 5: 4052 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 62/108(57%) 0/108(0%) Minus/Minus
Query        1  CIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRRDTFSSSPHNF  324
                C  QS Q+K W  RPLH  L+ PS CR A  G S*G+CWAS  HF LSAVLSV R    + S*ILS I +VLA  LYPS G+    L+TFGAQFH    TFS S H+F
Subject   4052  CTAQSEQNKLWSVRPLHPLLSFPSLCRSAV*GRS*GNCWASQGHFFLSAVLSVQRSFQPASS*ILSRIFQVLAVTLYPSTGKSL*ALRTFGAQFHDS*GTFSCSLHSF  4375

Range 6: 4052 to 4366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 58/105(55%) 0/105(0%) Plus/Plus
Query        1  EIMRGRGESISPAMELGAKCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTL  315
                E M+G GES    MELGAKC Q  +  T+G I*+ CQN ++ RKN *    ++A H**NSTQ EV  TGPA TSR S +S+PA+RW+ E  MQRP +P L L TL
Subject   4052  EAMKGTGESTLAVMELGAKCSQCSKRLTSGRI*SHCQNLKNARKNL*GSGLKRALH**NSTQEEVTLTGPAITSRSSSNSRPAQRWKREEWMQRPDRP*LVLLTL  4366

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 6

Range 1: 4054 to 4383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.6 bits(558) 0.0 102/110(93%) 0/110(0%) Plus/Plus
Query        3  NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  332
                +YEG RRKYL+CHGIGRQMFSVLK  YQW+DIESLPELE+CEKEFMRKRVEKSA+LIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG
Subject   4054  SYEGNRRKYLSCHGIGRQMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG  4383

Range 2: 4056 to 4385 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.0 bits(369) 0.0 91/110(83%) 0/110(0%) Minus/Minus
Query        5  GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*  334
                GPNLHSTE AKQAMV PAFASTP FSIFVQVCC R ILR*LLGQSGSL PECCSIS ALFST FLMNSFSH SSSG DSIS H *    TENI RPIP Q RYFLLFPS*
Subject   4056  GPNLHSTE*AKQAMVCPAFASTPLFSIFVQVCCLRKILR*LLGQSGSLLPECCSISAALFSTRFLMNSFSHFSSSGSDSISFH**VSLSTENI*RPIP*QLRYFLLFPS*  4385

Range 3: 4053 to 4379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 69/109(63%) 0/109(0%) Plus/Plus
Query        2  KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI  328
                KL*GE EKV  L WNWA NV  ++  L +EGYR++A TREM ERIHE+   ++R TDRTALR K*SRLAQQLPQD+P+A +LHE+GE RGRCKG ++H L C+L  MQ+
Subject   4053  KL*GE*EKVPELSWNWASNVLCAQRDLSVEGYRVTAGTREMRERIHEETGRKERSTDRTALRKK*SRLAQQLPQDLPQATDLHENGEKRGRCKGWTDHSLFCSLRAMQV  4379

Range 4: 4057 to 4383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.9 bits(312) 0.0 65/109(60%) 0/109(0%) Minus/Minus
Query        6  AKSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLI  332
                ++ A*+ V K S GL+ LCIYPS LH RAGLLL+E LEV+AGPV ITS+*VLFYQ CA  +   HEFFL  LEF Q  YI PL+    + +HL PNSM  ++LSP+PLI
Subject   4057  SEPA*HGVSKTSYGLSSLCIYPSFLHFRAGLLLEEDLEVIAGPVGITSS*VLFYQCCALFYPFPHEFFLAFLEFRQ*LYILPLISLFEHREHLTPNSMTTQVLSPIPLI  4383

Range 5: 4052 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 64/108(59%) 0/108(0%) Minus/Minus
Query        1  CIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRRDTFSSSPHNF  324
                CI +S Q+K W  +PLHLPL SP SCR  A G S*G+CWAS DHF LSAVLSV+R      S*ILS ISRV A  LYPS  +     +TF AQFH    TFS SPH+F
Subject   4052  CIARSEQNKLWSVQPLHLPLFSPFSCRSVA*GRS*GNCWASRDHFFLSAVLSVLRSFLPVSS*ILSRISRVPAVTLYPSTDKSL*AQRTFDAQFHDNSGTFSYSPHSF  4375

Range 6: 4052 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 62/108(57%) 0/108(0%) Plus/Plus
Query        1  EIMRGRGESISPAMELGAKCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTLYYA  324
                E MRG GES    MELG KC    +   +G I*+ C+NSR+ RKNS*    ++A H**NSTQ EVI TGPA TSR S S++PAR+WR EG*MQR  +P L L T  YA
Subject   4052  EAMRGIGEST*VVMELGVKCSLCSKRLISGRI*SHCRNSRNARKNS*GNG*KRAQH**NSTQEEVIPTGPAITSRSSSSNRPARKWRKEG*MQRLDRP*LVLLTPCYA  4375

Nucleotide Sequence (601 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
61
122
183
244
305
366
427
488
549
601

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
204.8 1292.1 26% 3.787e-101 42% DQ787959.1
204.8 1307.7 27% 3.41e-100 44% DQ855088.1
203.0 1248.6 29% 4.668e-100 40% JX559641.1
188.5 721.3 39% 2.205e-84 34% DQ855081.2
184.4 763.3 50% 2.694e-83 25% AY244516.1

Alignments

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 13

Range 1: 3817 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.8 bits(444) 0.0 82/89(92%) 0/89(0%) Plus/Plus
Query      334  PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKYL  600
                P++THL LSEKLNEL PFDLKAKEDREQYT+AGRTEQIDEEGYGQWGANPM+HKALYLRHTSDDTATFMMSVKKRLRYR+YEGNRRKYL
Subject   3817  PIRTHLPLSEKLNELIPFDLKAKEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYL  4083

Range 2: 3484 to 3750 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(408) 0.0 81/89(91%) 0/89(0%) Plus/Plus
Query        1  EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS  267
                EDEDVMVAFTRSRGEIAI+VDKKLKEVLLRTSKSELLRKIL+GET+RRS+II LVKKHIPEA+++FEENRLASNVDYEERLAGDPYLKS
Subject   3484  EDEDVMVAFTRSRGEIAISVDKKLKEVLLRTSKSELLRKILSGETYRRSSIIALVKKHIPEALVVFEENRLASNVDYEERLAGDPYLKS  3750

Range 3: 3486 to 3761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 73/92(79%) 0/92(0%) Minus/Minus
Query        3  KDNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS  278
                +DN D R*GSPA+LSS*STLLARRFSSN   ASG+CFFTS +M DLL VSP RIFR+SSLLDVL++TSF+FLSTL+AISP DLVKATITSSS
Subject   3486  RDNRDLR*GSPASLSS*STLLARRFSSNTTKASGICFFTSAMMLDLLYVSPLRIFRRSSLLDVLNSTSFSFLSTLMAISPRDLVKATITSSS  3761

Range 4: 3831 to 4031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 56/67(84%) 0/67(0%) Minus/Minus
Query      348  TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRAR  548
                TDIMKVAVSS+VCLRY ALW+IGLAPHCP PSSSICSVRPASVYCS SS AFKSNG NS SFSL+ +
Subject   3831  TDIMKVAVSSDVCLRYKALWVIGLAPHCPYPSSSICSVRPASVYCSLSSFAFKSNGINSFSFSLKGK  4031

Range 5: 3838 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 38/82(46%) 0/82(0%) Minus/Minus
Query      355  EILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLLTE  600
                ++LSPVP I S+P    +RHHE  CV+  +P +  L+ H V  PLP+ LLV LL  P +SVLL++ L L ++  QLI+LL +
Subject   3838  KVLSPVPFIASIPQTFLHRHHEGCCVI*CMP*IQSLVGHRVGPPLPVPLLVYLLSAPSLSVLLSVFLCLQIKRYQLIQLLAQ  4083

Range 6: 3485 to 3781 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 50/99(51%) 0/99(0%) Minus/Minus
Query        2  LLRCLRTRITVTSDRDLQPISPRNQHCLPGGFPRI*LQPPECASLRA**CLIF*TSLRSGSSVKARSWMSSVTPLSISCPH*LRSLPWI**RLPSHPRP  298
                L RC R  I  T  R L P SPRN H   GGFP+   +    ASLR  *C IF  S R  SSV A SW S + PLS+  PH* RS    **R P HP P
Subject   3485  LPRCPRKGIIET*GRGLLPASPRNPHYSLGGFPQTQPRLQGYASLRVR*CWIFCMSRRLESSVGAHSWTSLIAPLSVFYPH*WRSPLET**RPPLHPHP  3781

Range 7: 3486 to 3758 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 45/91(49%) 0/91(0%) Plus/Plus
Query        3  GRGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI  275
                G GC+G LH*+   DR+ CG + ERG  +D+QE A TED +RRD+ KI+H+  RKEA+      + GKPP + C LRGE G R L +V++I
Subject   3486  G*GCNGGLH*VSRGDRH*CG*KTERGAIKDVQE*APTEDSKRRDIQKIQHHRTRKEAYP*SLGCV*GKPPSE*CGLRGEAGRRPLPQVSII  3758

