Queries
Nucleotide Sequence (287 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
217.3 | 965.4 | 37% | 3.118e-56 | 79% | NC_003605 |
Alignments
Range 1: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.3 bits(468) | 0.0 | 90/95(95%) | 0/95(0%) | Plus/Plus |
Query 2 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 286 VKRV+DKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGV FR+LTGQFKEMK+KETLA+EEELRKRIRTYNSTYYEIHGKHADAKQ Subject 3548 VKRVKDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVRFRSLTGQFKEMKYKETLAREEELRKRIRTYNSTYYEIHGKHADAKQ 3832
Range 2: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 80/95(84%) | 0/95(0%) | Minus/Minus |
Query 2 LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 286 LFG+SVLSVDF+IS +VGAYALT FLL C RLF+LHLF+LASQ PE YA*RYQC*EE SNVQYVR* WYHVVH*FS*PF+ALHLHSDPLV NSLY Subject 3548 LFGVSVLSVDFIISTVVGAYALT*FLLPC*RLFILHLFELASQTPESYA*RYQC*EEGSNVQYVR*LWYHVVH*FS*PFHALHLHSDPLVFNSLY 3832
Range 3: 3547 to 3720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 54/58(93%) | 0/58(0%) | Minus/Minus |
Query 1 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 174 LNWPVR RN TP+DISVRRRVPTF+MFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT Subject 3547 LNWPVRLRNRTPNDISVRRRVPTFSMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 3720
Range 4: 3771 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 17/21(81%) | 0/21(0%) | Minus/Minus |
Query 225 FVWHQRAFRGFRNKCYCRCVC 287 FVW QRAFRGF NK CRCVC Subject 3771 FVWRQRAFRGFHNKYCCRCVC 3833
Range 5: 3547 to 3729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.6 bits(270) | 0.0 | 53/61(87%) | 0/61(0%) | Plus/Plus |
Query 1 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 183 SKES*RQVGRSASARR+MVS*ISALHDTR NEH ERWN PPNTDI RR+IPE DWPV RDE Subject 3547 SKES*RQVGRSASARREMVS*ISALHDTRANEHTERWNPPPNTDIVRRTIPESDWPVQRDE 3729
Range 6: 3759 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 20/25(80%) | 0/25(0%) | Plus/Plus |
Query 213 NCVSAYAPTIALITKSTESTLMPNK 287 N VSAYAPT LI KSTESTL PNK Subject 3759 NYVSAYAPTTVLIMKSTESTLTPNK 3833
Range 7: 3549 to 3722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 51/58(88%) | 0/58(0%) | Plus/Plus |
Query 3 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLK 176 *REL+TSGSECKCKA*NG*LNQCTT*YQ+*RTY*TLE SS*H*YR*A SG *LAS K Subject 3549 *RELKTSGSECKCKA*NG*LNQCTT*YQS*RTY*TLEPSS*H*YR*AYDSGV*LASSK 3722
Nucleotide Sequence (176 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
61.6 | 61.6 | 32% | 7.545e-10 | 39% | NC_014252 | |
119.3 | 593.8 | 39% | 3.147e-27 | 80% | NC_003605 | |
68.9 | 68.9 | 30% | 4.685e-12 | 45% | NC_027706 | |
61.1 | 61.1 | 30% | 1.037e-09 | 42% | NC_020896 | |
60.2 | 60.2 | 28% | 1.957e-09 | 37% | NC_010736 |
Alignments
Range 1: 948 to 1115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 22/56(39%) | 0/56(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHTQH 169 ++RGR +G +++S SK+T S+T R++ YS F+N ++T F++N PK H H Subject 948 IIRGRHEGILLNSLSKLTESVTLRIIHYSSTGDKFFNSFATTFVNNVPKNLDHACH 1115
Range 1: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 46/54(85%) | 0/54(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT 163 VVRGRV G++IDSQSKVTH++THRMVQYSDVARNFWNGYSTCFMHNTPK HT Subject 1331 VVRGRVYGKIIDSQSKVTHTLTHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT 1492
Range 2: 1331 to 1468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 42/46(91%) | 0/46(0%) | Minus/Minus |
Query 2 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 139 VVHETS*VSVPEVSCDVAVLNH VR+GVCDLTLR+YNFTIYP PNN Subject 1331 VVHETS*VSVPEVSCDVAVLNHAVREGVCDLTLRVYNFTIYPPPNN 1468
Range 3: 1332 to 1493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 43/54(80%) | 0/54(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP 164 LLG G MVKL* RKVRSHTPSRT WFNTATSHETSGTDTQLVSCTT + + P Subject 1332 LLGGGYMVKL*TRKVRSHTPSRTAWFNTATSHETSGTDTQLVSCTTPQRTYSIP 1493
Range 4: 1330 to 1470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 40/47(85%) | 0/47(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH 141 RC*G G W*+YR AK*GHT HAP+GSIQRRRTKLLERILNLFHAQH Subject 1330 RC*GEGIW*NYRLAK*GHTHPHAPHGSIQRRRTKLLERILNLFHAQH 1470
Range 1: 1230 to 1388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 24/53(45%) | 0/53(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKH 160 +VRGR++G ++D++SK+THS+ + YS VA+ FW G++ F+HN PK H Subject 1230 IVRGRINGMLVDARSKLTHSLVCVLHHYSSVAQQFWEGFTGTFVHNKPKDLTH 1388
Range 1: 1386 to 1544 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 22/53(42%) | 0/53(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKH 160 +VRGR +G++ D++ +VT S+ RM Y DVA+ FW G+ F+ N P+ H Subject 1386 IVRGRHEGKLYDARQRVTESVMLRMQHYMDVAQKFWKGFDKMFLPNRPEERSH 1544
Nucleotide Sequence (399 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
186.2 | 938.9 | 20% | 1.281e-46 | 78% | NC_003605 | |
133.9 | 221.2 | 20% | 6.792e-31 | 59% | NC_027706 | |
135.8 | 311.7 | 17% | 1.907e-31 | 41% | NC_002600 | |
137.6 | 213.8 | 19% | 5.352e-32 | 57% | NC_008028 | |
133.0 | 255.2 | 18% | 1.297e-30 | 36% | NC_004047 |
Alignments
Range 1: 2474 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.2 bits(400) | 0.0 | 75/77(97%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTG+H Subject 2474 VDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGYH 2704
Range 2: 2467 to 2712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 64/82(78%) | 0/82(0%) | Minus/Plus |
Query 88 FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSK 333 + RRPRG *RFHE+GTRDSSETARGVALNDGC +GL*Y YISSRHPKIG+T NLSRS NENI C *LIWFNHDWI +S+ Subject 2467 YARRRPRGSG*RFHENGTRDSSETARGVALNDGCSNGL*YTGYISSRHPKIGITPNLSRSCNENISCY*LIWFNHDWISYSE 2712
Range 3: 2477 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 65/76(86%) | 0/76(0%) | Plus/Minus |
Query 96 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV 323 M SSRD*TI*VN M+CFRC+ID*DS * RSSGVWMKCS YITSR +IHH*GPLPELFHCYLACH REIFSL+LWDV Subject 2477 MISSRD*TI*VNNMKCFRCMID*DSG*FRSSGVWMKCSQYITSRCYIHH*GPLPELFHCYLACHFREIFSLILWDV 2704
Range 4: 2476 to 2697 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 71/74(96%) | 0/74(0%) | Plus/Minus |
Query 103 PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS 324 PVVIEPYESIT NVFVA*STKIRGNSDLRVSG*NVA+ILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS Subject 2476 PVVIEPYESIT*NVFVA*STKIRGNSDLRVSG*NVASILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS 2697
Range 5: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 65/77(84%) | 0/77(0%) | Minus/Plus |
Query 92 TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 322 TSQR +LKISR+WHAR*Q*NSSGSGPQ*WM +RLVIY LHFIQTPEDR+Y ES*SI QRKH M LTHMVQSRLD IF Subject 2478 TSQRIRLKISRKWHAR*Q*NSSGSGPQ*WM*QRLVIYWLHFIQTPEDRNYPES*SIMQRKHFMLLTHMVQSRLDIIF 2708
Range 6: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 63/77(82%) | 0/77(0%) | Plus/Minus |
Query 92 ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR 322 E IQS*LNHMSQ H MFSL DRLRF V PIFGCLDEM* +YYKP HPSLRATPRAVSLLSRVP S*NL* PLGR Subject 2478 EYDIQS*LNHMSQ*HEMFSLHDRLRFGVIPIFGCLDEM*PVYYKPLLHPSLRATPRAVSLLSRVPFS*NL*PDPLGR 2708
Range 1: 2358 to 2603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 48/82(59%) | 0/82(0%) | Minus/Plus |
Query 96 WVCLGLDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 341 ++ + +DV E+ AK+FTK AR++A+++LG+WP++ DVA +C +LA+F PDT +SELPR+LVDH T+T HVIDSYGS+TTG+H Subject 2358 YMAMLIDVSEEAAKEFTKKARDLAIQELGQWPTLTDVAASCYLLASFFPDTAKSELPRMLVDHETQTIHVIDSYGSLTTGYH 2603
Range 2: 2375 to 2596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 46/74(62%) | 0/74(0%) | Plus/Minus |
Query 103 PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS 324 PVV EPYESITW V V+*ST IRGNSD VSG A Q ATS+ GH PS A SRA FV S A SS TS Subject 2375 PVVNEPYESITWIVCVS*STSIRGNSDFAVSGKKDARR*QLAATSVSVGHCPSS*IAKSRAFFVNSFAASSLTS 2596
Range 1: 2145 to 2375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 53/77(69%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 ++V ED AKDFTKM R+ V LG WPSMMDVATAC IL FHP+T+ +ELPRILVDH KT HVIDS+GSI+TG+H Subject 2145 VNVNEDSAKDFTKMIRDTIVPMLGTWPSMMDVATACYILTVFHPETKSAELPRILVDHTNKTMHVIDSFGSISTGYH 2375
Range 2: 2150 to 2368 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 44/73(60%) | 0/73(0%) | Plus/Minus |
Query 103 PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGT 321 PV IEP ESIT V *ST+I G+S L VSG ++ QAVATSII GH P+ T +SR IFVKSLA SS T Subject 2150 PVEIEPNESITCMVLFV*STRILGSSALFVSGWKTVSM*QAVATSIILGHVPNIGTIVSRIIFVKSLALSSFT 2368
Range 3: 2160 to 2393 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 32/78(41%) | 0/78(0%) | Plus/Minus |
