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Queries

Nucleotide Sequence (412 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
412

Descriptions

Alignments

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: Length: 4655 Number of Matches: 1

Range 1: 2347 to 2712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 50/122(41%) 0/122(0%) Plus/Plus
Query       45  EVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR  410
                E   SV+GV M G+++   +  +F+A I QY++T+SKAML   TRHFS LYES  +D P +   L+RDR P    +E+MT  Q+E     KI+  H  H+T  +V KS  R +  R    +R
Subject   2347  EASKSVYGVTMSGLVIANGKAKFFFASIKQYLLTQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKISGAHHFHFTPMQVLKSIGRGRLERAIQASR  2712

Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77

Sequence ID: Length: 4784 Number of Matches: 1

Range 1: 2455 to 2664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 25/70(36%) 0/70(0%) Plus/Plus
Query       42  SEVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDR  251
                +EV   +FG     V ++  + +  Y KIDQ  +T   A+  I +RH+S LYESV +  P++   L+R R
Subject   2455  TEVNTLLFGTITPAVHIKVGQLNCLYLKIDQCCVTTHPALNIILSRHYSQLYESVDFVNPMSDSMLFRKR  2664

Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4571 Number of Matches: 2

Range 1: 2292 to 2444 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 13/51(25%) 0/51(0%) Plus/Plus
Query       39  DSEVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSG  191
                +  V    +G  +   ++ G + +Y Y  +DQ I   ++ +L + +RHF G
Subject   2292  ECNVAYDYYGTVVSARLVPGRDATYVYYYVDQDIQPVTQNLLGMLSRHFLG  2444

Range 2: 2562 to 2609 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 11/16(69%) 0/16(0%) Plus/Plus
Query      312  PKITSGHQIHYTYSEV  359
                PKI+  H IHYT SEV
Subject   2562  PKISGAHHIHYTASEV  2609

Nucleotide Sequence (529 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
529

Descriptions

Alignments

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: Length: 4655 Number of Matches: 3

Range 1: 4051 to 4512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 71/154(46%) 0/154(0%) Minus/Plus
Query       48  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL  509
                GM+  II+ LR +YY RQ+V+C T +E  Y+IKN HRV GGISE  D+ +  LI      +  V +P L GV+EYA E+ K L +   ++ + DR+  AT  AV+ K RKM I+     Q   +++ IYKA KG      YGKAALVGFAL+VL
Subject   4051  GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL  4512

Range 2: 4083 to 4388 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 36/102(35%) 0/102(0%) Plus/Minus
Query      172  IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS  477
                IFI      TA  VA   LS        + N    S AYS TP   G  T        +I      S +S +PP TLC F I   +S  V  +T CL *Y S
Subject   4083  IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS  4388

Range 3: 4431 to 4511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/27(59%) 0/27(0%) Plus/Minus
Query       49  NTSSANPTSAAFPYPATSTFPLKALYI  129
                NTS+ANPT AA P    +  PL ALYI
Subject   4431  NTSNANPTKAALP*FCDN*LPLCALYI  4511

Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4605 Number of Matches: 2

Range 1: 4232 to 4492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 29/87(33%) 0/87(0%) Minus/Plus
Query       48  KLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL  308
                KL G+  YA E+  +L + +  + + +RV+ ATL+AV    + ++++ N +++ S+ L+A+YK++    D   +GKA + GF +DVL
Subject   4232  KLPGLDSYADELIASLGLSRHRKKVRERVQQATLNAVQLVRKAISVVSNVDMKRSRVLRALYKSYADVADSPMFGKAKMTGFVIDVL  4492

Range 2: 4031 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/55(40%) 0/55(0%) Minus/Plus
Query      345  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIK  509
                G S+ +IT LR +YY   A +    +E  Y IK  H+V GG S   DA +  +IK
Subject   4031  GGSMDLITRLRDKYYQHVAPIYNATVEIAYKIKQAHKVVGGASRLADASINYIIK  4195

Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4571 Number of Matches: 2

Range 1: 4200 to 4457 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 29/86(34%) 0/86(0%) Minus/Plus
Query       48  LAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL  305
                L GV  YA  + K L++   V ++  R+R ATL+AV    + + +    N+Q     +A+Y+A+    +   +GKA L GF  DVL
Subject   4200  LPGVDAYARLLKKVLELEVPVSVVSTRIRNATLNAVQLTRKTVTVEKTLNVQRYMVYRALYRAYADVTNNPMFGKAMLTGFIFDVL  4457

