Queries
Nucleotide Sequence (945 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
296.6 | 1175.1 | 22% | 2.295e-79 | 34% | NC_003604 | |
104.6 | 381.5 | 19% | 9.67e-27 | 29% | NC_018458 | |
79.9 | 79.9 | 8% | 4.031e-14 | 38% | NC_016404 | |
71.6 | 118.5 | 15% | 5.666e-20 | 30% | NC_003602 | |
61.6 | 61.6 | 8% | 1.327e-08 | 38% | NC_011106 |
Alignments
Range 1: 5582 to 6139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
296.6 bits(641) | 0.0 | 127/186(68%) | 0/186(0%) | Minus/Plus |
Query 1 *V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 558 *V*T TLI R+ + + +V +MS S +K SS +IKVF+VKR+T+DLE LNK+LHRGD Y TEL E+VFPRRTKKCVIHK+++V+DGRVDCDLDIMD GLD+++EEEFPLYHVGCIVVALMPHGKNL GKV +E+ DTRL +SRISR+ MDMSKP+SACADFPGYFIST D LN Y Subject 5582 *V*TFTLITRRLSRDQCKRKVITAMSQEGSLGTKASSFEPQDIKVFHVKRSTRDLETLNKSLHRGDVYNTELIEKVFPRRTKKCVIHKDVIVKDGRVDCDLDIMDEGLDDINEEEFPLYHVGCIVVALMPHGKNLQGKVSVEVLDTRLVDGASRISRTLMDMSKPLSACADFPGYFISTSDLLNGY 6139
Range 2: 5197 to 5844 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 116/216(54%) | 0/216(0%) | Minus/Plus |
Query 296 TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQ 943 T L EFL G D G+GS+ SL + +C+ LL L+SLGY SID++L++LGGGE +RFEI ++FR G+ I EA QLG+ KSL SPR + ILDDLL R+ R ++FLP DLGAV GELV F SRLSVDLY+NNKKV +R + GD YV RRFSG+KG+I R++ GL ++E+Q R S+Q AS V* R G SKE++EVR Q Subject 5197 TGLSEFLGHGSDSCDSGSGSLGSLSYVQCVNLLSDLKSLGYQSIDSILYILGGGEAERFEIYRIFRRHGIGIGEALQLGVKKSLCNSPRSLLAILDDLLSRLGRGSAFLPSDLGAVKGELVATFHSSRLSVDLYVNNKKVVTRSVQAEGDYSYVARRFSGYKGLILRATRY*GLSRQKEHQRPRNSQQEPASG*RV*HRAHREGFSKENEEVRHPQ 5844
Range 3: 6042 to 6125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 18/28(64%) | 0/28(0%) | Minus/Plus |
Query 15 GYQGVSWICPNL*VHVLTSLGTS*APRI 98 GY G SWIC + * VLTS GTS AP I Subject 6042 GYLGPSWICQSH*APVLTSRGTSLAPVI 6125
Range 4: 5926 to 5982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 11/19(58%) | 0/19(0%) | Minus/Plus |
Query 158 VPIIPCRLHRRGTDAPW*E 214 +P +PCR+H G DA W*E Subject 5926 IPTLPCRVHSGGADATW*E 5982
Range 5: 5196 to 5843 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 95/216(44%) | 0/216(0%) | Plus/Minus |
Query 297 CVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV 944 C RTS SLE P +T DA C E W S RP R M PL PENL T SP+ TFLLL +STLNL+ + TSSP+TAP+S GR L +KSSSI GL +LF+ PS AS I PC R IS RS SPPP +S LSI PK L H + +D DPLP LS P RNS N V Subject 5196 CG*RTSSFSLEKPSL*ALCYTRHPDAGSC*EFRGLWCSF*RERP*YLVARRMRPLYPENLLAT*L*SPSACTDRVTTFLLLT*RSTLNLDEWNVATSSPLTAPRSLGRKALPLPSLDNKSSSIASRLLGLLHKLFLTPSCKASPIPIPCLRKIR*ISNRSASPPPKIYSMLSILWYPKLFRSLKRLTHCT*DKDPRDPLPESQLSLPCPRNSLNPV 5843
Range 6: 6043 to 6138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 23/32(72%) | 0/32(0%) | Plus/Minus |
Query 2 YRLS*SGVLMKYPGKSAHALIGLDISMKLLDI 97 Y S S VLMKYPGKSA AL G DISM++LDI Subject 6043 YPFSRSLVLMKYPGKSAQALNGFDISMRVLDI 6138
Range 7: 5926 to 5985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 16/20(80%) | 0/20(0%) | Plus/Minus |
Query 155 RFLPWGISATTMQPTWYNGN 214 RFLP GISATTM PTW +GN Subject 5926 RFLPCGISATTMHPTW*SGN 5985
Range 8: 5582 to 6139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 70/186(38%) | 0/186(0%) | Plus/Minus |
Query 1 VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLMKSA**SL*NLRISDGHTERHLQSTLF*STLSYY*CTSLHL 558 V ++ I GA EVPREVST HIHE P YP* + + HL ++LTM HQ H A MV WE L I+++ IHD+++ + +L + V ALL PWK +L +I + MQ+ V+S + G P +KDL ++ * L R H+ HL L S Y* LHL Subject 5582 VSVQQITGANEVPREVSTGAQWL*HIHEGPRYP*CPVYQPGV*NFDTHLALKVLTMWHQRHHYAPYMVEWEFLFIYVV*ALIHDVQIAVHAAVLNDDVFVDDALLRSPWKNLLYELCVIHVTPMQALVESFEVSGAPFDVKDLNILWLEG*GLCTQRTFLRHSCNHLPLALIA*QPSCY*RKGLHL 6139
Range 9: 5329 to 5832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 69/168(41%) | 0/168(0%) | Plus/Minus |
Query 308 HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVI 811 HF VLLG T S +SV Y SPRCR L R S+SLV L T KT IS ++D+ F E DI +T R+ SR + L+INV+VYT* +E Y L QI ++ AS + QV+ Y + A+ A*L SL++ ++ PE +LE+ RL ++Q++ + I Subject 5329 HFFVLLGKTFSMSSVLYTSPRCRLLLRVSRSLVLLLT*KTLISCGSKDEAFVPREPSCDIAVITFRLH*SRDNLLVINVKVYT*SGRVERCYQLTFDCPQITWKESAASPKSRQQVI*YCQ*TSWTVAQTLFDA*L*SLSDPDSVPPEDSIDLESFRLATTQNI*YAI 5832
Range 10: 5640 to 5981 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 39/114(34%) | 0/114(0%) | Minus/Plus |
Query 159 R*RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGMRMRPS*MNGYFQGGPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVR 500 R* +C ++L QR H + RS +G P +L T+ CI + S +FQG RSA T++ R SW++ M+R+SH TM A W *C MVR Subject 5640 R*LQLCRKKVLWVQRPHPSSHKILRSFTSKGAPETSKLSTRACIGVTCITQSS*RRFFQGERRSASSTKTSSLRTAAWTAIWTSWMRA*TT*MKRNSHSTM*GA*WWR*CHMVR 5981
Range 1: 5759 to 6016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 38/86(44%) | 0/86(0%) | Minus/Plus |
Query 214 SQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEE 471 S + SS E+K+F VK+ E LNKA+ R D Y+ EL ER+ P+RT+KCV+HKE+ V + RV+ +++IMD G+ +EE Subject 5759 SVLMASSSDNSREVKIFEVKKGATGFEELNKAISRSDVYDNELIERIMPKRTRKCVVHKEISVVNSRVNVEMEIMDDGVVGKLDEE 6016
Range 2: 6028 to 6210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 21/61(34%) | 0/61(0%) | Minus/Plus |
Query 23 IPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKH 205 +P R+ GTDAP E *G QG QG + D + G + +KC C + + H H Subject 6028 LPRRMLGGGTDAPRQER*G*GRASLQGP*AQGGKGRDWEYGCGSQERHKCTCRVSRLFHIH 6210