Query 78 CLVAWKMESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLV 311 C M S RD*T *++ M C+I DS *L + + M+ *Y+TS HIHH P + H +A HL EI V Subject 2160 CSSLENMISCRD*TK*IDNMHGLVCMIHKDSG*LCAFCLRMENC*YVTSCCHIHHTWPCSQHRHDCIAYHLCEILGTV 2393
Range 4: 2221 to 2379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 24/53(45%) | 0/53(0%) | Minus/Plus |
Query 92 GPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 250 G *WMW++LV Y* I + +SY ES I Q + M H+VQS D IF Subject 2221 GQV*WMWQQLVTY*QFSILRQKAQSYPESLWIIQTRPCMLSIHLVQSLQDIIF 2379
Range 1: 2123 to 2353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 51/77(66%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 ++V E+ AKDFTKM R++ ++LG+WPSM+DVATAC +L FHPDT+ +ELPRILVDH TKT HVIDSYGS+ TG+H Subject 2123 INVSENDAKDFTKMVRDVIAERLGKWPSMLDVATACFLLTVFHPDTKNAELPRILVDHKTKTMHVIDSYGSMHTGYH 2353
Range 2: 2143 to 2346 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 39/68(57%) | 0/68(0%) | Plus/Minus |
Query 103 PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA 306 PV I+PYES+T VFV *ST I G+S VSG N N QAVATS + GH PS SR I VKS A Subject 2143 PVCIDPYESMTCMVFVL*STNILGSSAFLVSGWNTVNRKQAVATSSMLGHFPSLSAITSRTILVKSFA 2346
Range 1: 2177 to 2407 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 50/77(65%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 ++V ED+AKDFTKM R++ V +LG WPSMMDVATA I+ FHP+TR +ELPRILVDHA++T HVIDS+GS++ G+H Subject 2177 VNVNEDEAKDFTKMVRDVVVPKLGTWPSMMDVATAVYIMTVFHPETRSAELPRILVDHASQTMHVIDSFGSLSVGYH 2407
Range 2: 2182 to 2406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 44/75(59%) | 0/75(0%) | Plus/Minus |
Query 97 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGT 321 W P EP ESIT V +A*ST IRGNS L VSG + AVATSI+ GH PS T SR IFVKS A SS T Subject 2182 WYPTDNEPNESITCIV*LA*STSIRGNSALLVSGWKTVIM*TAVATSIMLGHVPSFGTTTSRTIFVKSFASSSLT 2406
Range 3: 2206 to 2424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 26/73(36%) | 0/73(0%) | Minus/Plus |
Query 79 FHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPN 297 F++DG R +A +DGC G + S + VT++ SRS N C+*LIW WIP K N Subject 2206 FYKDGARCGRAKTWNMAEHDGCCYGSLHNDSFPS*DKECRVTTDTSRSC*SNNACD*LIWLVICWIPCVKGGN 2424
Nucleotide Sequence (200 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
159.1 | 810.1 | 34% | 4.612e-39 | 83% | NC_003605 | |
103.2 | 151.5 | 52% | 3.104e-22 | 55% | NC_027706 | |
81.3 | 81.3 | 33% | 1.297e-15 | 44% | NC_014898 | |
83.1 | 83.1 | 32% | 3.639e-16 | 48% | NC_005288 | |
80.3 | 80.3 | 32% | 2.447e-15 | 43% | NC_020896 |
Alignments
Range 1: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 60/66(91%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 VVRGRV G++IDSQSKVTH++THRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVK+CGT Subject 1331 VVRGRVYGKIIDSQSKVTHTLTHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKDCGT 1528
Range 2: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 59/66(89%) | 0/66(0%) | Minus/Minus |
Query 2 SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 199 SA FNIKI*CAGMEYVLWGVVHETS*VSVPEV CDVAVLNH VR+GVCDLTLR+YNFTIYP PNN Subject 1331 SAAIFNIKI*CAGMEYVLWGVVHETS*VSVPEVSCDVAVLNHAVREGVCDLTLRVYNFTIYPPPNN 1528
Range 3: 1330 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 56/66(85%) | 0/66(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH 198 RC*G G W*+YR AK*GHT HAP+GSIQRRRT+LLERILNLFHAQHPKGHTPYLHIRF*C*R+ H Subject 1330 RC*GEGIW*NYRLAK*GHTHPHAPHGSIQRRRTKLLERILNLFHAQHPKGHTPYLHIRF*C*RLRH 1527
Range 4: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 59/66(89%) | 0/66(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL 200 LLG G MVKL* RKVRSHTPSRT WFNTATSH TSGTDTQLVSCTTPQRTYSIPAHQILMLK AL Subject 1332 LLGGGYMVKL*TRKVRSHTPSRTAWFNTATSHETSGTDTQLVSCTTPQRTYSIPAHQILMLKIAAL 1529
Range 5: 1360 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 52/56(93%) | 0/56(0%) | Minus/Minus |
Query 31 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 198 VP SLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*T+RCV CVTLLCESI Subject 1360 VPQSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TMRCVRVCVTLLCESI 1527
Range 6: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 55/66(83%) | 0/66(0%) | Minus/Minus |
Query 3 QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 200 QC L*HQNLMCRYGVCPLGCCA*NKLSIRSRS VRRRCIEP GA* V*PYFA+L* +H+P P*Q Subject 1332 QCRNL*HQNLMCRYGVCPLGCCA*NKLSIRSRSFVRRRCIEPCGA*GCV*PYFASL*FYHIPSP*Q 1529
Range 1: 1230 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 36/66(55%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 +VRGR++G ++D++SK+THS+ + YS VA+ FW G++ F+HN PKD+ H CTSDF VKECGT Subject 1230 IVRGRINGMLVDARSKLTHSLVCVLHHYSSVAQQFWEGFTGTFVHNKPKDLTHECTSDFSVKECGT 1427
Range 1: 1433 to 1630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 29/66(44%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 +VRG ++IDS+ +VT + +M+ YSD FW G++ F+ N P DI H CTSDF+V++CG+ Subject 1433 IVRGSNYNQIIDSRVRVTKFVKDKMIHYSDPGTVFWRGFNRTFLQNKPTDINHQCTSDFNVEQCGS 1630
Range 1: 999 to 1193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 31/65(48%) | 0/65(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECG 196 VVRG +G++ +++ KVT ++THRM+ YS FW G+++ F+ PK+I HTCTS+F+V ECG Subject 999 VVRGNHEGKLYEARRKVTLTMTHRMIHYSGPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECG 1193
Range 1: 1386 to 1580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 28/65(43%) | 0/65(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECG 196 +VRGR +G++ D++ +VT S+ RM Y DVA+ FW G+ F+ N P++ H C +D DV CG Subject 1386 IVRGRHEGKLYDARQRVTESVMLRMQHYMDVAQKFWKGFDKMFLPNRPEERSHVCVADLDVNRCG 1580
Nucleotide Sequence (199 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
94.8 | 94.8 | 33% | 1.109e-19 | 53% | NC_030847 | |
156.5 | 701.3 | 35% | 2.843e-38 | 78% | NC_003605 | |
95.2 | 95.2 | 33% | 8.081e-20 | 58% | NC_010736 | |
92.9 | 92.9 | 33% | 3.938e-19 | 57% | NC_014898 | |
92.0 | 92.0 | 33% | 7.42e-19 | 55% | NC_029051 |
Alignments
Brazilian weed virus Y isolate KLL097, complete genome
Range 1: 3657 to 3854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.8 bits(201) | 0.0 | 35/66(53%) | 0/66(0%) | Minus/Plus |
Query 1 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWI 198 RSDCV+R+L+KLKS+V + ++DVRHQS+D+IID+FD+KK TIDF ++ D++F WWI Subject 3657 RSDCVFRTLNKLKSVVGSLDNDVRHQSLDDIIDIFDDKKHTIDFTLDDDVFNPEVSTDTSFDSWWI 3854
Range 1: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.5 bits(336) | 0.0 | 64/65(98%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSDCVYRSLSKLKSLVSTC+DDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4001 RSDCVYRSLSKLKSLVSTCDDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4004 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 52/64(81%) | 0/64(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAIT 195 PPL ECR++HARRVKFFSFNLEIY FLLI+ VND INAL+AYII+ARRY**F+L**TPVH IT Subject 4004 PPLAECRVYHARRVKFFSFNLEIYRLFLLIEQVNDFINALVAYIIIARRY**FKL**TPVHTIT 4195
Range 3: 4005 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 52/64(81%) | 0/64(0%) | Minus/Plus |
Query 3 VIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 194 VI CTGVYQS NH*YLRA MMYA RALM+SLT MRRK+ *ISRLKEKNFTLLAW RHS SGG Subject 4005 VIVCTGVYQSLNH*YLRAMMMYATRALMKSLTCSMRRKRR*ISRLKEKNFTLLAW*TRHSASGG 4196
Range 4: 4005 to 4193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 51/63(81%) | 0/63(0%) | Plus/Minus |
Query 6 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH 194 TT *MS+ PREKSKVLFLQSRNL LSSH+ GQ* HQRS GVHH RT*ILMI*ALI+SCT NH Subject 4005 TTC*MSSLPREKSKVLFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT*ILMI*ALIDSCTHNH 4193
Range 5: 4000 to 4194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 51/65(78%) | 0/65(0%) | Minus/Plus |
Query 5 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 199 E+*L VQE IKA IISIYVR *CTP ER**+H*P+ *EER+ RFRD*RKRTLLFSRG DIQ VV Subject 4000 EE*LCVQESIKA*IISIYVR**CTPPER**NH*PVR*EERDDRFRD*RKRTLLFSRGRLDIQQVV 4194
Range 1: 3809 to 4003 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.2 bits(202) | 0.0 | 38/65(58%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 +SDCVY+ L+K KS+V T E DV HQS+D+I DLF++K+ TIDFEI+ +E SS D TFS+WW Subject 3809 KSDCVYKLLNKFKSVVGTIEQDVYHQSLDDINDLFEDKQLTIDFEIDVQEGNSSTTFDHTFSRWW 4003
Range 1: 4049 to 4243 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.9 bits(197) | 0.0 | 37/65(57%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSD +Y++L+KLKSLV T +DDV HQS+D+I L D+KK TIDFEI+GK+ + + +FSKWW Subject 4049 RSDYLYKTLNKLKSLVRTVDDDVYHQSLDDIESLDDDKKLTIDFEIDGKQAHGCTYKEMSFSKWW 4243
