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Queries

Nucleotide Sequence (493 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
493

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate 81 coat protein (CP) gene, partial cds

Sequence ID: KU362270.1 Length: 599 Number of Matches: 9

Range 1: 61 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.0 bits(751) 0.0 139/154(90%) 0/154(0%) Plus/Minus
Query       27  DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQ  488
                DNGPFNLLISQFPLAVTI*IHKILFFALCIW RAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSCC+RWCNQA SGWYYYRNLHVLWWFKDD+HLRI ++FCDIKSSFKLVTHF SG+L IP*TLTR RSRLAK ITSRSLHEHI I+
Subject     61  DNGPFNLLISQFPLAVTI*IHKILFFALCIW*RAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCCHRWCNQAGSGWYYYRNLHVLWWFKDDIHLRISKDFCDIKSSFKLVTHFTSGHLRIP*TLTRRRSRLAK*ITSRSLHEHILIR  522

Range 2: 57 to 524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
306.7 bits(663) 0.0 137/156(88%) 0/156(0%) Minus/Plus
Query       25  FAGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR  492
                +AG  CVREGTGRLF SPISTF GSA RG+*G QT NG*QA*KNF*YRRN + S*DE+HL*TTKGHGGFGSSTNRT LGYTSG NSYFNRIKKFM *SDG*YGSEKSHRLLLGNAA DVDI*HV RYREQRRVFCEFI**RRAEIDL*EG*RGHC+
Subject     57  YAG*VCVREGTGRLFTSPISTFYGSAFRGF*GGQT*NG*QA*KNF*YRRNLY*S*DEYHL*TTKGHGGFGSSTNRTRLGYTSGGNSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAAIDVDI*HVTRYREQRRVFCEFI**RRAEIDL*EG*RGHCQ  524

Range 3: 307 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(360) 0.0 72/72(100%) 0/72(0%) Minus/Plus
Query       27  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  242
                ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV
Subject    307  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  522

Range 4: 64 to 258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.9 bits(316) 0.0 61/65(94%) 0/65(0%) Minus/Plus
Query      291  DANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  485
                D  VFVKGPGGYSLRQSRPSTGQR GD+EVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME
Subject     64  DEYVFVKGPGGYSLRQSRPSTGQRSGDSEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  258

Range 5: 59 to 523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.9 bits(622) 0.0 140/155(90%) 0/155(0%) Minus/Plus
Query       26  CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  490
                C M MCS*RDREVI FANLDL RVSV GILR PD KWVTSLKELLISQK   ILR* SSLNHQRTWRFR**YQPD AWLHQR QQLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLAR QIQRAKKSIL*IYIVTASGN*LMRRLKGPLS
Subject     59  CRMSMCS*RDREVIHFANLDLLRVSVQGILRWPDVKWVTSLKELLISQKSLLILR*ISSLNHQRTWRFR**YQPDPAWLHQRWQQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARHQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  523

Range 6: 306 to 521 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 71/72(99%) 0/72(0%) Plus/Minus
Query       28  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  243
                TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNI+CSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA
Subject    306  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNINCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  521

Range 7: 63 to 257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 59/65(91%) 0/65(0%) Plus/Minus
Query      292  SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFAS  486
                SMSFGGSKM+FISG VKISAILKVLLSLSPISRLATS SP R*PVEGRDWRSE*PPGPFTNT++S
Subject     63  SMSFGGSKMIFISGLVKISAILKVLLSLSPISRLATSESPER*PVEGRDWRSE*PPGPFTNTYSS  257

Range 8: 332 to 520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 60/63(95%) 0/63(0%) Plus/Minus
Query       29  QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF  217
                QWPL*PSHKSISARRYYINSQNTLLCSLYL TC*MSTS+AALPRRSL*DFSDPYYPSLQ INF
Subject    332  QWPL*PSHKSISARRYYINSQNTLLCSLYLVTC*MSTSIAALPRRSL*DFSDPYYPSLQHINF  520