Range 3: 5518 to 5700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 21/61(34%) | 0/61(0%) | Minus/Plus |
Query 530 LGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNK 712 LG+T L + R I+D L+ + LP+DL + +V++ E RLSV +NNK Subject 5518 LGVTNFLETTDRSEEEIVDCLVKSLTNDRPRLPIDLHKLGRPIVVSKEGGRLSVTFRVNNK 5700
Range 4: 5987 to 6217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 41/77(53%) | 0/77(0%) | Minus/Plus |
Query 16 DTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPD 246 D + ++DEE +P+YH GC+VVALMPHG+N+ GKV + +D RLK I D+ K ISA A+FPGYFIST D Subject 5987 DGVVGKLDEEAYPIYHAGCLVVALMPHGRNVKGKVALRFKDRRLKAGKDVIGSMVADLKKGISAHAEFPGYFISTAD 6217
Range 5: 6031 to 6075 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 12/15(80%) | 0/15(0%) | Plus/Minus |
Query 158 FLPWGISATTMQPTW 202 FLPWGISATT P W Subject 6031 FLPWGISATTKHPAW 6075
Range 6: 5798 to 5986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 18/63(29%) | 0/63(0%) | Plus/Minus |
Query 244 IHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLY 432 +H + + I+P + LV+H YP +L +I I + F+Q L G LH +D + Subject 5798 VHYLHLHINP*VNNRDFLVHHTFACALRHYPLNELIVIHIASGDRFIQLLEPCGSFLHFEDFH 5986
Range 7: 5520 to 5699 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 21/60(35%) | 0/60(0%) | Plus/Minus |
Query 531 LLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKP 710 LLL K TLNL S L T KS G +K S+I + + R FV P Subject 5520 LLLTLKVTLNLPPSLLTTIGLPNLCKSMGSLGLSFVNDLTKQSTISSSLLSVVSRKFVTP 5699
Range 1: 5965 to 6201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 30/79(38%) | 0/79(0%) | Minus/Plus |
Query 1 LDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 237 +D ++EE+ P H+GC+ +A++PHG+ + G V +++ D R K + D+ +SA A FPGYF+ST D N Y Subject 5965 IDGLNEEKQPYLHLGCVAIAVIPHGRAMKGTVQIKVEDQRFKEGHGTVCSFKCDLKDALSAYASFPGYFVSTTDVKNGY 6201
Range 1: 5868 to 6098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 26/77(34%) | 0/77(0%) | Minus/Plus |
Query 1 EVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 231 +++ +P H+GC+ + ++PHG++L G+V LRDTR S+ + + +SA + FPGYF+ST D ++ + Subject 5868 KIETTSYPYLHLGCVAICVIPHGRDLKGEVEFTLRDTRFLPRSNPLMSFGCKAERMLSAFSAFPGYFVSTYDLIDGF 6098
Range 2: 5661 to 5852 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 19/64(30%) | 0/64(0%) | Minus/Plus |
Query 244 EIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMD 435 ++ VF + ++ + A+ + Y+ ER+FP R K V+H+E+ V+DG V +++MD Subject 5661 QLSVFPKPKEELGVKGVKSAIAKTKVYDLSYFERLFPTRVFKSVVHEEIRVRDGEVKQVINLMD 5852
Range 1: 5988 to 6206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 28/73(38%) | 0/73(0%) | Minus/Plus |
Query 16 DEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPD 234 D +D+E P HVGCIVV M ++ G + ++D RLKG I S ++A ADFP Y I+ D Subject 5988 DGLDKEATPFMHVGCIVVGFMSLARSAVGTYKVIIQDDRLKGEHKNICAFTFQTSDKVAAFADFPDYCIAVED 6206
Nucleotide Sequence (601 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
173.0 | 655.8 | 19% | 3.849e-79 | 30% | NC_003604 | |
120.2 | 197.7 | 29% | 8.809e-44 | 39% | NC_016404 | |
118.4 | 197.3 | 29% | 1.204e-43 | 43% | NC_003602 | |
89.8 | 307.8 | 36% | 1.135e-41 | 33% | NC_018458 | |
48.4 | 80.9 | 13% | 4.012e-09 | 35% | NC_011106 |
Alignments
Range 1: 3807 to 4070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.0 bits(374) | 0.0 | 72/88(82%) | 0/88(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY 597 P KTHLALS K+NELAPFDLKAKE REQ+T+AGRTEQIDE GY +PM+HKALYLRHTSDDTATFMMSVKKRLR+RNYE NRRKY Subject 3807 PTKTHLALSTKMNELAPFDLKAKEHREQHTEAGRTEQIDENGYQGEVGDPMTHKALYLRHTSDDTATFMMSVKKRLRFRNYEANRRKY 4070
Range 2: 3474 to 3740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.0 bits(308) | 0.0 | 59/89(66%) | 0/89(0%) | Plus/Plus |
Query 1 EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS 267 EDEDVMVA TRSRGEI I+V LK+ L+ +KS LL+K+L GET+RRS I+ +V+KHIPE ++FEE+RLA VDYE RLAGDPYLKS Subject 3474 EDEDVMVALTRSRGEIGIHVTPALKKKLITNAKSTLLKKVLKGETYRRSEIVAMVRKHIPETTVLFEESRLAETVDYEARLAGDPYLKS 3740
Range 3: 3815 to 4021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 47/69(68%) | 0/69(0%) | Minus/Minus |
Query 342 TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRARWV 548 TDIMKVAVSS+VCLRY+ALW++G P SSICSVRPASV CSR S A +SNGA+S F LRA+WV Subject 3815 TDIMKVAVSSDVCLRYNALWVMGSPTSPWYPFSSICSVRPASVCCSRCSFALRSNGASSFIFVLRAKWV 4021
Range 4: 3476 to 3754 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 48/93(52%) | 0/93(0%) | Minus/Minus |
Query 3 YKDNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS 281 Y+ D R*GSPA+L+S*ST+ A SSN SGMCF T + DLL VSP F S LL ++ + F T + ISPL+ VKATITSSS Subject 3476 YRARRDLR*GSPASLAS*STVSASLLSSNSTVVSGMCFRTIATISDLL*VSPLSTFFSSVLLALVISFFFRAGVTCMPISPLERVKATITSSS 3754
Range 5: 3798 to 4070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 34/91(37%) | 0/91(0%) | Minus/Minus |
Query 325 ILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLLTEGQMGLHWLQC 597 +L V I+S LF+ HHE C++R +P+V L+ H V+ + +LV L P + VLL +L V+W +L+ L +G MGL L+C Subject 3798 VLPSVGFIVSEAQPLFD*HHEGSCIIRCMPQVQRLVGHGVTHFSLVPILVYLFGPPCLCVLLPVLFCFEVKWCKLVHLCAQG*MGLGGLEC 4070
Range 6: 3887 to 4069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 23/61(38%) | 0/61(0%) | Plus/Plus |
Query 414 AVH*CRAYGAN*RGGLWAMGR*PNEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL*GEQEKV 596 A H RA + R + *P++P G +P+A+ * +S+ HDV K +QKL* +Q++V Subject 3887 ATHRGRADRTDRREWVPGRSG*PHDPQGVVPEAYI**YSYLHDVSQKEVALQKL*SQQKEV 4069