Range 1: 3527 to 3721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.0 bits(195) | 0.0 | 36/65(55%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSDCVY+ L KLK+L+ TCE DV QS+DEI +EK T+DFE++G E S V +STF +WW Subject 3527 RSDCVYKILMKLKNLIGTCEQDVHFQSLDEIQTHLEEKNLTVDFEMDGVETAESLVTESTFQQWW 3721
Nucleotide Sequence (381 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
325.5 | 1661.9 | 25% | 1.39e-88 | 98% | NC_003605 | |
214.6 | 576.3 | 30% | 3.379e-55 | 36% | NC_025254 | |
203.1 | 428.9 | 32% | 9.369e-52 | 38% | NC_030391 | |
203.1 | 482.5 | 46% | 9.489e-52 | 31% | NC_001445 | |
207.7 | 493.2 | 39% | 3.962e-53 | 33% | NC_007913 |
Alignments
Range 1: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.5 bits(704) | 0.0 | 125/126(99%) | 0/126(0%) | Minus/Minus |
Query 2 VGFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 379 V FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD Subject 5063 VRFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 5440
Range 2: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
302.1 bits(653) | 0.0 | 124/125(99%) | 0/125(0%) | Plus/Plus |
Query 1 HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI 375 HP***APNDPV KEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI Subject 5062 HP***APNDPVYKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI 5436
Range 3: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
294.8 bits(637) | 0.0 | 124/125(99%) | 0/125(0%) | Minus/Minus |
Query 1 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM 375 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFF YRIIRCSLSRM Subject 5062 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFVYRIIRCSLSRM 5436
Range 4: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN 379 ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+ Subject 5063 ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD 5440
Range 5: 5064 to 5441 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 3 SLIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSXXXXXXXXXXXXXXAS*DSSS*KNPT 380 SLIVSTE*SG+QRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KN T Subject 5064 SLIVSTE*SGIQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KNRT 5441
Range 6: 5064 to 5345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 93/94(99%) | 0/94(0%) | Minus/Minus |
Query 3 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQG 284 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSL+TGSFGAHYQG Subject 5064 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLYTGSFGAHYQG 5345
Carrot thin leaf virus isolate CTLV-Cs, complete genome
Range 1: 4608 to 4982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 84/125(67%) | 0/125(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES 376 ILD ++R +RY K +++GERIQR+GRVGRNK G+A+RIG+TE G EIPA IATEAAFLCF+YGLPVMT+NVSTS+L NCTVRQAR MQ+FEL PF+M++LV +DG++HPAI+ +L++FKL++S Subject 4608 ILDVDNRCVRYNKTCVSFGERIQRLGRVGRNKPGTALRIGATEKGLVEIPAKIATEAAFLCFSYGLPVMTNNVSTSLLANCTVRQARIMQQFELDPFYMINLVRYDGSMHPAIHDILKKFKLRDS 4982
Range 2: 4607 to 4981 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 67/125(54%) | 0/125(0%) | Minus/Minus |
Query 1 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM 375 +S +LN LR IAGC PS+ T+ + KG SSN CI+RACLTVQ S LV TL V+TG+P +KHKKAASVAI AGIS+ P SV PI A P L PT P+L I SP + Y S S++ Subject 4607 ESLSLNFLRMS*IAGCIDPSYRTKLIM*KGSSSNCCIIRACLTVQFASKLVETLFVITGNP*LKHKKAASVAIFAGISTSPFSVAPILSAVPGLFLPTRPSLCILSPKLTHVLLYLTHLLSTSKI 4981
Range 3: 4614 to 4973 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 46/120(38%) | 0/120(0%) | Minus/Minus |
Query 8 QLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTI 367 + EL + +NCW++ +V +DH E KLLH CL C V E C + CH R + + QEGCFCC+ CWY + FS P T FV+ N S L LT +T +P S++ + Subject 4614 EFELFENVMNCWMHRPIVPN*IDHVEGI*FKLLHYSCLPNCAVRE*TC*DIICHYR*PIAKAQEGCFCCNFCWYLDQSFFSCPNPQCCTRFVSTNSS*PLYPLTKANTCFIVPYTSIINV 4973
Range 4: 4658 to 4975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 38/106(36%) | 0/106(0%) | Plus/Plus |
Query 52 IW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVE 369 +W* + K+ W +Q+W+S D +* GR+TS N NRSSLLV + +C+DK K TR+L+S T++A +* L+ + + R SN + VQ + Subject 4658 LW*EDTKARTSW*KQTWYSTEDWGN*KRTGRDTSKNCNRSSLLVL*LWVTCNDK*CLNKFTRELHS*ASTNNAAI*TRSLLHDQFSSVRWVYASSNS*HSQKVQTQ 4975
Range 5: 4636 to 4887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 32/84(38%) | 0/84(0%) | Plus/Plus |
Query 30 GMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLS 281 G + V +V K + L T LVQ G LK +YQ + QQKQPSC +L *Q Q YS T Q +H C +L+ Subject 4636 GTIKHVLALVRGYKG*DELVETNLVQH*GLGQLKKDWSRYQQKLQQKQPSCALAMGYL**QIMSQQVYSRTAQLGKHE*CSNLN 4887
Wild onion symptomless virus gene for polyprotein, complete cds, isolate: TUR256-1
Range 1: 4372 to 4743 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 80/124(65%) | 0/124(0%) | Plus/Plus |
Query 5 LDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES 376 LDS++RM+ Y K ++++GERIQR+GRVGR+KAG AIRIG TE G E+P+SIATEAAF+CFTYGLPV+ +NV+TS+L + TV+QARTM +FEL+PF+MV+LV DG+VHPAI++ L++FKL++S Subject 4372 LDSDNRMMNYRKIAVSFGERIQRLGRVGRHKAGCAIRIGHTEKGLSEVPSSIATEAAFMCFTYGLPVIANNVTTSLLAHATVKQARTMAQFELTPFYMVNLVRFDGSVHPAIHNALKKFKLRDS 4743
Range 2: 4374 to 4748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 70/125(56%) | 0/125(0%) | Minus/Minus |
Query 7 SLDSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLS 381 S +S NLN L IAGCT PS T+ T+ G SSN +VRACLTV S LV+TL MTGSP VKH AASVAI G S P SV P+R+A PAL PTLP+ IRSP + F II SLS Subject 4374 SSESLNLNFFSAL*IAGCTDPSNLTKLTM*NGVSSNCAMVRACLTVACASKLVVTLFAMTGSP*VKHINAASVAILLGTSLSPFSVCPMRIAHPALCLPTLPSRCIRSPKLTAIFR*FIILLSLS 4748
Range 3: 4375 to 4734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 46/120(38%) | 0/120(0%) | Minus/Minus |
Query 8 QLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTI 367 QLEL Q +NCWV+ ++ + VDH ER +LKL H CL V E AC +V +D S+ ET + FCC W F F SY + V+ N + SL SL+ +++L I H ++ + Subject 4375 QLELFQRIMNCWVHRSIKSH*VDHVERCKLKLRHGACLLNRCVREQACGYVIRYDW*SISETHKCRFCCYTTWDFT*SFFRVSYADRAPCLVSANSAESLYSLSKTNSYLPIIHHPIIAV 4734
Range 1: 4635 to 5009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 83/125(66%) | 0/125(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES 376 +LD ++R++RY KKSI+YGERIQR+GRVGRNK G+A+RIG TE G +IP IATEAAFLCFTYGLPVMT+ VSTS+L CTV+QARTMQ+FELSPF+ V LV DGT+H I LL+ ++L++S Subject 4635 VLDIDNRLVRYTKKSISYGERIQRLGRVGRNKPGAALRIGFTEKGLTQIPPIIATEAAFLCFTYGLPVMTNGVSTSLLAMCTVKQARTMQQFELSPFYTVALVRFDGTMHQEIFRLLKSYRLRDS 5009
Range 2: 4640 to 5008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 69/123(56%) | 0/123(0%) | Minus/Minus |
Query 7 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLS 375 +S +L L I+ C VPS T +T+ GD+SN CIVRACLTV + S LV T LV+TG P VKH+KAASVAI GI P SV PIR A P L RPT P L I SP ++LFF YR R S+S Subject 4640 ESRSL*LLSNRKISWCIVPSNRTNATV*NGDNSNCCIVRACLTVHIASKLVDTPLVITGKP*VKHRKAASVAIIGGI*VSPFSVNPIRSAAPGLFRPTRPNL*ILSP*LMLFFVYRTRRLSMS 5008
Range 3: 4778 to 4972 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 25/65(38%) | 0/65(0%) | Plus/Plus |
Query 145 NTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN 339 NTS NRNRSS +FH+ + +D + + T ++ + TDDA V* +P L+ G+ R + P N Subject 4778 NTSNNRNRSSFSMFHLWFASYD*RCVNELTSDVHCQASTDDATV*IIPVLHSGVGSI*RDNAPGN 4972
Range 4: 4670 to 4747 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 8/26(31%) | 0/26(0%) | Plus/Plus |
Query 37 KEKYHIW*ANPKSGKGWAQQSWFSHS 114 +E++ +W + K G W++Q+ S S Subject 4670 EEEHQLWRKDSKIGASWSKQTRSSTS 4747
Range 1: 4662 to 5033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.7 bits(447) | 0.0 | 83/124(67%) | 0/124(0%) | Plus/Plus |
Query 5 LDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES 376 LD ++R + Y KKS+++GERIQR+GRVGR K G A+RIG+TE G EIP+ IATEAAF+CFTYGLPVMTS V+TS+LGNCTVRQARTMQ FELSPF+ V+LV +DGT+HP+I+ +L +KL++S Subject 4662 LDCDNRCMVYTKKSVSFGERIQRLGRVGRQKPGMALRIGTTEKGLMEIPSVIATEAAFMCFTYGLPVMTSGVTTSLLGNCTVRQARTMQNFELSPFYTVNLVRYDGTMHPSIHKILLAYKLRDS 5033
Range 2: 4688 to 5032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 72/115(63%) | 0/115(0%) | Minus/Minus |
Query 31 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAY 375 +S +L R L + GC VPS+ T+ T+ GDSS FCIVRACLTVQLPS LV+T LV+TG+PYVKH AASVAI GIS P SV+PIR A P RPTLP+LWIRSP + LF Y Subject 4688 ESLSL*AKRILCMLGCIVPSYRTKFTV*NGDSSKFCIVRACLTVQLPSKLVVTPLVITGNPYVKHMNAASVAITDGISINPFSVVPIRSAIPGFCRPTLPSLWIRSPKLTLFLVY 5032
Range 3: 4662 to 4934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 30/91(33%) | 0/91(0%) | Minus/Minus |
Query 5 KLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIK 277 K+LH CL +CT+A+ C H CH+ + +C+ E C CCD W F S + F++ N LDSL +T + S++ +K Subject 4662 KILHCACLPHCTIAK*TCCHTTCHNWQPICKAHERCLCCDHRWNFH*SFLCCSNSERHSWFLSTNSPKPLDSLPKTNTLFSVHHASIVAVK 4934