Range 8: 3816 to 4079 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 37/88(42%) 0/88(0%) Plus/Plus
Query      333  ANEDPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGLWAMGR*PNEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL*GEQEKV  596
                A++D    + EA *V  +  +G+G   A+H*  A+ A+ RGG+ AMG  P++P G + +A+   HS+ HDV  +  +V KL* EQEKV
Subject   3816  ADKDSLTFEREAE*VDTV*FEGKGRQRAIH*GWAH*ADRRGGVRAMGGQPDDPQGFVSKAYIR*HSNLHDVCEETFEV*KL*REQEKV  4079

Range 9: 3484 to 3693 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 36/70(51%) 0/70(0%) Minus/Minus
Query        1  AVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILVL  210
                AVFL+++   R++LLYE D+  SS  L+  +LP*+L LG P *HLFQF +H + DL    SEG+H+IL+L
Subject   3484  AVFLKHNQGFRDMLLYECDDAGSSVCLAA*NLP*ELTLGRP**HLFQFFIHTNGDLPSRPSEGHHYILIL  3693

Range 10: 3845 to 4078 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 35/78(45%) 0/78(0%) Minus/Minus
Query      362  TFSCSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWPLSRMGPTH*AS  595
                TFSCS H+F T      TS*+ LC    A    P GS G  PIA +PPR  A  A+ QC A   P P ++   TH AS
Subject   3845  TFSCSLHSFYTSNVSSQTS*RLLCHLMYALDTKPCGSSGWPPIARTPPRLSAQCAQPQCIALCLPLPSNQTVSTHSAS  4078

Range 11: 3485 to 3628 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 29/48(60%) 0/48(0%) Plus/Plus
Query        2  RTRM*W*PSLDPGERSQSMWTRN*KRCY*GHPRASFYGRS*TERRLED  145
                R RM*W PSL    RS  +W +N*KRCY*G PR S YGR *  R  ED
Subject   3485  RMRM*WWPSLGLEGRSPLVWIKN*KRCY*GRPRVSSYGRF*AARHTED  3628

Range 12: 3845 to 4078 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 36/78(46%) 0/78(0%) Plus/Plus
Query      362  RSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGTGES  595
                RS MS     *R R+  S+TL  G  S+ TRR  GNG  T+*  R    G    TQ  S*C  ++ *G E M+GTGES
Subject   3845  RS*MS*YRLI*RQRKTESNTLRLGALSR*TRRGTGNGGPTR*PTRLCI*GIHQMTQQPS*CL*RNV*GIEAMKGTGES  4078

Range 13: 3686 to 3766 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 15/27(56%) 0/27(0%) Plus/Plus
Query      203  KTAWQAMLITRRDWLEIPI*SHCYPCT  283
                KTA + M ITRR W E P  S  YP T
Subject   3686  KTA*RVMWITRRGWQETPTSSLYYPFT  3766

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 13

Range 1: 3817 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.8 bits(444) 0.0 82/89(92%) 0/89(0%) Plus/Plus
Query      334  PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKYL  600
                P++THL LSEKLNEL PFDLKAKEDREQYT+AGRTEQIDEEGYGQWGANPM+HKALYLRHTSDDTATFMMSVKKRLRYR+YEGNRRKYL
Subject   3817  PIRTHLPLSEKLNELIPFDLKAKEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYL  4083

Range 2: 3487 to 3750 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(401) 0.0 80/88(91%) 0/88(0%) Plus/Plus
Query        4  DEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS  267
                DEDVMVAFTRSRGEIAI+VD+KLKEVLLRTSKSELLRKIL+GET+RRS+II LVKKHIPEA+I+FEENRLASNVDYEERLAGDPYLKS
Subject   3487  DEDVMVAFTRSRGEIAISVDRKLKEVLLRTSKSELLRKILSGETYRRSSIIALVKKHIPEALIVFEENRLASNVDYEERLAGDPYLKS  3750

Range 3: 3486 to 3761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 72/92(78%) 0/92(0%) Minus/Minus
Query        3  KDNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS  278
                +DN D R*GSPA+LSS*STLLA+RFSS  I ASGMCFFT  +M DLL VSP RIFR+SSLLDVL++TSF+FLSTL+AISP DLVKATITSSS
Subject   3486  RDNRDLR*GSPASLSS*STLLAKRFSSKTIKASGMCFFTRAMMLDLLYVSPLRIFRRSSLLDVLNSTSFSFLSTLMAISPRDLVKATITSSS  3761

Range 4: 3831 to 4031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 55/67(82%) 0/67(0%) Minus/Minus
Query      348  TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRAR  548
                TDIMKVAVSS+VCLRY ALW+IGLAPHCP PSSSICSVRPASVYCS SS AF+SNG NS SFSL  +
Subject   3831  TDIMKVAVSSDVCLRYRALWVIGLAPHCPYPSSSICSVRPASVYCSLSSFAFRSNGINSFSFSLNGK  4031

Range 5: 3489 to 3758 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 47/90(52%) 0/90(0%) Plus/Plus
Query        6  RGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI  275
                RGC+G L+*+   DR+QCGQE ERG  ED+QE A  EDP+RRD+ KI+H+ +R++AHS   + +RGKP  K   LRG+ G R L +V++I
Subject   3489  RGCNGGLY*VSRGDRHQCGQEAERGAIEDVQE*APPEDPQRRDIQKIQHHRSREKAHS*SLDCLRGKPLSK*RGLRGKAGRRPLPQVSII  3758

Range 6: 3816 to 4079 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 39/88(44%) 0/88(0%) Plus/Plus
Query      333  ANEDPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGLWAMGR*PNEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL*GEQEKV  596
                A++D    + EA *V  +  +G+GG  A+H*  A+  +  GG+  MG  P++P G+I QA+  R+ + HDVG +A KV KL*GE EKV
Subject   3816  ADKDSLTVKREAE*VDTV*SEGEGGQRAIH*GWAH*TDR*GGVRTMGGQPDDPQGSISQAYIRRYGNLHDVGEEASKV*KL*GE*EKV  4079

Range 7: 3844 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 39/80(49%) 0/80(0%) Minus/Minus
Query      361  EILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLL  600
                ++LSP+PLI S+P* L +RHHE   +V  +PE+* L+ H V  PL + LL+ L   P +SVLL++LL L ++  QLI+LL
Subject   3844  QVLSPIPLIASIP*TLLHRHHEGCRIV*CMPEI*SLVGHRVGPPLSVPLLIYLFSAPSLSVLLSVLLRLQIKRYQLIQLL  4083

Range 8: 3488 to 3781 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 51/98(52%) 0/98(0%) Minus/Minus
Query        5  LLRCLRTRITVTSDRDLQPISPRNQHCLPGGFPRI*LQPPECASLRA**CLIF*TSLRSGSSVKARSWMSSVTPLSISCPH*LRSLPWI**RLPSHPR  298
                L RCL   I  T  R L P  PR+   L  GFPR   +  ECA  R  *C IF  S R GSS  A SW SS+ PLS SCPH* RS    **R P HPR
Subject   3488  LPRCLHRGIIET*GRGLLPAFPRSPRYLLSGFPRRQSRLQECAFSRER*CWIFCMSRR*GSSGGAHSWTSSIAPLSASCPH*WRSPLET**RPPLHPR  3781

Range 9: 3484 to 3708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 39/75(52%) 0/75(0%) Minus/Minus
Query        1  NIACQAVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILVL  225
                ++ C AVFLE +   RNVL +E D+  SS  L+ +DLP +L LG PQ*HLFQ  VH D DL    S+G+H+ILV+
Subject   3484  HVTC*AVFLEDNQGFRNVLFHESDDAGSSVCLAAEDLPEELTLGRPQ*HLFQLPVHTDGDLPSRPSKGHHYILVV  3708

Range 10: 3845 to 4078 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 37/78(47%) 0/78(0%) Minus/Minus
Query      362  TFSCSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWPLSRMGPTH*AS  595
                TFS SPH+F TL A  PTS*+   R   A* I P GS G  PI  +PP      A+ QC A  PP P  +   TH AS
Subject   3845  TFSYSPHSFYTLDASSPTS*RLPYRLMYA*DIEPCGSSGWPPIVRTPPHLSVQCAQPQCIALCPPSPSDQTVSTHSAS  4078

Range 11: 3488 to 3628 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/47(60%) 0/47(0%) Plus/Plus
Query        5  TRM*W*PSLDPGERSQSMWTRN*KRCY*GHPRASFYGRS*TERRLED  145
                TRM*W P L    RS S+WT +*KRCY*G PR S  GRS   R  ED
Subject   3488  TRM*WWPLLGLEGRSPSVWTGS*KRCY*GRPRVSSSGRSSAARHTED  3628

Range 12: 3845 to 4078 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 37/78(47%) 0/78(0%) Plus/Plus
Query      362  RSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGTGES  595
                RS MS     *R RR  S+TL  G  ++  RR   NG  T+*  R Y SG   T +  S*CR +S *G E MRG GES
Subject   3845  RS*MS*YRLI*RRRRTESNTLRLGALNR*MRRGTDNGGPTR*PTRLYISGIHQTIRQPS*CR*RSV*GIEAMRGIGES  4078

Range 13: 3686 to 3760 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 12/25(48%) 0/25(0%) Plus/Plus
Query      203  KTAWQAMLITRRDWLEIPI*SHCYP  277
                KTA Q    TR+ W E P  S  YP
Subject   3686  KTA*QVTWTTRKGWQETPTSSLYYP  3760

