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Nucleotide Sequence (621 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
63
126
189
252
315
378
441
504
567
621

Descriptions

Alignments

Rosellinia necatrix partitivirus 2 CP gene for capsid protein, complete cds

Sequence ID: AB569998.1 Length: 1828 Number of Matches: 1

Range 1: 381 to 758 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 37/126(29%) 0/126(0%) Plus/Plus
Query        3  HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIPKK  380
                H+ I   +  + + F+P+A M+ +I+  M   L  +   +  +P Y  L +R Y+ I+F +QTLRA+  +  L   +  +L  FL  +   +LPI  PL+  F ++ +  P   QY +V P +P++
Subject    381  HMTIQYASRKKNNTFLPSAFMMMYIIHEMNVLLCEHFYFKREAPNYHPLLLRTYFGILFIIQTLRAQHAANNLFGDQFEFLEKFLDAYPVDTLPIPAPLIHIFKSLCSSRPEIPQYGYVTPFVPEE  758

Rosellinia necatrix partitivirus 2 CP gene for capsid protein, complete cds

Sequence ID: NC_020235.1 Length: 1828 Number of Matches: 1

Range 1: 381 to 758 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 37/126(29%) 0/126(0%) Plus/Plus
Query        3  HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIPKK  380
                H+ I   +  + + F+P+A M+ +I+  M   L  +   +  +P Y  L +R Y+ I+F +QTLRA+  +  L   +  +L  FL  +   +LPI  PL+  F ++ +  P   QY +V P +P++
Subject    381  HMTIQYASRKKNNTFLPSAFMMMYIIHEMNVLLCEHFYFKREAPNYHPLLLRTYFGILFIIQTLRAQHAANNLFGDQFEFLEKFLDAYPVDTLPIPAPLIHIFKSLCSSRPEIPQYGYVTPFVPEE  758

Rosellinia necatrix partitivirus 7 genomic RNA, segment 2, complete sequence, strain: W1142

Sequence ID: LC076695.1 Length: 1896 Number of Matches: 1

Range 1: 430 to 792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 37/121(31%) 0/121(0%) Plus/Plus
Query        9  RIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTI  371
                R+  ++  + +++VP+A+ LF +L   E+ +N ++ ++   P Y    V+VYYA ++Y+Q  RAK +SG +E +E   L+ F ++F   SLP A  +  YF+++     ++ +Y+++ P I
Subject    430  RMIAEHHPQTNYYVPSAIPLFSLLEAAEDRINASKHIQQHEPNYNPYAVKVYYAYMYYMQIFRAKRESGHIEGSELKILKRFEQKFPLNSLPCAEIVYGYFSSLHATELAESKYDWIVPRI  792

Sclerotinia sclerotiorum partitivirus S segment 2, complete sequence

Sequence ID: GQ280378.1 Length: 1852 Number of Matches: 2

Range 1: 450 to 776 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 36/109(33%) 0/109(0%) Plus/Plus
Query       39  SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYP  365
                S + P+   ++ +L  M + +  N  LR   P Y      +YY IIF +Q LRA + +  L +A+  +LR F   F    LP+AGPLV +F N+    P  +++ +V P
Subject    450  STYTPSCWSMYAVLDAMHDLVGDNASLRRFCPYYHVALSNIYYGIIFIIQVLRANQVANNLSQADFQFLRFFESNFALEELPVAGPLVLFFQNLAAFKPDGNRFNWVVP  776

Range 2: 804 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 18/57(32%) 0/57(0%) Plus/Plus
Query      411  GQRLPNVTSAHYLIPSVPIIASLLKDFCTTPTIGNSKFDDDGNYIPFQLTVGGTFAG  581
                G   P V +    +P +P + SLL  F  +     +  D  G + PF    GGT AG
Subject    804  GANSPRVNAQSTALPQLPQMISLLNLFGASNAALLTAMDTAGQWEPFTFAAGGTIAG  974

Sclerotinia sclerotiorum partitivirus S segment 2, complete genome

Sequence ID: NC_013015.1 Length: 1852 Number of Matches: 2

Range 1: 450 to 776 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 36/109(33%) 0/109(0%) Plus/Plus
Query       39  SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYP  365
                S + P+   ++ +L  M + +  N  LR   P Y      +YY IIF +Q LRA + +  L +A+  +LR F   F    LP+AGPLV +F N+    P  +++ +V P
Subject    450  STYTPSCWSMYAVLDAMHDLVGDNASLRRFCPYYHVALSNIYYGIIFIIQVLRANQVANNLSQADFQFLRFFESNFALEELPVAGPLVLFFQNLAAFKPDGNRFNWVVP  776

Range 2: 804 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 18/57(32%) 0/57(0%) Plus/Plus
Query      411  GQRLPNVTSAHYLIPSVPIIASLLKDFCTTPTIGNSKFDDDGNYIPFQLTVGGTFAG  581
                G   P V +    +P +P + SLL  F  +     +  D  G + PF    GGT AG
Subject    804  GANSPRVNAQSTALPQLPQMISLLNLFGASNAALLTAMDTAGQWEPFTFAAGGTIAG  974