Queries
Nucleotide Sequence (373 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
39.6 | 270.6 | 29% | 0.0001524 | 46% | CP000472.1 | |
39.6 | 270.6 | 29% | 0.0001524 | 46% | NC_011566.1 | |
36.8 | 397.7 | 37% | 0.0003965 | 39% | CP000262.1 | |
36.8 | 397.7 | 37% | 0.0003965 | 39% | NC_008024.1 | |
62.5 | 280.3 | 11% | 2.781e-08 | 80% | HQ442266.1 |
Alignments
Shewanella piezotolerans WP3, complete genome
Sequence ID: CP000472.1 Length: 5396476 Number of Matches: 8
Range 1: 2115840 to 2116001 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Minus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject2115840 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 2116001
Range 2: 4150564 to 4150725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Plus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject4150564 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 4150725
Range 3: 74936 to 75097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Minus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject 74936 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 75097
Range 4: 5354969 to 5355130 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Plus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject5354969 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 5355130
Range 5: 2116059 to 2116100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Minus |
Query 261 RQFL*VSALRPYSP 302 RQF+*V LRPYSP Subject2116059 RQFI*VLTLRPYSP 2116100
Range 6: 4150465 to 4150506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Plus |
Query 261 RQFL*VSALRPYSP 302 RQF+*V LRPYSP Subject4150465 RQFI*VLTLRPYSP 4150506
Shewanella piezotolerans WP3, complete genome
Sequence ID: NC_011566.1 Length: 5396476 Number of Matches: 8
Range 1: 2115840 to 2116001 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Minus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject2115840 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 2116001
Range 2: 4150564 to 4150725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Plus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject4150564 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 4150725
Range 3: 74936 to 75097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Minus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject 74936 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 75097
Range 4: 5354969 to 5355130 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Plus |
Query 29 VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP 190 V IVYG D GI*S P LS+L G R SF + RISPL +K+ P Subject5354969 VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP 5355130
Range 5: 2116059 to 2116100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Minus |
Query 261 RQFL*VSALRPYSP 302 RQF+*V LRPYSP Subject2116059 RQFI*VLTLRPYSP 2116100
Range 6: 4150465 to 4150506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Plus |
Query 261 RQFL*VSALRPYSP 302 RQF+*V LRPYSP Subject4150465 RQFI*VLTLRPYSP 4150506
Streptococcus pyogenes MGAS10750, complete genome
Sequence ID: CP000262.1 Length: 1937111 Number of Matches: 12
Range 1: 17700 to 17861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 17700 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 17861
Range 2: 23701 to 23862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 23701 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 23862
Range 3: 82877 to 83038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 82877 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 83038
Range 4: 265960 to 266121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 265960 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 266121
Range 5: 1613964 to 1614125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Minus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject1613964 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 1614125
Range 6: 1367398 to 1367559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Minus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject1367398 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 1367559
Range 7: 17928 to 17969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 17928 GSTTARLKLKGIDG 17969
Range 8: 23929 to 23970 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 23929 GSTTARLKLKGIDG 23970
Range 9: 83105 to 83146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 83105 GSTTARLKLKGIDG 83146
Range 10: 266188 to 266229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 266188 GSTTARLKLKGIDG 266229
Streptococcus pyogenes MGAS10750, complete genome
Sequence ID: NC_008024.1 Length: 1937111 Number of Matches: 12
Range 1: 17700 to 17861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 17700 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 17861
Range 2: 23701 to 23862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 23701 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 23862
Range 3: 82877 to 83038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 82877 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 83038
Range 4: 265960 to 266121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject 265960 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 266121
Range 5: 1613964 to 1614125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Minus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject1613964 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 1614125
Range 6: 1367398 to 1367559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Minus |
Query 23 QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND 184 Q G FH R*N+ IY AKA V + RK G + DT++V +ND Subject1367398 QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND 1367559
Range 7: 17928 to 17969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 17928 GSTTARLKLKGIDG 17969
Range 8: 23929 to 23970 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 23929 GSTTARLKLKGIDG 23970
Range 9: 83105 to 83146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 83105 GSTTARLKLKGIDG 83146
Range 10: 266188 to 266229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 263 GSMVARLKLKGIDG 304 GS ARLKLKGIDG Subject 266188 GSTTARLKLKGIDG 266229
Grapevine leafroll associated virus 1 isolate 12.2.1 coat protein like gene, partial sequence
Sequence ID: HQ442266.1 Length: 544 Number of Matches: 5
Range 1: 439 to 528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 24/30(80%) | 0/30(0%) | Plus/Plus |
Query 100 CQGCFH*SRTKVGGSKTIRYRPSLNHKRCR 189 C GCFH*SRTKVGGSKTIRYRP L+H + R Subject 439 CAGCFH*SRTKVGGSKTIRYRPILHHNKQR 528
Range 2: 438 to 518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 24/27(89%) | 0/27(0%) | Minus/Minus |
Query 99 LWLRLGRYLIVFEPPTFVLD**KHPWQ 179 LW R+GRYLIVFEPPTFVLD**KHP Q Subject 438 LW*RIGRYLIVFEPPTFVLD**KHPAQ 518
Range 3: 431 to 517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 24/29(83%) | 0/29(0%) | Plus/Plus |
Query 92 KAFAKDVFINQERKLGARRRSDTVLVSTI 178 +AFA+DVFINQERKLGAR+RSDTVL TI Subject 431 EAFARDVFINQERKLGARKRSDTVLFFTI 517
Nucleotide Sequence (525 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
393.3 | 2046.2 | 26% | 1.245e-107 | 88% | JQ023131.1 | |
393.3 | 2046.2 | 26% | 1.245e-107 | 88% | NC_016509.1 | |
393.3 | 2070.0 | 26% | 1.245e-107 | 90% | KU674797.1 | |
390.5 | 2023.3 | 26% | 8.298e-107 | 88% | KU674796.1 | |
174.7 | 244.7 | 18% | 7.758e-42 | 43% | AF283103.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 8
Range 1: 2423 to 2932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
393.3 bits(852) | 0.0 | 165/170(97%) | 0/170(0%) | Minus/Plus |
Query 16 VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG 525 VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG Subject 2423 VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG 2932
Range 2: 2423 to 2932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.2 bits(795) | 0.0 | 153/170(90%) | 0/170(0%) | Plus/Minus |
Query 16 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH 525 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDV PE+TYNLLHGMSVSIAY S SIHYHIA SHHFHTQFWYS*AAVSGCQLYW+HQAQLEYFY+ LL*CL QF+NI*V+DVNH+TN RFMITKA V LAVR+VLR LFLKH Subject 2423 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKH 2932
Range 3: 2424 to 2930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
348.8 bits(755) | 0.0 | 150/169(89%) | 0/169(0%) | Plus/Minus |
Query 18 HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A 524 HQQSPVS*P+YVP* +STLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERR SR+NL*SSARNE KHRL L QYTLSHR FAPLPHPVLV*LGCRLWLSALL TSSTTRIFL SSLVL PI+KHLS RRQP*NQ LYDHKSACP GST*CSS+PLS*A Subject 2424 HQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*CSSQPLS*A 2930
Range 4: 2424 to 2933 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 152/170(89%) | 0/170(0%) | Minus/Plus |
Query 15 CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV 524 CLRKR RRT RTA WT AFVIIKR+LV WLTS T*MF NW KH*RR+ *KYSSCA*C Q*S*QPETAA*LYQNWVWKWCE+AM**CIL E *AMLTLIPCRRL*V SG TSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRR LRDIVWL*YRRLLMV Subject 2424 CLRKRLRRTSRTAKWTRAFVIIKRQLVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMV 2933
Range 5: 2425 to 2931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.9 bits(718) | 0.0 | 149/169(88%) | 0/169(0%) | Minus/Plus |
Query 17 A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W 523 A*ERG EEH+VLP GHALL*S*S WF+G*RL LRCF IG STREE +KNIRVVLDV NRADSQRRQPNYTRTGCGSGAK RCDNVYCRR RRCL SFRAEDYKF RE RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVD *GT* GYDTGDC*W Subject 2425 A*ERGCEEHHVLPNGHALL*S*SASWFHG*RLRLRCF*IGASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*W 2931
Range 6: 2722 to 2931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 67/70(96%) | 0/70(0%) | Plus/Minus |
Query 17 PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 226 PSAISGIIT+LCPL VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC Subject 2722 PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 2931
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 8
Range 1: 2423 to 2932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
393.3 bits(852) | 0.0 | 165/170(97%) | 0/170(0%) | Minus/Plus |
