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Queries

Nucleotide Sequence (373 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
373

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
264.1 917.9 38% 4.068e-70 51% NC_001948
49.6 49.6 11% 1.474e-05 48% NC_005343
49.2 49.2 11% 2.025e-05 49% NC_008266
52.4 52.4 10% 2.192e-06 47% NC_006550
48.3 48.3 10% 3.822e-05 47% NC_002468

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 2534 to 2893 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
264.1 bits(570) 0.0 102/120(85%) 0/120(0%) Plus/Plus
Query        8  VTKTRNPVEGNHCSLTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFVSPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCYSCHNFHKFKDLINN  367
                ++K+RN V GNHCSLTI P+EFFEMPRGMQ N+FHGVSNC  GRVSLTFRRQKLEDDD IF++PQVPIE NHEKLDR+MWQMGLHGIKKSIS+NGTSFTSDLCSC+SCHNFHKFKDLINN
Subject   2534  ISKSRNLVGGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINN  2893

Range 2: 2548 to 2898 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.7 bits(340) 0.0 83/117(71%) 0/117(0%) Minus/Minus
Query       22  LGLFIRSLNL*KL*QE*QEQRSDVKLVPLIEMDFLIP*RPICHMXXXXXXXXXSMGT*GLTKIWSSSSSFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSLGSIVRLQWFPSTGF  372
                L L +RSLNL*KL QE QE RS+VKLVP IE+DFLIP*RPICH+ RSSFS*  SMGT G  KI SSSS+FWR  V DT P  QLETPWK L C+P GISKNS G IVRLQ  P T F
Subject   2548  LKLLMRSLNL*KLWQEKQEHRSEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMKIKSSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPPTKF  2898

Range 3: 2531 to 2893 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 67/121(55%) 0/121(0%) Minus/Minus
Query        5  IVYQILEFVKVMTRIARTKV*CKACAID*NGFLDSMKAHLPHVSIKLLMILLNGHLRANKNLVIIFQFLASECQRHSPTQTIGNAMEKVALHTSRHLKKLARFNCQAAVVSFNWISSLSNS  367
                ++ +ILEF+KV+ R  R  V* K  AI  N FL+SMKAHLPH S+KL MI LNGHL   ++ +IIFQ LA + QR+ P +TIGN ME +ALH  RH +KL   NCQAA+++ N IS L+NS
Subject   2531  VIDEILEFMKVVARETRA*V*GKTRAIHRNRFLNSMKAHLPHTSVKLFMIELNGHLWIYEDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITPNQISRLTNS  2893

Range 4: 2547 to 2882 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 58/112(52%) 0/112(0%) Minus/Minus
Query       21  DP*ICESYDKNSKNKGLM*SLCH*LKWIS*FHEGPSATCFDQASHDFAQWALEG*QKFGHHLPVFGVGMSKTLSHSDNWKRHGKSCSAYLEASQKTR*VQLSGCSGFLQLDF  356
                DP*I ES  K +K+ GL *+ CH  K IS*FHEGPSAT F QA HD AQWA     +  HHLP FG   S   + + NWK HG +C A   A +KT   QLSGC+ + Q +F
Subject   2547  DP*IYESCGKRNKSIGLR*NSCHS*K*IS*FHEGPSATYFGQAFHD*AQWAPVDL*RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQPNF  2882

Range 5: 2727 to 2882 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 33/52(63%) 0/52(0%) Plus/Plus
Query      201  KCPLSKIMRSLIETCGRWAFMESRNPFQSMAQALHQTFVLAILVITFTNSRI  356
                +CPLS IM+SL E CGRWAFME RN F  MA+ L QT+ L  L  TF NSRI
Subject   2727  RCPLSSIMKSLTEVCGRWAFMELRNLFL*MARVLPQTYALVSLATTFINSRI  2882

Range 6: 2535 to 2705 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 29/57(51%) 0/57(0%) Plus/Plus
Query        9  LLRLEIQLKETTAA*QLNLASFLRCLEVCRATFSMAFPIV*VGECL*HSDAKNWKMM  179
                L+  EI L    AA*QL   SF +CL  C A  SM FPIV  G   *   AK+WKMM
Subject   2535  LVSREIWLGVIIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMM  2705

Range 7: 2569 to 2883 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 56/105(53%) 0/105(0%) Plus/Plus
Query       43  LQPDN*T*RVF*DASRYAEQLFPWRFQLSEWESVFDIPTPKTGR**PNFC*PSSAH*AKS*EA*SKHVADGPSWNQEIHFNQWHKLYIRPXXXXXXXXXXQIQGS  357
                LQPDN    VF +A  +A QL PW FQL     + D+  PK GR** +    + AH*A+S*+A* K+VADGPSWN EI+F +WH+ Y+RP+ L  L  LS IQGS
Subject   2569  LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR**FDLHKSTGAH*AQS*KA*PKYVADGPSWN*EIYFYEWHEFYLRPMLLFLLPQLS*IQGS  2883

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 1

Range 1: 2395 to 2520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 20/42(48%) 0/42(0%) Plus/Plus
Query       32  EGNHCSLTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFR  157
                +G+   L + PS+ F MP G Q +  H V  C  GRVSLTFR
Subject   2395  KGHLTKLHLRPSQCFTMPHGFQESHKHAVEGCSKGRVSLTFR  2520

Narcissus common latent virus, complete genome

Sequence ID: Length: 8539 Number of Matches: 1

Range 1: 2436 to 2558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 20/41(49%) 0/41(0%) Plus/Plus
Query       35  GNHCSLTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFR  157
                G+  S+ ++ + FFEMP G+QS   + VS+C  GR SLTFR
Subject   2436  GSVRSVVLDGAVFFEMPHGLQSTHKYSVSDCSPGRASLTFR  2558

Sweet potato chlorotic fleck virus, complete genome

Sequence ID: Length: 9104 Number of Matches: 1

Range 1: 2598 to 2711 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 18/38(47%) 0/38(0%) Plus/Plus
Query       47  SLTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRR  160
                S  +    +FEMPR  Q  ++HGV  C  GR+S+TFRR
Subject   2598  SFELVEDSYFEMPRDFQEKYYHGVQGCSMGRISMTFRR  2711

Cherry necrotic rusty mottle virus, complete genome

Sequence ID: Length: 8432 Number of Matches: 1

Range 1: 2653 to 2766 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 18/38(47%) 0/38(0%) Plus/Plus
Query       50  LTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQ  163
                +T+   E+  MPRG Q ++ HGV +  +GR+SLTFR Q
Subject   2653  ITLSHGEYILMPRGFQQSYKHGVKDTQAGRISLTFRLQ  2766

Nucleotide Sequence (1316 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
132
264
396
528
660
792
924
1056
1188
1316

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 3323 to 4636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
979.8 bits(2132) 0.0 403/438(92%) 0/438(0%) Minus/Plus
Query        2  LSTDGLALKAGIRSFVESESTVDPALSSLTIQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT  1315
                LSTDGLALKAGIRSFVESE  V P LS+  I KQL ENAYAENEMIALFCIRHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREV+VLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDD CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRL+EGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMT
Subject   3323  LSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMT  4636

Range 2: 3466 to 4635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
659.5 bits(1433) 0.0 312/390(80%) 0/390(0%) Plus/Minus
Query        3  VMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSARSKLGKYVIFDPFKESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRIPHRGHSLSPNFQLTSYSGVIMISLT*CLMQN  1172
                V+EPFLK  G+L+SNIGFTNL LS LYLY  PS+SL+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI  +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA  TL  SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPV+PPSKHP +FSARSKLGK VI DPF E +SRADRLTFR+SSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP  SHLAQMSKASKASAKYIM RPPP* SSSK+*LVLGLH+*  TSTSRLPSA+A+AVIMQP  GA GWK* D + RIPHRGHS SPNFQLTSYSGVI I LT C MQN
Subject   3466  VIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQN  4635

Range 3: 3325 to 3402 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 18/26(69%) 0/26(0%) Plus/Minus
Query     1236  ERAGSTVDSLSTNDLIPAFKARPSVL  1313
                ER+G T  SLST D IPAF+A PSVL
Subject   3325  ERSGLTKRSLSTKDRIPAFRASPSVL  3402

Range 4: 3323 to 4636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
463.4 bits(1005) 0.0 216/438(49%) 0/438(0%) Plus/Minus
Query        2  SHGAFFEVTG*S*IKHWIYEPPTLQVVPI*LSFDQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*INVTRGE*LNFIKDHAMTSL*ACNFSKKDFKGNDIPTLLL*FACLHHLTLIIHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCAKHDCQFSLFDVRSRHSSKPRF*IIKFLITYHAS*TSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPVTNLFDMPNVFIRYVKQSRYAPAWINNLNFTIDITFGTDVESFKSFC*IHHVQTPPLT*FFKNVIGAGST*VIKNLYLTPSKC*CNSCDHAAIKRGTRLEMIGL*TQNST*GPLTFPKLPAHLIFWCYNDQPHMMPNAE*SNHFILCVSIFXXXXXXXXXXXXWVNC*LTFHKRPYSCLQS*TICAK  1315
                SH A FEVT  S* +HW+++PP   V+PI  +  Q +YVTL S QN  I LR+ICALT ITSK +ES+T  NK+ *I+V+R + L+ IK+H + SL +CNFSK++ K   IP  LL*  C  +   IIHF++ FD*IC*S    +K Y+F+ R  HE LV ETL SPKC KHD QF   ++ SR++ KPRF I + LITY+AS*   Q  L+ F PLK W++ Y  P+  K+++  S +  Q IH Y LR +T   +MP V I YVKQ R     IN+ N +I ITF  +V+  KSF *IHHV+ P LT   KN+I AGST +I ++  TPSKC* N CDHA I+ G  LE+I    +NST*GPLTFP+ P + IFWC + +P+++PNAE* +H IL +SI  +L      *K W    LT H+R  + L   +I AK
Subject   3323  SHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK  4636

Range 5: 3322 to 4635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
356.6 bits(772) 0.0 204/438(47%) 0/438(0%) Minus/Plus
Query        3  S*HRWSSFEGRNKVVCGK*VNS*PSSFKPNYTEATWRKCLRRE*NDCFILH*ASCEADHYNTRI*GELEVWGK*VAPMWNSVFKVQSFPTLCPS*WLHDHSYCISTWKA*GRGS*LLM*TQHQSHF*RTMSRGGSEHDVFSRSF*SFRHLCQM*CQW*N*GY*SRRAHICSV*HNE*TH*ACRKDW*RASKYKGG*AAKS*TISS*PAFFERVKDNIFSKF*AGGKTSGVLAGRFNWRDK**EI**FKTLACWSVYF*HQTKRIDSRAWHIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQKGPGNG**V*GGEGRQIKEGGLGCRYL*SLS*KSYRPKGWSLRDL**SSAIPPWLH*SMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEAGRRKVI*VQLGESEVRKSNV*FKITL*LQKRLHD  1316
                +*H W+  +GR  +  G+*      SF P+      R+CL RE*+D  ILH A  +A   +TRI*  LE+ G+*VAPMWNS+  ++S PT+ P+ WLHDHS+C STWKA*     L +*TQH S+F*  +S  G  HDVFS SF*   HL  M* +W +*  *S   + C V*HN * H AC ++ *  S++K G* A+   I     F E V +N+  K *AG K + + A   NWR K**E+ * KTLA W +Y+*+  K ID RAW+IWGW+EF +QE HE++*  I N+C +    SKFNQK   NG**+     R +KEG +GC   *   *KS R +GW L D **   +  W+H SM + Y+ * FH +CW*S+SKHI* +K    FG * E*H      + +*V   + EV + NV  K  + LQK L D
Subject   3322  T*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDD  4635

Range 6: 3504 to 4637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
300.3 bits(649) 0.0 180/378(48%) 0/378(0%) Plus/Minus
Query        1  QSWSLF*SYRVILNQTLDLRTSDSPSCTYMTFLRPASICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDQCNQGGIAELHQRSRNDQPLGL*LF*ERLQR*RHPNPPSLICLPSPPYTHHPFPGPF*LNLLEPA*VRQMLQIFLQIXXXXXCIGNSFQPQMCQARLSILFV*CQK*TLQQAKVLNH*ISHHLSRQLNLPASTPEVFPPAQNLENMLSLTRSKKAGQELIV*LFAAHPPLYFEARYQSFRHA*CVHSLCQTEQICARLD**PQFXXXXXIWHRCRKLQKLLLNTSCSDPPLDIVLQKCDWCWVYISN*EPLPHAFQVLMQ*L*SCSH*EGHKVGNDWTLNTEFHIGATHFPQTSSSPHILV  1134
                QS S F*S   +L +TL  +TS     TY    +   +CHS Q PK    F +HMCFD DHQQ +*K H  *   ID+C Q      HQ+S + QP  L LF* + Q+  HP  PSL  L     ++HPF   F*LNLL+    +Q L+I+ Q  S*+SC  NS QPQM QAR SI   * Q *  Q+AKVL+H* SHHL RQL   A+    F PAQ+L + L  T S K  +  I *  A HP L  E  Y   +HA C H LCQT Q     D*  Q  H +HI  +C++ QKL LNTSC  P  D   QK D CWVY  N     HAFQVL Q L*SC+H  G  VG+D     EFHIGATH P+ S+  HILV
Subject   3504  QSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV  4637

Range 7: 3324 to 3491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 22/56(39%) 0/56(0%) Plus/Minus
Query     1147  ASHDA*CRIKQSFHSLRKHFLQVASV*LGLKELGQLLTHFPQTTLFLPSKLDHLC*  1314
                A   A CRI +S HS  KH L +    LGLK+L     H P+   + P    H C*
Subject   3324  ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*  3491

Range 8: 3504 to 4190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.6 bits(449) 0.0 115/229(50%) 0/229(0%) Minus/Plus
Query      448  HQNMR*AGSLGKVSGPYVEFCV*SPIISNLVPLLMAA*SQLLHQHLEGVR*RFLITYVDPAPITFLKNYVKGGV*T*CI*QKLLKLSTSVPNVMSMVKLRLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLSGRKNFRGACWEV*LA**VMRNLMIQNLGLLECLLLTSNKEN*QSCLAHLGLERVSYTRAS*RDLKEN  1134
                HQNM+  G+ GKVSGPYVEF   + I SN  P  M A*SQ L QHLEGV+    I  VDPA I FL+++V+ G  T*CI* KLL+  T   NV+ M +L+ LI+   +L CLT* M+T GM ++ V  L+ *+WM+C + +D     F * G +*   Q LSG K+ +  C   *LA *VMR+ ++QNLG L  LLL  ++ N* SCL HLGL RVS TR S*+ L+ N
Subject   3504  HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN  4190

Range 9: 4467 to 4637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 30/57(53%) 0/57(0%) Minus/Plus
Query        1  KAHMILKKIELFWVLNRVTY*GWSKESHIGTTWRVGGS*IQCLIQDYPVTSKKAP*L  171
                KAHM  K+I  FW L+RVTY    +   IG T + GG * QC  QD  VTSK+A *L
Subject   4467  KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*L  4637

Range 10: 4224 to 4412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 31/63(49%) 0/63(0%) Minus/Plus
Query      226  QIQSKGTWKWMMSVRW*RQANQRRRVGMSLPLKSFLEKLQA*RLVIA*SLMKFSYSPLVTLIY  414
                QIQSK   KWM++ +  +Q  QRR+ GM   L+  LEKLQ *RL   * LM+ S   L T IY
Subject   4224  QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY  4412

Range 11: 3369 to 3491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 18/41(44%) 0/41(0%) Minus/Plus
Query     1147  WKVSQQLTQLFQA*LYRSNLEKMLTQRMK*LLYSALGIM*G  1269
                W+VS    Q+FQ   + +N ++ML  RM+*  YSA G  *G
Subject   3369  WRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*G  3491

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 6

Range 1: 3466 to 4299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.0 bits(559) 0.0 115/278(41%) 0/278(0%) Minus/Plus
Query      392  IQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  1225
                + KQL  N +AE E +A FC  + +RL ++    E +W F   E      L  + NHF+PC P+NGC+I AIASAL RREV+VL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L      G TGV+        K   A +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3466  LSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4299

Range 2: 4360 to 4689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 57/110(52%) 0/110(0%) Minus/Plus
Query        2  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT  331
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L +     I +AGDPCQS YDS  DR I    +SDI+R + G+SY++N+ S+RF NP+F  RLPCN  K  +T
Subject   4360  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLT  4689

Range 3: 3567 to 3917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 41/117(35%) 0/117(0%) Plus/Minus
Query      774  CLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRIPHRGHSLSPNFQLTS  1124
                C  CSF   N A + P  L    SP  S L Q+   S +  +  + +P P  +SSK     GL    +TSTS   SA+AIA++  PL G QG K L ++  +     S   N Q+ S
Subject   3567  CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS  3917

Range 4: 4164 to 4265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/34(53%) 0/34(0%) Plus/Minus
Query      426  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVN  527
                LG+T V  FP D  M  L R+LFP PNVP   +N
Subject   4164  LGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN  4265

Range 5: 4503 to 4670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 27/56(48%) 0/56(0%) Plus/Minus
Query       21  KLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPA  188
                KLQG+L   IGF NL L  L L   P   L MSL    KI  S   S  L  GSPA
Subject   4503  KLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA  4670

Range 6: 4404 to 4463 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/20(75%) 0/20(0%) Plus/Minus
Query      228  RSM*PGGNS*TSSKITQ*PA  287
                RSM*PGGNS* SS  T *P+
Subject   4404  RSM*PGGNS*ISSMTTV*PS  4463

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 10

Range 1: 3326 to 4030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.4 bits(418) 0.0 83/235(35%) 0/235(0%) Minus/Plus
Query      515  KQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVV  1219
                +Q+  + +AE E +A FC  + ++L +++    V+W F  ++      L  + NHF PC P+NGC++ AIASALGRRE++VL  L +P    ++E+ C G G  +  L   FE F I A+ D  G +  +N  G+ISA F +  EH+ H++++     S  + +L  V +SAL LL +NGS+I+Y PS +RA+ L   L  G TGV+  E +N  +  + G+  +  +++  T++
Subject   3326  RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII  4030

Range 2: 4208 to 4516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 59/103(57%) 0/103(0%) Minus/Plus
Query       23  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCN  331
                V+TFE+FL  +  +K GH VI DE+QLFPPGY+DL L+   SD  + LAGDPCQS YDS+ DR +     SDI+ ++ GKSYRYN+ S+RF NP+F SRLPC+
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCS  4516

Range 3: 4030 to 4107 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 12/26(46%) 0/26(0%) Minus/Plus
Query      435  WHIWGWKEFPIQELHEEI*RKICNIC  512
                W++W W E  I E+H +I RK  N C
Subject   4030  WYLWMW*EHSI*EVHIKITRKSYNFC  4107

Range 4: 3995 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 32/68(47%) 0/68(0%) Minus/Plus
Query      344  SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKK  547
                ++I +R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K +  GK  K
Subject   3995  ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 5: 4267 to 4371 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 18/35(51%) 0/35(0%) Minus/Plus
Query      168  DL**SSAIPPWLH*SMSSCYSQ*RFHLSCW*SLSK  272
                D ** SA+P WL *S S  +  *    SCW SL K
Subject   4267  DH**DSALPSWLS*SHSGLH*L*HQPCSCWRSLPK  4371

Range 6: 4214 to 4495 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 31/94(33%) 0/94(0%) Plus/Minus
Query       44  KHWIYEPPTLQVVPI*LSFDQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*INVTRGE*LNFIKDHAMTSL*ACNFSKKDFKG  325
                K  I +P T  +VP+ L+      V +   +  +I L I+  L  I+SK    V A+  +  I +TR E LN I DH +  L      KK  KG
Subject   4214  KDRIPKPLTQYIVPVALTIQNVDDVRIRIGKKVTIILAIVVTLAGISSKNKVDVRASADQNEIKITRREELNLINDHRVPLLNGSYSHKKQLKG  4495

Range 7: 3466 to 3633 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 28/56(50%) 0/56(0%) Plus/Minus
Query      912  RPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRI  1079
                +P P  +SS   L  GL K  RTS S LP ADAIA+  QPL G  G K*L +  R+
Subject   3466  KPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV  3633

Range 8: 4030 to 4128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/33(55%) 0/33(0%) Plus/Minus
Query      414  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVP  512
                AR  LGET V  FP D  M  L R L P P VP
Subject   4030  ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP  4128

Range 9: 4207 to 4365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 26/53(49%) 0/53(0%) Plus/Minus
Query      174  QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  332
                QGSPAR    S  +  R RS *PGG S* SS IT  P       +R +SKV+T
Subject   4207  QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST  4365

Range 10: 3506 to 3571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 11/22(50%) 0/22(0%) Plus/Minus
Query      974  KNLYLTPSKC*CNSCDHAAIKR  1039
                KN+YL+P+  *CN  +H  I R
Subject   3506  KNIYLSPA*G*CNCPNHTTINR  3571

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 7

Range 1: 3469 to 4095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.8 bits(421) 0.0 84/209(40%) 0/209(0%) Minus/Plus
Query      599  IQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  1225
                + KQL  N +AE E +A FC  + ++L ++    E +W F   E      L  + NHF+PC P+NGC+I AIASAL RREV+VL  L +P+   +F+E+ +G G ++  L+  FE F IC   D  GE+ ++N GGRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L   L  G TGV+
Subject   3469  LSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL  4095

Range 2: 4363 to 4692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 56/110(51%) 0/110(0%) Minus/Plus
Query        2  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT  331
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R++ G++Y++N+ S+RF NP+F  RLPCN  K  +T
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLT  4692

Range 3: 4153 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      392  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  541
                +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4153  VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 4: 3570 to 3911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 41/114(36%) 0/114(0%) Plus/Minus
Query      783  CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRIPHRGHSLSPNFQLTS  1124
                CSF   N A + PP L    SP  S L Q+ K SK+  +  + +P P  +SS      GL +  +TSTS    A+A+A++ QP  G QG K*L  + ++     S   N Q+ S
Subject   3570  CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS  3911

Range 5: 4161 to 4280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query      414  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  533
                AR  LGET V  FP D  M  L R+L P P VP    N L
Subject   4161  ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL  4280

Range 6: 4506 to 4691 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 28/62(45%) 0/62(0%) Plus/Minus
Query        3  VMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPA  188
                V     KL G+L +  GF N  L  L L   P   L MSL    KI LS   S  L*QGSPA
Subject   4506  VSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA  4691

Range 7: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 15/35(43%) 0/35(0%) Plus/Minus
Query      228  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  332
                +S+ PGG S* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 9

Range 1: 3465 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.2 bits(411) 0.0 82/209(39%) 0/209(0%) Minus/Plus
Query      599  IQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  1225
                + KQL  N +AE E +A FC  + +RL ++    E +W F   E      L  + NHF+PC P+NGC+I AI+SAL RREV+VL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG+++ Y PS +RA  L      G TGV+
Subject   3465  LSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL  4091

Range 2: 4359 to 4688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 56/110(51%) 0/110(0%) Minus/Plus
Query        2  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT  331
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R++ G+SY++N+ S+RF NP+F  RLPCN  K  +T
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLT  4688

Range 3: 4149 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      392  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  541
                + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4149  VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 4: 3629 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 38/93(41%) 0/93(0%) Plus/Minus
Query      783  CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*L  1061
                CSF   N A + P  L    SP  S L Q+ K S    +  M +P P  +SSK     GL    +TSTS   SA+ IA+I  P  G QG K*L
Subject   3629  CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*L  3907

Range 5: 4359 to 4688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 31/110(28%) 0/110(0%) Plus/Minus
Query        2  SHGAFFEVTG*S*IKHWIYEPPTLQVVPI*LSFDQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*INVTRGE*LNFIKDHAMTSL*ACNFSKKDFKGND  331
                S     EV   S +KHWI EP T  +  +    +    +T  ++++  I   +I  LTR+TS  +  +    K   I +   + LNFI  +++T L A     + FK  D
Subject   4359  SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD  4688

Range 6: 4157 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/36(50%) 0/36(0%) Plus/Minus
Query      426  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  533
                LGET V  FP D  M  L ++LFP PNVP   ++ L
Subject   4157  LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL  4264

Range 7: 4502 to 4672 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 29/57(51%) 0/57(0%) Plus/Minus
Query       18  LKLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPA  188
                L+LQGNL  N GF NL L  L L   P   L +SL    K+ LS  +S  L*QGSPA
Subject   4502  LRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA  4672

Range 8: 4149 to 4268 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query      422  PPR*DKCYKFSFRSLHEALV*ETLSSPKCAKHDCQFSLFD  541
                PP *DK Y FS   L+E L * TLS+ + +K+  QF L D
Subject   4149  PPW*DKSYGFSRGLLNELLE*GTLSASERSKNHYQFPLMD  4268

Range 9: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      228  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  332
                +S+*PGG S* SS  T *P+          SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Nucleotide Sequence (357 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
357

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
241.2 763.5 28% 3.079e-63 39% NC_001948
144.5 263.0 46% 3.859e-34 31% NC_011525
144.9 194.1 35% 2.809e-34 49% NC_028868
143.6 241.0 52% 7.284e-34 36% NC_005343
141.7 213.4 26% 2.595e-33 49% NC_014730

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 476 to 829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
241.2 bits(520) 0.0 97/118(82%) 0/118(0%) Plus/Plus
Query        3  ISSSDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK  356
                ISSSDKS+ VVS+KGIGDS++L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+I+  Q+LFAPDGNW EMYSQPLS RYLLK
Subject    476  ISSSDKSSQVVSRKGIGDSNTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQLLFAPDGNWNEMYSQPLSCRYLLK  829

Range 2: 514 to 828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.3 bits(374) 0.0 81/105(77%) 0/105(0%) Minus/Minus
Query       41  LSRYLLDSGCEYISHQLPSGAKSI*PSEILYW*AQGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTNFLSESESPIPF  355
                LSRYL D GCEYIS QLPSGAKS     ILYW*AQG RLSGEPT  SGGITAVA+SMLGL TS+K++RS IDQ* ISS RKRFLAPVEITRGTN  S  ESP+PF
Subject    514  LSRYLHDKGCEYISFQLPSGAKSSWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF  828

Range 3: 476 to 829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 51/118(43%) 0/118(0%) Minus/Minus
Query        3  LKQIPT*QWL*IHFTPITIRGKEHLTLRNSILVSPRI*AFRRANKDFRGYYSRCKKHVGSDHLQKGNEITYRPVMDLIMKEKISCTGGDYTRNQLFERVRITDPLLADNMVRLVTRAY  356
                L+Q+  *Q L*+H  P+ I  +E L   + ILV PR+    RAN+ F   Y  C++H    ++QK ++IT  PV++LIM++KI  T G+YT +Q  E VRIT+ L  DN+   VTR Y
Subject    476  LEQVSA*QRL*VHLIPVAIWCEEQLVAIDFILVGPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQSPECVRITNALSTDNLT*FVTRTY  829

Range 4: 477 to 830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 49/118(42%) 0/118(0%) Minus/Minus
Query        4  P*ADTYLTVVVNTFHTNYHPGQRAFDPQKFYTGKPKDLGFQESQQGFQGVLQPLQEACWV*PPPER**DHV*TSNGSHHEGKDFLHRWRLHEEPTF*ASQNHRSPSC*QHG*TCH*SL  357
                P*A   +T VV+T H++ H  +RA     FYTG+PK     ESQ      L  L  AC     P+ * DH  TS+ SHH  KD  H W+LH  P      NH+ P  *Q    CH*+L
Subject    477  P*AGICMTKVVSTSHSSCHLVRRAVGCH*FYTGRPKG*DSLESQPALLEGLLQLPRACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPISGVC*NHQCPFY*QPDLICH*NL  830

Range 5: 478 to 777 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 45/100(45%) 0/100(0%) Plus/Plus
Query        5  KL**QV*PCCQQEGDR*F*LAQKVGSSCNLHRCKKSFPS**DPLLVYT*SHYLSGGGQTQHASCNGCNTP*NPCWLS*KPKSLGLPV*NF*GSNALCPGW  304
                K **Q+   CQ +G  *F*   ++G +CN HRC++SF +**D LLV  *S    G  Q +HA  N  N   +  WLS +   LGLPV*N     AL   W
Subject    478  KF**QIKSGCQ*KGHW*F*HTPEIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHALGNCSNPSRSAGWLSRES*PLGLPV*NQWQPTALRTRW  777

Range 6: 477 to 671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 30/65(46%) 0/65(0%) Plus/Plus
Query        4  *ALVTSLTMLSARRGSVILTRSKSWFLV*SPPVQEIFSFMMRSITGLYVISLPFWRWSDPTCFLQ  198
                * LVT+   LS  R  VILT S  W  V* P V  IF  MMR  TG  VI   FW      C  Q
Subject    477  *VLVTNQVRLSVERALVILTHSGDWSHV*FPQVPGIFFCMMRFTTGQLVI*SIFWTLPSQACSWQ  671

Range 7: 732 to 830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 13/33(39%) 0/33(0%) Plus/Plus
Query      259  TSIEFLRVKCSLPRMVIGVKCIHNHCQVGICLR  357
                TSI+ +   CS  +M  G++C HN C    C R
Subject    732  TSIKSMATNCSSHQMATGMRCTHNLCHADTCSR  830

Potato latent virus, complete genome

Sequence ID: Length: 7890 Number of Matches: 3

Range 1: 489 to 842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 59/118(50%) 0/118(0%) Plus/Plus
Query        3  ISSSDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK  356
                + SS     +  +KG  D   L++LVP ++   A+NLFLHDE+HYW+ RDLITFLEV++P+ LL T V PPE+L G+ +SLN W Y YR+ + ++ F PDG   E Y QPLS  YLL+
Subject    489  VRSSASYPELCRRKGELDGAVLRELVPELMIKSAKNLFLHDELHYWTHRDLITFLEVLKPDKLLGTLVYPPELLKGAKKSLNSWCYTYRVDKDKLFFYPDGVHSEGYEQPLSGGYLLE  842

Range 2: 530 to 820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 43/97(44%) 0/97(0%) Minus/Minus
Query       44  SGCEYISHQLPSGAKSI*PSEILYW*AQGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTNFLSESESPIP  334
                +GC   S   PSG K+      LY * Q F+L   P   SGG T V  S+ G +TS+KV+RSR  Q*  SS + RFLA + I  GTN L+ + S  P
Subject    530  NGCS*PSEWTPSG*KNNLSLSTLYV*HQEFKLFFAPFSNSGG*TKVPNSLSGFSTSKKVIRSRWVQ**SSSCKNRFLALLIINSGTNSLNTAPSSSP  820

Range 3: 561 to 839 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 29/93(31%) 0/93(0%) Minus/Minus
Query       75  KQIPT*QWL*IHFTPITIRGKEHLTLRNSILVSPRI*AFRRANKDFRGYYSRCKKHVGSDHLQKGNEITYRPVMDLIMKEKISCTGGDYTRNQ  353
                +++   QWL + F    I  K+     +SI V+PR+  F R    FR      ++ V   +LQ+GN+I   P+M LI++E I        R+Q
Subject    561  EEVTATQWLLVAFRMDAIWIKKQFVFVHSICVAPRVQTFLRTL*QFRWVN*GAQQFVWLQYLQEGNQIPMGPIMKLIVQE*ILSAFNHQLRHQ  839

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 2

Range 1: 482 to 829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.9 bits(310) 0.0 59/116(51%) 0/116(0%) Plus/Plus
Query        9  SSDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK  356
                SS + +++ SKK + +  +LK+LVP V  +  RN FLHDE+HYWS +DL+ FL+ V P+ L+AT V PPEIL G+ ESLNPW Y +     ++ F PDG   E Y+QPLSS Y+LK
Subject    482  SSKQIDNLCSKKSLSECGTLKELVPLVKMSKKRNFFLHDELHYWSPQDLMLFLDSVNPDHLVATVVFPPEILAGAKESLNPWCYSFHRQGSKLTFFPDGVQSESYTQPLSSGYILK  829

Range 2: 547 to 723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 29/59(49%) 0/59(0%) Minus/Minus
Query       74  GFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTN  250
                GFRLS  P  ISGG T VA    GLT S+  +RS   Q*  SS +K+FL  + +T GT+
Subject    547  GFRLSLAPANISGGKTTVATK*SGLTESKNSIRSCGLQ**SSSCKKKFLFLLILTSGTS  723

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 3

Range 1: 484 to 828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 60/115(52%) 0/115(0%) Plus/Plus
Query       12  SDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK  356
                S +S  +++K G   S++L  LVP +IS  AR LF+HDE+HYWS  DL  FL+VV+P M+LAT V PPE+L GS  SLNPW Y++ I + ++LF PDG   E Y+QP+   YLLK
Subject    484  SKQSGGLLAKHGGFSSETLSTLVPSLISVKARKLFIHDELHYWSKNDLRCFLQVVKPEMVLATLVYPPELLAGSKISLNPWCYEFDIYKDRLLFYPDGVRSEGYNQPVGGGYLLK  828

Range 2: 549 to 725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 30/59(51%) 0/59(0%) Minus/Minus
Query       77  QGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGT  253
                QGF    EP R SGG T+VA ++ G TT RK  RS  DQ*  SS    FLA   I  GT
Subject    549  QGFNDIFEPARSSGGYTSVANTISGFTTCRKHRRSFFDQ*CNSSCINSFLAFTLIKLGT  725

Range 3: 592 to 822 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 28/77(36%) 0/77(0%) Minus/Minus
Query      120  QIPT*QWL*IHFTPITIRGKEHLTLRNSILVSPRI*AFRRANKDFRGYYSRCKKHVGSDHLQKGNEITYRPVMDLIM  350
                QIP    L I FTP T+R K+   L +  LV+PRI  + R   + R  + R + H+G  +L +  ++  RPV+  IM
Subject    592  QIPPTHRLVITFTPHTVRVKKQAILVDIKLVAPRIQ*YFRTG*ELRRVHQRGQYHLGFHNL*ETPKVILRPVV*FIM  822

Cowpea mild mottle virus, complete genome

Sequence ID: Length: 8127 Number of Matches: 2

Range 1: 548 to 838 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 54/97(56%) 0/97(0%) Plus/Plus
Query       63  SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLL  353
                +L+ LVP +    A++LFLHDE+HYW  +DLITFLEV+ P +LL T V PPE+LVG+  SLNPW Y + I +G++LF PDG   E Y QPL   YLL
Subject    548  TLRDLVPNISRVKAKHLFLHDELHYWREKDLITFLEVINPEVLLGTVVFPPELLVGAKRSLNPWCYHFEIEDGKLLFFPDGERSEGYEQPLRGGYLL  838

Range 2: 553 to 816 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 43/88(49%) 0/88(0%) Minus/Minus
Query       68  GCEYISHQLPSGAKSI*PSEILYW*AQGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTNFL  331
                GC Y S   PSG KS  PS I  W*  GF+L   PT  SGG T V     GL TS+ VMRS   Q*  SS R R LA   +  GT  L
Subject    553  GCSYPSDLSPSGKKSNLPSSISKW*HHGFKLRFAPTSNSGGNTTVPNKTSGLMTSKNVMRSFSLQ**SSSWRNRCLALTLLMFGTRSL  816

Nucleotide Sequence (348 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
348

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
219.1 898.0 20% 1.291e-56 62% NC_001948
121.5 176.2 40% 3.015e-27 46% NC_005343
118.3 182.2 39% 2.783e-26 48% NC_011525
119.2 219.0 34% 1.475e-26 32% NC_028975
119.7 169.3 40% 1.074e-26 44% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 458 to 760 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.1 bits(472) 0.0 92/101(91%) 0/101(0%) Plus/Plus
Query       14  FGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDGQL  316
                +G EFVISSSDKS+ VVS+KGIGDS+TLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKI+  QL
Subject    458  YGSEFVISSSDKSSQVVSRKGIGDSNTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQL  760

Range 2: 460 to 759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 88/100(88%) 0/100(0%) Minus/Minus
Query       16  NWPSLILY**AQGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSESPIPFXXXXXXXXXXXLITNSKP  315
                +W  LILY *AQGLRLSGEPTSTSGGITAVAKS+LG ATSKKL+RSLIDQ**ISSCRKRF APVEITRGTNLRSV ESP+PFLLTT LDLSLELITNS P
Subject    460  SWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPFLLTT*LDLSLELITNSDP  759

Range 3: 464 to 730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.7 bits(329) 0.0 57/89(64%) 0/89(0%) Minus/Minus
Query       20  GPRIEAFRRANQHLWRNYCSCQEHTWLCNIQKINEIAD*PVMNLIMQEKIPSTCGNYARNQSPECVRITNTLLADNMVRLVTRAYHKFQ  286
                GPR++   RANQH WR+YCSCQEH WL N+QKI++I +*PV+NLIMQ+KIP TCGNY  +QSPECVRITN L  DN+   VTR Y++ +
Subject    464  GPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQSPECVRITNALSTDNLT*FVTRTYNELR  730

Range 4: 477 to 767 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 60/97(62%) 0/97(0%) Plus/Plus
Query       33  *ALVTSLTMLSARRVLVILTHSGDWFRA*FPQVLGIFSCMMRFITGQSAISLIFWMLQSQVCSWQLQ*FLQRCWLALLKASILGPINIRSVMASYKS  323
                * LVT+   LS  R LVILTHSGDW   *FPQV GIF CMMRF TGQ  I  IFW L SQ CSWQLQ* LQ+CWLAL +   LGP +I+S+  +  S
Subject    477  *VLVTNQVRLSVERALVILTHSGDWSHV*FPQVPGIFFCMMRFTTGQLVI*SIFWTLPSQACSWQLQ*SLQKCWLALQRVLTLGPTSIKSMATNCSS  767

Range 5: 457 to 756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 63/100(63%) 0/100(0%) Plus/Plus
Query       13  VWFGICDKL**QV*PCCQQEGYW*F*HTPEIGSARNFHRCSESFPA**DSLLVNQRSH*FFGCCKAKYALGNCSNSSRGAGWLS*KPQSLGLSI*DQ*WP  312
                VW  +  K **Q+   CQ +G+W*F*HTPEIG   NFHRC ESF A**DSLLVN  S  FFG C+AK+ALGNCSN SR AGWLS +   LGL +*+Q  P
Subject    457  VWV*VRYKF**QIKSGCQ*KGHW*F*HTPEIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHALGNCSNPSRSAGWLSRES*PLGLPV*NQWQP  756

Range 6: 453 to 665 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 44/71(62%) 0/71(0%) Minus/Minus
Query        9  RAYLALQHPKN**DR*LTSNESHHAGKDSEHLWKLRAEPISGVCQNHQYPSC*QHG*TCH*SLSQIPNQTH  221
                RA LA Q PKN* D *LTS+ESHHA KDS HLWKL   PISGVC NHQ P  *Q    CH*+L +    T+
Subject    453  RACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPISGVC*NHQCPFY*QPDLICH*NL*RTQTHTY  665

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 2

Range 1: 457 to 759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.5 bits(259) 0.0 52/101(51%) 0/101(0%) Plus/Plus
Query       14  FGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDGQL  316
                +G EF    S +S  +++K G   S+TL  LVP +IS  AR LF+HDE+HYWS +DL  FL V KP M+LAT V PPE+L GS  SLNPW Y++ I   +L
Subject    457  YGSEFTCVRSKQSGGLLAKHGGFSSETLSTLVPSLISVKARKLFIHDELHYWSKNDLRCFLQVVKPEMVLATLVYPPELLAGSKISLNPWCYEFDIYKDRL  759

Range 2: 531 to 725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 30/65(46%) 0/65(0%) Minus/Minus
Query       88  QGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVS  282
                QG     EP  +SGG T+VA +I GF T +K  RS  DQ*  SSC   F A   I  GT +  VS
Subject    531  QGFNDIFEPARSSGGYTSVANTISGFTTCRKHRRSFFDQ*CNSSCINSFLAFTLIKLGTRVERVS  725

Potato latent virus, complete genome

Sequence ID: Length: 7890 Number of Matches: 2

Range 1: 471 to 773 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.3 bits(252) 0.0 48/101(48%) 0/101(0%) Plus/Plus
Query       14  FGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDGQL  316
                +G  FV+ SS     +  +KG  D   LR LVP ++   A+NLFLHDE+HYW+  DLI FL+V KP  LL T V PPE+L G+ +SLN W Y Y++   +L
Subject    471  YGSNFVVRSSASYPELCRRKGELDGAVLRELVPELMIKSAKNLFLHDELHYWTHRDLITFLEVLKPDKLLGTLVYPPELLKGAKKSLNSWCYTYRVDKDKL  773

Range 2: 530 to 754 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 36/75(48%) 0/75(0%) Minus/Minus
Query       73  LY**AQGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSESPIP  297
                LY * Q  +L   P S SGG T V  S+ GF+TSKK++RS   Q** SSC+ RF A + I  GTN  + + S  P
Subject    530  LYV*HQEFKLFFAPFSNSGG*TKVPNSLSGFSTSKKVIRSRWVQ**SSSCKNRFLALLIINSGTNSLNTAPSSSP  754

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 3

Range 1: 452 to 742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.2 bits(254) 0.0 48/97(49%) 0/97(0%) Plus/Plus
Query        8  YVFGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYK  298
                Y +G +F   SS + N++ S++ +    TLR LVP V  +  RN FLHDE+HYWS  DL+ FLD   P  LLAT V PPE+L G+ ESLNPW Y ++
Subject    452  YRYGSDFTTLSSKQINNLCSRQSLEQCGTLRELVPLVKMSKKRNFFLHDELHYWSPHDLMLFLDSTTPDHLLATVVFPPEILAGAKESLNPWCYSFQ  742

Range 2: 535 to 723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 30/63(48%) 0/63(0%) Minus/Minus
Query       91  GLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSV  279
                G +LS  P S SGG T VA+   G   S+K +RS   Q*  SSCRK+F   +  T+GTN  SV
Subject    535  GFKLSLAPASISGGKTTVARR*SGVVESRKSIRSCGLQ*CSSSCRKKFLFLLIFTKGTNSLSV  723

Range 3: 491 to 727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 25/79(32%) 0/79(0%) Minus/Minus
Query       47  PRIEAFRRANQHLWRNYCSCQEHTWLCNIQKINEIAD*PVMNLIMQEKIPSTCGNYARNQSPECVRITNTLLADNMVRL  283
                P I A    +++LW      +E    C I+K ++I   P++ L+MQE++P     Y R+Q P C  +  TL    +V L
Subject    491  PWI*ALLSPSEYLWWENNGSKEMIRCC*IKKKHKIMWAPIVQLVMQEEVPFFAHLY*RHQLP*CATLLKTLSGTEIVYL  727