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 13

Range 1: 3803 to 4069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.0 bits(440) 0.0 82/89(92%) 0/89(0%) Plus/Plus
Query      334  PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKYL  600
                P++THL LSEKLNEL PFDLKAKEDREQYTDAGRTEQIDEEGY QW ANPMSHKALYLRHTSDDTATFMMSVKKRLRYR+YEGNRRKYL
Subject   3803  PIRTHLPLSEKLNELVPFDLKAKEDREQYTDAGRTEQIDEEGYAQWSANPMSHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYL  4069

Range 2: 3470 to 3736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.6 bits(404) 0.0 81/89(91%) 0/89(0%) Plus/Plus
Query        1  EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS  267
                EDEDVMVAFTRSRGEIAI+VD+KLKE+LLRTSKSELL+KIL+GET+RRS+II LVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS
Subject   3470  EDEDVMVAFTRSRGEIAIDVDRKLKEMLLRTSKSELLKKILSGETYRRSSIIALVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS  3736

Range 3: 3472 to 3744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 73/91(80%) 0/91(0%) Minus/Minus
Query        3  DNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS  275
                D+SD R*GSPA+LSS*STLLA+RFSS M+TASGMCF TS +M DLL VSP RIF +SSLLDVLSN SF+F ST IAISPLDLVKATITSSS
Subject   3472  DSSDLR*GSPASLSS*STLLAKRFSSKMMTASGMCFLTSAMMLDLL*VSPLRIFFRSSLLDVLSNISFSFRSTSIAISPLDLVKATITSSS  3744

Range 4: 3811 to 4017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 54/69(78%) 0/69(0%) Minus/Minus
Query      342  TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRARWV  548
                TDIMKVAVSS+VC RY ALWLIGLA HC  PSSSICSVRPASVYCSRSS AF+SNG +S SFSL+ + V
Subject   3811  TDIMKVAVSSDVCRRYKALWLIGLALHCAYPSSSICSVRPASVYCSRSSFAFRSNGTSSFSFSLKGKCV  4017

Range 5: 3794 to 4069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 39/92(42%) 0/92(0%) Minus/Minus
Query      325  EILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLLTEGQMGLHWLQC  600
                E+   V  + S+P    + HHES  ++  VPEV   +AH V APL +   V L R  GISVLLT+L    ++W QL++LL +GQM    L+C
Subject   3794  EVFPSVTFVASIPQTFLHGHHESSRIIGCVPEVQGFVAHRVGAPLRVPFFVYLFRATGISVLLTVLFRFQIKWDQLVQLLAQGQMRPDGLKC  4069

Range 6: 3473 to 3694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 40/74(54%) 0/74(0%) Minus/Minus
Query        4  NIACQAVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILV  225
                +I CQA+F E D    +VLL +RD+  SS  L+ QDL *+  L C Q*HLF F +HIDCDL   S EG+HHI V
Subject   3473  HITCQAIFFEDDDCFGDVLLDKRDDAGSSVSLATQDLL*EFTLRCSQ*HLF*FPIHIDCDLPSRSCEGHHHIFV  3694

Range 7: 3475 to 3744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 45/90(50%) 0/90(0%) Plus/Plus
Query        6  RGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI  275
                R CDG LH I   DRN+CG E +R VTE+I E    EDPE RD+ KI+H+ A +EAH    +H+R K  GK C LRGE     L ++T I
Subject   3475  RRCDGGLHKI*RGDRNRCGSETKRDVTENI*E*TPKEDPEWRDLQKIQHHRACQEAHPRSSHHLRRKSLGK*CGLRGEARR*PLPQITAI  3744

Range 8: 3816 to 4055 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 35/80(44%) 0/80(0%) Plus/Plus
Query      347  IWPSVRSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGT  586
                I P  RS  SW H  *+ +R VSSTLMP  R++ T++   +GA T *A +  TSGT    + LS*C  ++ *G E  + T
Subject   3816  ICP*ARS*TSWSHLI*KRKRTVSSTLMPVARNR*TKKGTRSGAPTL*ATKPCTSGTHPMIRLLS*CP*RNV*GIEATKVT  4055

Range 9: 3802 to 4044 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 32/81(40%) 0/81(0%) Plus/Plus
Query      333  ANEDPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGLWAMGR*PNEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL  575
                A++D    + EA   GPI  + + G *AVH*CR++G + R  + A+ R P EP   +P AH   + +FHDV  +  +V KL
Subject   3802  AHQDAFALEREAERAGPI*SESERGP*AVH*CRSHGTDRRRRVRAVERQPYEPQSLVPPAHIR*YGYFHDVREETSEV*KL  4044

Range 10: 3471 to 3614 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 28/48(58%) 0/48(0%) Plus/Plus
Query        2  RTRM*W*PSLDPGERSQSMWTRN*KRCY*GHPRASFYGRS*TERRLED  145
                +T+M*W PS D   RSQSMW  N*KRCY* H R +   RS*  R  ED
Subject   3471  KTKM*WWPSQDLEGRSQSMWIGN*KRCY*EHLRVNS*RRS*VARLTED  3614

Range 11: 3672 to 3752 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 14/27(52%) 0/27(0%) Plus/Plus
Query      203  KTAWQAMLITRRDWLEIPI*SHCYPCT  283
                K AWQ M ITRR     P  +HCY  T
Subject   3672  KIAWQVMWITRRGSPVTPTSNHCYRFT  3752

Range 12: 3474 to 3767 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 49/98(50%) 0/98(0%) Minus/Minus
Query        5  LLRCLRTRITVTSDRDLQPISPRNQHCLPGGFPRI*LQPPECASLRA**CLIF*TSLRSGSSVKARSWMSSVTPLSISCPH*LRSLPWI**RLPSHPR  298
                LL+C R  I V   R  +  SPRN H LP  F R *     CAS +A *C IF  S  SGSS+   S M SVT L +S PH LRS   I *R PSH R
Subject   3474  LLQCPRKAIAVI*GRGHRRASPRNPHYLPSDFLRR**LLRGCAS*QAR*CWIFCKSRHSGSSLGVHS*MFSVTSLLVSDPHRLRSPL*IL*RPPSHLR  3767

Range 13: 3831 to 4055 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 30/75(40%) 0/75(0%) Minus/Minus
Query      362  CSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWPLSRMGPTH*AS  586
                C   +F T      TS*K    + CA G    GS G R  A +  R   P  RHQCTAH P     +MGP   AS
Subject   3831  CYLRSFYTSDVSSRTS*K*PYHRMCAGGTRLCGS*GWRSTARTLLRLSVPCDRHQCTAHGPLSLSDQMGPARSAS  4055

Grapevine virus A isolate GTR1SD 1, complete genome

Sequence ID: DQ855081.2 Length: 7352 Number of Matches: 8

Range 1: 3808 to 4071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(408) 0.0 78/88(89%) 0/88(0%) Plus/Plus
Query      334  PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY  597
                P+KTHLALSEKLNELAPFDLKAKEDREQYT+AGRTEQIDEEGY    ANPM+HKALYLRHTSDDTATFMMSVKKRLR+RN+E NRRKY
Subject   3808  PVKTHLALSEKLNELAPFDLKAKEDREQYTEAGRTEQIDEEGYKGEDANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNFEANRRKY  4071

Range 2: 3475 to 3741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.9 bits(321) 0.0 62/89(70%) 0/89(0%) Plus/Plus
Query        1  EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS  267
                EDEDVMVA TRSRGEI I+    LK+ L+ T+KS LLRK+L GET+RRS I+ +VKKHIPE  ++FEE+RLA NVDYE RLAGDPYLKS
Subject   3475  EDEDVMVALTRSRGEIGIHASPALKKSLISTAKSTLLRKVLKGETYRRSEIVAMVKKHIPEVTVMFEESRLAENVDYEARLAGDPYLKS  3741

Range 3: 3477 to 3755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 53/93(57%) 0/93(0%) Minus/Minus
Query        3  YKDNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS  281
                YK++SD R GSPA+L+S*ST  A   SSN+   SGMCF T   + DLL VSP   FRKS LL V     F      I ISPLDLVKAT+TSSS
Subject   3477  YKESSDLRYGSPASLAS*STFSANLLSSNITVTSGMCFLTIATISDLL*VSPLSTFRKSVLLAVDIKDFFKAGLA*IPISPLDLVKATMTSSS  3755

Range 4: 3813 to 4022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 52/70(74%) 0/70(0%) Minus/Minus
Query      339  TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRARWVF  548
                TDIMKVAVSS+VCL+  ALW+IGLA     PSSSICSVRPASVYCS SSLA +SNGA+S +FSL AR VF
Subject   3813  TDIMKVAVSSDVCLK*RALWVIGLASSPLYPSSSICSVRPASVYCSLSSLALRSNGASSFNFSLSAR*VF  4022

Range 5: 3475 to 3699 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 27/75(36%) 0/75(0%) Minus/Minus
Query        1  NIACQAVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILVL  225
                ++  Q  FLE+   LR+VL   RD++ SS   S + L  + ALGC    L      ++ D SP S +G H +L+L
Subject   3475  HVLSQPAFLEHHRDLRDVLFDHRDDLGSSVGFSFEHLSQECALGCRYQRLL*SWASMNSDFSP*SGQGDHDVLIL  3699

