Nucleotide Sequence (374 letters)
Query ID: | ds2016-122_14 |
Query definition: | No definition line |
Query length: | 336 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
90.9 | 475.6 | 17% | 4.012e-21 | 47% | KP317931.1 | |
57.0 | 111.6 | 11% | 1.276e-06 | 56% | AB256328.1 | |
57.4 | 57.4 | 7% | 9.284e-07 | 71% | AY561239.1 |
Alignments
Human respiratory syncytial virus isolate Kilifi_10891_52_RSVA_2008, partial genome
Sequence ID: KP317931.1 Length: 5636 Number of Matches: 9
Range 1: 4961 to 5149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 38/63(60%) | 0/63(0%) | Minus/Plus |
Query 79 RAQIAKAILSKKNTARGITSLDFKVYNRTTVTKTAWYWYQNRDIDQWNRTELSEITPHIYNCL 267 +AQIAKAIL +K+ A GIT F +Y ++TVTKT WY Y+N IDQWNR E EI PH YN L Subject 4961 KAQIAKAILCRKHKAGGITFPKFNLYYKSTVTKTTWYCYRNMHIDQWNRIEGPEIMPHTYNHL 5149
Range 2: 4875 to 4949 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 12/25(48%) | 0/25(0%) | Minus/Plus |
Query 277 VQHYFYQAANSIFHRTRKKILEIM* 351 +Q YFYQ +IFH+ RK +L+ +* Subject 4875 IQ*YFYQTTYNIFHKIRKSVLKFI* 4949
Range 3: 4957 to 5148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 35/64(55%) | 0/64(0%) | Minus/Plus |
Query 80 RKSPNSQSNPKQKEHSQRHHIT*LQSV**DYSNQNSMVLVPKQRYRSMEQNRALRNNTAYLQLS 271 ++S NS+SNP QK S RHHI +Q + YSNQN+MVL+ K +R MEQNR RNN +LQ S Subject 4957 QQSSNSKSNPMQKT*SWRHHIPQIQLILQVYSNQNNMVLLQKHAHRPMEQNRGSRNNATHLQPS 5148
Range 4: 4853 to 4948 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 15/32(47%) | 0/32(0%) | Minus/Plus |
Query 278 YGPKATIGSTLFLSSCQLHFSQN*KKNSRNHV 373 Y K S +FLS+ HFSQN*K S H+ Subject 4853 YHSKQFTDSMIFLSNYLQHFSQN*KICSEIHI 4948
Range 5: 4967 to 5149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 33/61(54%) | 0/61(0%) | Plus/Minus |
Query 79 QTVVDMRCYF*ELCSVPLIYISVLVPVPCCFGYCSPIIHFEVK*CDASGCVLFA*DCFGYL 261 Q VV + YF L SVPL+Y+ V V VPCCFGYC ++ E CDAS + A*DCF YL Subject 4967 QMVVGVWHYFWTLYSVPLVYVHVSVAVPCCFGYCRLVV*VEFGECDASSFMFSA*DCFCYL 5149
Range 6: 4884 to 4946 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 14/21(67%) | 0/21(0%) | Plus/Minus |
Query 280 HDF*NFFSSSVKNGVGSLIEI 342 ++F N FS+ VKN VGSLIEI Subject 4884 YEFQNRFSNFVKNVVGSLIEI 4946
Range 7: 5043 to 5150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 23/36(64%) | 0/36(0%) | Plus/Minus |
Query 78 ADSCRYAVLFLRALFCSIDLYLCFGTSTMLFWLL*S 185 +D CR LFL LFCSI L CF +STMLFWLL*+ Subject 5043 SDGCRCVALFLDPLFCSIGLCACFCSSTMLFWLL*T 5150
Range 8: 4960 to 5019 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 13/20(65%) | 0/20(0%) | Plus/Minus |
Query 209 DVMPLAVFFLLRIALAIWAL 268 +VMP A+ FL RIA AI AL Subject 4960 NVMPPALCFLHRIAFAI*AL 5019
Range 9: 4968 to 5147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 32/60(53%) | 0/60(0%) | Minus/Plus |
Query 81 K*PKQS*AKRTQPEASHHLTSKCIIGLQ*PKQHGTGTKTEI*INGTEQSSQK*HRISTTV 260 K* KQS A+ + EASH S LQ*PKQHGT T+T * NGTE QK* TT+ Subject 4968 K*QKQSYAENIKLEASHSPNSTYTTSLQ*PKQHGTATETCT*TNGTE*RVQK*CHTPTTI 5147
Homo sapiens DNA, HIV 1 integration site, isolate:011102Pt.2#518
Sequence ID: AB256328.1 Length: 400 Number of Matches: 2
HIV 1 isolate PCM039 from Colombia genomic sequence
Sequence ID: AY561239.1 Length: 8696 Number of Matches: 1