Query 16 VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG 525 VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG Subject 2423 VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG 2932
Range 2: 2423 to 2932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.2 bits(795) | 0.0 | 153/170(90%) | 0/170(0%) | Plus/Minus |
Query 16 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH 525 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDV PE+TYNLLHGMSVSIAY S SIHYHIA SHHFHTQFWYS*AAVSGCQLYW+HQAQLEYFY+ LL*CL QF+NI*V+DVNH+TN RFMITKA V LAVR+VLR LFLKH Subject 2423 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKH 2932
Range 3: 2424 to 2930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
348.8 bits(755) | 0.0 | 150/169(89%) | 0/169(0%) | Plus/Minus |
Query 18 HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A 524 HQQSPVS*P+YVP* +STLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERR SR+NL*SSARNE KHRL L QYTLSHR FAPLPHPVLV*LGCRLWLSALL TSSTTRIFL SSLVL PI+KHLS RRQP*NQ LYDHKSACP GST*CSS+PLS*A Subject 2424 HQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*CSSQPLS*A 2930
Range 4: 2424 to 2933 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 152/170(89%) | 0/170(0%) | Minus/Plus |
Query 15 CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV 524 CLRKR RRT RTA WT AFVIIKR+LV WLTS T*MF NW KH*RR+ *KYSSCA*C Q*S*QPETAA*LYQNWVWKWCE+AM**CIL E *AMLTLIPCRRL*V SG TSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRR LRDIVWL*YRRLLMV Subject 2424 CLRKRLRRTSRTAKWTRAFVIIKRQLVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMV 2933
Range 5: 2425 to 2931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.9 bits(718) | 0.0 | 149/169(88%) | 0/169(0%) | Minus/Plus |
Query 17 A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W 523 A*ERG EEH+VLP GHALL*S*S WF+G*RL LRCF IG STREE +KNIRVVLDV NRADSQRRQPNYTRTGCGSGAK RCDNVYCRR RRCL SFRAEDYKF RE RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVD *GT* GYDTGDC*W Subject 2425 A*ERGCEEHHVLPNGHALL*S*SASWFHG*RLRLRCF*IGASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*W 2931
Range 6: 2722 to 2931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 67/70(96%) | 0/70(0%) | Plus/Minus |
Query 17 PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 226 PSAISGIIT+LCPL VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC Subject 2722 PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 2931
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 8
Range 1: 2564 to 3073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
393.3 bits(852) | 0.0 | 165/170(97%) | 0/170(0%) | Minus/Plus |
Query 16 VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG 525 VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG Subject 2564 VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG 3073
Range 2: 2564 to 3073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
373.6 bits(809) | 0.0 | 156/170(92%) | 0/170(0%) | Plus/Minus |
Query 16 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH 525 TISNLRYHNQTMSLKRRRHFPRQIVRG+SGIDNAQRKLMVTKPVAYILDRKSTAT *LNDVAPEKTYNLLHGMSVSIAY S SIHYH+ALSHHFHTQFWYS AAVSGCQLYWEHQAQLEY YV LL*CLCQFENI*VIDVNH+TNRRFMITKA + LAVR VLR LFLKH Subject 2564 TISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMVTKPVAYILDRKSTATW*LNDVAPEKTYNLLHGMSVSIAYASDSIHYHVALSHHFHTQFWYSKAAVSGCQLYWEHQAQLEYLYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLFLKH 3073
Range 3: 2565 to 3071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
352.5 bits(763) | 0.0 | 152/169(90%) | 0/169(0%) | Plus/Minus |
Query 18 HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A 524 HQQSPVS*P+YVP* +STLSSSNCTR ERYR*RTEKTDGNQACSLHTRPKKHCH VTERRCSRKNL*SSARNE KHRL L QYTLS RPFAPLPHPVLV* GCRLWLSALLGTSSTTRI LC SSLVLVPIRKHLSHRRQP*NQP LYDHKSA P GST CSS+PLS*A Subject 2565 HQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDGNQACSLHTRPKKHCHLVTERRCSRKNL*SSARNECKHRLRLRQYTLSRRPFAPLPHPVLV**GCRLWLSALLGTSSTTRISLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGSTLCSSQPLS*A 3071
Range 4: 2565 to 3074 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.0 bits(751) | 0.0 | 155/170(91%) | 0/170(0%) | Minus/Plus |
Query 15 CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV 524 CLRKR RRT RTA W AFVIIKRRLV WLTSMT*MFSNWHKH*RR+T*+YSSCA*CSQ*S*QPETAA LYQNWVWKWCERA **CIL E *AMLTLIPCRRL*VFSGATSFSY VAVLFRSSM*ATGLVTISFLCALSIPL PRTI*RGKCRR LRDIVWL*YRRLLMV Subject 2565 CLRKRLRRT*RTAKWIRAFVIIKRRLVSWLTSMT*MFSNWHKH*RRKT*RYSSCA*CSQ*S*QPETAALLYQNWVWKWCERAT**CILSEA*AMLTLIPCRRL*VFSGATSFSYQVAVLFRSSM*ATGLVTISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMV 3074
Range 5: 2566 to 3072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.9 bits(729) | 0.0 | 152/169(90%) | 0/169(0%) | Minus/Plus |
Query 17 A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W 523 A*ERG EEH VLP G+ALL*S*S GWF+G*RL*LRCFRIGTSTREE HK+IRVVLDVPNRADSQRRQP YTRTGCGSGAKGR DNVYCRR RRCL SFRAEDYKFFREQRRSVT+WQCFFGRVCRLQAWLPSVFSVRYRYRS LVQFDEESVD *GT* GYDTGDC*W Subject 2566 A*ERGCEEHNVLPNGYALL*S*SAGWFHG*RL*LRCFRIGTSTREERHKDIRVVLDVPNRADSQRRQPYYTRTGCGSGAKGRRDNVYCRRRRRCLHSFRAEDYKFFREQRRSVTKWQCFFGRVCRLQAWLPSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*W 3072
Range 6: 2863 to 3072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 67/70(96%) | 0/70(0%) | Plus/Minus |
Query 17 PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 226 PSAISGIIT+LCPL VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC Subject 2863 PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 3072
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8
Range 1: 2499 to 3008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
390.5 bits(846) | 0.0 | 164/170(96%) | 0/170(0%) | Minus/Plus |
Query 16 VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG 525 VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGD IMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG Subject 2499 VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDEIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG 3008
Range 2: 2499 to 3008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
361.7 bits(783) | 0.0 | 152/170(89%) | 0/170(0%) | Plus/Minus |
Query 16 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH 525 TISNLRYHNQTMSLKRRRHFPRQIVRG+SGIDNAQRKLM+TKPVAYILDRKSTAT *LNDVAPEKT +LLHGMSVSIAY S IHY +ALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYV LL*CLCQFENI*VIDVNH+TNRRFMITKA + LAVR VLR L LKH Subject 2499 TISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMITKPVAYILDRKSTATW*LNDVAPEKTNDLLHGMSVSIAYASDCIHYLVALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLLLKH 3008
Range 3: 2500 to 3006 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.6 bits(750) | 0.0 | 150/169(89%) | 0/169(0%) | Plus/Minus |
Query 18 HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A 524 HQQSPVS*P+YVP* +STLSSSNCTR ERYR*RTEKTD NQACSLHTRPKKHCH VTERRCSRKN *SSARNE KHRL L YTLS RPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLC SSLVLVPIRKHLSHRRQP*NQP LYDHKSA P GST CSS+P S*A Subject 2500 HQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDDNQACSLHTRPKKHCHLVTERRCSRKN**SSARNECKHRLRLRLYTLSRRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGSTLCSSQPPS*A 3006
Range 4: 2500 to 3009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.5 bits(728) | 0.0 | 151/170(89%) | 0/170(0%) | Minus/Plus |
Query 15 CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV 524 CLR+R RRT RTA W AFVIIKRRLV WLTSMT*MFSNWHKH*RR+T*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERA *CI E *AMLTLIPCRR VFSGATSFSY VAVLFRSSM*ATGLV ISFLCALSIPL PRTI*RGKCRR LRDIVWL*YRRLLMV Subject 2500 CLRRRLRRT*RTAKWIRAFVIIKRRLVSWLTSMT*MFSNWHKH*RRKT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERATR*CIQSEA*AMLTLIPCRRSLVFSGATSFSYQVAVLFRSSM*ATGLVIISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMV 3009
Range 5: 2501 to 3007 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.6 bits(713) | 0.0 | 149/169(88%) | 0/169(0%) | Minus/Plus |
Query 17 A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W 523 A*E G EEH VLP G+ALL*S*S GWF+G*RL*LRCFRIGTSTREE HKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGR DNVY RR RRCL SFRAED+ FFREQRRSVT+WQCFFGRVCRLQAWL SVFSVRYRYRS LVQFDEESVD *GT* GYDTGDC*W Subject 2501 A*EGGCEEHNVLPNGYALL*S*SAGWFHG*RL*LRCFRIGTSTREERHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRRDNVYSRRRRRCLHSFRAEDH*FFREQRRSVTKWQCFFGRVCRLQAWLSSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*W 3007
Range 6: 2798 to 3007 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 65/70(93%) | 0/70(0%) | Plus/Minus |
Query 17 PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 226 PSAISGIIT+LCPL VDTFLVKLYEA*AVSITHREN* *PSL*PTYSTEKALPLGN*TTLLPKKL+IFC Subject 2798 PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN***PSL*PTYSTEKALPLGN*TTLLPKKLMIFC 3007
Pineapple mealybug wilt associated virus 2 polyprotein (ORF1a) and RNA dependent RNA polymerase genes, partial cds; and hydrophobic protein p5, heat shock protein 70, p46, coat protein, diverged coat protein, p20, p22, and p6 genes, complete cds
Sequence ID: AF283103.1 Length: 14861 Number of Matches: 3
Range 1: 1297 to 1800 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 73/168(43%) | 0/168(0%) | Minus/Plus |
Query 16 KKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG 519 K+ AA +T C C A GF VDVYD+ + +LA +EKK+++ F L LM+P+EL A DG + + L V V R+GD + Y+VG G++Y HS + I ++F + V G+ F V+Y GYRLGYH SLC+ D++ AS ++ R + TSF G S+VMIP + +G Subject 1297 KEVAAAKVTSCGGRFEDCGVSADAGFFVDVYDMSLQQLADGMEKKNMRTFSLALMYPVELLAADGEIYLETLDVLVKREGDCVRYSVGVTGESYTHSYRCISAYFTAPAVVARGGTVFKVQYEGYRLGYHHISLCLSDSSSASVSVQRHIRTSFHGKSIVMIPRLNNG 1800
Nucleotide Sequence (317 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
224.2 | 1192.2 | 32% | 4.189e-57 | 92% | KU674797.1 | |
217.8 | 1168.0 | 32% | 3.574e-55 | 88% | KU674796.1 | |
212.3 | 1146.4 | 26% | 1.616e-53 | 87% | KT000364.1 | |
210.0 | 1097.9 | 26% | 7.803e-53 | 84% | JQ023131.1 | |
210.5 | 1125.0 | 25% | 5.756e-53 | 86% | EF103901.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6
Range 1: 6508 to 6798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.2 bits(483) | 0.0 | 89/97(92%) | 0/97(0%) | Plus/Plus |
