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Nucleotide Sequence (462 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
462

Descriptions

Alignments

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: Length: 4655 Number of Matches: 1

Range 1: 4126 to 4563 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 50/146(34%) 0/146(0%) Minus/Plus
Query        5  VLDCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSK  442
                V D Y IK +HR VGGISE+K S +  LI S    +    I  LPGV +Y+  +  +L++   ++    R+  ATY+AV  K+R + + R    + +  +R ++K HK      NYGKA + GF ++VL        +  +LN S+
Subject   4126  VEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVLGREMPDATITTILNTSQ  4563

Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4571 Number of Matches: 1

Range 1: 4077 to 4511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 53/145(37%) 0/145(0%) Minus/Plus
Query        2  DCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSKN  436
                D Y I+T+HR VGGI+ED  + V   IR+S      T    LPGV  Y+R++K  L+LE P+    +RI  AT +AV    + + V +  N++RY + RAL++ + + T+   +GKA +TGF+ DVL    +   +  L++ ++N
Subject   4077  DLYDIRTAHRVVGGIAEDVSARVDKFIRTSSESIETTLPDTLPGVDAYARLLKKVLELEVPVSVVSTRIRNATLNAVQLTRKTVTVEKTLNVQRYMVYRALYRAYADVTNNPMFGKAMLTGFIFDVLTQNAQLSAVAQLVSSAQN  4511

Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4605 Number of Matches: 2

Range 1: 4235 to 4546 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 41/104(39%) 0/104(0%) Minus/Plus
Query        2  LPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSKN  313
                LPG+  Y+  + ASL L R  +    R+ +AT +AV    + I+V  N ++KR  +LRAL+K + +  D   +GKAKMTGF++DVL  + K   L   L GS++
Subject   4235  LPGLDSYADELIASLGLSRHRKKVRERVQQATLNAVQLVRKAISVVSNVDMKRSRVLRALYKSYADVADSPMFGKAKMTGFVIDVLANSTKLRTLSMKLRGSQD  4546

Range 2: 4103 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 11/33(33%) 0/33(0%) Minus/Plus
Query      347  TVLDCYRIKTSHRCVGGISEDKRSDVKWLIRSS  445
                TV   Y+IK +H+ VGG S    + + ++I+ +
Subject   4103  TVEIAYKIKQAHKVVGGASRLADASINYIIKQA  4201

Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77

Sequence ID: Length: 4784 Number of Matches: 2

Range 1: 4546 to 4689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 18/48(38%) 0/48(0%) Minus/Plus
Query        2  LRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSKN  145
                ++ ++K HK E  +  YGKA +TG+ M++L    + G L  LL  S+N
Subject   4546  MKKIYKAHKGEIKVSQYGKAVLTGYGMELLRSRLRPGALRTLLTRSEN  4689

Range 2: 4351 to 4485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 11/45(24%) 0/45(0%) Minus/Plus
Query      206  RKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAV  340
                +    ++  LPG+ DY+  V   L +E  ++    ++ ++T D+V
Subject   4351  KSSVPELPKLPGIHDYADYVAKVLPIESKVKKMCEKLTKSTQDSV  4485