Nucleotide Sequence (433 letters)
Query ID: | ds2016-57_12 |
Query definition: | No definition line |
Query length: | 638 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
63.4 | 117.1 | 32% | 7.395e-19 | 38% | AJ000929.1 | |
63.4 | 117.1 | 32% | 7.395e-19 | 38% | NC_007648.1 | |
58.8 | 102.5 | 26% | 1.597e-14 | 36% | LC144945.1 | |
58.8 | 102.5 | 26% | 1.597e-14 | 36% | NC_031336.1 | |
62.0 | 99.7 | 25% | 1.033e-13 | 39% | AJ877914.1 |
Alignments
Vicia faba double stranded RNA associated with the "447" cytoplasmic male sterility
Sequence ID: AJ000929.1 Length: 17635 Number of Matches: 2
Range 1: 6063 to 6314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 32/84(38%) | 0/84(0%) | Minus/Plus |
Query 2 VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIITAAPNVVRETGTRRIG 253 VMS+E+ +V T L +DEA+M+ TL ++ VE ++LYG+ QI V+D G R SI+ A + R T RIG Subject 6063 VMSIEKCMTQQVNTPTLVLDEASMITWETLSLITGPQVENVYLYGNTLQICVLDMYRTGGSRATKSILEQAGIIRRHYTTHRIG 6314
Range 2: 5889 to 6047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 23/53(43%) | 0/53(0%) | Minus/Plus |
Query 263 VDLLLSNAVGVMAPGGWGKSTHMANIADSDSTMIAYTSSAVDSIKQKLHTLGK 421 + LL A V A GWGKST + + + D T++A TS+AV +I +KL GK Subject 5889 IKTLLEKATAVDAIAGWGKSTEIVKLVNQDCTVVAQTSAAVSNILEKLEQGGK 6047
Vicia faba endornavirus, complete genome
Sequence ID: NC_007648.1 Length: 17635 Number of Matches: 2
Range 1: 6063 to 6314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 32/84(38%) | 0/84(0%) | Minus/Plus |
Query 2 VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIITAAPNVVRETGTRRIG 253 VMS+E+ +V T L +DEA+M+ TL ++ VE ++LYG+ QI V+D G R SI+ A + R T RIG Subject 6063 VMSIEKCMTQQVNTPTLVLDEASMITWETLSLITGPQVENVYLYGNTLQICVLDMYRTGGSRATKSILEQAGIIRRHYTTHRIG 6314
Range 2: 5889 to 6047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 23/53(43%) | 0/53(0%) | Minus/Plus |
Query 263 VDLLLSNAVGVMAPGGWGKSTHMANIADSDSTMIAYTSSAVDSIKQKLHTLGK 421 + LL A V A GWGKST + + + D T++A TS+AV +I +KL GK Subject 5889 IKTLLEKATAVDAIAGWGKSTEIVKLVNQDCTVVAQTSAAVSNILEKLEQGGK 6047
Psophocarpus tetragonolobus endornavirus genomic RNA, complete genome
Sequence ID: LC144945.1 Length: 14623 Number of Matches: 2
Range 1: 4436 to 4642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 25/69(36%) | 0/69(0%) | Minus/Plus |
Query 47 VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIIT 253 +M+ E+ K L VDEATM + + L ++L +E+L L+GD++Q+G+ID+ L G R + + T Subject 4436 IMTYEKLLTQPRECKTLLVDEATMFNWLDLALILPPTIERLILFGDQNQVGLIDSAILGGTRYLEPVTT 4642
Psophocarpus tetragonolobus endornavirus genomic RNA, complete genome
Sequence ID: NC_031336.1 Length: 14623 Number of Matches: 2
Range 1: 4436 to 4642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 25/69(36%) | 0/69(0%) | Minus/Plus |
Query 47 VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIIT 253 +M+ E+ K L VDEATM + + L ++L +E+L L+GD++Q+G+ID+ L G R + + T Subject 4436 IMTYEKLLTQPRECKTLLVDEATMFNWLDLALILPPTIERLILFGDQNQVGLIDSAILGGTRYLEPVTT 4642
Phytophthora endornavirus 1 mRNA for polyprotein
Sequence ID: AJ877914.1 Length: 13883 Number of Matches: 2
Range 1: 4397 to 4582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 29/62(47%) | 0/62(0%) | Minus/Plus |
Query 68 VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVR 253 V SVERA +K+ TK L +DE T VD + + M+ D+VE + L GD QIG +D A G R Subject 4397 VTSVERAVESKIHTKKLAIDECTQVDWLMVHMMCGDEVEIITLAGDSFQIGAVDFSASTGER 4582