Query 27 AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F 317 ++S S*CDEFAWMC*IG*EGFGRRIHEEC+AV GEFTTWWRQDNASRRRIFWKEEACEDCHSEHRK GY*LGYSSQRRKEGD FGGEDRELVDC*F Subject 6508 SISVS*CDEFAWMC*IG*EGFGRRIHEECKAVRGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKCCGY*LGYSSQRRKEGD*FGGEDRELVDC*F 6798
Range 2: 6521 to 6796 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(461) | 0.0 | 91/92(99%) | 0/92(0%) | Plus/Plus |
Query 40 HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN 315 HDAMNLRGCVRLAKRALVGEYMKSV+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN Subject 6521 HDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN 6796
Range 3: 6526 to 6798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.6 bits(449) | 0.0 | 90/91(99%) | 0/91(0%) | Minus/Minus |
Query 45 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA 317 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADS TLFMYSPTKALLANLTHPRKFIA Subject 6526 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSLTLFMYSPTKALLANLTHPRKFIA 6798
Range 4: 6515 to 6796 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 87/94(93%) | 0/94(0%) | Minus/Minus |
Query 34 INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH 315 INNPRVRGLRHQI LLLSFSGSNSRVNIR S VRCGNLRTLLPSKIFVDETRCLASTRW*IHR Q +TLHVFADQSPLSQSNTSTQIHRIMKH Subject 6515 INNPRVRGLRHQISLLLSFSGSNSRVNIRSTSCVRCGNLRTLLPSKIFVDETRCLASTRW*IHRGQPYTLHVFADQSPLSQSNTSTQIHRIMKH 6796
Range 5: 6513 to 6746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 72/78(92%) | 0/78(0%) | Minus/Minus |
Query 32 FLLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL 265 FLLWLE*PS*YP+ F CSLWQSSHASSFQNIRRRDALSCLHQVVNSP+TA HSSCIRRPKPS*PI*HIHANSSHHE L Subject 6513 FLLWLE*PS*YPQHFLCSLWQSSHASSFQNIRRRDALSCLHQVVNSPRTALHSSCIRRPKPS*PI*HIHANSSHHETL 6746
Range 6: 6516 to 6797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 88/94(94%) | 0/94(0%) | Plus/Plus |
Query 35 CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEKEXXXXXXXXXXXXXGLLI 316 CFMMR*ICVDVLDWLRGLWSANT*RV* C R*IHHLVEARQRVSSTNILEGRSVRRLPQRT E RILTRLFEPEKERRR IWWRRPRTRGLLI Subject 6516 CFMMR*ICVDVLDWLRGLWSANT*RV*GCPR*IHHLVEARQRVSSTNILEGRSVRRLPQRTQEVLRILTRLFEPEKERRRLIWWRRPRTRGLLI 6797
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6
Range 1: 6443 to 6733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 87/97(90%) | 0/97(0%) | Plus/Plus |
Query 27 AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F 317 + S S*CDEFAWMC*IG*EGFGRRIHEECEA+ GEFTTWWRQDNASR RIFWKEEACEDCHSEHRK Y* GYSSQRRKEGDRFGGEDRELVDC*F Subject 6443 STSVS*CDEFAWMC*IG*EGFGRRIHEECEAIRGEFTTWWRQDNASR*RIFWKEEACEDCHSEHRKCCRY*RGYSSQRRKEGDRFGGEDRELVDC*F 6733
Range 2: 6456 to 6731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(461) | 0.0 | 91/92(99%) | 0/92(0%) | Plus/Plus |
Query 40 HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN 315 HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADIN+AIRAREGKKETDLVAKTANSWIVN Subject 6456 HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINAAIRAREGKKETDLVAKTANSWIVN 6731
Range 3: 6461 to 6733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.6 bits(449) | 0.0 | 90/91(99%) | 0/91(0%) | Minus/Minus |
Query 45 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA 317 ELTIHEFAVFATKSVSFFPSLARIA LISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA Subject 6461 ELTIHEFAVFATKSVSFFPSLARIAALISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA 6733
Range 4: 6450 to 6731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 87/94(93%) | 0/94(0%) | Minus/Minus |
Query 34 INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH 315 INNPRVRGLRHQIGLLLSFSGSNSRVNI S VRCGNLRTLLPSKIFV+ETRCLASTRW*IHR LHTLHVFADQSPLSQSNTSTQIHRIMKH Subject 6450 INNPRVRGLRHQIGLLLSFSGSNSRVNICSTSCVRCGNLRTLLPSKIFVNETRCLASTRW*IHRG*LHTLHVFADQSPLSQSNTSTQIHRIMKH 6731
Range 5: 6448 to 6681 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 69/78(88%) | 0/78(0%) | Minus/Minus |
Query 32 FLLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL 265 FLLWLE*P *Y + F CSLWQSSHASSFQNIR+RDALSCLHQVVNSP+ ASHSSCIRRPKPS*PI*HIHANSSHHE L Subject 6448 FLLWLE*PR*YLQHFLCSLWQSSHASSFQNIRQRDALSCLHQVVNSPRIASHSSCIRRPKPS*PI*HIHANSSHHETL 6681
Range 6: 6451 to 6732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 87/94(93%) | 0/94(0%) | Plus/Plus |
Query 35 CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEKEXXXXXXXXXXXXXGLLI 316 CFMMR*ICVDVLDWLRGLWSANT*RV*S R*IHHLVEARQRVS TNILEGRSVRRLPQRT E +ILTRLFEPEKERRRPIWWRRPRTRGLLI Subject 6451 CFMMR*ICVDVLDWLRGLWSANT*RV*SYPR*IHHLVEARQRVSLTNILEGRSVRRLPQRTQEVLQILTRLFEPEKERRRPIWWRRPRTRGLLI 6732
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6
Range 1: 2582 to 2872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 84/97(87%) | 0/97(0%) | Plus/Plus |
Query 27 AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F 317 + S S*CDEFAWMC*IG EGFGRRIHEECE V GEFTTWWRQDNASR R+FWKEEACEDCHSEHRK GY*LGYSSQRR+EGDRF EDRELVDC*F Subject 2582 STSVS*CDEFAWMC*IGKEGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFWKEEACEDCHSEHRKCCGY*LGYSSQRREEGDRFDSEDRELVDC*F 2872
Range 2: 2595 to 2870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(460) | 0.0 | 90/92(98%) | 0/92(0%) | Plus/Plus |
Query 40 HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN 315 HDAMNLRGCVRLAKRALVGEYMKSV+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDL+AKTANSWIVN Subject 2595 HDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLIAKTANSWIVN 2870
Range 3: 2600 to 2872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 87/91(96%) | 0/91(0%) | Minus/Minus |
Query 45 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA 317 ELTIHEFAVFA KSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+ TLFMYSPTKAL ANLTHPRKFIA Subject 2600 ELTIHEFAVFAIKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALFANLTHPRKFIA 2872
Range 4: 2589 to 2870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.2 bits(424) | 0.0 | 84/94(89%) | 0/94(0%) | Minus/Minus |
Query 34 INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH 315 INNPRVRGLR+QIGLLL FSGSNSRVNIR S VRCGNLRTLLPSKI V+ETRCLASTRW*IHR Q HTLHVFADQSPL QSNTSTQIHRIMKH Subject 2589 INNPRVRGLRYQIGLLLPFSGSNSRVNIRSTSCVRCGNLRTLLPSKILVNETRCLASTRW*IHRGQPHTLHVFADQSPLCQSNTSTQIHRIMKH 2870
Range 5: 2587 to 2817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 68/77(88%) | 0/77(0%) | Minus/Minus |
Query 32 LLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL 262 LLWLE*PS*YP+ F CSLWQSSHASSFQN R+RDALSCLHQVVNSP+T SHSSCIRRPKPS PI*HIHANSSHHE L Subject 2587 LLWLE*PS*YPQHFLCSLWQSSHASSFQNTRQRDALSCLHQVVNSPRTTSHSSCIRRPKPSLPI*HIHANSSHHETL 2817
Range 6: 2590 to 2817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 68/76(89%) | 0/76(0%) | Plus/Plus |
Query 35 CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEK 262 CFMMR*ICVDVLDW RGLWSANT*RV* C R*IHHLVEARQRVS T+ILEGRSVRRLPQRT E RILTRLFEPEK Subject 2590 CFMMR*ICVDVLDWQRGLWSANT*RV*GCPR*IHHLVEARQRVSLTSILEGRSVRRLPQRTQEVLRILTRLFEPEK 2817
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 6380 to 6655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(458) | 0.0 | 90/92(98%) | 0/92(0%) | Plus/Plus |
Query 40 HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN 315 HDAMNLRGCVRLAKRALVGEYMK+V+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN Subject 6380 HDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN 6655
Range 2: 6385 to 6657 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 87/91(96%) | 0/91(0%) | Minus/Minus |
Query 45 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA 317 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+ T FMYSPT ALLANLTHPRKFIA Subject 6385 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIA 6657
Range 3: 6367 to 6657 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 81/97(84%) | 0/97(0%) | Plus/Plus |
Query 27 AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F 317 + S S*CDEFAWMC*+G*EG GR IHEECE V GEFTTWWRQD+ASR RIFWKEEACEDC+SEH KR Y*LGYSSQRR+EGDRFG EDRELVDC*F Subject 6367 STSVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*F 6657
Range 4: 6374 to 6655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.4 bits(396) | 0.0 | 80/94(85%) | 0/94(0%) | Minus/Minus |
Query 34 INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH 315 INNPRVRGLR+QIGLLL FSGSNSRVNI AS VRC NLRTLLPSKIFV+ETR LASTRW*IHR Q H LHVF DQ PLSQ NTSTQIHRIMKH Subject 6374 INNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMKH 6655
Range 5: 6372 to 6602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.6 bits(331) | 0.0 | 65/77(84%) | 0/77(0%) | Minus/Minus |
Query 32 LLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL 262 LLWLE*PS*Y +RF+CSL QSSHASSFQNIR+RDA SCLHQVVNSP+T SHSSCI RP PS*P *HIHANSSHHE L Subject 6372 LLWLE*PS*YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL 6602
Range 6: 6375 to 6602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 64/76(84%) | 0/76(0%) | Plus/Plus |
Query 35 CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEK 262 CFMMR*ICVDVL WLRG WS NT*R+* C R*IHHLVEAR+RVS TNILEGRSVRRL QRT EA +ILTRLFEPEK Subject 6375 CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEK 6602
Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds
Sequence ID: EF103901.1 Length: 5715 Number of Matches: 6
Range 1: 123 to 407 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.5 bits(453) | 0.0 | 83/95(87%) | 0/95(0%) | Plus/Plus |
Query 33 SAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F 317 S S*CDEFAWMC IG*EGFGR IHEECE VCGEFTTWWRQDNAS R+FWKEEACEDCHSEHRKR GY*LGYSSQRR+EG R G EDRELVDC*F Subject 123 SVS*CDEFAWMCRIG*EGFGR*IHEECEVVCGEFTTWWRQDNASC*RVFWKEEACEDCHSEHRKRCGY*LGYSSQRREEGTRLGSEDRELVDC*F 407
Range 2: 130 to 405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.3 bits(441) | 0.0 | 88/92(96%) | 0/92(0%) | Plus/Plus |
Query 40 HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN 315 HDAMNLRGCV LAKRALVGEY KSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAI+AREGKKE DLVAKTANSWIVN Subject 130 HDAMNLRGCVGLAKRALVGEYTKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIQAREGKKEPDLVAKTANSWIVN 405
Range 3: 135 to 407 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 86/91(95%) | 0/91(0%) | Minus/Minus |