Range 4: 4802 to 4969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 22/56(39%) | 0/56(0%) | Plus/Plus |
Query 145 NTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGT 312 N+ +RNR S+ V +I + +DK + K T QLYS+ T +AK * + L+ + GT Subject 4802 NSICDRNRGSVHVLYIWVASYDKWCDNKFTWQLYSEASTHNAKF*TITILHSKFGT 4969
Nucleotide Sequence (275 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
157.3 | 851.8 | 25% | 3.36e-38 | 84% | NC_003605 | |
69.3 | 69.3 | 25% | 1.023e-11 | 44% | NC_004426 | |
69.3 | 69.3 | 25% | 1.023e-11 | 43% | NC_020896 | |
72.1 | 72.1 | 21% | 1.521e-12 | 44% | NC_014536 | |
78.0 | 78.0 | 21% | 2.449e-14 | 53% | NC_021065 |
Alignments
Range 1: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 63/70(90%) | 0/70(0%) | Plus/Minus |
Query 3 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA 212 CDVAVLNH VR+GVCDLTLR+YNFTIYP PNNEYTVSP*TKFSYDF*RVQYV+A SWG*F*VCPC VPTA Subject 1217 CDVAVLNHAVREGVCDLTLRVYNFTIYPPPNNEYTVSP*TKFSYDF*RVQYVSARSWG*F*VCPCFVPTA 1426
Range 2: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 62/70(89%) | 0/70(0%) | Minus/Plus |
Query 3 GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 212 G WH+TWTDSELSPGSSGYVLNSSKIIG+FGLRRHSIFVVRGRV G++IDSQSKVTH++THRMVQYSDVA Subject 1217 GGWHKTWTDSELSPGSSGYVLNSSKIIGEFGLRRHSIFVVRGRVYGKIIDSQSKVTHTLTHRMVQYSDVA 1426
Range 3: 1218 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 63/70(90%) | 0/70(0%) | Minus/Plus |
Query 2 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH 211 AVGT+HGQTQNYPQD A TY*TRQKS*ENLV*GDTVYSLLG G MVKL* RKVRSHTPSRT WFNTATSH Subject 1218 AVGTKHGQTQNYPQDLADTY*TRQKS*ENLV*GDTVYSLLGGGYMVKL*TRKVRSHTPSRTAWFNTATSH 1427
Range 4: 1222 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 59/69(86%) | 0/69(0%) | Minus/Plus |
Query 1 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT 207 LAQNMDRLRTIPRI R+RIELVKNHR+IWFKATQYIRC*G G W*+YR AK*GHT HAP+GSIQRRRT Subject 1222 LAQNMDRLRTIPRI*RIRIELVKNHRRIWFKATQYIRC*GEGIW*NYRLAK*GHTHPHAPHGSIQRRRT 1428
Range 5: 1216 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 62/71(87%) | 0/71(0%) | Plus/Minus |
Query 1 RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP 213 RATSLY*T+RCV CVTLLCESI P TLPLTTNILCRLKPN PMIFDEFNT PLDPGDSSESVHVLCQ P Subject 1216 RATSLY*TMRCVRVCVTLLCESIILPYTLPLTTNILCRLKPNSPMIFDEFNTYPLDPGDSSESVHVLCQPP 1428
Range 6: 1221 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.6 bits(270) | 0.0 | 58/69(84%) | 0/69(0%) | Plus/Minus |
Query 2 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN 208 VRRRCIEP GA* V*PYFA+L* +H+P P*QRIYCVALNQI L*FLTSSIR R ILGIVLSLSMFCAN Subject 1221 VRRRCIEPCGA*GCV*PYFASL*FYHIPSP*QRIYCVALNQILL*FLTSSIRIR*ILGIVLSLSMFCAN 1427
Range 1: 850 to 1053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 30/68(44%) | 0/68(0%) | Minus/Plus |
Query 12 VGCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYS 215 V W T L G SG VLNSS GKFG ++F+VRG +G++ D++SK+T + RM+QYS Subject 850 VHSWGNTVDSHMLQRGDSGVVLNSSVCRGKFGRNWDNLFIVRGEYEGKIFDARSKLTETTALRMIQYS 1053
Range 1: 1278 to 1481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 29/68(43%) | 0/68(0%) | Minus/Plus |
Query 3 WHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 206 + R++ + S GSSG V N K IG G ++ IF+VRGR +G++ D++ +VT S+ RM Y DVA Subject 1278 FERSFNTGQFSYGSSGLVFNPRKAIGTIGRAKNDIFIVRGRHEGKLYDARQRVTESVMLRMQHYMDVA 1481
Range 1: 911 to 1087 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 26/59(44%) | 0/59(0%) | Minus/Plus |
Query 12 DSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYS 188 D L G+SG++ N G+FG ++ +F+VRGR+DG ++D+QSKV++ + HRM YS Subject 911 DKHLEQGTSGFIFNGELCCGQFGRCKNGMFIVRGRLDGMMVDAQSKVSYHVMHRMHHYS 1087
Sunflower mild mosaic virus isolate Entre Rios, complete genome
Range 1: 1076 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 30/57(53%) | 0/57(0%) | Minus/Plus |
Query 9 LSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD 179 L PGSSG VLN + GK +R +F+VRGR DGE+++++SK +HS+ HRM YSD Subject 1076 LQPGSSGLVLNHKILRGKVSRQRDGMFIVRGRCDGELLEARSKFSHSVVHRMTHYSD 1246
Nucleotide Sequence (316 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
227.7 | 1201.7 | 34% | 2.68e-59 | 81% | NC_003605 | |
97.3 | 97.3 | 27% | 5.053e-20 | 46% | NC_000947 | |
97.3 | 97.3 | 27% | 5.053e-20 | 46% | NC_004752 | |
102.8 | 148.3 | 30% | 1.122e-21 | 40% | NC_011541 | |
98.2 | 98.2 | 26% | 2.679e-20 | 49% | NC_023628 |
Alignments
Range 1: 5660 to 5962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.7 bits(491) | 0.0 | 94/101(93%) | 0/101(0%) | Minus/Plus |
Query 12 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK 314 CKIAYTLSVSPFMIPATINKIDALMAEERQK+EYFQTVTANTCTISNFSISS+GDMIRSRYSTNHSRENLQKLQ VRDTIINFECQAGT DGG+FDMET++ Subject 5660 CKIAYTLSVSPFMIPATINKIDALMAEERQKLEYFQTVTANTCTISNFSISSLGDMIRSRYSTNHSRENLQKLQTVRDTIINFECQAGTSDGGTFDMETAQ 5962
Range 2: 5660 to 5953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.0 bits(465) | 0.0 | 84/98(86%) | 0/98(0%) | Plus/Minus |
Query 21 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 314 LHVEGTP+TSSSLAL+VDDCVSD L*FLQV SRMVC*VSRPDH+ TTNGEV*DC CV C CLEVF LLSFFGH G++LVDCCWDHEGTHRECVCYFA Subject 5660 LHVEGTPITSSSLALKVDDCVSDRL*FLQVFSRMVC*VSRPDHIAKTTNGEV*DCACVGCYCLEVFQLLSFFGH*GVDLVDCCWDHEGTHRECVCYFA 5953
Range 3: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 92/99(93%) | 0/99(0%) | Plus/Minus |
Query 19 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 315 VSMSK PPS VPAWHSKLMIVSLT C+FCRFSLEWFVEYLDLI+SP LLMEKFEIVHVLAVTVWKYS FCRSSAIRASILLIVAGIMKGLTESVYAILH Subject 5659 VSMSKVPPSLVPAWHSKLMIVSLTVCNFCRFSLEWFVEYLDLIISPRLLMEKFEIVHVLAVTVWKYSNFCRSSAIRASILLIVAGIMKGLTESVYAILH 5955
Range 4: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.8 bits(410) | 0.0 | 80/99(81%) | 0/99(0%) | Minus/Plus |
Query 19 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD 315 VQNSIHTLCESLHDPSNNQQD P+GRRTTK GILPNS+S HM+NLKLLH** W +DQVEILNKPF*R+PA+ T+ QRHNHQL VPGWN * G+LRHGD Subject 5659 VQNSIHTLCESLHDPSNNQQDRRPNGRRTTKVGILPNSNSQHMHNLKLLH**SWRYDQVEILNKPF*RKPAEITNGQRHNHQL*VPGWN**WGYLRHGD 5955
Range 5: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 86/99(87%) | 0/99(0%) | Minus/Plus |
Query 20 RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR 316 RAK*HTHSL*VPS*SQQQSTR P*WPKNDK WNTSKQ Q TH QSQTSPLVVL *SGRDTQQTILE+TC+NYK+SETQSST SARLELV GVPSTWR Subject 5658 RAK*HTHSL*VPS*SQQQSTRSTP*WPKNDKSWNTSKQ*QPTHAQSQTSPLVVLAI*SGRDTQQTILEKTCRNYKRSETQSSTLSARLELVMGVPSTWR 5954
Range 6: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.4 bits(370) | 0.0 | 80/99(81%) | 0/99(0%) | Plus/Minus |
Query 20 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 316 SPCRR P H FQPGT+S**LCL* V+ AG L*NGLLSIST*S Q Y*WRSLRL MC L LFGSIP+FVVLRP G +SC*LLLGS*RDSQRVCMLFCT Subject 5658 SPCRRYPHH*FQPGTQS**LCL*PFVISAGFL*NGLLSIST*SYRQDY*WRSLRLCMCWLLLFGSIPTFVVLRPLGRRSC*LLLGS*RDSQRVCMLFCT 5954
Range 1: 5314 to 5565 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 39/84(46%) | 0/84(0%) | Minus/Plus |
Query 63 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFE 314 CK+AYTL I TI+ IDAL+ EERQK EYF+T+T N+ + SNFS+ SI + IR+R+S++H+ EN+ L+ + + F+ Subject 5314 CKVAYTLKTDVMSIQRTIHIIDALIVEERQKQEYFRTITTNSISSSNFSLQSIANAIRARFSSDHTVENISVLENAKAQLCEFK 5565
Range 1: 5181 to 5432 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 39/84(46%) | 0/84(0%) | Minus/Plus |
Query 63 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFE 314 CK+AYTL IP T+ I+ALM ER K E+F + N C+ S FS+SSI +R+RY+TNH+ ENL LQ +D+++ F+ Subject 5181 CKVAYTLQTDAHAIPRTVKIIEALMIAERTKKEHFDSQVGNVCSSSMFSLSSITHALRARYNTNHAVENLSILQTAKDSLLEFK 5432
Range 1: 5255 to 5503 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 43/83(52%) | 0/83(0%) | Minus/Plus |
Query 66 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINF 314 CKIAYTL I T+ ID+L+AEER K EYF+TVT+NT + SNFS+ SI + IRSR++T+H+REN+ L+A + + F Subject 5255 CKIAYTLQTDVTAIQRTVRIIDSLIAEERVKQEYFKTVTSNTVSSSNFSLQSIANAIRSRFATDHTRENIGVLEAAKAQLCEF 5503
Range 2: 5254 to 5487 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 31/78(40%) | 0/78(0%) | Plus/Minus |
Query 82 SLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 315 + A S FS W V + I +L EKF+ V VTV KYS F RSSA+ SI+ V + +V AILH Subject 5254 AFAASSTPMFSRVWSVANRERIAFAML*SEKFDDETVFDVTVLKYSCFTRSSAMSESIIRTVR*MAVTSVCNV*AILH 5487
Narcissus late season yellows virus isolate Marijiniup8, complete genome
Range 1: 5214 to 5462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 41/83(49%) | 0/83(0%) | Minus/Plus |