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 2

Range 1: 452 to 739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 47/96(49%) 0/96(0%) Plus/Plus
Query        8  YVFGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQY  295
                Y +G +F   SS + +++ SKK + +  TL+ LVP V  +  RN FLHDE+HYWS  DL+ FLD   P  L+AT V PPE+L G+ ESLNPW Y +
Subject    452  YRYGSDFTTLSSKQIDNLCSKKSLSECGTLKELVPLVKMSKKRNFFLHDELHYWSPQDLMLFLDSVNPDHLVATVVFPPEILAGAKESLNPWCYSF  739

Range 2: 526 to 723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 29/66(44%) 0/66(0%) Minus/Minus
Query       82  GLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSES  279
                G RLS  P + SGG T VA    G   SK  +RS   Q** SSC+K+F   + +T GT+  +V  S
Subject    526  GFRLSLAPANISGGKTTVATK*SGLTESKNSIRSCGLQ**SSSCKKKFLFLLILTSGTSSFNVPHS  723

Nucleotide Sequence (739 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
74
148
222
296
370
444
518
592
666
739

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
502.8 1561.4 32% 1.447e-141 40% NC_001948
138.5 417.4 53% 3.206e-54 38% NC_009892
119.3 311.4 37% 1.174e-45 37% NC_018714
88.1 302.3 23% 1.082e-47 38% NC_030926
91.8 221.8 27% 2.196e-45 32% NC_018175

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 6374 to 7111 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
502.8 bits(1091) 0.0 208/246(85%) 0/246(0%) Minus/Plus
Query        2  CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHDVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQNISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKL  739
                CIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+FIAFTAGVPD+PNL+GRYIKPYSPGCAV GK+NILDEYLSV DFS FDVLFSDPYQNIS+P+ A F+KSK+CRFG N C +L SFGF V SD  D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKL
Subject   6374  CIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKL  7111

Range 2: 6685 to 7110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(455) 0.0 96/142(68%) 0/142(0%) Plus/Minus
Query        3  SLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSNLSLCTSKPKDRRN*HPLLPNLQDFDFMKRATLGTLIF*YGSENSTSKSEKSFTDRYSSSMFIFPFTAQPGEYGLMYLPERFGVSGTPAVKAMKLSSSVMSSLIK  428
                +L SELCA A+STASLPK ISTPSTS+  G+P +T S  SL T KPK+ R      PNLQ FD MK A+LG L+F YGSENSTSK EKS+TD+YSSS+  FP TA PGE GLMYLP R G+SGTPAVKAMK SSS +SSLIK
Subject   6685  NLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK  7110

Range 3: 6376 to 6603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 59/76(78%) 0/76(0%) Plus/Minus
Query      510  DKALTKLFIIITSCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSM  737
                D ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS  A*+TSIA*LS+
Subject   6376  DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSI  6603

Range 4: 6377 to 7108 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.3 bits(540) 0.0 120/244(49%) 0/244(0%) Plus/Minus
Query        5  FEI*IMRSSQINCLLAKAN*HTLNIQLKWRTCNHFIKPVTMHIKTKG*KELTSIITKPARL*LHEESHPWNTDILIWVRE*HVKIRKVIHRQILIKYVYLPFYSAARRVWLDVPPREIWSVGNAGRKSYETLVFSDELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHIMPNT*GLIYSFKQPRN*APHLVLISNQEPHTIVVCFNFLFIHHLN*QLAQPVGIGHLNCIIIN  736
                FE  ++R+S+I+CLL KA *H  NI  K R  N F++ VT ++KT+G K   SI  KP   *L E     N D+L+WVRE H+K  K++  Q+LIKY+  P++    R+ L+VP  EI +V N   +SYE L+  + L Y TTFTTTR+ MN+ WK +H  NT+KLK  Q FN*+IHN  IMPNT*GLI SFK   N*A HL+L+ +QE +TI++  +F   HH N  L+Q V IG L  II+N
Subject   6377  FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVN  7108

Range 5: 6378 to 6941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 97/188(52%) 0/188(0%) Plus/Minus
Query      172  QTCKTLTS*REPPLEH*YFDMGQRIARQNQKSHSQTDTHQVCLSSLLQRSQESMA*CTSQRDLECRERRP*KL*NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*PGTAHNCSVLQLPLHSSSQLTTRPACRHRTPQLHNYQ  735
                QT K LT *  P  E * F MG R A QN K+  +T THQV   SL   + E+ A*CT   D  C E   *KL*NS  +  A L NYFYHYQ  YE  LEI*A  KH QTQ  T L*L+YS* S++AK+LRPN *LQ   KLS SS A  *P   HN +   L   SS Q    P   HR P  HN Q
Subject   6378  QTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQ  6941

Range 6: 7035 to 7091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 12/19(63%) 0/19(0%) Plus/Minus
Query       22  AQQPNQLPPCQSKLAHPQH  78
                AQQ + LPP QS LA  QH
Subject   7035  AQQRDPLPPYQSILAPLQH  7091

Range 7: 6385 to 6624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 41/80(51%) 0/80(0%) Minus/Plus
Query      489  LCN*GVLCLQAGRVVN*DDE*RGS*STLQLCAVPG*K*AQDEVLNFWVV*SYRLGLKCLA*CDYYE*LS*SFVYV*VCGC  728
                LC+ G+LC+  GR  +*+D+   S   L LC + G + A DE+LNF  +*SY LGLK LA  +YYE* S*S V +*VC C
Subject   6385  LCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRC  6624

Range 8: 6676 to 6981 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 46/102(45%) 0/102(0%) Minus/Plus
Query      132  *K*FDKRAHH*RREFHSFYGRRSRHSKSLWEVHQAILSWLRCKREDKHT**VSVCE*LF*F*RAIL*PISKYQCSKGGSLHEVKVLQVW**WMLVPSILWF*  437
                *K*F+K A+    EFHSF+ R SR   S  +VH A+ S +   RE  +T**V V    F F* A+L PI K+Q S  G+ H+VK L VW  ++ +  +L F*
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF*  6981

Range 9: 7036 to 7092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/19(63%) 0/19(0%) Minus/Plus
Query       21  C*GCANLLWQGGS*FGCCA  77
                C*  AN+LW GGS   CCA
Subject   7036  C*RGANMLW*GGSGSRCCA  7092

Range 10: 6708 to 7055 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 46/116(40%) 0/116(0%) Minus/Plus
Query       58  KTRVS*LLRPAFPTLQISLGGTSSHTLLAAL*KGR*TYLMSICL*MTFLILTCYSLTHIKISVFQGWLSS*SQSLAGLVIMDVSSFYPLVLMCIVTGLMK*LQVLHLSWMLRVC*F  405
                + R+S*L +  F T  IS  GT S  L     +G+  YLMS C    F +L C S TH K S F     S SQ L GL  +  + F P VL   VT   K L    L  ML+ C*+
Subject   6708  RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*Y  7055

Range 11: 6378 to 6572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 34/65(52%) 0/65(0%) Minus/Plus
Query      541  LIIMQLRCPMPTGWASCQLR**MKRKLKHTTIVCGSWLEISTR*GAQFLGCLKL*IRP*VFGMM*  735
                L IM+ R PM T W S  L+** ++K +   IV  SW   S R* AQF   LKL IRP*VFG++*
Subject   6378  LTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*  6572

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 6

Range 1: 6482 to 7024 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 69/181(38%) 0/181(0%) Minus/Plus
Query        2  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQNISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKL  544
                V +M+ +V  L  + F      +   ++VH+VPGSGK++LIRE +  +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS    + FD  FSDP+QN      A F+   S RFG N    L S G+ V+S + DE+I  + F  ++EG +IC  K   D    ++ +++L
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRL  7024

Range 2: 6272 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 34/56(61%) 0/56(0%) Minus/Plus
Query      572  CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI  739
                CIDNYAIEVSYAY +GE   + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I
Subject   6272  CIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 3: 6272 to 6430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 25/53(47%) 0/53(0%) Plus/Minus
Query      581  KQPRN*APHLVLISNQEPHTIVVCFNFLFIHHLN*QLAQPVGIGHLNCIIINA  739
                K+ RN     V + N EPHT+VVC +F F   L   L   V I +LNCII+NA
Subject   6272  KEIRNRTF*KVGVLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNA  6430

Range 4: 6598 to 6801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 26/68(38%) 0/68(0%) Plus/Minus
Query      225  F*YGSENSTSKSEKSFTDRYSSSMFIFPFTAQPGEYGLMYLPERFGVSGTPAVKAMKLSSSVMSSLIK  428
                F* GSE   S    +  +RYSSSM   P    P     M  P+ FG SG+P  KA      + +SLI+
Subject   6598  F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR  6801

Range 5: 6273 to 6380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/36(53%) 0/36(0%) Plus/Minus
Query      631  TAHNCSVLQLPLHSSSQLTTRPACRHRTPQLHNYQC  738
                T+H+CSV    LHSS+   T P  +H  PQLHN QC
Subject   6273  TSHSCSVHPFLLHSSTWKVTPPWSKHMKPQLHNCQC  6380

Range 6: 6274 to 6420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 28/49(57%) 0/49(0%) Plus/Minus
Query      591  EIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSM  737
                E EH      LT N TQL*CAS SSS      +SP  *A +TSIA*LSM
Subject   6274  ETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSM  6420

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 5

Range 1: 6673 to 7134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 60/154(39%) 0/154(0%) Minus/Plus
Query       80  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQNISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFEL  541
                +IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS    + F+ LFSDPYQN      A F+   S RFGN     L   G+++ S + D V   + F+L
Subject   6673  LIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL  7134

Range 2: 6424 to 6582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 29/53(55%) 0/53(0%) Minus/Plus
Query      581  CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  739
                CIDNYAIEVS AY++GE     ++ +EV+AHYNCVRF+V++ H ++ +I  LF
Subject   6424  CIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF  6582

Range 3: 7135 to 7215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 10/27(37%) 0/27(0%) Minus/Plus
Query        2  LDVEGVLICFGKEAVDLAAAHNSDFKL  82
                +D EGV+IC  +   D    H+ ++KL
Subject   7135  VDPEGVIICLEESVEDFLKWHSVEYKL  7215

Range 4: 6816 to 7109 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 38/98(39%) 0/98(0%) Plus/Minus
Query      105  TSSNLSLCTSKPKDRRN*HPLLPNLQDFDFMKRATLGTLIF*YGSENSTSKSEKSFTDRYSSSMFIFPFTAQPGEYGLMYLPERFGVSGTPAVKAMKL  398
                T S L L    P   R+*   LP   +   MK A   +  F*YGSE    K  +   DRYSS +  FP    P    LM +P  F  SGTP V A  L
Subject   6816  TMSCLLLAMLYPNP*RS*TV*LPKRCEHLPMKWALKQSP*F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML  7109

Range 5: 6426 to 6548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 25/41(61%) 0/41(0%) Plus/Minus
Query      615  LFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSM  737
                L  T  RTQL*CASTS         SP L*A +TSIA*LSM
Subject   6426  LCCTMKRTQL*CASTS*GDRYKFKFSPIL*AQETSIA*LSM  6548

Jasmine virus C isolate A-31, complete genome

Sequence ID: Length: 8506 Number of Matches: 5

Range 1: 5796 to 5957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 31/54(57%) 0/54(0%) Minus/Plus
Query      578  CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  739
                CIDNYAIEV++AYR+GE ++  M+EEE++A YNCVR ++RNKH ++ S+   FE
Subject   5796  CIDNYAIEVAFAYRMGERAVNRMDEEELDAFYNCVRLIIRNKHLLKSSVRDTFE  5957

Range 2: 6003 to 6311 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 41/103(40%) 0/103(0%) Minus/Plus
Query      227  MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQ  535
                M  L+  L +F F  V S LR P++VH VPG+GKSSLIR ++ +     A+T G  D PNL G YI+P++    +  +  I +  LS         LF DP Q
Subject   6003  MELLLNKLESFGFTRVSSALRLPLIVHCVPGAGKSSLIRAILEDSVELRAYTFGQADQPNLIGNYIRPFTSDSILDQRTIIDEYTLSPQPIHGVLALFGDPRQ  6311

Range 3: 6333 to 6533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 26/67(39%) 0/67(0%) Minus/Plus
Query        8  VALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  208
                VA F+ + S RFG N   FL   GF+VH++  D V     F+ +  GV++CF  E   L  AHN ++
Subject   6333  VANFLGNFSRRFGANTAIFLRKLGFNVHAEGEDTVRVLDIFKAEPSGVIVCFEPEVQKLLCAHNLEY  6533

Range 4: 5798 to 5923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 26/42(62%) 0/42(0%) Plus/Minus
Query      612  CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSM  737
                CLFL  N TQL* AS+SSS +     SP L*A  TSIA*LS+
Subject   5798  CLFLIINLTQL*KASSSSSSMRFTALSPIL*AKATSIA*LSI  5923

Range 5: 6362 to 6529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 21/56(38%) 0/56(0%) Plus/Minus
Query       12  SELCAAAKSTASLPKQISTPSTSNSNGEPVITSSNLSLCTSKPKDRRN*HPLLPNL  179
                S L A +    S  KQ  TP  S  N     T S+ S CT  P  RR      PNL
Subject   6362  SRLWAQSNFCTSGSKQTITPDGSALNISSTRTVSSPSACTLNPNFRRKIAVFAPNL  6529

Potato virus H isolate YN, complete genome

Sequence ID: Length: 8410 Number of Matches: 3

Range 1: 5949 to 6161 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 37/71(52%) 0/71(0%) Minus/Plus
Query      329  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPY  541
                ++M+ LV  L+ + F  ++S L  P+VVH VPG+GK+SLIRELI  D  F+A+TAGV D P+LSGR+I+ +
Subject   5949  LLMDVLVDLLNKYSFTRIHSKLSSPIVVHCVPGAGKTSLIRELIKLDSRFVAYTAGVEDEPHLSGRWIRKF  6161

Range 2: 5744 to 5908 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 31/55(56%) 0/55(0%) Minus/Plus
Query      575  CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA  739
                CIDNYAIEV++AY+LGE ++  M+EEE+EA YNCVR +V+NKH  R ++  +F +
Subject   5744  CIDNYAIEVAFAYKLGERAVNRMDEEELEAFYNCVRIIVKNKHHCRSNVVEVFSS  5908

Range 3: 6267 to 6488 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 24/74(32%) 0/74(0%) Minus/Plus
Query        5  NISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFK  226
                N  V R A +  ++S RFG +   FL   GFDV ++  DEV   + +++D    ++ F +E   L  AH+ + K
Subject   6267  NTKVVRSADYTCNRSKRFGRSTALFLRELGFDVVAEADDEVAVANIYQVDPVEQVVYFEQEVGCLLRAHHVECK  6488

Nucleotide Sequence (756 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
76
152
228
304
380
456
532
608
684
756

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
515.6 1565.4 25% 2.058e-145 42% NC_001948
100.5 174.0 23% 1.444e-36 41% NC_003462
101.4 245.3 25% 1.977e-36 38% NC_014821
101.9 246.2 22% 1.977e-36 39% NC_018714
90.4 253.5 21% 3.709e-36 41% NC_009892

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 13

Range 1: 2957 to 3685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
515.6 bits(1119) 0.0 208/243(86%) 0/243(0%) Plus/Plus
Query       27  GTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFNIKKIEDSSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS  755
                G GLS+VL MPRSKKQSILVLEGALS+ETDYGPK+LGSFEVFKGDF+IKK+E+ SIFVI+Y+AP+RSTG+LRVH S CSFSGS+E+LL CQIEA AD++I+DFNTF VPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESE  V P LS+P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS
Subject   2957  GPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS  3685

Range 2: 3265 to 3684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 103/140(74%) 0/140(0%) Minus/Minus
Query      335  LGLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHRIPHRGHSFSPNFQLTSYSGVIMISLT*CLTQNKXXXXXXXXXXSPSCFRIVGLERAGSTGDSLSTNDLIPAFKARPSVLRRKPTECQKQLPSPGTGKVL  754
                LGLH+* +TSTSRLPSA+A+AVIMQP  GA G K* D + RIPHRGHS SPNFQLTSYSGVI I LT C  QN AIISFSA*AFS +C  I G ER+G T  SLST D IPAF+A PSVL +KPTECQKQLPSPGT KVL
Subject   3265  LGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVL  3684

Range 3: 2956 to 3219 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 64/88(73%) 0/88(0%) Minus/Minus
Query       26  NNSSLDPENEHADL*TLSLPVDLTGAL*DITNMELSSIFLMLKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGMARTCDRPVP  289
                +N+SLDPENEH++L*TL+LPVDL GAL  IT +E SSIFLM KSPLKTS DP+ FGP*SVS +RAPSRT+IDCFLL G+++T DRP P
Subject   2956  SNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGP  3219

Range 4: 3227 to 3289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 13/21(62%) 0/21(0%) Minus/Minus
Query      297  ITRHRKSVEVFNFKVS*CLNL  359
                ITRHR+SV++ N  +S CLNL
Subject   3227  ITRHRESVKIINIIISTCLNL  3289

Range 5: 2994 to 3470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 69/159(43%) 0/159(0%) Minus/Minus
Query       64  RIRQSFHFLHKRFHQVASV*LGLKELDQLVIHFPQTILFLPSKLDHLC*EESQLSAKSSYHHQAQEKC*SLQFQSQLMPQFDSPITAPLTQKMSMQICELLACLWI*LEPCKISQIWSYLLSF*C*NPP*KLQMIPRFLDRSQFLKKGPLQEQGLTVSC  540
                RI +S H  HK    +    LGLK+LD    H P+ I + P    H C* ++Q +AKS+ HHQAQ KC*+ Q+ +Q MPQ  S       +KMS+  CE   C WI*L PC + Q  +   S *C +P *KLQ  P  LD + FL  G LQE  L   C
Subject   2994  RIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQEPKLIAFC  3470

Range 6: 3531 to 3686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 26/52(50%) 0/52(0%) Minus/Minus
Query      601  CWAYISN*ARLPHAFQVLMQ*L*SCSH*EGHKVENDWTLNTEFHIEAIHSPQ  756
                CW Y  N     HAFQVL Q L*SC+H  G  V +D     EFHI A H P+
Subject   3531  CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPR  3686

Range 7: 3359 to 3685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 47/109(43%) 0/109(0%) Minus/Minus
Query      429  AGPT*VIEHVYLTPSKC*CNSCNHAAIKRGTRLKMIGL*TQNST*RPFILPKLPAHFIFWRYNDQSHMMPNTE*GNHFIFCISVFTKLLPYSWA*KSWINW*FTFHKRS  755
                AG T +I H+  TPSKC* N C+HA I+ G  L++I    +NST* P   P+ P +FIFW  + + +++PN E* +H I  IS+  +L    W *K W     T H+RS
Subject   3359  AGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERS  3685

Range 8: 2972 to 3196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 37/75(49%) 0/75(0%) Minus/Minus
Query       42  K*ACRFVNS*LACGSDWSPVRYHKYGAIFYLFNVKIPLKNFK*SQDFWTVVSF*RKGPFKNKD*LFLASWHGQNL  266
                K*A   VN   A GS+W  VRY+K     +L NVK+P +NFK  QDFWT++ F   G FKN++*L  A  H  NL
Subject   2972  K*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFYG*GTFKNQN*LLFAPRHF*NL  3196

Range 9: 3439 to 3684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 39/82(48%) 0/82(0%) Plus/Plus
Query      509  LCRK*NDCLILC*ASCETDHYNARI*SELEVWGE*MASMWNSVFKVQSFSTLCPS*WLHDYSYCISTWKA*GRRAQLLM*AQ  754
                LCR+*+D +IL  A  +    + RI*S LE+ G *+A MWNS+  ++S  T+ P+ WLHD+S+C STWKA*    +L +* Q
Subject   3439  LCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQ  3684

Range 10: 2983 to 3282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 43/100(43%) 0/100(0%) Plus/Plus
Query       53  HAKKQETVNPCS*RGPFFRN*LRSKNLGII*SF*GGF*H*KDRR*LHICDILQGSSQIHRQAKSSQICMLIFWVKGAVIGLSN*GIS*L*N*RLQHFSCA  352
                +A +Q+ +N  S*R P  RN L SK+ G+ *SF  G  H*+D    + C+ +QG + IH Q + SQ  MLIF ++  +  L +*G+ *L* *   HF CA
Subject   2983  NASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLCA  3282

Range 11: 2973 to 3197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 35/75(47%) 0/75(0%) Plus/Plus
Query       43  KFWPCQEARNSQSLFLKGPFL*KLTTVQKSWDHLKFLRGILTLKR*KIAPYL*YLTGLQSDPQAS*EFTNLHAHF  267
                +F  C  A+++Q  FLK P+ *K   VQKSW  LKF +G  TL+R +   +L*  T  Q DP A * FT  +AHF
Subject   2973  RF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHF  3197

Range 12: 3285 to 3479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 27/65(42%) 0/65(0%) Plus/Plus
Query      355  VMVTAFGTQLAFFLAQMV*L*RQE*DRLWKVNHQLIQLFQAQLYGSNLVKTLMQKMK*LPYSVLG  549
                VM  AFG  L F+LA M   *R   D  W+V+   +Q+FQ Q + +N  + LM +M+*  YS  G
Subject   3285  VMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFG  3479

Range 13: 3507 to 3599 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 14/31(45%) 0/31(0%) Plus/Plus
Query      577  QNMK*AGSLGRMNGLYVEFCV*SPIIFNLVP  669
                QNMK  G+ G+++G YVEF   + I  N  P
Subject   3507  QNMKLVGNSGKVSGPYVEFFALNQITSNHAP  3599

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 2

Range 1: 3459 to 3737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 42/93(45%) 0/93(0%) Plus/Plus
Query      477  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS  755
                P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AI+SAL RREVDVL  L +P+
Subject   3459  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPA  3737

Range 2: 3228 to 3470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 33/81(41%) 0/81(0%) Plus/Plus
Query      231  GKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALS  473
                G+LR H+  C  S   E L  C +  S  FE + F++F V  DGNCFWHSVG L+  DG  LK  +    + +    P LS
Subject   3228  GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLS  3470

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 3463 to 3741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 42/93(45%) 0/93(0%) Plus/Plus
Query      477  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS  755
                P + KQL  N +AE E +A FC  + ++L ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L +P+
Subject   3463  PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPA  3741

Range 2: 3232 to 3474 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 31/81(38%) 0/81(0%) Plus/Plus
Query      231  GKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALS  473
                G+LR H+  C  S   E L  C +  S  FE + +++F V  DGNCFWHSVG L+  DG  +K  +    + +    P LS
Subject   3232  GELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLS  3474

Range 3: 3342 to 3419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 16/26(62%) 0/26(0%) Minus/Minus
Query      341  FKARPSVLRRKPTECQKQLPSPGTGK  418
                F   PS   R PTECQKQLPS  T K
Subject   3342  FMHSPSTPIRGPTECQKQLPSASTSK  3419

Range 4: 3570 to 3737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 21/56(38%) 0/56(0%) Minus/Minus
Query      584  GLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHRIPHRGHSFSPNFQLTS  751
                GL +   TSTS    A+A+A++ QP  G QG K*L  + ++     S   N Q+ S
Subject   3570  GLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS  3737

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 4

Range 1: 3460 to 3738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 43/93(46%) 0/93(0%) Plus/Plus
Query      477  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS  755
                P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L +P+
Subject   3460  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPA  3738

Range 2: 3229 to 3417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 30/63(48%) 0/63(0%) Plus/Plus
Query      231  GKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALK  419
                G+LR H+  C  S   E L  C +  S  FE + F++F V  DGNCFWHSVG L+  DG  LK
Subject   3229  GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK  3417

Range 3: 3339 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 16/26(62%) 0/26(0%) Minus/Minus
Query      341  FKARPSVLRRKPTECQKQLPSPGTGK  418
                FK  PS     PTECQKQLPS  T K
Subject   3339  FKYSPSTPINGPTECQKQLPSASTSK  3416

Range 4: 3567 to 3734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 22/56(39%) 0/56(0%) Minus/Minus
Query      584  GLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHRIPHRGHSFSPNFQLTS  751
                GL     TSTS   SA+AIA++  PL G QG K L ++  +     S   N Q+ S
Subject   3567  GLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS  3734

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 3326 to 3589 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 36/88(41%) 0/88(0%) Plus/Plus
Query      489  KQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRP  752
                +Q+  + +AE E +A FC  + ++L +++    V+W F   +      L  + NHF PC P+NGC++ AIASALGRRE+DVL  L +P
Subject   3326  RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKP  3589

Range 2: 3086 to 3283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 31/66(47%) 0/66(0%) Plus/Plus
Query      234  KLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIR  431
                +LR H   C  S   E L  C +  S  F  ++F+ F VPGDGNCFWHSVG L+  DG+ LK  +R
Subject   3086  QLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLKGILR  3283

Range 3: 3466 to 3588 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 22/41(54%) 0/41(0%) Minus/Minus
Query      629  GLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHRI  751
                GL K   TS S LP ADAIA+  QPL G  G K*L +  R+
Subject   3466  GLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV  3588

Range 4: 3193 to 3270 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 16/26(62%) 0/26(0%) Minus/Minus
Query      341  FKARPSVLRRKPTECQKQLPSPGTGK  418
                F   PS     PTECQKQ PSPGT K
Subject   3193  FNKIPSTPISGPTECQKQFPSPGTSK  3270

Nucleotide Sequence (303 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
31
62
93
124
155
186
217
248
279
303

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
214.6 605.6 20% 2.267e-55 38% NC_001948
58.3 58.3 27% 2.462e-08 30% NC_018714
55.1 55.1 27% 2.274e-07 27% NC_009892
56.1 56.1 16% 1.205e-07 45% NC_028868
52.8 52.8 16% 1.113e-06 41% NC_028975

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 1193 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.6 bits(462) 0.0 86/100(86%) 0/100(0%) Minus/Plus
Query        3  GSLLMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSISLIDITPDFFEHLFLFSCLNELIEDNVEEVMDNSWFGLSNAQFDRQRCPF  302
                GSLLMPNI KLVISFFCRMMPNALARLSS+FRE SLDSFVY+LEPFNFS++L+DITPDFFEHLFLFSCLNELIE++VEEVMDNSWFGL + QF+RQR PF
Subject   1193  GSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPF  1492

Range 2: 1192 to 1494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 67/101(66%) 0/101(0%) Plus/Minus
Query        1  EKGHL*RSNCALLSPNHEXXXXXXXXXXXXXXRQENRKRCSKKSGVMSMRLIEKLKGSSAYTNESKEDSRKFDESLARAFGIILQKKEMTSFGIFGISREP  303
                + G L R NC   SPN ELS+TSST SSINS RQE R +CSKKSGV+S +L EKLKGSS YTNES E SRK +ESLA AFGII QK +MT+  + GIS+EP
Subject   1192  KNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKEP  1494

Range 3: 1193 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 42/100(42%) 0/100(0%) Plus/Minus
Query        3  EGTPLTIKLCIA*PKPRVVHNFLNIILDQFIETREQEKVLKEVRSNVYEAY*EVERFKCIHK*VQRGLTKI**KPSQSIWHHSTKERDDQLWNIWH*QGA  302
                E  PL I+L +   KPR+VH+  N++LDQ I   E++ +LKE+RS ++    +++  K +HK*+ R L+K   +P + IWHH  KE  DQL N+ H Q A
Subject   1193  ERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRA  1492

Range 4: 1201 to 1494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 37/98(38%) 0/98(0%) Minus/Plus
Query        1  ANAKYSKAGHLFLL*NDAKCSG*AFIKFS*VLFGLICVCT*TFQLLNKPHRHYS*LL*APFPVLLSQ*IDRG*C*GSYGQLVVWAKQCTV*SSKVSLL  294
                A A++   GH+ LL +DAKC+  A    S V    ICV T*          + S* L*A   +LL +*+DRG  *  +GQ +VW    T+ S +  +L
Subject   1201  AYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVL  1494

Range 5: 1194 to 1319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 20/42(48%) 0/42(0%) Minus/Plus
Query      176  APC*CQIFQSWSSLSFVE*CQMLWLGFHQIFVSPLWTHLCMH  301
                A C C  F SWS  SF  *CQM   G    F S    HLC H
Subject   1194  ALCLCPTFLSWSYHSFAG*CQMHSPGSLLAFESVR*IHLCTH  1319

Range 6: 1359 to 1451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 16/31(52%) 0/31(0%) Plus/Minus
Query       44  QTTSCP*LPQHYPRSIH*DKRTGKGAQRSQE  136
                QT +CP*  Q  PRS H  +R    AQR+QE
Subject   1359  QTKNCP*PLQRPPRSTHLGRRREINAQRNQE  1451

Range 7: 1224 to 1337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 17/38(45%) 0/38(0%) Plus/Minus
Query      158  RS*KVQVHTQMSPKRTHENLMKA*PEHLASFYKRKR*P  271
                ++*+ QV TQM+   T E+  +A   HLAS  KR  *P
Subject   1224  KN*RAQVSTQMNLANTLES*KRAWRVHLASSGKRMI*P  1337

Range 8: 1401 to 1484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 11/28(39%) 0/28(0%) Minus/Plus
Query       11  MN*SRIMLRKLWTTRGLG*AMHSLIVKG  94
                M+*SR  L++ WT  GL    ++ I +G
Subject   1401  MS*SRRTLKRSWTILGLDLGTYNSIARG  1484

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 1204 to 1449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 25/82(30%) 0/82(0%) Minus/Plus
Query       48  LMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSISLIDITPDFFEHLFLFSCLNELIEDNVEEVMDNSW  293
                ++P++ ++V  FF ++ PN ++R     ++  LD+F+  LE FNFSI+  D++ ++ + L   +     I+ NVEE   ++W
Subject   1204  MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW  1449

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 1208 to 1453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 22/82(27%) 0/82(0%) Minus/Plus
Query       48  LMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSISLIDITPDFFEHLFLFSCLNELIEDNVEEVMDNSW  293
                L+PN+ KL+ +FF  + P+++AR    F++ SLD+F+  +E FNFS+    I+  + + +       ++   +++ +    W
Subject   1208  LLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW  1453

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 1

Range 1: 1193 to 1339 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 22/49(45%) 0/49(0%) Minus/Plus
Query      153  SLLMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSI  299
                SLLMP+  KL+ + F   +P  +AR    ++ SSLD F++ LEPF+FS+
Subject   1193  SLLMPDTAKLIGALFASFLPFKMARFFDCYKSSSLDKFIHDLEPFSFSV  1339

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 1

Range 1: 1193 to 1339 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 20/49(41%) 0/49(0%) Minus/Plus
Query      153  SLLMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSI  299
                S+LMP   KL+ + F  ++P  +AR    ++  SLD F++ LEPF+FS+
Subject   1193  SMLMPETAKLIGALFASLLPFKMARFFECYKACSLDKFIHDLEPFSFSV  1339

Nucleotide Sequence (408 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
41
82
123
164
205
246
287
328
369
408

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
291.1 1335.4 28% 3.433e-78 63% NC_001948
135.8 230.3 26% 1.975e-31 46% NC_009892
135.3 213.8 27% 2.713e-31 47% NC_025388
133.9 212.9 27% 7.034e-31 47% NC_028975
130.3 188.2 19% 8.927e-30 47% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 8182 to 8556 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.1 bits(629) 0.0 121/125(97%) 0/125(0%) Plus/Plus
Query       12  GIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALINNPFANVTHE*G*  386
                GIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGG+KRAPTKAEMVANIASFEV+VLRQ MAEGKRSSNLGEISGGTAGALINNPF+NVTHE*G*
Subject   8182  GIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQVLRQAMAEGKRSSNLGEISGGTAGALINNPFSNVTHE*G*  8556

Range 2: 8181 to 8552 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 113/124(91%) 0/124(0%) Minus/Minus
Query       11  PYSCVTFAKGLLISAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLIIP  382
                P+SCVTF KGLL+SAPAVPPLISPRLELR PSAI CLST TSKEAILATISAFVGALL PP GSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVS+WMFHTIFA*YMQNLR+VVTSLIIP
Subject   8181  PHSCVTFEKGLLMSAPAVPPLISPRLELRLPSAIACLST*TSKEAILATISAFVGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIP  8552

Range 3: 8185 to 8565 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.9 bits(478) 0.0 88/127(69%) 0/127(0%) Minus/Minus
Query       15  LPLSALFVRDVCKGVVDKRPSRSTTNFSKIGAPLSFSHSLSEHFDFKRGNISDHLCFCWSSLDTTLRFKRALICDSKEEVKGCKLFILIKSFLGPISWWYSRLQMDVPHNFRVVHAKSAQCGHLSYN  395
                L  S+ F+ ++ KGVVD+  SRSTTN SK+G PL+FSHSLSEH + KRG+IS+HL F WSS ++TL FKR LICDS+E++KGCKLFILIKSFLGP+SWWY RLQMDVPH+F +VHAKS  CGHL YN
Subject   8185  LTSSSSFMCNI*KGVVDECTSRSTTNLSKVGTPLAFSHSLSEHLNLKRGDISNHLSFRWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYN  8565

Range 4: 8180 to 8569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.8 bits(432) 0.0 89/130(68%) 0/130(0%) Plus/Plus
Query       10  LEL*ER*PHCADFACTTRKLCGTSIWRREYHQLIGPRKDLMRMKSLQPLTSSLESQMRARLNLRVVSRELQQKQRWSLILPLLKSKCSDRLWLKESGAPILEKLVVERLGRLSTTPLQTSRTNKADSGSN  399
                L L* R*PH  DFACT +K CGTSIWRR YHQL GPRKDLMRMKSLQPL  S ESQMR RLN RV  +ELQ+K RW LI PLL+ KCSD+LWLK SG P LE+LVVERL   STTP Q    N+ D  S+
Subject   8180  LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQRKLRWLLISPLLRFKCSDKLWLKASGVPTLERLVVERLVHSSTTPFQMLHMNEDDEVSD  8569

Range 5: 8181 to 8573 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.4 bits(396) 0.0 86/131(66%) 0/131(0%) Plus/Plus
Query       11  WNYKRGDHTAQILHVLRENCVEHPFGDGNTTS*LGQERI**E*KVCSL*LLPWSHR*ERA*T*GWCQESSNKSRDGR*YCLF*SQSAQTDYG*RKAELQSWRN*WWNGWGAYQQPLCKRHARIRLIVEAML  403
                W+YK GDH   ILHVL +N VEHP GDG+TTS*LGQERI**E*KVCSL*    SHR*E A*T GW  +SSN+S DG *Y LF*  SAQT YG*R+AE Q WR+*WWNGW  +QQPL K +  +R+   A +
Subject   8181  WDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNES*DGC*YRLF*GSSAQTSYG*RQAEFQPWRD*WWNGWCTHQQPLFKCYT*MRMTKSATI  8573

Range 6: 8180 to 8365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 46/62(74%) 0/62(0%) Minus/Minus
Query       10  VQARSHL*LQGRSQRLQTFHSH*ILSWPN*LVVFPSPNGCSTQFSRSTCKICAVWSPLL*FQ  195
                VQA SHL*L  ++QRLQTFHSH*ILSWP+*LVV PSP+GCST+F  STCKI  +WSP L* Q
Subject   8180  VQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQ  8365

Range 7: 8408 to 8569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 34/54(63%) 0/54(0%) Minus/Minus
Query      238  IASTISLIRA*RLQRGC**APQPFHH*FLQDWSSAFLQP*SV*AL*LQKRQY*R  399
                +A  + LI  * L+RGC**  QPFHH* LQ W+SA LQP* V*AL  QKR+Y*+
Subject   8408  VADFVILIHV*HLKRGC**VHQPFHH*SLQGWNSACLQP*LV*ALEPQKRRY*Q  8569

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 8549 to 8854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 54/102(53%) 0/102(0%) Plus/Plus
Query       33  TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  338
                TLR+FC YYAK+VWN+ LET  PPA W+ KG+ +  K+AAFDFF GV   +ALEP  G+ R PT +E VAN    E    R    +G +S+N+GEI+GG AG
Subject   8549  TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAALEPVDGIIRKPTNSERVANETMKEAMSFRAAARDGTQSTNIGEITGGKAG  8854

Range 2: 8530 to 8853 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 50/108(46%) 0/108(0%) Minus/Minus
Query       14  PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLII  337
                PA+PP+ISP L L  PS    L  + S     AT+S  VG L+ P  GS A    TP KKSKAA    SL P L Q+AGG+ VS   F TI A*  QN R V  ++++
Subject   8530  PALPPVISPMLVL*VPSLAAALKDIASFIVSFATLSELVGFLMIPSTGSRAAELSTP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLL  8853

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 2

Range 1: 8225 to 8548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 57/108(53%) 0/108(0%) Plus/Plus
Query       15  IIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  338
                +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +ALEP+ G+ R P   E+VA  A+  V + R   A+ K +S   E++GG AG
Subject   8225  VIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRAEAAQDKNASTAHEVTGGRAG  8548

Range 2: 8227 to 8547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 50/107(47%) 0/107(0%) Minus/Minus
Query       17  PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLI  337
                PA+PP+ S  +E     A   L  +T   A  AT S+  G L +P  GS A    T  KKSKAANF FSL PF     GG+ V+  MF TI A*  QNL SVV  LI
Subject   8227  PALPPVTSWAVEAFLSWAASALCKITPLLA*AATNSS**GFLTSPFSGSKAALFETCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLI  8547

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 2

Range 1: 8246 to 8569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 56/108(52%) 0/108(0%) Plus/Plus
Query       15  IIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  338
                +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +ALEP+ G+ R P   E+VA  A+  V + R   A+ K +S   E++GG AG
Subject   8246  VIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRTESAQDKNASTAHEVTGGRAG  8569

Range 2: 8248 to 8568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 50/107(47%) 0/107(0%) Minus/Minus
Query       17  PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLI  337
                PA PP+ S  +E     A      +T   A  AT S+  G L +P  GS A    T  KKSKAANF FSL P      GGI V+  MFHTI A*  QNLRSVV  L+
Subject   8248  PARPPVTSCAVEAFLS*ADSVRCRITPLLACAATNSS*YGFLTSPFSGSKAALLDTCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLM  8568

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 2

Range 1: 8186 to 8509 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 52/108(48%) 0/108(0%) Plus/Plus
Query       15  IIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  338
                +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF  V++ +ALEP+ G+ R P   E+VA+  +  + + R   A+ K  S   E++GG AG
Subject   8186  VIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAALEPENGLVREPNHEELVASQVNKGISLHRTEAAQDKNVSTAHEVTGGRAG  8509

Range 2: 8188 to 8412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 35/75(47%) 0/75(0%) Minus/Minus
Query       17  ATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLI  241
                AT S+++G+  +P  GSSA    T  KKS A NF F L PF     GG+ V   MF TIFA*  Q    VV  LI
Subject   8188  ATNSSWLGSRTSPFSGSSAALFETCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLI  8412

Nucleotide Sequence (332 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
332

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
189.4 691.0 28% 1.04e-47 47% NC_001948
50.1 50.1 13% 8.894e-06 45% NC_025388
51.5 51.5 12% 3.43e-06 46% NC_028975
50.6 50.6 12% 6.474e-06 46% NC_005343
56.5 56.5 12% 1.042e-07 54% NC_006550

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 2561 to 2836 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 74/92(80%) 0/92(0%) Minus/Plus
Query       33  GNNCSLVIRPGEFFEMPRGMQNNYFHGVSNCENGRVSMTFRRQKLEDEDQVFISPQVPIEQKHEKLDRNMWQLGLHGIKKSISINGTSFSSD  308
                GN+CSL I P EFFEMPRGMQ NYFHGVSNC  GRVS+TFRRQKLED+D +FI+PQVPIE  HEKLDR+MWQ+GLHGIKKSIS+NGTSF+SD
Subject   2561  GNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSD  2836

Range 2: 2560 to 2835 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 71/92(77%) 0/92(0%) Plus/Minus
Query       34  SEEKLVPFIEIDFLIP*RPSCHILRSSFSCFCSMGTCGLIKT*SSSSNFWRLKVMETLPFSQLETPWK*LFCIPLGISKNSPGLITRLQLFP  309
                SE KLVPFIEIDFLIP*RP CHILRSSFS   SMGTCG +K  SSSSNFWRLKV +T P  QLETPWK*L C+PLGISKNS G I RLQ  P
Subject   2560  SEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMKIKSSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LP  2835

Range 3: 2564 to 2830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 46/89(52%) 0/89(0%) Plus/Minus
Query       39  GKACAIY*D*FFNSMKT*LPHIAIKLFMFLLNGNLWTNKDLILIFQLLASESHGNSPIFTIGNPMEVIILHTSGHLKEFTRPNHKTAII  305
                GK  AI+ + F NSMK  LPH ++KLFM  LNG+LW  +D I+IFQLLA +     P  TIGNPMEVI LH   H ++   PN + A+I
Subject   2564  GKTRAIHRNRFLNSMKAHLPHTSVKLFMIELNGHLWIYEDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMI  2830

Range 4: 2565 to 2831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 44/89(49%) 0/89(0%) Minus/Plus
Query       38  IIAVL*LGLVNSLRCPEVCKIITSMGFPIVKMGEFP*LSDARSWKMRIKSLLVHKFPLSKNMKSLIAICGS*VFMELKNQSQ*MAQAFP  304
                IIA   LG ++  +C   C  ITSMGFPIV+ G + *   A+SWKM I S  +H+ PLS  MKSL  +CG   FMEL+N   *MA+  P
Subject   2565  IIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMMI*SS*IHRCPLSSIMKSLTEVCGRWAFMELRNLFL*MARVLP  2831

Range 5: 2559 to 2819 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 43/87(49%) 0/87(0%) Plus/Minus
Query       50  CHLLRLIF*FHEDLAATYCDQAFHVFAQWELVD**RLDPHLPTSGV*KSWKLSHFHNWKPHGSNYFAYLWASQRIHQA*SQDCNYSP  310
                CH  + I *FHE  +ATY  QAFH  AQW  VD *R + HLPT G *+S   +  +NWKPHGSN  A   A ++ H A    CN  P
Subject   2559  CHS*K*IS*FHEGPSATYFGQAFHD*AQWAPVDL*RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYP  2819

Range 6: 2569 to 2832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 41/88(47%) 0/88(0%) Minus/Plus
Query       37  LQSCD*AW*IL*DAQRYAK*LLPWGFQL*KWESFHDFQTPEVGR*GXXXXXXXXSH*AKT*KA*SQYVAARSSWN*KINLNKWHKLFL  300
                LQ  + A *+  +A  +A  LLPWGFQL       D   P+VGR*   L+ ST +H*A++*KA* +YVA   SWN*+I   +WH+ +L
Subject   2569  LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR**FDLHKSTGAH*AQS*KA*PKYVADGPSWN*EIYFYEWHEFYL  2832