Range 7: 3482 to 3730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 25/83(30%) | 0/83(0%) | Plus/Plus |
Query 9 GCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSL 257 G DG L+ +Q R+R+ C E + E + R++ KI +AH+ + + GK G+ LRG GWR L Subject 3482 GRDGGLNPLQRRNRHTCNPCSEEETDHQC*KHTAEESTQGRNLQKIGDSGNGPKAHTRDHSAV*GKQTGRDGGLRG*AGWRPL 3730
Range 1: 3776 to 4039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(258) | 0.0 | 52/88(59%) | 0/88(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY 597 P KTHL +S K NELAP L+A+E RE T AG TEQIDE GY NPM+HKALYL H + D ATF +SVKKRLR+ + E N R++ Subject 3776 PQKTHLPISTKENELAPSLLRAREHREARTPAGTTEQIDEMGYKMEPENPMTHKALYLHHRNSDVATFFLSVKKRLRFMDREKNHRRF 4039
Range 2: 3446 to 3706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.5 bits(164) | 0.0 | 34/87(39%) | 0/87(0%) | Plus/Plus |
Query 4 DEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLK 264 D+ VMVA TR+R +++ VDK +KE L +KS +L+ L G+ +R I+ ++ + +I +E R A + D E++L+GDPYLK Subject 3446 DKAVMVALTRARNTLSVEVDKSMKEHLKVHAKSSILKMFLRGQMIKRELIMEMMGTDNGDVELIEKETRFADSDDMEDKLSGDPYLK 3706
Range 1: 3754 to 4017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(254) | 0.0 | 51/88(58%) | 0/88(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY 597 P KTHL L NEL+ DL++KE RE T+AGRT+QIDE GY NPM+HKALYL H + D ATF +S++KRLR+R+ E NRRK+ Subject 3754 PQKTHLPLCVGENELSISDLRSKESREVSTEAGRTDQIDELGYKGEPENPMNHKALYLYHQNSDVATFFLSIRKRLRFRDPEKNRRKF 4017
Range 2: 3424 to 3684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.9 bits(167) | 0.0 | 37/87(43%) | 0/87(0%) | Plus/Plus |
Query 4 DEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLK 264 DE V+VAFTR+R EI I D L L R++KS +L+KIL GE I++L++K +P+ + + + + EE+L+GDPYLK Subject 3424 DETVIVAFTRARKEINIIGDASLVNNLKRSAKSTVLKKILGGERVTEGLILSLIRKKLPDVIWLRRRCCSGQSDEMEEKLSGDPYLK 3684
Range 1: 3937 to 4128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.8 bits(191) | 0.0 | 38/64(59%) | 0/64(0%) | Plus/Plus |
Query 406 DREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY 597 +REQ T AG T QIDE GY NP +HKALYL H D ATFM+SV+KRLR+R+ E NR +Y Subject 3937 NREQKTTAGLTAQIDEMGYAGQNENPCTHKALYLHHKMDXAATFMLSVRKRLRFRDPEKNRARY 4128
Range 2: 3502 to 3765 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.3 bits(179) | 0.0 | 39/88(44%) | 0/88(0%) | Plus/Plus |
Query 1 EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLK 264 ED DV+VAFTR+RG ++L +KSE+LR IL R I+ ++K +P A +F E RLA+ +YEE+L GDPYLK Subject 3502 EDGDVIVAFTRARGTTKYMCSDSDMDMLKARAKSEVLRSILRAGKVGRDTILNSLRKEMPNAEPVFTEARLANTEEYEEKLMGDPYLK 3765
Range 3: 3835 to 3888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.7 bits(70) | 0.0 | 13/18(72%) | 0/18(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPF 387 P+KTHL LSE +NE+APF Subject 3835 PVKTHLFLSEGVNEMAPF 3888
Range 4: 3504 to 3764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 29/87(33%) | 0/87(0%) | Minus/Minus |
Query 3 FR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS 263 FR*GSP + SS S++ A S N +A G+ F + L + I R +SL + + S + + + P V ATITS S Subject 3504 FR*GSPISFSSYSSVFANLASVNTGSAFGISFLREFRIVSLPTLPALSIDRNTSLFALALSISISESEHMYFVVPRARVNATITSPS 3764
Range 5: 3937 to 4128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 22/64(34%) | 0/64(0%) | Minus/Minus |
Query 406 ILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTI 597 I PV +S A +R HE + V EV* LM WV + VNL S+LL + Subject 3937 IPGPVLFGVSEAEAFSHR*HEGCRXIHFVMEV*SLMCAWVFILTCVTHFVNLSCKTSGSLLLPV 4128
Range 1: 3883 to 4038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.4 bits(100) | 0.0 | 18/52(35%) | 0/52(0%) | Plus/Plus |
Query 430 GRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGN 585 G + QI + ++ P + ++YL HT++D F++S+KKRLR+ ++E N Subject 3883 GFSTQIRDNIASEFHPGPSAPSSIYLHHTAEDDVLFILSIKKRLRFADFEKN 4038
Nucleotide Sequence (454 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
313.6 | 777.4 | 27% | 7.083e-85 | 30% | NC_003604 | |
204.1 | 274.8 | 43% | 6.555e-52 | 39% | NC_016404 | |
217.8 | 329.8 | 34% | 4.77e-56 | 48% | NC_003602 | |
216.0 | 382.7 | 19% | 1.699e-55 | 32% | NC_018458 | |
102.3 | 232.9 | 26% | 4.559e-33 | 41% | NC_011106 |
Alignments
Range 1: 582 to 1034 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.6 bits(678) | 0.0 | 122/151(81%) | 0/151(0%) | Minus/Plus |
Query 2 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT 454 HDEVQYWSLDEMQRFLGSL RVVYSI+YP+EV+AG+ QSLFPEAYTFDLK+ RL WYPDGKAEGAYTQPVNPWLL CSKT DS+ RSWTIT+LQT+GAH LFSA+ GS+LT +SYKYDNFTIINPND+L+G+RG KPLYLRARMI+PT Subject 582 HDEVQYWSLDEMQRFLGSLSKVDRVVYSIIYPSEVEAGYSQSLFPEAYTFDLKDRRLVWYPDGKAEGAYTQPVNPWLLRCSKTEDSKGRSWTITKLQTIGAHHLFSAIKGSYLTEESYKYDNFTIINPNDVLKGKRGGKPLYLRARMIKPT 1034
Range 2: 584 to 1033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 94/150(63%) | 0/150(0%) | Plus/Minus |
Query 3 VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 VG I+ AR+ +G PL P R SLG MIVKLSYLY+S VK LP AL + AP VWS VIV ES+V H S+QGFTG V APSA PSGYH N S +SKV ASGN+L PASTS GY +LYTTL R P+NLCISS+LQY*TSS Subject 584 VGLIMRARR*SGFPPLFPFRTSLGFMIVKLSYLYDSSVK*LPFIALKR**APMVWSFVIVHDRPFESSVFEHLSSQGFTGCV*APSAFPSGYHTNLLSLRSKVYASGNRLCEYPASTSDGYMILYTTLSTLERLPKNLCISSRLQY*TSS 1033
Range 3: 648 to 902 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 30/85(35%) | 0/85(0%) | Plus/Minus |