Query 66 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINF 314 CKIAYTL I T+ ID L+AEER K EYF+TVT+N + SNFS+ SI + IRSR++++H+REN+ L+A + + F Subject 5214 CKIAYTLQTDVTAIQRTVRIIDTLIAEERVKQEYFKTVTSNVVSSSNFSLQSIANAIRSRFASDHTRENIGVLEAAKAQLCEF 5462
Nucleotide Sequence (351 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
203.6 | 1132.2 | 27% | 6.033e-52 | 82% | NC_003605 | |
128.0 | 415.9 | 29% | 3.465e-29 | 33% | NC_001445 | |
128.0 | 257.5 | 29% | 3.516e-29 | 32% | NC_018093 | |
128.0 | 277.2 | 30% | 3.516e-29 | 37% | NC_002509 | |
126.6 | 198.7 | 32% | 9.116e-29 | 51% | NC_001841 |
Alignments
Range 1: 6911 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 79/91(87%) | 0/91(0%) | Minus/Minus |
Query 79 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP 351 CSDPVFPQEAVVH CCHARL YGAG ALIL+*GSN+ANLLSFDRWTEFQ LW+RREVWC+ND+HYVPSF RKYFELRCI K+VFTMSRLNP Subject 6911 CSDPVFPQEAVVHGCCHARLGYGAGYALILK*GSNKANLLSFDRWTEFQFLWERREVWCKNDDHYVPSFARKYFELRCIWKNVFTMSRLNP 7183
Range 2: 6919 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 84/88(95%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 VVIQCFHKKLLSTGVVTLVSDTVL MLLS NKDPTRQIFSPLIGGRNFSFCGNGGKSGVRM+TIMSLPSQGSTLSCVVFG TYSPCLD Subject 6919 VVIQCFHKKLLSTGVVTLVSDTVLVMLLS*NKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMMTIMSLPSQGSTLSCVVFGRTYSPCLD 7182
Range 3: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 90/94(96%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT Subject 6902 GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT 7183
Range 4: 6901 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 77/94(82%) | 0/94(0%) | Plus/Plus |
Query 69 WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY 350 WR+ GS+ETW*IR+S+YNA QSTSL RKGHNG+HS+TRLPSV TK EIPSTDQRREDLP WILI *EH QHRI DERDNT GQQLLVETLDHY Subject 6901 WRTKGSVETW*IRSSKYNATQSTSLRRKGHNGHHSYTRLPSVPTKTEIPSTDQRREDLPCWILISR*EHNQHRIRDERDNTRGQQLLVETLDHY 7182
Range 5: 6912 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.4 bits(383) | 0.0 | 75/90(83%) | 0/90(0%) | Plus/Plus |
Query 80 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 349 GF+RDMVNT F+IQR+SKYFL KEGT*W SF HQTSLR HK+*NSVHRSKERRFA LDPY +IRA PAPY RRA*QH WTTASCGNTGSL Subject 6912 GFSRDMVNTFFQIQRNSKYFLAKEGT*WSSFLHQTSLRSHKN*NSVHRSKERRFALLDPYFKIRA*PAPYPRRA*QHPWTTASCGNTGSL 7181
Range 6: 6903 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 78/93(84%) | 0/93(0%) | Minus/Minus |
Query 71 **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR 349 **SSVSTRSCCP VLSRSS+IRCW CSY IRIQ+GKSSLL*SVDGIS FV TEGSLV*E**PLCPFL KEVL* ALY E RIHHVS EP +R Subject 6903 **SSVSTRSCCPRVLSRSSRIRCWLCSYLEIRIQQGKSSLL*SVDGISVFVGTEGSLV*E**PLCPFLRKEVL*VALYLEERIHHVSTEPLVR 7181
Range 1: 6450 to 6731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 56/94(60%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + ++S HGE+V+ +T LK+LPC+GRDI++I L DFPPFP++L+FR P +++CL+GS FQ KSISST+SETS T PVDNS WKHWI+T Subject 6450 GELTIRSHHGEFVVKDTKTLKLLPCKGRDIVIIRLPKDFPPFPRRLQFRTPTTEDRVCLIGSNFQTKSISSTMSETSATYPVDNSHFWKHWIST 6731
Range 2: 6467 to 6730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 45/88(51%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 V+IQCF K LLSTG V LVSD VLEML W +P +Q S ++G RN + G GGKS ++ MS P QGS+L V +T SP D Subject 6467 VLIQCFQK*LLSTGYVALVSDMVLEMLFVWKFEPIKQTLSSVVGVRNCNLLGKGGKSFGNLMITMSRPLQGSSLRVFVSFTTNSP*CD 6730
Range 3: 6468 to 6728 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 39/87(45%) | 0/87(0%) | Minus/Minus |
Query 88 SDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSR 348 ++PVFP+ V++W C A R+GA +AL LE +N N + R E Q KRREV +D+HYVP+F RK FE C+ + F M R Subject 6468 TNPVFPEMTVINWICCACFRHGA*NALRLEI*TN*TNSVLSRRGAELQPPRKRREVLW*SDDHYVPTFARKQFESFCVLHYEFPMMR 6728
Range 4: 6452 to 6730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 31/93(33%) | 0/93(0%) | Plus/Plus |
Query 72 RSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY 350 R+ I +W IR+ + +Q+ SL R GH+ + LPS S + +P D + L W P EH +H + ++R+ +S Q +ETLD Y Subject 6452 RANNPIASWGIRSEGHKNSQTASLQRSGHSDHQITKGLPSFSEEVAVPHPDD*GQSLFNWFKFPNEEHFKHHVGNKRNISS**QSFLETLD*Y 6730
Range 5: 6466 to 6723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 33/86(38%) | 0/86(0%) | Plus/Plus |
Query 86 NRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTG 343 +R M N+ R Q+ S FL K GT* S +TSL F +S R F L S+ RA AP ++A Q T GNTG Subject 6466 DRIMGNS**RTQKLSNCFLAKVGT**SSDYQRTSLLFRGGCSSAPRRLRTEFV*LVQISKRRAFQAPCRKQAQHIQLITVISGNTG 6723
Sweet potato virus G isolate Jesus Maria, complete genome
Range 1: 7375 to 7656 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 60/94(64%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + ++SRHGE+ + NTTQL + PCE RDI++I + D PPFPQKL+FR P + E+ICLVGS FQDKSI+STVSETSVT V+NS WKHWI T Subject 7375 GELTIKSRHGEFHIKNTTQLNMAPCEERDILIIKMPKDVPPFPQKLRFRQPKENERICLVGSNFQDKSITSTVSETSVTCRVNNSHFWKHWIDT 7656
Range 2: 7392 to 7655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 45/88(51%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 V IQCF K L T VTLVS+TVL +LLSW DPT+QI S G RN SF G GG S ++ +SL S G+ + VVF SP D Subject 7392 VSIQCFQKCELFTLHVTLVSETVLVILLSWKFDPTKQILSFSFG*RNRSF*GKGGTSLGILMINISLSSHGAMFNWVVFLMWNSPWRD 7655
Range 3: 7387 to 7656 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 29/90(32%) | 0/90(0%) | Minus/Minus |
Query 82 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLN 351 C +PV P+ V+H C+ A D LILE ++ N L T+ +LL KR + D+ Y+ F R + +L C+ +M+ LN Subject 7387 CINPVLPKM*VIHSACNTGF*DCARDTLILEI*PHQTNSLILFWLTKSKLLRKRGNILGHFDD*YISLFARCHVQLGCVFDVELSMAGLN 7656
Range 1: 6635 to 6916 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 58/94(62%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + ++SRHGE+V+ NTTQL +LP RD+++I L D PPFPQKL FR P KGE+IC+VGS FQ KSI+S VSETS PV+NS WKHWI+T Subject 6635 GELVIKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMPVENSQFWKHWIST 6916
Range 2: 6652 to 6915 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 46/88(52%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 V+IQCF L STG++ LVS+T+L MLL W DPT QI SP G +FCG GG S I+ SL GS S VVF T SPC D Subject 6652 VLIQCFQN*LFSTGIIVLVSETILVMLLVWKLDPTMQIRSPFSGCLKPNFCGKGGTSFGNRISRRSLSGIGSKCS*VVFLITNSPCRD 6915
Range 3: 6656 to 6913 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 32/86(37%) | 0/86(0%) | Minus/Minus |
Query 91 SDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMS 348 ++PVFP+ V+HW LR AL LE G + AN +F R E Q LWK +V D + + R L C+ H TMS Subject 6656 ANPVFPKLTVLHWHYCTSLRDYTRYALGLEIGPHHANSFTFLRLPETQFLWKGWDVLW*PD*QKISVWNR*QV*LSCVFNHELTMS 6913
Range 1: 7516 to 7797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.6 bits(270) | 0.0 | 59/94(63%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + ++SRHGE+V+ NTTQL + PC RDI++I + D PPFPQ+LKFR P + E+ICLVGS FQDKSI+ST+SETSVT V NS WKHWI T Subject 7516 GTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIRMPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWIDT 7797
Range 2: 7542 to 7796 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 43/85(51%) | 0/85(0%) | Minus/Minus |
Query 96 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSP 350 V IQCF K T VTLVS+ VL + LS DPT+QI S G NF CGNGG S ++ MSL +QG S VVF T SP Subject 7542 VSIQCFQKCEFGT*HVTLVSEIVLVIDLS*KFDPTKQILSFSFGTLNFRRCGNGGISLGILMMSMSLSAQGFIPS*VVFLMTNSP 7796
Nucleotide Sequence (326 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
183.9 | 904.2 | 33% | 4.552e-46 | 79% | NC_003605 | |
106.5 | 152.9 | 37% | 9.314e-23 | 54% | NC_018093 | |
111.5 | 159.3 | 23% | 2.831e-24 | 32% | NC_030293 | |
102.8 | 102.8 | 24% | 1.182e-21 | 56% | NC_010736 | |
102.8 | 148.3 | 38% | 1.182e-21 | 50% | NC_001616 |
Alignments
Range 1: 4055 to 4294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 76/80(95%) | 0/80(0%) | Plus/Plus |
Query 3 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK 242 C+DDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+ Subject 4055 CDDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE 4294
Range 2: 4055 to 4294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 64/80(80%) | 0/80(0%) | Minus/Minus |
Query 3 FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA 242 FGCH RSCFTSERHEVP CSVVCH VAS+QLVVPPL ECR++HARRV+FFSFNLEIY FLLI+ +ND INAL+AYII+A Subject 4055 FGCHTRSCFTSERHEVPFCSVVCHCVASHQLVVPPLAECRVYHARRVKFFSFNLEIYRLFLLIEQVNDFINALVAYIIIA 4294
Range 3: 4053 to 4292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 64/80(80%) | 0/80(0%) | Plus/Plus |
Query 1 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 240 RA MMYA RALM+SL MRRK+ *ISRLKEKN TLLAW RHS SGGTTNW EAT+WHTTEQ+GTS*RSLVKQLR WQP Subject 4053 RAMMMYATRALMKSLTCSMRRKRR*ISRLKEKNFTLLAW*TRHSASGGTTNWCEATQWHTTEQKGTS*RSLVKQLRVWQP 4292