Range 9: 59 to 238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 50/60(83%) 0/60(0%) Plus/Minus
Query      311  QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPA  490
                QR* SSQD *+FLRY*KFF*ACHPF VW PQ PL+ADP KVEIGE NNLPVPSRTH+HPA
Subject     59  QR*YSSQD**RFLRY*KFF*ACHPFHVWPPQNPLNADP*KVEIGEVNNLPVPSRTHTHPA  238

Grapevine leafroll associated virus 1 isolate LN KTST coat protein gene, partial cds

Sequence ID: KP067352.1 Length: 855 Number of Matches: 9

Range 1: 156 to 620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
333.3 bits(721) 0.0 134/155(86%) 0/155(0%) Plus/Minus
Query       27  DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ  491
                DNGPFNLLISQFPLAVT+*+HKILFFALCIWRRAK QHQLQHCQEEVCETFLIRITHHFS *IF*FC*N C +RWCNQA SGWYYYRNLHVLWWFKDD+HL I E+FCDIKSSFKLV H  SG+L IP*TLTR*RSRLAK ITS SLHEHI I+Q
Subject    156  DNGPFNLLISQFPLAVTV*VHKILFFALCIWRRAKSQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NGCRHRWCNQAGSGWYYYRNLHVLWWFKDDIHLGISEDFCDIKSSFKLVAHITSGHLGIP*TLTR*RSRLAK*ITSWSLHEHILIRQ  620

Range 2: 405 to 620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(359) 0.0 71/72(99%) 0/72(0%) Minus/Plus
Query       27  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  242
                ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGA+V
Subject    405  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAVV  620

Range 3: 156 to 356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.8 bits(318) 0.0 61/67(91%) 0/67(0%) Minus/Plus
Query      291  LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  491
                L D NVFVKGPGGYSLRQSRPSTGQR GD+EV RR+MGDKLKRTFNIAEIFTNPEMNIIFEPPKDME
Subject    156  LPDENVFVKGPGGYSLRQSRPSTGQRSGDSEVTRRDMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  356

Range 4: 155 to 622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
284.7 bits(615) 0.0 128/156(82%) 0/156(0%) Minus/Plus
Query       25  FAGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR  492
                FAG ECVREGT RLF SPISTFNGSA RG+ G QT  G QA*KNF*YRRN H S DE+HL*TTKGHGGFG+STNRT LGYTSG +S+FNRIKKFM *SDG*YGSEKSHRLLLGN A DVD *HVARYREQRRVFCE I *RRAE DL*EG*RG C+
Subject    155  FAG*ECVREGTRRLFTSPISTFNGSAFRGFRGDQT*YGRQA*KNF*YRRNLH*SRDEYHL*TTKGHGGFGNSTNRTRLGYTSGGDSHFNRIKKFMC*SDG*YGSEKSHRLLLGNVAIDVDF*HVARYREQRRVFCELIQ*RRAETDL*EG*RGRCQ  622

Range 5: 154 to 621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
280.6 bits(606) 0.0 136/156(87%) 0/156(0%) Minus/Plus
Query       26  FCWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  493
                FC MRMCS*RD+EVI FANLDLQRVSV GI R*PD  W TSLKELLISQK S I R* SSLNHQRTWRFR**YQPD AWLHQR +Q FQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C* LARRQIQRAKKSIL* Y VTASGN*LMRRLKGPLS
Subject    154  FCRMRMCS*RDQEVIHFANLDLQRVSVQGIPR*PDVIWATSLKELLISQKSSLIPR*ISSLNHQRTWRFR**YQPDPAWLHQRWRQPFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*LLARRQIQRAKKSIL*TYTVTASGN*LMRRLKGPLS  621

Range 6: 404 to 619 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 66/72(92%) 0/72(0%) Plus/Minus
Query       28  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  243
                T APLTFS*V+FRSPLLYKFTKYSSLLSVSGDVL VNI+C+IAKKKSVRLF*SVLPITSAHKFFNSVE+AVA
Subject    404  TTAPLTFS*VSFRSPLLYKFTKYSSLLSVSGDVLKVNINCNIAKKKSVRLF*SVLPITSAHKFFNSVEMAVA  619