Query 134 CTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSL 388 CT++ M GLE CD P S I A E PRVH L + + +P * P +V+S+ L +* L + L WV++ +++S+ Subject 648 CTKEVMSSDGLELCDRP*SPLRILRF*ASEQPRVHRLRIGSFSLPVRVPY*SPVFEVKSVRLWK*AL*ISSLDL*WVYDTIHYSI 902
Range 4: 933 to 1034 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 15/34(44%) | 0/34(0%) | Plus/Minus |
Query 2 CWADHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV 103 CW DH+ I S QNI+RV D EV++ V Subject 933 CWLDHAGP*IEWFPASLSLQNIVRVYDREVIVLV 1034
Range 5: 582 to 626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 9/15(60%) | 0/15(0%) | Plus/Minus |
Query 410 KPLHFIQTPVLNLVV 454 +PLH + TPVLNL++ Subject 582 EPLHLV*TPVLNLIM 626
Range 6: 590 to 1033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 45/148(30%) | 0/148(0%) | Minus/Plus |
Query 3 GSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKNDPPN 446 GSILE +AKV S + S + + +P GR + ++ I G++F + + ++MV + +++ EPL ++ ++ F+ +D+HKAPN +S + C+ G L+ G +Q+ LH+H+P* SEG +R + + +D N Subject 590 GSILESRRDAKVLR*SLQSR*SSV*YHIPIRGRGWIFTKPISRGVHF*PQRQEISMVPGREG*RSLYAACEPLAAQMLKNGGFEGAIMDDHKAPNHRSSSPL*CNKGQLLDGGIVQVR*LHDHKP*RCSEGKERRETTLSTGPHDQAN 1033
Range 7: 703 to 1035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 38/111(34%) | 0/111(0%) | Minus/Plus |
Query 1 RVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMIF*GGEEGASRYICVQE*SAQH 333 + Y R L T + G *+G + + + + *TLG S A + I + G+SQ SKP I+ VQ +* T+ TS+S TL +F* E + I *S+QH Subject 703 KAYFQRRTLLTSKTGD*YGTRTGRLKEPIRSL*TLGCSDAQKRRIRRGDHGRSQSSKPSELITSLVQ*RAAT*RRNRTSTITSRS*TLTMF*REREAGNHSIYGPA*SSQH 1035
Range 1: 569 to 1015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 77/149(52%) | 0/149(0%) | Minus/Plus |
Query 8 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIR 454 HDEVQYWSL + Q LG + KR++YSI+YPAE+D G+ SLFPEAY F+ + G W PDG+++GAY QP+NPWLL SKT+DSR R+WTI ++ + +H LF A LGS +T D Y YD++T+I + GRR +YLR+R ++ Subject 569 HDEVQYWSLQDFQLVLGQMNKVKRLMYSIIYPAEIDQGYEHSLFPEAYHFERRGGYFIWLPDGQSDGAYKQPINPWLLSTSKTIDSRGRTWTIGKVTSFASHHLFVASLGSTITEDEYTYDDYTVIPRGALSSGRRDYSGMYLRSRYVQ 1015
Range 2: 571 to 945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 49/125(39%) | 0/125(0%) | Plus/Minus |
Query 78 MIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 M V SY+Y S V LPR A N+ + + +V + LES V S+ G G +YAPS PSG + P SK *ASGN P S SAG + Y + F P S + QY TSS Subject 571 MTV*SSYVYSSSVMVLPRLATNRWWEAKLVTFPMVHVRPLESIVFEVLSSHGLIGCLYAPSDWPSGNQMKYPPRLSKW*ASGNNECS*PWSISAG*MIEYMSRFTLFICPSTSWKSCRDQYCTSS 945
Range 1: 541 to 984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 87/148(59%) | 0/148(0%) | Minus/Plus |
Query 11 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMI 454 HDEV YWSL + Q FLG L +R++YS++YPAE+ GF QSLFPEAY FDL +TWYPDGKA+G+Y QPVNPWLL SKTVD ++WT+T++ T+GAH LF A GS LT + Y YD+FT+I P +L+GRR K YLR+R I Subject 541 HDEVHYWSLKDFQSFLGHLGGTQRLLYSVIYPAELHIGFEQSLFPEAYEFDLLGEYITWYPDGKADGSYKQPVNPWLLTTSKTVDVHGQTWTLTKVLTMGAHHLFLATRGSTLTEEEYHYDDFTVILPKKLLQGRRRNKMPYLRSRFI 984
Range 2: 543 to 971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 69/143(48%) | 0/143(0%) | Plus/Minus |
Query 24 RKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 RKY L LRP R G M VK S Y S V LPR A + CAP V + V VQ+ STVL S+QGFTG + PSA PSGY V KS *ASGN+L P +SAG LY R PR L S +LQ TSS Subject 543 RKYGILFLLRPCRSFFGRMTVKSS**YSSSVSVLPRVAKKR*CAPMVSTFVSVQVWPCTSTVLEVVSSQGFTGCL*EPSAFPSGYQVMYSPSKSNS*ASGNRLCSKPMCSSAG*ITLYNKR*VPPRWPRKLWKSLRLQ*CTSS 971
Range 1: 583 to 987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.0 bits(465) | 0.0 | 85/135(63%) | 0/135(0%) | Minus/Plus |
Query 50 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGR 454 HDEVQYWSL ++Q FLG++E V+YS+VYPAE+ G SLFPEAY F++ +G WYPDGKAEGAY QP+NPWLL SKT D R R+WTIT+LQTVGAH LFS GS +T DSY YD FT+INP + GR Subject 583 HDEVQYWSLADLQNFLGNVEDNTNVLYSVVYPAEITTGITFSLFPEAYEFEVHDGYFIWYPDGKAEGAYKQPINPWLLTTSKTEDVRYRTWTITKLQTVGAHHLFSCTPGSTITEDSYTYDQFTLINPYNCFAGR 987
Range 2: 585 to 929 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 57/115(50%) | 0/115(0%) | Plus/Minus |
Query 108 SPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 S V P N+ CAPTV SLVIVQ+L L S+VL S+ G G +YAPSA PSGY + PS+ S *ASGN P SAG T Y T S P+ C S+ QY*TSS Subject 585 SSVMVEPGVHENR*CAPTVCSLVIVQVLYLTSSVLDVVSSHGLIGCLYAPSAFPSGYQMK*PSWTSNS*ASGNSENVIPVVISAG*TTEYNTFVLSSTLPKKFCRSASDQY*TSS 929
Range 3: 587 to 685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 14/33(42%) | 0/33(0%) | Minus/Plus |
Query 352 TRFNTGVWMKCKGFWGL*NTQREWYTALCTQRR 450 T+FNTG W CK FW + + +YT T++R Subject 587 TKFNTGHWQICKIFWVMWKIIQMYYTQWFTRQR 685
Range 4: 758 to 973 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 23/72(32%) | 0/72(0%) | Minus/Plus |
Query 64 GIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMI 279 G KQ+ ++ T G +L + D GQS + W HI+C V+ I T MT+S TL I Subject 758 GTLTEKQKVHINSRSTHGCLPHPKLRMLDIGPGQSPNCRLWEHITCFHAHQVLPSRRIATPMTSSP**TLTI 973
Range 1: 721 to 933 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 36/71(51%) | 0/71(0%) | Minus/Plus |
Query 71 TWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINP 283 TW PDGK G+Y QPVNPWLL +KT+D + R+WT+T+L++VG+H LF G +T D Y++FT+++P Subject 721 TWMPDGKCCGSYKQPVNPWLLSTNKTMDLKGRTWTLTKLESVGSHHLFLCTPGDLVTEDEAVYNDFTLVDP 933
Range 2: 616 to 720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 15/35(43%) | 0/35(0%) | Minus/Plus |