Range 4: 4053 to 4289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 63/79(80%) | 0/79(0%) | Minus/Minus |
Query 1 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT 237 LP SQLFHE*TS*SA LFCSVP CCL PIGCP T *MS+ PREKSKVLFLQSRNL LSSH+ Q* HQRS GVHH RT Subject 4053 LPHSQLFHE*TS*SALLFCSVPLCCLAPIGCPTTC*MSSLPREKSKVLFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT 4289
Range 5: 4054 to 4293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 63/80(79%) | 0/80(0%) | Plus/Plus |
Query 2 VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ 241 VR *CTP ER**+H* + *EER+ RFRD*RKRTLLFSRG DIQ V GQPIG RQH+GTLQNR ALHDVHS*NSCE GS+ Subject 4054 VR**CTPPER**NH*PVR*EERDDRFRD*RKRTLLFSRGRLDIQQVVGQPIGARQHNGTLQNRRALHDVHS*NSCECGSR 4293
Sweet potato virus G isolate Jesus Maria, complete genome
Range 1: 4531 to 4764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 43/78(55%) | 0/78(0%) | Plus/Plus |
Query 3 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA 236 C V HQS+D+I + F+EKK TIDFE++ E + ++ D+TF W NQL R NT+ HYRTEGHFM FTR A SVA Subject 4531 CGGPVYHQSLDDITNEFEEKKLTIDFELQSDESHINQECDATFDTWWKNQLARNNTIPHYRTEGHFMEFTRANAVSVA 4764
Pecan mosaic-associated virus isolate LA, complete genome
Range 1: 3265 to 3495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 44/77(57%) | 0/77(0%) | Plus/Plus |
Query 6 EDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA 236 +D + QS+D+I D+ EKK+TIDF +EG E +S+V ++TF +W +NQL+ GNT+ HYR+EGHFM FTRETAA VA Subject 3265 DDCMTFQSLDDISDVLTEKKQTIDFTLEGAESNTSQVGNTTFGQWWENQLMSGNTLPHYRSEGHFMRFTRETAADVA 3495
Range 2: 3265 to 3492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 24/76(32%) | 0/76(0%) | Minus/Minus |
Query 6 HARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIIL 233 + R C SE H+V L S+V RV+++ L+ PPL+E + + R V + EI FL + + +++ L + I+ Subject 3265 YIRCCLPSEPHKVTLRSIVR*RVSTH*LIFPPLSEGCVPNLRCVALCTLECEIDRLFLFREHVANVVKTLKRHAII 3492
Range 1: 3866 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 43/77(56%) | 0/77(0%) | Plus/Plus |
Query 6 EDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA 236 E DV HQS+D+I DLF++K+ TIDFEI+ +E SS D TFS+W DNQL R NT+ HYR G F+ F+R A+ VA Subject 3866 EQDVYHQSLDDINDLFEDKQLTIDFEIDVQEGNSSTTFDHTFSRWWDNQLSRNNTVGHYRIGGEFIEFSRSNASIVA 4096
Range 1: 3641 to 3865 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 41/75(55%) | 0/75(0%) | Plus/Plus |
Query 12 DVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA 236 +VRHQS+D++I FDE+ E IDFE+ +S V+D+ FS W D Q+ G+T+ HYRTEGHFM FTR TA VA Subject 3641 EVRHQSLDDVIKNFDERNEIIDFELSEDTIRTSSVLDTKFSDWWDRQIQMGHTLPHYRTEGHFMEFTRATAVQVA 3865
Nucleotide Sequence (188 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
104.6 | 563.3 | 26% | 6.191e-23 | 62% | NC_003605 | |
57.9 | 57.9 | 26% | 1.149e-08 | 44% | NC_021065 | |
53.3 | 53.3 | 25% | 2.752e-07 | 45% | NC_004426 | |
51.9 | 51.9 | 25% | 7.136e-07 | 45% | NC_010735 | |
54.7 | 54.7 | 24% | 1.061e-07 | 43% | NC_014536 |
Alignments
Range 1: 1277 to 1417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 41/47(87%) | 0/47(0%) | Minus/Minus |
Query 2 AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ 142 AVLNH VR+GVCDL+LR+YNFTIYP PNNEYT SP*TKFSYDF*RVQ Subject 1277 AVLNHAVREGVCDLTLRVYNFTIYPPPNNEYTVSP*TKFSYDF*RVQ 1417
Range 2: 2570 to 2608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 8/13(62%) | 0/13(0%) | Minus/Minus |
Query 121 VWAVCSLY*TIRC 159 VW CS Y T RC Subject 2570 VWMKCSQYITSRC 2608
Range 3: 1276 to 1419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 39/48(81%) | 0/48(0%) | Plus/Plus |
Query 1 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR 144 IELVKNHR+IWFKATQYIRC*G G W*+YR AK GHT HAP+GSIQR Subject 1276 IELVKNHRRIWFKATQYIRC*GEGIW*NYRLAK*GHTHPHAPHGSIQR 1419
Range 4: 1277 to 1420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 39/48(81%) | 0/48(0%) | Plus/Plus |
Query 2 LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE 145 LNSSKIIG+FGLRR SIFVVRGRV G++IDSQ KVTH++THRMVQYS+ Subject 1277 LNSSKIIGEFGLRRHSIFVVRGRVYGKIIDSQSKVTHTLTHRMVQYSD 1420
Range 5: 1278 to 1418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 41/47(87%) | 0/47(0%) | Plus/Plus |
Query 3 *TRQKS*ENLV*GDAVYSLLGVG*MVKL*IRKERSHTPSRTVWFNTA 143 *TRQKS*ENLV*GD VYSLLG G MVKL* RK RSHTPSRT WFNTA Subject 1278 *TRQKS*ENLV*GDTVYSLLGGGYMVKL*TRKVRSHTPSRTAWFNTA 1418
Sunflower mild mosaic virus isolate Entre Rios, complete genome
Nucleotide Sequence (159 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
94.5 | 482.0 | 14% | 6.188e-20 | 76% | NC_003605 | |
62.2 | 62.2 | 32% | 2.966e-10 | 67% | NC_014898 | |
69.3 | 69.3 | 31% | 2.045e-12 | 65% | NC_030847 | |
63.1 | 63.1 | 31% | 1.592e-10 | 55% | NC_009995 | |
62.2 | 62.2 | 30% | 2.966e-10 | 62% | NC_017824 |
Alignments
Range 1: 3995 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(204) | 0.0 | 49/51(96%) | 0/51(0%) | Plus/Plus |
Query 5 SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 157 SERSDCVYRSLSKLKSLVST +DDVRHQSVDEIIDLFDEKKETIDFEIEGK Subject 3995 SERSDCVYRSLSKLKSLVSTCDDDVRHQSVDEIIDLFDEKKETIDFEIEGK 4147
Range 2: 3992 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 41/52(79%) | 0/52(0%) | Minus/Minus |
Query 2 FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL 157 FSFNLEIY FLLI+ VND INAL+AYII+ARRY**F+L**TPVH IT LT+ Subject 3992 FSFNLEIYRLFLLIEQVNDFINALVAYIIIARRY**FKL**TPVHTITPLTI 4147
Range 3: 3996 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 41/51(80%) | 0/51(0%) | Plus/Plus |
Query 6 VREVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK 158 VR VI CTGVYQS NH*YLRA MMYA RALM+SLT MRRK+ *ISRLKEK Subject 3996 VRGVIVCTGVYQSLNH*YLRAMMMYATRALMKSLTCSMRRKRR*ISRLKEK 4148
Range 4: 3996 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 40/51(78%) | 0/51(0%) | Minus/Minus |
Query 6 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFSH 158 LFLQSRNL LSSH+ GQ* HQRS GVHH R+*ILMI*ALI+SCT NH SH Subject 3996 LFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT*ILMI*ALIDSCTHNHSSH 4148
Range 5: 3997 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 39/51(76%) | 0/51(0%) | Plus/Plus |
Query 7 *EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR 159 *E+*L VQE IKA IISIY R *CTP ER**+H*P+ *EER+ RFRD*RKR Subject 3997 *EE*LCVQESIKA*IISIYVR**CTPPER**NH*PVR*EERDDRFRD*RKR 4149
Range 1: 4043 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.2 bits(132) | 0.0 | 34/51(67%) | 0/51(0%) | Plus/Plus |
Query 5 SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 157 SERSD +Y++L+KLKSLV T +DDV HQS+D+I L D+KK TIDFEI+GK Subject 4043 SERSDYLYKTLNKLKSLVRTVDDDVYHQSLDDIESLDDDKKLTIDFEIDGK 4195
Brazilian weed virus Y isolate KLL097, complete genome
Nucleotide Sequence (431 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
303.9 | 1449.5 | 25% | 5.149e-82 | 77% | NC_003605 | |
199.5 | 306.1 | 26% | 1.448e-50 | 45% | NC_030293 | |
180.2 | 379.2 | 32% | 8.996e-45 | 35% | NC_002509 | |
183.4 | 261.9 | 48% | 9.739e-46 | 57% | NC_029051 | |
183.4 | 303.8 | 18% | 9.739e-46 | 47% | NC_001445 |
Alignments
Range 1: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.9 bits(657) | 0.0 | 126/129(98%) | 0/129(0%) | Plus/Plus |
Query 43 VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 429 VW INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAE+G Subject 7376 VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEKG 7762
Range 2: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 108/129(84%) | 0/129(0%) | Minus/Minus |
Query 43 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN 429 SFFGFQKRV IDDA+CYRCGVFHDVFC+CFSV AALLVGSHQWFEE LFLFVCLQV*L+HHALTLDCVLC+ELACA PHCFQVAFQLTC+P +LFGLKLYC+ E*VCH*FVY EGF W I++IY PN Subject 7376 SFFGFQKRVTIDDAYCYRCGVFHDVFCKCFSV*AALLVGSHQWFEEFLFLFVCLQV*LEHHALTLDCVLCHELACAFPHCFQVAFQLTCEPLILFGLKLYCIPE*VCH*FVYLEGFPWRAINEIYASPN 7762
Range 3: 7375 to 7761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.1 bits(557) | 0.0 | 122/129(95%) | 0/129(0%) | Minus/Minus |
Query 42 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT 428 P SAF+NVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRY+SNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM QT Subject 7375 PFSAFRNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYNSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT 7761
Range 4: 7378 to 7764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 103/129(80%) | 0/129(0%) | Plus/Plus |
Query 45 LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS 431 LGRHKS+ *+ K TLQ+KQISDR IR STVS+QT +V KS+ERQLESSGE+HKPTR+KAHSQG*VHDV IPANTRRGKG+LQTTDGSLPEEPL+QRSI+KRHHEILHTDNS HRRL HV ESR+RS Subject 7378 LGRHKSH**HAKGTLQDKQISDRLIRGCSTVSVQTG*VVRKSVERQLESSGEKHKPTRDKAHSQG*VHDVRVIPANTRRGKGILQTTDGSLPEEPLKQRSIYKRHHEILHTDNSRHRRL*HVSESRKRS 7764