Range 6: 3869 to 4069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 26/67(39%) 0/67(0%) Minus/Minus
Query      395  TFSCSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWP  595
                T  C P NF    +F* TS*KW C   C       GS G  P+  +P  + A +A+ QC A    WP
Subject   3869  TSFCWPRNF*ISISF*LTS*KWPCHLMCVSSKGLCGS*GWHPLLCTPLHRSALFAQPQCIAPCLLWP  4069

Range 7: 3570 to 3755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 21/62(34%) 0/62(0%) Plus/Plus
Query       96  QERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVILV  281
                QE    +  +RR++ KI+     ++AH GG   +RGK  G +  LRG   W S+ ++  +LV
Subject   3570  QEHTLAKGAQRRNLQKIRDRRDGQKAHPGGHGDVRGKQVG*ERGLRG*TRW*SIPQIATLLV  3755

Range 8: 3830 to 4060 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 29/77(38%) 0/77(0%) Plus/Plus
Query      356  SVRSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGT  586
                SV++ MS    T RP++  S+TL  G +S+  +R       T *  + +T  T   T+PLS*C+ K  * +EI R T
Subject   3830  SVKN*MS*HRLTSRPKKTGSNTLRLGEQSRSMKRGTKERMPTL*PTKPFT*DTHQMTRPLS*CQSKRD*DSEISRPT  4060

Grapevine virus A, complete genome

Sequence ID: AY244516.1 Length: 7378 Number of Matches: 10

Range 1: 3804 to 4067 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.4 bits(399) 0.0 76/88(86%) 0/88(0%) Plus/Plus
Query      334  PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY  597
                P+KTHLALSEK+NELAPF+LKAKE REQYTDAGRTEQIDEEGY    ANPM+HKALYLRHTSDDTATFMMSV+KRLR+RNYE NRRKY
Subject   3804  PVKTHLALSEKMNELAPFELKAKEYREQYTDAGRTEQIDEEGYSGEEANPMTHKALYLRHTSDDTATFMMSVRKRLRFRNYEANRRKY  4067

Range 2: 3471 to 3737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.3 bits(322) 0.0 61/89(69%) 0/89(0%) Plus/Plus
Query        1  EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS  267
                EDEDVMVA TRSRGEI INV   LK+ L+ ++KS LLRK+L GET+RRS I+ + +KHIPE  ++FEE+RLA NVDYE RLAGDPYLKS
Subject   3471  EDEDVMVALTRSRGEIGINVTNALKKTLIASAKSTLLRKVLKGETYRRSEIVAMARKHIPEVTVLFEESRLAENVDYEARLAGDPYLKS  3737

Range 3: 3812 to 4018 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 51/69(74%) 0/69(0%) Minus/Minus
Query      342  TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRARWV  548
                TDI+ VAVSSEVCLRY ALW+IGLA     PSSSICSV PASVYCS  SLAF S GA+S  FSL ARWV
Subject   3812  TDIINVAVSSEVCLRYKALWVIGLASSPLYPSSSICSVLPASVYCSLYSLAFNSKGASSFIFSLNARWV  4018

Range 4: 3473 to 3745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 43/91(47%) 0/91(0%) Minus/Minus
Query        3  DNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS  275
                ++SDF+ GSPANL+S*ST  A   SS     SG+C      + + L VSP   F  S L  +  N   + L T + ISPLDLV+ATITSSS
Subject   3473  ESSDFKYGSPANLAS*STFSASLLSSKRTVTSGICLRAMATISERLYVSPLSTFLSSVLFALAINVFLSALVTFMPISPLDLVRATITSSS  3745

Range 5: 3953 to 4066 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 17/38(45%) 0/38(0%) Plus/Plus
Query      483  NEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL*GEQEKV  596
                ++P G +P+ H * H H +DV  +A  +QKL*G+Q++V
Subject   3953  DDPQGFVPKTHL**HCHVYDVCKEAIALQKL*GKQKEV  4066

Range 6: 3473 to 3745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 23/91(25%) 0/91(0%) Plus/Plus
Query        3  GRGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI  275
                G GCDG    I+  +R++  Q  +  V  + ++ A  E  +  D+*   +     +A++     +RG+   ++C L   + W S+ EVT +
Subject   3473  G*GCDGGPDKIKRGNRHKRHQCTQEDVDRERKKYAAQEGTQGGDI*AF*NRCHGPQAYTRSHRSLRGE*ASRKCGL*S*VSW*SILEVTAL  3745

Range 7: 3812 to 3931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 17/40(42%) 0/40(0%) Plus/Plus
Query      342  DPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGL  461
                +PS  +*E    GP R++GQ    AVH C    A+ RGG+
Subject   3812  NPSRIE*EDERTGPFRIEGQRVQRAVHGCWKD*ADRRGGV  3931

Range 8: 3798 to 4067 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 38/90(42%) 0/90(0%) Minus/Minus
Query      328  ILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLLTEGQMGLHWLQ  597
                +L  V LI+S   +L  RHH+ G V+R V  V  L+ H +     I LLV LL    I VLL++L GL  E GQ + LLT+ +MG +  Q
Subject   3798  VLPSVCLIVSEAQSLPYRHHKRGSVIRGVS*VQSLVGHRIGLFPAIPLLVYLLSPSSIRVLLSVLFGLQFERGQFVHLLTQCEMGFNRFQ  4067

Range 9: 3955 to 4065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 17/37(46%) 0/37(0%) Minus/Minus
Query      485  TFSCSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGS  595
                T  C PH+F +  A   TS* W C Q+C  G  P GS
Subject   3955  TSFCLPHSF*SAIASLQTS*TWQCHQRCVLGTKPCGS  4065

Range 10: 3814 to 3933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 17/40(42%) 0/40(0%) Minus/Minus
Query      344  HSPPRQFAPYARHQCTAHDPPWPLSRMGPTH*ASH*GPDG  463
                ++PPR  A   +H CTA    WP  R GP   +SH   DG
Subject   3814  YTPPRLSAQSFQHPCTALCTLWPSIRKGPVRSSSHSMRDG  3933

Nucleotide Sequence (454 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
46
92
138
184
230
276
322
368
414
454

Descriptions

Alignments

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 7

Range 1: 580 to 1032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
355.3 bits(769) 0.0 140/151(93%) 0/151(0%) Minus/Plus
Query        2  HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT  454
                HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGC KT+DS+SRSWTIT+LQTVGAH +FSAVLGSFLT DSYKYDNFT+INPNDILRGRRGCKPLYLRARMIRPT
Subject    580  HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCRKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMIRPT  1032

Range 2: 582 to 1031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.2 bits(568) 0.0 119/150(79%) 0/150(0%) Plus/Minus
Query        3  VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS  452
                VG IILARKY GLHPLRPL +S GLM VKLSYLYES V+KLPRTAL   CAPTV S VIVQLLD ES VL HPS+QGFTG VYAPSALPSGY V+ PS +S V*ASGN+L   PASTSAGYTML TTLFACS DPRNLCISSKLQY TSS
Subject    582  VGLIILARKYKGLHPLRPLSMSFGLMTVKLSYLYESSVRKLPRTALKMWCAPTVCSFVIVQLLDFESIVLRHPSSQGFTGCVYAPSALPSGYQVSLPSRRSNV*ASGNRLWLKPASTSAGYTML*TTLFACSSDPRNLCISSKLQYWTSS  1031

Range 3: 580 to 1026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 84/149(56%) 0/149(0%) Plus/Minus
Query        8  ADHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV  454
                +DH  + I RLAPSSPP+ +IRVDD EVVI V*+  *E TQDCTE  + P GL+ CD PA    + SLAAP *PRV+ L VRP C  IWIP  PP  Q++ + L E TL E  ++L WVHNA+ H LC+  RP KPLH I  P+L+LVV
Subject    580  SDHPGS*IQRLAPSSPPEYVIRVDDGEVVILV*VLC*EATQDCTEDVVRPDGLQLCDSPAPRL*VYSLAAP**PRVYRLCVRPFCLTIWIPSKPPISQIKRVSLWEQTLVETSVHLCWVHNAIDHPLCMLERP*KPLHLI*APILDLVV  1026

Range 4: 753 to 1022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 53/90(59%) 0/90(0%) Minus/Plus
Query       12  MVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKND  281
                +VSRW  R GVH+T +PL TRV QD R ++ +LD HKA NR G   +QCSPG*  NRG IQ+*QLH HQP *+++GAKRVQA +F  ++D
Subject    753  LVSRW*GRRGVHTTGKPLATRVPQDYRLKV*ELDYHKAANRRGAPHLQCSPG*LPNRGLIQV*QLHRHQPE*HTQGAKRVQAFVFTSQDD  1022

Range 5: 582 to 725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 25/48(52%) 0/48(0%) Minus/Plus
Query      309  RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLY  452
                RRG ILE  *+AKVS V+R  KE G+ HCVPS G    + + +P GL+
Subject    582  RRGPILELR*DAKVSRVARACKEGGL*HCVPSRGGRWFQPKSVPRGLH  725

Range 6: 581 to 997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.1 bits(319) 0.0 77/139(55%) 0/139(0%) Minus/Plus
Query       37  TTRFNTGVWMKCKGFWGL*NTQREWYTALCTQRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMIF*GGEEGAS  453
                TTR N G  M+CKGF G  + QR W  ALCTQ+R    S +V S R        GG  GIQM +Q+GRT N+*TLGY GAARL      AG SQ  KP G  + SVQSWV S*   HT+MTTS SST M + GGEEGAS
Subject    581  TTRSNIGA*MRCKGF*GRSSMQRGWSIALCTQQRWTLVSTKVCSQRLTRLICEMGGLLGIQMVRQKGRTHNR*TLGY*GAARL*TQSLGAGLSQSCKPSGRTTSSVQSWVAS*QRTHTSMTTSPSSTRMTYSGGEEGAS  997