Query 45 ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA 317 ELTIHEFAVFATKS SFFPSLA IAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+FTLF+YSPTKALLAN THPRKFIA Subject 135 ELTIHEFAVFATKSGSFFPSLA*IAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNFTLFVYSPTKALLANPTHPRKFIA 407
Range 4: 124 to 405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 81/94(86%) | 0/94(0%) | Minus/Minus |
Query 34 INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH 315 INNPRVRGLR+Q+G LL FSG NSRVNIR AS VRCGNLRTLLPSKI V++TRCLASTRW*IHRRQLHTL VF DQSPLSQS+TSTQIHRIMKH Subject 124 INNPRVRGLRYQVGFLLPFSGLNSRVNIRSASCVRCGNLRTLLPSKILVNKTRCLASTRW*IHRRQLHTLRVFTDQSPLSQSDTSTQIHRIMKH 405
Range 5: 122 to 352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 68/77(88%) | 0/77(0%) | Minus/Minus |
Query 32 LLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL 262 LLWLE*PS*YP+RF CSLWQSSHASSFQN R++DALSCLHQVVNSPQT SHSSCI RPKPS*PI HIHANSSHHE L Subject 122 LLWLE*PS*YPQRFLCSLWQSSHASSFQNTRQQDALSCLHQVVNSPQTTSHSSCIHRPKPS*PIRHIHANSSHHETL 352
Range 6: 125 to 352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 67/76(88%) | 0/76(0%) | Plus/Plus |
Query 35 CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEK 262 CFMMR*ICVDV DWLRGLWS NT RV*SCLR*IHHLVEARQRV T+ILEGRSVRRLPQRT EA RILTRLF+PEK Subject 125 CFMMR*ICVDVSDWLRGLWSVNTRRV*SCLR*IHHLVEARQRVLLTSILEGRSVRRLPQRTQEALRILTRLFKPEK 352
Nucleotide Sequence (327 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
258.1 | 1366.1 | 28% | 2.753e-67 | 92% | KU674797.1 | |
249.0 | 1338.1 | 28% | 1.579e-64 | 94% | KU674796.1 | |
235.2 | 1279.5 | 28% | 2.17e-60 | 88% | JQ023131.1 | |
235.2 | 1279.5 | 28% | 2.17e-60 | 88% | NC_016509.1 | |
225.1 | 1223.6 | 28% | 2.35e-57 | 86% | KT000364.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 7
Range 1: 5469 to 5792 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.1 bits(557) | 0.0 | 104/108(96%) | 0/108(0%) | Plus/Minus |
Query 3 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RMLL 326 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQ+CSISHHQHETRS*HPFCTSVSSNDRSSH ISVPPEAHQALCS PDSRANHHYRRI GCTC*RMLL Subject 5469 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQVCSISHHQHETRS*HPFCTSVSSNDRSSHLISVPPEAHQALCSNPDSRANHHYRRILGCTC*RMLL 5792
Range 2: 5468 to 5794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 106/109(97%) | 0/109(0%) | Plus/Minus |
Query 1 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECYF 327 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTL VLLYQAMIVALI FQFLPKLIKRFVP+LTRVRTTIIDVSSAALAEECYF Subject 5468 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLSVLLYQAMIVALI*FQFLPKLIKRFVPTLTRVRTTIIDVSSAALAEECYF 5794
Range 3: 5470 to 5793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.9 bits(526) | 0.0 | 104/108(96%) | 0/108(0%) | Minus/Plus |
Query 2 SSILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD 325 SSILQQVQP+IRL*WWFARESG+EQSA**ASGGTEI *ELRSLLDTEVQKGCYDRVSC***EMLH WCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD Subject 5470 SSILQQVQPRIRL*WWFARESGLEQSA**ASGGTEIR*ELRSLLDTEVQKGCYDRVSC***EMLHTWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD 5793
Range 4: 5468 to 5794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 106/109(97%) | 0/109(0%) | Minus/Plus |
Query 1 EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 327 EVAFFSKCSR YVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYT GVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM Subject 5468 EVAFFSKCSRGYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTPGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 5794
Range 5: 5469 to 5792 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.4 bits(479) | 0.0 | 105/108(97%) | 0/108(0%) | Minus/Plus |
Query 3 K*HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG 326 K*HSSASAAEDTSIMVVRTRVR GTKRLMSFGRN*N MRATIIA*YRST+RVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG Subject 5469 K*HSSASAAEDTSIMVVRTRVRVGTKRLMSFGRN*N*MRATIIA*YRSTERVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG 5792
Range 6: 5596 to 5793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Minus |
Query 2 IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 199 IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTP V*HFSSSA*NPIVAPFLYFCIKQ Subject 5596 IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPGV*HFSSSA*NPIVAPFLYFCIKQ 5793
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 7
Range 1: 5404 to 5727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 101/108(94%) | 0/108(0%) | Plus/Minus |
Query 3 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RMLL 326 SPGSL+THHH PEDARQPLPSYSTAL*SEPDHSNLL* RLHQMC+ISHHQHETRS*HP CTSVSSNDRSSH ISVPPEAHQALCS PDSRANHHYRRIFGCTC*RMLL Subject 5404 SPGSLQTHHHRPEDARQPLPSYSTAL*SEPDHSNLL*LRLHQMCNISHHQHETRS*HPSCTSVSSNDRSSHLISVPPEAHQALCSNPDSRANHHYRRIFGCTC*RMLL 5727
Range 2: 5403 to 5729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.6 bits(510) | 0.0 | 102/109(94%) | 0/109(0%) | Plus/Minus |
Query 1 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECYF 327 HPRAHY+HITI QKMLDNLSRLIRPHSKASLTIQIYCD AYTRCV FLIISMKPDRSTL VLLYQAMIVALI FQFLPKLIKRFVP+LTRVRTTIIDVSSAALAEECYF Subject 5403 HPRAHYKHITIAQKMLDNLSRLIRPHSKASLTIQIYCDYAYTRCVTFLIISMKPDRSTLPVLLYQAMIVALI*FQFLPKLIKRFVPTLTRVRTTIIDVSSAALAEECYF 5729
Range 3: 5405 to 5728 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 102/108(94%) | 0/108(0%) | Minus/Plus |
Query 2 SSILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD 325 SSILQQVQPKIRL*WWFARESG+EQSA**ASGGTEI *ELRSLLDTEVQ+GCYDRVSC***EMLHIWCKR HSKFEWSGSL*SAVE*DGRGCRASSG W*CV NEPGD Subject 5405 SSILQQVQPKIRL*WWFARESGLEQSA**ASGGTEIR*ELRSLLDTEVQEGCYDRVSC***EMLHIWCKRSHSKFEWSGSL*SAVE*DGRGCRASSGRW*CVCNEPGD 5728
Range 4: 5403 to 5729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 108/109(99%) | 0/109(0%) | Minus/Plus |
Query 1 EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 327 EVAFFSKCSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM Subject 5403 EVAFFSKCSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 5729
Range 5: 5404 to 5727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 101/108(94%) | 0/108(0%) | Minus/Plus |
Query 3 K*HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG 326 K*HSSASAAEDTSIMVVRTRVR GTKRLMSFGRN*N MRATIIA*YRST RVLRSGFMLMMRN THLV*A SQ*I*MVRLALECGRIRRERLSSIFW MVMC **ARG Subject 5404 K*HSSASAAEDTSIMVVRTRVRVGTKRLMSFGRN*N*MRATIIA*YRSTGRVLRSGFMLMMRNVTHLV*A*SQ*I*MVRLALECGRIRRERLSSIFWAMVMCL**ARG 5727
Range 6: 5531 to 5728 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Minus |
Query 2 IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 199 IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ Subject 5531 IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 5728
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7
Range 1: 5331 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 95/107(89%) | 0/107(0%) | Plus/Minus |
Query 3 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RML 323 SPGS R HHHHPEDARQ LPSYSTAL*SEPDHSNL *QR HQMCSISHHQHETRS*HPFCTSVSSND +SHPISVPPEAHQAL S PDSRANHHYR FGCTC RML Subject 5331 SPGSSRRHHHHPEDARQSLPSYSTAL*SEPDHSNLR*QRSHQMCSISHHQHETRS*HPFCTSVSSNDHNSHPISVPPEAHQALYSNPDSRANHHYRHTFGCTCCRML 5651
Range 2: 5327 to 5653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.5 bits(488) | 0.0 | 104/109(95%) | 0/109(0%) | Minus/Plus |
Query 1 EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 327 +VAF+SK SRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGE+VEHLLGDGDVFVMSPGM Subject 5327 DVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGM 5653
Range 3: 5332 to 5652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.0 bits(487) | 0.0 | 97/107(91%) | 0/107(0%) | Minus/Plus |
Query 2 SILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD 322 SILQQVQPK+ L*WWFARESG+E SA**ASGGTEIG*EL SLLDTEVQKGCYDRVSC***EMLHIWC+RCH KFEWSGSL*SAVE*DGR CRASSG*W*C+R+EPGD Subject 5332 SILQQVQPKVCL*WWFARESGLE*SA**ASGGTEIG*EL*SLLDTEVQKGCYDRVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGD 5652
Range 4: 5330 to 5653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.8 bits(482) | 0.0 | 95/108(88%) | 0/108(0%) | Plus/Minus |
Query 1 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECY 324 HPRAH+E ITITQKMLDNLSRLIRPHSKASLTIQIY DNA+TRCVAFLIISMKPDRSTL VLLYQAMI+ LIQFQFLPKLIKRF+P+LTRVRTTIID+ SA LA ECY Subject 5330 HPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKPDRSTLSVLLYQAMIITLIQFQFLPKLIKRFIPTLTRVRTTIIDIPSAVLAVECY 5653
Range 5: 5331 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 96/107(90%) | 0/107(0%) | Minus/Plus |
Query 3 *HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG 323 *HS+AS AE SIMVVRTRVR G KRLMSFGRN*NWMR IIA*YRST+RVLRSGFMLMMRNATHLV*ALS *I*MVRLALECGRIRRERLSSIFWVMVM S**ARG Subject 5331 *HSTASTAEGMSIMVVRTRVRVGIKRLMSFGRN*NWMRVMIIA*YRSTERVLRSGFMLMMRNATHLV*ALSP*I*MVRLALECGRIRRERLSSIFWVMVMSS**ARG 5651
Range 6: 5455 to 5652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 64/66(97%) | 0/66(0%) | Plus/Minus |
Query 2 IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 199 IPGLIT TSPSPRRCST SPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ Subject 5455 IPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 5652
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7
Range 1: 5331 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 95/107(89%) | 0/107(0%) | Plus/Minus |
Query 3 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RML 323 SPGS R HHHHPEDARQ LPSYSTAL*SEPDHSNL *QR HQMCSISHHQHETRS*HPFCTSVSSND +SHPISVPPEAHQAL S PDSRANHHYR FGCTC RML Subject 5331 SPGSSRRHHHHPEDARQSLPSYSTAL*SEPDHSNLR*QRSHQMCSISHHQHETRS*HPFCTSVSSNDHNSHPISVPPEAHQALYSNPDSRANHHYRHTFGCTCCRML 5651
Range 2: 5327 to 5653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.5 bits(488) | 0.0 | 104/109(95%) | 0/109(0%) | Minus/Plus |
Query 1 EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 327 +VAF+SK SRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGE+VEHLLGDGDVFVMSPGM Subject 5327 DVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGM 5653
Range 3: 5332 to 5652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.0 bits(487) | 0.0 | 97/107(91%) | 0/107(0%) | Minus/Plus |
Query 2 SILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD 322 SILQQVQPK+ L*WWFARESG+E SA**ASGGTEIG*EL SLLDTEVQKGCYDRVSC***EMLHIWC+RCH KFEWSGSL*SAVE*DGR CRASSG*W*C+R+EPGD Subject 5332 SILQQVQPKVCL*WWFARESGLE*SA**ASGGTEIG*EL*SLLDTEVQKGCYDRVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGD 5652