Range 5: 7377 to 7763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 107/129(83%) | 0/129(0%) | Plus/Plus |
Query 44 FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE 430 FG *I I Q NPS+*TN**QTYS QYSF+PN+ +G QV+*KAT*KQWG+AQANS*QSTQSRVSA*C SYTCKHTKRKR+SSNH*WEPTRRAA*TEKH QKTS*NTPHR*Q ASSI TRF*KPKKE Subject 7377 FGEA*ISLIARQGNPSR*TN**QTYSGMQYSFSPNRMSGSQVS*KAT*KQWGKAQANS*QSTQSRVSA*CSSYTCKHTKRKRNSSNH*WEPTRRAA*TEKHLQKTS*NTPHR*Q*ASSIVTRF*KPKKE 7763
Range 6: 7377 to 7637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 67/87(77%) | 0/87(0%) | Minus/Minus |
Query 44 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK 304 VV*R PFPLRVFAGI +TSCTYP*LCAL RVGLC SPLLSSCLS DL+T VW ETVL RI LSLICL *RV L Y**DL PK Subject 7377 VV*RIPFPLRVFAGITRTSCTYP*LCALSRVGLCFSPLLSSCLSTDLRTTHPVWTETVLHPRISLSLICLS*RVPLACY**DLCLPK 7637
Pecan mosaic-associated virus isolate LA, complete genome
Range 1: 6583 to 6966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 78/128(61%) | 0/128(0%) | Plus/Plus |
Query 43 VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEE 426 VW ++ L + TP++ FKI+K++TDLF D+++FQ ++ WF +QL GNLKAV +S+SQLVTKH VKGKCM+F LYL TH EE +F+ MGAY KSRLNREAF+KD++KYS PITVG VD D F A E Subject 6583 VWGSLELSDGTPKDQFKISKIITDLFSDSMKFQGLEESWFMAQLSGNLKAVARSSSQLVTKHVVKGKCMLFSLYLSTHPEENAYFQQYMGAYGKSRLNREAFSKDLLKYSKPITVGQVDADAFEMATE 6966
Range 2: 6582 to 6794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 32/71(45%) | 0/71(0%) | Minus/Minus |
Query 42 NIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT 254 N +H P T CFVT+ L L TAFK P N NH S *N S N+SV IL S GV + QT Subject 6582 NSIHFPFTTCFVTN*LELRATAFKFPLNCAINHDSSRP*NFMLSLNKSVMIFDILNWSFGVPSLNSRLPQT 6794
Range 1: 7112 to 7492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.2 bits(387) | 0.0 | 69/127(54%) | 0/127(0%) | Plus/Plus |
Query 46 WVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEE 426 W ++N+ S P FK++KL++DL AV Q++Q+ W QL GNLKA+ SQLVTKHTVKGKC MF+LYL+ H+E +E+F+P++G YQKS+LNREA+ KD++KY+TPI G +DCD F K E Subject 7112 WGSLNIQASQPSGLFKVSKLISDLDSTAVYAQTQQNRWMFEQLNGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVE 7492
Range 2: 7156 to 7491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 53/112(47%) | 0/112(0%) | Minus/Minus |
Query 90 SSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFIL 425 S+ F N SQS P IGV YF SF AS LF P G K S +SSC RY SNI H PLTVCFVTSWL AF+ P + H C TA +RS +L L Subject 7156 STVFSNRSQSMFPASIGVAYFRRSFAYASRLSLLF*YWPSIGWKYSRASSCNLRYKSNI*HFPLTVCFVTSWLGQCAIAFRFPLSCSNIHRFCWVCA*TAVLSRSEISLLTL 7491
Range 3: 7154 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 23/61(38%) | 0/61(0%) | Minus/Minus |
Query 88 LQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFE 270 L++ +KH + +CVLC++LA A+ + F V +L P +L GL + C + V * YFE Subject 7154 LEIQVKHLTFSFNCVLCHKLARAVCYRF*VPVELLEHPPILLGLCVDCRAVEV*D*LAYFE 7336
Range 4: 7382 to 7435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 8/18(44%) | 0/18(0%) | Minus/Minus |
Query 316 VFHDVFCECFSVQAALLV 369 +F + C CFS++ ALL+ Subject 7382 IFQKILCICFSIEFALLI 7435
Range 5: 7155 to 7433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 33/93(35%) | 0/93(0%) | Plus/Plus |
Query 89 SK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*N 367 SK* +* QT + Q + P++ G + T*K+ A A+ *QSTQ + + CL+ + S SN W +RA EKH Q+ *N Subject 7155 SK*AS*SQTSTARQSTHKPSRIGGCSSSSTGT*KR*HTALASL*QSTQLKENVRCLTCISSCMMKHESISNRCWASIKRANSIEKHMQRIF*N 7433
Range 1: 6875 to 7249 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 74/125(59%) | 0/125(0%) | Plus/Plus |
Query 46 WVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKA 420 W + L +S P + FK++KLV+DL D V QSK W +L GNL+AV +QLVTKH VKGKC +FE+YLQTH+EE++FFKPLMGAY KS+LNREA+ KD++KY++PITVG VDCD F +A Subject 6875 WGDMRLRDSAPIDLFKVSKLVSDLESDFVHTQSKTHYWLRERLHGNLRAVASMENQLVTKHVVKGKCSLFEIYLQTHDEERKFFKPLMGAYGKSKLNREAYIKDLLKYASPITVGEVDCDIFEQA 7249
Range 2: 7006 to 7248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 46/81(57%) | 0/81(0%) | Minus/Minus |
Query 177 AFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLP 419 A +SQST PTVIG Y S + AS F LF APISGLKN SSSCVC+ SN HLP T C VT+W + TA KLP Subject 7006 ACSKISQSTSPTVIGEAYLSKSLIYASRFNLLFPYAPISGLKNFRSSSCVCK*ISNREHLPFTTCLVTNWFSIDATARKLP 7248
Range 1: 6927 to 7301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 75/125(60%) | 0/125(0%) | Plus/Plus |
Query 46 WVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKA 420 W ++ L P+ PF I KL+TDL G+ V QSK W +L+GNLKAVG QLVTKH VKGKC +FE YL TH EE EFF+PLMGAYQKS LN++A+ KD+MKYS PI VG VDCD F +A Subject 6927 WGSLQLKRDIPQSPFTICKLLTDLDGEFVYTQSKTTHWLRDRLEGNLKAVGACPGQLVTKHVVKGKCTLFETYLLTHPEEHEFFRPLMGAYQKSALNKDAYVKDLMKYSKPIVVGAVDCDQFERA 7301
Range 2: 7172 to 7306 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 28/45(62%) | 0/45(0%) | Minus/Minus |
Query 291 SSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKN 425 S+A N SQST PT IG EYF+ S ASLF+ LFW API G KN Subject 7172 STARSN*SQSTAPTTIGFEYFIRSLTYASLFRALFWYAPIKGRKN 7306
Range 3: 6944 to 7129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 29/62(47%) | 0/62(0%) | Minus/Minus |
Query 63 MHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLI 248 +HLPLT C VT+ PTAFK P N + LD* T SP+RSV++L I+ G G+ L+ Subject 6944 VHLPLTTCLVTNCPGQAPTAFKFPSNLSLSQCVVLD*V*TNSPSRSVSSLQIVNGLCGMSLL 7129
Nucleotide Sequence (203 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
153.5 | 690.0 | 32% | 2.496e-37 | 76% | NC_003605 | |
93.4 | 93.4 | 33% | 2.804e-19 | 57% | NC_010736 | |
90.2 | 90.2 | 33% | 2.547e-18 | 54% | NC_029051 | |
91.6 | 91.6 | 33% | 9.894e-19 | 52% | NC_030847 | |
89.8 | 89.8 | 32% | 3.491e-18 | 55% | NC_014898 |
Alignments
Range 1: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.5 bits(331) | 0.0 | 63/67(94%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 RSDCVYRSLSKLKSLVSTC+DDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N Subject 4001 RSDCVYRSLSKLKSLVSTCDDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN 4201
Range 2: 4004 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 52/66(79%) | 0/66(0%) | Plus/Minus |
Query 2 VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAIT 199 V PPL ECR++HARRVKFFSFNLEIYR FLLI+ +ND I+AL+AYII+ARRY**F+L**TPVH IT Subject 4004 VVPPLAECRVYHARRVKFFSFNLEIYRLFLLIEQVNDFINALVAYIIIARRY**FKL**TPVHTIT 4201
Range 3: 4005 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 52/66(79%) | 0/66(0%) | Minus/Plus |
Query 1 VIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST 198 VI CTGVYQS NH*YLRA MMYA RALM+SL MRRK *ISRLKEKNFTLLAW RHS SGG+T Subject 4005 VIVCTGVYQSLNH*YLRAMMMYATRALMKSLTCSMRRKRR*ISRLKEKNFTLLAW*TRHSASGGTT 4202
Range 4: 4005 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 51/66(77%) | 0/66(0%) | Plus/Minus |
Query 1 G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH 198 G TT *MS+ PREKSKVLFLQSRNL LSSH+ Q* HQRS GVHH RT*ILMI*ALI+SCT NH Subject 4005 GCPTTC*MSSLPREKSKVLFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT*ILMI*ALIDSCTHNH 4202
Range 5: 4000 to 4200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 51/67(76%) | 0/67(0%) | Minus/Plus |
Query 3 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ 203 E+*L VQE IKA IISIYVR *CTP ER**+H* + *EER RFRD*RKRTLLFSRG DIQ VV Q Subject 4000 EE*LCVQESIKA*IISIYVR**CTPPER**NH*PVR*EERDDRFRD*RKRTLLFSRGRLDIQQVVGQ 4200
Range 1: 3809 to 4009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.4 bits(199) | 0.0 | 38/67(57%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 +SDCVY+ L+K KS+V T E DV HQS D+I DLF++K+ +IDFEI+ +E SS D TFS+WW N Subject 3809 KSDCVYKLLNKFKSVVGTIEQDVYHQSLDDINDLFEDKQLTIDFEIDVQEGNSSTTFDHTFSRWWDN 4009
Range 1: 3527 to 3727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.2 bits(192) | 0.0 | 36/67(54%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 RSDCVY+ L KLK+L+ TCE DV QS DEI +EK ++DFE++G E S V +STF +WW N Subject 3527 RSDCVYKILMKLKNLIGTCEQDVHFQSLDEIQTHLEEKNLTVDFEMDGVETAESLVTESTFQQWWNN 3727
Brazilian weed virus Y isolate KLL097, complete genome
Range 1: 3657 to 3854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.6 bits(195) | 0.0 | 34/66(52%) | 0/66(0%) | Minus/Plus |
Query 5 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWI 202 RSDCV+R+L+KLKS+V + ++DVRHQS D+IID+FD+KK +IDF ++ D++F WWI Subject 3657 RSDCVFRTLNKLKSVVGSLDNDVRHQSLDDIIDIFDDKKHTIDFTLDDDVFNPEVSTDTSFDSWWI 3854
Range 1: 4049 to 4243 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.8 bits(191) | 0.0 | 36/65(55%) | 0/65(0%) | Minus/Plus |