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 1

Range 1: 2636 to 2761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 19/42(45%) 0/42(0%) Minus/Plus
Query      186  MGNNCSLVIRPGEFFEMPRGMQNNYFHGVSNCENGRVSMTFR  311
                +G N +  ++ G+FF M    Q+ Y H V NC  GRVS+TFR
Subject   2636  VGVNATCHMKTGQFFTMDSNFQSYYQHSVQNCSEGRVSLTFR  2761

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 1

Range 1: 2639 to 2761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 19/41(46%) 0/41(0%) Minus/Plus
Query      186  GNNCSLVIRPGEFFEMPRGMQNNYFHGVSNCENGRVSMTFR  308
                G + +  ++PG+FF M    Q+ Y H V NC  GRVS+TFR
Subject   2639  GVSATCQMKPGQFFTMDSNFQSYYQHSVQNCSEGRVSLTFR  2761

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 1

Range 1: 2398 to 2520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 19/41(46%) 0/41(0%) Minus/Plus
Query      186  GNNCSLVIRPGEFFEMPRGMQNNYFHGVSNCENGRVSMTFR  308
                G+   L +RP + F MP G Q ++ H V  C  GRVS+TFR
Subject   2398  GHLTKLHLRPSQCFTMPHGFQESHKHAVEGCSKGRVSLTFR  2520

Sweet potato chlorotic fleck virus, complete genome

Sequence ID: Length: 9104 Number of Matches: 1

Range 1: 2622 to 2738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 21/39(54%) 0/39(0%) Minus/Plus
Query      156  FFEMPRGMQNNYFHGVSNCENGRVSMTFRRQKLEDEDQV  272
                +FEMPR  Q  Y+HGV  C  GR+SMTFRR    +E  V
Subject   2622  YFEMPRDFQEKYYHGVQGCSMGRISMTFRRLSSTNESGV  2738

Nucleotide Sequence (325 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
325

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
245.8 653.7 52% 1.089e-64 38% NC_001948
110.1 247.6 18% 7.49e-27 32% NC_008552
106.9 238.4 32% 1.918e-26 32% NC_028111
106.5 190.2 18% 3.588e-26 52% NC_029089
113.8 192.4 24% 2.135e-27 45% NC_009991

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 5

Range 1: 872 to 1195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 98/108(91%) 0/108(0%) Minus/Plus
Query        1  DVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSG  324
                D++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSG
Subject    872  DIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSG  1195

Range 2: 871 to 1194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.7 bits(412) 0.0 87/108(81%) 0/108(0%) Plus/Minus
Query        2  PLLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSLMPMASKPEKHRMLDTRRLLIGVKLNK*WQNFE*RTS  325
                PLLPQ ITSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRS MP+ASKPEKHRM + +RL IGVKL+K   NFE*  S
Subject    871  PLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMS  1194

Range 3: 872 to 1195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 43/108(40%) 0/108(0%) Plus/Minus
Query        1  ATSSTTYNK*SKVFNEFNLSSSRLVNKLTQFRLGRFFIRFFKSSQIEVYFSNDIMMHRKAAMHAAT*RLQILNAYGVKTRETPNVRYQKIINRCKAQQVMAEF*VKDI  324
                AT  T Y  * K+ ++  L       +L++  LGR  I   +SSQI++Y S +IMM+ +A +HAA *R +I  AY ++ R+T +V  QKI +R + +QV+ +F*V D+
Subject    872  ATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*VNDV  1195

Range 4: 880 to 1194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 40/105(38%) 0/105(0%) Minus/Plus
Query        2  SLKILPSLVELYTD**SSGI*HSVFLWF*RHRH*GSGASKSRHA*LLSGAS*CRY*NIPLFENS*KT**RICRGEIASAY*QAYWKRD*IH*RLCFTCYKLWKKW  316
                SLKI   L   +   *S    H++F W   +RH  S  SK RHA LL   S*C  *+I LFENS +  * +CRG+ ++ + + + + D ++     T  KLW++W
Subject    880  SLKI*SPLA*FHPYG*SFDFKHAMFFWLRCNRHKRS*TSKPRHAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEW  1194

Range 5: 879 to 1100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 34/74(46%) 0/74(0%) Plus/Minus
Query       96  PRQILYQVF*EFSNRGIF**RHHDAPESSYACRDLEAPDP*CLWRQNQRNTEC*IPEDY*SV*SSTSDGRILSE  317
                PRQ  Y   *EFSN+ I * +HHD   S+ ACR LE  D  CL  ++Q+N  C   +DY   *+  S   ILSE
Subject    879  PRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE  1100

Narcissus symptomless virus, complete genome

Sequence ID: Length: 8281 Number of Matches: 4

Range 1: 881 to 1171 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 49/97(51%) 0/97(0%) Minus/Plus
Query        7  HLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGR  297
                H L+     + +   IR F  FDA+    L+PL R +   FP+  +V++KIY YLRTL+KPD +SA AKL QLI  PTG EIKFIE+FA LVI  G+
Subject    881  HHLTSITKGDAITEEIRTFGNFDAVSASHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLIVDPTGFEIKFIEEFAPLVIETGK  1171

Range 2: 857 to 901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 10/15(67%) 0/15(0%) Minus/Plus
Query      280  DVLHSKFCHHLLSFT  324
                D++HSKF HHL S T
Subject    857  DLVHSKFSHHLTSIT  901

Range 3: 926 to 1156 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 25/77(32%) 0/77(0%) Plus/Minus
Query       22  NK*SKVFNEFNLSSSRLVNKLTQFRLGRFFIRFFKSSQIEVYFSNDIMMHRKAAMHAAT*RLQILNAYGVKTRETPN  252
                N+ S+  N+FN  +SR+  +LTQF  G   +R  K S+I + F+N+I  +R++  +  T   Q+     +K  E+P+
Subject    926  NERSEFLNKFNFETSRVNYELTQFSYG*LNVRLLKGSEISINFANNINTNRESLTNVPTKWFQM*GRNSIKITESPD  1156

Range 4: 1000 to 1173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 31/58(53%) 0/58(0%) Plus/Minus
Query        5  LLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK  178
                +LP  IT  A SS+NLIS PVG ++S* N A AD  SGF RVL+   IL+ T    GK
Subject   1000  ILPVSITRGANSSINLISKPVGSTMS*PNLAMAD*TSGF*RVLRYL*ILLITLILIGK  1173

Nerine latent virus isolate Marijiniup 4, complete genome

Sequence ID: Length: 8334 Number of Matches: 4

Range 1: 960 to 1217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 45/86(52%) 0/86(0%) Minus/Plus
Query        7  LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGR  264
                +  ++R F  FDA+    L+PL R +   FP+  +V++KIY YLRTL+KPD +SA AKL QL+  PTG EIKFIE+FA LVI  G+
Subject    960  ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGK  1217

Range 2: 903 to 947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 10/15(67%) 0/15(0%) Minus/Plus
Query      280  DVLHSKFCHHLLSFT  324
                D++HSKF HHL+S T
Subject    903  DLIHSKFSHHLISIT  947

Range 3: 1046 to 1219 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 32/58(55%) 0/58(0%) Plus/Minus
Query        5  LLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK  178
                +LP  IT  A SSMNLIS PVG + S* N A AD  SGF RVL+   IL+ T    GK
Subject   1046  ILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGK  1219

Range 4: 969 to 1190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 24/74(32%) 0/74(0%) Plus/Minus
Query       34  KVFNEFNLSSSRLVNKLTQFRLGRFFIRFFKSSQIEVYFSNDIMMHRKAAMHAAT*RLQILNAYGVKTRETPNV  255
                K FNEF+L +S +   LT    GR  IRF +SS++ +  +N I  + ++    +  RL++ + Y VK  ++ N+
Subject    969  KFFNEFDLKTSWIN*XLT*LGNGRLHIRFLESSKVPIDLTNYINTNGESLTDISPKRLKMPS*YCVKITKSSNI  1190

Elderberry carlavirus E isolate EBCVE, complete genome

Sequence ID: Length: 8540 Number of Matches: 3

Range 1: 959 to 1213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 45/85(53%) 0/85(0%) Minus/Plus
Query       10  LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCG  264
                + +  R +  FDA+    L  +SR + +CFPV  + V+KIY YLRTLKKPD +SA AKL QLI  PTG EIKF+E+F+ LVI  G
Subject    959  ITNTYRSYGPFDAVSCTGLSMISRDVRNCFPVTFETVSKIYRYLRTLKKPDIQSAMAKLSQLIPDPTGPEIKFLEEFSKLVIKTG  1213

Range 2: 902 to 946 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 9/15(60%) 0/15(0%) Minus/Plus
Query      280  DVLHSKFCHHLLSFT  324
                D++HSKF HHL++ T
Subject    902  DIIHSKFAHHLVAIT  946

Range 3: 1042 to 1215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 30/58(52%) 0/58(0%) Plus/Minus
Query        8  LPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQ  181
                +P LIT+   SS NLIS PVG  IS  + A AD +SGF +V +   IL T S  TGKQ
Subject   1042  VPVLITNLENSSKNLISGPVGSGISWLSLAMADWISGFFKVRRYL*ILDTVSKVTGKQ  1215

Phlox Virus B, complete genome

Sequence ID: Length: 9058 Number of Matches: 3

Range 1: 940 to 1179 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 47/80(59%) 0/80(0%) Minus/Plus
Query       16  NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVIS  255
                N+R F  FDA   + LEPL+  +  CFPV  +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS
Subject    940  NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIIS  1179

Range 2: 874 to 918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 9/15(60%) 0/15(0%) Minus/Plus
Query      280  DVLHSKFCHHLLSFT  324
                DV+ SKF HHL++ T
Subject    874  DVVQSKFAHHLIAIT  918

Range 3: 963 to 1169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 31/69(45%) 0/69(0%) Plus/Minus
Query       26  SEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSLMPMAS  232
                ++AKS  NLIS P G  I+  + A AD  SGF  V + RY L TTS  TGKQ     + GS     +AS
Subject    963  NDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS  1169

Nucleotide Sequence (955 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
96
192
288
384
480
576
672
768
864
955

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 3065 to 4015 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
724.1 bits(1574) 0.0 297/317(94%) 0/317(0%) Minus/Plus
Query        3  GSFEVFKGDFNIKKMEEGSIFVITYKAPVRSTGKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGSL  953
                GSFEVFKGDF+IKKMEEGSIFVITYKAP+RSTG+LRVH +ECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLL TDGLALKAGIRSFVESE LVSP+LSAP I KQL EN YAENEMIALFCIRHHVR IVITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLC+PST HIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINP GKISALFDITNEHIRHVEKIG+GPQSIKVDELRKVKRSALDFLSMNGSKITYFP+FERAEKLQG L
Subject   3065  GSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCL  4015

Range 2: 3064 to 4017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
594.4 bits(1291) 0.0 283/318(89%) 0/318(0%) Plus/Minus
Query        1  SKLPCNFSARSKFGK*VILDPFIDRKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPNCL*MVGAERFGLTRHSLSTKDLIPAFKARPSVPSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSVL*TLNLPVDLTGALYVITKMEPSSIFLMLKSPLNTSKDP  954
                SK PCNFSARSK GK*VILDPFI+RKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSN AEILP GLITSISPF+SHLAQMSKASKASAKYI+LRPPP  +SSK+* VLGLHR*F+TSTSRLP+AEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHS SPNFQLTSYSGVITI LTWC MQN AIISFSA* FS NCL + GAER GLT+ SLSTKD IPAF+A PSV SKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHS L*TLNLPVDL GALYVITK+EPSSIFLM KSPL TSKDP
Subject   3064  SKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDP  4017

Range 3: 3068 to 4015 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
496.8 bits(1078) 0.0 218/316(69%) 0/316(0%) Plus/Minus
Query        3  QTPLQFFSPLKVWEVGYLGPIH*QKIKSGSLDLPQLIHFYALRATSNLLNMPYVFISYVK*GRNLAIRVNHLNFTIYVTLGANVKSFKGFSQVHHIKAASLAQLLKNVIGAGLAQVIQHVNFTPPQC*SNGCDHATIQWGAWLEVI*FKTKNSXXXXXXXXXXXXDFIFWCDHYQPHMVPNAK*GNHLILGINILSQLFVNGWS*EVWTY*AFTFHKRSNTSL*GKTISAEQKTN*MPKTITITRHREGIEVINIIISTCFNLAA*QHLLGPGK*AFSFVNPQFAS*PNWSLICYHKNGAFLHFLDVEVPFEYLKR  950
                QT LQ FSPLK WEVGY  PIH*++I+ GSLDLPQ IHFYALRA +  LNMPYV ISYVK  RN   R+NH N +IY+T  ANVK  K FS +HH+KA SL +LLKN+I AG  Q+I H+NFTP +C*SNGCDHATIQWGAWLEVI*FK KNST*GPLT P+ PT+FIFWCDHY+P++VPNA+* +HLILGI+IL QLF N W *++WTY A T H+RSNT L*GK+ISA+ KTN MPK I ITRHRE +++INIIISTC NLAA*Q+L G GK*AF  VNPQ AS  NW L+ Y+KN  FLH L+V+VPFE  KR
Subject   3068  QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKR  4015

Range 4: 3063 to 4016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
451.5 bits(979) 0.0 218/318(69%) 0/318(0%) Minus/Plus
Query        2  WDLLRYSKGTSTSRKWRKAPFL**HIRLQLGQLAN*GFTKLNAHFPGPRRCC*AARLKHVLIMILMTSIPSLCLVMVIVFGIQLVFCSALMVLP*RLVLDLLWKVNA**VQTSQLQPFTNNWERMFMPRMR*LPYFALGTM*G***SHQNMKSVGSLGRVSGPYVEFFVLNQITSNHAPH*MVA*SQPLLQHWGGVKLTC*ITCASPAPITFLRSCAKEAALI*CTWLKPLKLLTFAPSVT*MVKLR*LTLMARFLPYLT*LMNT*GMLRRLEVALRA*KWMSCGRSSDPLLIFCQ*MGPR*PTSQTLSGLKNCKGVC  955
                W LL++SKGT T R+WRK  FL**  R QL  LA *GFT  NAHFP P+R C*AARL+HVLIMILM    SLCLVM I FGI LVF  ALM LP*R V DL W+V+A *VQ  Q Q F NNW+RM MPRMR*  Y A GT *G **SHQNMK VG+ G+VSGPYVEFF LNQITSNHAPH*MVA*SQPLLQH  GVKL C*I C  PA I FLRS  +E AL *C  LK L+ LTFA +V *M +L+*L  + +FL  LT*LM+T*GMLR+  +ALRA*KWM+CGRSSDP  I  Q*MG +*PTSQ LSGLK+CK VC
Subject   3063  WGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC  4016

Range 5: 3123 to 4016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
441.9 bits(958) 0.0 204/298(68%) 0/298(0%) Plus/Minus
Query        2  ANSLAIFQPAQSLGSRLSWTHSLTENQERIA*PSATHPLLCSEGHFQSSQHALCVH*LCQIRQKSCH*G*SPQFHHLCHTWRKCQKLQRLQPSTSY*GRLLGTTPQKCDRCWACTGNSARQLHASPMLKQWL*SCNHSVGRMVGSDLI*DKEFHIGATHSPQTSN*LHILV*SLSASHGA*CKIRQSSHSRHKHSLPIVCEWLELRGLDLLGIHFPQKI*YQPLRQDHQCRAKNQLNAKNNYHHQAQRRY*SHQYHNQHMLQSGSLATPPWTRKMSIQFCEPSICQLT*LEPYMLSQK  895
                AN LA FQPAQSLGSRL  THSL  N+ RIA*PSA HPLLCSEGH+  SQHALC H*LCQ  QK  H  *S Q  HL H  RKCQ+ Q+LQ +TS *G L    PQK D CW  T N   QLHA  +LKQWL*SCNHSVGRMVGSDLI* KEFHIGATH P+ SN*LHILV*SL A  GA C+I +SSHSRHKHSLPIV + L L+ LDL   H P+KI Y+PL Q HQC  KNQ NAK+N HHQAQR+ *+HQYHNQHM QSGSLA P W RKMSI  CEPS CQ  *L P  L QK
Subject   3123  ANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQK  4016

Range 6: 3421 to 4017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
302.6 bits(654) 0.0 141/199(71%) 0/199(0%) Minus/Plus
Query        1  TIGRECLCRE*DDCLILH*APCEADSDHTRI*SQLEVWGE*VAPMWNSLS*IKSLPTMRPTEWLHDHSHCFSIGEA*S*RAELPVQAQHLSHF*GVVPRRRP*YDVLG*SL*SF*HLRQV*HKW*N*GD*P*WQDFCLI*HN**THKAC*EDWKWPSEHKSG*VAEGQAIRS*FSVNEWVQDNLLPKL*AG*KIAREFA  597
                TIGRECLCRE*DD +ILH AP +A SDHTRI*S LE+ G *VAPMWNSL *IKSLPTMRPTEWLHDHSHCFS  +A*S*  +L V  QH S+F*G +  R P*+DV  *S *  *HLR +*+KW +* D*  W +FC++*HN** HKAC*E+  WPSEHKSG*+AEGQAIR  F  NEWV +NLLPKL*AG*K+AR FA
Subject   3421  TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFA  4017

Range 7: 3064 to 3279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 46/72(64%) 0/72(0%) Minus/Plus
Query      739  GIF*GIQRGLQHQENGGRLHFCDNI*GSS*VNWQIEGSQN*MLIFRVQGGVARLPD*SMC*L*Y**LQYLLC  954
                G+F*  QRGL H E+GGR +FC+N+ G +*++WQ+EGSQ  MLIFR+Q G+ARLPD* MC*L*Y**  + LC
Subject   3064  GVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLC  3279

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 7

Range 1: 3454 to 4071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 85/206(41%) 0/206(0%) Minus/Plus
Query        3  LSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGSL  620
                +  P + KQL  NV+AE E +A FC  + ++L V+    E +W F   E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L KP+   +F+E+ +G G ++  L+  FE F IC   D  GE+ ++N  G+I A F +  EH+ H+  +     S  V +L +V  SA+ FL+MNG++I Y P+ +RA  L  SL
Subject   3454  VKCPRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSL  4071

Range 2: 3193 to 3474 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 34/94(36%) 0/94(0%) Minus/Plus
Query      615  IFVITYKAPVRSTGKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLS  896
                + +   K  +   G+LR H+ EC  S   E L GC +     ++ D +++F V  DGNCFWHSVG L+G DG  +K  +    + +C+  P LS
Subject   3193  VVIAFLKPKMTQGGELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLS  3474

Range 3: 3474 to 3911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 55/146(38%) 0/146(0%) Plus/Minus
Query      163  CSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPNCL  600
                CS    N A ILP  L    SP +S L Q+ K SK+  +  IL+P P   SS      GL R   TSTS    AEAMA++ QPF+G  G K*   + ++     S   N Q+ S     T +L     Q  A  S SA T   +CL
Subject   3474  CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHSSLA*STFNLIP*WEQK*ATASLSAQTLFSSCL  3911

Range 4: 3342 to 3419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 16/26(62%) 0/26(0%) Plus/Minus
Query      670  FKARPSVPSKKPTECQKQLPSPGTEK  747
                F   PS P + PTECQKQLPS  T K
Subject   3342  FMHSPSTPIRGPTECQKQLPSASTSK  3419

Range 5: 3987 to 4073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 14/29(48%) 0/29(0%) Plus/Minus
Query        1  SKLPCNFSARSKFGK*VILDPFIDRKSRA  87
                SKL     ARS  G * I  PFI R   A
Subject   3987  SKLSSKVEARSMDGL*SISAPFIARNLMA  4073

Range 6: 3634 to 3867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 26/78(33%) 0/78(0%) Plus/Minus
Query      207  VNHLNFTIYVTLGANVKSFKGFSQVHHIKAASLAQLLKNVIGAGLAQVIQHVNFTPPQC*SNGCDHATIQWGAWLEVI  440
                +NH  FT  +   AN K+FK   ++   +A S    +K +     A+  Q++N +P    SNG + ATI   A LE+I
Subject   3634  INHD*FTSSIHTPANRKNFKEPGEIKDTEAPSFRNFIK*IFMCRFAKDCQNINLSPI*SRSNGPNDATIYRHARLEMI  3867

Range 7: 3341 to 3406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 9/22(41%) 0/22(0%) Plus/Minus
Query      683  HQCRAKNQLNAKNNYHHQAQRR  748
                HQ + +   NA+NNYH    +R
Subject   3341  HQRQLEAPQNARNNYHQHQHQR  3406

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 3450 to 4064 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 83/205(40%) 0/205(0%) Minus/Plus
Query        6  LSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGS  620
                +  P + KQL  N +AE E +A FC  + +RL V+    E +W F   E      L  + NHF+PC P+NGC+I AI+SAL RREVDVL  L KP+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N NG+I A F +  EH+ H+  +     S  V +L +V  SA+ FL++NG+++ Y P+ +RA  L  S
Subject   3450  VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDS  4064

Range 2: 3228 to 3470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 34/81(42%) 0/81(0%) Minus/Plus
Query      615  GKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLS  857
                G+LR H+ EC  S   E L GC +     ++ D F++F V  DGNCFWHSVG L+G DG  LK  +    + + +  P LS
Subject   3228  GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLS  3470

Range 3: 3458 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 54/150(36%) 0/150(0%) Plus/Minus
Query      163  CSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPNCL*MVG  612
                CS    N A ILP  L    SP +S L Q+ K S    +  +L+P P   SSK     GL     TSTS   +AE +A+I  PF+G  G K*   +  +     S   N Q+ S     T SL     Q  A  S SA  F  NCL  +G
Subject   3458  CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*LS*QINVAAFNTS*GLNIQVHSSLV*STFSLIP*WEQK*ATASLSAQVFPSNCLLNLG  3907

Range 4: 3251 to 3415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 24/55(44%) 0/55(0%) Plus/Minus
Query      670  FKARPSVPSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHS  834
                FK  PS P   PTECQKQ PS  T K  K S S         P + S+  +N HS
Subject   3251  FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHS  3415

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 5

Range 1: 3451 to 4065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 85/205(41%) 0/205(0%) Minus/Plus
Query        6  LSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGS  620
                +  P + KQL  N +AE E +A FC  + +RL V+    E +W F   E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L KP+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N NG+I A F +  EH+ H+  +     S  V +L +V  SA+ FL++NG++I Y P+ +RA  L  S
Subject   3451  VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDS  4065

Range 2: 3229 to 3471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 34/81(42%) 0/81(0%) Minus/Plus
Query      615  GKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLS  857
                G+LR H+ EC  S   E L GC +     ++ D F++F V  DGNCFWHSVG L+G DG  LK  +      + +  P LS
Subject   3229  GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKKILHDQALKDGVKCPRLS  3471

Range 3: 3636 to 3917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 36/94(38%) 0/94(0%) Plus/Minus
Query      154  CLMCSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK  435
                C  CS    N A ILP  L    SP +S L Q+   S +  +  IL+P P   SSK     GL     TSTS   +AEA+A++  P +G  G K
Subject   3636  CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLK  3917

Range 4: 3228 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 26/63(41%) 0/63(0%) Plus/Minus
Query      670  FKARPSVPSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSVL*TLNLP  858
                FK  PS P   PTECQKQLPS  T K  K S S         P + S+  ++ HS    L+ P
Subject   3228  FKYSPSTPINGPTECQKQLPSASTSKEWKRSGSNFLLNMTEHP*SFSVRSDSSHSSSWDLSSP  3416

Range 5: 3631 to 3909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 29/93(31%) 0/93(0%) Plus/Minus
Query      162  VFISYVK*GRNLAIRVNHLNFTIYVTLGANVKSFKGFSQVHHIKAASLAQLLKNVIGAGLAQVIQHVNFTPPQC*SNGCDHATIQWGAWLEVI  440
                VF    K  R+ +I +NH  F+  V    N + FK  SQ+ + + ++L    K V  + LAQ   ++N    +C*SN      I W A  E++
Subject   3631  VFFLQRKFSRDPSILINHN*FSTCVHTATN*EYFKQPSQIENTETSTLCDFFKKVFMSRLAQHS*NINLPTTKC*SNRSYDTPINWHAGFEMV  3909

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 3326 to 3922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 78/199(39%) 0/199(0%) Minus/Plus
Query        3  KQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGSL  599
                +Q+  + +AE E +A FC  + ++L V++    V+W F  ++      L  + NHF PC P+NGC++ AIASALGRRE+DVL  L KP    ++E+ C G G  +  L   FE F I A+ D  G +  +N +GKISA F +  EH+ H++++     S  + +L  V +SAL  L +NGS+I+Y P+ +RA+ L  SL
Subject   3326  RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSL  3922

Range 2: 3059 to 3283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 35/75(47%) 0/75(0%) Minus/Plus
Query      657  YKAPVRSTGKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIR  881
                YK  +    +LR H  EC  S   E L GC +     ++ D+F+ F VPGDGNCFWHSVG L+G DG+ LK  +R
Subject   3059  YKPRLGKGMQLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLKGILR  3283

Nucleotide Sequence (523 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
523

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
278.3 1324.5 35% 6.684e-84 53% NC_001948
183.0 387.3 30% 1.682e-52 29% NC_012038
193.5 432.7 30% 7.184e-54 30% NC_009892
195.8 442.2 30% 1.083e-54 30% NC_003462
187.6 398.3 29% 4.328e-52 31% NC_014821

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 5189 to 5563 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.3 bits(601) 0.0 112/125(90%) 0/125(0%) Minus/Plus
Query        3  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLVHE  377
                WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ + HE
Subject   5189  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHE  5563

Range 2: 5078 to 5140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 20/21(95%) 0/21(0%) Minus/Plus
Query      426  VRAEKLCGDPWLKVMLFLGQD  488
                VR EKLCGDPWLKVMLFLGQD
Subject   5078  VREEKLCGDPWLKVMLFLGQD  5140

Range 3: 5188 to 5538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(455) 0.0 91/117(78%) 0/117(0%) Plus/Minus
Query       28  LAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLNH  378
                LAF+G  +RK S+KNFPYG ARL+ AAST GFENLRRF TAMRKV ES PLCLG MLSNLSHALL+CS  P LCSSKNC V+S*P RTSR SF AI PTHLALVDS+LL GMWVLNH
Subject   5188  LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH  5538

Range 4: 5083 to 5121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 8/13(62%) 0/13(0%) Plus/Minus
Query      445  MTFSQGSPHSFSA  483
                +TF+ GSPH+FS+
Subject   5083  ITFNHGSPHNFSS  5121

Range 5: 5078 to 5563 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.9 bits(443) 0.0 91/162(56%) 0/162(0%) Plus/Minus
Query        3  FMHQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRITTQLLRPH  488
                FM    I+   QWD   E + *+FPIW   P F SFNL LR+F+T  DSHEEG+*II+FM W+ AFK  TCIAQLL  STP+ IKELL  FITT+H  +  Q H ++PPGPG* Q+T  DVGF+PF I A      NF ILIL +EKH+ *P +TT LL P+
Subject   5078  FMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPN  5563

Range 6: 5082 to 5564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 93/161(58%) 0/161(0%) Minus/Plus
Query        2  GRRSCVVILG*RSCFSLAKMRIAKLRNLKLSARMRNGSKPTSH*VTWNQPGPGGLERWR*RNIVKCDVVMKRPNSSLMNTGVEKASN*AMHVKDLKAYIQDIKVMIQ*PSSWLSGNVLNSRSLKLKLQN*GAQSHMGNFYWTPSFRRSH*MQATMQTWCMK  484
                GRRS VV  G*+ CFS  KMRI KL+    +A+M+NG KPTS *V W+QPGPGG  +W *++I +C VVMK  N+SLM+ GVE  SN*AMHV+ LKA+ Q IK MIQ*PSSWLS +V N RS +LKL N*G  +HMGN Y   S+ +SH*    + +  MK
Subject   5082  GRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMK  5564

Range 7: 5067 to 5531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.6 bits(401) 0.0 85/155(55%) 0/155(0%) Plus/Minus
Query       35  SVGPSKGRCPVKISHMALRALILQLQLEASRI*DVS*QP*GRSLNHYLYVLDICFQIFHMHCSIARFFHTCVHQRTVGSFHNHIALHDVPSTPSFQPTWPWLIPSYLMGCGF*TIPHSSTQFQVPQLRNPHLGQGKA*PLAKDHHTASPPSQLQT  499
                S+G   G+  ++ISHM   A + QLQ  AS+I*D   QP*GR LNH+LY L  CFQ  HMHCS+A  FH   HQR V SFHNH A  D  S P + PTWPWL P Y  GCGF*TI H S      QL NPHL  GKA* L   HH  SPP  L +
Subject   5067  SMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHS  5531

Range 8: 5077 to 5532 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 80/152(53%) 0/152(0%) Minus/Plus
Query       34  CEGGEAVW*SLAKGHAFPWPR*GLRS*GT*N*VLE*GMVQNPHPIK*LGINQGQVGWKDGVEGTS*SAMWL*NDPTVL**TQVWKKRAIEQCM*KI*KHISKT*R**FSDLPHGCQETS*ILEASS*SCKIKARKAIWEIFTGHLPFEGPTE  489
                C GGE +W* + K +AFP  R*GL S*     +L+* MV NPHP++* G+NQGQVG  +G+E  S  A+WL*ND T+L**   W   A EQCM*++*KH+ K *R *F++LPHGC + S I EA  *SC+ +A + IWEI     P + P E
Subject   5077  C*GGEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIE  5532

Helleborus net necrosis virus, complete genome

Sequence ID: Length: 8542 Number of Matches: 4

Range 1: 4568 to 4924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.0 bits(393) 0.0 74/119(62%) 0/119(0%) Minus/Plus
Query       21  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHN  377
                WFKTH+PL  +ES RA WV     KE+REVR GY  + QF DEH   + + L+NA ERFE+IYPRHK +D+VTFLMAV+KRL+FSKP VE AKL  A+ YGK+LLD FL  VPL A HN
Subject   4568  WFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHN  4924

Range 2: 4439 to 4519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/27(63%) 0/27(0%) Minus/Plus
Query      426  LGVFGVVRAEKLCGDPWLKVMLFLGQD  506
                LG    VR +KL GDPWLK M+FLGQ+
Subject   4439  LGKDHCVREDKLAGDPWLKTMVFLGQE  4519

Range 3: 4567 to 4914 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 55/116(47%) 0/116(0%) Plus/Minus
Query       31  AFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLNH  378
                AF+GT  +K+SS+ FP   A  + A ST G ENL+RF TA+RKVT SL LCLG M S  S A ++       CSS N  +  *P RTS  SF   F T  A   S    G  VLNH
Subject   4567  AFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH  4914

Range 4: 4466 to 4936 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 46/157(29%) 0/157(0%) Plus/Minus
Query        9  HQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRITTQLL  479
                H+  IV   Q    +E V+*   +     *  + N R R+       H++ + I  F+ W+  FK+ + I +  +    V I +L+   I  +HF++F    + +P     F +T  +V FEP+  +   F    F IL LAKE H   PRIT++L+
Subject   4466  HEFRIVLGFQRHKFQEIVK*ILSVASSLI*LSALNHRFRKS*ALLHGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPWFSQYRFFNL*LFNILFLAKEHHCFQPRITSKLI  4936

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 5087 to 5455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 76/123(62%) 0/123(0%) Minus/Plus
Query        9  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLV  377
                WFKTHIP+  LE+ RARWV K+  KE RE R G+E T+QF DEH     +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +PL   H+++L+
Subject   5087  WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLM  5455

Range 2: 4976 to 5035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 14/20(70%) 0/20(0%) Minus/Plus
Query      429  VRAEKLCGDPWLKVMLFLGQ  488
                VR  KL GDPWLK  +FLGQ
Subject   4976  VREPKLSGDPWLKTAIFLGQ  5035

Range 3: 5089 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 59/112(53%) 0/112(0%) Plus/Minus
Query       40  GTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLN  375
                G + RKV  +N P G A LN A S  G+E    FLTA+R VTES+PLCLG ++S LS AL+ C     LCSS NC V S*P   S  SF +I  THLAL  S+   GM VLN
Subject   5089  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN  5424

Range 4: 4994 to 5461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 47/156(30%) 0/156(0%) Plus/Minus
Query        3  FMHQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRITT  470
                F H++ I+   +  +  EG+Q +F  W  +P*F +FN  L E + F +SH E   +   M  I +F  F+C+  L A+   +F+ +LL   +T    + FL ++  +PP P   +   W+V FEP  +      FL   + +L ++     P ITT
Subject   4994  F*HEIAIMLTAKRYIL*EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT  5461

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 6

Range 1: 5238 to 5612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.8 bits(421) 0.0 76/125(61%) 0/125(0%) Minus/Plus
Query        3  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLVHE  377
                WFKTHIP+ +LE+ RA+WV K+  +E RE R G  TT+QF D+H   + ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VPLN+SH+  ++ E
Subject   5238  WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQE  5612

Range 2: 5127 to 5189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 14/21(67%) 0/21(0%) Minus/Plus
Query      426  VRAEKLCGDPWLKVMLFLGQD  488
                VR  KL GDPWLK  +FLGQ+
Subject   5127  VREAKLVGDPWLKTKIFLGQN  5189

Range 3: 5390 to 5611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 40/74(54%) 0/74(0%) Plus/Minus
Query        4  SCTRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLN  225
                SC  F+  L F GT  RKVSS+N P G A  +FA S  G E L  FLTA+R V  S+PLCLGY+ S  S AL+N
Subject   5390  SCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN  5611

Range 4: 5240 to 5365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 21/42(50%) 0/42(0%) Plus/Minus
Query      250  SSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLN  375
                SS NC VV  P R S  S      TH AL  S+L+ GM VLN
Subject   5240  SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN  5365

Range 5: 5149 to 5259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 11/37(30%) 0/37(0%) Plus/Minus
Query      356  MGCGF*TIPHSSTQFQVPQLRNPHLGQGKA*PLAKDH  466
                +GC  *T P         Q ++    QG++  L  DH
Subject   5149  LGCAS*TNPRPPQPHPRFQFQSQDFAQGRSWSLTMDH  5259

Range 6: 5148 to 5612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 46/155(30%) 0/155(0%) Plus/Minus
Query        3  FMHQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRIT  467
                F+H   I+  IQ    ++GV+ +F     +  FC    R  E ++  + H++   I   M  +Y+F + + I+ LL     V I ELL   +T +   +  +    NP      +   WDV  EP L R    +  NF + IL KE   L*P IT
Subject   5148  FLHHFFIMTAIQRHSFQKGVKQEFAERFGSSKFCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPILGRLNLIRDFNFKVRILPKEDLGL*PWIT  5612

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 5242 to 5610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.6 bits(403) 0.0 72/123(59%) 0/123(0%) Minus/Plus
Query        9  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLV  377
                WFKTH+P+  LE+ RA+WV ++  KE RE R G  TT+QF DEH   +  +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VPL+  H++ ++
Subject   5242  WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMM  5610

Range 2: 5131 to 5190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 14/20(70%) 0/20(0%) Minus/Plus
Query      429  VRAEKLCGDPWLKVMLFLGQ  488
                VR  KL GDPWLK  +FLGQ
Subject   5131  VREAKLVGDPWLKTKIFLGQ  5190

Range 3: 5244 to 5597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 58/118(49%) 0/118(0%) Plus/Minus
Query       22  LWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLN  375
                L L   GT  +KVS +NFP G A LN A S  G E L  F TA++ V  S+PLCLG M S LS AL++ S    LCSS NC VV  P R SR S  +   TH AL  S  + G  VLN
Subject   5244  LCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN  5597

Range 4: 5152 to 5610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 47/153(31%) 0/153(0%) Plus/Minus
Query        9  HQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRIT  467
                H    +  IQ D  ++G++ KF      P F  F+    E   F  SH E   I + MSW+  F  F+C+ +       VFI EL    +  S F++ L    ++P  P   +   W +  EP L     FK + F +  LAKE   L*P I+
Subject   5152  HHFTAMLAIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGIS  5610

Nucleotide Sequence (509 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
51
102
153
204
255
306
357
408
459
509

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
270.0 1381.2 12% 1.048e-71 63% NC_001948
114.2 249.0 28% 1.328e-31 44% NC_009892
112.0 333.6 16% 2.664e-35 37% NC_014821
101.4 236.6 21% 1.607e-31 38% NC_025388
102.8 230.6 24% 2.991e-31 43% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 7064 to 7492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.0 bits(583) 0.0 112/143(78%) 0/143(0%) Minus/Plus
Query        1  KEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHRNKLILMQ*NAFSAACQLGKDHNSIDCWFGHWACAALFEEVKFTIFWR*HPSISSRGALQGRHNKNNLLWP*TVLSQLRDIRAV*KLCALNA  429
                KEAVDLA AH SEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHR KLI+MQ*+AFSAAC+LGK+HNSID W GHWACAA  EEVK T+F   HPSI SR ALQGR+ K NLLW   +L QL DIR +*+ CALNA
Subject   7064  KEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNA  7492

Range 2: 7064 to 7492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.0 bits(572) 0.0 113/143(79%) 0/143(0%) Plus/Minus
Query        1  SIKGTKFSDCPNIPELGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNGVMVFAQLAGC*KGILLHKD*FIPMSCSSNIKPVPVFRGWVS*F*KGYNVKG*TSNLTGQLEFGFVRSSKIHRLL  429
                SIKGTKFSD PNIPELGKDC GPQ*VIL VPSL*RPP*GN*WMLSPE G+FDFL+KCSTSPMPKPTVNGVMVFAQ AGC*KGILLH   F+P+SCSSN+KPVP+  GW+S*F K Y+VK *TSN T   EF  VR+S+IH LL
Subject   7064  SIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLL  7492

Range 3: 7092 to 7490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.7 bits(567) 0.0 112/133(84%) 0/133(0%) Minus/Plus
Query        3  TNPNSSCPVRFEVQPLTL*PF*NQETQPLKTGTGFILLLQDIGIN*SLCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIFGQSENFVPLM  401
                T  NS+  V+ EVQ LT * F*NQE QP + GTGF LLLQD G N*  CSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGT  ITYCGPKQSFPSSGIFGQSENFVPLM
Subject   7092  TTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLM  7490

Range 4: 7063 to 7491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
242.5 bits(523) 0.0 108/143(76%) 0/143(0%) Plus/Minus
Query        2  ALRAQSFQTARISLSWERTV*GHSKLFLLCRPCNAPREEIDGCYLQNMVNLTSSKSAAQAQCPNQQSMELWSLPNWQAAEKAFYCIRINLFLCLVAAI*NQCLSSGVGSLDFKRVTTLKVEPRTSQGNLNSDLCAAARSTASL  430
                ALRAQ+ Q  RIS SW R    HSKL+ L RPCNA RE IDGC   N V+LTSS++AAQAQCP+Q SMELW LPN QAAEKA YC+ IN  LCLVAA+*NQCLSSGVGSLDFKRVTTLKVEP TSQGNLNS+LCA ARSTASL
Subject   7063  ALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASL  7491

Range 5: 7185 to 7490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.9 bits(347) 0.0 73/102(72%) 0/102(0%) Plus/Minus
Query        3  H*GHKVFRLPEYP*AGKGLFRATVSYSCCAVPVTPPVRKLMDVISRIW*I*LPQKVQHKPNAQTNSQWSYGLCPIGRLLKRHFTA*GLIYSYVL*QQYKTSA  308
                H*GHK+ RL EYP AG+GL   TVSY+ C VPVTP VR+LMDV+  I *I*LPQK+QHKPNAQ N QWSYG CPI RLLKRH TA*  I   VL*QQ KTSA
Subject   7185  H*GHKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSA  7490

Range 6: 7078 to 7281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 43/68(63%) 0/68(0%) Minus/Plus
Query      212  SCCCAQIRIQVAL*GSRFNL*RCNPFKIKRPNP*RQALVLYCCYKT*E*INPYAVKCLFSSLPIGQRP  415
                S CCAQ+ IQ+ L*  RFN *R N F+IKR NP   ALVL+CCYKT   I+ +AV+CLFSSL IGQ+P
Subject   7078  SRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP  7281

Range 7: 7318 to 7491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 38/58(66%) 0/58(0%) Minus/Plus
Query        2  CCTF*GSQIYHILEITSINFLTGGVTGTAQQE*LTVALNSPFPAQGYSGSLKTLCP*C  175
                CC F*GSQIY I   TSIN LT GVTGT Q+ *LTV  ++P PA GYS +L+ LCP*C
Subject   7318  CCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGYSANLRILCP*C  7491

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 7163 to 7381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 39/73(53%) 0/73(0%) Minus/Plus
Query       30  MPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIFG  248
                MP  QP +++K++ PL +GL +G+V+  L +S LP++GDNIH  PHGG Y DGT +I YCGPK+SFP+ G+ G
Subject   7163  MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG  7381

Range 2: 6962 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 17/36(47%) 0/36(0%) Minus/Plus
Query      337  VCLVSKEAVDLAAAHKSEFKLPCEVRGSTFNVVTLL  444
                V  V K   D    +  E++LPC+VRGSTF VVT +
Subject   6962  VICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 3: 7162 to 7380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 32/73(44%) 0/73(0%) Plus/Minus
Query       31  PNIPELGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNGVMVFAQLAGC*KGI  249
                P  P +GK   GPQ*+I +VPS * PP G * MLSP  G    +K   T P  +P   G   F +  GC +GI
Subject   7162  PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI  7380

Range 4: 6961 to 7065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      341  RVTTLKVEPRTSQGNLNSDLCAAARSTASLLTKHT  445
                +VTT KVEPRT QG+L S      +S+    T+ T
Subject   6961  KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMT  7065

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 6

Range 1: 7347 to 7559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 40/71(56%) 0/71(0%) Minus/Plus
Query       36  MPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGI  248
                MPF QP +++K++ P+ +G  + LVL  L +S LP  GDNIH  PHGG Y+DGT RI+YCGPK SFPSS +
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSL  7559

Range 2: 7148 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 17/39(44%) 0/39(0%) Minus/Plus
Query      328  VCLVSKEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSR  444
                +  + KE  D  A H  E+KLPC+VRG+TF+ VT +  +
Subject   7148  IICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 3: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 9/15(60%) 0/15(0%) Minus/Plus
Query      256  FYIAATRHRNKLILM  300
                +Y+A TRHR+KL+L+
Subject   7292  WYVALTRHRHKLVLV  7336

Range 4: 7340 to 7549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 33/70(47%) 0/70(0%) Plus/Minus
Query       46  LGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNGVMVFAQLAGC*KGILL  255
                LGK+ LGPQ*+IL+VPS * PP*G   MLSP  GK   +K   T     P   G  +     G  KGIL+
Subject   7340  LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILI  7549

Range 5: 7165 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 23/54(43%) 0/54(0%) Plus/Minus
Query      266  NLFLCLVAAI*NQCLSSGVGSLDFKRVTTLKVEPRTSQGNLNSDLCAAARSTAS  427
                NL LCLV+A      ++      + +VT  KV PRT QGNL S  C A +S+ S
Subject   7165  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTS  7326