Query 278 VVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTW 382 ++Y+++YPAE+ AG+ SL+PE Y F + E T+ Subject 616 LIYTVIYPAELHAGYPFSLYPELYDFRVSEDGKTF 720
Range 3: 550 to 597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Plus |
Query 407 HDEVQYWSLDEMQRFL 454 HDEV YW+L + QRFL Subject 550 HDEVHYWNLKDFQRFL 597
Range 4: 720 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 31/76(41%) | 0/76(0%) | Plus/Minus |
Query 57 LRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHV 284 L S G VK Y S V + P + C PT+ S V VQ+L L S VL +N GFTG + P PSG V Subject 720 LEKSFGSTSVKSLYTASSSVTRSPGVHKKR*CDPTLSSFVRVQVLPLRSMVLFVLNNHGFTGCL*EPQHFPSGIQV 947
Nucleotide Sequence (334 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
233.4 | 684.6 | 50% | 6.055e-61 | 39% | NC_003604 | |
186.6 | 442.9 | 56% | 7.103e-47 | 33% | NC_003602 | |
186.6 | 523.0 | 38% | 7.103e-47 | 39% | NC_018458 | |
177.9 | 512.9 | 64% | 2.966e-44 | 43% | NC_016404 | |
131.2 | 247.1 | 34% | 3.48e-30 | 40% | NC_011106 |
Alignments
Range 1: 4044 to 4373 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.4 bits(503) | 0.0 | 91/110(83%) | 0/110(0%) | Plus/Plus |
Query 3 NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 NYE RRKY CHGIG QMFSV K YQ ++I+SLPELERCE EFM+KR+EKS LIE+H+GRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG Subject 4044 NYEANRRKYKTCHGIGHQMFSVFKDTYQLKEIDSLPELERCEMEFMKKRIEKSTGLIEKHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 4373
Range 2: 4043 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 86/111(77%) | 0/111(0%) | Minus/Minus |
Query 2 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*F 334 GPNLHSTE AKQAMV PA ASTP FSIFVQVCCFRNILR*LLGQSGSL P C SIS LFS LF MNS SHLSSSG +SISL W TENIW PIPWQ YFLL S*F Subject 4043 GPNLHSTE*AKQAMVCPALASTPLFSIFVQVCCFRNILR*LLGQSGSLLPACFSISPVLFSILFFMNSISHLSSSGSESISLSWYVSLNTENIWCPIPWQVLYFLLLAS*F 4375
Range 3: 4043 to 4342 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 44/100(44%) | 0/100(0%) | Plus/Plus |
Query 2 KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRL 301 KL* ++++V LP APNV +G +P + ++ART ++ +HE+E E+ R A R +* RLA+QLPQ+IP+AA+LH++G+ G C G +NHRL Subject 4043 KL*SQQKEVQDLPRYRAPNVLGVQGHIPAQRD*LTARTGKVRNGVHEEEDREEHRAYRKACRKE*PRLAEQLPQNIPKAADLHKNGKEGGGC*GGTNHRL 4342
Range 4: 4044 to 4370 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 42/109(39%) | 0/109(0%) | Minus/Minus |
Query 3 KSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLII 329 +S +R+ + DGL+ L I+P L H AGLLL EY EV+A PVW+T + +LF + A L+ L HE +F Q + LV L + +HL P ++A +L + I+ Subject 4044 ESTQHRMSETGDGLSRLSIHPPLFHFCAGLLL*EYFEVIARPVWVTPSGMLFDKPGALLYPLLHELHFAPFQFGQ*VNLFELVCVLEHREHLVPYTVASLVLPSVGFIV 4370
Range 5: 4090 to 4338 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 34/83(41%) | 0/83(0%) | Plus/Plus |
Query 49 GAKCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPS 297 G KC + R T+ C N + + +S* R R+A S V QTG A TS+YS*SS+PA++W+ G M R KPS Subject 4090 GTKCSRCSRTHTSSKRLTHCPNWKGAKWSS*RRG*RRAPGLSKSMPEGVTQTGRAITSKYS*SSRPAQKWKRGGWMLRRDKPS 4338
Range 1: 3997 to 4320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.6 bits(401) | 0.0 | 75/108(69%) | 0/108(0%) | Plus/Plus |
Query 9 EGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 E RRK+ C G G QMF V+K VY + + LP LER E++FM+KR+ KSA LIE+HS RS+PDWPSNYLKIFLKQQ CTKMEKR VDAKAGQTIACF H+VLCRFG Subject 3997 EKNRRKFNKCKGFGAQMFGVMKSVYNLKQPDHLPLLERAEQDFMKKRIAKSAKLIEKHSYRSEPDWPSNYLKIFLKQQRCTKMEKRKVDAKAGQTIACFCHAVLCRFG 4320
Range 2: 3991 to 4320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 47/110(43%) | 0/110(0%) | Minus/Minus |
Query 3 AKSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLII 332 +KSA +R+ KA GL I L HL A LLLQE +VV GPVW+ S VL YQ C F HE L SL+ ++ +VD+L + +HL+P A L+P+ L I Subject 3991 SKSAKHRMTKARYGLPSFRIDLPLFHLCASLLLQEDFQVVTGPVWLASVTVLLYQLCRFCDPFLHEILLCSLQQG*VIWLFQIVDALHHPEHLSPKPFAFVELAPIFLRI 4320
Range 3: 4011 to 4319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 34/103(33%) | 0/103(0%) | Plus/Plus |
Query 23 KVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQIW 331 +V ++ W NV + L E R E R HE++ + DR A K +RLAQ LP+++ EA +H+DG+ GRC+ +NH +L + + IW Subject 4011 QVQQMQRVWGSNVRGDEERLQSETTRSPTLVGESRARFHEEKDRKIGKADREAQLQKRARLAQ*LPENLLEATEMHKDGKEEGRCESWANHSVLLSCGALPIW 4319
Range 4: 4212 to 4322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 24/37(65%) | 0/37(0%) | Minus/Minus |
Query 224 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNI 334 GPN ST K AMV PAFAST FSIFV +CCF+ I Subject 4212 GPNRQSTA*QKHAMVCPAFASTFLFSIFVHLCCFKKI 4322
Range 5: 4106 to 4318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 28/71(39%) | 0/71(0%) | Plus/Plus |
Query 118 RDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTLYYADL 330 R+ K S* + + ** ST E QTGP TT + S*S++ A+RW+ M++ KP A +ADL Subject 4106 REQSKIS*RKGSQNRQS**RSTVTEASQTGPVTT*KSS*SNRDAQRWKRGRSMRKLGKP*RAFVMRCFADL 4318
Range 1: 4108 to 4431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.6 bits(401) | 0.0 | 73/108(68%) | 0/108(0%) | Plus/Plus |
Query 9 EGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 E R +Y GIGRQMF VLK Y W I+SLP LE+ E +FM+KR+ KSA+L+E+H+ RSDPDWPSN +KIFLKQQ CTK+EKRGVDAKAGQTIACF+H+VLC+FG Subject 4108 EKNRARYEKHKGIGRQMFDVLKKTYHWTSIDSLPPLEKAEADFMKKRLNKSAALLERHNIRSDPDWPSNIIKIFLKQQVCTKLEKRGVDAKAGQTIACFSHAVLCKFG 4431