Range 4: 5330 to 5653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.8 bits(482) | 0.0 | 95/108(88%) | 0/108(0%) | Plus/Minus |
Query 1 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECY 324 HPRAH+E ITITQKMLDNLSRLIRPHSKASLTIQIY DNA+TRCVAFLIISMKPDRSTL VLLYQAMI+ LIQFQFLPKLIKRF+P+LTRVRTTIID+ SA LA ECY Subject 5330 HPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKPDRSTLSVLLYQAMIITLIQFQFLPKLIKRFIPTLTRVRTTIIDIPSAVLAVECY 5653
Range 5: 5331 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 96/107(90%) | 0/107(0%) | Minus/Plus |
Query 3 *HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG 323 *HS+AS AE SIMVVRTRVR G KRLMSFGRN*NWMR IIA*YRST+RVLRSGFMLMMRNATHLV*ALS *I*MVRLALECGRIRRERLSSIFWVMVM S**ARG Subject 5331 *HSTASTAEGMSIMVVRTRVRVGIKRLMSFGRN*NWMRVMIIA*YRSTERVLRSGFMLMMRNATHLV*ALSP*I*MVRLALECGRIRRERLSSIFWVMVMSS**ARG 5651
Range 6: 5455 to 5652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 64/66(97%) | 0/66(0%) | Plus/Minus |
Query 2 IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 199 IPGLIT TSPSPRRCST SPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ Subject 5455 IPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 5652
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 7
Range 1: 1543 to 1866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.1 bits(485) | 0.0 | 95/108(88%) | 0/108(0%) | Plus/Minus |
Query 3 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RMLL 326 SPGS H PEDARQPLPSYSTAL*SEPD S+LL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVP EAHQAL S PDSRANHHYRR FGCTC RMLL Subject 1543 SPGSXXXXXHLPEDARQPLPSYSTAL*SEPDRSSLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPLEAHQALYSNPDSRANHHYRRNFGCTCCRMLL 1866
Range 2: 1542 to 1868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.4 bits(479) | 0.0 | 94/109(86%) | 0/109(0%) | Plus/Minus |
Query 1 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECYF 327 HPR H I+QKMLDNLSRLIRPHSKASLT+Q+YCDNAYTRCVAFLIISMKPDRSTL VLLYQAMIVALIQFQFL KLIKRF+P+LTRVRTTIIDV+SAALA ECYF Subject 1542 HPRGHXXXXXISQKMLDNLSRLIRPHSKASLTVQVYCDNAYTRCVAFLIISMKPDRSTLSVLLYQAMIVALIQFQFLSKLIKRFIPTLTRVRTTIIDVTSAALAVECYF 1868
Range 3: 1542 to 1868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.1 bits(463) | 0.0 | 100/109(92%) | 0/109(0%) | Minus/Plus |
Query 1 EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 327 EVAF+SKCSR YVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGD M+PGM Subject 1542 EVAFYSKCSRSYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDXXXXXMTPGM 1868
Range 4: 1544 to 1867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 94/108(87%) | 0/108(0%) | Minus/Plus |
Query 2 SSILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD 325 SSILQQVQPK+RL*WWFARESG+E SA**AS GTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSK E SGSL*SAVE*DGRGCRASSG +PGD Subject 1544 SSILQQVQPKLRL*WWFARESGLE*SA**ASRGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKLERSGSL*SAVE*DGRGCRASSGRXXXXXXDPGD 1867
Range 5: 1543 to 1866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 93/108(86%) | 0/108(0%) | Minus/Plus |
Query 3 K*HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG 326 K*HS+ASAAE TSIMVVRTRVR G KRLMSF RN*NWMRATIIA*YRST+RVLRSGFMLMMRNATHLV*ALSQ* * VRLALECGRIRRERLSSIFW M * RG Subject 1543 K*HSTASAAEVTSIMVVRTRVRVGIKRLMSFERN*NWMRATIIA*YRSTERVLRSGFMLMMRNATHLV*ALSQ*T*TVRLALECGRIRRERLSSIFWEMXXXXX*PRG 1866
Range 6: 1670 to 1867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 59/66(89%) | 0/66(0%) | Plus/Minus |
Query 2 IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 199 IPG+ SPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ Subject 1670 IPGVXXXXXXSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 1867
Nucleotide Sequence (415 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
266.4 | 1433.0 | 29% | 1.389e-69 | 83% | KU674797.1 | |
265.5 | 1408.2 | 29% | 2.622e-69 | 83% | KU674796.1 | |
263.2 | 1353.7 | 30% | 1.283e-68 | 74% | JQ023131.1 | |
263.2 | 1353.7 | 30% | 1.283e-68 | 74% | NC_016509.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 7
Range 1: 1580 to 1945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 118/122(97%) | 0/122(0%) | Plus/Plus |
Query 50 LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK 415 L DVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEG+V+AVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK Subject 1580 LWDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGAVVAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK 1945
Range 2: 1565 to 1945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 111/127(87%) | 0/127(0%) | Minus/Minus |
Query 35 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ 415 LDVKAQHSLQLPHTNTALERA QKIVA+QNCQLQPAPILI ++QLSRI TSKK*VRKRHVNA RQPPP*NTHI+P NFQR SD GPFNETKN+ LT TPVAGQQPLVTKFWGEKTLPLNIP*P TQ Subject 1565 LDVKAQHSLQLPHTNTALERASQKIVAIQNCQLQPAPILIPIIQLSRIFTSKK*VRKRHVNAHRQPPP*NTHIIPYNFQRNSDNGPFNETKNKPLT*TPVAGQQPLVTKFWGEKTLPLNIP*PP*TQ 1945
Range 3: 1578 to 1943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 107/122(88%) | 0/122(0%) | Plus/Plus |
Query 48 G*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS 413 G GMFKGNVFSPQNFVTSGC*PATGV VR FFVSLKGP SL+LWKL G ICVFYGGGCLWAFTWRFLTYFLDV+IRESC ISIGAGC+WQF* ATIFW ALSRAVLVCGS*SECCALTS Subject 1578 GYGMFKGNVFSPQNFVTSGC*PATGVQVRGLFFVSLKGPLSLFLWKL*GMICVFYGGGCLWAFTWRFLTYFLDVKIRESCIMGISIGAGCSWQF*MATIFWLALSRAVLVCGS*SECCALTS 1943
Range 4: 1579 to 1944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.3 bits(516) | 0.0 | 117/122(96%) | 0/122(0%) | Minus/Minus |
Query 49 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS 414 LTLKRSIRFNFRTLIQLSKEPA+RLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTA T PSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TS S Subject 1579 LTLKRSIRFNFRTLIQLSKEPARRLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTATTAPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSHS 1944
Range 5: 1578 to 1892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 87/105(83%) | 0/105(0%) | Minus/Minus |
Query 48 RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLA 362 RKS+P+DCC SELP AASTNTY +TALPY HI*KVSEEAPRKRP+AASAIEHAY T *LPE QR R LQRNKK+ SY NSSRGSTTTCDKILG*KNIALEHP+A Subject 1578 RKSQPEDCCHSELPAAASTNTYPHNTALPYLHI*KVSEEAPRKRPQAASAIEHAYHTL*LPEEQRQRPLQRNKKQTSYLNSSRGSTTTCDKILG*KNIALEHPIA 1892
Range 6: 1579 to 1809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 66/77(86%) | 0/77(0%) | Plus/Plus |
Query 49 AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG 279 A GCSRAMFFHPKILSQVVVDPRLEF *E+ FLFR*R R RC+SGSY V YACSMAEAA GRLRGASSLTF*M* YG Subject 1579 AMGCSRAMFFHPKILSQVVVDPRLEFR*EVCFLFR*RGRCRCSSGSYKV*YACSMAEAACGRLRGASSLTF*M*RYG 1809
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 7
Range 1: 1515 to 1880 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 118/122(97%) | 0/122(0%) | Plus/Plus |
Query 50 LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK 415 L DVQGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK Subject 1515 LWDVQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK 1880
Range 2: 1513 to 1878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.0 bits(548) | 0.0 | 104/122(85%) | 0/122(0%) | Plus/Plus |
Query 48 G*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS 413 G GMFKGNVFSPQNF TSGC*PATGV R FVSLKGP SLYLWKL GTICVFYGGGC WAFTW FLTYFLDVRIRESC ISIGAGC+W+F*TATI+WPALSRAV VCGS*SECCALTS Subject 1513 GYGMFKGNVFSPQNFATSGC*PATGVQERGMSFVSLKGPLSLYLWKL*GTICVFYGGGCPWAFTWHFLTYFLDVRIRESCIMGISIGAGCSWRF*TATIYWPALSRAVSVCGS*SECCALTS 1878
Range 3: 1500 to 1880 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.0 bits(535) | 0.0 | 108/127(85%) | 0/127(0%) | Minus/Minus |
Query 35 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ 415 LDVKAQHSLQLPHT+TALERAGQ IVAVQN QLQPAPILI ++QLSRILTSKK*VRK HVNA QPPP*NTHIVP NFQRYSD GPFNETK+ L+ TPVAGQQPLV KFWGEKTLPLNIP*P TQ Subject 1500 LDVKAQHSLQLPHTDTALERAGQ*IVAVQNRQLQPAPILIPIIQLSRILTSKK*VRKCHVNAHGQPPP*NTHIVPYNFQRYSDNGPFNETKDIPLS*TPVAGQQPLVAKFWGEKTLPLNIP*PPRTQ 1880
Range 4: 1514 to 1879 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 115/122(94%) | 0/122(0%) | Minus/Minus |
Query 49 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS 414 LTLKRSIRFNFRTLIQLSKEPA RLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT L PELQSRVNNHL QNFGVKKHCP*TS S Subject 1514 LTLKRSIRFNFRTLIQLSKEPANRLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLFPELQSRVNNHLWQNFGVKKHCP*TSHS 1879
Range 5: 1513 to 1827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.8 bits(432) | 0.0 | 87/105(83%) | 0/105(0%) | Minus/Minus |
Query 48 RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLA 362 RKSRP DCCRSE P AASTNTY +TALPYPHI*KVSEE PRKRP+AASAIEHAYRT *LPEVQR R LQRNK+ S+ NSSRGSTTTC KILG*KNIALEHP+A Subject 1513 RKSRPIDCCRSEPPAAASTNTYPHNTALPYPHI*KVSEEVPRKRPRAASAIEHAYRTL*LPEVQR*RPLQRNKRHTSFLNSSRGSTTTCGKILG*KNIALEHPIA 1827
Range 6: 1514 to 1744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 65/77(84%) | 0/77(0%) | Plus/Plus |
Query 49 AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG 279 A GCSRAMFFHPKIL QVVVDPRLEF E+ LFR*R R RCTSGSY VRYACSMAEAA GRLRG SSLTF*M*GYG Subject 1514 AMGCSRAMFFHPKILPQVVVDPRLEFRKEVCLLFR*RGRYRCTSGSYKVRYACSMAEAARGRLRGTSSLTF*M*GYG 1744
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7
Range 1: 1439 to 1804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.2 bits(568) | 0.0 | 116/122(95%) | 0/122(0%) | Plus/Plus |
Query 50 LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK 415 L D+QGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGEL+YGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK Subject 1439 LWDIQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELFYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK 1804
Range 2: 1424 to 1804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 105/127(83%) | 0/127(0%) | Minus/Minus |
Query 35 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ 415 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQP PILI++ QL+R+LTSK+ VRKRHVN RQPPP*N HIVP NF+RY D PFNETKN LT TPVAGQQPLVTKF GEKTLPLNIP*P TQ Subject 1424 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPTPILITIKQLTRVLTSKEQVRKRHVNTHRQPPP*NAHIVPYNFKRYGDNCPFNETKNIPLT*TPVAGQQPLVTKFRGEKTLPLNIP*PPRTQ 1804