Range 6: 7347 to 7550 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 25/68(37%) 0/68(0%) Plus/Minus
Query       45  AGKGLFRATVSYSCCAVPVTPPVRKLMDVISRIW*I*LPQKVQHKPNAQTNSQWSYGLCPIGRLLKRH  248
                A KG+FR  V+ S  +V +   +R++++VI+ +W*    Q   ++ N+ T S W   L  I RL KRH
Subject   7347  AWKGVFRTAVTDSLSSVLIVTTMRQIVNVITYLW*STPSQSE*NQSNSCTYSYWKNTLRVIRRLGKRH  7550

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 4

Range 1: 6875 to 7075 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 36/67(54%) 0/67(0%) Minus/Plus
Query       33  PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIF  233
                P +  + + P+ VGLG+G+V+  L +S LP  GDN+H  PHGG Y DGT RI+YCGP+ SFPSS +F
Subject   6875  PPDNTRVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLPHGGNYLDGTKRISYCGPRDSFPSSNLF  7075

Range 2: 6652 to 6756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 15/35(43%) 0/35(0%) Minus/Plus
Query      325  KEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSRD  429
                KE  DL   H +++K  C++RGSTF++VT + S +
Subject   6652  KEVFDLLDRHGADYKKDCQIRGSTFDIVTFITSSE  6756

Range 3: 6733 to 6828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/32(38%) 0/32(0%) Minus/Plus
Query      256  VVTLLKSRDPTPEDRHWFYIAATRHRNKLILM  351
                V  +  S    PEDR+  Y+  TRHR+ L ++
Subject   6733  VTFITSSESFEPEDRYKVYLCLTRHRSVLRIL  6828

Range 4: 6901 to 7062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 31/54(57%) 0/54(0%) Plus/Minus
Query       46  LGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNG  207
                LGK  LGPQ*+IL VPS * PP*G    LSP  G+ D +K   T P PKPT  G
Subject   6901  LGKLSLGPQ*LILFVPSK*FPP*GRLCTLSPTEGRVDLVKHQMTMPTPKPTAMG  7062

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 4

Range 1: 6840 to 7040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 37/67(55%) 0/67(0%) Minus/Plus
Query       33  PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIF  233
                P +  + + P+ +GLG+G+V+  L +S LP  GDNIH  PHGG Y DGT RI+YCGPK SFPSS +F
Subject   6840  PPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISYCGPKNSFPSSNLF  7040

Range 2: 6617 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 15/35(43%) 0/35(0%) Minus/Plus
Query      325  KEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSRD  429
                KE  DL   H +++K  C++RGSTF++VT + + D
Subject   6617  KEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD  6721

Range 3: 6731 to 6793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 10/21(48%) 0/21(0%) Minus/Plus
Query      256  PEDRHWFYIAATRHRNKLILM  318
                PEDR+  Y+  TRHR+ L ++
Subject   6731  PEDRYKVYLCLTRHRSILRIL  6793

Range 4: 6866 to 7027 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 27/54(50%) 0/54(0%) Plus/Minus
Query       46  LGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNG  207
                LGK   GPQ*+IL VPS * PP G  W+LSP  G  D ++   T+P P+P   G
Subject   6866  LGKLFFGPQ*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIG  7027

Nucleotide Sequence (490 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
490

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
320.4 1171.9 14% 6.628e-87 44% NC_001948
107.4 157.0 20% 9.221e-23 39% NC_006948
102.3 174.1 22% 1.218e-22 41% NC_009892
91.3 225.3 37% 9.881e-24 36% NC_009764
60.6 265.8 26% 4.405e-27 41% NC_014821

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 6860 to 7342 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.4 bits(693) 0.0 131/161(81%) 0/161(0%) Minus/Plus
Query        7  DVLFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*DAFSATCELGQNCYSIDNRLGHWLGAAFPKKVK  489
                DVLFSDPYQNIS+P+EAHFIKSKTCRFG NTCKYL SFGF V SD  D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*DAFSA CELG+N  SID+ LGHW  AAF ++VK
Subject   6860  DVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVK  7342

Range 2: 6859 to 7344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
256.3 bits(553) 0.0 116/162(72%) 0/162(0%) Plus/Minus
Query        5  NLTFLGNAAPSQCPSLLSME*QFWPNSQVAEKASHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPKDRRYLHVFLPNLQVFDFMK*ASLGTLIF*YGSENSTS  490
                +LT   NAA +QCPS LSME  F PNSQ AEKAS+CM+INF LCLVAAM*NQCLSS VGSLDF +VTT  V P TSQG+L SELCA A+STASLPK ISTPSTS+  G+P +T S  SL T KPK+ RYL VF PNLQVFD MK ASLG L+F YGSENSTS
Subject   6859  DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTS  7344

Range 3: 6860 to 7348 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.1 bits(439) 0.0 93/163(57%) 0/163(0%) Plus/Minus
Query        1  GKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRKFEI*IMRSCQINCLLAKAN*HTLNIQLKW*TCNHFIRPVTMHIKTKG*KVLTCIFAKPAGL*LYEVSLPWNTDILIWVRE*HV  489
                G+FDFLRKCST PMPKP VNGV V AQFAGC*KGI LHD Q LP+SC SNV+PV I+ G IS*FQ   ++K  TS  TR FE  ++R+ +I+CLL KA *H  NI  K    N F++ VT ++KT+G K+   I AKP   *L E+ L  N D+L+WVRE H+
Subject   6860  GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHI  7348

Range 4: 7104 to 7346 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 59/81(73%) 0/81(0%) Minus/Plus
Query        3  SNFLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNL  245
                SN+LV+ EV  L    +*NQEI+P  I TG TLL QD GR+* SCS+MPFQQPANWAKT+TPLT+GLGIGLVLHFLRKSNL
Subject   7104  SNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNL  7346

Range 5: 6864 to 7055 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 28/64(44%) 0/64(0%) Minus/Plus
Query      294  CYSLTHIKISVFQGRLTS*SQRPAGLAKIHVSTFYPLVLMCIVTGLMK*LQVHHLSWMLRVC*F  485
                C S TH K S F  R  S SQ+  GLA I  + F P VL   VT   K L    L  ML+ C*+
Subject   6864  CCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*Y  7055

Range 6: 7036 to 7278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 46/81(57%) 0/81(0%) Minus/Plus
Query       71  C*GCANLLWQGGS*FGSCA*FRFQTSL*GTRCYI*CCYLIEIKRSDL***ALVLHCCNKT*EEVDHHAVRCLFSNLRIGPK  313
                C*  AN+LW GGS    CA    Q +L*  R   *     EIKRS+   *ALVLHCC KT  E+D+HAVRCLFS+LRIG K
Subject   7036  C*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQK  7278

Range 7: 6865 to 6981 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 18/39(46%) 0/39(0%) Minus/Plus
Query      368  AIL*PISKYQCSKGGSLHKVKDLQVWQKYM*VPSILWF*  484
                A+L PI K+Q S  G+ H+VK+L VW++Y+ +  +L F*
Subject   6865  AVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF*  6981

Range 8: 7155 to 7343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 44/63(70%) 0/63(0%) Plus/Minus
Query        6  I*LS*EMQHQANAQAYCQWSNSFGPIRRLLKRHLTA**STSSYVLLQQCRTSAYHQRSDLLIS  194
                I*L  +MQH+ NAQA CQWS  F PIRRLLKRHLTA* S S  VL QQC+TSAY    DLLIS
Subject   7155  I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7343

Mint virus X, complete genome

Sequence ID: Length: 5914 Number of Matches: 2

Range 1: 4296 to 4673 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 52/126(41%) 0/126(0%) Minus/Plus
Query      112  DVLFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIM  489
                DV+F+DP Q+      AH+  S T RFG+ TC+ L  FG    S++ DEV  G  F  D EG +IC   EA  LA+ +  +   PCE  GATF VVT++        D    YIA TRH + L I+
Subject   4296  DVIFADPLQHRGPTLPAHYTSSITHRFGRATCELLSKFGITAESNKEDEVFFGWAFADDPEGAVICLDAEAQSLASWNGLEHLKPCEALGATFPVVTVISGTPLEEADAVDRYIALTRHTRLLRIL  4673

Range 2: 4430 to 4645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 28/72(39%) 0/72(0%) Plus/Minus
Query      140  VAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDL  355
                V+AM     S+    +    VTT NVAPR SQG   S     A+  AS  +Q++ PS S++   P  TSS L
Subject   4430  VSAMYRSTASASSRGVPEMTVTTGNVAPRASQGFKCSRPFQEARDCASASRQMTAPSGSSAKAHPKKTSSSL  4645

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 3

Range 1: 6773 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 41/99(41%) 0/99(0%) Minus/Plus
Query      193  DVLFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL  489
                D  FSDP+QN      AHF+   + RFG+NT   L S G+ V+S + DE+I  + F  ++EG +IC  K   D    ++ +++LPC+VRG+TF+VVT +
Subject   6773  DCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 2: 7109 to 7150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/14(64%) 0/14(0%) Minus/Plus
Query      112  YIAATRHRKKLIIM  153
                YIA TRH KK+ I+
Subject   7109  YIALTRHSKKIQIL  7150

Range 3: 6883 to 7065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 26/61(43%) 0/61(0%) Plus/Minus
Query      197  KVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPK  379
                KVTTS V PRT QGSL S+     KS+     Q++ PS+S       ++SS L+L T  P+
Subject   6883  KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR  7065

Coleus vein necrosis virus, complete genome

Sequence ID: Length: 8727 Number of Matches: 5

Range 1: 6320 to 6610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 42/97(43%) 0/97(0%) Minus/Plus
Query      193  LFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL  483
                +F DP Q  +      FI +KT RFG NTC  L  FGF + SD+ DEV+  S    +VEG ++  G EA  +   +   +K  CEVRG+TF+VVTL+
Subject   6320  IFGDPCQGTAPCIPPQFISTKTRRFGYNTCGLLQKFGFSIESDQEDEVVIQSSAVGEVEGEVLACGPEAELILTWYGYPYKKYCEVRGSTFEVVTLV  6610

Range 2: 6669 to 6803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 18/45(40%) 0/45(0%) Minus/Plus
Query        3  DIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNL  137
                DIG S* S + MP   P +  K++  +  G G+ LVL+ L +S L
Subject   6669  DIGAS*LSSTVMPLLPPPDNTKSILAIATGAGLALVLYTLTRSTL  6803

Range 3: 6355 to 6531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 21/59(36%) 0/59(0%) Plus/Minus
Query      272  STASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPKDRRYLHVFLPNLQVFDFMK*ASL  448
                ++AS P   ++PSTS +  + + TSS  SL    P      HV  PNL V   M *  +
Subject   6355  NSASGPHASTSPSTSPTADDCITTSSS*SLSIENPNFWSNPHVL*PNLLVLVEMN*GGI  6531

Range 4: 6650 to 6778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 16/43(37%) 0/43(0%) Plus/Minus
Query       28  STKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVE  156
                STK  P P+     +L    G   GI++ D+QL PMS  + V+
Subject   6650  STKANPAPVAIASMLLVLSGGGKSGITVDDNQLAPMSSKTGVK  6778

Range 5: 6568 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 13/23(57%) 0/23(0%) Plus/Minus
Query      167  SSEVGSLDFNKVTTSNVAPRTSQ  235
                SS +      +VTTSNV PRTSQ
Subject   6568  SSGIVEKSVTRVTTSNVDPRTSQ  6636

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 6

Range 1: 7130 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 22/45(49%) 0/45(0%) Minus/Plus
Query      184  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR  318
                ++ EG +IC  KE  D  A H+ ++KLPC+VRGATFD VT +  +
Subject   7130  VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 2: 6962 to 7129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 23/56(41%) 0/56(0%) Minus/Plus
Query      316  LFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFEL  483
                LFSDPYQN      AHFI   + RFG  T + L + G+++ S + D V   + F L
Subject   6962  LFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL  7129

Range 3: 7347 to 7448 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 16/34(47%) 0/34(0%) Minus/Plus
Query        3  MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNL  104
                MPF QP +++K+V P+ IG  + LVL  L +S L
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTL  7448

Range 4: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/15(53%) 0/15(0%) Minus/Plus
Query      112  FYIAATRHRKKLIIM  156
                +Y+A TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 5: 7126 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 30/67(45%) 0/67(0%) Plus/Minus
Query      122  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS  322
                N  LCLV+A      ++      + KVT S VAPRT QG+L S  C A KS+ S  +QI  PS S S
Subject   7126  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS  7326

Range 6: 7347 to 7421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 12/25(48%) 0/25(0%) Plus/Minus
Query       30  HQANAQAYCQWSNSFGPIRRLLKRH  104
                +Q+N+  Y  W N+   IRRL KRH
Subject   7347  NQSNSCTYSYWKNTLRVIRRLGKRH  7421

Nucleotide Sequence (783 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
79
158
237
316
395
474
553
632
711
783

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 10

Range 1: 3872 to 4651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
580.2 bits(1260) 0.0 239/260(92%) 0/260(0%) Minus/Plus
Query        4  KIGNGPQSIKVDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMTAAFAD  783
                KIGNGPQSIKVDELRKVKRSALD LS+NGSK TYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKVAKAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IR DAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRF+NPMF+SRLPC+FKKGSMTAAFAD
Subject   3872  KIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFAD  4651

Range 2: 3874 to 4653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
464.3 bits(1007) 0.0 209/260(80%) 0/260(0%) Plus/Minus
Query        2  *SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPASEMKASRRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVRPPSKHP*SFSARSKLGKYVVFDPFRESRSRAERLTFRSSSTFIL*GPLPI  781
                *SA AAV+EPFLK HG+L+SNIGF NL LS LYLY  PS SL+MSLCSAPK+A SF ESYVL* GSPASEMKAS RI  +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA ATL  SSISRSFLIE A+ARLGETKVTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPVRPPSKHP +FSARSKLGK V+ DPF E +SRA+RLTFR+SSTF+L*GPLPI
Subject   3874  *SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPI  4653

Range 3: 4301 to 4654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 64/118(54%) 0/118(0%) Plus/Minus
Query        1  LISKRGSHGTFFEVTW*S*IKHWIYEPPALQVVPI*LSFKKSQYVTLFSTQNGSIFLRIVCALTRITS**DESVTANNKET*INVTRGK*LNFIKDHAMTSL*ACNLSKENFEGNNIP  354
                +IS+ GSH   FEVTW S* +HW+++PPA  V+PI  + K+S+YVTL S QN  I LR++CALT ITS *+ES+T  NK+ *I+V+R K L+ IK+H + SL +CN SKEN +   IP
Subject   4301  IISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP  4654

Range 4: 3878 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.5 bits(261) 0.0 54/126(43%) 0/126(0%) Plus/Minus
Query      400  IHFQVLLD*IG*SPPR*NKSHKFPFRSLHEALV*ETLSSPKCTKYNCQFSLFDVGS*HSSKPRL*IIKFLVTYHTS*TSQQAPLKFFGPLKTWKICCF*PVQGK*VKS*TFNFSQLIHLYTLRPVT  777
                IHF+++ D*I *S    NK ++F  R  HE LV ETL SPKCTK++ QF   ++ S ++ KPR  I + L+TY+ S*   Q  L+ F PLK W++  F P+  K ++  + +  Q IH Y LR +T
Subject   3878  IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAIT  4255

Range 5: 4320 to 4652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 62/111(56%) 0/111(0%) Minus/Plus
Query        3  KFSLERLQA*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSH*LVILVKAHTILKKIEPFWVLNKVTY*DFLKESHIGTTWRAGGS*IQCLIQDYHVTSKKVP*LPRLLI  335
                +FSLE+LQ *RL   * LM+ S F L T IY  LL+ V LS H LVI VKAH   K+I  FW L++VTY D L+   IG T +AGG * QC  QD HVTSK+  *LP  LI
Subject   4320  RFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLI  4652

Range 6: 3889 to 4239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 49/117(42%) 0/117(0%) Minus/Plus
Query      416  SKYKGG*AAKS*TFSS*PTFPERVKNNIFSKF*AGRKTSGVLAGRSNWCDK*REI**FKALACWSVNFRHQTKRIDSCTWYIWGWKEFPIQELHEEI*REICDFCFT*AGSSQFNQE  766
                S++K G* A+         F E V NN+  K *AG K + + A   NW  K* E+ * K LA W + + +  K ID   WYIWGW+EF +QE HE++*  I + CF+    S+FNQ+
Subject   3889  SEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK  4239

Range 7: 4306 to 4641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 51/112(46%) 0/112(0%) Minus/Plus
Query       14  CCYLRSFP*KGYRPKGWSLRDL**SSAISPWLH*SMSPCYSP*RFHLTSW*SLSKHIRFSKR*SHFGC*TK*HIETS*RKVI*VQLGEPEVHKSNV*FKITM*LQKRFHDCR  349
                C     FP*K  R +GW L D **   +S W+H SM   Y+ * FH T W*S+SKHI  +K   +FG * +*H  T+* + +*V   + EV + NV  K  M LQK   DCR
Subject   4306  CSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCR  4641

Range 8: 3879 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 41/99(41%) 0/99(0%) Minus/Plus
Query      480  VTGLKV*RWMSCEKLNVQLLTYFP*TGQKQHIFQVLSGPKNFRGACWEV*LV**VTRNLMIQSLGLLECQLPTSNKEN*QLYLVHLGLERVSYTRAS*R  776
                V  L+ *+WM+C + +      F * G K    Q LSG K+ +  C   *L  *V R+ ++Q+LG L   L   ++ N*   LVHLGL RVS TR S*+
Subject   3879  VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*K  4175

Range 9: 4323 to 4652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 50/110(45%) 0/110(0%) Plus/Minus
Query        3  DQQTRQSWNLF*SYMVILNQTLDL*TSGSPSCTYMTFLQEVSICHFVQHPKWLYLFENRMCFDKDHQLVR*KRHGE*QGDIDQCNQGEIAELHQRSRNDQPLGL*PF*GK  332
                +Q+ RQS + F*S M +L +TL   TS     TY    Q V +CH  Q PK    F + MCFD DHQ V+*K H  *   ID+C Q E    HQ+S + QP  L  F*GK
Subject   4323  NQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GK  4652

Range 10: 3879 to 4160 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 41/94(44%) 0/94(0%) Plus/Minus
Query      495  CIGNSFQPQMYQVQLSILFV*CRKLTLQQAKALNH*ISRHLSHQLDLPASTPEVFRPAQNLENMLFLTRSGKVGQELNV*LFAAHPPLYFEARY  776
                C  NS QPQMYQ + SI   * +    Q+AK L+H* S HL  QL   A+    F+PAQ+L + LF T S K  +    *  A HP L  E  Y
Subject   3879  CTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHY  4160

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 3

Range 1: 3451 to 4173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 105/241(44%) 0/241(0%) Minus/Plus
Query       22  LRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSM  744
                L  V   +++LL   G+  TY P   RA +L   L GG TG IS   +ND       V  S    R L V+LGTFGAGKS L+K FM  ++G+ +T+VSPRR LA     D+++D   +     K++ + W V TFE FL +   ++ G  VI DEVQL+PPGY+DL L ++     I L GDPCQS YDS+KDR     E SDI ++LE K Y YN+ SRRF+N  ++ RLPC   +  +
Subject   3451  LTAVTEESVELLRGCGTLITYQPDQGRALRLAKNLHGGQTGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPCTLDESKL  4173

Range 2: 3840 to 4157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 43/106(41%) 0/106(0%) Plus/Minus
Query       38  KLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPASEMKASRRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ  355
                ++HG   S + F   RL  L LY   S  L +SL S  K+ LSF  S  L  GSP+ +M        R RS  PGG S TSS IT  P    +   R  SKV T Q
Subject   3840  RVHGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ  4157

Range 3: 3658 to 3762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 13/35(37%) 0/35(0%) Plus/Minus
Query      433  *SPPR*NKSHKFPFRSLHEALV*ETLSSPKCTKYN  537
                *+PPR +  +   F S+HE L *  L   K   Y+
Subject   3658  *TPPRAHVRYAPTFVSMHEFLK*SALPRSKSP*YH  3762

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 4

Range 1: 4360 to 4689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 58/110(53%) 0/110(0%) Minus/Plus
Query       19  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMT  348
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L +     I +AGDPCQS YDS  DR I    +SDI+R L G+SY++N+ S+RF NP+F  RLPCN  K  +T
Subject   4360  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLT  4689

Range 2: 3955 to 4299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 49/115(43%) 0/115(0%) Minus/Plus
Query      409  VDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL  753
                V +L +V  SA+  L++NG++  Y PS +RA  L      G TGV+        K   A +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3955  VSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4299

Range 3: 4404 to 4703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 45/100(45%) 0/100(0%) Plus/Minus
Query        5  SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPASEMKASRRITRRHRSM*PGGNS*TSSKITQ*PA  304
                S+++ V     KL G+L   IGF+NL L  L L   P R L MSL    K+  S   S  L  GSPA  M   R      RSM*PGGNS* SS  T *P+
Subject   4404  SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPAIIMFTFRFNPSMIRSM*PGGNS*ISSMTTV*PS  4703

Range 4: 4164 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 22/45(49%) 0/45(0%) Plus/Minus
Query      410  RSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNVPSTTVN  544
                +S  I+ A   LG+TKV  FP D  M  L R+LFP PNVP   +N
Subject   4164  KS*FIDSASDLLGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN  4298

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 6

Range 1: 4363 to 4692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 57/110(52%) 0/110(0%) Minus/Plus
Query       19  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMT  348
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++++  I +AGDPCQS YDS  DR I    +SDI+R+L G++Y++N+ S+RF NP+F  RLPCN  K  +T
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLT  4692

Range 2: 4153 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      409  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL  558
                +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4153  VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 3: 3958 to 4095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 19/46(41%) 0/46(0%) Minus/Plus
Query      616  VDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVI  753
                V +L +V  SA+  L++NG++  Y PS +RA  L   L  G TGV+
Subject   3958  VSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL  4095

Range 4: 4161 to 4301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 23/47(49%) 0/47(0%) Plus/Minus
Query      410  RSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  550
                +S L++ AR  LGETKV  FP D  M  L R+L P P VP    N L
Subject   4161  KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL  4301

Range 5: 4506 to 4706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 29/67(43%) 0/67(0%) Plus/Minus
Query        5  SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPA  205
                S+++ V     KLHG+L +  GF+N  L  L L   P   L MSL    K+ LS   S  L*QGSPA
Subject   4506  SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA  4706

Range 6: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 15/35(43%) 0/35(0%) Plus/Minus
Query      245  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  349
                +S+ PGG S* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 6

Range 1: 4359 to 4688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.1 bits(319) 0.0 57/110(52%) 0/110(0%) Minus/Plus
Query       19  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMT  348
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G+SY++N+ S+RF NP+F  RLPCN  K  +T
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLT  4688

Range 2: 4149 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      409  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL  558
                + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4149  VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 3: 3954 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 18/46(39%) 0/46(0%) Minus/Plus
Query      616  VDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVI  753
                V +L +V  SA+  L++NG++  Y PS +RA  L      G TGV+
Subject   3954  VSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL  4091

Range 4: 4502 to 4702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 32/67(48%) 0/67(0%) Plus/Minus
Query        5  SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPA  205
                S+++ V    L+L GNL  N GF NL L  L L   P R L +SL    KM LS  +S  L*QGSPA
Subject   4502  SSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA  4702

Range 5: 4157 to 4297 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 22/47(47%) 0/47(0%) Plus/Minus
Query      410  RSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  550
                +S L++ A   LGETKV  FP D  M  L ++LFP PNVP   ++ L
Subject   4157  KS*LMDSASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL  4297

Range 6: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      245  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  349
                +S+*PGG S* SS  T *P+          SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Nucleotide Sequence (986 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
99
198
297
396
495
594
693
792
891
986

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
424.5 1268.0 18% 7.935e-118 34% NC_001948
59.3 59.3 9% 6.813e-08 26% NC_009892
58.8 58.8 9% 9.361e-08 26% NC_018714
57.0 57.0 9% 3.335e-07 26% NC_014821
55.1 55.1 9% 1.188e-06 33% NC_009383

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 10

Range 1: 1175 to 1978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
424.5 bits(920) 0.0 186/268(69%) 0/268(0%) Plus/Plus
Query        2  ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSWFGLGNAHFNRQRAPYSLGISHWLNSPFSVEHKFAGAINHQILHVALSLVPLSNDPFFKLTPREVDSALSSVRMALGITGQSKLFGFLVNDTLINEMQRRYKLRLAKHLKSLTWYFHFCGCQWXXXXXXXXXXXXGDRKTSFADLDCNVAQIYRLVSAQVTAPGVLLGLTKVYARYSN  805
                I+CGRSGSLLMPNISKLVISF CRMMPNALARLSSSFRE SLDSFVY+LEPFNFSVNL+D+TPDFFEHLFLFSCLNELIEED+EEVMD+SWFGLG+  FNRQRAP+ LG S+WLNS FSVEHKF+G IN QI+ V LSL+P S+DP F+ +  EV+ ALS V+ AL  TGQSKLF FLV+D  + E++  YK+ L KH+K+LT  F+ CG QWFLL +R NL+FL DR +SFADLDC V ++Y+LV++Q   P  LL LTKV+ R S+
Subject   1175  INCGRSGSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTINSQIMQVILSLIPFSDDPTFRPSSTEVNLALSEVKAALEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSD  1978

Range 2: 1174 to 1959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
267.3 bits(577) 0.0 146/262(56%) 0/262(0%) Minus/Minus
Query        1  TLVKPNKTPGAVT*AETKR*I*ATLQSRSAKEVFRSPRNLRLTLRFKRNH*QPQKWKYQVSDFKCLASLNLYLLCISFMRVSFTKKPKSLDCPVIPRAILTLERAESTSLGVSLKKGSFDKGTKDRATCRIWWLMAPANLCSTENGELSQCDIPSEYGAL*RLKCALPSPNHELXXXXXXXXXXXSLRQENKNRCSKKSGVTSIKLTEKLKGSRA*TNESSEVSRKLEDNLAKALGIIRHKNDITSFEILGINREPLRPQLI  786
                TLVK ++  G++    T  *   T QSRSAK+   S RNLRL L  +RNH +PQ+ K  V  F CL    L  L  S +  S TK   + DCPV   A LT + A  TS+   LK GS + G KD+ TC I  LM P NLCSTEN ELSQ + P + GAL RL C  PSPN ELS+TSS SSSI+S RQE +N+CSKKSGV S KLTEKLKGS   TNESSE SRKLE++LA A GIIR KND+T+ E+LGI++EPL PQ I
Subject   1174  TLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASSAALTSDSARLTSVEDGLKVGSSENGIKDKITCMI*ELMVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKEPLLPQFI  1959

Range 3: 1181 to 1645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 71/155(46%) 0/155(0%) Minus/Minus
Query        8  RINLPRS*LKKGII*QRDQGQSNMQNLVVDGTCKLMLNREWRVKPVRYP**IWSPLTIKVRIAKSKP*TIHNLLNVLFNQLIEAGE*K*VLKEIRGHIYQVN*KIERLKSVDKRVK*SFAET*RQPGQGIRHHPTQK*YHQL*NIGHQ*GTTPPT  472
                ++NL R   K GII + DQ  +N+ +L +DG  KL+LN ++ V+P+  P     PL I++ + KSKP  +H+L NVL +QLI AGE K*+LKEIR +I+ +N KI+ LK V K +  + ++  R+PG+ I HHP ++*Y QL N+GH+   TPPT
Subject   1181  KVNLCRRWPKSGIIRKWDQR*NNLHDLRIDGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRATPPT  1645

Range 4: 1682 to 1960 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 32/93(34%) 0/93(0%) Minus/Minus
Query      509  DLSQTQQDSRGCDLS*NQTINLSNITIKVSKRGLSIAKKSEVNSSIQEKPLTTTKMEIPSK*FQVLGKSQLIPSLHFIYEGIIH*KAKKFRLP  787
                D  Q +Q  R   L   + IN  N+TIK+SK    + +K EV    +E+PL  T+++  S+ F VL K+ LI + +  +  ++H K ++F LP
Subject   1682  DFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LP  1960

Range 5: 1179 to 1646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 68/156(44%) 0/156(0%) Minus/Minus
Query        6  QNQPP*ELA*KRDHLTKGPRTEQHAEFGG*WHLQTYAQQRMES*ASAISLVNMEPSDD*SAHCQVQTMNYP*PPQCPLQSAH*GRRIKIGAQRNQGSHLSS*LKN*KAQERRQTSQVKFRGNLKTTWPRH*ASSDTKMISPALKYWASIGNHSAHN  473
                Q  P *++A*K DH   G + +  A F  *W L+T AQ ++ S*A+  +     PS D*    QVQT N P*P Q P +S H GRR +I AQRNQ  +  +* KN*+AQ   Q +      + K  W  H ASS  +MI P  K WA   +HS+HN
Subject   1179  QG*PL*KMA*KWDHQKMGSKIK*LA*FEN*WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINAQRNQELYPLN*RKN*RAQVSTQMNLANTLES*KRAWRVHLASSGKRMI*PT*KCWA*AKSHSSHN  1646

Range 6: 1794 to 1922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 17/43(40%) 0/43(0%) Minus/Minus
Query      621  PELKPNDKFEQHYNQGQQKRSFDRQEI*G*LFDSRETIDNHKN  749
                P +   DK    +NQ QQ+      EI*G  F    TI  HKN
Subject   1794  PVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN  1922

Range 7: 1332 to 1613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 46/94(49%) 0/94(0%) Plus/Plus
Query      159  IFQLT**M*PLISLSTYFYSPASMS*LKRTLRRLWIVHGLDLAMRTLIVRGLHIH*GYRTGLTLHSLLSISLQVPSTTKFCMLLCPWSLCQMIP  440
                IF L * +* LISLS YF SPA MS* +RTL+R W + GLDL     I RG     G   G T +  LS S Q PS  K C L    S   MIP
Subject   1332  IFPLI*WI*LLISLSIYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARGPRSFLGLHIGSTPNFQLSTSFQAPSILKSCKLFYL*SHFLMIP  1613

Range 8: 1179 to 1277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 18/33(55%) 0/33(0%) Plus/Plus
Query        6  VVGGVVPY*CPIFQSW*YHFCVG*CLMPWPGCL  104
                +VGGV    CP F SW YH   G*C M  PG L
Subject   1179  IVGGVALCLCPTFLSWSYHSFAG*CQMHSPGSL  1277

Range 9: 1180 to 1497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 47/106(44%) 0/106(0%) Plus/Plus
Query        7  LWAEWFPIDAQYFKAGDIIFVSDDA*CLGQVVFKFPRNFT*LVCLRS*AFQFFS*LDRCDP*FL*APIFILLPQ*AD*RGH*GGYG*FMVWTWQCAL*SSEGSIFT  324
                LW EW    AQ+F  G II + DDA C  Q +F   R F   +C+ +*A  FF *    + *FL*A I +LLP+* D  G * G+G F+VWTW   + S EG + +
Subject   1180  LWEEWLFAYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVLS  1497

Range 10: 1764 to 1964 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 26/67(39%) 0/67(0%) Plus/Plus
Query      591  ST*NHLLGISIFVVVNGFS*IEELTSDFLAIERPLLLTLIVMLLKFIVWFQLRSQPLESCWV*LRSM  791
                ST*   L   I V  NG S  +  TS+F       LL LIV L KFI     R   L  C  * +S+
Subject   1764  ST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSL  1964

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 1181 to 1453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 24/91(26%) 0/91(0%) Plus/Plus
Query        2  ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  274
                ++C    + L+PN+ KL+ +F   + P+++AR    F++ SLD+F+  +E FNFSV    ++  + + +       ++   DI+ +    W
Subject   1181  LNCETVNTKLLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW  1453

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 1177 to 1449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 24/91(26%) 0/91(0%) Plus/Plus
Query        2  ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  274
                + C    + ++P++ ++V  F  ++ PN ++R     ++  LD+F+  LE FNFS+N  D++ ++ + L   +     I+ ++EE   S+W
Subject   1177  LKCETLNTNMLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW  1449

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 1

Range 1: 1177 to 1449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 24/91(26%) 0/91(0%) Plus/Plus
Query        2  ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  274
                + C    + ++P++ ++V  F  ++ PN +AR     ++  LD+F+  LE F+F V   ++T D+ + L   +      + D++E  DS+W
Subject   1177  LKCDTLNTNMLPDMKRIVQGFFLKLFPNPIARNFKVVQQLHLDNFIETLEDFSFCVPTEELTLDWKDDLEFVNLTFGETDFDLDESFDSTW  1449

Phlox virus S, complete genome

Sequence ID: Length: 8590 Number of Matches: 1

Range 1: 1190 to 1441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 28/84(33%) 0/84(0%) Plus/Plus
Query       23  SLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW  274
                +L+ P + K  +      MP+ LA   SS  E SLD FV  +EPF F V L+DV  ++  +  LFS   E    D+ ++++  +
Subject   1190  TLIKPEVIKQFLGRWLGKMPHVLAVRFSSVAEVSLDEFVSQMEPFTFQVKLVDVDWNYHHNWDLFSKAEEDYGVDVCDLLNEGF  1441

Nucleotide Sequence (2651 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
266
532
798
1064
1330
1596
1862
2128
2394
2651

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 19

Range 1: 2927 to 5137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1635.5 bits(3563) 0.0 669/737(91%) 0/737(0%) Plus/Plus
Query        3  QCDRVVFATTGAGLSKLLDVPRSKKQSILVLEGALAMDTSYGPKILGSFEVFKGDFNIKKIEDGSIFVISYRAPVRSPGKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESIADPALSTQTVLKQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDDGCKVAKAGKSKREGWDVVTFEVFLRKIENLKAGHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  2213
                QCDRVVFATTG GLSK+L++PRSKKQSILVLEGAL+++T YGPK+LGSFEVFKGDF+IKK+E+GSIFVI+Y+AP+RS G+LRVH +ECSFSGS+EVLLGCQIEA ADYDIDDFN FSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESE +  P LS   + KQL +NAYAENEMIALFCIRHHVR I+ITPEYEVSWKFG+ EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINP G++SALFDITNEHIRHVEKIGNGPQSIKVDELR+VKRSALD LSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWLSGIST++IK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDD CKVAKAG+SK+EGWDVVTFEVFLRK+  LKAGHCVIFDEVQLFPPGY+DLCLL IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSK  LDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITG+ VE FLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQ
Subject   2927  QCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQ  5137

Range 2: 2926 to 5133 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1202.5 bits(2618) 0.0 559/736(76%) 0/736(0%) Minus/Minus
Query        2  PKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRKW*SGFPAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETRMASKEVLDRARRKSCIL*KMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSILYL*DLPSSNLNMSLCSAPSIARSFWESYVL*QGSPASEMKASLLMVNRQRXXXXXXXXXXXXKITQWPAFRFSIFLRNTSKVTTSQPSLFDLPAFATLQPSSISRSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTSLSSSTFMLCGPLPIFSTCLICSLVMSNKADMRPLGLITSISPLMSHLAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHKGHSLSPNFQLTSYSGVMMISLT*CLMQNKAIISFSA*ALSPSCFKTVWVDRAGSAMDSLSTNERMPAFKASPSVLNKKPTECQKQLPSPGTENLLKXXXXXXXXXSI*QPSSTSLDPEKEHSVLWTLNLPGDLTGAL*DITNMEPSSIFLMLKSPLNTSKDPKIFGP*LVSIASAPSRTSIDCFLLLGTSSNLDKPAPVVAKTTRSH*  2209
                P+KS+TF+ GSP +FSS TPSF PMLTLKPLKKLGSPGSKS +TFSPL AV+KW* G PAKCERK STL PVMFTKSKL LKRD+AV+H RSSV  ESC+++IPP LKF+PVDSPNVSVSCFIPK*D TIFFSSKLET+ ASK   D ARRKSCIL K+A*SA AAV+EPFLK*HGSLDSNIGFTNL LS+LYL  LPSS+L+MSLCSAP IARSF ESYVL* GSPASEMKASL ++++ RS  PGG + TSSKITQWPAF  + FLR TSKVTTS PS FDLPA ATLQ SSISRSFLIE A+A LGETKVTNLPSDLFMKLLY+KL PAP VPSTTVNS  LI  VDIPES G  SLNFSSLITPV+PPSKHPC+FSA SKLGK*VI DPFIER+SRADR T  +SSTFML GPLPIFSTCL+CSLVMSN A++ P GLITSISP +SHLAQMS ASKASA+YIM RPPP  +SSK+* V GLHR*  TSTSRLPSAEA+AVIMQPF+GA G K*FD + +IPH+GHS SPNFQLTSYSGV+ I LT C MQN AIISFSA*A S +C +    +R+G    SLST +R+PAF+ASPSVL+KKPTECQKQLPSPGTE +LKSS+S*SA ASI QPS+TSLDPE EHS L TLNLP DL GAL  IT +EPSSIFLM KSPL TSKDP+ FGP* VS+  APSRT IDCFLL G S  LD+P PVVA TT SH*
Subject   2926  PRKSITFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMTFSPLLAVKKW*RGLPAKCERKLSTLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVSCFIPK*DWTIFFSSKLETKTASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH*  5133

Range 3: 5189 to 5575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.0 bits(620) 0.0 116/129(90%) 0/129(0%) Plus/Plus
Query     2265  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVQE  2651
                WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ + HEAVQE
Subject   5189  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQE  5575

Range 4: 5188 to 5574 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 96/129(74%) 0/129(0%) Minus/Minus
Query     2264  SCTASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLNH  2650
                SCTAS   + L LAF+G L+RK S+KNFPYG ARL+ AAST G EN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC*V+S*P  TSR SF AI PTHLALVDSRLL G+WVLNH
Subject   5188  SCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH  5574

Range 5: 2927 to 5128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
736.5 bits(1601) 0.0 357/734(49%) 0/734(0%) Minus/Minus
Query        3  EKHDL*PRITTKLFLSHSFISPNANVEAIKEVGLTGKQVPYHILPTLRRQEVVKWFPSKM*EETLHAYTSNVYQVQIVTKA**GR*PPTIISME*VM*N*NPTMFEVQPR*FTKC*C*LLHTKVRLHNFLFLKA*NQNGI*GGLRPSQKEVMHIVKNGIVSERCSHGALLKMTWQPRLKHWIHKPPALNIIPVGLALK*SQYVTLLSP*YRAVLLGVICALTGVTSK*NESVTSYGQ*TKVNVARRKKLNLIKNHTMACL*IFNLSEKYFKGHNVPTFSL*FACLCHFATIIHFQVFFN*IS*SPPG*NKGHELTFRPLHEALVQKAFACSKSSKHNCQFPRFDI*S*YP*EPWLGIIKFLITYNTS*AS*QTSLQLFSPLKAWKVSYLRSIH*KEVKSRSFHFSQLIHLYALRAIANLLNMSYMFIGYVK*S*HASARINNLDFSINVTLGTNVECFEGLSEVHHVQATTLAQFFKDVICGRSAQIVKDIHLTSAERRGNSGYHAAIQWGTGLKMI*LQAQNST*RPLTISKFPTYLILWGDDDQPHMMPNAE*GYHLVLCISIVTKLLQNSLG*QSWICNGFTFNK*TYASFQSKPVCAQQETH*VPKAVTITRHRKFVKVINVIISRGLNLTTK*YFSRP*KGTFRPVDSQFARRSHRSPVRYYKYGAIFNFLNVEVPFEYLKRSQNLWSIAGIHCKCTFKD*Y*LLLAPRHI*QLR*ACTSCCKDNSVTL  2204
                EKH+ *P +TT L L ++FI  NANV+A +EV LT +Q+ Y ILPT    ++V+ F SK+ E+T H  T +V+Q+QIV +A *   PP II ++ +M*  N  +FE+QP *FTKC C L H+KV L     LK  NQNGI G   P Q++VMHI+++ I+SE  SH AL ++TWQ   +HW+HKPPA  +IP+  ALK S+YVTLLS     +LL VICALT +TSK*NES+T+Y +   ++V+RRK+L+LIKNHT+A L   N S++  K + +P F L*  C  +FA IIHF++ F+*I *S  G NKG+E T RP HE LVQ+     K +KH+ QFP  +I S Y  +P   I + LITYN S*A *QTSLQLFSPLKAW+V Y R IH*KE++  S    Q IH YALRAI   LNM Y+ I YVK   + + RIN+ + SI +T   NV+  +  S +HHV+A +L +  K++I   S QI+  I+ T ++   N   HA IQWG  L++I* +A+NST* PLT  +FPT  I W D  +P+++PNAE*  HL+L ISI+ +L +N  G*+ W     T ++ +      K + A+ +T+ +PKA+ ITRHR+ VK+IN+IIS  LNL    Y     K  F  V+ Q A  S+   VRYYK     + LNV+VPFE  KR Q+ W+I   +   TFK+  *LL APRH * LR*  T CCK N VTL
Subject   2927  EKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISYDILPTFGC*KMVEGFASKVREKTFHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECELFHSKVGLDYLFLLKTGNQNGIQGTF*PRQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFYG*GTFKNQN*LLFAPRHF*NLR*TRTCCCKHNPVTL  5128

Range 6: 5180 to 5572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 77/131(59%) 0/131(0%) Minus/Minus
Query     2256  LYGFMHQVSIVACIQWNLRKESV**ELPVWLCAPQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLI  2648
                LY FM    I+   QW+   E +**E P+W   PQF SFNL LRK  T  DSHEEGY I++FMPW+ AFK  T +AQLL SSTPM IKELLS FITT+H  +  Q H ++PPGP * QIT  D+GFKPF I
Subject   5180  LYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI  5572