Range 2: 4323 to 4433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 26/37(70%) | 0/37(0%) | Minus/Minus |
Query 224 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNI 334 GPNLH T KQA+V PAFASTP FS FV CC RNI Subject 4323 GPNLHKTA*EKQAIVWPAFASTPLFSSFVHTCCLRNI 4433
Range 3: 4113 to 4280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Minus |
Query 14 CCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLF 181 C S + AL +LF M S S SS G +SI + F+T NI RPIP Y LF Subject 4113 CRSSNAALLFSLFFMKSASAFSSGGSESIEVQ*YVFFKTSNICRPIPLCFSYRALF 4280
Range 4: 4155 to 4430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 36/92(39%) | 0/92(0%) | Plus/Plus |
Query 56 NVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQIW 331 NV K + ++ YR + T E +HEKE+ +K A + LA Q Q+IP+AA++HE GE RG CKG N+RL + +QIW Subject 4155 NV*CLKEDISLDFYRFTTPT*ESRG*LHEKEAEQKCCIAGAAQHKERP*LA*QHNQNIPQAASVHEAGEKRGGCKGGPNYRLFLSCSLVQIW 4430
Range 5: 4153 to 4404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 34/84(40%) | 0/84(0%) | Minus/Minus |
Query 54 KASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHL 305 + D L LCI+PS L LRA LLL+EY + VA P+ + V Q F+ L HE L L++ Y P++ L*+ KHL Subject 4153 ETGDSLARLCIHPSFLQLRAHLLLEEYFDYVARPIRVAPYVVPLQQCSTFVQPLFHEVSLCFLKWG**IYRSPMICLL*DIKHL 4404
Range 6: 4211 to 4429 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 29/73(40%) | 0/73(0%) | Minus/Minus |
Query 112 QICIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRV 330 QIC +++R F PLH PL SP+SC AA GI * C A+ A ++ F SFS* +S+V Subject 4211 QICTRLHERNRR*FGPPLHPPLFSPASCTLAA*GIF*LCC*ANQGRSLCCAAPAMQHFCSASFS*SQPLLSQV 4429
Range 7: 4154 to 4396 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 34/81(42%) | 0/81(0%) | Plus/Plus |
Query 55 KCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPS 297 KC *R G +* + R R S*+R K H + T G AT S+YS SSK AR WR EG MQR K S Subject 4154 KCLMS*RRHIIGLL*IHYPHLRKQRLTS*KRG*TKVLHCWSGTT*GATLIGLAT*SKYSSSSKCARSWRKEGWMQRRAKLS 4396
Range 1: 4019 to 4342 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 71/108(66%) | 0/108(0%) | Plus/Plus |
Query 9 EGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 E R++ G G+Q+F VLK Y R + LP+L+R E EF RKR+ KS +LIE+HS RSDPDWPS+YLKIFLKQQ CTKMEKRGVDAKAGQTIACF H+VLC+FG Subject 4019 EKNHRRFNKVKGFGKQLFKVLKETYNLRQPDKLPDLDRIEAEFARKRLNKSKNLIEKHSYRSDPDWPSHYLKIFLKQQVCTKMEKRGVDAKAGQTIACFCHAVLCKFG 4342
Range 2: 4234 to 4344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 29/37(78%) | 0/37(0%) | Minus/Minus |
Query 224 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNI 334 GPNLHST K AMV*PAFASTP FSIFV CCFR I Subject 4234 GPNLHSTAWQKHAMV*PAFASTPLFSIFVHTCCFRKI 4344
Range 3: 4048 to 4194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 21/49(43%) | 0/49(0%) | Minus/Minus |
Query 38 ECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPW 184 EC SI LFL NS S LS SG S L FRT P P+ Subject 4048 ECFSIKFLDLFNLFLANSASILSRSGSLSGCLKLYVSFRTLKSCLPKPF 4194
Range 4: 4064 to 4333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 40/90(44%) | 0/90(0%) | Minus/Minus |
Query 54 A*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHL 323 A*+ + +A DGLTG + PSLLH RA LLLQE EVVA P+ + S *+ FYQ F+ S EF L ++ + ++ +V L*+ K L Subject 4064 A*HSMAEACDGLTGFRVNPSLLHFRAYLLLQEDFEVVAWPIRVRSI*MFFYQILRFIQPFSCEFGLYPVKVRELIWLSQVVCLL*DLKKL 4333
Range 5: 4213 to 4338 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 23/42(55%) | 0/42(0%) | Plus/Plus |
Query 203 LAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI 328 LA+ LPQ++PEA ++HE+GE RG + RS+HR+L C MQI Subject 4213 LAKPLPQNLPEATSMHENGEERG*RESRSDHRMLLPCCAMQI 4338
Range 6: 4137 to 4337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 29/67(43%) | 0/67(0%) | Plus/Plus |
Query 127 RKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTLYYAD 327 R NS E+ ** + +++ G ATTS+ S*S+K AR+WR EG ++PV+PS A L YA+ Subject 4137 RPNSQEKG*INLRI**KNIHIDLTLIGQATTSKSS*SNKYARKWRREGLTRKPVRPSHASAMLCYAN 4337
Range 7: 4179 to 4340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 24/54(44%) | 0/54(0%) | Minus/Minus |
Query 169 QICIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLS 330 +ICI Q +S RW DR PL+SP SC ASG *GS A+ ++ LS Subject 4179 RICIAQHGRSMRWSDRLSRQPLSSPFSCILVASGRF*GSGLANQGQIYMNVFLS 4340
Range 1: 4153 to 4359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 50/69(72%) | 0/69(0%) | Plus/Plus |
Query 126 EKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 E +F KR++KSA ++E HS RSD DWPSNYLKIF+K Q CTKMEKRG DAKAGQTIACF+H+VLC+FG Subject 4153 ELDFTMKRIQKSARILEAHSYRSDADWPSNYLKIFIKNQDCTKMEKRGSDAKAGQTIACFSHAVLCKFG 4359
Range 2: 4227 to 4361 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 18/45(40%) | 0/45(0%) | Plus/Plus |
Query 200 RLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQIWP 334 RLA+QL ++ + LH+DGE RC+ +N+ + + C +QIWP Subject 4227 RLAKQLSENFYQEPGLHQDGEKGFRCQSWANNSMFLSRCVVQIWP 4361
Nucleotide Sequence (367 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
241.6 | 676.8 | 11% | 2.303e-63 | 42% | NC_003604 | |
133.0 | 214.4 | 44% | 1.129e-30 | 42% | NC_016404 | |
139.4 | 244.5 | 36% | 1.323e-32 | 49% | NC_018458 | |
69.3 | 192.6 | 32% | 7.123e-22 | 44% | NC_003602 | |
47.8 | 111.3 | 26% | 2.181e-13 | 40% | NC_011062 |
Alignments