Range 2: 4023 to 4160 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 18/46(39%) 0/46(0%) Minus/Plus
Query      345  LRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIK  482
                LR  YY R A +     +  Y I+  HRV GGI+E   A V++ I+
Subject   4023  LRELYYDRMAPIYSLRPQDLYDIRTAHRVVGGIAEDVSARVDKFIR  4160

Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77

Sequence ID: Length: 4784 Number of Matches: 6

Range 1: 4525 to 4644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 17/40(42%) 0/40(0%) Minus/Plus
Query       39  NIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVLQWR  158
                ++Q   ++K IYKA KG++ V+ YGKA L G+ +++L+ R
Subject   4525  SVQDRLNMKKIYKAHKGEIKVSQYGKAVLTGYGMELLRSR  4644

Range 2: 4168 to 4323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 20/52(38%) 0/52(0%) Minus/Plus
Query      354  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQ  509
                G S++ I  +R  YY + A + K+ ++  Y IK+ HRV GGIS+   A V++
Subject   4168  GASIRKIARIREVYYHKLAGIFKSEVDTMYAIKSIHRVNGGISQDMYAAVDR  4323

Range 3: 4366 to 4488 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 15/41(37%) 0/41(0%) Minus/Plus
Query      195  EVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVT  317
                E+PKL G+H+YA  VAK L +   V+ + +++  +T  +V+
Subject   4366  ELPKLPGIHDYADYVAKVLPIESKVKKMCEKLTKSTQDSVS  4488

Range 4: 4167 to 4325 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 23/53(43%) 0/53(0%) Plus/Minus
Query      352  SCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLSLRLVIICRLIP  510
                S ST+A  + EMPP TLC+ LI    S   L   A L *  SL   I   L P
Subject   4167  SLSTAAYMSCEMPPFTLCMDLIAYIVSTSDLNMPASLW**TSLMRAIFLMLAP  4325

Range 5: 4554 to 4646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 14/31(45%) 0/31(0%) Plus/Minus
Query       37  SLHCNTSSANPTSAAFPYPATSTFPLKALYI  129
                +L  N+S   P + A PY  T   PL ALYI
Subject   4554  NLERNSSMPYPVNTALPYWDTLISPLCALYI  4646

Range 6: 4365 to 4427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 11/21(52%) 0/21(0%) Plus/Minus
Query      256  MSNVFATSIAYSCTPASLGTS  318
                + N FAT  A SC P S G S
Subject   4365  IGNTFAT*SA*SCIPGSFGNS  4427

Nucleotide Sequence (348 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
348

Descriptions

Alignments

Red clover powdery mildew-associated totivirus 6 genomic RNA, complete genome, isolate: RPaTV6_75-22

Sequence ID: Length: 5007 Number of Matches: 1

Range 1: 3638 to 3964 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 54/109(50%) 0/109(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQINH  327
                GK+RAIYG D TS++L+NF M +CE  L   FP+ +AA   +V +RV+ VL + +PYC DFEDFNSQHS +AM+AV+LA+G+V    ++ +Q  A +WT   I  Q  H
Subject   3638  GKMRAIYGTDVTSFVLTNFCMGDCEEFLEPVFPLKEAATLSHVKARVKDVLNNGVPYCFDFEDFNSQHSGDAMEAVLLAFGEVCEDMMSHEQRAAFEWTCGSIGKQTIH  3964

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: Length: 4655 Number of Matches: 5

Range 1: 3298 to 3618 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 69/107(64%) 0/107(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQI  321
                GK RAIYG D TSY+LSNFA YNCENVLPN+FPVG+ AND NVV+RV  VL +R+P+CLDFEDFNSQHS   MKAV+ AY + F   LT +Q +A  WTA  +  QI
Subject   3298  GKQRAIYGTDLTSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQI  3618

Range 2: 3306 to 3452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 33/49(67%) 0/49(0%) Minus/Minus
Query        9  FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIAL  155
                F T  TL TTF S A+ PTGN  G+TFSQL  AKLDS *LV S PYIAL
Subject   3306  FSTPETLFTTFSSLASRPTGN*FGSTFSQL*NAKLDST*LVRSVPYIAL  3452

Range 3: 3455 to 3496 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 9/14(64%) 0/14(0%) Minus/Minus
Query      158  DY*SPQSPSSMAAC  199
                DY*SPQS    A C
Subject   3455  DY*SPQSQDRKAFC  3496