Range 7: 3388 to 5127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
482.6 bits(1047) 0.0 266/580(46%) 0/580(0%) Plus/Plus
Query      464  RSSSVNPNCFEATW*QCLCRERDDSLILH*ASCEADHHHPRV*GKLEIWR**VAFMWNFVLAIKSFSTLCPIEWLHDNRYCLCARQT*GGCP*LSVQTFHKSHL*RIVPRWWPEHDVPR*GLRSIRHLCQV*H*WRNRGY*S*RTHVSFI*HNQ*TYKTC*EDWQWPAEHKGG*AERSETICS*PPFNEWIEDNLLSKL*EG*KAAGMFARRLNWCYK**EI**FQAMALRDINFKYQISGIDSCAWNFWSRQKLSVQELHEEV*R*VRDLCFTQEGSS*FN*KRPGNG*WLQSGKGRQIKERRLGRCDL*SISQKD*KSKGRPLCDF**GSAFSSWLR*PLSIDHKK*RFHFTCW*PLSKHI*LPKGPRDTRG*AK*HIEIT*GQVLQV*Y*EPEVCESNV*V*AAMSF*EGLHDCSVR*LCHFSQYA*LPSGSV*DLLRCHSGFKL*GKENCAVLLWYEATNTNIW*INGAELQTWWDFNFT*LIPY**S*VVNGPITL*SQFGLGKHYWCKRGGFPLTFCWETTLPLPDGEEWGECDKGLASR*AQLL*WLQR*HWAK*RSARGKALW*SLAKGHAF  2203
                +S S +P+ F     +CLCRE DD +ILH A  +A   H R+*  LEI   *VA MWN +  IKS  T+ P EWLHD+ +C    + *  C  LSV T H S+ *  +    P HDV  *    + HL  +*+ WR+   *S   +   +*HN * +K C*E+  WP+EHK G*    + I    PFNEW+ +NLL KL* G*K A MFAR  NW YK**E+ * + +A   I + Y   GID  AW  W  ++  VQE HE+V* *+R+LCF+Q   S FN K   NG* LQS   R +KE R+G  + *    K  + +G PLCDF**G   SSW+   +   +  * FHFTCW* +SKHI*L KG  +   *A+*H    *GQ + V*+ + EVCE NV +  AMS  +GL DC  R*LC+   YA*L  G V   L C  GF+ *G+++  VLLW E  +T+IW*IN  E Q W + + T* + + *S V    I+L  QFG G+H+  + G F L  CW+T LP  + ++WGEC    A R*A LL WL R*HW +*R   G+ +W* + K +AF
Subject   3388  KSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRSLGCRFGFQF*GEKDSPVLLWNETAHTHIW*INWVEFQKWGNSHIT*FLSHR*SAVAYCFISLQPQFGFGEHHRSEGGKFSLALCWQTPLPFFNSQKWGECHTRFAPR*A*LLQWL*R*HWKE*RC*GGEVMW*PMVKSYAF  5127

Range 8: 5173 to 5514 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 63/114(55%) 0/114(0%) Plus/Plus
Query     2249  MLE*GMV*NPYPIK*SGINKGQVGWKDGIEGTP*SEMWL*NDSTVL**T*VWKKRAIEQRV*KI*KHISKA*R*RFGNLPHGCQETSKVF*ASS*SCKIEARKAIREVLTRHFP  2590
                ML+* MV*NP+P++*SG+N+GQVG  +G+E      +WL*NDST+L** * W   A EQ +*++*KH+ KA*R  F NLPHGC + S++F A  *SC+ EA + I E+L R FP
Subject   5173  MLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFP  5514

Range 9: 2926 to 3279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 56/118(47%) 0/118(0%) Plus/Plus
Query        2  SV*PSCLCNNWCRLI*VARCA*EQEAINTSP*RCTCNGYQLWTKDFGIF*GIQRGLQH*EN*RWLHICNILQGSCEISWQIESPQDGMFLFRV*RSTTWLSN*GLC*L*H**L*QIFC  355
                SV*  C+CNN    I*  R A EQ+AIN   *RC  +  +LW+K  G+F*  QRGL H*E+    + CN +QG   I WQ+E  Q  M +FR+ R    L +*G+C*L*+** *   C
Subject   2926  SV*QGCVCNNRSWSI*GFRNASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLC  3279

Range 10: 3903 to 5573 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
530.3 bits(1151) 0.0 289/557(52%) 0/557(0%) Plus/Plus
Query      979  WMS*EK*NDLLLTSFQ*MDRR*LTFQALRGLKSCRDVC*EA*LVL*VMRNLMIPSHGSQGYQLQISNLGN*QLCLELLEQAKAFCTRAS*RGLKVSS*PLFHPGGL*LIQLKKTWKWMMVAKWQRQANQREKVGTL*PLKYFSERLKI*RQAIV*FLMRFSFFLLATLTFVY*P*EVTLSFHLLVTPVKAHMTPKRTARY*GLSKVTY*DYLRASPTGIILRAGGL*IQCLSLGCHVILRRAP*LQRSLTMPFFTICMTSFWLGLRPP*MPFWFQALRKRKLCSLTLV*SN*H*HLVNQRG*TSNMVGF*FHMTHSILMIVGG*RPYHALVTIWTW*TLLV*AWRVSSHILLGNHFTTS*RRRVGRM**GTCFPVSPTSLMASTLALGEMKECERKSFVVILG*RSCFS*AKMRIARLRKLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK*DVVMKRLNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWLSGNV*SFLSLKLKLQN*GAQSHTGSSY*TLSFLRFH*MQATMLT*CMKPYK  2649
                WM+  + +D    SFQ*M  +* T QAL GLKSC+DVC* A*L L*VMR+ ++ + G   Y L I + GN*  CL  L   +  CTR S*+GL+V+S*PLF P  L* IQ K   KWM+ AK  +Q  QR K G  * L++  E+L+ *R A V*FLMR S FLL T  +      V LSFHLLV  VKAHMT KR  ++  LS+VTY D LRA   GI  +AGGL* QC +  CHV  +RA *L  SL M    ICMT  W G + P MPFWF  LR+++  S TL *++ H HLVNQ G* S M  F +HM     MI GG   Y A  TIW W*T  V* W+V S  LL N  T  *+ +VGRM    C  VS TS +A TLAL  MK   R+S+VV  G*+ CFS  KMRI +L++ S NA+M+NGLKP S *VIW+Q GPGG  +W *++  +  VVMK LN+SLM+IGVE  SN*A  V+ LKA+ QGIK  I+*PSSWLS +V +F S +LKL N*G  +H G+SY* LS+ + H*    + +  MK Y+
Subject   3903  WMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVPWMPFWFPVLRRKR*SSPTLE*NSSHSHLVNQLG*ISKMGEFSYHMIPFTQMIGGGLLLYLASATIWIW*TSQV*GWKVFSRTLLANPSTIF*QPKVGRMSYEICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMKRYR  5573

Range 11: 3162 to 3608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 67/149(45%) 0/149(0%) Plus/Plus
Query      238  AN*ESTGRNVPFQGLEKYYLVVKLRPLLIMTLMTLTNFLCLVMVTAFGTQWVSC*AQTGLL*KLAYVHLLKVNPLQIQLCQPKLF*SNLVTMLMQRTR**PYSALGIM*G*SSSPQSMR*VGNLEIVSGLYVEFCACNQIIFNPVPH*M  684
                A *  T +N  F   ++Y    +LR +LIM LM LT  LCLVM  AFG   V   A   L *+  +    +V+   +Q+ QP+ F +N   MLM R R*  YSA G  *G   S Q+M+ VGN   VSG YVEF A NQI  N  PH*M
Subject   3162  AG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*M  3608

Range 12: 2925 to 3125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 34/67(51%) 0/67(0%) Plus/Plus
Query        1  VSVTELSLQQLVQAYLSC*MCLGARSNQY*SLKVHLQWIPAMDQRFWDLLRYSKGTSTLRKLKMAPY  201
                VSVT L LQQ V  YL  * CLGA+SNQ+  LKV       M Q+ W LL++SKGT TLR+ +   +
Subject   2925  VSVTGLCLQQQVLVYLRF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQF  3125

Range 13: 3648 to 3812 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 19/55(35%) 0/55(0%) Plus/Plus
Query      724  VRWMSLTICADLPQITSLKNCAKVVA*T*CTSLRPSKHSTFVPSVTLMEKSRLLI  888
                V+ M   IC D   I  L++  +  A T*C  L+  +  TF  +V  ME+ + LI
Subject   3648  VKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LI  3812

Range 14: 5025 to 5513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 91/163(56%) 0/163(0%) Minus/Minus
Query     2101  GKCLVRTSRMALRASILQLQLEA*KTLDVS*QP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVESFHNHISLHGVPSMPSFQPTWPLLIPDYLMGYGF*TIPHSSIQTQFPQPRNPHLGLRKA*PLAKDHHKAFPLALLHFAQC*R*SH*RSWAH  2589
                GK L+R S M   AS+ QLQ  A K  D   QP*GRL N +LYAL  CFQ  H  CS+A  FH Y HQR VESFHNH +     S P + PTWP L PDY  G GF*TI H SI T   Q  NPHL   KA* L   HH   P   LH  QC*R*SH*RS AH
Subject   5025  GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AH  5513

Range 15: 4425 to 4964 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 87/180(48%) 0/180(0%) Minus/Minus
Query     1501  VSQQNVRGNPPRLHQ*CLPSPNCD*SVIGPLTTYDHQYGMSHVKLKSHHV*SSAPLIHQMLVLVASYQSKTAQFSFPQSLKPEWHLRRS*TEPEGSHAYCEKWHSQRTLQSWSPS*NDMAA*TQTLDSQTSGSQYYTCRTCPQVISICHFAQPLVSRGPFGSHMCFDRGHQQVK*KRHFL  2040
                V QQ+ R N P    *C P+PNC *S I    T DH    +HV  +  H *+S  LIHQM V   S+QS+T     PQ+ KP+ H R   T P  SHAY  + H+QR  QS SP *+DMA   +TL SQTS    YT   CPQ + +CH AQ      PF SHMCFD  HQQVK*K H++
Subject   4425  VCQQSARENFPPSDL*CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AVSFQSRTGLSFSPQNWKPKRHPRDLLTSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV  4964

Range 16: 3375 to 4016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 92/214(43%) 0/214(0%) Minus/Minus
Query      451  ANIPAAFQPSQSLESKLSSIHSLKGGQEQIVSLLSAHPPLCSAGHCQSSQHVLYVHWLCQIKLTCVR*D**PRFLH*CHTWHKCRMLRRPQRGTSCSGHHLGTILQRCDLWKVCTDS*GHPPHVCRAQRQ*RLSCSHSMGHRVENDLIASTKFHIKATHYLQISNLPHTLG***SASHDA*CRIRLSSRSLHKHCHQVASKQFGLTELDLQWIH  1092
                ANI A FQP+QSL S+L   HSLKG + +I    + HP LCS GH   SQH L  H LCQ        D*  + LH  H   KC+  ++ Q  TSC G       Q+ D   V TD+  H  H  +  +Q   SC+HS+G  V +DLI   +FHI ATH  +ISN  H L *   A   A CRI  SS S HKH   +  K  GL +LDL   H
Subject   3375  ANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAH  4016

Range 17: 2925 to 3341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 63/139(45%) 0/139(0%) Minus/Minus
Query        1  QARLCSTRNPLSAKSSYHHQAQKIC*SHQCHNQQRPQFDNQVVLL*TLKRNIPSCGLSICQEISQEPCKILQIWSHLQFS*C*SPL*IPQKIPKSLVHSWYPLQVHLQGLVLIASCS*AHLAT*ISLHQLLQRQLGHTD  417
                Q   C  +N  +AKS+ HHQAQ+ C*+HQ HNQ  PQ  +  + L   K +I +C  S CQ I   PC +LQ  +    S*C SPL*  QK P  L H+ +    HLQ   LIA CS A L  *I    LLQ Q  HTD
Subject   2925  QVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQEPKLIAFCSEAFLKP*IDQDLLLQTQPCHTD  3341

Range 18: 4095 to 4259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 29/55(53%) 0/55(0%) Minus/Minus
Query     1171  HHPFPGLF*LN*LEPSWVKQRSRTYLQTXXXXSCTESFCLLQKFQAQLSIPEI*Y  1335
                +HPF   F*LN L+  W KQR R Y QT S*+SCT +    Q +QA+ SIP  *Y
Subject   4095  YHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*Y  4259

Range 19: 4329 to 4397 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 14/23(61%) 0/23(0%) Minus/Minus
Query     1405  QEEKAEPHQKSHNGLPLDFQSF*  1473
                QEE   PHQKSH+G P   Q F*
Subject   4329  QEETTGPHQKSHSGQPSILQLF*  4397

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 18

Range 1: 3471 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
256.7 bits(554) 0.0 114/276(41%) 0/276(0%) Plus/Plus
Query      495  KQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL  1322
                KQL  N +AE E +A FC  + +RL ++    E +W F   E      L  Q NHF+PC P+NGC+I AI+SAL RREVDVL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N +GR+ A F +  EH+ H+  +     S  V +L  V  SA+  L++NG+++ Y PS +RA  L      G TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3471  KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 2: 5238 to 5618 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 80/127(63%) 0/127(0%) Plus/Plus
Query     2265  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAV  2645
                WFKTHIP+ +LE+ RA+WV K+  +E RE R G  TT+QF D+H   R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VPLN+SH+  +M EAV
Subject   5238  WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAV  5618

Range 3: 4764 to 5186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.0 bits(417) 0.0 77/141(55%) 0/141(0%) Plus/Plus
Query     1791  ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  2213
                +LVSSFEEKKIV ++ G+K   +T+GESTGLNF+ G IL++++S  T DRRW TALSRFSH++  +N  GV+ +  ++HF GKPL+ F T ++  + I DLLPG P    GF   +G +EGVRE KL GDPWLK  +FLGQ
Subject   4764  VLVSSFEEKKIVAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNAITHFVGKPLHKFFTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ  5186

Range 4: 3228 to 3476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 35/83(42%) 0/83(0%) Plus/Plus
Query      237  GKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESIADPALSTQ  485
                G+LR H  EC  S   E L GC +  S  ++ D F+ F V  DGNCFWHSVG L+  DG  LK  +    + + +  P LS Q
Subject   3228  GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLSKQ  3476

Range 5: 4769 to 5182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 61/138(44%) 0/138(0%) Minus/Minus
Query     1796  PKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRKW*SGFPAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLET  2209
                P+K + F+ GSP S +S TPS  P     P    G PGS+S+++      V+  *SG P K     S +TP+   K   *L  +RAV+  RS V   S   KI P  KF+PVDSP V    F P+*  TIFFSSKLET
Subject   4769  PRKILVFNHGSPTSLASLTPSSAPTWLWNPSMSSGRPGSRSIMSSLHALFVKNL*SGLPTKWVIALSQVTPMPLMK*MS*LNLERAVHQRRSLVRALSYVTKIAPFWKFNPVDSPYVIHFIFRPR*AATIFFSSKLET  5182

Range 6: 5390 to 5617 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 42/76(55%) 0/76(0%) Minus/Minus
Query     2417  TASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN  2644
                TASCI  +  L F GTL RKVSS+N P G A  +FA S  G E    FLTA+R V  S+PLCLGY+ S  S AL+N
Subject   5390  TASCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN  5617

Range 7: 3632 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 38/92(41%) 0/92(0%) Minus/Minus
Query      656  CSLVMSNKADMRPLGLITSISPLMSHLAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*  931
                CS    N A + P  L    SP +S L Q+   S    R  M +P P   SSK     GL    +TSTS   SAE IA+I  PF G QG K*
Subject   3632  CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*  3907

Range 8: 4502 to 4729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 32/76(42%) 0/76(0%) Minus/Minus
Query     1526  SCIL*KMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSILYL*DLPSSNLNMSLCSAPSIARSFWESYVL*QGSPA  1753
                SCIL +   S+++ V    L+  G+L  N GF NL L IL L*  P   L +SL     +  S  +S  L*QGSPA
Subject   4502  SCILSQRVYSSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA  4729

Range 9: 4163 to 4297 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 19/45(42%) 0/45(0%) Minus/Minus
Query     1187  RSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVN  1321
                +S L++ A  LLGETKV   P D  M  L ++L P P VP   ++
Subject   4163  KS*LMDSASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIIS  4297

Range 10: 3251 to 3415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 23/55(42%) 0/55(0%) Minus/Minus
Query      260  FKASPSVLNKKPTECQKQLPSPGTENLLKXXXXXXXXXSI*QPSSTSLDPEKEHS  424
                FK SPS     PTECQKQ PS  T    K S S         P S S+  +  HS
Subject   3251  FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHS  3415

Range 11: 5240 to 5365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 20/42(48%) 0/42(0%) Minus/Minus
Query     2267  SSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLN  2392
                SS NC VV  P   S  S      TH AL  SRL+ G+ VLN
Subject   5240  SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN  5365

Range 12: 4359 to 4793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 62/145(43%) 0/145(0%) Plus/Plus
Query     1383  VVTFEVFLRKIENLKAGHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEK  1817
                V TFE+F+  ++++K GH V+ DE+QLFPPGY+DL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G+SY++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F +   K     ++ S  E+K
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEKK  4793

Range 13: 4166 to 4267 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 12/34(35%) 0/34(0%) Plus/Plus
Query     1190  DSCAWNFWSRQKLSVQELHEEV*R*VRDLCFTQE  1291
                D+ +WN   R++  +QE+H EV     + C T+E
Subject   4166  DNDSWNVRMRKEFLIQEVH*EVPWKSHNFCLTKE  4267

Range 14: 4766 to 4930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 17/55(31%) 0/55(0%) Plus/Plus
Query     1793  SGFKL*GKENCAVLLWYEATNTNIW*INGAELQTWWDFNFT*LIPY**S*VVNGP  1957
                + FK *G+++C      E    ++ *IN  +     +F+  *   Y**S +V+ P
Subject   4766  ASFKF*GEKDCRSSSGPEDEMYHVR*INWVKFPEGSNFSHI*ECSY**SALVDCP  4930

Range 15: 4839 to 5165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 33/109(30%) 0/109(0%) Minus/Minus
Query     1866  L*PRITTKLFLSHSFISPNANVEAIKEVGLTGKQVPYHILPTLRRQEVVKWFPSKM*EETLHAYTSNVYQVQIVTKA**GR*PPTIISME*VM*N*NPTMFEVQPR*FT  2192
                L*P IT     S +FIS N  +E+  E   + K +   I+     +E+VKW   K+ +  +      + +V ++T+ * G  P  I S   ++ +*N ++ E+ P *FT
Subject   4839  L*PWITH*FSFSDTFISTNLALESFNEFWPSRK*INNVIVTCPLCEELVKWLTHKVGDCIVPGDAHAINEVNVMTEP*KGSPPTPITSKSTLICD*NCSLLEI*PS*FT  5165

Range 16: 5289 to 5612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 27/108(25%) 0/108(0%) Minus/Minus
Query     2316  FMHQVSIVACIQWNLRKESV**ELPVWLCAPQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNP  2639
                F+H   I+  IQ +  ++ V  E      + +FC    R  +  +  + H++   I   MP +Y+F + +R++ LL +   + I ELLS  +T +   +  +    NP
Subject   5289  FLHHFFIMTAIQRHSFQKGVKQEFAERFGSSKFCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNP  5612

Range 17: 3615 to 3878 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 21/88(24%) 0/88(0%) Minus/Minus
Query      639  HASARINNLDFSINVTLGTNVECFEGLSEVHHVQATTLAQFFKDVICGRSAQIVKDIHLTSAERRGNSGYHAAIQWGTGLKMI*LQAQ  902
                ++S  IN+     +V   T+ E  E   EV   + +T   FFK+++  R A+  ++I+  + +   N   +  + W    ++I L  Q
Subject   3615  NSSIFINHDQLPTSVNTTTD*ENLE*SGEVKDAETSTFCNFFKEILMSRLAKYSQNINFPAIKCGRNCPNYTPVHWHARFEVIILTNQ  3878

Range 18: 4567 to 4722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 20/52(38%) 0/52(0%) Minus/Minus
Query     1591  YCEKWHSQRTLQSWSPS*NDMAA*TQTLDSQTSGSQYYTCRTCPQVISICHF  1746
                YC K  +   L+S    *   A   +TLDS TS S+Y TC       S  HF
Subject   4567  YCPKECTPPHLESIGSY*GCKAICRKTLDSGTSDSRY*TCNFAR*EFS*YHF  4722

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 19

Range 1: 3475 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 116/276(42%) 0/276(0%) Plus/Plus
Query      495  KQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL  1322
                KQL +N +AE E +A FC  + ++L ++    E +W F   E      L  Q NHF+PC P+NGC+I AIASAL RREVDVL  L +P+   +F+E+ +G G ++  L+  FE F IC   D  GE+ ++N  GR+ A F +  EH+ H+  +     S  V +L  V  SA+  L+MNG++I Y PS +RA  L   L  G TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3475  KQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 2: 4768 to 5190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 78/141(55%) 0/141(0%) Plus/Plus
Query     1791  ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  2213
                +LVSSFEEKKI+ ++ G+K   +T+GESTGLNF+ G IL++++S  T DRRW TALSRFSH++  +N  GV+ +  L+HF GKPL+ FLT ++  + I DLLPG P    GF   +G +EGVRE KL GDPWLK  +FLGQ
Subject   4768  VLVSSFEEKKIIAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNALTHFVGKPLHKFLTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ  5190

Range 3: 5242 to 5622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 76/127(60%) 0/127(0%) Plus/Plus
Query     2265  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAV  2645
                WFKTH+P+  LE+ RA+WV ++  KE RE R G  TT+QF DEH   R  +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VPL+  H++ +M  AV
Subject   5242  WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAV  5622

Range 4: 3232 to 3480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 33/83(40%) 0/83(0%) Plus/Plus
Query      237  GKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESIADPALSTQ  485
                G+LR H  EC  S   E L GC +  S  ++ D ++ F V  DGNCFWHSVG L+  DG  +K  +    + + +  P LS Q
Subject   3232  GELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLSKQ  3480

Range 5: 4770 to 5189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 63/140(45%) 0/140(0%) Minus/Minus
Query     1793  WPKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRKW*SGFPAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETR  2212
                WP+K + F+QGSP S +SRTPS  P    KP    G PG++S+++      V+    G P KC +  S +TP+ F K   *L  DRAV+HLRS V   S   +I P  K  PVDSP V      P+    IFFSSKLETR
Subject   4770  WPRKILVFNQGSPTSLASRTPSSAPTWL*KPSISSGRPGNRSIMSSLQALLVKNLCRGLPTKCVKALSQVTPIPFIK*IS*LNLDRAVHHLRSLVKALS*VTRIAPF*KLRPVDSP*VMHFILRPRCAAIIFFSSKLETR  5189

Range 6: 5244 to 5621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 61/126(48%) 0/126(0%) Minus/Minus
Query     2267  TASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLN  2644
                TA+ I   L L   GTL +KVS +NFP G A LN A S  G E    F TA++ V  S+PLCLG M S LS AL++ S L  LCSS NC VV  P   SR S  +   TH AL  S  + G  VLN
Subject   5244  TANSIISLLCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN  5621

Range 7: 3570 to 3911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 42/114(37%) 0/114(0%) Minus/Minus
Query      590  CSLVMSNKADMRPLGLITSISPLMSHLAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHKGHSLSPNFQLTS  931
                CS    N A + P  L    SP +S L Q+   SK+  R  + +P P   SS      GL R  +TSTS    AEA+A++ QPF G QG K*   + K+     S   N Q+ S
Subject   3570  CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS  3911

Range 8: 4167 to 4301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 24/45(53%) 0/45(0%) Minus/Minus
Query     1187  RSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVN  1321
                +S L++ AR LLGETKV   P D  M  L R+LLP PKVP    N
Subject   4167  KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITN  4301

Range 9: 4506 to 4706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 30/67(45%) 0/67(0%) Minus/Minus
Query     1526  SANAAVMEPFLK*HGSLDSNIGFTNLRLSILYL*DLPSSNLNMSLCSAPSIARSFWESYVL*QGSPA  1726
                S+++ V     K HGSL +  GF N  L +L L* LP + L MSL     I  S   S  L*QGSPA
Subject   4506  SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA  4706

Range 10: 3348 to 3419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 15/24(62%) 0/24(0%) Minus/Minus
Query      353  FKASPSVLNKKPTECQKQLPSPGT  424
                F  SPS   + PTECQKQLPS  T
Subject   3348  FMHSPSTPIRGPTECQKQLPSAST  3419

Range 11: 3948 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 20/48(42%) 0/48(0%) Minus/Minus
Query      968  TPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTSLSSSTFML  1111
                TPV P SK      A S  G * I  PFI R   A   T   S T  L
Subject   3948  TPVAPSSKLSSKVEARSMDGL*SISAPFIARNLMALFDTRFRSDTIGL  4091

Range 12: 4363 to 4803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.9 bits(347) 0.0 63/147(43%) 0/147(0%) Plus/Plus
Query     1383  VVTFEVFLRKIENLKAGHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI  1823
                V TFE+F+  ++++K GH V+ DE+QLFPPGY+DL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R+L G++Y++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F +   K     ++ S  E+K I
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEFSMMGRKDCPVVLVSSFEEKKII  4803

Range 13: 5400 to 5525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 17/42(40%) 0/42(0%) Plus/Plus
Query     2423  QRV*KI*KHISKA*R*RFGNLPHGCQETSKVF*ASS*SCKIE  2548
                QR *K+* H+ K *   + ++ +GC+E  K+  +S *+C+IE
Subject   5400  QRS*KV*SHLPKT*GN*YRHVLNGCKEKVKLLLSSC*TCQIE  5525

Range 14: 4182 to 4271 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 12/30(40%) 0/30(0%) Plus/Plus
Query     1202  WNFWSRQKLSVQELHEEV*R*VRDLCFTQE  1291
                WNFW   K S Q++H ++ R    LCF+++
Subject   4182  WNFWLW*KFSFQKIH*KITRKGNHLCFSKK  4271

Range 15: 3615 to 3716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/34(32%) 0/34(0%) Plus/Plus
Query      635  NFVLAIKSFSTLCPIEWLHDNRYCLCARQT*GGC  736
                N  L+ +SF  L   +WL    +C C +   G C
Subject   3615  NLNLSRQSFQALHACKWLRH*GHCFCFKSERG*C  3716

Range 16: 5000 to 5170 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 19/57(33%) 0/57(0%) Plus/Plus
Query     2023  HILLGNHFTTS*RRRVGRM**GTCFPVSPTSLMASTLALGEMKECERKSFVVILG*R  2193
                HILL N   + * R +  M    C+  + + L      LG+M+  ER + + I G*R
Subject   5000  HILLVNPCISF*PRELAMMTLLICYLAAQS*LKVFRAKLGQMRAFERLN*LEIPG*R  5170

Range 17: 5236 to 5526 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 28/97(29%) 0/97(0%) Minus/Minus
Query     2259  PQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFL  2549
                PQF  F+    + * F  SH E   I + M W+  F  F+ V +       +FI EL    +  S F++ L    ++P  P   +   W M  +P L
Subject   5236  PQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPIL  5526

Range 18: 4768 to 4818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 13/17(76%) 0/17(0%) Minus/Minus
Query     1791  TKVRLHNFLFLKA*NQN  1841
                TK+R +NF FLKA*NQN
Subject   4768  TKMRCNNFFFLKA*NQN  4818

Range 19: 4153 to 4260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 13/36(36%) 0/36(0%) Minus/Minus
Query     1173  NKGHELTFRPLHEALVQKAFACSKSSKHNCQFPRFD  1280
                NKG  L+    +E   ++ F  +KSSK + Q P  D
Subject   4153  NKGDCLSG*FFNEFFEKRTFTTAKSSKDHNQLPVMD  4260

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 15

Range 1: 4772 to 5158 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.8 bits(410) 0.0 79/129(61%) 0/129(0%) Plus/Plus
Query     2265  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVQE  2651
                WFKTH+PL  LES RA WV ++  KE+REVRCG ETT QF D+H       L+NA ERFE+IYPRH+G+DSVTFLMAV+KRL FS+P VE+AKL RAKPYGKFLL+ FL ++PL    ++ L   A +E
Subject   4772  WFKTHLPLFELESIRAGWVHRIMNKEYREVRCGSETTAQFPDDHPNRSKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSRPSVESAKLNRAKPYGKFLLNEFLKRIPLKGGLDSALFSRAKRE  5158

Range 2: 4277 to 4720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 76/148(51%) 0/148(0%) Plus/Plus
Query     1770  SKTSLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ  2213
                S T  D +LVSSFEEKKI+ ++ G     LTFGESTGL F  G ILISH+S  T +RRW+TALSRF  N+  VN+ G   E     F G+ L+ FLT  +    I D LPG P   N F   +GR+EGV E KL GDPWLK  + L Q
Subject   4277  SNTEFDVVLVSSFEEKKIIWAHLGRDVEVLTFGESTGLTFNRGIILISHESTLTSERRWITALSRFRLNIIFVNLIGNCAEDVCQVFHGRTLFRFLTKTATIANIVDQLPGYPELTNDFGDKVGRSEGVMEAKLTGDPWLKTEIDLLQ  4720

Range 3: 3953 to 4225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 46/91(51%) 0/91(0%) Plus/Plus
Query     1440  VIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMT  1712
                V+ DEVQL+PPGY+DL +  +  +  I L+GDPCQS YDS KDRA+    + DI  +LE K Y++N  SRRF + MF  RLPC     +MT
Subject   3953  VVLDEVQLYPPGYLDLMMFCLSPNCQIYLSGDPCQSDYDSAKDRALFDGLRGDIFEVLEAKKYKFNASSRRFQSKMFIGRLPCRMDTKAMT  4225

Range 4: 3572 to 3859 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 46/96(48%) 0/96(0%) Plus/Plus
Query     1035  SKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL  1322
                S++ Y PS+ERA  L+  LL G TG++ D   N  K WL+     N + R L VVLGTFG+GKS L+K F+ ++  + + FVSPRR+LA+ IK+DL
Subject   3572  SEVDYKPSWERARNLEESLLNGTTGILCDRTINLQKNWLTHDRKLNDEVRSLGVVLGTFGSGKSTLFKRFIVKNPSRSIVFVSPRRSLADQIKEDL  3859

Range 5: 3182 to 3496 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 37/105(35%) 0/105(0%) Plus/Plus
Query      645  LQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGN  959
                L   HF+P  P+NGC++ +IA  LG+ E  +L+ + RP+   I E L +G GLN+  L  AF  F ICA+      +  +N  G + A +++ + HI ++ K  N
Subject   3182  LSGEHFEPALPVNGCVVKSIAETLGQTEAKILSVVGRPTNRLILEGLVEGDGLNIEDLEAAFAIFGICARVSTERGVFTLNKDGNLHANYELKSGHIMYLRKAPN  3496

Range 6: 2804 to 2965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/54(46%) 0/54(0%) Plus/Plus
Query      264  CSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALK  425
                C   G  E L    I  +  Y   +F+ F VPGDG+CFWHS+G LL  DG  LK
Subject   2804  CGEFGDTESLFDVLIRRNFSYSAKNFHTFPVPGDGSCFWHSLGALLGVDGEELK  2965

Range 7: 3026 to 3139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 15/38(39%) 0/38(0%) Plus/Plus
Query      495  KQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKF  608
                KQ+    YAE E IA FC    V L+++ P++  S++F
Subject   3026  KQMEGKQYAERESIAAFCRIQSVHLVVLLPDHNFSYEF  3139

Range 8: 4774 to 5115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 59/114(52%) 0/114(0%) Minus/Minus
Query     2267  FSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLN  2608
                FSG L R   +KNFP G A  + A ST G E    F TA++KVTESLPLCLG M SNLS A     L     SS NC VVS P  TS  S   I  TH AL+DS    G  VLN
Subject   4774  FSGILFRNSFNKNFP*GLALFSLADSTDGREKLSLFFTAIKKVTESLPLCLG*MASNLSAAFAKVILDLFGWSSGNCAVVSEPQRTSLYSLFIIR*THPALIDSSSNKGRCVLN  5115

Range 9: 4279 to 4542 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 40/88(45%) 0/88(0%) Minus/Minus
Query     1772  PAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETRMASKEVL  2035
                P K  +  S   P+ FT     L  +RAV HL S V   S EI+I P LK +PVDSP V  S  +P+    IFFSSKL+T+  S  VL
Subject   4279  PWKTWQTSSAQFPMRFTNMIFNLNLERAVIHLLSLVRVLS*EIRIIPLLKVNPVDSPKVRTSTSLPRWAQIIFFSSKLDTKTTSNSVL  4542

Range 10: 4594 to 4719 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 22/42(52%) 0/42(0%) Minus/Minus
Query     2087  WPKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKS  2212
                W +    F+QGSP SF+S TPS RP L+ K L   G PGS S
Subject   4594  WRRSISVFNQGSPVSFASITPSERPTLSPKSLVSSG*PGSWS  4719

Range 11: 3730 to 3858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 23/43(53%) 0/43(0%) Minus/Minus
Query     1193  RSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTT  1321
                RS LI  A+ LLG+TK  +L     M LL R L P P VPSTT
Subject   3730  RSSLI*SAKDLLGDTKTMDLEGFFTMNLLKRVLFPDPNVPSTT  3858

Range 12: 3196 to 3390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 24/65(37%) 0/65(0%) Minus/Minus
Query      659  LAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K  853
                LAQM   +KA+++  MF+P P    S+M    GL        S  P   AI +  QPF G  G K
Subject   3196  LAQMPKIAKAASKSSMFKPSPSTKPSRMSLFVGLPTTESIFASVWPRVSAIDLTTQPFTGRAGSK  3390

Range 13: 2878 to 2958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 15/27(56%) 0/27(0%) Minus/Minus
Query      338  ASPSVLNKKPTECQKQLPSPGTENLLK  418
                +SPS  ++ P  CQKQLPSPGT  + K
Subject   2878  SSPSTPSRAPKLCQKQLPSPGTGKVWK  2958

Range 14: 3950 to 4081 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 14/44(32%) 0/44(0%) Minus/Minus
Query     1437  VLLGVICALTGVTSK*NESVTSYGQ*TKVNVARRKKLNLIKNHT  1568
                +L  VI  LT +T + + +V +  +   V +    +LNLI+N+T
Subject   3950  ILSRVIITLTRITRQVDLAVWAQTEHH*VKIPGWVQLNLIQNYT  4081

Range 15: 3025 to 3120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 13/32(41%) 0/32(0%) Minus/Minus
Query      494  YSGVMMISLT*CLMQNKAIISFSA*ALSPSCF  589
                +SG      T  ++QN AI S SA  L   CF
Subject   3025  WSGRSTTRCTD*ILQNAAIDSLSAYCLPSICF  3120

Rubus canadensis virus 1 isolate BM-01, complete genome

Sequence ID: Length: 8328 Number of Matches: 19

Range 1: 4825 to 5211 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.9 bits(406) 0.0 77/129(60%) 0/129(0%) Plus/Plus
Query     2265  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVQE  2651
                WFKTH+PLS  ES R +W+ ++  +E RE R G E + QF +EH  G+   LSNA ER+E+IYPRHKG DSVTFLMAV KRL FS+P VE+AKLRRA+ +GK +LD FL  VPL  +HN N+M EAV E
Subject   4825  WFKTHVPLSEQESCRIQWLNRLLSREAREKRMGSEISTQFAEEHHPGQGSALSNAAERYEAIYPRHKGGDSVTFLMAVAKRLTFSRPAVESAKLRRAENFGKMMLDKFLKHVPLRRAHNQNMMAEAVAE  5211

Range 2: 4342 to 4689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 58/116(50%) 0/116(0%) Plus/Plus
Query     1779  SLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGF  2126
                S+D ILVS FEEK+I  S+ G     LTFGESTGL F+ G ILI+ DSF    +RW+TAL RF   L   N+T +S E       G+PLY FLT K+  + + ++LPG+PNF  GF
Subject   4342  SVDVILVSGFEEKRICWSHLGAGNKCLTFGESTGLTFESGIILITSDSFLCGKKRWITALPRFRKLLVFSNLTNLSYEDIAQKAFGEPLYKFLTEKASTDDLLEILPGKPNFVKGF  4689

Range 3: 3997 to 4272 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 52/92(57%) 0/92(0%) Plus/Plus
Query     1431  GHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGS  1706
                G  VI DEVQL+PPGYVDL  + I SD  + L GDPCQS YDS KDR I    + DI+ +L  KSY +N+ESRRFV  +F  RLPC F  G+
Subject   3997  GTVVIVDEVQLYPPGYVDLLCMLISSDCKVFLTGDPCQSDYDSDKDRMIFYGMEPDIMHILNEKSYNFNVESRRFVGSIFRGRLPCEFLNGT  4272

Range 4: 3520 to 3894 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 48/125(38%) 0/125(0%) Plus/Plus
Query      969  SIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDDGCK  1343
                S+ V  L  V +  L+++S   +++ Y PSF+RA  L   LL G TGV+     N+   +L G      + R L ++LGTFG+GKSF +K F+K +  + V FVSPR+ALA+ I +++    G K
Subject   3520  SLPVSNLIPVAKDQLEVISKCCTEVEYTPSFDRANTLSESLLNGTTGVLCSRNLNNQVDFLEGNEKLCKEKRNLMILLGTFGSGKSFFFKKFIKDNSMRKVIFVSPRKALADIILQEISGIKGKK  3894

Range 5: 3187 to 3483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 36/99(36%) 0/99(0%) Plus/Plus
Query      639  LCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHI  935
                L  + NHF+PC P NGC++ A+A+ +G++E+DVL+YL R     I+ ++  G GL+++    AF  F I A  + +G++  IN +G +   F +T++H+
Subject   3187  LVCKGNHFEPCLPKNGCVVRAVAACIGKKEIDVLSYLGRGEFTDIYNQIMSGNGLSILDFERAFSMFGIKAFLETDGKVLEINSNGSIEGSFRLTDDHL  3483

Range 6: 2713 to 2979 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 31/89(35%) 0/89(0%) Plus/Plus
Query      159  KGDFNIKKIEDGSIFVISYRAPVRSPGKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALK  425
                K + +I+ + +G +     +    S G+  VH + C      E L   +I AS D D  +F  F VP DG+CFWHSVG+L  T+G+ ++
Subject   2713  KFEHSIRSMTEGRVSYTFRKVVHDSLGQEIVHDSICLLDCFSENLFDVKISASQDLDFKNFQTFPVPADGDCFWHSVGYLFGTNGIDMR  2979

Range 7: 4696 to 4773 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 16/26(62%) 0/26(0%) Plus/Plus
Query     2136  IGRNEGVREEKLCGDPWLKVMLFLGQ  2213
                +G++EG +E KL GDPWLK  +FLGQ
Subject   4696  VGKSEGEKEVKLQGDPWLKEKIFLGQ  4773

Range 8: 3058 to 3150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 11/31(35%) 0/31(0%) Plus/Plus
Query      516  YAENEMIALFCIRHHVRLIIITPEYEVSWKF  608
                +AE E +ALF     V + +   E  V+W F
Subject   3058  WAEREAVALFARVMGVEVTVFYIEEGVNWTF  3150

Range 9: 4824 to 5210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 59/129(46%) 0/129(0%) Minus/Minus
Query     2264  SCTASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLNH  2650
                S TAS I   L     GT  + +SS  FP   A LN A ST GLE      TA++KVTES PLCLGY+ S LS A       P  CSS NC  +S P L S  S       H  L DS  L G  VLNH
Subject   4824  SATASAIMF*L*ALLKGTCFKNLSSIIFPKFSALLNLADSTAGLEKVNLLATAIKKVTESPPLCLGYIASYLSAAFDKADPCPG*CSSANCVEISEPILFSLASLLNNLFNHWILQDSCSLKGT*VLNH  5210

Range 10: 4347 to 4559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 33/71(46%) 0/71(0%) Minus/Minus
Query     1784  VMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETRMAS  1996
                V F K++      RAV HL     NES  I+I P     PVDSPNV      P+*D  I FSSK ETR+ S
Subject   4347  VKFEKTRSFRNLGRAVIHLFLPQRNESDVIRIIPDSNVKPVDSPNVRHLLPAPR*DQQILFSSKPETRITS  4559

Range 11: 3603 to 3851 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 31/83(37%) 0/83(0%) Minus/Minus
Query     1052  ARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLG  1300
                ARA LGETK+T L     M  L +KL P PKVPS  +     +     P         F    TPV P ++      ALSK G
Subject   3603  ARAFLGETKITFLIELSLMNFLKKKLFPDPKVPSKIIKFLFSLHNFSFPSRKST*LFRFLEHNTPVVPFNRDSDKVFALSKEG  3851

Range 12: 2907 to 2966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 15/20(75%) 0/20(0%) Minus/Minus
Query      353  PSVLNKKPTECQKQLPSPGT  412
                P V NK PTECQKQ PS GT
Subject   2907  PLVPNKYPTECQKQSPSAGT  2966

Range 13: 4698 to 4769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 11/24(46%) 0/24(0%) Minus/Minus
Query     2138  PKKSMTFSQGSPQSFSSRTPSFRP  2209
                P+K  +FS GSP + +S +PS  P
Subject   4698  PRKIFSFSHGSPCNLTSFSPSDLP  4769

Range 14: 4819 to 5199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 43/127(34%) 0/127(0%) Minus/Minus
Query     2259  FMHQVSIVACIQWNLRKESV**ELPVWLCAPQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFL  2639
                F H V IV+  Q N+ ++ V*  L   L +PQF   + R RK      SH+E +RI  FMP +Y F SF  + Q  +    MF  +L   F T    + F       P     F +T  D+ FKP +
Subject   4819  FSHHVLIVSPSQGNMLQKFV*HHLSEILSSPQFGRLHCRPRKSQPLSHSHQESHRITPFMPRVYCFISFCCI*QSGSLPRMMFFSKLCGNFRTHPLLSCFPTQQPVQPLDSAGFLLTQRDVSFKPLI  5199

Range 15: 2875 to 2946 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 12/24(50%) 0/24(0%) Minus/Minus
Query      321  TH*VPKAVTITRHRKFVKVINVII  392
                +H*+PK +TI  HRK +KV  + I
Subject   2875  SH*MPKTITIRWHRKSLKVFKIKI  2946

Range 16: 4348 to 4434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 13/29(45%) 0/29(0%) Minus/Minus
Query     1785  FTKC*C*LLHTKVRLHNFLFLKA*NQNGI  1871
                FTKC   +  +KVR  N L  K  N+N I
Subject   4348  FTKCQTFVTRSKVRPANPLLFKTGNKNYI  4434

Range 17: 4994 to 5110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 21/39(54%) 0/39(0%) Plus/Plus
Query     2434  KDLKAYIQGIKVTIR*PSSWLSGNV*SFLSLKLKLQN*G  2550
                KD+K Y  GIK  IR* S WL    * FL L+  L N*G
Subject   4994  KDMKQYTLGIKGVIR*LS*WLWLRG*LFLGLQWSLPN*G  5110

Range 18: 2837 to 2944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 13/36(36%) 0/36(0%) Plus/Plus
Query      283  EKYYLVVKLRPLLIMTLMTLTNFLCLVMVTAFGTQW  390
                ++ + + K +   I+ L T   FLC  MV  FG QW
Subject   2837  QRTFSMSKYQQAKILILKTFRLFLCQRMVIVFGIQW  2944

Range 19: 4349 to 4510 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query     1786  MPFWFQALRKRKLCSLTLV*SN*H*HLVNQRG*TSNMVGF*FHMTHSILMIVGG  1947
                M F F  L++R    LTL      *HLVN + *  +   F* H  HS +   GG
Subject   4349  M*FLFPVLKRRGFAGLTLERVTNV*HLVNPQV*RLSQG*F**HQIHSFVARKGG  4510