Range 1: 2787 to 3152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.6 bits(521) | 0.0 | 98/122(80%) | 0/122(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 VLLGKYNKGKMH+ +EEP EVLT+FGFAGSGKSHW QTIL+ C VEK LVISPRKVL+DDWV KISKKH+VVTFEVAF DD+GCK IVIDEIGLLPPGY+DLVI+ P TLVLLGDP QS Subject 2787 VLLGKYNKGKMHTGEIEEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLRDDWVAKISKKHRVVTFEVAFMDDYGCKDIVIDEIGLLPPGYIDLVIAAHQPRTLVLLGDPLQS 3152
Range 2: 2786 to 3142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 82/119(69%) | 0/119(0%) | Minus/Minus |
Query 1 GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT 357 GSP TRV G* +TRS PGG PISSIT++LQP SS+ ATSKVTTLCF +IF TQSSL TFLGLIT+ FST Q SMV Q*LFPDPA PK V TS GSS CILPLLY P RT Subject 2786 GSPRSTRVRG*CAAITRSMYPGGRRPISSITISLQP*SSMNATSKVTTLCFLDIFATQSSLSTFLGLITSTFSTEQCLSMVWHQ*LFPDPANPKAVRTSFGSSISPVCILPLLYLPSRT 3142
Range 3: 2787 to 3095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 43/103(42%) | 0/103(0%) | Minus/Minus |
Query 2 QIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEKN 310 +++V W + LVY+ AA V+ + + YH +LL P+I E+ PW ++ FL+ T +YGL PVTF ++KG L W L RMHLAFIVL E+N Subject 2787 KVYVPRW*KTDLVYHDIFAAVVVHECHLESYHSMLLGYFCYPIISEHFPWANHKHFLHGTVFKYGLAPVTFP*SCKSKGR*NLFWLLYLARMHLAFIVLAEQN 3095
Range 4: 2789 to 3079 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 41/97(42%) | 0/97(0%) | Plus/Plus |
Query 4 SSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPT 294 S+R+VQ*RQDA+ + G G++ LW R+R+KSL NHT L E+ KE +Q *LG ++++EA GN ++ L LQ + RRDR + T Subject 2789 SARQVQ*RQDAYGRDRGAKRGSNGLWICRIREKSLVPNHT*TLFRGESACD*PKESAQR*LGSKNIQEA*SGNFRGGIHGRLRLQRYRDRRDRSSTT 3079
Range 5: 2788 to 3045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 38/86(44%) | 0/86(0%) | Plus/Plus |
Query 3 FFSGSTIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAAR 260 F S STIKARCI R+Q R+* PL KVTG KPY V RK QG+ S M G + RS W* + T AA+ Subject 2788 FCSASTIKARCIRAR*RSQKRF*RPLDLQDQGKVTGAKPYLNTVPWRKCL*LAQGKCSEMIG*QKYPRSIEW*LSRWHSWTTTAAK 3045
Range 1: 2756 to 3121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 62/122(51%) | 0/122(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 V L KY K + + I+V FGFAGSGKS++ QT+L+ C ++ TLVI PRK LK DW K+ V TFE AF G + I+IDE+GLLPPGY+DLV + F T++LLGDP QS Subject 2756 VNLNKYQKRPLGTDIDNTLIDVYGLFGFAGSGKSYYPQTLLRCCNMKDTLVIVPRKALKADWSEKVKDGAIVRTFESAFNGRKGYENIIIDEVGLLPPGYIDLVHANFQYDTMLLLGDPLQS 3121
Range 2: 2899 to 3117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 31/73(42%) | 0/73(0%) | Minus/Minus |
Query 145 CGGSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNV 363 C GSPN + V K TRS PGG P SSI + P +KA SKV T+ F QS+ F G +T+V Subject 2899 CSGSPNNSIVSYWKLACTRSMYPGGRRPTSSIMIFSYPFLPLKALSKVLTMAPSFTFSLQSAFSAFRGTMTSV 3117
Range 1: 2815 to 3177 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 60/121(50%) | 0/121(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQ 364 +LL K+ +GK + + I+ ++ FGFAGSGKS++ QT+LQ + LVISPRK L DW KI + KVVTFE A ++ IV+DE+GL PPGY+DL+ + P+TLVLLGDP Q Subject 2815 ILLNKFKRGKSVIKDVRKEIKFVSFFGFAGSGKSYYPQTVLQHTFGIRALVISPRKALAADWSSKIGSRAKVVTFEKAVVEEEVFSCIVVDELGLYPPGYLDLICLLHEPSTLVLLGDPLQ 3177
Range 2: 2832 to 3176 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 56/115(49%) | 0/115(0%) | Minus/Minus |
Query 19 CGGSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLL 363 C GSPN TRV+G RS *PGG P SS TM L SS A S VTT IF QS+ FLGLIT+ + WS V* *L PDPAKPK+++ I +LPLL Subject 2832 CKGSPNNTRVLGSCNRQIRSR*PGGYRPNSSTTMQLNTSSSTTAFSNVTTFARDPIFELQSAANAFLGLITSARMPNVCWSTV*G**LLPDPAKPKKLTNFISFLTSLITLLPLL 3176
Range 1: 2764 to 2979 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 32/72(44%) | 0/72(0%) | Plus/Plus |
Query 23 KGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAF 238 K + + +E I+V + GFAGSGKS + Q +L++ +LVI PRK L DW K+ KVVTFE AF Subject 2764 KSSFNLVNGKELIDVHLTLGFAGSGKSFYPQCVLKNSHYANSLVIVPRKALCSDWSNKVHPDVKVVTFESAF 2979
Range 2: 2995 to 3108 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 23/38(61%) | 0/38(0%) | Plus/Plus |
Query 251 GCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQ 364 G IVIDEIGLLPPGY+D+V F +L++LGDP Q Subject 2995 GYGLIVIDEIGLLPPGYIDMVHGYFCYDSLLVLGDPLQ 3108
Range 1: 2604 to 2759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 21/52(40%) | 0/52(0%) | Plus/Plus |
Query 212 KVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 KV+TFE IVIDE+ L+P GY+D++I++ T + L DP Q+ Subject 2604 KVMTFEAGLRRVQKSSLIVIDELSLMPNGYLDMLINMNEEATFITLFDPLQA 2759
Nucleotide Sequence (463 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
268.2 | 922.2 | 38% | 3.298e-71 | 51% | NC_003604 | |
203.6 | 410.6 | 31% | 9.267e-52 | 36% | NC_018458 | |
89.0 | 333.6 | 40% | 2.184e-37 | 35% | NC_016404 | |
80.8 | 157.0 | 29% | 8.599e-32 | 50% | NC_003602 | |
63.4 | 89.2 | 18% | 1.038e-11 | 48% | NC_011106 |
Alignments
Range 1: 6414 to 6833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.2 bits(579) | 0.0 | 112/140(80%) | 0/140(0%) | Plus/Plus |
Query 17 MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 436 M YA+R EIRA+IEELVLA+A+ ++D S GYDR MYLNTLFGYIALVGTSKKA HYGEVDIVGP AS+KTG+DPRGK+ V+ +V RMRTLS AVSEGPVKGATLRQMCEPFAQNAYDFLVVMAE+GTY+QLA+KMTRS Subject 6414 MAHYAKRVEIRAIIEELVLAKAQPTDDASESGYDRNMYLNTLFGYIALVGTSKKAIHYGEVDIVGPKASKKTGIDPRGKMVVSELVGRMRTLSVAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAEMGTYSQLATKMTRS 6833
Range 2: 6521 to 6832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 87/104(84%) | 0/104(0%) | Minus/Minus |