Range 7: 581 to 1006 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 71/142(50%) 0/142(0%) Plus/Minus
Query       28  NITACTLFAPSEYH*G**L*SCHICMNPRLRNYPGLH*TRDVPPRFGAL*LSSFWIWNRQSCCTRVTKGSLVECTPPLLCHLDTMLTALPSSRKYRPQGINSDRTPHLPPLGTQCCIPLSLRVLETPETFAFHPNSSIEPRR  453
                N  ACTLFAP   H G** *SCH CM+P L +YPGLH*    P RF AL* SS    +  SC T V KG  V CTP L  HLDT   +  + +  +P G +       P LGTQC  P SL    T ETFA H +S+I PRR
Subject    581  NTKACTLFAP*VCHSG**R*SCHTCMSPLLGSYPGLH*RCGAPRRFAAL**SSS*TLSL*SCGTLVAKGLPVVCTPLLPYHLDTK*ASHLADQTCKPLGTDFG*NQRPPLLGTQCYRPPSLHARATLETFASHLSSNIGPRR  1006

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 7

Range 1: 580 to 1032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
355.3 bits(769) 0.0 140/151(93%) 0/151(0%) Minus/Plus
Query        2  HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT  454
                HDEVQYWSLDEMQRFLGSLEHA RVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGCSKT+DS+SRSWTIT+LQTVGAH +FSAVLGSFLT DSYKYDNFT+INPNDILRGRRGCKPLYLRARMIRPT
Subject    580  HDEVQYWSLDEMQRFLGSLEHANRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMIRPT  1032

Range 2: 582 to 1031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 120/150(80%) 0/150(0%) Plus/Minus
Query        3  VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS  452
                VG IILARKY GLHPLRPL IS GL+ VKLSYLYES V+KLPRTAL   CAPTV S V+VQLLD ES VLLHPS+QGFTG V APSALPSGY V+ PS KS V*ASGN+L   PASTSAGYTMLYTTL ACSRDP+NLCISSKLQY*TSS
Subject    582  VGLIILARKYKGLHPLRPLSISFGLITVKLSYLYESSVRKLPRTALKIWCAPTVCSFVMVQLLDFESIVLLHPSSQGFTGCV*APSALPSGYQVSLPSRKSNV*ASGNRLWLKPASTSAGYTMLYTTLLACSRDPKNLCISSKLQY*TSS  1031

Range 3: 580 to 1029 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.0 bits(356) 0.0 77/150(51%) 0/150(0%) Plus/Minus
Query        5  WADHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV  454
                W+DH  +Q+ RLAP S P+ I+RVD  EVV+ V +  *E TQ+CTE  + P+GL+ CD PAS   + SLAAP *PR++ L V P C  IWIP  PP  Q++ + L + TL E  I+L  VHNA++H + V  RP K LH I  PVLNLVV
Subject    580  WSDHPGSQVQRLAPPSSPEYIVRVDHGEVVVLVRVLC*EATQNCTEDMVRPNGLQLCDGPAS*L*VYSLAAP**PRIYRLCVGPFCLTIWIPSKPPIPQIKRVSLWKQTLVETSIHLCRVHNAIHHPVSVLERP*KSLHLI*APVLNLVV  1029

Range 4: 582 to 1031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 71/150(47%) 0/150(0%) Minus/Plus
Query        3  RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKNDPPN  452
                RRGSILE  *+AK+  VSR R + G+ HCVP  G C  + + +  GL+    G    +VSRW  R G+H+T + L TRVQQD R +++KLD+HKA +R G   +QCS G*  NRG +Q+ QLH  QP  Y++G K VQA + A ++D  N
Subject    582  RRGSILELR*DAKIFRVSRAR*QGGV*HCVPCRGGCWFQPKSVSRGLHV*FAGWEAYLVSRW*GRRGLHTTGKSLATRVQQDYRLKVKKLDHHKAADRWGAPYLQCSSG*LPNRGLVQVRQLHRDQPERYTQGTKGVQAFVLASQDDQTN  1031

Range 5: 743 to 1030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 49/96(51%) 0/96(0%) Minus/Plus
Query        4  GG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMIF*GGEEGASRYICVQE*SAQ  291
                GG  GIQM +Q+G T N+* LGY GAARL     EAG SQ  +P G    SVQ WV S*    T+ TTS  ST  I+ G E GAS   C   *S Q
Subject    743  GGLLGIQMVRQKGPTHNR*ILGY*GAARL*TQSQEAGPSQSCRPLGRTISSVQFWVAS*QRTRTSTTTSP*STRTIYSGDEGGASLCTCEPG*SDQ  1030

Range 6: 581 to 706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 23/42(55%) 0/42(0%) Minus/Plus
Query      328  TTRFNTGVWMKCKGFWGL*NTQREWYTALCTQRR*MRGSVRV  453
                TTRFNTG  M+CK F GL +T   W  ALCT +R M  S +V
Subject    581  TTRFNTGA*MRCKDF*GLSSTLTGWCIALCTLQRWMLVSTKV  706

Range 7: 581 to 1009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 64/143(45%) 0/143(0%) Plus/Minus
Query       25  ANITACTLFAPSEYH*G**L*SCHICMNPRLRNYPGLH*TRDVPPRFGAL*LSSFWIWNRQSCCTRVTKGSLVECTPPLLCHLDTMLTALPSSRKYRPQGINSDRTPHLPPLGTQCCIPLSLRVLETPETFAFHPNSSIEPRR  453
                A+  ACT F P  Y  G*  *SC  C +P L +YP LH*    P R  AL* SSF   +  SCCT V K   V C P L  HLDT   + P+++  +P   +     H P  GTQC  P   R  ET + FA H +SSIEPRR
Subject    581  ASTKACTPFVP*VYRSG*SR*SCRTCTSPLLGSYPELH*RYGAPQRSAAL*WSSFLTLSL*SCCTLVAKDLPVVCRPLLPYHLDTK*ASHPANQTCKPLETDFG*NQHPPLQGTQCYTPPC*RARETLKIFASHLSSSIEPRR  1009

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 6

Range 1: 566 to 1018 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
355.3 bits(769) 0.0 142/151(94%) 0/151(0%) Minus/Plus
Query        2  HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT  454
                HDEVQYWSLDEMQRFLGSL+H KRVVYSIVYPAEVDAGF QSLFPEAYTFDLK+GRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDS SRSWTIT+LQTVGAH +FSAVLGSFLT DSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT
Subject    566  HDEVQYWSLDEMQRFLGSLKHVKRVVYSIVYPAEVDAGFSQSLFPEAYTFDLKDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT  1018

Range 2: 568 to 1017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
275.1 bits(594) 0.0 121/150(81%) 0/150(0%) Plus/Minus
Query        3  VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS  452
                VGRIILA +Y GLHPLRPL +S GLM+VKLSYL ES V+KLP+TAL   CAPTV + VIVQLLD ESTVLLHPSNQGFTG VYAPSALPSGYHVN PSF+SKV*ASGN+L*  PASTSAGYTMLYTTLF C  +PRNLCISSKLQY TSS
Subject    568  VGRIILALRYKGLHPLRPLSMSFGLMMVKLSYL*ESSVRKLPKTALKMWCAPTVCNFVIVQLLDSESTVLLHPSNQGFTGCVYAPSALPSGYHVNLPSFRSKV*ASGNRL*LKPASTSAGYTMLYTTLFTCLSEPRNLCISSKLQYWTSS  1017

Range 3: 568 to 1017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.0 bits(369) 0.0 75/150(50%) 0/150(0%) Minus/Plus
Query        3  RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKNDPPN  452
                R G ILE G*NAK+SG+++T ++  +QHC+P  G    +S+ IP  L+FR E R VN+V RW SRGG+H+  EPLVTRV  +CR  + +LD+HK  N GG   +QC  G*  +RGF+Q+*QLH+HQP  +++G+K V A +   ++DPPN
Subject    568  R*GPILELG*NAKISGLAQTCEKGCVQHCIPCRGGRWFQSKPIPRSLHFRSERREVNVVPRW*SRGGIHAAGEPLVTRV**NCRL*V*ELDDHKVANSGGAPHLQCRFG*LPDRGFLQV*QLHHHQPERHTQGSKGV*AFVSQSQDDPPN  1017

Range 4: 566 to 1015 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.6 bits(366) 0.0 79/150(53%) 0/150(0%) Plus/Minus
Query        5  WADHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV  454
                WADH  ++I RL P S P+ ++RVDD EVVI V I   E TQ+ TE  + PH L+ CD PA    + S   P *PRVH L V PLCF IW+P *PP  Q+ES+G  E* LTE  ++L  V+NAV++   +F R QK LHFIQ PVL+L+V
Subject    566  WADHPGSEIQRLTPPSTPEYVVRVDDGEVVILVRILCQEATQNGTEDVVRPHCLQLCDRPAPRLRVYSFTTP**PRVHRLRVCPLCFTIWVPR*PPVFQIESVGFWE*ALTETSVHLCRVYNAVHNPFHMFERAQKSLHFIQAPVLDLIV  1015