Query 8 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWW 202 RSD +Y++L+KLKSLV T +DDV HQS D+I L D+KK +IDFEI+GK+ + + +FSKWW Subject 4049 RSDYLYKTLNKLKSLVRTVDDDVYHQSLDDIESLDDDKKLTIDFEIDGKQAHGCTYKEMSFSKWW 4243
Nucleotide Sequence (347 letters)
Query ID: | ds2016-121_19 |
Query definition: | No definition line |
Query length: | 287 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
228.3 | 1166.1 | 22% | 2.117e-59 | 78% | NC_003605 | |
133.5 | 249.0 | 22% | 7.554e-31 | 37% | NC_031339 | |
108.7 | 193.8 | 22% | 2.151e-29 | 37% | NC_025821 | |
118.4 | 265.0 | 23% | 9.329e-31 | 33% | NC_018872 | |
116.1 | 294.0 | 21% | 1.747e-30 | 39% | NC_021065 |
Alignments
Range 1: 6251 to 6595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 111/115(97%) | 0/115(0%) | Plus/Plus |
Query 1 ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS 345 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPED+SFIRFLDPLTGKTMDEQVF+DISLVQDAF KERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS Subject 6251 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDYSFIRFLDPLTGKTMDEQVFTDISLVQDAFGKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS 6595
Range 2: 6253 to 6597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.8 bits(480) | 0.0 | 90/115(78%) | 0/115(0%) | Plus/Plus |
Query 3 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL 347 DDGTLFWSCV+ ER+EIRK+ERNG+EKSKIC +VW+QPRR L+HPISGP HRENNG TSI *HKSRPRCL * KTQTP+RR N + HAK +*SLSCQESYHSS+R+RHDPSQLL Subject 6253 DDGTLFWSCVHRERKEIRKDERNGDEKSKIC*HVWVQPRRLLVHPISGPTHRENNG*TSIH*HKSRPRCLW*RKTQTPVRRGN*VRAHAKWD*SLSCQESYHSSSRNRHDPSQLL 6597
Range 3: 6252 to 6596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 92/115(80%) | 0/115(0%) | Plus/Plus |
Query 2 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL 346 RRWNTILELR +RK RNPE+RKEW RKIEDL CM TTQKI+ SSDFWT SQGKQW NKY LT*VSSKMPLV+KDSNS PK K ++STCE LELILSRILPQQ S+*T*PLTTL Subject 6252 RRWNTILELRTQRKERNPERRKEWGRKIEDLLTCMGTTQKITRSSDFWTHSQGKQWMNKYSLT*VSSKMPLVKKDSNSCPKGKLSQSTCEMGLELILSRILPQQLSK*T*PLTTL 6596
Range 4: 6251 to 6466 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 58/72(81%) | 0/72(0%) | Minus/Minus |
Query 1 TKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR 216 TKGILDETYV +YLF+HCFPCE VQKSDE IFWVV IH+ KSSIFR HSFR SGFL FL +RSSKIVFHRR Subject 6251 TKGILDETYVSEYLFIHCFPCEWVQKSDERVIFWVVPIHVNKSSIFRPHSFRLSGFLSFLCVRSSKIVFHRR 6466
Range 5: 6509 to 6595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 25/29(86%) | 0/29(0%) | Minus/Minus |
Query 259 RVVRGHVYLECCCGKILDKISSNSVSHVL 345 RVVRGHVY E CCGKILDKISSN +SHVL Subject 6509 RVVRGHVYFESCCGKILDKISSNPISHVL 6595
Range 6: 6351 to 6596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 64/82(78%) | 0/82(0%) | Minus/Minus |
Query 101 KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHT 346 KSCEGSCL R LLW*DS*QDKL* FAC +F LR GV*VF Y RHLGRDLCQ ILV PLFSL* GPEIG* NLLGC HT Subject 6351 KSCEGSCLFRELLW*DS*QDKL*SHFACALTQFPLRTGV*VFLYQRHLGRDLCQ*ILVHPLFSL*VGPEIG*TSNLLGCTHT 6596
Range 7: 6253 to 6453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 63/67(94%) | 0/67(0%) | Minus/Minus |
Query 3 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV 203 WTRLMS NTCSSIVFPVSGSRNRMNE SSGLYPY+ TNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV Subject 6253 WTRLMSVNTCSSIVFPVSGSRNRMNE*SSGLYPYMLTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV 6453
Euphorbia ringspot virus isolate PV-0902, complete genome
Range 1: 5847 to 6185 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 63/113(56%) | 0/113(0%) | Plus/Plus |
Query 4 TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHN 342 TMEHYFG AYT KGKKSG+T+G G KNR+F+NMYG+NP+DFS +RF+DPLTG T+DE V++ I VQD F + R + ++E ++ + + GI+AY KN AL++D+TPHN Subject 5847 TMEHYFGEAYTAKGKKSGRTRGSGIKNRKFINMYGFNPDDFSAVRFVDPLTGCTLDESVYTSIRDVQDHFGQIREEAINEDLLDRQALGTGIQAYYTKNFQGKALKVDLTPHN 6185
Range 2: 5933 to 6043 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 23/37(62%) | 0/37(0%) | Minus/Minus |
Query 90 TRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTN 200 T L+ T SS V PVSGS NR EKSSGL PY F N Subject 5933 TSLILV*TLSSNVQPVSGSTNRTAEKSSGLNPYXFIN 6043
Range 3: 5846 to 5881 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 10/12(83%) | 0/12(0%) | Minus/Minus |
Query 3 SVYAAPK*CSIV 38 +VYA+PK*CSIV Subject 5846 AVYASPK*CSIV 5881
Range 4: 5850 to 6062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 26/71(37%) | 0/71(0%) | Minus/Minus |
Query 7 LTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFH 219 L K IL + F+ C CE + +S+ *+I W+ S+H YK SI S S L F + SK++FH Subject 5850 LAKVILHISDTSVNTFI*CATCEWIYESNC*KIIWIESVHXYKLSILNSTPSGSSTLLAFCGVCFSKVMFH 6062
Asparagus virus 1 isolate DSMZ PV-0954, complete genome
Range 1: 5897 to 6169 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 49/91(54%) | 0/91(0%) | Plus/Plus |
Query 4 TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNG 276 T+EH+FG AYT+KGK GKT+G GTK RRF+NMYGY+P D+SF+RF+DPLTG+T+D+ ++DI L+QD F+ R ++++ GE++ + + G Subject 5897 TLEHFFGEAYTKKGKTKGKTRGAGTKTRRFINMYGYDPADYSFVRFVDPLTGRTLDDSPYTDIGLIQDHFADVRDEMIANGELDRQRLHLG 6169
Range 2: 6176 to 6247 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 14/24(58%) | 0/24(0%) | Plus/Plus |
Query 271 NGIRAYLVKNLTTAALEIDMTPHN 342 N I AY + N T AL++DMTPHN Subject 6176 NRIEAYFINNATKKALQVDMTPHN 6247
Range 3: 5903 to 6112 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 26/70(37%) | 0/70(0%) | Minus/Minus |
Query 10 LTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVF 219 ++K IL ++ + + + C PC+R+ KS++ I WV+SIH+ KS F S R + FLRI +K +F Subject 5903 ISKMILYQSNICVW*VIKCPPCQRINKSNKRIISWVISIHVDKSPCFCPSSSRLAFCFAFLRICFTKEMF 6112
Pokeweed mosaic virus isolate PkMV-PA, complete genome
Range 1: 5709 to 5978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 53/90(59%) | 0/90(0%) | Plus/Plus |
Query 4 TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRN 273 T+EH+FGAAYTEKGKK GKT GMG KNRRF +MYGY+P D++F+RF+DPLTGKT+D+ ++DI+L+Q AF +ER++++ E E++ + + N Subject 5709 TIEHFFGAAYTEKGKKKGKTHGMGKKNRRFTHMYGYDPTDYTFVRFVDPLTGKTLDDSPYTDINLIQQAFGEERIRMIGEDELDPQQIMN 5978
Range 2: 5985 to 6053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 12/23(52%) | 0/23(0%) | Plus/Plus |
Query 274 GIRAYLVKNLTTAALEIDMTPHN 342 G++AY T ALE+D+TPHN Subject 5985 GLKAYYGNQTTRKALEVDLTPHN 6053
Range 3: 5708 to 5908 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 42/67(63%) | 0/67(0%) | Minus/Minus |
Query 3 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV 203 W RLMS SS VFPV+GS N S G YPY+ N RFF+P+P+VFP F PFSVYAAPK CSIV Subject 5708 WMRLMSVYGESSRVFPVNGSTNLTKV*SVGSYPYMCVNRRFFLPMPWVFPFFLPFSVYAAPKKCSIV 5908
Range 4: 5716 to 5931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 24/72(33%) | 0/72(0%) | Plus/Plus |
Query 11 NTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKD 226 N L +++ R E+ W RK D CM TTQ+I+ SS W + W ++ T SS PLV+++ Subject 5716 NISLVQHTQKRARRKERPMAWARKTGDSHTCMGTTQQITLSSGLWIH*LERPWMTRHTPTLTSSNKPLVKRE 5931
Sunflower mild mosaic virus isolate Entre Rios, complete genome
Range 1: 5969 to 6226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 53/86(62%) | 0/86(0%) | Plus/Plus |
Query 4 TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE 261 ++EHYFG+AY KGKK G +GMG KNRRFVNMYGY+P D+SF+RF+DPLTG TMDE V++DI LVQ+A K R + +++GE+E++ Subject 5969 SIEHYFGSAYNNKGKKKGTVRGMGHKNRRFVNMYGYDPTDYSFVRFVDPLTGATMDESVYADIGLVQEAIGKARQESIADGELEAQ 6226
Range 2: 6245 to 6316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 14/24(58%) | 0/24(0%) | Plus/Plus |
Query 274 GIRAYLVKNLTTAALEIDMTPHNS 345 GIRAY V + T AL +D+TPH S Subject 6245 GIRAYYVNDATKKALLVDLTPHRS 6316
Range 3: 5977 to 6147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 23/57(40%) | 0/57(0%) | Plus/Plus |
Query 12 TLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSI 182 TLFW + +REE R NG++KS +C YV I+ I GP NNGR + Subject 5977 TLFWISLQQQREEERHRAWNGSQKSSLC*YVRIRSYGL*FRSICGPFDGCNNGRIGV 6147
Range 4: 5976 to 6143 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 23/56(41%) | 0/56(0%) | Plus/Plus |
Query 11 NTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNK 178 N IL+ KGR EW KI L IC DT + S D WT + +QWTN+ Subject 5976 NIILDQLTTTKGRRKAPCVEWVTKIVALLICTDTILRTIVSFDLWTL*RVQQWTNR 6143
Range 5: 5972 to 6184 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 28/71(39%) | 0/71(0%) | Minus/Minus |
Query 7 LTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFH 219 L +L+ + +R + FVHC +RV KS+E + +VS+HI K++IF +HS + LPF+ + SKI+F+ Subject 5972 LPNRLLN*SDIRVHRFVHCCTRQRVHKSNETIVRRIVSVHINKATIFVTHSTHGAFLLPFVVVS*SKIMFN 6184