Query 124 DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI 435 DLVIL+ANC YVP SAITTRKS*AF ANGSHICLRVAPLTGPSLTA LSV + T T I PLGS PVFLLALGPTISTSP**+AFLLVPTKA+YPKRVFRYI Subject 6521 DLVILVANCEYVPISAITTRKS*AFCANGSHICLRVAPLTGPSLTATLSVRILPTSSDTTIFPLGSIPVFLLALGPTISTSP**IAFLLVPTKAMYPKRVFRYI 6832
Range 3: 6408 to 6833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 73/142(51%) | 0/142(0%) | Minus/Minus |
Query 11 *PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTHES 436 *PSHL L V + SH+ +EIV VL EW AHLPQ C LD SLAY T+ +H H + P V L R+YYIYL IM+RLFA DQGD+PEES+QVH SVVA V++ L R+H+L Y+R L P V+ H S Subject 6408 *PSHLGG*L*VCAHFSHHYEEIVGVLCEWLAHLPQSCALDGSLAYCHTQRAHPADQLRHHHLPPGVDPRLLASFRTYYIYLPIMNRLFACPDQGDVPEESVQVHISVVAALRSVVSWLGFRQHQLFYYRPYLYPLGVVCHLS 6833
Range 4: 6506 to 6646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 33/47(70%) | 0/47(0%) | Plus/Plus |
Query 109 RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG 249 RLRP YVPE+SLRV+RLGR+ QKGDSLW GRYSR+* ED P+G Subject 6506 RLRPKYVPEHSLRVHRLGRDKQKGDSLWGGRYSRS*S*QEDGDRPQG 6646
Range 5: 6692 to 6832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 28/47(60%) | 0/47(0%) | Plus/Plus |
Query 295 CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V 435 C KRGT QG N EADVR IR++RLRFP G* ++ V QDD*V Subject 6692 CGSKRGTRQGRNSEADVRAIRTERLRFPRSDG*NGHILTVSHQDD*V 6832
Range 6: 6508 to 6750 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 45/81(56%) | 0/81(0%) | Plus/Plus |
Query 111 ATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCANH 353 ATTE+CT* LSSG SPWS AKRR IM R*I** L R T G + +W V +*ARD SR Q *GRCA+H Subject 6508 ATTEICT*TLSSGTSPWSGQAKRRFIMGR*I**VLKLARRRGSTPGGRWWCRSWSAGCAR*VWQ*ARDPSRAQL*GRCASH 6750
Range 1: 6507 to 6932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 86/142(61%) | 0/142(0%) | Plus/Plus |
Query 17 MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRSAN 442 M Q +RR +R V+E LVL+ A LSE+T + GYD+ MYL TLFGYIALVGTSKKA HYGEV I+GP ++ G+D RG IN+A V RMR LS AV+EG K AT+RQMCEPFA+ AY+ L+++A LG Y+QLA KM+R N Subject 6507 MAQISRRMNMREVVETLVLSGANLSENTETAGYDKQMYLRTLFGYIALVGTSKKAVHYGEVQIMGPRTNKVRGVDARGVINIAEQVNRMRGLSVAVTEGVAKDATVRQMCEPFAKEAYEALIMLAGLGVYSQLAIKMSRLGN 6932
Range 2: 6614 to 6934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 58/107(54%) | 0/107(0%) | Minus/Minus |
Query 124 VLADLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI 444 +L +L+I +A+C Y P A R S A A GSHI VA PS+TA LS MR+T A FI PL S P+ LL GP I TSP* AFLLVPT A+YPKRV +YI Subject 6614 LLPNLLIFIASCEYTPRPASMIRASYASLAKGSHI*RTVASFATPSVTATLSPRMRLTCSAMFITPLASTPLTLLVRGPII*TSP*CTAFLLVPTSAMYPKRVLKYI 6934
Range 3: 6507 to 6932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 51/142(36%) | 0/142(0%) | Minus/Minus |
Query 17 IG*PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH 442 I *P+HL C LRV + +++ +V LS+ FAHL +L T+ HA S+VY+TP + R +Y+ L IM RL A S+ ++PEE QVH VV + VLTQ+ P + + H + P L+H Subject 6507 IA*PTHLYC*LRVHTQARKHDKSLVCFLSKGFAHLTHSRIFCHTLCNCHTQPPHAVDLFSYVYYTPSIYTPNLISARPHYLNLPIMYRLLAGSN*RNVPEEGPQVHLLVVPSSLRVLTQVGP*QDQCFDHLPHVHPS*YLSH 6932
Range 1: 6488 to 6691 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 38/68(56%) | 0/68(0%) | Plus/Plus |
Query 14 LMGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPN 217 + G +R G +R IEELVL L+ D + G D+ MYL TLFGYIAL GTSKK THY +VDI+G N Subject 6488 MSGATSRTGNLRKEIEELVLTGVVLAPDAKTAGVDKGMYLRTLFGYIALNGTSKKTTHYDDVDIIGNN 6691
Range 2: 6686 to 6904 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 36/73(49%) | 0/73(0%) | Plus/Plus |
Query 215 NASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTR 433 N +T +D RGKINVA+ V +M + S G KGATLRQMCEPFA+ A + L ++A G Y+QLA+K+++ Subject 6686 NNITETSIDSRGKINVATAVRQMLSFSRITPTGAAKGATLRQMCEPFAEEARECLAILASKGIYSQLATKLSK 6904
Range 3: 6715 to 6906 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 28/64(44%) | 0/64(0%) | Minus/Minus |
Query 244 DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPL 435 +L L+A+C +P A + S A A GSHICLRVAP P + + +T +ATFILPL Subject 6715 NLESLVASCE*MPLLANIAKHSLASSAKGSHICLRVAPFAAPVGVILEKLSICLTAVATFILPL 6906
Range 4: 6598 to 6690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 18/31(58%) | 0/31(0%) | Minus/Minus |
Query 124 LGPTISTSP**VAFLLVPTKAIYPKRVFRYI 216 L P ISTS * V F VP A+YP RV RY+ Subject 6598 LFPIISTSS*WVVFFEVPFSAMYPNRVLRYM 6690
Range 1: 6658 to 6858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 34/67(51%) | 0/67(0%) | Plus/Plus |
Query 233 GLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTR 433 G+D RG IN++ V +M S AV G KG TLRQMCEPFA+ A D L ++A L Y++LA KM + Subject 6658 GIDSRGTINISEQVKKMMGYSRAVPSGVCKGLTLRQMCEPFAEEARDCLTILATLRVYSRLALKMAK 6858
Range 2: 6442 to 6639 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 33/66(50%) | 0/66(0%) | Plus/Plus |
Query 14 LMGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVG 211 +M +R +IR+ I EL+ A D G+DR MY TLFGYIAL GTS KA HY VDI+G Subject 6442 VMENISRMAKIRSNISELLCAGVTFVTDARETGFDRPMYFRTLFGYIALTGTSAKAQHYENVDIIG 6639
Range 1: 6727 to 6915 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 30/63(48%) | 0/63(0%) | Plus/Plus |
Query 254 INVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRSAN 442 + VA +V M + + +E P+ TLRQMC PFA AY FL A YTQLA KMTR N Subject 6727 LKVAQVVMYMIAVRNSTTEPPLANLTLRQMCTPFAPEAYLFLRTAASAKIYTQLARKMTRIGN 6915