Range 5: 567 to 1016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 75/150(50%) 0/150(0%) Minus/Plus
Query        4  TTRFNTGVWMKCKGFWGL*NTQREWYTALCTQRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMIF*GGEEGASRYICVQE*SAQ  453
                T R NTG WMKCK FW   N  +   TAL T +R    SV+ YS +P LS *+ GG* G QM KQRG T ++*TLGY G  +L      AG+SQ  K WG  + SV  WV S*  I T+MTTS SST   + G E G S  I    *SAQ
Subject    567  TMRSNTGAWMKCKDFWARSNM*KGLCTALYTLQRWTLVSVKAYSQKPTLSI*KTGG*RGTQMVKQRGHTRSR*TLGY*GVVKL*TLSLGAGRSQSCKQWGRTTSSVPFWVAS*QRILTSMTTSPSSTRTTYSGVEGGVSLCISEPG*SAQ  1016

Range 6: 567 to 1016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.5 bits(261) 0.0 71/150(47%) 0/150(0%) Plus/Minus
Query        4  LGGSFLHANITACTLFAPSEYH*G**L*SCHICMNPRLRNYPGLH*TRDVPPRFGAL*LSSFWIWNRQSCCTRVTKGSLVECTPPLLCHLDTMLTALPSSRKYRPQGINSDRTPHLPPLGTQCCIPLSLRVLETPETFAFHPNSSIEPRR  453
                LGGS    +  A T F P     G** *SCH C NP   +YP  H*    PP F  L* SS    + Q   T VTKGS   C PPLL HL T LT+  S RK R  GI  D     P  G QCC      V  +PE FAFHP+SSI P R
Subject    567  LGGSSWL*DTKAYTPFDP*VCRSG**W*SCHTCKNPLSGSYPKRH*RCGAPPLFATL*SSSS*TQSLQFYYTLVTKGSPAACMPPLLYHLGTTLTSRLSDRKCRLLGIGFD*NQRPPLQGIQCCTQPFSHV*ASPEIFAFHPSSSIGPHR  1016

Grapevine virus A isolate GTR1SD 1, complete genome

Sequence ID: DQ855081.2 Length: 7352 Number of Matches: 6

Range 1: 583 to 1035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
325.0 bits(703) 0.0 126/151(83%) 0/151(0%) Minus/Plus
Query        2  HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT  454
                HDEVQYWSLDEMQRFLGSL    RVVYSI+YPAEV+AG+ QSLFPEAYTFDLKEGR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTIT+LQTVGAH LFSA+ GS+LT DSYKYDNFT+INPNDILRGRRG KPLYLRARMI+PT
Subject    583  HDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIRGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPT  1035

Range 2: 585 to 1034 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.6 bits(414) 0.0 96/150(64%) 0/150(0%) Plus/Minus
Query        3  VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS  452
                VG IILAR+YNGL PL P R+SLGL+ VKLSYL ES V+ LP  AL +  APTV S V+V  L LES VL H  + G  G VYAPSALPSGY +  PS +S V*ASG +L*  PASTSAG  MLYTTLF   + PR  CISSKLQY TSS
Subject    585  VGLIILARRYNGLLPLLPRRMSLGLITVKLSYL*ESSVR*LPLMALKRW*APTVCSFVMVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSKLQYWTSS  1034

Range 3: 649 to 1026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 49/126(39%) 0/126(0%) Plus/Minus
Query       11  DHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSL  388
                DHS  ++  LA     Q++I VD  EV+IFV I  * T  D TE+ +  + L+ C  P S  GID L A E PR+  L +  L F I +P  P  L+++ IG  E  L  P +Y  WV+ A+++S+
Subject    649  DHSGPEVQWLASPPSSQDVIGVDHSEVIIFVGILR*ITPPDGTEKVVSTNRLQLCYGPCSILGIDRLRASEKPRIDRLGICTLGFTIRVPNHPTLLKIKCIGFWEEALRVPCLYFCWVNYAIHYSI  1026

Range 4: 588 to 1025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 53/146(36%) 0/146(0%) Minus/Plus
Query       12  RGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKND  449
                RG ILE G*+A +S      K S + H +PS  R  V S+ +P  LY    G   ++V  W SRG ++ T + + +++  D RFQ   +D++KA N   +   QC  G   N GF+QI* LH  QP *+    +  QA++   +ND
Subject    588  RGPILELG*DAALSR*FEFSK*SSV*HNLPSRSRGRVLSKPLPRSLYI*S*GG*GDLVPGW*SRGCIYPTYQSVASQML*DDRFQG*SMDHNKAANGWCSPPFQCHQGELSNGGFLQI**LHCDQPQ*HPARKEGKQAIVPPGQND  1025

Range 5: 674 to 970 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 40/99(40%) 0/99(0%) Minus/Plus
Query       67  TQRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLM  363
                TQ++* +G+++  S +PI    R+ G* G +M K R    N    G+S A R SIP  E G  Q  K     + SV S  V *  I TNM TS  ST M
Subject    674  TQQK*RQGTLKASSQKPIHLILRRVG*FGTRMVKPRVHIPNLSIRGFSDALRRSIPRIEHGP*QSCKRLVLTTFSVPSGGVI*RRIPTNMITSL*STPM  970

Range 6: 587 to 628 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 8/14(57%) 0/14(0%) Minus/Plus
Query      409  TRFNTGVWMKCKGF  450
                TR N G WM+C  F
Subject    587  TRSNIGAWMRCSAF  628

Grapevine virus A isolate BMo32 1, complete genome

Sequence ID: DQ855087.2 Length: 7352 Number of Matches: 6

Range 1: 583 to 1035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
323.6 bits(700) 0.0 125/151(83%) 0/151(0%) Minus/Plus
Query        2  HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT  454
                HDEVQYWSLDEMQRFLGSL    RVVYSI+YPAEV+AG+ QSLFPEAYTFDLK+GR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTIT+LQTVGAH LFSA+ GS+LT DSYKYDNFT+INPNDILRGRRG KPLYLRARMI+PT
Subject    583  HDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKDGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIKGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPT  1035

Range 2: 585 to 1034 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 97/150(65%) 0/150(0%) Plus/Minus
Query        3  VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS  452
                VG IILAR+YNGL PL P RISLGL+ VKLSYL ES V+ LP  AL +  APTV S VIV  L LES VL H  + G  G VYAPSALPSGY +  PS +S V*ASG +L*  PASTSAG  MLYTTLF   + PR  CISS+LQY TSS
Subject    585  VGLIILARRYNGLLPLLPRRISLGLITVKLSYL*ESSVR*LPLMALKR**APTVCSFVIVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSRLQYWTSS  1034

Range 3: 583 to 1026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 60/148(41%) 0/148(0%) Plus/Minus
Query       11  DHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV  454
                DHS  Q+  LA     Q+II VD  EV+IF+ I  * T  D T++ M  + L+ C  P S  G+D   A E P V  L V  LCF IW+P  P  L+++ IG  E  L  P +Y  W++ A+++S+   *   K LH +Q P+L+LVV
Subject    583  DHSGPQVQWLASPPSSQDIIGVDHSEVIIFIRIFC*ITPLDGTKKVMSTNRLQLCYSPCSILGVDCFRASEKPWVDRLGVCTLCFTIWVPNHPAILKIKCIGFWEEALRVPCLYFCWINYAIHYSIY*I*TT*KALHLVQAPILDLVV  1026

Range 4: 585 to 1025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 54/147(37%) 0/147(0%) Minus/Plus
Query       12  RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKND  452
                RRG ILE G +A +S   +  K S + H + S  R  V S+ +P  LY    G   ++V RW SRG +H T +P+ +++  + R Q   +D +KA N   +S   C  G   NR F+ I* LH  QP *Y    +  QA++ A +ND
Subject    585  RRGPILEPGRDAALSR*FKFSK*SSV*HNLSSRSRGRVLSKPLPRSLYI*S*GWQGDLVPRW*SRGCIHPTYQPMASQML*NNRLQG*SMDYNKAANGWCSSPF*CHQGELSNRRFL*I**LHCDQPQ*YPARKEGKQAIVPAGQND  1025

Range 5: 677 to 973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 41/99(41%) 0/99(0%) Minus/Plus
Query       64  QRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMI  360
                Q++* +G+++  S +PI    R  G* G QM KQR  T N  T G+S A + S P  E G  Q  K    I+  V S  V *  I  NM TS  ST MI
Subject    677  QQK*RQGTLKASSQKPIHLILRMAG*FGTQMVKQRVHTPNLSTHGFSDALKQSTPRIEHGL*QSCKRLVLITFLVPSRGVI*QKILINMITSL*STPMI  973

Range 6: 584 to 628 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/15(53%) 0/15(0%) Minus/Plus
Query      409  TTRFNTGVWMKCKGF  453
                TTR N G W +C  F
Subject    584  TTRSNIGAWTRCSAF  628

Nucleotide Sequence (367 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
367

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
271.9 1019.5 35% 2.522e-71 60% JX559641.1
271.0 1035.7 24% 4.691e-71 59% DQ787959.1
270.5 1051.3 28% 6.541e-71 51% DQ855088.1
244.4 653.7 29% 4.763e-63 41% KC962564.1
242.1 696.2 29% 2.297e-62 46% AF007415.2