Range 4: 3313 to 3597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 34/95(36%) 0/95(0%) Minus/Minus
Query       16  CCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY  300
                C P  R  L  S+   E + +S +   H    +LTIEVLKV+     V+ +     HHV V+   +  K + *++ T+V  +IRQYVA +IC +Y
Subject   3313  CGPHCRLLLFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKTERHSVI*HSRNSVHHVFVIGISSDWKLIW*YVLTIVKREIRQYVASQICPIY  3597

Range 5: 3314 to 3499 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 26/62(42%) 0/62(0%) Plus/Plus
Query       17  YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVS  202
                Y  QI  ATYCLI   T V+  Y   F+  +   T+TW   +   * T C +  TLRTSIV+
Subject   3314  YMGQI*LATYCLISRFTIVRTYYQINFQSDEMPMTKTW*TEFREC*ITECLSVLTLRTSIVN  3499

Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4571 Number of Matches: 1

Range 1: 3243 to 3557 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 56/105(53%) 0/105(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISN  315
                GK+RAIYG D TSY+L+++A +NCE+ LP  FPVG+ A    V +RV A+L+  +P C+DFEDFNSQHS +AM+AVV AY D +++ +T +Q++A  WT + ISN
Subject   3243  GKMRAIYGTDLTSYVLAHYAFFNCEDTLPTDFPVGEKARPSFVSARVAAILEGTVPLCVDFEDFNSQHSNDAMEAVVQAYIDAYSQYMTPEQVQAAMWTRESISN  3557

Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77

Sequence ID: Length: 4784 Number of Matches: 4

Range 1: 3415 to 3723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 66/103(64%) 0/103(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPI  309
                GK RAIYG D TSY+LSNFAMY CE+VLP+ FPVG  A++ NV +RV  VL +R+P C+DFEDFNSQHS EAM+AV+ AY DVF+  LT +Q  AL+WTA  I
Subject   3415  GKQRAIYGTDLTSYVLSNFAMYACESVLPSAFPVGPDADEANVAARVGGVLNNRMPLCIDFEDFNSQHSVEAMQAVLDAYSDVFDHLLTVEQKYALRWTAQSI  3723

Range 2: 3430 to 3690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 33/87(38%) 0/87(0%) Minus/Minus
Query       16  LIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY  276
                L+ S++ V++++V   N  H F  +L +EV KV     PV+ N +    H+  V  + HR+   *H FT VHG++RQ V C I S+Y
Subject   3430  LLHSQQVVKHVAVGV*NRLHCFDRVLAVEVFKVYT*RHPVV*NPTDARGHICFVRIWPHRESGR*HRFTSVHGEVRQNV*C*IRSIY  3690

Range 3: 3431 to 3607 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 23/59(39%) 0/59(0%) Plus/Plus
Query       17  YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTS  193
                Y E+I   T+C   PCT V  CY     W + +T + W +    F* TGC    TL+TS
Subject   3431  YMERI*HHTFCRTSPCTLVNRCYRPLSLWGQMRTKQMWPRASVGF*TTGCLYV*TLKTS  3607

Range 4: 3426 to 3569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 26/48(54%) 0/48(0%) Minus/Minus
Query       12  FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIA  155
                FRT  T   TF S A+ PTG   GNT SQ YMAK D    V S PY+A
Subject   3426  FRTPPTRAATFASSASGPTGKADGNTDSQAYMAKFDKTYDVRSVPYMA  3569

Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4605 Number of Matches: 2

Range 1: 3278 to 3586 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 60/103(58%) 0/103(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPI  309
                GKLRAIYG D TSY+LS+FA YNCE+VLP  FPVGK A    V SR+R++L   +P+C+DFEDFNSQHS E+M AV+ AY +V+ ++ +++Q+ ALQWT   I
Subject   3278  GKLRAIYGTDLTSYVLSHFAFYNCEDVLPAHFPVGKKARPSYVRSRIRSILSGSIPFCIDFEDFNSQHSNESMIAVIEAYLEVYQESFSKEQIMALQWTIQSI  3586

Range 2: 3290 to 3586 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 31/99(31%) 0/99(0%) Minus/Minus
Query       13  YWVCCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVYS  309
                Y + CPL+  +L   +  + Y  V   +  HG   +LT+E+ K+   W     + S  * ++   C  T  K    HI  VV GK+ QYV  +I S+ S
Subject   3290  YTLYCPLQSHNLFLGK*LLVYFEVCFDHCNHGLV*VLTVEIFKIYTEWYATT*D*SDS*PNIGWSCFLTDWKMSWEHILAVVEGKM*QYV*SKIRSINS  3586