Range 3: 1422 to 1802 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.8 bits(517) | 0.0 | 102/127(80%) | 0/127(0%) | Plus/Plus |
Query 33 CWVCLG*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS 413 C V G G+FKGNVFSP+NFVTSGC*PATGV VR FFVSLKG S YL KL GTIC FYGGGCLW FTWRFLT LDVR R SC ISIG GC+WQF*TATIFWPALSRAVLVCGS*SECCALTS Subject 1422 CCVRGGYGIFKGNVFSPRNFVTSGC*PATGVQVRGMFFVSLKGQLSPYLLKL*GTICAFYGGGCLWVFTWRFLTCSLDVRTRVSCFMVISIGVGCSWQF*TATIFWPALSRAVLVCGS*SECCALTS 1802
Range 4: 1438 to 1803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 115/122(94%) | 0/122(0%) | Minus/Minus |
Query 49 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS 414 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASC+QHQYLSP* SSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT LLPELQSRVNNHL*QNFGVKKHCP* S S Subject 1438 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCNQHQYLSP*NSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLLPELQSRVNNHL*QNFGVKKHCP*ISHS 1803
Range 5: 1422 to 1751 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 81/110(74%) | 0/110(0%) | Minus/Minus |
Query 33 RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLAQTHPT 362 RKSRPKDCCRSELP A +TNTY TA P PHI*+ SEEAPRK P+AASAIE AYRT *L EV+R LQRNKK SY NSSRGSTTTCDKI G*KNIALE+P+A + T Subject 1422 RKSRPKDCCRSELPAATNTNTYHHKTAHPCPHI*RASEEAPRKHPQAASAIERAYRTL*LQEVRR*LPLQRNKKHTSYLNSSRGSTTTCDKISG*KNIALEYPIAAPNAT 1751
Range 6: 1438 to 1668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 59/77(77%) | 0/77(0%) | Plus/Plus |
Query 49 AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG 279 A G SRAMFFHP+ILSQVVVDPRLEF *E+ FLFR*R R TS SY VRYA SMAEAA G LRGASSL *M*G+G Subject 1438 AMGYSRAMFFHPEILSQVVVDPRLEFR*EVCFLFR*RGSYRRTS*SYKVRYARSMAEAACGCLRGASSLAL*M*GHG 1668
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7
Range 1: 1439 to 1804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.2 bits(568) | 0.0 | 116/122(95%) | 0/122(0%) | Plus/Plus |
Query 50 LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK 415 L D+QGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGEL+YGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK Subject 1439 LWDIQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELFYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK 1804
Range 2: 1424 to 1804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 105/127(83%) | 0/127(0%) | Minus/Minus |
Query 35 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ 415 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQP PILI++ QL+R+LTSK+ VRKRHVN RQPPP*N HIVP NF+RY D PFNETKN LT TPVAGQQPLVTKF GEKTLPLNIP*P TQ Subject 1424 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPTPILITIKQLTRVLTSKEQVRKRHVNTHRQPPP*NAHIVPYNFKRYGDNCPFNETKNIPLT*TPVAGQQPLVTKFRGEKTLPLNIP*PPRTQ 1804
Range 3: 1422 to 1802 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.8 bits(517) | 0.0 | 102/127(80%) | 0/127(0%) | Plus/Plus |
Query 33 CWVCLG*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS 413 C V G G+FKGNVFSP+NFVTSGC*PATGV VR FFVSLKG S YL KL GTIC FYGGGCLW FTWRFLT LDVR R SC ISIG GC+WQF*TATIFWPALSRAVLVCGS*SECCALTS Subject 1422 CCVRGGYGIFKGNVFSPRNFVTSGC*PATGVQVRGMFFVSLKGQLSPYLLKL*GTICAFYGGGCLWVFTWRFLTCSLDVRTRVSCFMVISIGVGCSWQF*TATIFWPALSRAVLVCGS*SECCALTS 1802
Range 4: 1438 to 1803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 115/122(94%) | 0/122(0%) | Minus/Minus |
Query 49 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS 414 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASC+QHQYLSP* SSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT LLPELQSRVNNHL*QNFGVKKHCP* S S Subject 1438 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCNQHQYLSP*NSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLLPELQSRVNNHL*QNFGVKKHCP*ISHS 1803
Range 5: 1422 to 1751 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 81/110(74%) | 0/110(0%) | Minus/Minus |
Query 33 RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLAQTHPT 362 RKSRPKDCCRSELP A +TNTY TA P PHI*+ SEEAPRK P+AASAIE AYRT *L EV+R LQRNKK SY NSSRGSTTTCDKI G*KNIALE+P+A + T Subject 1422 RKSRPKDCCRSELPAATNTNTYHHKTAHPCPHI*RASEEAPRKHPQAASAIERAYRTL*LQEVRR*LPLQRNKKHTSYLNSSRGSTTTCDKISG*KNIALEYPIAAPNAT 1751
Range 6: 1438 to 1668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 59/77(77%) | 0/77(0%) | Plus/Plus |
Query 49 AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG 279 A G SRAMFFHP+ILSQVVVDPRLEF *E+ FLFR*R R TS SY VRYA SMAEAA G LRGASSL *M*G+G Subject 1438 AMGYSRAMFFHPEILSQVVVDPRLEFR*EVCFLFR*RGSYRRTS*SYKVRYARSMAEAACGCLRGASSLAL*M*GHG 1668
Nucleotide Sequence (312 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
216.4 | 1179.3 | 44% | 9.285e-55 | 69% | KU674796.1 | |
213.2 | 1145.4 | 44% | 8.577e-54 | 71% | KU674797.1 | |
205.4 | 974.0 | 44% | 1.898e-51 | 64% | AF195822.1 | |
182.5 | 684.2 | 52% | 1.496e-44 | 45% | JQ023131.1 | |
182.5 | 684.2 | 52% | 1.496e-44 | 45% | NC_016509.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8
Range 1: 11832 to 12140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 93/103(90%) | 0/103(0%) | Minus/Minus |
Query 1 RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLRNI 309 RTNFAKRGL LPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTA LCSGVKMK LSFFL I VSSFN+PE+A+ FQLR I Subject 11832 RTNFAKRGLYLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTAALCSGVKMKCLSFFLVIGVSSFNDPELAYAFQLRII 12140
Range 2: 11833 to 12141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.0 bits(465) | 0.0 | 92/103(89%) | 0/103(0%) | Plus/Plus |
Query 2 MLRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR 310 M+RNWK A SG LKLDT I KKKDK+FILTPEQR AVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEG++SPLLAKFVR Subject 11833 MMRNWKAYANSGSLKLDTPITKKKDKHFILTPEQRAAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGKYSPLLAKFVR 12141
Range 3: 11834 to 12142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.3 bits(444) | 0.0 | 91/103(88%) | 0/103(0%) | Minus/Minus |
Query 3 FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT 311 + QTSLKED I PLLFYQSL*+TTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*N YPFS*LS YLAL+TL HT SNYA+ Subject 11834 YAQTSLKEDCICPLLFYQSL*QTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NAYPFS*LSAYLALMTLNWHTPSNYAS 12142
Range 4: 11833 to 12141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 91/103(88%) | 0/103(0%) | Minus/Minus |
Query 2 SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPITQH 310 ++KLR*KRT LFYSISRYS RHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHR PLFRRQNE+LILFLSYRRI*L**P* RLPIT H Subject 11833 THKLR*KRTVFALFYSISRYSRRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRCPLFRRQNEMLILFLSYRRI*L**P*IGIRLPITHH 12141
Range 5: 11948 to 12136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 59/63(94%) | 0/63(0%) | Plus/Plus |
Query 117 ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSL 305 ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCR L*RLIE*KR ++VLF*RSL Subject 11948 ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRLL*RLIE*KRANTVLF*RSL 12136
Range 6: 11832 to 11924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 25/31(81%) | 0/31(0%) | Plus/Plus |
Query 1 YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD 93 Y A*LE VC FRVIKARY D+*EKG* FHFD Subject 11832 YDA*LEGVCQFRVIKARYADN*EKG*AFHFD 11924
Range 7: 11964 to 12137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 56/58(97%) | 0/58(0%) | Plus/Plus |
Query 133 YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVC 306 YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVV YSD**NRRG IQSSFSEVC Subject 11964 YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVCYSD**NRRGQIQSSFSEVC 12137
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 8
Range 1: 12092 to 12400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.2 bits(459) | 0.0 | 91/103(88%) | 0/103(0%) | Minus/Minus |
Query 1 RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLRNI 309 RTNFAKRGLNLPSSILSVA+ADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCA ASFVLFGRALTA LCSGVK+ LSFFL I VSSFN+PEVA+ FQ RNI Subject 12092 RTNFAKRGLNLPSSILSVALADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCANASFVLFGRALTAALCSGVKI*CLSFFLVIGVSSFNDPEVAYAFQPRNI 12400
Range 2: 12093 to 12401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(452) | 0.0 | 91/103(88%) | 0/103(0%) | Plus/Plus |
Query 2 MLRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR 310 MLR WK ATSG LKLDT I KKKDK++ILTPEQR AVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSG G+IPLVQVSSA ATDRIEEGRFSPLLAKFVR Subject 12093 MLRGWKAYATSGSLKLDTPITKKKDKHYILTPEQRAAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGNGSIPLVQVSSARATDRIEEGRFSPLLAKFVR 12401
Range 3: 12094 to 12402 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 90/103(87%) | 0/103(0%) | Minus/Minus |
Query 3 FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT 311 +VQTSLKED*I PLLFYQSL +TTPALVGYY SQIRHHRSARV*EKHLGSRTTAR LHLYYSAELSPLPSVPASK N YPFS*LS YLAL+TLK HT SN+AT Subject 12094 YVQTSLKED*ICPLLFYQSLSQTTPALVGYYHSQIRHHRSARV*EKHLGSRTTARMLHLYYSAELSPLPSVPASKYNAYPFS*LSAYLALMTLKSHTPSNHAT 12402
Range 4: 12093 to 12401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 89/103(86%) | 0/103(0%) | Minus/Minus |
Query 2 SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPITQH 310 +YKLR*KRTES LFYSISR RHLH*WD T PRYVIIVRHAFEKNT*VQEQLRE FICTIRQSSHR PLFRRQN +LILFLSYRRI*L**P*S RLP TQH Subject 12093 TYKLR*KRTESALFYSISRSRRRHLH*WDTTIPRYVIIVRHAFEKNT*VQEQLRECFICTIRQSSHRCPLFRRQNIMLILFLSYRRI*L**P*SRIRLPTTQH 12401
Range 5: 12208 to 12399 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 57/64(89%) | 0/64(0%) | Plus/Plus |
Query 117 ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY 308 ELCRIVQMK SRSCS*T*VFFSNACRTMMTYLG V+SH*CRCR RLIE*KR DSVLF*RSLY Subject 12208 ELCRIVQMKHSRSCS*T*VFFSNACRTMMTYLGMVVSH*CRCRLRERLIE*KRADSVLF*RSLY 12399
Range 6: 12092 to 12184 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 23/31(74%) | 0/31(0%) | Plus/Plus |
Query 1 YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD 93 YVA LE VC FRVIKARY D+*EKG* +FD Subject 12092 YVAWLEGVCDFRVIKARYADN*EKG*ALYFD 12184