Alignments

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 6

Range 1: 2783 to 3148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
271.9 bits(587) 0.0 111/122(91%) 0/122(0%) Plus/Plus
Query        2  VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS  367
                VLLGKYNKGKMHSA LEEP+EVLTSFGFAGSGKSHW QTIL+SC+VEKTL+ISPRKVLKDDWVGKISKKHKVVTFEVAF DDFGCKAIVIDEIGLLPPGY+DLVISVF P+TLVLLGDP QS
Subject   2783  VLLGKYNKGKMHSAELEEPVEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFRPSTLVLLGDPLQS  3148

Range 2: 2782 to 3138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 95/119(80%) 0/119(0%) Minus/Minus
Query        1  GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT  357
                GSPN+TRV+G KTE+TRS *PGGSNPISS+T+AL PKSS+ ATS VTTLCFFEIFPTQSS  TFLGL+ +VFSTSQL SMV  Q*LFPDPAKPKEVSTS GSS  AECI PLLYFP+RT
Subject   2782  GSPNRTRVLGRKTEITRSM*PGGSNPISSMTIALHPKSSMNATSNVTTLCFFEIFPTQSSFSTFLGLMISVFSTSQLRSMVWHQ*LFPDPAKPKEVSTSTGSSNSAECIFPLLYFPKRT  3138

Range 3: 2794 to 3138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 69/115(60%) 0/115(0%) Plus/Plus
Query       13  EVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYHSSFVR*P  357
                ++Q*R+DAFC  GGT+*GTDL WFRRVRKKSL  NHTPEL* *+N ++ SK+G++G*LGR+DLKEAQG ++   ++ *LW+QG S+R DR+A  RL  S  L L   HS  VR P
Subject   2794  KIQ*REDAFC*IGGTS*GTDLFWFRRVRKKSLVPNHTPEL*C*KNTNH*SKKGAKG*LGRKDLKEAQGCDVRGCIHG*LWVQGDSHR*DRIATPRLHRSCDLSLPSKHSGSVRGP  3138

Range 4: 2783 to 3145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 72/121(60%) 0/121(0%) Minus/Minus
Query        2  LRGVT*QN*SGRVKDRDDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEKN  364
                L+ V *QN S   +D D +I+VAG  Q  L+ +Y LA KVI + + + ++LVLL*DL DP+IL +L WT++*CF N TT EYGL PVTFSGPGETK GQYLNWFLQ  RMHL FIV  ++N
Subject   2783  LKRVP*QNQSAWTED*DHKIYVAGG*QSDLIDDYRLAPKVIHECNLERHNLVLL*DLSDPIIL*HLSWTND*CFFNITTPEYGLAPVTFSGPGETKRGQYLNWFLQFSRMHLPFIVFSQEN  3145

Range 5: 2796 to 3137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 71/114(62%) 0/114(0%) Plus/Plus
Query       15  STIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIWSSRSFTLPL*FC*VT  356
                +TIK RCIL  WRNQLRY*P LVSPGPEKVTG KPYS VV L+KH*  VQ R  RM GS RSQRSTR *  +    MTL AR *   R  C  PAT I  S+S    L FC* T
Subject   2796  NTIKGRCILLNWRNQLRY*PLLVSPGPEKVTGAKPYSGVVMLKKH*SLVQERC*RMIGSERSQRSTRL*RSRLHSWMTLGARR*SSMRSDCYPPAT*IL*SQSSVQALWFC*GT  3137

Range 6: 2799 to 3137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 71/113(63%) 0/113(0%) Minus/Minus
Query       18  GHLTKLEW*GERPR*PDPRSRVGATLSRL*LWPCSQSHQ*RRLQRLPPCAXXXXXXXXXXXXXXLD**LMFSQLHNSGVWFDSSDFFRTRRNQRRSVPQLVPPNWQNASCLYC  356
                G LT+ E    R R  D  SR  A  S  *L PC+QSH * + +   PCASLRS RP+HP  P LD**L+F Q HNSGVWF +SDFFRTRRNQ+RSVPQLVPP  QNAS LYC
Subject   2799  GPLTEPECLDGRLRSQDLCSRGVAIRSHR*LSPCTQSHP*MQPRTSQPCASLRSFRPNHPLAPFLD**LVFFQHHNSGVWFGTSDFFRTRRNQKRSVPQLVPPIQQNASSLYC  3137

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 7

Range 1: 2797 to 3162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
271.0 bits(585) 0.0 110/122(90%) 0/122(0%) Plus/Plus
Query        2  VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS  367
                VLLGKYNKGKMH+A L+EP EVLTSFGFAGSGKSHW QTIL+SC+VEKTL+ISPRKVLKDDWVGKISKKHKVVTFEVAF DDFGCKAIVIDEIGLLPPGY+DLVISVFHP+TLVLLGDP QS
Subject   2797  VLLGKYNKGKMHAAELDEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPSTLVLLGDPLQS  3162

Range 2: 2796 to 3152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(455) 0.0 93/119(78%) 0/119(0%) Minus/Minus
Query        1  GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT  357
                GSP+ T+V+G  TE+TRS *PGGS+PISS+TMAL PKSS+ ATSKVTTLCF EIFPTQSSL TFLGLI  VFSTSQL SMV* Q*LFPDPAKPKEV+TS+GSS  A CI PLLYFPR T
Subject   2796  GSPSSTKVLGWNTEITRSI*PGGSSPISSMTMALHPKSSINATSKVTTLCFLEIFPTQSSLSTFLGLIIKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRST  3152

Range 3: 2796 to 3146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 73/117(62%) 0/117(0%) Plus/Plus
Query        1  CSSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYHSSFVR  351
                C+S +VQ*R+DA    G TN*  D LWFRRVRKKSL SNHTPEL*  EN  Y+S E +QG LGR+DL EAQGG+L*SR+Y *  + GHS+R DR APTRL  SG L + P H S  R
Subject   2796  CASGKVQ*RKDARG*IG*TN*SIDFLWFRRVRKKSLVSNHTPEL*CRENFDYKS*ESAQGRLGRKDL*EAQGGDL*SRIYG*FRM*GHSHR*DRTAPTRLY*SGDLSIPPKHLSTTR  3146

Range 4: 2797 to 3111 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 65/105(62%) 0/105(0%) Minus/Minus
Query        2  DDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEKN  316
                D QI++  WEQ YL+ +YGL +++I K DFKG+HLVLL DL  PV+LE+ P T N  FL+ TT EYGLTPVTFSGPGETKG QY +WF+Q  R+HL+FIVL +K+
Subject   2797  DHQINITWWEQSYLIDDYGLTSEIIHKCDFKGHHLVLLRDLSYPVVLEHFPRTYNQSFLDITTPEYGLTPVTFSGPGETKGSQYFSWFIQFSRVHLSFIVLSQKH  3111

Range 5: 2801 to 3124 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 68/108(63%) 0/108(0%) Plus/Plus
Query        6  FSGSTIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIWSSRSFT  329
                F  STIK RC    W NQL+Y* PLVSPGPEKVTGVKPYS VV  RK *L V G+ SR TG  RS RSTRW*PLKS L M    RP*   R* CSH    IW S+  T
Subject   2801  FWESTIKERCTRLNWMNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKL*L*VLGKCSRTTG*ERSLRSTRW*PLKSHLWMISDVRP*SSMR*DCSHQVILIW*SQYST  3124

Range 6: 2801 to 2941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 33/47(70%) 0/47(0%) Minus/Minus
Query        6  FSQLHNSGVWFDSSDFFRTRRNQRRSVPQLVPPNWQNASCLYCTSRE  146
                FS+ HNSGVWFD+SDFFRTRRNQR+S+ QLV P    AS LYCT  E
Subject   2801  FSRHHNSGVWFDTSDFFRTRRNQRKSILQLVHPIQPRASFLYCTFPE  2941

Range 7: 3002 to 3112 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 22/37(59%) 0/37(0%) Minus/Minus
Query      207  R*PDPRSRVGATLSRL*LWPCSQSHQ*RRLQRLPPCA  317
                R PD  + VGA LS  *LWP  ++H * RLQR PPCA
Subject   3002  RSPDQYNLVGAVLSHR*LWPYIRNHP*MRLQRSPPCA  3112

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 7

Range 1: 2797 to 3162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.5 bits(584) 0.0 111/122(91%) 0/122(0%) Plus/Plus
Query        2  VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS  367
                VLLGKYNKGKMH+A LEEP EVLTSFGFAGSGKSHW QTIL+SC+VEKTLVISPRKVLKDDW GKISKKHKVVTFEVAF DDFGCKAIVIDEIGLLPPGY+DLVISVFHP TLVLLGDP QS
Subject   2797  VLLGKYNKGKMHAAELEEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLVISPRKVLKDDWAGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPNTLVLLGDPLQS  3162

Range 2: 2796 to 3152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.6 bits(462) 0.0 95/119(80%) 0/119(0%) Minus/Minus
Query        1  GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT  357
                GSP+ T+V G  TEMTRS *PGGS+PISS+TMAL PKSS+ ATSKVTTLCFFEIFP QSSL TFLGLIT VFSTSQL SMV* Q*LFPDPAKPKEV+TS+GSS  A CI PLLYFPR T
Subject   2796  GSPSSTKVFGWNTEMTRSM*PGGSSPISSMTMALHPKSSMNATSKVTTLCFFEIFPAQSSLSTFLGLITKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRST  3152