Nucleotide Sequence (1752 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
176
352
528
704
880
1056
1232
1408
1584
1752

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
1055.9 4059.8 27% 0 46% NC_001948
285.6 1199.6 45% 1.039e-155 27% NC_009892
265.5 1185.8 38% 5.62e-147 27% NC_003462
259.5 1132.1 38% 3.119e-147 39% NC_014821
278.7 1123.8 47% 1.055e-143 33% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 19

Range 1: 6041 to 7714 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1055.9 bits(2298) 0.0 439/558(79%) 0/558(0%) Minus/Plus
Query       74  LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFELDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCKLGQNCHSVDDRLGHWLGAAFPKKVKFAILRGQHTSISTWRTL*GRHQKHNILWSQTVFPELWAFWSV*EFCTFNNCDSINGLHICTICLEFWFL*AL*LQP*SLHMSTAIMVIVRVVS*GLQGSQY*LKIVAQVRHLLQQLRKC*EV*R  1747
                LGSF+IMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCAN RLRLKTEHEGFLNMICLKAKVQFV+NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+F AFTAGVPD+PNL+GRYIKPYSPGCAV G++NILDEYLSV D SGFDVLFSDPYQNIS+P+EAHFIKSKTCRFG NTCKYL SFGF V SDGLD+VI GSPF LDVEGVLICFGKEAVDLAVAH+S+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFSA C+LG+N +S+D  LGHW  AAF ++VK  + RGQH SI +   L GR++K+N+LWS+ + P+LW    +*EFC  N C   N +H C +CLEFW  * L*L   SL M TA++   +V S G   SQ+*LK  AQVR L    R+C EV*R
Subject   6041  LGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*R  7714

Range 2: 6685 to 7773 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
482.6 bits(1047) 0.0 225/363(62%) 0/363(0%) Plus/Minus
Query       15  HLTMLTMTINFFTNMANP*SLQTS*HFLNC*SKCLTWATIFN*Y*LPCSPYETTLTITIIAVDMCKD*GCNYSAYKNQNSKQIVHIWRPLILSQLLKVQNSQTDQKAQSSGKTVWDHNMLCFWCRPYNVLHVEIDVCCPLSMANLTFLGNAAPSQCPSLSSTE*QFWPNLQVAEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNSNGEPVITSSSPSLRTLKPKDRRYLHVFSPNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  1103
                H   LTM INFF + ANP*SLQTS H L+   K LTWA +FN  *L   P E TL +   AV M KD   NY++Y++QNSKQ +H+   L L Q L+ QNSQ  + +QS G+   DH+ L F  RP N     ID CCPL+  +LT   NAA +QCPS  S E  F PN Q AEKA +CMIINF LCLVAAM*NQCLSS VGSLDF +VTT  V P TSQG+L SE CATA+STASLPK I TPSTS+  G+P +T S PSL TLKPK+ RYL VF+PNLQV D MK ASLG L+F YGSENSTSKPE S TD+YSSS+   P TA PGE GLMYLP RLG+SGTPAVKA+K SSS +SSLIK
Subject   6685  HSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK  7773

Range 3: 6040 to 6603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
325.5 bits(704) 0.0 150/188(80%) 0/188(0%) Plus/Minus
Query     1185  DKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS  1748
                D ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SP+  A*+TSIA*LS+QFSRLPIS AM I SQIN*GFLKIPSLNKHHPQNVG  TN TLALRQI+FRKPSCSVLS NL  AH+SSPANAIDS+PVSSYL+KVNN+ AIVLN+ VLASPVNLI+  DPS
Subject   6040  DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLRLAHMSSPANAIDSEPVSSYLRKVNNMLAIVLNRNVLASPVNLIIENDPS  6603

Range 4: 6464 to 7774 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
524.3 bits(1138) 0.0 250/437(57%) 0/437(0%) Plus/Minus
Query       14  PSNNVNNDNQFLHQYG*PLKPSNLLTLP*LLKQVPHLGHNFQLILTPL*PL*DNPYYHHYCCRHVXXXXXXXXXXXEPEFQTDSTYMEAVNTITIIKGAKFSD*PKSPELGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIVRNRQINCLLAKTN*DALHI*LKR*TSNHFIKPITTHIKTKG*KVLACILTKSAGLGLYEVSLPRNTDILIWVRE*HVKTGNVINRQILIKYVYPPFYSTTRRVWLDVPPRKIGSVGNSGCEGCETLVLSDELSYQTTFTATRNTMNDNWKSEHTIDTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV  1324
                P +  NNDNQFL Q+G*PLKPSNL   P    Q PHLG +FQ  LT   P * N    HYCC H QG G QLQ L  PEFQTD+T M A+  +T IKG KFSD P  PELGKDC GPQ V+L VPSL*RPP GN* MLSPE G+FDFLRKCST PMPKP VNGV V AQFAGC*KGI LHDYQ L +SC SNV+PV I+ G IS*FQ   ++K  TS  TR FE  +VRN +I+CLL K  *   +I* KR   N F++ +T ++KT+G K+ A I  K     L E+ L RN D+L+WVRE H+KT  +++ Q+LIKY+  P++ T  R+ L+VP  +I +V N+ CE  E L+L + L Y TTFT TR+TMND WK +HT +T+KLK  Q FN*+IHN   MPNT*GLI SFK + N*ASHL+L+ +QE +T+++
Subject   6464  PFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM  7774

Range 5: 6056 to 6424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 61/123(50%) 0/123(0%) Plus/Minus
Query     1364  LTQPVGIGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHY  1732
                L+Q V IG L  II+N I QV H  SNA  LP+ LR L+DPF + TPS +C + ++L   LKANH+Q+T ML FKP  ++  H+I  K  *L  C FVP +G+QH+ H V+QK  G   K HY
Subject   6056  LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD*LRLLEDPFLK*TPSAECGIGNKLNLGLKANHVQKTLMLCFKPQPSISTHVITCKCY*LRAC*FVPQKGEQHVSHSVKQKCAGLPSKPHY  6424

Range 6: 6708 to 7544 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
344.7 bits(746) 0.0 170/279(61%) 0/279(0%) Minus/Plus
Query      244  RTRVSQPSQPEFPTLPIFLGGTSSHTLLVVL*KGG*TYLMSICLLMTFPVLTCYSLTHIKISVFRGRLTS*SPRPADLVRIHASTFYPLVLMCVVMGLMK*LLVHRLS*MWRAS*FVLARRQLIWRLRTIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTASIYVLSVWNSG  1080
                R R+S  SQ  F T  I   GT S  L  V  +G   YLMS C    F VL C S TH K S F  R  S S +   L  I A+ F P VL   V    K L    L *M +  *+ L RRQ I  LRT   SN+LV+ EV  L    +*NQEI+P  I TG TLL QD  R+**SCS+MPFQQPANWAKT+TPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGP+QSFPSSG+FGQSENF PL++VI L A I+VLSVWNSG
Subject   6708  RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG  7544

Range 7: 6075 to 6425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 59/117(50%) 0/117(0%) Minus/Plus
Query     1363  KPVPFCSTQWQICCLPS*GTN*QGPSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWVS  1713
                +P  FC T W  CC P *GTN*Q  SQ  L+ M C      GLK SM+V * *FALR +++     H  DGV  +KGS R+LN* G  +ALL +W TW+I L IM+ R PM T W S
Subject   6075  RPAHFCLTLWLTCCSPF*GTN*QALSQ*HLQVMTCVLIEGCGLKQSMRVF*T*FALRPRFSLFPIPHSADGVYLRKGSSRSLN*SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES  6425

Range 8: 6439 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 37/66(56%) 0/66(0%) Minus/Plus
Query     1152  DE*RRS*SALQLCAVPG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*CA  1349
                D+  RS   L LC + G + A DEMLNF  +*SY LGLK LA  +YYE* S*S V +*VC C  CA
Subject   6439  DDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA  6636

Range 9: 7590 to 7745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 30/52(58%) 0/52(0%) Minus/Plus
Query       43  QQ*W***GLSHKGYRGVNIN*KLWPK*GTCFNS*GSVRRFEGFRG*PYW*RN  198
                QQ*W    L H G+  VN +*KL PK*G C +  G   RFEGFRG*P  *RN
Subject   7590  QQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN  7745

Range 10: 6273 to 6980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.8 bits(421) 0.0 123/236(52%) 0/236(0%) Plus/Minus
Query      808  *NQRIEGTCMYSHQICRSWTL*SEPPSEH*YFDMGQRIARQNRKCHQQTDTHQVCLSSLLQHNQESMA*CTSQKDWECXXXXXXXXXNSRPQ**ALLSNYFYRYQEHYERQLEI*AHYRHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PGTAHSCSALQLLLHSSFQLTTHPTCRHRTPQLHNYQCNFPGYPFHEQCKFSPKSIEVS*RSLL*TNTIHKM  1515
                *N+R +  C YS Q  +  T *+ P  E * F MG R A QN K   +T THQV   SL  H  E+ A*CT   D  C E  L*+L*NS P+  A L NYFY YQ HYE  LEI*AH +H QTQ  T L*L+YS* S++AK+LRPN *LQ   KLSISS A  *P   H+ +   LL  SSFQ    P   HR P  HN Q N PG P   QC  +P+ IE S*RSL * NTI +M
Subject   6273  *NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRLIEAS*RSLP*INTIRRM  6980

Range 11: 7032 to 7478 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 77/149(52%) 0/149(0%) Plus/Minus
Query      310  KILRLTKKPRARERLSGTTICYAFGAVPITSSMWKLMYVVP*VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SRNRAQPPNQLPPCQNKLGRPPHL  756
                KILRL + PRA E L  TT+ Y F  VP+T ++ +LM VVP*+  I*L  +MQH+ NAQA  Q S  F PI RLLKRH TA*LS S  VL QQC+TSAY    DLLIS   +    +L  HK +* ++ AQ  + LPP Q+ L    HL
Subject   7032  KILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHL  7478

Range 12: 7533 to 7727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 51/65(78%) 0/65(0%) Plus/Minus
Query       61  LTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQXXXXXXXXXTCARIRVAITAPTRTRIP  255
                LTPKAFKPP+TS TV+A ASLGPQFSI IDSPVALM+QP   PLLLST ARI +AIT PT+TRIP
Subject   7533  LTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIP  7727

Range 13: 6162 to 6245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 15/28(54%) 0/28(0%) Plus/Minus
Query     1543  P*GKSYSGNLHAQF*ALICCLRTYHRPQ  1626
                P*GKS S N HA F*A      T H  Q
Subject   6162  P*GKSCSENPHALF*AATFD*HTCHHLQ  6245

Range 14: 7516 to 7779 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 72/88(82%) 0/88(0%) Minus/Plus
Query        9  YMYYLFGILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDCHC*HC*MAS  272
                YMY LFGILVLVG VIA  ILAHVDS++G+ +GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS   EEID HC*  *MAS
Subject   7516  YMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MAS  7779

Range 15: 6040 to 6390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 54/117(46%) 0/117(0%) Minus/Plus
Query     1398  AWVFCHNEIYG*SQYLFVQHNGKYVVYLLKVRTDRVRVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ETSIDLGENLHCS*NG*PGKLH**LC  1748
                A +  +NE+Y   Q++ V H G +VV+L +VRT+R+ VN +C  *+V   ++ A*N A* F E+DLP*G  ++  + +IL MVF+  RDL E SI+LG ++HC  +G PG+L+* LC
Subject   6040  ARIILYNEVYWGGQHISV*HYG*HVVHLSEVRTNRL*VNSICR**HVC*SKVAA*NRA*GFSEHDLP*GQGSVCFQSHILRMVFI*GRDLQEASINLGADMHC*GDGQPGELY*QLC  6390

Range 16: 7033 to 7278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 43/82(52%) 0/82(0%) Minus/Plus
Query      510  RCGGRPNLFWQGGS*FGGCARFRLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFSNLQIGPK  755
                RC    N+ W GGS    CA+  +Q +L*  R + *  +  EIKRS+   *ALVLHCC KT  E+DNHAV+CLFS+L+IG K
Subject   7033  RC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQK  7278

Range 17: 6766 to 6981 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 34/72(47%) 0/72(0%) Minus/Plus
Query      807  EVHQAILSWLCCKREDKHT**VSVC**HFRF*RAIL*PISKYQCSEGGSLHKVQDLQIW*EYMQVPSILWF*  1022
                +VH A+ S +C  RE  +T**V V    FRF* A+L PI K+Q S  G+ H+V++L +W EY+Q+  +L F*
Subject   6766  KVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF*  6981

Range 18: 6474 to 6572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 21/33(64%) 0/33(0%) Minus/Plus
Query     1216  VCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*  1314
                V  SW   S R*DAQF   LKL IRP*VFG++*
Subject   6474  VLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*  6572

Range 19: 7324 to 7458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 22/45(49%) 0/45(0%) Minus/Plus
Query      330  IS*ESQICHTQGTTYINFHMEDVIGTAPKA*HIVVPDSLSRALGF  464
                I * SQI   QGTT IN     V GT  K *  VV  + S ALG+
Subject   7324  IF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGY  7458

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 15

Range 1: 5939 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
285.6 bits(617) 0.0 115/167(69%) 0/167(0%) Minus/Plus
Query     1247  LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI  1747
                LGSFAIMRFTGEASTFLFNTMANMLFTFLRYEL+G ESI+FAGDDMCAN RLR+++ ++ FL  I LKAKVQF   PTFCGW L  EG+FKKP L+ ER+ IA E  NL+NCIDNYAIEVSYAY +GE   + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I
Subject   5939  LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELSGHESISFAGDDMCANRRLRVRSTYKSFLEKIRLKAKVQFTNFPTFCGWGLCPEGVFKKPDLVLERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 2: 6482 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.6 bits(377) 0.0 81/196(41%) 0/196(0%) Minus/Plus
Query      632  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFELDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLL  1219
                V +M+ +V  L  + F      +   ++VH+VPGSGK++LIRE +  +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS +  +GFD  FSDP+QN      AHF+   + RFG NT   L S G++V S   DE+I  + F  ++EG +IC  K   D    +  +++LPC+VRG+TF+VVT +
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 3: 7163 to 7381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 41/73(56%) 0/73(0%) Minus/Plus
Query      325  MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFG  543
                MP  QP +++K+V PL IGL +G+V+  L +S LP++GDNIH  PHGG Y DGTK I YCGP++SFP+ G+ G
Subject   7163  MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG  7381

Range 4: 7446 to 7601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 14/52(27%) 0/52(0%) Minus/Plus
Query       96  ILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVK  251
                +++ V A +  LI+ ++         C I  TGES+ + NC  S      +K
Subject   7446  VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLSPEFLEVLK  7601

Range 5: 7109 to 7150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/14(64%) 0/14(0%) Minus/Plus
Query      551  YIAATRHRKKLIIM  592
                YIA TRH KK+ I+
Subject   7109  YIALTRHSKKIQIL  7150

Range 6: 5938 to 6420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 83/161(52%) 0/161(0%) Plus/Minus
Query     1266  EIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS  1748
                E EH      LT N TQL*CAS SSS      +SP  *A +TSIA*LSMQF RL +S A+  LS    GFLK PS ++  PQ VG   N T AL  I  R       +L+LLFAH+SSPA  + S P+SS  + V +I A+VL + VLASPVNLI+AK+P+
Subject   5938  ETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVSTAI*SLSSTKSGFLKTPSGHRPQPQKVGKFVNWTFALSLIFSRNDL*VDRTLSLLFAHMSSPAKLMLS*PLSS*RRNVKSILAMVLKRNVLASPVNLIIAKEPN  6420

Range 7: 7162 to 7380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 31/73(42%) 0/73(0%) Plus/Minus
Query      326  PKSPELGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGI  544
                PK+P +GK   GPQ ++ LVPS * PP G * MLSP  G    ++   T P  +P+  G T   +  GC +GI
Subject   7162  PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI  7380

Range 8: 6883 to 7065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 27/61(44%) 0/61(0%) Plus/Minus
Query      636  KVTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNSNGEPVITSSSPSLRTLKPK  818
                KVTTS V PRT QGSL S+     KS+     Q+  PS+S       ++SSS +L TL P+
Subject   6883  KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR  7065

Range 9: 6598 to 6864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 35/89(39%) 0/89(0%) Plus/Minus
Query      837  VFSPNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  1103
                VF P    L   K*A   +  F* GSE   S P  +S +RYSSSM  LP    P     M  P+  G SG+P  KA      + +SLI+
Subject   6598  VFLPKRCELLPTK*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR  6864

Range 10: 5945 to 6322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 43/126(34%) 0/126(0%) Plus/Minus
Query     1364  LTQPVGIGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKR  1741
                L   V I +LNCII+NAI +V  F SN   L +Q+ F ++P   Q P+T+     +L   L+ +  +E  +    P   VC H+I  + N     + +  + K+HI H VE+K    T + HY KR
Subject   5945  LPHGVSI*NLNCIIVNAILEVVCFNSNLKPLQHQIWFFENPLRTQAPATESWEIRKLDLCLEPDLFKERLVG*SDPKPPVCTHVITGEANAFMTTKLITKKRKEHISHGVEKKCASLTSEPHYCKR  6322

Range 11: 6362 to 6430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 12/23(52%) 0/23(0%) Plus/Minus
Query     1256  KQSRN*ASHLVLISNQEPHTVVV  1324
                K+ RN     V + N EPHTVVV
Subject   6362  KEIRNRTF*KVGVLNNEPHTVVV  6430

Range 12: 6228 to 6380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 26/51(51%) 0/51(0%) Plus/Minus
Query     1306  TAHSCSALQLLLHSSFQLTTHPTCRHRTPQLHNYQCNFPGYPFHEQCKFSP  1458
                T+HSCS    LLHSS    T P  +H  PQLHN QCN  G  F +Q + SP
Subject   6228  TSHSCSVHPFLLHSSTWKVTPPWSKHMKPQLHNCQCNSGGCLFQQQSEASP  6380

Range 13: 6177 to 6323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 23/49(47%) 0/49(0%) Minus/Plus
Query     1363  VDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWVS  1509
                V G C  +G  +N     R F LL+K  T +IAL IMQLR  M T W S
Subject   6177  VAGACVLRGFSKNQIWCWRGFRLLLKQTTSRIALTIMQLRFHMLTPWGS  6323

Range 14: 5947 to 6021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 10/25(40%) 0/25(0%) Minus/Plus
Query     1665  FCHNEIYG*SQYLFVQHNGKYVVYL  1739
                FC+NE++ *  ++  QH+G Y +Y+
Subject   5947  FCNNEVHW*G*HISFQHHG*YALYV  6021

Range 15: 7279 to 7383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 12/35(34%) 0/35(0%) Minus/Plus
Query      323  QHTSISTWRTL*GRHQKHNILWSQTVFPELWAFWS  427
                QH+S + W  L   H ++ +L S+  FP+ W   S
Subject   7279  QHSSSAPWWKLC*WH*ENQLLRSKGEFPDSWCLRS  7383

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 15

Range 1: 6090 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 109/165(66%) 0/165(0%) Minus/Plus
Query     1253  LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  1747
                LGSFAIMRFTGEASTFLFNTMANMLFTFLRY+L G E+I FAGDDMCANSRL++      FL+ I LKAKVQF   PTFCGW L + G+FKKP L+ ER+ IARE  NLENCIDNYAIEVS AY++GE     +  +EV+AHYNCVRF+V++ H ++ +I  LF+
Subject   6090  LGSFAIMRFTGEASTFLFNTMANMLFTFLRYDLNGREAICFAGDDMCANSRLKVTNRFSNFLDKIKLKAKVQFTATPTFCGWGLCEHGVFKKPDLVLERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK  6584

Range 2: 6702 to 7166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 64/155(41%) 0/155(0%) Minus/Plus
Query      755  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFEL  1219
                V IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS +  +GF+ LFSDPYQN      AHFI   + RFG  T + L   G+N+ S   D V   + F+L
Subject   6702  VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL  7166

Range 3: 7378 to 7650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 44/91(48%) 0/91(0%) Minus/Plus
Query      277  SEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTA  549
                + MPF QP +++K+V P+ +G+ + +VL  L +S LP  GDNIH  PHGG Y+DGTK I+YCGPR SFPSS L          II+ ++ A
Subject   7378  TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPRDSFPSSSLISSGTPMIIGIIIFLIFA  7650

Range 4: 7167 to 7301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query      623  LDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSR  757
                ++ EGV+IC  K   D    H  ++K PC+VRGATFD+VT +  +
Subject   7167  IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK  7301

Range 5: 7676 to 7834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 17/53(32%) 0/53(0%) Minus/Plus
Query       96  GILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVK  254
                G+ V    V   ++L        +S  C I  TGES+ +  C  SEA    VK
Subject   7676  GLAVAAAVVAYLVLLLAQQLYMSNSSQCTIVITGESVSVVGCVYSEAFIELVK  7834

Range 6: 6089 to 6547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 84/153(55%) 0/153(0%) Plus/Minus
Query     1290  LFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS  1748
                L  T  RTQL* ASTS      +  SP L A +TSIA*LS+QFS+  +S A+  LS+   GFL  P  ++ HPQ VG   NCTLAL  I+ RK     ++L+L  AH+SSPA  I S P+ SYL+KV +IFAIVLNKKVLASPV  IMAK PS
Subject   6089  LCCTMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSKFLVSLAICNLSRTRSGFLNTPCSHRPHPQKVGVAVNCTLALSLILSRKFENLFVTLSLELAHMSSPAKHIASLPLRSYLRKVKSIFAIVLNKKVLASPVKRIMAKLPS  6547

Range 7: 6818 to 7141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 41/108(38%) 0/108(0%) Plus/Minus
Query      780  TSSSPSLRTLKPKDRRYLHVFSPNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  1103
                T SS  L  L P+  R   V  PN      MK*A   +  F  GSE     P   S D+YSS M  LP    P    L+Y+P  L  SGTP V A  L   + +  IK
Subject   6818  TMSSLLLAIL*PRSLRI*TVCLPNRCEQRPMK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASILLFRIKACFIK  7141

Range 8: 7383 to 7586 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 28/68(41%) 0/68(0%) Plus/Minus
Query      341  LGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGI  544
                LGK+ LGPQ ++L VPS * PP G   +LSP  GK   +   ST     P   G T+     G  KG+
Subject   7383  LGKESLGPQ*LILFVPS**LPP*GKL*ILSPTCGKVLLVNVNSTTATAMPTAIGNTLFE*SGG*AKGM  7586

Range 9: 7163 to 7285 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 22/41(54%) 0/41(0%) Plus/Minus
Query      639  VTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNS  761
                VT S VAPRT QG+L S  C   KS+    +QI TPS S S
Subject   7163  VTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS  7285

Range 10: 6099 to 6236 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 22/46(48%) 0/46(0%) Plus/Minus
Query     1601  VCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGK  1738
                V AH+I RK     P + +P +G++HICHC+EQ+G  FT ++H GK
Subject   6099  VSAHVITRKAYRFPPIEIIPEKGEKHICHCIEQEGACFTCEAHNGK  6236

Range 11: 6270 to 6449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 26/60(43%) 0/60(0%) Plus/Minus
Query     1388  HLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQE  1567
                + N I+IN IFQV  F+SN  SL +++RF +   F Q PST+     EL+ S K N I++
Subject   6270  NFNSIVINTIFQVPCFSSNLQSLQDKIRFFEYTMFTQAPSTESWRSSELHLSFKLNFIKK  6449

Range 12: 7384 to 7581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 23/66(35%) 0/66(0%) Plus/Minus
Query      346  ERLSGTTICYAFGAVPITSSMWKLMYVVP*VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRH  543
                +R+ G  I Y    V I +S+  +M ++  +WQ   S*  QH  N  AY     +   I RL KRH
Subject   7384  KRIPGAAIAYPLCTVLIITSVR*IMNIIAHLWQGTSS*CKQHNCNCNAYSNWKYAL*VIWRLSKRH  7581

Range 13: 6780 to 6911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 12/44(27%) 0/44(0%) Plus/Minus
Query     1010  LDVPPRKIGSVGNSGCEGCETLVLSDELSYQTTFTATRNTMNDN  1141
                LD+    +G + +S  +    ++ +  L YQ+ F+ TRN M+++
Subject   6780  LDICSVDVGLLRDSKSDSFNIIISNQGLLYQSGFSRTRNCMHND  6911

Range 14: 6957 to 7091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 14/45(31%) 0/45(0%) Plus/Minus
Query      830  LACILTKSAGLGLYEVSLPRNTDILIWVRE*HVKTGNVINRQILI  964
                L  +  KS     YE+S      IL+ VRE  V+   ++ RQ+ +
Subject   6957  LNSLSAKSV*AATYEMSP*AIPVILVRVREKTVEPCRILTRQVFV  7091

Range 15: 6118 to 6471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 45/118(38%) 0/118(0%) Minus/Plus
Query     1366  RVKPVPFCSTQWQICCLPS*GTN*QGPSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWV  1719
                +VK  P CS QWQIC  P  G    G  +  LR M CA T     +   ++  I  +L+L+ NS      VDG C      +NL    R+  LL K  TWKI LI M L+    T WV
Subject   6118  QVKQAPSCSIQWQICFSPFSGMISMGGKRYALRVMTCALTLGSRSQTGSQIFLIKLSLKLRCNSLLRQLSVDGACVNMVYSKNLILSWRDCKLLEKQGTWKIVLITMLLKFLAHTRWV  6471

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 14

Range 1: 6094 to 6585 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.5 bits(560) 0.0 105/164(64%) 0/164(0%) Minus/Plus
Query     1256  LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  1747
                LG+FAIMRFTGEASTFLFNTMAN+LFTFLRY+L G E+I FAGDDMCANSRL++  ++  FL+ I LKAKVQF   PTFCGW L + G+FKKP L+ ER+ IARE  NLENCIDNYAIEVS AY++GE     ++  E++AHYNCVRF++ + H ++ +I  LF
Subject   6094  LGNFAIMRFTGEASTFLFNTMANILFTFLRYDLNGKEAICFAGDDMCANSRLKITNKNSKFLDKIKLKAKVQFTVTPTFCGWGLCEHGVFKKPDLVLERLQIARETRNLENCIDNYAIEVSCAYQMGENLNLYLSPHEMDAHYNCVRFIILHNHLLKSNIKDLF  6585

Range 2: 6665 to 7129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 64/155(41%) 0/155(0%) Minus/Plus
Query      755  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFEL  1219
                V+IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS +  +GF+ LFSDPYQN      AHFI   + RFG  T + L + G+N+ S   D V   + F L
Subject   6665  VLIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL  7129

Range 3: 7347 to 7601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 43/85(51%) 0/85(0%) Minus/Plus
Query      289  MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVI  543
                MPF QP +++K+V P+ IG  + LVL  L +S LP  GDNIH  PHGG Y+DGTK I+YCGP+ SFPSS L         ++I++
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSLISSGTPMIIIVILL  7601

Range 4: 7130 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 21/45(47%) 0/45(0%) Minus/Plus
Query      623  LDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSR  757
                ++ EG +IC  KE  D    H  ++KLPC+VRGATFD VT +  +
Subject   7130  VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 5: 7581 to 7631 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 11/17(65%) 0/17(0%) Minus/Plus
Query      253  LIIVIVLTASIYVLSVW  303
                +IIVI+LTA+IYV   W
Subject   7581  IIIVILLTAAIYVSERW  7631

Range 6: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/15(53%) 0/15(0%) Minus/Plus
Query      551  FYIAATRHRKKLIIM  595
                +Y+A TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 7: 6093 to 6476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 72/128(56%) 0/128(0%) Plus/Minus
Query     1365  SPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS  1748
                SP  *A +TSIA*LSMQFSR  +S A+  LS+   GFLK P      PQNVG   N TLA   I+ +     ++  +L FAH+SSPA  I S P+ SYLKKVN+I A+VLN+KVLASPVN IMAK PS
Subject   6093  SPIW*AQETSIA*LSMQFSRFRVSLAI*SLSRTKSGFLKTPCSQSPQPQNVGVTVNWTLAFSLILSKNLEFLLVIFSLEFAHMSSPAKQIASFPLRSYLKKVNSILAMVLNRKVLASPVNRIMAKLPS  6476

Range 8: 7334 to 7549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 33/72(46%) 0/72(0%) Plus/Minus
Query      341  LGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHD  556
                LGK+ LGPQ ++LLVPS * PP G   MLSP  GK   ++   T+    PI  G T+L    G  KGI + D
Subject   7334  LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILIRD  7549

Range 9: 7126 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 29/67(43%) 0/67(0%) Plus/Minus
Query      561  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNS  761
                N  LCLV+A      ++      + KVT S VAPRT QG+L S  C   KS+ S  +QI  PS S S
Subject   7126  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS  7326

Range 10: 6781 to 6975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 27/65(42%) 0/65(0%) Plus/Minus
Query      909  GSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  1103
                GSEN   KP   S DRYSS M  LP    P    L+ +P     SGTP V A  L   + +  IK
Subject   6781  GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTASILWFLIKACFIK  6975

Range 11: 6274 to 6555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 37/94(39%) 0/94(0%) Plus/Minus
Query     1286  VLISNQEPHTVVVRXXXXXXXXXXXQLTQPVGIGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQE  1567
                V++ N EPHTVV+  +           T  VG G+ N IIINAIF+V     N  S  NQ+R  K+P   ++P+T+C    EL F L+ N +Q+
Subject   6274  VIVQNDEPHTVVMSIHLMRGEVEIQIFTHLVGTGNFNSIIINAIFKVPGLPRNLKSFKNQIRLFKNPMLAKSPTTECWSYSELDFGLQFNLVQK  6555

Range 12: 6094 to 6240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 21/49(43%) 0/49(0%) Plus/Minus
Query     1601  VCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKRPK  1747
                VC H+I  + N L   + +P +G+ +I H +E K  GFT +SHYGK  K
Subject   6094  VCTHVITSETNCLLSVKVIPQKGE*YISHGIE*KSAGFTSESHYGKITK  6240

Range 13: 6296 to 6475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 25/60(42%) 0/60(0%) Minus/Plus
Query     1366  RLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWV  1545
                R K +S    H V G  +  G L++   F ++F L  +  T KIALIIM L+ P+PT WV
Subject   6296  RPKSSSL*LQHSVVGDFASMGFLKSRIWFLKDFKLRGRPGTLKIALIIMLLKFPVPTRWV  6475

Range 14: 6096 to 6185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 14/30(47%) 0/30(0%) Minus/Plus
Query     1656  WVFCHNEIYG*SQYLFVQHNGKYVVYLLKV  1745
                W FCHN I+ *SQ+  +Q++G Y ++L +V
Subject   6096  W*FCHNAIHW*SQHFSIQYHG*YTIHLFEV  6185

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 14

Range 1: 5573 to 6064 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.7 bits(602) 0.0 108/164(66%) 0/164(0%) Minus/Plus
Query     1256  LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  1747
                LG+F+IMRFTGEASTFLFNTMANMLFTFLRYEL GSE+I FAGDDMC+N RLR+  +HEGFL+ + LKAKVQF   PTFCGW L  +GIFK+PQL+ ER+C+ARE  NL NC+D+YAIEV YA+ LGE  ++ M+EE ++ HYNCVRF+V++ H ++ S+  LF
Subject   5573  LGNFSIMRFTGEASTFLFNTMANMLFTFLRYELNGSEAICFAGDDMCSNRRLRVSNKHEGFLSKLRLKAKVQFTVKPTFCGWNLCLDGIFKRPQLVLERLCVAREKDNLANCLDSYAIEVGYAFALGEKVLQYMDEEAMQNHYNCVRFIVKHSHLLKSSVRDLF  6064

Range 2: 6840 to 7091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 41/84(49%) 0/84(0%) Minus/Plus
Query      277  PANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTA  528
                P +  + + P+ IGLG+G+V+  L +S LP  GDNIH  PHGG Y DGTK I+YCGP+ SFPSS LF      A  ++V+++ A
Subject   6840  PPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISYCGPKNSFPSSNLFKGGAFSAICVVVLLVFA  7091

Range 3: 6365 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 44/119(37%) 0/119(0%) Minus/Plus
Query      620  INILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFELDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSRD  976
                + I+DEY+  D   G    F+DP Q      +AHF   +T RFG+ TC  L        S   D++I    F  D+EG ++C+ KE  DL   H +D+K  C++RG+TFD+VT + + D
Subject   6365  LKIIDEYIGQDLPEGTTFCFADPNQFPYTCPDAHFTCYQTKRFGDQTCALLGKIDCAAFSYKQDQIIFDKLFAGDIEGQIVCYEKEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD  6721

Range 4: 6122 to 6337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 32/72(44%) 0/72(0%) Minus/Plus
Query     1001  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYS  1216
                ++M+ +   L    ++     + FP++VH V G+GKS+LIRE+I  D  F AFT GVPD  NLSG  IK  S
Subject   6122  LVMDFVYDKLIDAGYIRTRLPISFPIIVHCVAGAGKSTLIREIIEVDHKFEAFTYGVPDPINLSGVRIKSNS  6337

Range 5: 7111 to 7257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 16/49(33%) 0/49(0%) Minus/Plus
Query       96  LVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVK  242
                L+G + A + +  +   N   +GCLI  +GES++I+NC  +    + VK
Subject   7111  LIGLIAALVAVVLLHMLNSGQEGCLIIISGESVVIKNCVYTSEFINLVK  7257

Range 6: 5572 to 6033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.5 bits(368) 0.0 88/154(57%) 0/154(0%) Plus/Minus
Query     1287  CLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS  1748
                C  LT N TQL*    +SS I     SP   A* TSIA* S Q +RL  S A Q LS+ + G LKIPS ++ HPQNVG   N TLA    + R PSC   +L+L F HISSPA  + S+P+SSYLKKVNN+FAIVLNKKVLASPVNL++ K PS
Subject   5572  CECLTMNLTQL*WFCMASSSIYCKTFSPKAKA*PTSIA*ESRQLARLSFSLATQSLSKTSWGRLKIPSRHRFHPQNVGLTVNWTLAFNLSLLRNPSCLFDTLSLRFEHISSPAKHMASEPLSSYLKKVNNMFAIVLNKKVLASPVNLMIEKFPS  6033

Range 7: 6839 to 7027 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 28/63(44%) 0/63(0%) Plus/Minus
Query      341  LGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAG  529
                LGK   GPQ ++L VPS * PPCG   +LSP  G  D +R   T P P+P+  G   L    G
Subject   6839  LGKLFFGPQ*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIGNKTLVLSGG  7027

Range 8: 6235 to 6327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 19/31(61%) 0/31(0%) Plus/Minus
Query     1011  LMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  1103
                L+  PERL  SGTP VKA  L S+ M SLIK
Subject   6235  LILTPERLIGSGTP*VKASNLWSTSMISLIK  6327

Range 9: 5573 to 5938 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 42/122(34%) 0/122(0%) Plus/Minus
Query     1382  IGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKRPK  1747
                + +L  I +  + QV   + N     N+L   ++    Q PSTKC +  +L F L+    Q+  M    P S V AHII  +   L   +FV  E +QH+CH VEQ+    T +SH  K PK
Subject   5573  VTNLYSIGVKTVSQVVFLSCNTEPFQNKLGAFENSIKAQIPSTKCWLNCKLDFGLQPKFAQKPLMFI*HPQSPVRAHIITSEAYGL*TIEFVSQESEQHVCHRVEQESACLTSESHD*KIPK  5938

Range 10: 6197 to 6337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 16/47(34%) 0/47(0%) Plus/Minus
Query     1001  RVWLDVPPRKIGSVGNSGCEGCETLVLSDELSYQTTFTATRNTMNDN  1141
                RV L+  PR+I  V N+  EG + +V  ++    + F++  NT+N+N
Subject   6197  RVALNSYPREINRVRNTVSEGLKLVVNLNDFPD*SAFSSAGNTVNNN  6337

Range 11: 5703 to 5921 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 26/73(36%) 0/73(0%) Minus/Plus
Query     1399  MICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIM  1617
                MICA+T D*G +++M+  *     R K N   + HFVDG+C+        N F +   L  +  TW   L  M
Subject   5703  MICARTGD*GCQINMRGF*ANLG*RPKSNLQLSQHFVDGICALMEFSNAPNLFWKGSVLQERKTTWLTVLTPM  5921

Range 12: 6896 to 7021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 15/42(36%) 0/42(0%) Minus/Plus
Query      347  GAAFPKKVKFAILRGQHTSISTWRTL*GRHQKHNILWSQTVF  472
                G     KV  A  R Q+   +TW  L GR +K+ +LW++  F
Subject   6896  GYLVSNKVYIASSRRQYPQFATWWELFGRDKKNQLLWAKEQF  7021

Range 13: 5622 to 5669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 11/16(69%) 0/16(0%) Minus/Plus
Query     1651  CSTQWQICCLPS*GTN  1698
                CST+WQ CC  S* TN
Subject   5622  CSTRWQTCCSLS*DTN  5669

Range 14: 5572 to 5817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 30/82(37%) 0/82(0%) Minus/Plus
Query     1503  AWVFCHNEIYG*SQYLFVQHNGKYVVYLLKVRTDRVRVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWM  1748
                AW F ++EI+ * ++  VQH+GK+VV+ L++RT   R + +   *YV + + +   * *   E     G S I     ILWM
Subject   5572  AWEFFNHEIHW*GKHFLVQHDGKHVVHFLEIRTQWFRGHMLRW**YVLEPETEGVK*T*GVSEQT*VEGQSPIYS*ANILWM  5817

Nucleotide Sequence (426 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
426

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
155.0 826.9 29% 6.004e-55 42% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 7864 to 8097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 67/78(86%) 0/78(0%) Minus/Plus
Query        1  PEVSNQPPILSGILAKRKRVIENALSKTVDMREVLRHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIAQ  234
                PE SN PP LSGILAKRKR+IENALSKTVDMREVL+HE+VV+SPNVMDEGAIDELIRAFGESGI+ES QF+VAIDIA+
Subject   7864  PEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIAR  8097

Range 2: 7672 to 7809 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 36/46(78%) 0/46(0%) Minus/Plus
Query      289  ALASTEKEV*GGLKALGASQKVDEIDYSC*KS*MASQVGKLPGESN  426
                ALAST KEV GGLKALG S+ V+EIDY C*  *MASQ+GKLPGESN
Subject   7672  ALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESN  7809

Range 3: 7672 to 8094 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 69/141(49%) 0/141(0%) Plus/Minus
Query        4  CNIYCNVKLITL*YARLSKSTNQLIYCSLIHYIWGEYNRFMP*NFTHIHCLRECILNNSFPFGKNATKNGRLVGNFRSFLSPC*L*SLKPGFICFIRLARQLSDLTCHLTLSTTVINFINXXXXXXXXXXXXHFLLSGCKG  426
                C IY ++KL    YAR +K TNQL+YC+ IH IWG ++RF+  N  H+H L +CIL N   FGKNAT++   +  FR  LS  *L    PGF   I    +  +LTCH    T +INF N  A+P*SLQ S H L SGCKG
Subject   7672  CYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATESRWCIRTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKG  8094

Range 4: 7863 to 8093 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 59/77(77%) 0/77(0%) Plus/Minus
Query        5  AISIATLN*SLSDMPDXXXXXXXXXXXXXXXTFGESTTDSCLKTSRISTVFESAFSITLFLLARMPLRMGGWLETSG  235
                AIS+AT N +LS MPDSP ARISSSIAPSS+TFGE TT SC KTS +STVFESAFSI L  LARMPLR+GG LE SG
Subject   7863  AISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSG  8093

Range 5: 7674 to 7805 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 31/44(70%) 0/44(0%) Plus/Minus
Query      293  DSPGNFPT*LAI*LFQQL*SISSTFWLAPKAFNPPYTSFSVDAR  424
                DSPG+FP *LAI    Q *SISST  L PKAF PP TSF+VDAR
Subject   7674  DSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDAR  7805

Range 6: 7674 to 8096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 67/141(48%) 0/141(0%) Minus/Plus
Query        2  PCIH*EGSVGRVEGFRG*PKG**N*LQLLKELNGKSSRKVAWRV**SI*SQA*GFRVSKGSKSSGSFQPASHS*WHSCQKEKSY*ECTLEDSGYA*SFKA*ICCTLPKCNG*GSNR*ADSCFWRVGHIRE*SI*RCNRYCT  424
                PCIH EG  GR EGFRG*P  * N*L LL  LNGKS+ +    + *  *S A    VS  SK++G F   ++S WHSCQ ++ Y ECT +D G+   F+       PKC+G*  NR ADSC W + H  + +I*  +RY T
Subject   7674  PCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFETRNGGDFPKCHG*RCNRRADSCIW*IWHS*KRAI*CGHRYST  8096

Range 7: 7673 to 8095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 65/141(46%) 0/141(0%) Minus/Plus
Query        3  PLHPLRRKCREG*RL*GLAKRLMKLITVVERVKWQVKSESCLASLMKHMKPGLRL*S*QGLKKLRKFPTSLPFLVAFLPKGKELLRMHSRRQWICVKF*GMNLLYSPQM*WMREQ*MS*FVLLESRAYQRVINLTLQ*ILH  425
                PLHPL R+C E *RL*GLA  L KLI +V+  +WQVK  +   + M+ +KPG    S*  LK  RK        VAFLP  + L RMH +R+W   +F*       PQM WM+ Q* S*FV L + A  +  NL   *I H
Subject   7673  PLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVLMHHLLSVAFLPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*H  8095

Range 8: 7727 to 8095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 52/123(42%) 0/123(0%) Plus/Minus
Query        3  VQYLLQR*IDHSLICPTLQKHESAXXXXXXXXXXGRVQQIHALKLHAYPLSSRVHSQ*LFSFWQECH*EWEAGWKLPELFEPLLTLKP*AWLHMLH*TRQATFRLDLPFNSFNNCNQFHQPFG  371
                V YL    I    +C   Q HESA LL  HP HLG+       K  + P S +VHS *    WQECH*E      LP  FE  LT    A L   H   +   + DLPF+ FNN NQF Q  G
Subject   7727  VLYLWPHQIARFQLCQIHQMHESARLLHLHP*HLGKSPPFRVSKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG  8095

Nucleotide Sequence (714 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
72
144
216
288
360
432
504
576
648
714

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
424.5 1664.7 32% 5.321e-127 48% NC_001948
305.3 658.9 24% 1.986e-87 34% NC_003462
300.3 882.3 40% 6.398e-86 30% NC_009892
295.2 625.0 29% 2.081e-84 26% NC_014821
291.1 538.7 33% 2.082e-84 53% NC_012038

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 5189 to 5761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
424.5 bits(920) 0.0 183/191(96%) 0/191(0%) Plus/Plus
Query      142  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL  714
                WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYE TQQFFDEHRGG GEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN  MFHEAVQEFEAKKASKSAATIENH+GRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL
Subject   5189  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL  5761

Range 2: 5081 to 5137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 19/19(100%) 0/19(0%) Plus/Plus
Query       34  REEKLCGDPWLKVMLFLGQ  90
                REEKLCGDPWLKVMLFLGQ
Subject   5081  REEKLCGDPWLKVMLFLGQ  5137

Range 3: 5188 to 5760 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
321.4 bits(695) 0.0 149/191(78%) 0/191(0%) Minus/Minus
Query      141  KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTAS*NILTLWLAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLNH  713
                +TAC KQA+VCPALATL+LLSN VQC DF+KI+ATS++QS HDLP *FS+VAALLLAFFASNSCTAS*N++ L LAFNG  DRK S++NFP G ARLS AAST GFEN +RFRTA++KV+ES PLCLG*MLS  S ALL+CSP+PPLCSSKNC*V+S P RTSRYSFKAI PTHLALVDSRLLKGM VLNH
Subject   5188  RTACWKQARVCPALATLSLLSNLVQCCDFIKIRATSNNQSLHDLPA*FSIVAALLLAFFASNSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH  5760

Range 4: 5083 to 5133 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 14/17(82%) 0/17(0%) Minus/Minus
Query       36  PKKSITFSHGSPHSFSS  86
                P+KSITF+HGSPH+FSS
Subject   5083  PRKSITFNHGSPHNFSS  5133

Range 5: 5084 to 5761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.8 bits(482) 0.0 120/226(53%) 0/226(0%) Minus/Minus
Query       37  QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCSTFASXXXXXXXXXXXXHTDIVASIQWDF**ESVEQEFSVRLCTP*LRSFHLWL*KLQAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEPFFI*TLRLELFNFTVFILA*EKHNF*PRITTQLFL  714
                QNS+L+A + LPS S+   +VKF T+L  H+NQSNI* PIP *P  +I   C T  SLL LKLL+  MKH  I+   QWDF *E +  EF +    P   SF+L L K +  SD H++   +I+ M  +NA K LT IAQLLT + P+ I+ELLS  I T +L ILFQ HF +P  PG*LQI QG V F+PFFI*   L LFNFT+ IL  EKHNF*P +TT L L
Subject   5084  QNSMLEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLL  5761

Range 6: 5086 to 5757 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.0 bits(428) 0.0 111/224(50%) 0/224(0%) Plus/Plus
Query       39  GKAVW*SVAKSYAFLRPG*RL*S*RARV*VFK*RMVQNTHTLEQSGVNQG*MGWENGFERVS*GTVWV*DNSAILR*TQGGHG*AIEQCL*AF*EHLS*T*G**LHHFFDGRPKTLEVFKATGGSCEAKACKALRKIPARHFPIKSPIEC*PQCQYVS*GSAGV*GKEG*QKCCNH*KSLRQVMSGLAARCCFDFHEIPTLYKI*Q*IKGG*GWANFGLLSTRC  710
                G+ +W* + KSYAF    * L*S*R  V + K*RMV N H LE SGVNQG +G  NG ERVS G +W+*++S IL *  G + *A EQC+*  *+HL   *  * ++   G PK  ++F+A G SC+ +A + + +I  R FPI++PIE      +VS*   GV*G+EG* +C N+ +S R VM GL  RCC DF+E+ TLY I*Q     * WAN  LL T C
Subject   5086  GEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLPTCC  5757

Range 7: 5085 to 5531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.9 bits(323) 0.0 72/149(48%) 0/149(0%) Minus/Minus
Query       38  SMGLLIGKCRAGIFRKALHALASQLPPVALKTSSVFGRPSKK*WSHYPYV*DKCSQNAHKHCSIAHPCPPCVHRRIAELSHTHTVPHDTLSKPFSQPI*PWLTPDCSRVCVF*TILHLNTQTRALQLHSLHPGLRKA*LLATDHHTAFP  484
                SMG  IGK    I      A   QL P A K    FG+P  +  +H+ Y   KC Q +H HCS+AH   P  H+RI E  H H  P DTLS+PF  P  PWLTPD SR C F*TILHL+  T +LQLH+ H    KA*LL   HH   P
Subject   5085  SMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSP  5531

Range 8: 5553 to 5759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 37/69(54%) 0/69(0%) Minus/Minus
Query      506  KQRVESRPKFAQP*PPLIYCQILYNVGIS*KSKQHLAANPDMTCLSDFQWLQHFC*PSLPQTPALPHET  712
                +Q V S+  FAQ *     CQI Y+V  S*KS+QHL  NP MT L D   L H  *PS PQTP   HET
Subject   5553  EQHVGSKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLITNPCMTYLHDSL*LLHSY*PSSPQTPVPLHET  5759

Range 9: 5085 to 5759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 117/225(52%) 0/225(0%) Plus/Plus
Query       38  RKSCVVIRG*KLCFS*ARMKTXXXXXXXXXXQMKNGSKHTYP*AIWSQPGLDGLGKWL*KSIVRYGVGMRQLSNSSMNTGGAWVSN*AMLVSVLRAFILDIRVMTPSLF*WPSENA*SFQSHRWKLRS*GVQSLTENSCSTLSYQKSH*MLATMSVCFMRQCRSLRQRRLAKVLQPLKITQAGHVGIGC*MLL*FS*NPNIVQNLTID*GWLRLGKLWPAFNTLF  712
                R+S VV  G*KLCFS  +M+ VKLK  S + QMKNG K T P* IWSQPG  G  KW *KSI R  V M+ L+NS M+ G   VSN*AM V  L+AF   I+ M      W SE+  +F+S R KL +*G  +   NS   LSY KSH*    +  CFM++ RSLR+RRL +V Q  +I Q GH GIG *MLL*F *+ N V NLT     L+LGK   A N LF
Subject   5085  RRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMKRYRSLRRRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTVLNLTTGLE*LKLGKPLLASNMLF  5759

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 6

Range 1: 5238 to 5810 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.3 bits(660) 0.0 131/191(69%) 0/191(0%) Plus/Plus
Query      142  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL  714
                WFKTHIP+ +LE+ RA+WV K+  +E RE R G  TT+QF D+H    G++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VPLN+SH+  M  EAV  FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL
Subject   5238  WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVL  5810

Range 2: 5130 to 5186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 14/19(74%) 0/19(0%) Plus/Plus
Query       34  REEKLCGDPWLKVMLFLGQ  90
                RE KL GDPWLK  +FLGQ
Subject   5130  REAKLVGDPWLKTKIFLGQ  5186

Range 3: 5240 to 5809 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 108/190(57%) 0/190(0%) Minus/Minus
Query      144  KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTAS*NILTLWLAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLN  713
                +T C*KQA+VCPALA LNLLSN VQ WDFMK+ A S+ QS  DLPE*FS+VA L   FF+S + TAS  I +  L F GT  RKVSSRN P G A  SFA S  G E    F TAI+ V  S+PLCLG + S RS AL+N  P   L SS NC VV  P R S  S +    TH AL  SRL+ GMCVLN
Subject   5240  RTEC*KQARVCPALALLNLLSNLVQSWDFMKMSALSTGQSSQDLPE*FSIVAILFDNFFSSKA*TASCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVNS*PRFLL*SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN  5809

Range 4: 5132 to 5182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 9/17(53%) 0/17(0%) Minus/Minus
Query       36  PKKSITFSHGSPHSFSS  86
                P+K + F+HGSP S +S
Subject   5132  PRKILVFNHGSPTSLAS  5182

Range 5: 5646 to 5810 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 25/55(45%) 0/55(0%) Minus/Minus
Query      550  QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCSTF  714
                +N +LKA +SL S   P  +VKF   LG HE++  I  PI T P+ VI N   TF
Subject   5646  KN*MLKASKSLSSFGTPEPVVKFGAKLGLHEDECFIHWPIFTRPSRVILNCGHTF  5810

Range 6: 5238 to 5483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 28/82(34%) 0/82(0%) Minus/Minus
Query      142  QAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEP  387
                Q+  + H+K   +  LM  + +   L+ I+ LLT    V I ELLSC +    L IL ++ F NP S   L+     V  EP
Subject   5238  QSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEP  5483

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 11

Range 1: 5087 to 5659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
300.3 bits(649) 0.0 129/191(68%) 0/191(0%) Plus/Plus
Query      142  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL  714
                WFKTHIP+  LE+ RARWV K+  KE RE R G+E T+QF DEH    G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +PL   H+  +  +AV +FE KK SKSAATIENHSGRS RDW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL
Subject   5087  WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVL  5659

Range 2: 4979 to 5035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 14/19(74%) 0/19(0%) Plus/Plus
Query       34  REEKLCGDPWLKVMLFLGQ  90
                RE KL GDPWLK  +FLGQ
Subject   4979  REPKLSGDPWLKTAIFLGQ  5035

Range 3: 5089 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 59/112(53%) 0/112(0%) Minus/Minus
Query      144  GTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLN  479
                G + RKV  RN P G A L+ A S  G+E    F TAI+ V ES+PLCLG*++S  S AL+ C P   LCSS NC V S P   S  SF +I  THLAL  SR   GMCVLN
Subject   5089  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN  5424

Range 4: 5461 to 5658 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 46/66(70%) 0/66(0%) Minus/Minus
Query      516  KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTA  713
                KT C*KQAKVCPA A  N LSN VQ WDFMKI A S+ QS  + PE FSMVAALLL+FF+S S TA
Subject   5461  KTEC*KQAKVCPAFALRNRLSNLVQSWDFMKISALSTGQSLLERPEWFSMVAALLLSFFSSKSLTA  5658

Range 5: 4994 to 5413 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 42/140(30%) 0/140(0%) Minus/Minus
Query       49  *ESVEQEFSVRLCTP*LRSFHLWL*KLQAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEPFFI*TLRLELFNFTVFILA*EKHNF*PRITT  468
                *E +++EF+    +P*  +F+ WL + + F + H + D V  LM RIN+    + +  L      +F+++LLS L+  P L+     +F +P  P  L+     V FEP F+           V++L  +  +F P ITT
Subject   4994  *EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT  5413

Range 6: 5492 to 5659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 29/56(52%) 0/56(0%) Minus/Minus
Query      547  QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCSTFA  714
                Q+ VLK  Q LPSL     IVK    LGFHEN   +  PIP    *++FNGCST A
Subject   5492  QDRVLKTSQGLPSLCTSKPIVKLSAELGFHEN*CFVDWPIPARTP*MVFNGCSTLA  5659

Range 7: 5494 to 5655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 29/54(54%) 0/54(0%) Plus/Plus
Query      549  QKCCNH*KSLRQVMSGLAARCCFDFHEIPTLYKI*Q*IKGG*GWANFGLLSTRC  710
                Q+CCNH*K  R    GLA+R   +FHEIPTL+ +*Q +    GWAN GL S  C
Subject   5494  QECCNH*KPFRAF*QGLASRQSTNFHEIPTLH*V*QSVSKCKGWANLGLFSALC  5655

Range 8: 5082 to 5216 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 17/45(38%) 0/45(0%) Plus/Plus
Query      137  KNGSKHTYP*AIWSQPGLDGLGKWL*KSIVRYGVGMRQLSNSSMN  271
                K GSK T+   +    G  G  K+L + +   G+ MR LSN S N
Subject   5082  KIGSKRTFQFFLLRLLGQGGCIKYLQRKLESLGLVMR*LSNLSTN  5216

Range 9: 5475 to 5654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 31/60(52%) 0/60(0%) Plus/Plus
Query      530  LRQRRLAKVLQPLKITQAGHVGIGC*MLL*FS*NPNIVQNLTID*GWLRLGKLWPAFNTL  709
                L++R  A+VLQPLK  Q    GIG     *FS*NPN   +LTI     RLGK W  F+TL
Subject   5475  LKRRNSARVLQPLKTIQGVLAGIGQSTKH*FS*NPNSALSLTIGFEVQRLGKPWLVFSTL  5654

Range 10: 5484 to 5600 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 21/39(54%) 0/39(0%) Minus/Minus
Query      539  CQILYNVGIS*KSKQHLAANPDMTCLSDFQWLQHFC*PS  655
                CQ    VGIS*K      ANP    L+ FQWLQH C* S
Subject   5484  CQT*CRVGIS*KLVLCRLANPC*NALNGFQWLQHSC*VS  5600

Range 11: 5619 to 5657 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 7/13(54%) 0/13(0%) Minus/Minus
Query      674  KQRVESRPKFAQP  712
                +Q  E++P+FAQP
Subject   5619  RQSAENKPRFAQP  5657

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 6

Range 1: 5242 to 5814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.2 bits(638) 0.0 127/191(66%) 0/191(0%) Plus/Plus
Query      142  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL  714
                WFKTH+P+  LE+ RA+WV ++  KE RE R G  TT+QF DEH    G +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VPL+  H+  M   AV  FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL
Subject   5242  WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAVHAFEEKKLSKSMATIENHSGRSCEDWPIDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVL  5814

Range 2: 5134 to 5190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 14/19(74%) 0/19(0%) Plus/Plus
Query       34  REEKLCGDPWLKVMLFLGQ  90
                RE KL GDPWLK  +FLGQ
Subject   5134  REAKLVGDPWLKTKIFLGQ  5190

Range 3: 5244 to 5813 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 103/190(54%) 0/190(0%) Minus/Minus
Query      144  KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTAS*NILTLWLAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLN  713
                KT C*KQAKVCPALA  NLLSNFV   DFM IKA S  QS  + PE FS+VA L  +FF+S + TA+  I  L L   GT  +KVS RNFP G A L+ A S  G E    F TAIK V  S+PLCLG*M S  S AL++ SP+  LCSS NC VV  P R SR S  +   TH AL  S  + G  VLN
Subject   5244  KTEC*KQAKVCPALALRNLLSNFVHN*DFMNIKALSIGQSSQERPEWFSIVAILFESFFSSKA*TANSIISLLCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN  5813

Range 4: 5124 to 5189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 11/22(50%) 0/22(0%) Minus/Minus
Query       24  WPKKSITFSHGSPHSFSSRHTS  89
                WP+K + F+ GSP S +SR  S
Subject   5124  WPRKILVFNQGSPTSLASRTPS  5189

Range 5: 5125 to 5589 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 40/155(26%) 0/155(0%) Minus/Minus
Query       25  SIQWDF**ESVEQEFSVRLCTP*LRSFHLWL*KLQAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEPFFI*TLRLELFNFTVFILA*EKHNF*PRITTQLFLSSHL  489
                +IQ D   + ++++FS     P    F  W  +   F   H +  G+ +LMS +N     + + +       VFI EL    +P    +IL      +P SP  L+    ++  EP        ++  F V+ LA E  + *P I+    LS+ L
Subject   5125  AIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGISN*FSLSNAL  5589

Range 6: 5653 to 5814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 22/54(41%) 0/54(0%) Minus/Minus
Query      553  QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCST  714
                Q+ +LKA  SL  L    S+VKF   L  HE QS I  PI T    ++ N   T
Subject   5653  QDRMLKAS*SLSGLGTSESVVKFRAQLRLHEYQSFIDWPILTGTTRMVLNSGHT  5814

Helleborus net necrosis virus, complete genome

Sequence ID: Length: 8542 Number of Matches: 5

Range 1: 4568 to 5140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.1 bits(629) 0.0 126/191(66%) 0/191(0%) Plus/Plus
Query      142  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL  714
                WFKTH+PL  +ES RA WV     KE REVR GY  + QF DEH    G+ L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL  A+ YGK+LLD FL  VPL A HN      +V++FE KK SKSAATIENHSGRSCRDWL DV LIFMKSQ CTKFDNR RVAKA Q++ CFQH+VL
Subject   4568  WFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQHSVL  5140

Range 2: 4460 to 4516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 15/19(79%) 0/19(0%) Plus/Plus
Query       34  REEKLCGDPWLKVMLFLGQ  90
                RE+KL GDPWLK M+FLGQ
Subject   4460  REDKLAGDPWLKTMVFLGQ  4516

Range 3: 4567 to 4914 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 61/116(53%) 0/116(0%) Minus/Minus
Query      141  AFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLNH  488
                AFNGT  +K+SSR FP*  A  S A ST G EN KRF TAI+KV  SL LCLG*M SKRS A ++  P+   CSS N  +   P RTS +SF   F T  A   S   +G  VLNH
Subject   4567  AFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH  4914

Range 4: 4945 to 5136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 40/64(62%) 0/64(0%) Minus/Minus
Query      519  TAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCT  710
                T C KQ   C ALAT NLLSN VQ WDF+ I  TS+SQS  + PE FS+VAALLL FF+S S T
Subject   4945  TECWKQTIDCAALATRNLLSNLVQIWDFINISPTSASQSLQERPEWFSIVAALLLVFFSSKSLT  5136

Range 5: 4462 to 4515 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 10/18(56%) 0/18(0%) Minus/Minus
Query       36  WPKKSITFSHGSPHSFSS  89
                WP+ +I F+ GSP S SS
Subject   4462  WPRNTIVFNQGSPASLSS  4515

Nucleotide Sequence (1006 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
101
202
303
404
505
606
707
808
909
1006

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
358.9 1555.1 36% 4.315e-98 32% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 15

Range 1: 7582 to 8118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
358.9 bits(777) 0.0 157/179(88%) 0/179(0%) Minus/Plus
Query      223  HVDSNDGDHQGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HC*MASPPGKLPGESNEAFEARLKSLELARAQKQPTGSNQPPTLGGVLAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIARHCSVVGS  759
                HVDS+ G+HQGC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS   EEIDYHC*  *MAS  GKLPGESNEAFEARLKSLELARAQKQP GSN PPTL G+LAKRKR+IENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI+ES QF+VAIDIARHCS VGS
Subject   7582  HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGS  8118

Range 2: 7770 to 8120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.3 bits(409) 0.0 89/117(76%) 0/117(0%) Plus/Minus
Query      221  KLPTTEQWRAISIATLN*SLSDMPDSPNARINSSIAPSSMTFGDSTTDSCFNTSRMSTVFERAFSITLFLLARTPPRVGGWLEPVGCF*ALASSKDFSLASKASFDSPGNFPGGLAI  571
                +LPT+EQ RAIS+AT N +LS MPDSPNARI+SSIAPSSMTFG+ TT SCF TS MSTVFE AFSI L  LAR P RVGG LEP GCF*ALA+S DFS ASKASFDSPG+FP  LAI
Subject   7770  ELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAI  8120

Range 3: 7584 to 7727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 38/48(79%) 0/48(0%) Plus/Minus
Query      614  LTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP**SPSLLST  757
                LTPKAFKPP+TS TV+A ASLGPQFSI IDSPVALM+QP   P LLST
Subject   7584  LTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST  7727

Range 4: 7469 to 7543 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 15/25(60%) 0/25(0%) Plus/Minus
Query      798  PEFQTDSTYMEAVKTITIIKGTRQS  872
                PEFQTD+T M A++ +T IKGT+ S
Subject   7469  PEFQTDNTCMNAIRPMTSIKGTKFS  7543

Range 5: 7516 to 7842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 57/109(52%) 0/109(0%) Plus/Minus
Query      499  LQRFQSGLKSFI*LTRQLSWWARHLTMSTMIINFFTNMANP*SLQTP*HFLNC*SERLTWATIFN*Y*LPSGSYETTLMITIIAVYMCKD*GCNYNAY*NQNSKQIVHI  825
                LQRF  G KS I* T +      H    TMIINFF + ANP*SLQT  H L+   + LTWA +FN  *L SG  E TL++   AVYM KD   NYN+Y +QNSKQ +H+
Subject   7516  LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV  7842

Range 6: 7891 to 8124 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 44/78(56%) 0/78(0%) Plus/Minus
Query      217  LQAANNRTMACNIYCNVKLITL*YARLTECSNQLIYCTFIHDIWR*HNRFMLQHLSHVHSF*KSILNNPLSFSKDTTK  450
                L A N R + C IY ++KL    YAR T+C+NQL+YCTFIHDIW  H+RF+ Q+L HVH  *K IL NPL+F K+ T+
Subject   7891  LGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATE  8124

Range 7: 7479 to 7970 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 90/164(55%) 0/164(0%) Minus/Plus
Query      371  VPLIIVIVLTASIYVLSVWNSGSSXXXXXXXXXXXXRQQ*W*SSRLSHKSHWGVNIN*KLWPK*GARFNS*GSVRGFEGFRG*PYW*RNXXXXXXXLDGEPTRKVAG*VK*SF*GQTEIFGAGKGSKAAYWF*PTSYPWWCPC*KKEGY*ECSFKNCGHARGVE  862
                VPL++VI L A I+VLSVWNSG  R CNC+PNPC+CRQQ*W   RL H  HW VN +*KL PK*G   +  G    FEGFRG*P  *RN*LSLL  L+G+   +   *+K* F*   +I G    SKAA  F* T+Y  W  C  +E Y EC+FK+ GH  G E
Subject   7479  VPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFE  7970

Range 8: 7995 to 8114 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 23/40(57%) 0/40(0%) Minus/Plus
Query      227  KCHG*RCNR*VDSSIR*VWHIRE*SI*RCNRYCTPLFCCW  346
                KCHG*RCNR  DS I *+WH  + +I*  +RY T L  CW
Subject   7995  KCHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW  8114

Range 9: 7514 to 7843 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 60/110(55%) 0/110(0%) Minus/Plus
Query      498  HICTICLEFWF**AL*LQP*SLHM*TAMMVIIKVVS*EPLGSQY*LKIVAQVRRSLQQLRKC*GV*RL*GLAXXXXXXXXXXXXVRWRAHQESCRVSQMKLLRPD*NLWS  827
                H C +CLEFW  * L*L   SL M*TA++   KV S  PL SQ+*LK  AQVR      R+C  V*RL*GLA+L+KKLIIIV +  W+    +  V+QM+LL+P *N WS
Subject   7514  HTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS  7843

Range 10: 7916 to 8074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 29/53(55%) 0/53(0%) Minus/Plus
Query      267  RGLLRMLFQKLWTCERC*SMNLLCYLQMSWMKVQ*MS*FEHSVSLAYQRVINL  425
                RGL RM FQ+ WT  R *+     + QMSWMKVQ* S*F H V+LA  +  NL
Subject   7916  RGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNL  8074

Range 11: 7628 to 7969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 55/114(48%) 0/114(0%) Plus/Minus
Query      372  STPLACPQFLKEHSQ*PSFF*QGHHQG*EVG*NQ*AAFEPLPAPKISVWPQKLHLTHPATFLVGSPSNNVNNDNQFLHQYG*PLKPSNPLTLP*LLKRAPHLGHNFQLILTPQW  713
                S P +CP  LK HS * S   Q  H  * V *N  AAFE    P I    QK HL H        P +  NNDNQFL Q+G*PLKPSN    P    + PHLG +FQ  LT QW
Subject   7628  SKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQW  7969

Range 12: 8027 to 8167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 15/47(32%) 0/47(0%) Plus/Minus
Query      174  CKNSQLESNSHASNPPSCQQQNNGVQYLLQR*IDHSLICQTHRMLES  314
                C   +++S        S Q Q++ V YL    I    +CQ H+M ES
Subject   8027  CLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES  8167

Range 13: 7425 to 7571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 31/49(63%) 0/49(0%) Plus/Plus
Query      858  GTRQSFPNTGLYGQSQNIVPLIIVIVLTASIYVLSVWNSGSSRRCNCNP  1004
                G +QSFP++G++GQS+N VPL++VI L A I+VLSVWNSG  R CNC+P
Subject   7425  GPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHP  7571

Range 14: 7409 to 7570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 25/54(46%) 0/54(0%) Minus/Minus
Query      842  GLQLHRLLEPEFQTDSTYMEAVKTITIIRGTMF*D*P*SPVFGNDCLVPLIIVI  1003
                G QL  L  PEFQTD+T M A++ +T I+GT F D P  P  G DC  P  +++
Subject   7409  GWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VIL  7570

Range 15: 7430 to 7543 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 16/38(42%) 0/38(0%) Plus/Plus
Query      863  KTVIPKHWALWSVSEHCASNNCNSFNSLHICTICLEFW  976
                K ++P+ W +  + E CA N C+  N +H C +CLEFW
Subject   7430  KAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFW  7543

Nucleotide Sequence (613 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
62
124
186
248
310
372
434
496
558
613

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
374.5 1985.9 22% 5.309e-111 62% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 12

Range 1: 7582 to 8040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.1 bits(642) 0.0 144/153(94%) 0/153(0%) Minus/Plus
Query        1  HVDSSSGDHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHTVEEIDYHC*IG*MASQIGKLPGESNEAFXXXXXXXXXXXXXXQPEGSNTSPTLSGVLAKRKRVIENALSKSVDMREVLKHETVVISPNVMDEGAIDELIRAF  459
                HVDSSSG+HQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVS  VEEIDYHC*IG*MASQIGKLPGESNEAFEARLK+LELARAQKQPEGSN  PTLSG+LAKRKR+IENALSK+VDMREVLKHETVVISPNVMDEGAIDELIRAF
Subject   7582  HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAF  8040

Range 2: 7428 to 7574 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 49/49(100%) 0/49(0%) Minus/Plus
Query      467  PKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPN  613
                PKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPN
Subject   7428  PKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPN  7574

Range 3: 7433 to 8035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
374.5 bits(811) 0.0 156/201(78%) 0/201(0%) Plus/Minus
Query        6  HESAHLLLPHP*HSGKSPQFRVSTPPSCPLILRVHFRSPSYAWQAHH*E*VTYWNLLAVFGLELTPELLTGPRMPHLTHPGVSQFDLPFSQFNNDNQFLQQYG*PLKPSNLPTLPSQWMQGPHLGHNFQSKLIRQWP**NNLGDRRYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPITSIKGTKFSDCPNIPELGKDC  608
                HESA LL  HP*H GKSP FRVS PPSCP  L+VH    S  WQ  H*E*V + NL A F L LTP +L G + PHL H GVSQFDLPFSQFNNDNQFLQQ+G*PLKPSNLP  PSQWMQGPHLG +FQSKL  QWP**+NLG   YCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRP+TSIKGTKFSD PNIPELGKDC
Subject   7433  HESARLLHLHP*HLGKSPPFRVSKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDC  8035

Range 4: 7438 to 7827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.9 bits(526) 0.0 103/130(79%) 0/130(0%) Plus/Minus
Query      214  PGLECLI*LTREFPNLTCHLANSTMIINFFNSMANP*SLQTSQHFLHSGCKGLTWATIFNQN*FASGPDKTTLVIAATAVYMSKDLDGNYNSYQDQNSKQIIHV*MQSDL*QALRAQSSQTAQISLSWER  603
                PG + LI* T EFPNLTCH AN TMIINFFNS ANP*SLQTSQH LHSGCKGLTWA +FNQN* +SGP++ TLV+A TAVYMSKDLDGNYNSYQDQNSKQ IHV*M+ DL*QALRAQ+SQ  +IS SW R
Subject   7438  PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGR  7827

Range 5: 7860 to 8000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 40/47(85%) 0/47(0%) Plus/Minus
Query       41  TFGEITTVSCFNTSLMSTDFESAFSITLLRLASTPLRVGDVLEPSGC  181
                TFGEITTVSCF TSLMST FESAFSI LLRLA  PLRVG  LEPSGC
Subject   7860  TFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSGC  8000

Range 6: 7434 to 7805 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
242.5 bits(523) 0.0 107/124(86%) 0/124(0%) Plus/Minus
Query      236  DSPGSFPI*LAI*PIQQ**SISSTVWLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALIKQPW*SPLLLST*ARIWMAITIPTKTRIPNR*YMYECNQTYNKH*GHKVLRLPKYP*AGKGL  607
                DSPGSFPI*LAI PI Q**SISST  LTPKAFKPP+TSFTVDARASLGPQFSIKIDSPVAL+KQPW  PLLLST*ARIWMAITIPTKTRIPNR YMYEC+ TY+KH*GHK+LRL +YP AG+GL
Subject   7434  DSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQYMYECD*TYDKH*GHKILRLAEYPRAGEGL  7805

Range 7: 7885 to 8040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 33/52(63%) 0/52(0%) Plus/Minus
Query        1  KSTNQLIYCSLIHNIRGNHHSFVFQHLPHVH*F*ECIFDHPLTLGKHTTKSR  156
                K TNQL+YC+ IH+I GNHH FVFQ+LPHVH  *+CI  +PL  GK+ T+SR
Subject   7885  KCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATESR  8040

Range 8: 7436 to 7714 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 72/93(77%) 0/93(0%) Minus/Plus
Query      327  VLSQLRDIWAV*ELCALNACYRSDCIHTCIICLEFWSW*EL*LPSKSLLM*TAVAAITKVVLSGPLANQF*LKIVAQVRPLHPL*RKCWEV*R  605
                +L QL DI  +*E CALNAC+RS+ IHTCI+CLEFWSW*EL*LPSKSLLM*TAV A TKV   GPL +QF*LK  AQVRPLHPL*R+CWEV*R
Subject   7436  ILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*R  7714

Range 9: 7772 to 8035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 57/88(65%) 0/88(0%) Minus/Plus
Query        6  WQVKLGNSRVSQMRHSRPG*KLWS*LEPKNSQKVPIRHLLLVVCLPSVRG*SKMHSQNQWT*GRC*NTKLW*FPRMLWMREQ*MS*FV  269
                WQVKLGNS V+QMR  +PG*  WS*LE K+S+KV + HLL V  LP+ RG  +MH Q +WT*GR *NTK W*FP+M WM+ Q* S*FV
Subject   7772  WQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVLMHHLLSVAFLPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FV  8035

Range 10: 7614 to 7742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 35/43(81%) 0/43(0%) Minus/Plus
Query      299  LFYQGHWRINFD*KLWPK*GPCIHCEGSVGRFEGFRG*PYC*R  427
                L + GHWR+NFD*KL PK*GPCIHCEG  GRFEGFRG*P C*R
Subject   7614  LLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*R  7742

Range 11: 7863 to 8036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 36/58(62%) 0/58(0%) Minus/Plus
Query        5  ARRFQYVTYS*WCACQA*EGDRKCTLKISGHEGGVETRNCGDFPECYG*GSNR*ADSC  178
                A RF   TYS W +CQ  E  R+CT K  GHEGG ETRN GDFP+C+G*  NR ADSC
Subject   7863  AGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFETRNGGDFPKCHG*RCNRRADSC  8036

Range 12: 7432 to 7533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 23/34(68%) 0/34(0%) Minus/Plus
Query      508  NSPFPAQGYLGSLRTLCP*CLL*V*LHSYMYYLF  609
                ++P PA GY  +LR LCP*CL *V* HSYMY LF
Subject   7432  SNPSPALGYSANLRILCP*CLS*V*SHSYMYCLF  7533

Nucleotide Sequence (303 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
31
62
93
124
155
186
217
248
279
303

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
207.7 1087.6 53% 2.708e-53 63% NC_001948
85.4 171.4 24% 8.515e-21 52% NC_028975
65.2 117.6 30% 2.176e-20 42% NC_009892
84.9 117.1 25% 2.973e-20 52% NC_028868
86.3 167.7 24% 6.232e-21 48% NC_025388

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 8038 to 8316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
207.7 bits(447) 0.0 83/93(89%) 0/93(0%) Minus/Plus
Query        2  WAKKGFNENEKFDVAIDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF  280
                + + G  E+ +FDVAIDIARHCSDVGSSQRSTLIGKSPFC+LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF
Subject   8038  FGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF  8316

Range 2: 8049 to 8315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 75/89(84%) 0/89(0%) Plus/Minus
Query        3  NFSFSLNPFLAQLAGGIPVSKWIFHTIFA*YMQNLRSVVTSLIIPAISDLFNSQKGLLPIRVDL*ELPTSEQWRAMSIATSNFSFSLNP  269
                NFSFSLNPFLAQLAGGIPVS+W+FHTIFA*YMQNLR+VVTSLIIPAISDLF SQ GLLPIRVDL ELPTSEQ RA+S+ATSN + S  P
Subject   8049  NFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMP  8315

Range 3: 8068 to 8316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 55/83(66%) 0/83(0%) Plus/Minus
Query        2  KLFILIKSFLGPISWWYSRLQMDIPHDFCIVHAKSAQCGHLSYNSSNFRPI*LAEGAFTNQG*PLRTSHIRAVASNVYCNIKL  250
                KLFILIKSFLGP+SWWY RLQMD+PHDFCIVHAKS  CGHL YN S F  +*+ +    NQG*PL  ++IRAV   +Y +IKL
Subject   8068  KLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKL  8316

Range 4: 8070 to 8315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 53/82(65%) 0/82(0%) Minus/Plus
Query        3  V*CCNRHCSPLL*CGKFSEVNPDW*KPLLRVK*V*NCWNYKRGDHTAQILHVLCKNRVEYPFGDGNTTS*LGQERI**E*KV  248
                +*C +R+ + LL*C    EVNPDW + +L  K + N W+YK GDH   ILHVLCKNRVE+P GDG+TTS*LGQERI**E*KV
Subject   8070  I*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KV  8315

Range 5: 8072 to 8317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 52/82(63%) 0/82(0%) Plus/Minus
Query        1  QTFHSH*ILSWPN*LVVFPSPNGYSTRFLHSTCKICAVWSPLL*FQQFQTYLTRRRGFYQSGLTSENFPHQSSGEQCLLQHQ  246
                QTFHSH*ILSWP+*LVV PSP+G STRFLHSTCKI  +WSP L* Q F   L  +    QSGLTS ++ HQSS    L  HQ
Subject   8072  QTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQ  8317

Range 6: 8123 to 8317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 47/65(72%) 0/65(0%) Minus/Plus
Query        1  RGQP*LVKAPSAS*IGLKLLEL*ER*PHCADFACTMQKSCGISIWRREYHQLIGPRKDLMRMKSL  195
                RGQP*L +    +*   K L L* R*PH  DFACTMQKSCG SIWRR YHQL GPRKDLMRMKSL
Subject   8123  RGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSL  8317

Range 7: 8260 to 8316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 19/19(100%) 0/19(0%) Minus/Plus
Query      245  TGIPPANWAKKGFNENEKF  301
                TGIPPANWAKKGFNENEKF
Subject   8260  TGIPPANWAKKGFNENEKF  8316

Range 8: 8260 to 8316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 17/19(89%) 0/19(0%) Plus/Minus
Query      245  KLFILIKSFLGPISWWYSR  301
                KLFILIKSFLGP+SWWY R
Subject   8260  KLFILIKSFLGPVSWWYPR  8316

Range 9: 8259 to 8318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/20(95%) 0/20(0%) Plus/Minus
Query      243  SNFSFSLNPFLAQLAGGIPV  302
                +NFSFSLNPFLAQLAGGIPV
Subject   8259  ANFSFSLNPFLAQLAGGIPV  8318

Range 10: 8258 to 8317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/20(90%) 0/20(0%) Plus/Minus
Query      244  QTFHSH*ILSWPN*LVVFPS  303
                QTFHSH*ILSWP+*LVV PS
Subject   8258  QTFHSH*ILSWPS*LVVSPS  8317

Range 11: 8258 to 8314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 17/19(89%) 0/19(0%) Minus/Plus
Query      247  RREYHQLIGPRKDLMRMKS  303
                RR YHQL GPRKDLMRMKS
Subject   8258  RRGYHQLTGPRKDLMRMKS  8314

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 3

Range 1: 8222 to 8377 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 32/52(62%) 0/52(0%) Minus/Plus
Query        2  LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF  157
                + R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KF
Subject   8222  VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKF  8377

Range 2: 8144 to 8212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/23(52%) 0/23(0%) Minus/Plus
Query      164  DIARHCSDVGSSQRSTLIGKSPF  232
                DIAR+C+D GSS+ +  IG S +
Subject   8144  DIARYCADAGSSESTEFIGTSSY  8212

Range 3: 8227 to 8376 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 28/50(56%) 0/50(0%) Plus/Minus
Query        3  NFSFSLNPFLAQLAGGIPVSKWIFHTIFA*YMQNLRSVVTSLIIPAISDL  152
                NF FSL P      GGI V+  +FHTI A*  QNLRSVV  L+  AIS L
Subject   8227  NFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLMTAAISIL  8376

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 8549 to 8662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 22/38(58%) 0/38(0%) Minus/Plus
Query        2  TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF  115
                TLR+FC YYAK+VWN+ LET  PPA W+ KG+ +  K+
Subject   8549  TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKY  8662

Range 2: 8378 to 8533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/52(42%) 0/52(0%) Minus/Plus
Query      125  WAKKGFNENEKFDVAIDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIR  280
                + K G + ++  +V + IARHC+DVGSS +S LIG  P  ++   E+A II+
Subject   8378  FTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK  8533

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 2

Range 1: 8162 to 8317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 31/52(60%) 0/52(0%) Minus/Plus
Query        2  LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF  157
                + R EIA +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF
Subject   8162  VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKF  8317

Range 2: 8084 to 8152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 12/23(52%) 0/23(0%) Minus/Plus
Query      164  DIARHCSDVGSSQRSTLIGKSPF  232
                DIAR+C+D GSS  +  IG S +
Subject   8084  DIARYCADAGSSASTEFIGTSSY  8152

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 3

Range 1: 8207 to 8356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 33/50(66%) 0/50(0%) Minus/Plus
Query        2  RSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF  151
                R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KF
Subject   8207  RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKF  8356

Range 2: 8123 to 8191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 11/23(48%) 0/23(0%) Minus/Plus
Query      164  DIARHCSDVGSSQRSTLIGKSPF  232
                DIAR+C+D GSS+ +  +G S +
Subject   8123  DIARYCADAGSSESTEFVGTSSY  8191

Range 3: 8206 to 8355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 27/50(54%) 0/50(0%) Plus/Minus
Query        3  NFSFSLNPFLAQLAGGIPVSKWIFHTIFA*YMQNLRSVVTSLIIPAISDL  152
                NF FSL PF     GG+ V+  +F TI A*  QNL SVV  LI  AIS L
Subject   8206  NFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLITAAISIL  8355

Nucleotide Sequence (325 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
325

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
221.5 1004.8 43% 2.226e-57 74% NC_001948
77.6 106.1 26% 5.926e-17 42% NC_004667
79.9 104.3 25% 2.058e-16 45% NC_016509
84.9 84.9 20% 2.785e-16 48% NC_009087
50.1 121.9 26% 1.591e-16 46% NC_030746

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 2228 to 2515 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.5 bits(477) 0.0 88/96(92%) 0/96(0%) Minus/Plus
Query        3  DFNWVVRNIGFEDRLKGRGASFFSKPGISRYSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNLI  290
                DFNWV +NIGF+DRL+GRGASFFSKPGIS +SYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYE G KVLTVNLI
Subject   2228  DFNWVAKNIGFKDRLRGRGASFFSKPGISCHSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYEIGHKVLTVNLI  2515

Range 2: 2227 to 2514 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.8 bits(373) 0.0 76/96(79%) 0/96(0%) Minus/Plus
Query        4  GFQLGGEEYWL*R*VERQGCIILLKTRDFTL*LQWWKPYKSRVA*VHGSDSKLHRWA*LLQFMPGSNL*RKFKIGPS*G**ELL*NWAQGFNCQFN  291
                GF LGGEE+W *R  ERQGCIILLKTR+F  *LQWW+P+K RVA VHGSDSKLH W *LLQFMPGS+L* KFKIG S*G**ELL*NWAQ F+C FN
Subject   2227  GF*LGGEEHWF*RQAERQGCIILLKTRNFMS*LQWWEPHKLRVAKVHGSDSKLHWWT*LLQFMPGSDL*GKFKIGSS*G**ELL*NWAQSFDC*FN  2514

Range 3: 2229 to 2513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 73/95(77%) 0/95(0%) Minus/Plus
Query        5  ISTGW*GILALKIG*KAGVHHSSQNQGFHVIATMVEAIQV*GGLSSWIRF*APPVGVTTTIHAWLKSMKKIQNWPFIRMMRVAMKLGSRF*LSI*  289
                I TGW   L LK G*+AGVHHSSQNQ FHVI TMV A Q *GG SSWIRF*AP V V TTIHAWL+SM+KIQNW FIRMMRVAMKLG++F*L I*
Subject   2229  ILTGWRRTLVLKTG*EAGVHHSSQNQEFHVIVTMVGATQA*GGQSSWIRF*APLVDVITTIHAWLRSMRKIQNWLFIRMMRVAMKLGTKF*LLI*  2513

Range 4: 2228 to 2515 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 71/96(74%) 0/96(0%) Plus/Minus
Query        3  N*IDS*NLEPSFIATLIILMKGQF*IFFIDLSQA*IVVVTPTGGA*NLIHELRPP*TCMASTIVAIT*NPWF*EE*CTPAFQPIFKANIPHHPVEI  290
                +*I+S N  P+FIATLIILMK QF*IF IDLSQA*IVV+T T GA*NLIHEL PP* C+A TIV +T*N WF*EE*CTPA QP+FK N+  HPV+I
Subject   2228  D*INSQNFVPNFIATLIILMKSQF*IFLIDLSQA*IVVITSTSGA*NLIHELWPP*ACVAPTIVTMT*NSWF*EE*CTPASQPVFKTNVLRHPVKI  2515

Range 5: 2277 to 2516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 62/80(78%) 0/80(0%) Plus/Minus
Query        2  QLN*QLKP*AQFHSNSHHPYEGPILNFLHRFEPGMNCSSYAHRWSLESDP*T*ATLDLYGFHHCSYNVKSLVLRRMMHPC  241
                +LN*Q K  AQFHSNSHHPYE PILNF HR EPGMNCS+Y H+WSLESDP*T ATL L G HHC+Y++K LVLRRMMHPC
Subject   2277  RLN*QSKLCAQFHSNSHHPYEEPILNFPHRSEPGMNCSNYVHQWSLESDP*TLATLSLCGSHHCNYDMKFLVLRRMMHPC  2516

Range 6: 2224 to 2454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 67/77(87%) 0/77(0%) Plus/Minus
Query       64  RANFEFSS*I*ARHEL**LRPPVELRI*SMNLGHPRLVWXXXXXXXREIPGFEKNDAPLPFNLSSKPIFLTTQLKST  294
                RANFEFSS*I*ARHEL**LRPPVELRI*SMN GHP+LVWLPPL*L* EIPGFEKNDAPLP +LS KP+F  TQLKS+
Subject   2224  RANFEFSS*I*ARHEL**LRPPVELRI*SMNFGHPKLVWLPPL*L*HEIPGFEKNDAPLPLSLSLKPMFFATQLKSS  2454

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 2

Range 1: 4875 to 5072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 28/66(42%) 0/66(0%) Minus/Plus
Query        3  YSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNLI  200
                Y+YNGGSH S GWP+ ++ IL++    + ++ CL Q Y+    +  H DDE CY +   +LTVNL+
Subject   4875  YTYNGGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLV  5072

Range 2: 4818 to 4868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 12/17(71%) 0/17(0%) Minus/Plus
Query      210  FEDRLKGRGASFFSKPG  260
                F D LKGR A FFSK G
Subject   4818  FVDNLKGRSAVFFSKLG  4868

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 5357 to 5554 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 30/66(45%) 0/66(0%) Minus/Plus
Query        6  RYSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNL  203
                RY YNGGSH S GW K +D++         Y+ CL Q Y + + +  H DDE CY +G+ V+TVNL
Subject   5357  RYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNL  5554

Range 2: 5303 to 5347 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 8/15(53%) 0/15(0%) Minus/Plus
Query      216  FEDRLKGRGASFFSK  260
                F D+L+GR  +F+SK
Subject   5303  FVDKLRGRDVAFYSK  5347

Chrysanthemum virus B, complete genome

Sequence ID: Length: 8855 Number of Matches: 1

Range 1: 2281 to 2475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 31/65(48%) 0/65(0%) Minus/Plus
Query        6  YSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNL  200
                YSYNGG H SL WP ++   +   G    YN CL Q Y+EN+K+ +H DDE C+ TG  + TVN+
Subject   2281  YSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNI  2475

Senna mosaic virus isolate Brazilian, complete genome

Sequence ID: Length: 6775 Number of Matches: 3

Range 1: 1879 to 1986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 17/36(47%) 0/36(0%) Minus/Plus
Query        6  YNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNL  113
                +N CL Q YE  + +  H+D+E CY  G +VLT+NL
Subject   1879  FNQCLVQKYERGASIPFHRDNEPCYPKGHQVLTINL  1986

Range 2: 1753 to 1857 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 16/35(46%) 0/35(0%) Minus/Plus
Query      126  SFFSKPGISRYSYNGGSHTSLGWPKFMDQILSSTG  230
                ++F       YSY GGSH S GWP ++D IL++ G
Subject   1753  AYFFSKDNKPYSYTGGSHASRGWPNWLDSILATVG  1857

Range 3: 1732 to 1770 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/13(85%) 0/13(0%) Minus/Plus
Query      216  DRLKGRGASFFSK  254
                DRLKGR A FFSK
Subject   1732  DRLKGRLAYFFSK  1770

Nucleotide Sequence (388 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
388

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
276.9 1265.9 25% 6.034e-74 73% NC_001948
104.6 104.6 30% 4.351e-22 39% NC_029087
82.2 162.2 39% 4.46e-20 31% NC_018448
74.4 114.9 24% 2.125e-19 46% NC_009892
75.8 198.5 27% 1.748e-20 49% NC_005343

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 4025 to 4384 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 116/120(97%) 0/120(0%) Plus/Plus
Query       27  ILGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ  386
                + GVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK+DLEMDD CKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ
Subject   4025  LTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ  4384

Range 2: 4030 to 4386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.1 bits(557) 0.0 113/119(95%) 0/119(0%) Minus/Minus
Query       32  SWTSSKITQ*PAFRPATFLRKTSKVTTSHPSFFDLPALATLQPSSISRSLLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVSSLGLISVVDIPESQGFASLNFSSLITP  388
                +WTSSKITQ PAF PATFLRKTSKVTTSHPSFFDLPALATLQ SSISRS LIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTV+SLGLISVVDIPESQGFASLNFSSLITP
Subject   4030  NWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITP  4386

Range 3: 4034 to 4384 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 87/117(74%) 0/117(0%) Minus/Minus
Query       36  LDLIKNHTVTSLQTSNFSKEDLKSYYIPPFLL*PACLGNFAAIIHLKITFD*IR*SSSWRNKSYKFTLRPLHETFVQKTLPSPKCAKYNR*LSWLNICS*YSRKPRFCITKLFITYH  386
                LDLIKNHTV SLQ+ NFSKE+LKSYYIPPFLL*P C  NFAAIIH KI FD*I *S+S RNK Y+FTLRP HET VQ+TLPSPKC K++    WLNI S Y+RKPRFCIT+L ITY+
Subject   4034  LDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYN  4384

Range 4: 4021 to 4383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.4 bits(418) 0.0 88/121(73%) 0/121(0%) Plus/Plus
Query       23  GYTWCDK**KV**CKTLAFWNINYRY*AKRANGCTWHIWGWEEFFVQKFHEEV*G*ICNFCFSKTSFSEFNQK*S*DG*WLQSCQGRQVKEGRVGCSNF*GLP*KSCWSEGWSLCDF**GP  385
                G  W  K**+V *CKTLAFW I Y Y*AK  +   W+IWGWEEF VQ+FHE+V*G*I N CFS+T FS+FNQK*S*+G* LQSC  R VKEGRVGCSNF*G P*KSC  EGW LCDF**GP
Subject   4021  GPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GP  4383

Range 5: 4119 to 4382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 68/88(77%) 0/88(0%) Minus/Minus
Query      121  GPHQKSHSDQPSDQQLF*GRPQKLLHPTLPSLTCLPWQLCSHHPSQDHF*LNSLKLVLEKQKLQIYPQTSS*NFCTKNSSQPQMCQVQ  384
                GPHQKSHS QPS  QLF*G+PQKLLHPTLPSLT L  QLCS+HP QDHF*LN LK V EKQ+L+IYPQT S*N CT+NSSQPQM Q +
Subject   4119  GPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQAR  4382

Range 6: 4020 to 4085 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 16/22(73%) 0/22(0%) Minus/Minus
Query       22  IFQKAKVLHH*TFHHLSHQVYP  87
                I+QKAKVLHH*T HHL  Q+ P
Subject   4020  IYQKAKVLHH*TSHHL*RQLGP  4085

Range 7: 4038 to 4190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 37/51(73%) 0/51(0%) Plus/Plus
Query       40  *VMKSLVMQNLGFLEYQLQILSQES*RLYLAHLGLGRVFCTKVS*RGLRVN  192
                *VM+S VMQNLGFL Y L ILSQ +*   L HLGLGRV CT+VS*+GLRVN
Subject   4038  *VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN  4190

Range 8: 4224 to 4307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 21/28(75%) 0/28(0%) Plus/Plus
Query      226  RIQSKVILRWMMAAKLPRQAGQRRKGGM  309
                +IQSK+IL+WM+AAKL +Q GQRRKGGM
Subject   4224  QIQSKMILKWMIAAKLLKQVGQRRKGGM  4307

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 1

Range 1: 3571 to 3924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 46/118(39%) 0/118(0%) Plus/Plus
Query       33  GVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ  386
                G IS   ++D       +  +    R L V+LGTFGAGKS L+K FM  ++G+ +T+VSPRR LA    SD+++D   +     +++ + W V TFE FL +   ++ G  VI DEVQ
Subject   3571  GAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQ  3924

Sweet potato virus C-6, complete genome

Sequence ID: Length: 8857 Number of Matches: 3

Range 1: 3555 to 3776 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 36/74(49%) 0/74(0%) Plus/Plus
Query       27  ILGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDL  248
                + G IS   F D    +      D   RE+T +LGTFGAGKS+L+K FM ++ GK + F+SPRRALAN IK D+
Subject   3555  VTGAISSNLFHDQGNLIEQSINPDGVEREITWILGTFGAGKSYLFKKFMVQNPGKEIIFISPRRALANEIKRDV  3776

Range 2: 3798 to 3923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 13/42(31%) 0/42(0%) Plus/Plus
Query      261  GCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ  386
                G K+    +   + W ++TFE  +     +K+  C+I DEVQ
Subject   3798  GEKLQSKVKELSKNWSIMTFETAILSANRIKSTSCIILDEVQ  3923

Range 3: 3635 to 3784 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 23/50(46%) 0/50(0%) Minus/Minus
Query      107  SISRSLLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVSSL  256
                + + SLLI  A+A LGE  + +LP    M  L + LFPAP VP   V SL
Subject   3635  AFATSLLISLARALLGEINMISLPGF*TMNFLKR*LFPAPKVPRIHVISL  3784

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 3998 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 31/67(46%) 0/67(0%) Plus/Plus
Query       96  DIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKK  296
                +I  R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K    G+  K
Subject   3998  NIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 2: 4208 to 4285 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 15/26(58%) 0/26(0%) Plus/Plus
Query      309  VVTFEVFLRKVAGLKAGHCVIFDEVQ  386
                V+TFE+FL  +A +K GH VI DE+Q
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQ  4285

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 4

Range 1: 3586 to 3780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 32/65(49%) 0/65(0%) Plus/Plus
Query      108  RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKKEG  302
                RE+T VLGTFGAGKS L+K F+ +S G+ VTFVSPR+ALA ++K+++  +      K    K++G
Subject   3586  REVTAVLGTFGAGKSRLFKEFISKSPGRCVTFVSPRKALAEAVKTEIFGESREGKKKGRNGKRDG  3780

Range 2: 3781 to 3876 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 18/32(56%) 0/32(0%) Plus/Plus
Query      291  KKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ  386
                K   W+V TFEVFL+  A  K G  VI DEVQ
Subject   3781  KSANWNVFTFEVFLKMAAKSKPGQVVIIDEVQ  3876

Range 3: 3585 to 3722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 24/46(52%) 0/46(0%) Minus/Minus
Query      107  SLLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVSSL  244
                S+    A+A LG+TKVT+ P  L M  L   LFPAP VP+T V+SL
Subject   3585  SVFTASARAFLGDTKVTHRPGLLEMNSLKSLLFPAPKVPNTAVTSL  3722

Range 4: 3798 to 3872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 15/25(60%) 0/25(0%) Minus/Minus
Query      308  TSSKITQ*PAFRPATFLRKTSKVTT  382
                TSS +T *P F  A  LR TSKV T
Subject   3798  TSSIMTT*PGFDLAAILRNTSKVKT  3872

Nucleotide Sequence (498 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
498

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
271.9 1338.9 42% 2.674e-78 53% NC_001948
190.3 412.1 35% 1.976e-51 33% NC_009892
176.1 377.7 38% 2.78e-48 34% NC_012038
182.1 355.7 32% 1.63e-49 28% NC_003462
178.9 317.5 23% 2.027e-48 52% NC_014821

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 5189 to 5527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
271.9 bits(587) 0.0 109/113(96%) 0/113(0%) Minus/Plus
Query        7  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  345
                WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE+TQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+P
Subject   5189  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIP  5527

Range 2: 5078 to 5140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 17/21(81%) 0/21(0%) Minus/Plus
Query      394  VWEGKLYGGPWLKVMLFLGQD  456
                V E KL G PWLKVMLFLGQD
Subject   5078  VREEKLCGDPWLKVMLFLGQD  5140

Range 3: 5081 to 5530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.1 bits(509) 0.0 100/150(67%) 0/150(0%) Plus/Minus
Query        4  RWNLRKESV**ELPVWLCAPQFCSFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPLFI*AFQFHFLDFTILILT*KKHDFKPWTTI*LPLP  453
                +W+   E +**E P+W   PQF SFNL LRKF TLSD HEEGY II  MPWVNAFK  TC+ QLLT STP+LIK+LLS+ I+TTHLP+ FQGHFTHP GP  LQI  GDV FKP FI*AF  H  +FTILILT +KH+F PW T *L LP
Subject   5081  QWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLP  5530

Range 4: 5188 to 5526 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 94/113(83%) 0/113(0%) Plus/Minus
Query        8  GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLNH  346
                G L+RK S+KNFPYG ARL+ AAST G EN RRFRTAMRKV+ESFPLCLG*MLSNLSHALL+CSPVPPLCSSKNC*V S PQRTSR SFKAILPT  ALVDSRLL+GM VLNH
Subject   5188  GILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH  5526

Range 5: 5077 to 5121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 8/15(53%) 0/15(0%) Plus/Minus
Query      413  MTLSHGPPYNFPSHT  457
                +T +HG P+NF S T
Subject   5077  ITFNHGSPHNFSSLT  5121

Range 6: 5082 to 5528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 101/149(68%) 0/149(0%) Minus/Plus
Query        6  GRGSYMVVHGLKSCFF*VKMRIVKSRKWNWNAQMKSGLKLTSP*AIWSRQGPAGWVKWP*KNTGRCVVDMR*LNNFLMSTGVEPVSN*VTHVKDLKAFTQGIRGMIXXXXXXXXXSV*NFLSLKLKLQN*GAQSHTGSSY*TLSFLRFH  452
                GR SY+V HG K CF  VKMRIVK ++W+ NAQMK+GLK TSP* IWS+ GP GWVKWP*K+ GRCVV M+*LNN LMS GVE VSN*  HV+ LKAFTQGI+ MI *PSSW SESV NF S +LKL N*G  +H G+SY* LS+ + H
Subject   5082  GRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH  5528

Range 7: 5097 to 5513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.4 bits(431) 0.0 90/139(65%) 0/139(0%) Plus/Minus
Query       21  GKCLVRTSRMALRASILQLQLEA*KILDAFGRP*GRLWNHSPYALGKCFQIFHMRYSIAHRFHPCAHQKIVELPHIHNAPPGVLSRPFYPPSGPLSTPDCLGGCEF*TTLHLSIPIPFPRLHNPHLDLEKA*L*AMDHH  437
                GK L+R S M   AS+ QLQ  A KI DAFG+P*GRL NH  YALGKCFQ  HM  S+AH+FHP AHQ+IVE  H HNAPP  LSRPFYPP+ P  TPD   GC F*T LHLSI  P  +LHNPHLD  KA*L  M HH
Subject   5097  GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHH  5513

Range 8: 5167 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 58/86(67%) 0/86(0%) Minus/Plus
Query      110  IGMLK*RVV*NSHPPKQSGVDKGPLGG*NGLERTPGGALWI*GNSTIF**AQGWNR*AIE*RM*KI*KHLPKA*GE*FHNLPHGRP  367
                + MLK*R+V*N HP + SGV++G +GG*NGLER  GGALW+* +STI **A GWN *A E  M*++*KHLPKA* +*F+NLPHG P
Subject   5167  VRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCP  5424

Range 9: 5083 to 5127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 9/15(60%) 0/15(0%) Minus/Plus
Query      407  GGEVIWWSMA*SHAF  451
                GGEV+W  M  S+AF
Subject   5083  GGEVMW*PMVKSYAF  5127

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 5087 to 5425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.3 bits(409) 0.0 74/113(65%) 0/113(0%) Minus/Plus
Query        7  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  345
                WFKTHIP+  LE+ RARWV K+  KE RE R G+EVT+QF DEH    G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +P
Subject   5087  WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIP  5425

Range 2: 4976 to 5035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 13/20(65%) 0/20(0%) Minus/Plus
Query      397  VWEGKLYGGPWLKVMLFLGQ  456
                V E KL G PWLK  +FLGQ
Subject   4976  VREPKLSGDPWLKTAIFLGQ  5035

Range 3: 5089 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 59/112(53%) 0/112(0%) Plus/Minus
Query        8  GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLN  343
                G   RKV  +N P G A LN A S  G E    F TA+R V ES PLCLG*++S LS AL+ C P   LCSS NC VTS P   S  SF +IL T  AL  SR   GM VLN
Subject   5089  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN  5424

Range 4: 4958 to 5395 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 48/146(33%) 0/146(0%) Plus/Minus
Query       37  ELPVWLCAPQFCSFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPLFI*AFQFHFLDFTILILT*KKHDFKPWTTI*LPLPYQTHPTH  474
                E   W  +P F +FN  L +     + H E   +  LMP +N+F  F+CV  L      + + KLLS+L++   L  F   +F HP  P  L+    +V F+P+F+  F  HFL   + +LT K   F+P  T *  L Y   P +
Subject   4958  EFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT*FRLAYLFIPAN  5395

Helleborus net necrosis virus, complete genome

Sequence ID: Length: 8542 Number of Matches: 4

Range 1: 4568 to 4906 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 71/113(63%) 0/113(0%) Minus/Plus
Query        7  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  345
                WFKTH+PL  +ES RA WV     KE+REVR GY V+ QF DEH    G+ L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL  A+ YGK+LLD FL  VP
Subject   4568  WFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVP  4906

Range 2: 4457 to 4519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 14/21(67%) 0/21(0%) Minus/Plus
Query      394  VWEGKLYGGPWLKVMLFLGQD  456
                V E KL G PWLK M+FLGQ+
Subject   4457  VREDKLAGDPWLKTMVFLGQE  4519

Range 3: 4567 to 4905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 55/113(49%) 0/113(0%) Plus/Minus
Query        8  GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLNH  346
                GT  +K+SS+ FP   A  + A ST GLEN +RF TA+RKV  S  LCLG*M S  S A ++  P+   CSS N  +T  P RTS  SF     TQ A   S   RG *VLNH
Subject   4567  GTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH  4905

Range 4: 4478 to 4840 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 41/121(34%) 0/121(0%) Plus/Minus
Query       73  SFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPLFI*AFQFHFLDFTILILT*KKHDFKPWTT  435
                + N R RK * L  GH++   I   +PWVN FK+ + + +  +    VLI KL+++ I+  H  VFF      P       +  G+VSF+P F     F+   F IL L  + H F+P  T
Subject   4478  ALNHRFRKS*ALLHGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPWFSQYRFFNL*LFNILFLAKEHHCFQPRIT  4840

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 5238 to 5582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.1 bits(391) 0.0 72/115(63%) 0/115(0%) Minus/Plus
Query        1  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPPN  345
                WFKTHIP+ +LE+ RA+WV K+  +E RE R G   T+QF D+H    G++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VP N
Subject   5238  WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLN  5582

Range 2: 5127 to 5189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 13/21(62%) 0/21(0%) Minus/Plus
Query      394  VWEGKLYGGPWLKVMLFLGQD  456
                V E KL G PWLK  +FLGQ+
Subject   5127  VREAKLVGDPWLKTKIFLGQN  5189

Range 3: 5240 to 5575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 56/112(50%) 0/112(0%) Plus/Minus
Query        8  GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLN  343
                GTL RKVSS+N P G A  +FA S  G E    F TA+R V  S PLCLG + S  S AL+N  P   L SS NC V   P R S  S +  L T  AL  SRL+ GM VLN
Subject   5240  GTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVNS*PRFLL*SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN  5575

Range 4: 5235 to 5519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 27/95(28%) 0/95(0%) Plus/Minus
Query       64  QFCSFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPL  348
                +FC    R  +  +L + H++   I  LMP V +F + + ++ LLT    V+I +LLS  ++   LP+  +  F +P     L+    DV  +P+
Subject   5235  KFCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPI  5519

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 3

Range 1: 5242 to 5580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 70/113(62%) 0/113(0%) Minus/Plus
Query        7  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  345
                WFKTH+P+  LE+ RA+WV ++  KE RE R G   T+QF DEH    G +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VP
Subject   5242  WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVP  5580

Range 2: 5131 to 5190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/20(65%) 0/20(0%) Minus/Plus
Query      397  VWEGKLYGGPWLKVMLFLGQ  456
                V E KL G PWLK  +FLGQ
Subject   5131  VREAKLVGDPWLKTKIFLGQ  5190

Range 3: 5244 to 5579 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 58/112(52%) 0/112(0%) Plus/Minus
Query        8  GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLN  343
                GTL +KVS +NFP G A LN A S  G E    F TA++ V  S PLCLG*M S LS AL++ SP+  LCSS NC V   P R SR S  + L T  AL  S  + G *VLN
Subject   5244  GTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN  5579

Nucleotide Sequence (347 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
347

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
228.3 750.1 41% 2.117e-59 45% NC_001948
183.0 340.1 33% 9.578e-46 34% NC_003870
180.7 413.0 18% 4.687e-45 38% NC_018714
180.7 445.1 34% 4.687e-45 32% NC_009991
180.2 451.0 27% 6.44e-45 40% NC_014821

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 5756 to 6082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.3 bits(492) 0.0 95/109(87%) 0/109(0%) Minus/Plus
Query        1  VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS  327
                VL  F P + YIEKKLMQALKPNFYIHSG G DELNEWVR RGFT +CTES YEAFDASQDHFILAFELQIM+FLGLPEDLILDYEFIKIHLGSKLGSF+IMRFTGEAS
Subject   5756  VLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRTRGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEAS  6082

Range 2: 5785 to 6081 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 75/99(76%) 0/99(0%) Plus/Minus
Query        2  LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMY  298
                LASPVNLII  +PSF+P+*I MNS*SKI+SSG+PKN +IC+SNA+MKWSW+ASKAS* DSV   V PL LTHSFSSS+P PE M*KLGF AC+SFFSMY
Subject   5785  LASPVNLIIENDPSFDPK*IFMNS*SKIKSSGNPKNFIICNSNARMKWSWEASKAS*SDSVQIPVNPLVLTHSFSSSRPFPEWM*KLGFRACISFFSMY  6081

Range 3: 5756 to 6082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 53/109(49%) 0/109(0%) Plus/Minus
Query        1  ACLTCKSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTKHTQH  327
                A L  K HYR+ ++L*++MN  E IV N*IFR   K H LQF+C DE+VLG +K F+ * CA   E+S  +P + L+ T+ *++VEVRLQ LH L  NV  +  K  Q+
Subject   5756  AGLPSKPHYRE*SEL*SQMNFYEFIVQN*IFR*PQKFHYLQFEC*DEVVLGSIKGFVV*FCANSSESSSSDPLVQLVXTFP*MDVEVRLQSLH*LFLNVSHIGCKANQN  6082

Range 4: 5755 to 6069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 47/105(45%) 0/105(0%) Minus/Plus
Query       14  CVGCVWS*VGVH*KEAHASIEA*LLHSLRHRF**AK*MG*GQRFHRCMHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIY  328
                C G + +   +H*++A+AS EA*LLH  R R   A+ +G   R H  +HR+RL S *  PRP H  I  A++EIF   *R NF L*+H++S   KA     NE+Y
Subject   5755  CSGSLCTLYEIH*EKANASSEA*LLHPFRERSXRAERVGQN*RIHWNLHRIRLRSL*CFPRPLHPSIRIADNEIFGVT*RFNFGL*IHKNSFGIKARIILYNEVY  6069

Range 5: 5760 to 6077 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 50/106(47%) 0/106(0%) Plus/Minus
Query        6  PHL*ISLSQKNQALNQDES**THSLKLDLQAVLKIS*FAVQMPR*NGLGMRQKLHSLTLCIHL*NL*P*PIHLAHQNLCLSECRS*ASMLA*ASFQCTPTQDQTHP  323
                P  * SL +  +AL  +E  * HS KL+LQ   KIS  A++M  *+GLG  Q+L SL LC   * L* *P   A  +L L+ CRS*AS LA A  QC   + Q+ P
Subject   5760  PPQ*TSL*RMIRALIPNEFL*IHSPKLNLQVTPKISLSAIRMLG*SGLGKHQRLRSLILCKFQ*IL*F*PTRSARXDLSLNGCRS*ASELALAFSQCISYRVQSEP  6077

Range 6: 5760 to 6029 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 45/90(50%) 0/90(0%) Minus/Plus
Query       54  WVCLVLSWGTLKRSSCKH*SLTSTFTQA*VLMS*MNGLGSEVSQMYAQSQAMKLLTHPKTISSWHLNCKS*DF*DCLKI*F*TMSSSRFI  323
                W  L     TL++S CK *SLTST  Q  V  S* +G   E S  +AQ+Q  K L  PKT SS H NC+ *+F   LKI*F TM+S +FI
Subject   5760  WFALHPI*DTLRKS*CKL*SLTSTSIQGKVXTS*TSGSELEDSLEFAQNQTTKPLMLPKTTSS*HSNCR**NFWGYLKI*FWTMNS*KFI  6029

Sugarcane striate mosaic-associated virus, complete genome

Sequence ID: Length: 8146 Number of Matches: 4

Range 1: 5083 to 5409 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.0 bits(393) 0.0 74/109(68%) 0/109(0%) Minus/Plus
Query        1  VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS  327
                VL  F P + YIEKKL+ +L  N+YIHSG  FD+LN WV+   F   CTES YEAFDASQDH+ILAFEL +M++LGLP +LI DY++IKIHLGSKLG FAIMRFTGEAS
Subject   5083  VLARFSPWVRYIEKKLVSSLPDNYYIHSGKNFDQLNAWVKANNFVGECTESDYEAFDASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEAS  5409

Range 2: 5082 to 5408 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 55/109(50%) 0/109(0%) Plus/Minus
Query        2  LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT  328
                LASPVNLI+AK P+FEP+*ILM  *S I S G P+  +  +S A +  S  ASKAS* DSVH+  K   LT + S SK  PE +* L  +   SFFSM    G N   T
Subject   5082  LASPVNLIMAKSPNFEPK*ILMYL*SSINSLGKPRYFINANSKASI**S*LASKAS*SDSVHSPTKLFALTQALS*SKFFPECI**LSGSELTSFFSM*RTHGENRART  5408

Range 3: 5332 to 5409 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 14/26(54%) 0/26(0%) Plus/Minus
Query        1  ACLTCKSHYRKRTKL*TKMNLDELIV  78
                A  T +SHY K T+ *T+MNL+ L+V
Subject   5332  AGFTGESHYGKITQF*TQMNLNVLVV  5409

Range 4: 5113 to 5286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 20/58(34%) 0/58(0%) Plus/Minus
Query      124  FKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNV  297
                FK Q  ++L C+K  I    A+  +    NP I LIK  + V + +  Q   +LLF V
Subject   5113  FKGQYIVILTCIKGLIIRFSAFTHKIVCLNPSIELIKVLSRVYIVIIWQ*TDQLLFYV  5286

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 4

Range 1: 5806 to 6132 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 75/109(69%) 0/109(0%) Minus/Plus
Query        1  VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS  327
                VL  F P + YIE K+ + L  N YIHSG   D+L EWV V  F  +CTES YEAFDASQDHFILAFEL++M+FLGLP DLI DY FIK HLGSKLG+FAIMRFTGEAS
Subject   5806  VLCRFAPYMRYIEAKVFEVLPKNLYIHSGKNIDDLAEWVTVHKFNGICTESDYEAFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEAS  6132

Range 2: 5805 to 6131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 54/109(50%) 0/109(0%) Plus/Minus
Query        2  LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT  328
                LASPV  +IAK PSFEPR +LM  *S +RS G P+N M  +S A++KWS DAS AS* DSVH  +   T+THS  SS   PE*+*+       +  S+Y   G N   T
Subject   5805  LASPVKRMIAKLPSFEPRWVLMKV*SAMRSGGRPRNFMTSNSKARIKWSCDASNAS*SDSVHIPLNLWTVTHSAKSSIFFPE*I*RFLGRTSKTLASIYLI*GANLHRT  6131

Range 3: 5818 to 6132 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 40/105(38%) 0/105(0%) Plus/Minus
Query        1  ACLTCKSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTK  315
                AC T K+H  K  KL T+M  +E ++ N + R++ + HDLQ K ++++VL  VK FI * CAY  E  D +P  *+I  +  +N+E+    L  L  N+P +  K
Subject   5818  ACFTSKAHDCKIAKLRTQMGFNESVISNEVGRKTKEFHDLQLKSKNKVVL*RVKCFII*FCAYPIELMDGDPLS*IINIFPRMNIEIFG*NLKNLGLNIPHIGGK  6132

Range 4: 5946 to 6131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 26/62(42%) 0/62(0%) Minus/Plus
Query        2  MHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIYR*GK  187
                MHR+RL*S *R+  P +   *   HEI  ++ R +  L  H + S F+AW FC++ +Y * K
Subject   5946  MHRIRL*SI*RVTGPLYSCF*VGGHEIPWSSARPHC*LHFH*NPSGFEAWQFCNHALYW*SK  6131

Phlox Virus B, complete genome

Sequence ID: Length: 9058 Number of Matches: 4

Range 1: 5419 to 5745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 76/109(70%) 0/109(0%) Minus/Plus
Query        1  VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS  327
                VL  F P + YIEKKL QAL  NFYIHSG G +ELNEWV    F  VCTES YEAFDASQD +I+AFE++++++LGLP DLI DYEFIK HLGSKLG+FAIMRF+GEAS
Subject   5419  VLCRFAPYMRYIEKKLHQALPGNFYIHSGKGLEELNEWVMRGRFDGVCTESDYEAFDASQDQYIMAFEIEMIKYLGLPADLISDYEFIKTHLGSKLGNFAIMRFSGEAS  5745

Range 2: 5418 to 5744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 66/109(61%) 0/109(0%) Plus/Minus
Query        2  LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT  328
                LASP NLI+AK P+FEP+*+L+NS*S IRS+GSPK  +I  SNA M WS DASKAS* DSV T      +THSF+SS+P PE M*KL   A  SFFSMY   G    +T
Subject   5418  LASPENLIMAKLPNFEPK*VLINS*SLIRSAGSPKYFIISISNAMMYWSCDASKAS*SDSVQTPSNLPRMTHSFNSSRPFPECM*KLPGKA*CSFFSMYLMYGAKRQST  5744

Range 3: 5448 to 5741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 41/98(42%) 0/98(0%) Minus/Plus
Query        5  VH*KEAHASIEA*LLHSLRHRF**AK*MG*GQRFHRCMHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIYR*G  298
                VH*+E  +S+  * LH+L    *  +*+G  +   RC++RVRL SF  I  P H G+   N ++ R   RS  RL V+QDS   +   FC NEI R G
Subject   5448  VH*EETASSLTR*FLHTLWKGP*GVE*VGHAREI*RCLYRVRLRSFRCITGPVHHGVRDRNDKVLRATRRSY*RLRVYQDSLGLEIGQFCHNEILRRG  5741

Range 4: 5419 to 5730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 33/104(32%) 0/104(0%) Plus/Minus
Query       16  KSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTKHTQH  327
                +SHY K  +   +++LD+L++ N I    *  +    +  D +VL C++SF+  LC    ++   +P I L+K  + V VE+    L + L NVP +R + T+H
Subject   5419  ESHYGKIAQFRAQVSLDKLVIANKICG*P*VLYHFDLERHDVLVL*CIESFVIGLCTDTVKSPSHDPLIQLLKALSRVYVEITW*GLMQFLLNVPHVRCETTEH  5730

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 5809 to 6135 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.2 bits(387) 0.0 74/109(68%) 0/109(0%) Minus/Plus
Query        1  VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS  327
                VL  F P + YIE K++++L  N YIHSG   D+L  WVR+  F  VCTES YEAFDASQDHFILAFEL++M++LGLP DLI DY FIK HLGSKLG+FAIMRFTGEAS
Subject   5809  VLCRFAPYMRYIEAKVVESLPKNLYIHSGKNIDDLASWVRIHKFNGVCTESDYEAFDASQDHFILAFELEVMKYLGLPADLISDYTFIKTHLGSKLGNFAIMRFTGEAS  6135

Range 2: 5808 to 6134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 59/109(54%) 0/109(0%) Plus/Minus
Query        2  LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT  328
                LASPVN I+AK PSF+PR*+LMN *S+I+S+G P+  M  +S A+MKWS DASKAS* DSVHT +    LT    SS   PE*M*+   +   +F SMY   G N   T
Subject   5808  LASPVNRIMAKLPSFDPR*VLMNV*SEIKSAGKPRYFMTSNSKARMKWSCDASKAS*SDSVHTPLNL*ILTQDARSSIFFPE*M*RFFGSDSTTFASMYLI*GANLHKT  6134

Range 3: 5812 to 6135 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 43/108(40%) 0/108(0%) Plus/Minus
Query        1  ACLTCKSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTKHTQ  324
                A  T +SHY K TK * K++ DE ++*N I  Q+   HD QFK Q+E+VL C+KS +   C +  E  + +P   +I     VNVE+  + LH   F V  +R K  Q
Subject   5812  AGFTSESHYGKITKF*PKVSFDECVI*NQICWQTKIFHDFQFKGQNEVVL*CIKSLVVRFCTHTIEFVNSDPGCQIINILPRVNVEIFWE*LHHFCFYVSHIRGKSAQ  6135

Range 4: 5880 to 6122 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 35/81(43%) 0/81(0%) Minus/Plus
Query       14  LHSLRHRF**AK*MG*GQRFHRCMHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIY  256
                LHSL   +**+  +G   +   C++R+ L  F* I  P H G+*  +HEI   A R +FRL +HQ+S W K W FC N I+
Subject   5880  LHSLWEEY**SGILGQNSQIQWCVYRI*LRGF*CITGPLHSGL*IGSHEISWFASRFDFRLHIHQNSPWVKTW*FCHNAIH  6122

Nucleotide Sequence (603 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 28 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
61
122
183
244
305
366
427
488
549
603

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
423.5 1551.8 32% 8.22e-118 50% NC_001948
112.4 288.4 36% 2.421e-44 41% NC_003462
109.7 294.5 36% 7.729e-43 43% NC_018714
107.4 293.9 34% 1.145e-46 38% NC_009892
101.4 289.7 26% 1.451e-42 58% NC_008020

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 6356 to 6955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
423.5 bits(918) 0.0 175/200(88%) 0/200(0%) Minus/Plus
Query        3  MGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVIV*ALSVWRDVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFIKTKTCRC*HQTC  602
                MGNLENCIDNYAIEVSYAYRLGEL+I +MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE I *ALS+W  +SIMNNLVKALSAFEFVGVF VLKFPVV+HSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGRYIKPYSPGCAV GK+NILDEYLSV D  GFDVLFSDPYQNIS+P+EAHFIK+KTCR    TC
Subject   6356  MGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTC  6955

Range 2: 6685 to 6957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 71/91(78%) 0/91(0%) Plus/Minus
Query        1  LQVWC*HLQVLVFMKCASLGTLMFW*GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  273
                LQV+  +LQV   MKCASLG LMFW GSENSTSKP  S TDKYSSSI  FP TAHPGE*GLMYLPVR GLSGTPAVKA K SSSE+SSLI+
Subject   6685  LQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK  6957

Range 3: 6355 to 6615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 64/87(74%) 0/87(0%) Plus/Minus
Query      343  NSNADKALTKLFIILTSRQTLKA*TITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPI  603
                NSNAD ALTKLFIIL   Q LKA*+I SN+PEIEHLILCLF T+  TQL* ASTSSSVI  + +SPS  A*+TSIA*LS+QFS+LPI
Subject   6355  NSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPI  6615

Range 4: 6356 to 6955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 112/200(56%) 0/200(0%) Plus/Minus
Query        3  AGLVLTPASFGLYEVCLPWNADVLVRV*EQHIKTMNV*DRQVLIKYIYLPLHCTPWRVGLDVPSC*IWTVWYTGCKSHERLVFRNELPY*ATFTATWNTMNNNWKFKHAEHTNKFEC*QSLD*VIHNTHITPNT*GLNNNLKQTRN*APHFVLIPNQETHAVIMRFNFLLSHHAYR*FSKSIGIRHLNCIIINAIFQIAH  602
                A +   P SF L E+CL  NADVLV V EQHIKT  + D QVLIKYI  P HCTPWR+ L+VPSC I  VW T C+S+E L+  N LPY* TFT T +TMN+ WKFKH E+T K +C*Q  +*+IHNT I PNT*GL N+ K   N*A H +L+P+QE++ +IM  +F L HH   * S+S+ I  L  II+N I Q+AH
Subject   6356  ASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAH  6955

Range 5: 6357 to 6944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
207.3 bits(446) 0.0 109/196(56%) 0/196(0%) Minus/Plus
Query       14  WAIWKIALIIMQLRCLMPIDLENYL*A**LRRKLKRIITACVSWFGISTK*GAQFLVCLRLLFRP*VFGVM*VL*IT*SRLCQHSNLLVCSACLNFQLLFIVFQVAVKVA**GSSFLKTSLSWLLQPVYQTVQI*QEGTSSPTLQGVQCKGR*IYLMSTCLSQTFMVLMCCSQTLTRTSAFQGRHTS*RPKLAGVS  601
                WA W+I L IM+ R  M  D E+    ** R+K + II    SW G S +* AQF   L+LL RP*VFG++*VL*I * + CQH +L V S CLNFQ  FIV  V VKV **GS F +  +S L Q V+QT  I QEGT S  LQGVQC+G+ IYLMSTC S+ F VLMCCS+T T+TSAF  RH S   KL G++
Subject   6357  WATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA  6944

Range 6: 6357 to 6956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 108/200(54%) 0/200(0%) Plus/Minus
Query        2  CRFGANTCKFWSL*SVPPLER*CSGKGLRTAHQNHECLRQTSTHQVYLSSLALHTLESRA*CTFLLDLDCLVHRL*KPRKTRLQK*APLLGYFYRYLEHYEQQLEI*ARRTHQQIRMLTKP*LSYS*YSHHAKHLRPKQ*PQTNQKLSTSFCAYSEPGNARSYNALQLPPQSSRL*IILQVYRHKTPQLHNYQCNFPNCP  601
                C++   T KF + *+VP  E *C G G RTAHQN + L +TSTHQVY  SLALHTLE++A*CTFL D  CL H L*K   +  +K APLL YFY Y  HYE  LEI*A   H Q +MLT  *L+YS*YS++AK+LRP Q* Q   KLS S  A S P    +YN   L P+SS   + L V  H+ P  HN Q N P CP
Subject   6357  CKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCP  6956

Range 7: 6676 to 6957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 57/94(61%) 0/94(0%) Minus/Plus
Query        1  *K*PNKGAHF*RRVFRGFYSRCTRQSKSNRKVHQALLSRVCSAREDKYT**VLVCLRHSWF*CAVLRPLPEHQRSKGGTLHKDQNLQVLAPNLQ  282
                *K* NKGA+F    F  F+SRC+RQ  S+RKVH AL SRVCSARE  YT**VLV  R   F*CAVL P+P+HQ S  GT H+ +NL V    LQ
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQ  6957

Range 8: 6355 to 6642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 48/96(50%) 0/96(0%) Minus/Plus
Query      316  NGQFGKLH**LCN*GVLCL*TWRIIYRRDD*GGS*SAL*LRAFPGSE*AQNEVLNFWFV*GYCLGLKCLA*CEYYE*LSQGFVSIRICWCVLRA*I  603
                +GQ G+L+* LC+ G+LC+ T R  +  DD G S   L*L    G E A +E+LNF  +* Y LGLK LA  EYYE* S   VSI +C C   A*I
Subject   6355  DGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*I  6642

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 6702 to 7085 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 56/128(44%) 0/128(0%) Minus/Plus
Query        6  VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFIKTKTCRC*HQT  389
                VSIM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS     GF+ LFSDPYQN      AHFI   + R   QT
Subject   6702  VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQT  7085

Range 2: 6411 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 34/58(59%) 0/58(0%) Minus/Plus
Query      423  NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  596
                NLENCIDNYAIEVS AY++GE     +T +EV+AHYNCVRF+V++ H ++ +I  LF+
Subject   6411  NLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK  6584

Range 3: 6413 to 6538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 27/42(64%) 0/42(0%) Plus/Minus
Query      469  TRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSK  594
                T KRTQL* ASTS  V   +  SP L A +TSIA*LS+QFSK
Subject   6413  TMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSK  6538

Range 4: 6854 to 7021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 23/56(41%) 0/56(0%) Plus/Minus
Query       70  FW*GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT  237
                FW*GSE     P     DKYSS +   P    P    L+Y+P     SGTP V A+
Subject   6854  FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTAS  7021

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 5

Range 1: 6676 to 7053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 54/126(43%) 0/126(0%) Minus/Plus
Query        6  IMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFIKTKTCRC*HQT  383
                IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS     GF+ LFSDPYQN      AHFI   + R  +QT
Subject   6676  IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQT  7053

Range 2: 6412 to 6582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 33/57(58%) 0/57(0%) Minus/Plus
Query      426  NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLF  596
                NLENCIDNYAIEVS AY++GE     ++ +EV+AHYNCVRF+V++ H ++ +I  LF
Subject   6412  NLENCIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF  6582

Range 3: 6822 to 6980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 23/53(43%) 0/53(0%) Plus/Minus
Query       79  GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT  237
                GSE    KP     D+YSS I  FP    P    LM +P  F  SGTP V A+
Subject   6822  GSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTAS  6980

Range 4: 6414 to 6473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 16/20(80%) 0/20(0%) Plus/Minus
Query      535  SPSL*A*DTSIA*LSMQFSK  594
                SP L*A +TSIA*LSMQFS+
Subject   6414  SPIL*AQETSIA*LSMQFSR  6473

Range 5: 6501 to 6539 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/13(92%) 0/13(0%) Plus/Minus
Query      469  TRKRTQL*CASTS  507
                T KRTQL*CASTS
Subject   6501  TMKRTQL*CASTS  6539

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 6482 to 6832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 50/117(43%) 0/117(0%) Minus/Plus
Query       39  VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFI  389
                V++M+ +V  L  + F      ++  ++VH+VPGSGK++LIRE ++ +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS     GFD  FSDP+QN      AHF+
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFV  6832

Range 2: 6260 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 37/60(62%) 0/60(0%) Minus/Plus
Query      417  NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVI  596
                NL+NCIDNYAIEVSYAY +GE     ++EEE++AHYNCVRF+V++ H ++CS+S LF  I
Subject   6260  NLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 3: 6259 to 6438 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 30/60(50%) 0/60(0%) Plus/Minus
Query      418  ITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKL  597
                I   + E EH       T   TQL*CAS SSS+     +SP  *A +TSIA*LSMQF +L
Subject   6259  IDLKRSETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRL  6438

Range 4: 6598 to 6801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 26/68(38%) 0/68(0%) Plus/Minus
Query       70  FW*GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  273
                F *GSE   S P  +  ++YSSS+   P    P     M  P  FG SG+P  KA+       +SLIR
Subject   6598  F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR  6801

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 4

Range 1: 5904 to 6083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 41/60(68%) 0/60(0%) Minus/Plus
Query      417  NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVI  596
                NL NCIDNYAIEVSYAY+LGEL++  M EEE EA YNCVR +V+NKH ++ SIS LF+ I
Subject   5904  NLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEI  6083

Range 2: 6153 to 6359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 40/69(58%) 0/69(0%) Minus/Plus
Query      174  MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPY  380
                M+ LV     F F  V  VL+ PV+ H VPG+GKS+LIRELI+ D  F+AFTAG PD PNL+GR IK Y
Subject   6153  MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY  6359

Range 3: 5903 to 6082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 35/60(58%) 0/60(0%) Plus/Minus
Query      418  ITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKL  597
                I+ NK EIE    CLF T   TQL  AS SSS I+   NSPSL A*+TS+A*LS+Q  KL
Subject   5903  ISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKL  6082

Range 4: 6260 to 6352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 18/31(58%) 0/31(0%) Plus/Minus
Query      181  LMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  273
                L+  P+RFG SG+PAVKA K  S  ++SLIR
Subject   6260  LIARPLRFGGSGSPAVKAMKR*SRLINSLIR  6352