Range 7: 12224 to 12400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 54/59(92%) | 0/59(0%) | Plus/Plus |
Query 133 YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT 309 YK*S RAVVLEPRCFSQTRAER**RIWE *YPTSAGVV SD**NRRG IQSSFSEVCT Subject 12224 YK*SIRAVVLEPRCFSQTRAER**RIWEW*YPTSAGVVCESD**NRRGQIQSSFSEVCT 12400
Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds
Sequence ID: AF195822.1 Length: 12394 Number of Matches: 8
Range 1: 5583 to 5891 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 88/103(85%) | 0/103(0%) | Minus/Minus |
Query 1 RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLRNI 309 RTNFAKRGLNLPSSIL VAIADDTCTSGI PFPDTSSSFGTRLRKTPRFKNNCAKASFV FG+AL A LCSGVK K LSFFL I +SSFN+P A+VFQLRNI Subject 5583 RTNFAKRGLNLPSSILYVAIADDTCTSGI*PFPDTSSSFGTRLRKTPRFKNNCAKASFVAFGKALAAALCSGVKTKCLSFFLVIGISSFNDP*FAYVFQLRNI 5891
Range 2: 5584 to 5892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.6 bits(427) | 0.0 | 85/103(83%) | 0/103(0%) | Plus/Plus |
Query 2 MLRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR 310 MLRNWKT A G LKLD I KKKDK+F+LTPEQR A RALPN+TNEAFAQLFLNLGVFL RVPN++DVSGKG IPLVQVSSA+AT RIEEGRFSPLLAKFVR Subject 5584 MLRNWKTYANQGSLKLDMPITKKKDKHFVLTPEQRAAARALPNATNEAFAQLFLNLGVFLNRVPNEEDVSGKGYIPLVQVSSAMATYRIEEGRFSPLLAKFVR 5892
Range 3: 5584 to 5892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 76/103(74%) | 0/103(0%) | Minus/Minus |
Query 2 SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPITQH 310 +Y+LR*KRT+S FYSI R+S R+LH*WDITFPRYV VRH EKN *VQE LRESFI ++RQSS R PLFRRQNE+LILFLSYR I* **P RLPITQH Subject 5584 TYELR*KRTKSAFFYSICRHSRRYLH*WDITFPRYVFFVRHTVEKNA*VQE*LRESFIRSVRQSSCRCPLFRRQNEMLILFLSYRHI*F**PLIRIRLPITQH 5892
Range 4: 5585 to 5893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 73/103(71%) | 0/103(0%) | Minus/Minus |
Query 3 FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT 311 +V+TSLKED*I LLFY S *+T PALVGY LSQIR RSA *EK LGSR ARKLH SA+L PLPSV ASK N YPFS*L YL L+TL HTSSNYAT Subject 5585 YVRTSLKED*ICLLLFYMSP*QTIPALVGYNLSQIRLLRSAHG*EKRLGSRIIARKLHS*RSAKLLPLPSVQASKRNAYPFS*L*AYLVLMTLDSHTSSNYAT 5893
Range 5: 5699 to 5890 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 46/64(72%) | 0/64(0%) | Plus/Plus |
Query 117 ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY 308 ELCR ++MKLSR+ S*T* FFS CRT TYLGKVISH*CR R L R IE*K+ D VLF*RS Y Subject 5699 ELCRTLRMKLSRNYS*T*AFFSTVCRTKKTYLGKVISH*CRYRLLWRHIE*KKADLVLF*RSSY 5890
Range 6: 5583 to 5675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 23/31(74%) | 0/31(0%) | Plus/Plus |
Query 1 YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD 93 YVA*LEDVC RVIK RY +*EKG* F FD Subject 5583 YVA*LEDVCESRVIKTRYAYN*EKG*AFRFD 5675
Range 7: 5715 to 5891 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 42/59(71%) | 0/59(0%) | Plus/Plus |
Query 133 YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT 309 Y+*SFRA++LEPR FSQ AER RIWER YPTSAG+V Y D *NRR I SSFSEV T Subject 5715 YE*SFRAIILEPRRFSQPCAERRRRIWERLYPTSAGIVCYGDI*NRRRQI*SSFSEVRT 5891
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7
Range 1: 11742 to 12047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 76/102(75%) | 0/102(0%) | Plus/Plus |
Query 5 LRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR 310 +RNWK AT G L+LDT I KKK+K+F LT EQ+ AVR PNSTNEAFAQLFLNLGVFLKRVP D+D+SG+GNIPLV+VS A +TDRIE+GR+SPLLAKFVR Subject 11742 MRNWKAYATPGSLQLDTPITKKKNKHFTLTAEQQAAVRTSPNSTNEAFAQLFLNLGVFLKRVPKDEDISGRGNIPLVRVSQAESTDRIEQGRYSPLLAKFVR 12047
Range 2: 11744 to 12046 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 72/101(71%) | 0/101(0%) | Minus/Minus |
Query 7 RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLR 309 RTNFAKRGL LP SILSV A DT TSGILP PD SSSFGTR +KTP+FKNNCAKASFVLFG LTA CS V +K L FF I VS+ N+P VA+ FQLR Subject 11744 RTNFAKRGLYLPCSILSVDSACDTRTSGILPRPDISSSFGTRFKKTPKFKNNCAKASFVLFGDVLTAACCSAVNVKCLFFFFVIGVSNCNDPGVAYAFQLR 12046
Range 3: 11745 to 12047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 56/101(55%) | 0/101(0%) | Minus/Minus |
Query 8 SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPIT 310 +YKL KRT +LFYSI R H H WDI Y+ ++ +AF++N *+QEQLR+SFI TIR S+R LF Q E+LILFL YRR+*L* P RLPIT Subject 11745 TYKLCQKRTVPSLFYSICRLRL*HTHKWDIASS*YIFVLWYAFQENA*IQEQLRKSFIRTIR*RSYRCLLFSCQREVLILFLCYRRV*L*RPRGRVRLPIT 12047
Range 4: 11740 to 12048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 50/103(49%) | 0/103(0%) | Minus/Minus |
Query 3 FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT 311 +VQT KED +P+LFY S T A VGY L I RV K L SRT A+KLH YYS PLP+V S *+ Y FS LS L + T T SNYA+ Subject 11740 YVQTLPKEDCTFPVLFYLSTPLVTHAQVGYCLVLIYLRPLVRVSRKRLNSRTIAQKLHSYYSVTFLPLPAVQLST*SAYSFSLLSACLIVTTQGSRTPSNYAS 12048
Range 5: 11863 to 12045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 31/61(51%) | 0/61(0%) | Plus/Plus |
Query 126 RIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY 308 RIV+MKL R+CS* * F NA + Y + ISH C C R IE* R +VLF +SLY Subject 11863 RIVRMKLLRNCS*I*AFS*NAYQRTKIYQDEAISHLCVCHKRSRQIE*NREGTVLFWQSLY 12045
Range 6: 11738 to 11830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 14/31(45%) | 0/31(0%) | Plus/Plus |
Query 1 YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD 93 Y A*LE V V+ R+ D+ EK * H D Subject 11738 YDA*LEGVRDPWVVTIRHADNKEKE*ALHVD 11830
Range 7: 11870 to 12046 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 31/59(53%) | 0/59(0%) | Plus/Plus |
Query 133 YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT 309 Y+*SF A+VLE R F +TR + I R YPT A V D *NR G +QSSF +VCT Subject 11870 YE*SFCAIVLEFRRFLETRTKGRRYIRTRQYPTCACVTSGVDR*NRTGKVQSSFGKVCT 12046
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7
Range 1: 11742 to 12047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 76/102(75%) | 0/102(0%) | Plus/Plus |
Query 5 LRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR 310 +RNWK AT G L+LDT I KKK+K+F LT EQ+ AVR PNSTNEAFAQLFLNLGVFLKRVP D+D+SG+GNIPLV+VS A +TDRIE+GR+SPLLAKFVR Subject 11742 MRNWKAYATPGSLQLDTPITKKKNKHFTLTAEQQAAVRTSPNSTNEAFAQLFLNLGVFLKRVPKDEDISGRGNIPLVRVSQAESTDRIEQGRYSPLLAKFVR 12047
Range 2: 11744 to 12046 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 72/101(71%) | 0/101(0%) | Minus/Minus |
Query 7 RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLR 309 RTNFAKRGL LP SILSV A DT TSGILP PD SSSFGTR +KTP+FKNNCAKASFVLFG LTA CS V +K L FF I VS+ N+P VA+ FQLR Subject 11744 RTNFAKRGLYLPCSILSVDSACDTRTSGILPRPDISSSFGTRFKKTPKFKNNCAKASFVLFGDVLTAACCSAVNVKCLFFFFVIGVSNCNDPGVAYAFQLR 12046
Range 3: 11745 to 12047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 56/101(55%) | 0/101(0%) | Minus/Minus |
Query 8 SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPIT 310 +YKL KRT +LFYSI R H H WDI Y+ ++ +AF++N *+QEQLR+SFI TIR S+R LF Q E+LILFL YRR+*L* P RLPIT Subject 11745 TYKLCQKRTVPSLFYSICRLRL*HTHKWDIASS*YIFVLWYAFQENA*IQEQLRKSFIRTIR*RSYRCLLFSCQREVLILFLCYRRV*L*RPRGRVRLPIT 12047
Range 4: 11740 to 12048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 50/103(49%) | 0/103(0%) | Minus/Minus |
Query 3 FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT 311 +VQT KED +P+LFY S T A VGY L I RV K L SRT A+KLH YYS PLP+V S *+ Y FS LS L + T T SNYA+ Subject 11740 YVQTLPKEDCTFPVLFYLSTPLVTHAQVGYCLVLIYLRPLVRVSRKRLNSRTIAQKLHSYYSVTFLPLPAVQLST*SAYSFSLLSACLIVTTQGSRTPSNYAS 12048
Range 5: 11863 to 12045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 31/61(51%) | 0/61(0%) | Plus/Plus |
Query 126 RIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY 308 RIV+MKL R+CS* * F NA + Y + ISH C C R IE* R +VLF +SLY Subject 11863 RIVRMKLLRNCS*I*AFS*NAYQRTKIYQDEAISHLCVCHKRSRQIE*NREGTVLFWQSLY 12045
Range 6: 11738 to 11830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 14/31(45%) | 0/31(0%) | Plus/Plus |
Query 1 YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD 93 Y A*LE V V+ R+ D+ EK * H D Subject 11738 YDA*LEGVRDPWVVTIRHADNKEKE*ALHVD 11830
Range 7: 11870 to 12046 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 31/59(53%) | 0/59(0%) | Plus/Plus |
Query 133 YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT 309 Y+*SF A+VLE R F +TR + I R YPT A V D *NR G +QSSF +VCT Subject 11870 YE*SFCAIVLEFRRFLETRTKGRRYIRTRQYPTCACVTSGVDR*NRTGKVQSSFGKVCT 12046
Nucleotide Sequence (435 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
229.3 | 1313.8 | 22% | 2.242e-58 | 91% | KU674796.1 | |
226.0 | 1296.4 | 22% | 2.071e-57 | 86% | KU674797.1 | |
219.6 | 1197.4 | 22% | 1.747e-55 | 80% | JQ023131.1 | |
219.6 | 1197.4 | 22% | 1.747e-55 | 80% | NC_016509.1 | |
205.4 | 1117.3 | 20% | 3.299e-51 | 80% | KT000364.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 7
Range 1: 4294 to 4605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 97/104(93%) | 0/104(0%) | Plus/Minus |
Query 15 WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP 326 WQPYLHLSLRSTP+TPLRPSISKPCHTR L*YTSMPLSHIRRSLYT*TA*A+VIQE+LISHSSMIDMRLP*GTRSE STNRRICTPSPPRIQTHDL*IQP+L P Subject 4294 WQPYLHLSLRSTPNTPLRPSISKPCHTRPL*YTSMPLSHIRRSLYT*TA*ARVIQETLISHSSMIDMRLP*GTRSERSTNRRICTPSPPRIQTHDL*IQPSLSP 4605
Range 2: 4302 to 4604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.8 bits(493) | 0.0 | 93/101(92%) | 0/101(0%) | Plus/Minus |
Query 16 GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR 318 GSPTYTFLCGQRQTRRYAHQF+SPAI A FDTPQCRYPISDAPYIPEPLRR+*YK R*FLIAR**ICGCRKA GLN+QRIAVYVPHLLH SRHTIFKFSPR Subject 4302 GSPTYTFLCGQRQTRRYAHQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRE*YKKR*FLIAR**ICGCRKAHGLNVQRIAVYVPHLLHVSRHTIFKFSPR 4604
Range 3: 4301 to 4606 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.4 bits(479) | 0.0 | 94/102(92%) | 0/102(0%) | Plus/Minus |
Query 14 MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA 319 +AALLTPFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASNTR ADFS*LDDRYAAAVRH V*TFNESPYMYPISST PDTRSLNSA A Subject 4301 LAALLTPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNTRNADFS*LDDRYAAAVRHTV*TFNESPYMYPISSTYPDTRSLNSALA 4606
Range 4: 4299 to 4610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 96/104(92%) | 0/104(0%) | Minus/Plus |
Query 10 LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL 321 +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSA LVLLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKGVSRAA L Subject 4299 IARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAFLVLLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGVSRAASL 4610