Range 3: 2796 to 3149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 75/118(64%) 0/118(0%) Plus/Plus
Query        1  CSSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYHSSFVR*  354
                C+S +VQ R+DA    GGTN*  D LWFRRVRKKSL SNHTPEL*  EN+ Y+S EG+QG*LGREDLKEAQG +L*SR++  L + GH +RRDR APT L  SGHL +   H S  R*
Subject   2796  CTSGKVQQREDACG*IGGTN*SIDFLWFRRVRKKSLVSNHTPEL*CRENLGYKS*EGAQG*LGREDLKEAQGSDL*SRVHGRLRM*GHCHRRDRTAPTWLH*SGHLSVPSKHLSTTR*  3149

Range 4: 2798 to 3115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 70/106(66%) 0/106(0%) Plus/Plus
Query        3  FFSGSTIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIWSSR  320
                +F  ST K RC+   WRNQL+Y* PLVSPGPEKVTGVKPYS VV  RK  L V GR SRMTG GRSQRSTR *PLKS    T   RP   TR* CSH  T IWSS+
Subject   2798  YFWESTTKGRCMRLNWRNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKPWL*VLGRCSRMTGQGRSQRSTR**PLKSRSWTTSDVRPLSSTR*DCSHLVTLIWSSQ  3115

Range 5: 2800 to 3111 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 70/104(67%) 0/104(0%) Minus/Minus
Query        5  DDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEK  316
                DDQI+V  WEQ YLV + GL ++V+ + DFKG++LVLL*DLP PVILE+LP T N  FL+ TT EYGLTPVTFSGPGETKG QY +WFLQ  RMHL F+VL +K
Subject   2800  DDQINVTRWEQSYLVDDNGLTSEVVHERDFKGHYLVLL*DLPCPVILEHLPRTYNQGFLDITTPEYGLTPVTFSGPGETKGSQYFSWFLQFSRMHLPFVVLSQK  3111

Range 6: 2801 to 2941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 33/47(70%) 0/47(0%) Minus/Minus
Query        6  FSQLHNSGVWFDSSDFFRTRRNQRRSVPQLVPPNWQNASCLYCTSRE  146
                FS+ HNSGVWFD+SDFFRTRRNQR+S+ QLVPP   +AS L CT  E
Subject   2801  FSRHHNSGVWFDTSDFFRTRRNQRKSILQLVPPIQPHASSLCCTFPE  2941

Range 7: 3002 to 3148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 25/49(51%) 0/49(0%) Minus/Minus
Query      207  HLTKLEW*GERPR*PDPRSRVGATLSRL*LWPCSQSHQ*RRLQRLPPCA  353
                HL  L       R*PD  ++VGA LSR * WP  +S  * RLQR  PCA
Subject   3002  HLVVLRCLDGTLR*PDQCNQVGAVLSRR*QWPYIRSRP*TRLQRSLPCA  3148

Grapevine virus A isolate I327 5, complete genome

Sequence ID: KC962564.1 Length: 7349 Number of Matches: 5

Range 1: 2788 to 3153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
244.4 bits(527) 0.0 100/122(82%) 0/122(0%) Plus/Plus
Query        2  VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS  367
                VLLGKYNKGKMH+  +EEP EVLT+FGFAGSGKSHW QTIL+ C VEK LVISPRKVLKDDWV KISKKHKVVTFEVAF DD+GCK IVIDEIGLLPPGY+DLVI+   P TLVLLGDP QS
Subject   2788  VLLGKYNKGKMHTGEIEEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLKDDWVAKISKKHKVVTFEVAFMDDYGCKDIVIDEIGLLPPGYIDLVIAAHQPRTLVLLGDPLQS  3153

Range 2: 2787 to 3143 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.3 bits(374) 0.0 82/119(69%) 0/119(0%) Minus/Minus
Query        1  GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT  357
                GSP  TRV G*   +TRS  PGG +PISSIT++LQP SS+KATS VTTLCF +I  TQSSL TFLGLIT+ FST Q  SMV* Q*LFPDPA PK VSTS GSS    CILPLLY P  T
Subject   2787  GSPRSTRVRG*CAAITRSMYPGGRSPISSITISLQP*SSMKATSNVTTLCFLDILATQSSLSTFLGLITSTFSTEQCLSMV*HQ*LFPDPANPKAVSTSFGSSISPVCILPLLYLPSST  3143

Range 3: 2791 to 3102 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 44/104(42%) 0/104(0%) Minus/Minus
Query        5  DDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEK  316
                D QI+V GW +  L+Y+  L   V+ +GD + YH V L  L +P+I E+ P  D   FL+ T  +YGLTPVTF    E K   +L WFL    +HLA +V  E+
Subject   2791  DHQIYVPGW*ESNLIYHDILTTVVVHEGDLECYHFVFLGYLGNPIIFEHFPGADYEHFLHGTVFKYGLTPVTFP*SCEPKSC*HLLWFLYFACVHLALVVFAEQ  3102

Range 4: 2790 to 3122 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 45/111(41%) 0/111(0%) Plus/Plus
Query        4  SSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYH  336
                ++R++Q  QDA  +  GT  G +  W RR+R+KSL SNHT  L   E+   Q +E +Q *LG +D++E Q GN+  RL+  L L G+  R D    TR+  SG    S  H
Subject   2790  TARQIQQGQDAHRRNRGTKGGANSFWVRRIREKSLVSNHT*TLFRGESARNQPQESAQR*LGCQDIQETQSGNIRGRLHGRLRL*GYRDR*DWTPTTRVHRSGDRCASATH  3122

Range 5: 2789 to 3097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 44/103(43%) 0/103(0%) Plus/Plus
Query        3  FFSGSTIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIW  311
                + S +T +ARC     RNQ R *  L S    KVTGVKPY   V  RK   S  G+ S+M G  R  R+T+W*  +SP   T   R   * R    HP T IW
Subject   2789  YCSANTTRARCTQAK*RNQRRC*QLLGSQDQGKVTGVKPYLNTVPWRKCS*SAPGKCSKMIGLPRYPRNTKW*HSRSPSWTTTVVRIS**MRLDSYHPGT*IW  3097

Grapevine virus A isolate PA3, complete genome

Sequence ID: AF007415.2 Length: 7351 Number of Matches: 7

Range 1: 2787 to 3152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
242.1 bits(522) 0.0 98/122(80%) 0/122(0%) Plus/Plus
Query        2  VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS  367
                VLLGKYNKGKMHS  ++EP EVLT+FGFAGSGKSHW QTIL+ C VEK LVISPRKVLKDDW  KISK+HKVVTFEVAF DD+GCK +VIDEIGLLPPGY+DLVI+V  P TLVLLGDP QS
Subject   2787  VLLGKYNKGKMHSEGIDEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVVIDEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQS  3152

Range 2: 2786 to 3148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.6 bits(401) 0.0 86/121(71%) 0/121(0%) Minus/Minus
Query        1  CGGSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT  363
                C GSP  T V G  T MT+S  PGGSNPISSIT +LQP SS+KATS VTTLC FEIF  QSSL TF GLIT  FST Q  SMV* Q*LFP+PA PK VSTS GSS  +ECILPLLYFPR T
Subject   2786  CSGSPRSTSVRGLCTAMTKSMYPGGSNPISSITTSLQP*SSMKATSNVTTLCLFEIFEVQSSLSTFRGLITRAFSTEQCLSMV*HQ*LFPEPANPKAVSTSFGSSMPSECILPLLYFPRST  3148

Range 3: 2789 to 3100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 48/104(46%) 0/104(0%) Plus/Plus
Query        4  SSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGH  315
                +S +VQ*RQDA      T  G       R R+KSL SNHT  L   E+  YQ  EG+Q  L  +DLKEAQ G++    + *LWLQG  YRRDRVA + +    H
Subject   2789  ASGKVQ*RQDALRGHR*TKGGAHRFRICRFREKSLVSNHT*TLFRRESPRYQPTEGTQRRLDLKDLKEAQSGDIRGGFHG*LWLQGCGYRRDRVATSWVHRFSH  3100

Range 4: 2787 to 2966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 29/60(48%) 0/60(0%) Minus/Minus
Query        2  ILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEKN  181
                + E LPW DN  FL  T  +YGLTPVTF    +++ G++L WF+    +HLAFIVL +K+
Subject   2787  VFEYLPWADNEGFLYGTVFKYGLTPVTFP*TCKSESGEHLLWFIYAL*VHLAFIVLSQKH  2966

Range 5: 2992 to 3072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 13/27(48%) 0/27(0%) Minus/Minus
Query      207  ATLSRL*LWPCSQSHQ*RRLQRLPPCA  287
                AT SR *  PCS +H *+  +  P CA
Subject   2992  ATRSRR*PHPCSHNHP*KPPRMSPLCA  3072

Range 6: 2884 to 3072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 34/63(54%) 0/63(0%) Plus/Plus
Query       99  KVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GC  287
                KVTGVKPY   V  RK  LS  GR+S+ TG  RSQR T+W*  +    M +AAR  L TR GC
Subject   2884  KVTGVKPYLNTVP*RKPSLSAHGRYSKTTGPQRSQRGTKW*HSRWLSWMIMAARMWLSTRSGC  3072

Range 7: 2791 to 2859 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 12/23(52%) 0/23(0%) Plus/Plus
Query        6  FSGSTIKARCILPVWRNQLRY*P  74
                F  STIKARC      NQ R  P
Subject   2791  FWESTIKARCTQRA*MNQRRCSP  2859