Range 7: 155 to 355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 60/67(90%) 0/67(0%) Plus/Minus
Query      292  SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK  492
                SMSFGGSKM+FISG VKISAILKVLLSLSPISRL TS SP R*PVEGRDWRSE*PPGPFTNTF+S K
Subject    155  SMSFGGSKMIFISGLVKISAILKVLLSLSPISRLVTSESPER*PVEGRDWRSE*PPGPFTNTFSSGK  355

Range 8: 430 to 618 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.4 bits(276) 0.0 55/63(87%) 0/63(0%) Plus/Minus
Query       29  QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF  217
                Q PL*PSHKS+SARRY I+SQNTLLCSLYLATC* STS+A LPRRSL*DFSDPYYPSLQ INF
Subject    430  QRPL*PSHKSVSARRYCISSQNTLLCSLYLATC*KSTSIATLPRRSL*DFSDPYYPSLQHINF  618

Range 9: 154 to 336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 48/61(79%) 0/61(0%) Plus/Minus
Query      311  QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK  493
                QR* SS+D *+FLRY*KFF*AC P+ VW P+ PL+ADPLKVEIGE NNL VPSRTHSHPAK
Subject    154  QR*YSSRD**RFLRY*KFF*ACRPYHVWSPRNPLNADPLKVEIGEVNNLLVPSRTHSHPAK  336

Grapevine leafroll associated virus 1 isolate 129 coat protein (CP) gene, partial cds

Sequence ID: KU362275.1 Length: 599 Number of Matches: 9

Range 1: 58 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.9 bits(742) 0.0 139/155(90%) 0/155(0%) Plus/Minus
Query       27  DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ  491
                DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSC +RWC+QA SGWYYYRNLHVLWWFKDD+HL I ENFCDIKSSFKLVTHF SG+L IP*TLT  RSRLAK ITSRSLHEHI I+Q
Subject     58  DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCRHRWCDQAGSGWYYYRNLHVLWWFKDDIHLGISENFCDIKSSFKLVTHFTSGHLRIP*TLTCRRSRLAK*ITSRSLHEHILIRQ  522

Range 2: 60 to 524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.8 bits(661) 0.0 137/155(88%) 0/155(0%) Minus/Plus
Query       25  AGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR  489
                AG ECVREGTGRLF SPISTF  SA RG+*G QT +G*QA*KNF*YRRNFH S DE+HL*TTKGHGGFGSSTNRT LG+TSG +SYFNRIKKFM *SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHC+
Subject     60  AG*ECVREGTGRLFTSPISTFYRSAFRGF*GGQT*SG*QA*KNF*YRRNFH*SRDEYHL*TTKGHGGFGSSTNRTRLGHTSGGDSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCQ  524

Range 3: 307 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(360) 0.0 72/72(100%) 0/72(0%) Minus/Plus
Query       27  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  242
                ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV
Subject    307  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  522

Range 4: 58 to 258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.2 bits(321) 0.0 62/67(93%) 0/67(0%) Minus/Plus
Query      291  LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  491
                L D NVFVKGPGGYSLRQSRPSTGQR GD+EVARRE+GDKLKRTFNIAEIFTNPEMNIIFEPPKDME
Subject     58  LPDENVFVKGPGGYSLRQSRPSTGQRSGDSEVARREVGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  258

Range 5: 59 to 523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.6 bits(630) 0.0 140/155(90%) 0/155(0%) Minus/Plus
Query       26  CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  490
                C MRMCS*RDREVI FANLDL +VSV GILR PD KWVTSLKELLISQKFS I R* SSLNHQRTWRFR**YQPD AW HQR +QLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS
Subject     59  CRMRMCS*RDREVIHFANLDLLQVSVQGILRWPDVKWVTSLKELLISQKFSLIPR*ISSLNHQRTWRFR**YQPDPAWSHQRWRQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  523

Range 6: 306 to 521 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 72/72(100%) 0/72(0%) Plus/Minus
Query       28  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  243
                TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA
Subject    306  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  521

Range 7: 57 to 257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 60/67(90%) 0/67(0%) Plus/Minus
Query      292  SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK  492
                SMSFGGSKM+FISG VKISAILKVLLSLSP SRLATS SP R*PVEGRDWRSE*PPGPFTNTF+S K
Subject     57  SMSFGGSKMIFISGLVKISAILKVLLSLSPTSRLATSESPER*PVEGRDWRSE*PPGPFTNTFSSGK  257

Range 8: 332 to 520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 62/63(98%) 0/63(0%) Plus/Minus
Query       29  QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF  217
                QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQ INF
Subject    332  QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQHINF  520

Range 9: 56 to 238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 49/61(80%) 0/61(0%) Plus/Minus
Query      311  QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK  493
                QR* SS+D *KFLRY*KFF*ACHP  VW PQ PL+AD  KVEIGE NNLPVPSRTHSHPA+
Subject     56  QR*YSSRD**KFLRY*KFF*ACHPLHVWPPQNPLNADL*KVEIGEVNNLPVPSRTHSHPAR  238

Grapevine leafroll associated virus 1 isolate 130 coat protein (CP) gene, partial cds

Sequence ID: KU362276.1 Length: 599 Number of Matches: 9

Range 1: 58 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
337.4 bits(730) 0.0 136/155(88%) 0/155(0%) Plus/Minus
Query       27  DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ  491
                DNGPFNLLISQFPLAVTI*IHKIL FALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSC +RWC+QA SGWYYYRNLH+LWWFKDD+HL I ENFCDIKSSFKLVTHF SGYL IP*TL+  RSRLA  ITSRSLHEHI I+Q
Subject     58  DNGPFNLLISQFPLAVTI*IHKILLFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCRHRWCDQAGSGWYYYRNLHILWWFKDDIHLGISENFCDIKSSFKLVTHFTSGYLRIP*TLSCRRSRLAM*ITSRSLHEHILIRQ  522

Range 2: 60 to 524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
304.9 bits(659) 0.0 137/155(88%) 0/155(0%) Minus/Plus
Query       25  AGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR  489
                AG ECVREGTGRLF SPISTF  SA RG+*GSQT NG*QA*KNF*YRRNFH S DE+HL*TTKG+GGFGSSTNRT LG+TSG +SYFNRIKKFM *SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQR VFCEFI**RRAEIDL*EG*RGHC+
Subject     60  AG*ECVREGTGRLFTSPISTFYSSAFRGF*GSQT*NG*QA*KNF*YRRNFH*SRDEYHL*TTKGYGGFGSSTNRTRLGHTSGGDSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRGVFCEFI**RRAEIDL*EG*RGHCQ  524

Range 3: 307 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(360) 0.0 72/72(100%) 0/72(0%) Minus/Plus
Query       27  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  242
                ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV
Subject    307  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  522

Range 4: 58 to 258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.1 bits(312) 0.0 61/67(91%) 0/67(0%) Minus/Plus
Query      291  LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  491
                L D NVFVKGPGGYS RQSRPST QR GD+EVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME
Subject     58  LPDENVFVKGPGGYSHRQSRPSTAQRSGDSEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  258

Range 5: 59 to 523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
285.6 bits(617) 0.0 137/155(88%) 0/155(0%) Minus/Plus
Query       26  CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  490
                C MRMCS*RDREVI  ANLDL ++SV GILR*PD KWVTSLKELLISQKFS I R* SSLNHQR WRFR**YQPD AW HQR +QLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAK+SIL*IYIVTASGN*LMRRLKGPLS
Subject     59  CRMRMCS*RDREVIHIANLDLLQLSVQGILR*PDVKWVTSLKELLISQKFSLIPR*ISSLNHQRIWRFR**YQPDPAWSHQRWRQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKRSIL*IYIVTASGN*LMRRLKGPLS  523

Range 6: 306 to 521 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 72/72(100%) 0/72(0%) Plus/Minus
Query       28  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  243
                TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA
Subject    306  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  521