Range 5: 4300 to 4605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.3 bits(468) | 0.0 | 95/102(93%) | 0/102(0%) | Minus/Plus |
Query 15 *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP 320 *RGLNLKIVCLD+WRRWGTYTAIR* FRP ALRQPHIYHRAMRNQRFLYY RLSGSGI*GASDMG*RH*GVSK A MAGL N*WA*RRVWR*PQRKV*VGLP Subject 4300 *RGLNLKIVCLDTWRRWGTYTAIR*TFRPCALRQPHIYHRAMRNQRFLYYSRLSGSGI*GASDMG*RH*GVSKGASMAGLRN*WA*RRVWR*PQRKV*VGLP 4605
Range 6: 4448 to 4603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 49/52(94%) | 0/52(0%) | Minus/Plus |
Query 17 TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*GC 172 T A*AVQVYRERRIWDSGIEVYQR RVWQGFEIDGRSGV GVDRKERCK*GC Subject 4448 TRA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GC 4603
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 7
Range 1: 4367 to 4669 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.0 bits(487) | 0.0 | 92/101(91%) | 0/101(0%) | Plus/Minus |
Query 16 GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR 318 GSPTYTFLCGQRQTRRYAHQFQSPAI A FD PQCRYPISDAPYIPEPLRRK*Y+NR*FLIAR**ICGCRK LN+QRIAVYVPHLLH SRHTIFKFSPR Subject 4367 GSPTYTFLCGQRQTRRYAHQFQSPAILAPFDIPQCRYPISDAPYIPEPLRRK*YENR*FLIAR**ICGCRKTHSLNVQRIAVYVPHLLHVSRHTIFKFSPR 4669
Range 2: 4359 to 4670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.2 bits(483) | 0.0 | 96/104(92%) | 0/104(0%) | Plus/Minus |
Query 15 WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP 326 WQPYLHLSLRSTP+TPLRPSISKPCHTR L*YTSMPLSHIRRSLYT*TA*AQVI+ESLISHSSMIDMRLP* T+SE STNRRICTPSPPRIQTHDL*IQP+L P Subject 4359 WQPYLHLSLRSTPNTPLRPSISKPCHTRPL*YTSMPLSHIRRSLYT*TA*AQVIRESLISHSSMIDMRLP*NTQSERSTNRRICTPSPPRIQTHDL*IQPSL*P 4670
Range 3: 4366 to 4671 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 94/102(92%) | 0/102(0%) | Plus/Minus |
Query 14 MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA 319 +AALLTPFFAVNA+HAATPINFKALPY+PPLI+LNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAV+H V*TFNESPYMYPISST PDTRSLNSA A Subject 4366 LAALLTPFFAVNAKHAATPINFKALPYSPPLIYLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVKHTV*TFNESPYMYPISSTYPDTRSLNSALA 4671
Range 4: 4364 to 4675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 96/104(92%) | 0/104(0%) | Minus/Plus |
Query 10 LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL 321 +A AEFKDRVSG+VEEMGYIYGDSLNVQT C TAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALR IKGG YGRALKLMGVAACLALTAKKGVSRAA L Subject 4364 IARAEFKDRVSGYVEEMGYIYGDSLNVQTVCFTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRYIKGGEYGRALKLMGVAACLALTAKKGVSRAASL 4675
Range 5: 4365 to 4670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.8 bits(458) | 0.0 | 93/102(91%) | 0/102(0%) | Minus/Plus |
Query 15 *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP 320 *RGLNLKIVCLD+WRRWGTYTAIR* FR LRQPHIYHRAMRNQRF YYLRLSGSGI*GASDMG*RH*G+SK A MAGL*N*WA*RRVWR*PQRKV*VGLP Subject 4365 *RGLNLKIVCLDTWRRWGTYTAIR*TFRLCVLRQPHIYHRAMRNQRFSYYLRLSGSGI*GASDMG*RH*GISKGASMAGL*N*WA*RRVWR*PQRKV*VGLP 4670
Range 6: 4513 to 4668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 50/52(96%) | 0/52(0%) | Minus/Plus |
Query 17 TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*GC 172 TCA*AVQVYRERRIWDSGIEVYQR RVWQGFEIDGRSGV GVDRKERCK*GC Subject 4513 TCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GC 4668
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7
Range 1: 4223 to 4534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 95/104(91%) | 0/104(0%) | Minus/Plus |
Query 10 LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL 321 +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKG SRAA L Subject 4223 VARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASL 4534
Range 2: 4225 to 4530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 92/102(90%) | 0/102(0%) | Plus/Minus |
Query 14 MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA 319 +AALL PFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAAAVRH V*TFNESP MYPISST PDTRSLNSA A Subject 4225 LAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALA 4530
Range 3: 4226 to 4528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 84/101(83%) | 0/101(0%) | Plus/Minus |
Query 16 GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR 318 G PT TFLC QRQTR YAHQF+SPAI ASFDTPQCRYP+SDAPYIPEPLRR+*YKNR FLIAR**ICG RKA GLN+QR+AV VPHL H SRH IFKFSPR Subject 4226 GCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPR 4528
Range 4: 4218 to 4529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 88/104(85%) | 0/104(0%) | Plus/Minus |
Query 15 WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP 326 W PYLHLSL+STP+T LRPSISKPCHTRLL*YTSMPLS IRRSLYT*TA*A+VI ES ISHSSMIDMR P*GTRSE ST+RR CTPS PRIQT DL*IQP+L P Subject 4218 WLPYLHLSLQSTPNTRLRPSISKPCHTRLL*YTSMPLSRIRRSLYT*TA*ARVI*ESPISHSSMIDMRRP*GTRSERSTSRRKCTPSLPRIQTRDL*IQPSLPP 4529
Range 5: 4224 to 4529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 85/102(83%) | 0/102(0%) | Minus/Plus |
Query 15 *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP 320 *RGLNLKI CLD+W+RWGT+TA R* FRP ALR PHIYHRAMRN+RFLYY RLSGSGI*GASD G*RH*GVSKEA MAGL N*WA* RVWR* QRKV VG P Subject 4224 *RGLNLKIACLDTWKRWGTFTATR*TFRPCALRPPHIYHRAMRNRRFLYYSRLSGSGI*GASDTG*RH*GVSKEASMAGLRN*WA*PRVWR*LQRKVQVGQP 4529
Range 6: 4372 to 4524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 46/51(90%) | 0/51(0%) | Minus/Plus |
Query 20 TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*G 172 T A*AVQVYRERRI DSGIEVYQRRRVWQGFEIDGRS V GVD KERCK*G Subject 4372 TRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*G 4524
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7
Range 1: 4223 to 4534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 95/104(91%) | 0/104(0%) | Minus/Plus |
Query 10 LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL 321 +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKG SRAA L Subject 4223 VARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASL 4534
Range 2: 4225 to 4530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 92/102(90%) | 0/102(0%) | Plus/Minus |
Query 14 MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA 319 +AALL PFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAAAVRH V*TFNESP MYPISST PDTRSLNSA A Subject 4225 LAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALA 4530
Range 3: 4226 to 4528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 84/101(83%) | 0/101(0%) | Plus/Minus |
Query 16 GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR 318 G PT TFLC QRQTR YAHQF+SPAI ASFDTPQCRYP+SDAPYIPEPLRR+*YKNR FLIAR**ICG RKA GLN+QR+AV VPHL H SRH IFKFSPR Subject 4226 GCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPR 4528
Range 4: 4218 to 4529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 88/104(85%) | 0/104(0%) | Plus/Minus |
Query 15 WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP 326 W PYLHLSL+STP+T LRPSISKPCHTRLL*YTSMPLS IRRSLYT*TA*A+VI ES ISHSSMIDMR P*GTRSE ST+RR CTPS PRIQT DL*IQP+L P Subject 4218 WLPYLHLSLQSTPNTRLRPSISKPCHTRLL*YTSMPLSRIRRSLYT*TA*ARVI*ESPISHSSMIDMRRP*GTRSERSTSRRKCTPSLPRIQTRDL*IQPSLPP 4529
Range 5: 4224 to 4529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 85/102(83%) | 0/102(0%) | Minus/Plus |
Query 15 *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP 320 *RGLNLKI CLD+W+RWGT+TA R* FRP ALR PHIYHRAMRN+RFLYY RLSGSGI*GASD G*RH*GVSKEA MAGL N*WA* RVWR* QRKV VG P Subject 4224 *RGLNLKIACLDTWKRWGTFTATR*TFRPCALRPPHIYHRAMRNRRFLYYSRLSGSGI*GASDTG*RH*GVSKEASMAGLRN*WA*PRVWR*LQRKVQVGQP 4529
Range 6: 4372 to 4524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 46/51(90%) | 0/51(0%) | Minus/Plus |
Query 20 TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*G 172 T A*AVQVYRERRI DSGIEVYQRRRVWQGFEIDGRS V GVD KERCK*G Subject 4372 TRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*G 4524
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 7
Range 1: 510 to 809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 88/100(88%) | 0/100(0%) | Minus/Plus |
Query 10 EFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL 309 EFKDRVSG+VEEMGYIYGDSLNVQT CL AAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KL+GV CLALTAKKG SRAA L Subject 510 EFKDRVSGYVEEMGYIYGDSLNVQTVCLXXAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLIGVXXCLALTAKKGASRAASL 809
Range 2: 509 to 805 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 86/99(87%) | 0/99(0%) | Plus/Minus |
Query 14 MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNS 310 +AALL PFFAVNA+H TPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAA RH V*TFNESP MYPISST PDTRSLNS Subject 509 LAALLAPFFAVNAKHXXTPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAXXRHTV*TFNESP*MYPISSTYPDTRSLNS 805
Range 3: 510 to 803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 79/98(81%) | 0/98(0%) | Plus/Minus |
Query 16 GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKF 309 GSPT TFLCGQRQT A+QF+SPAI A FDTPQCRYPISDAPYIPEPLRRK*YKNR FLIAR *ICG KA LN+QRIAV V HL H SRHTIFKF Subject 510 GSPTCTFLCGQRQTXXXAYQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRK*YKNRRFLIARR*ICGXXKAHSLNVQRIAVNVSHLFHVSRHTIFKF 803
Range 4: 493 to 804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.6 bits(390) | 0.0 | 83/104(80%) | 0/104(0%) | Plus/Minus |
Query 15 WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP 326 WQPYLHLSLRSTP+T R SISKPCHTR L*YTSMPLSHIRRSLYT*TA*AQVI ES ISHSS IDMR GT+SE STNRR C PS PRIQTHDL*I P Subject 493 WQPYLHLSLRSTPNTXXRLSISKPCHTRPL*YTSMPLSHIRRSLYT*TA*AQVI*ESQISHSSTIDMRXXXGTQSERSTNRRKCIPSLPRIQTHDL*IXXXXXP 804
Range 5: 511 to 804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 78/98(80%) | 0/98(0%) | Minus/Plus |
Query 15 NLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP 308 NLKIVCLD+W+RW T+TAIR* FR A PHIY RAMRN RFLYYLRLSGSGI*GASDMG*RH*GVSK A MAGL N* A VWR*PQRKV VGLP Subject 511 NLKIVCLDTWKRWDTFTAIR*TFRLCAXXXPHIYRRAMRNLRFLYYLRLSGSGI*GASDMG*RH*GVSKGASMAGLRN**AXXXVWR*PQRKVQVGLP 804
Range 6: 647 to 802 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 47/52(90%) | 0/52(0%) | Minus/Plus |
Query 17 TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*GC 172 TCA*AVQVYRERRIWDSGIEVYQR RVWQGFEID R V GVDRKERCK*GC Subject 647 TCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDRRXXVFGVDRKERCK*GC 802