Nucleotide Sequence (307 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
60.6 | 60.6 | 21% | 6.905e-08 | 38% | NC_017991.1 | |
60.6 | 60.6 | 21% | 6.905e-08 | 38% | JF716351.1 | |
56.5 | 56.5 | 17% | 1.204e-06 | 42% | KP774593.1 | |
56.5 | 56.5 | 17% | 1.204e-06 | 42% | NC_027139.1 | |
54.2 | 54.2 | 16% | 5.892e-06 | 43% | KT598233.1 |
Alignments
Botrytis porri RNA virus 1 RNA 2, complete genome
Sequence ID: NC_017991.1 Length: 5879 Number of Matches: 1
Range 1: 2820 to 3014 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 25/65(38%) | 0/65(0%) | Plus/Plus |
Query 63 GQRNILNLRGEPKLLYFGTKPENEPLRDRLKDAGTAKDLVSHYEPTFDLDSAPRQTHPTHSIEIG 257 G R + ++G PK+LY GT P + + RL GT L +HYEP FD D+A I+ G Subject 2820 GLRRVGTIKGAPKMLYVGTVPAHNTMAXRLAHTGTGPQLAAHYEPFFDQDAAANTVQTDLPIKAG 3014
Botrytis porri RNA virus 1 strain GarlicBc 72 segment 2, complete sequence
Sequence ID: JF716351.1 Length: 5879 Number of Matches: 1
Range 1: 2820 to 3014 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 25/65(38%) | 0/65(0%) | Plus/Plus |
Query 63 GQRNILNLRGEPKLLYFGTKPENEPLRDRLKDAGTAKDLVSHYEPTFDLDSAPRQTHPTHSIEIG 257 G R + ++G PK+LY GT P + + RL GT L +HYEP FD D+A I+ G Subject 2820 GLRRVGTIKGAPKMLYVGTVPAHNTMAXRLAHTGTGPQLAAHYEPFFDQDAAANTVQTDLPIKAG 3014
Sclerotinia sclerotiorum botybirnavirus 1 segment 2, complete sequence
Sequence ID: KP774593.1 Length: 5965 Number of Matches: 1
Range 1: 2542 to 2700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 22/53(42%) | 0/53(0%) | Plus/Plus |
Query 60 LGQRNILNLRGEPKLLYFGTKPENEPLRDRLKDAGTAKDLVSHYEPTFDLDSA 218 LG R+ + GEP+L+Y G +P +R+ +A A L SHYEP FD ++A Subject 2542 LGVRSTNTVTGEPRLIYLGLRPAIVQYEERMSEAQDASGLASHYEPAFDFNNA 2700
Sclerotinia sclerotiorum botybirnavirus 1 segment 2, complete sequence
Sequence ID: NC_027139.1 Length: 5965 Number of Matches: 1
Range 1: 2542 to 2700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 22/53(42%) | 0/53(0%) | Plus/Plus |
Query 60 LGQRNILNLRGEPKLLYFGTKPENEPLRDRLKDAGTAKDLVSHYEPTFDLDSA 218 LG R+ + GEP+L+Y G +P +R+ +A A L SHYEP FD ++A Subject 2542 LGVRSTNTVTGEPRLIYLGLRPAIVQYEERMSEAQDASGLASHYEPAFDFNNA 2700
Soybean leaf associated botybirnavirus 1 isolate SaBRV1 1 segment RNA1, partial sequence
Sequence ID: KT598233.1 Length: 3667 Number of Matches: 1