Range 7: 57 to 257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 58/67(87%) 0/67(0%) Plus/Minus
Query      292  SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK  492
                S+SFGGSKM+FISG VKISAILKVLLSLSPISRLATS SP R* VEGRDWR E*PPGPFTNTF+S K
Subject     57  SISFGGSKMIFISGLVKISAILKVLLSLSPISRLATSESPER*AVEGRDWRCE*PPGPFTNTFSSGK  257

Range 8: 332 to 520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 61/63(97%) 0/63(0%) Plus/Minus
Query       29  QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF  217
                QWPL*PSHKSISARRYYINSQNT LCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQ INF
Subject    332  QWPL*PSHKSISARRYYINSQNTPLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQHINF  520

Range 9: 56 to 238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 49/61(80%) 0/61(0%) Plus/Minus
Query      311  QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK  493
                QR* SS+D *KFLRY*KFF*ACHPF VWLPQ PL+A+  KVEIG+ NNLPVPSRTHSHPA+
Subject     56  QR*YSSRD**KFLRY*KFF*ACHPFHVWLPQNPLNAEL*KVEIGDVNNLPVPSRTHSHPAR  238

Grapevine leafroll associated virus 1 isolate 147 coat protein (CP) gene, partial cds

Sequence ID: KU362278.1 Length: 599 Number of Matches: 9

Range 1: 58 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
337.4 bits(730) 0.0 136/155(88%) 0/155(0%) Plus/Minus
Query       27  DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ  491
                DNGPFNLLISQFPLAVTI*IHKIL FALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSC +RWC+QA SGWYYYRNLH+LWWFKDD+HL I ENFCDIKSSFKLVTHF SGYL IP*TL+  RSRLA  ITSRSLHEHI I+Q
Subject     58  DNGPFNLLISQFPLAVTI*IHKILLFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCRHRWCDQAGSGWYYYRNLHILWWFKDDIHLGISENFCDIKSSFKLVTHFTSGYLRIP*TLSCRRSRLAM*ITSRSLHEHILIRQ  522

Range 2: 60 to 524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
304.9 bits(659) 0.0 137/155(88%) 0/155(0%) Minus/Plus
Query       25  AGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR  489
                AG ECVREGTGRLF SPISTF  SA RG+*GSQT NG*QA*KNF*YRRNFH S DE+HL*TTKG+GGFGSSTNRT LG+TSG +SYFNRIKKFM *SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQR VFCEFI**RRAEIDL*EG*RGHC+
Subject     60  AG*ECVREGTGRLFTSPISTFYSSAFRGF*GSQT*NG*QA*KNF*YRRNFH*SRDEYHL*TTKGYGGFGSSTNRTRLGHTSGGDSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRGVFCEFI**RRAEIDL*EG*RGHCQ  524

Range 3: 307 to 522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(360) 0.0 72/72(100%) 0/72(0%) Minus/Plus
Query       27  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  242
                ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV
Subject    307  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  522

Range 4: 58 to 258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.1 bits(312) 0.0 61/67(91%) 0/67(0%) Minus/Plus
Query      291  LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  491
                L D NVFVKGPGGYS RQSRPST QR GD+EVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME
Subject     58  LPDENVFVKGPGGYSHRQSRPSTAQRSGDSEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  258

Range 5: 59 to 523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
285.6 bits(617) 0.0 137/155(88%) 0/155(0%) Minus/Plus
Query       26  CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  490
                C MRMCS*RDREVI  ANLDL ++SV GILR*PD KWVTSLKELLISQKFS I R* SSLNHQR WRFR**YQPD AW HQR +QLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAK+SIL*IYIVTASGN*LMRRLKGPLS
Subject     59  CRMRMCS*RDREVIHIANLDLLQLSVQGILR*PDVKWVTSLKELLISQKFSLIPR*ISSLNHQRIWRFR**YQPDPAWSHQRWRQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKRSIL*IYIVTASGN*LMRRLKGPLS  523

Range 6: 306 to 521 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 72/72(100%) 0/72(0%) Plus/Minus
Query       28  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  243
                TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA
Subject    306  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  521

Range 7: 57 to 257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 58/67(87%) 0/67(0%) Plus/Minus
Query      292  SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK  492
                S+SFGGSKM+FISG VKISAILKVLLSLSPISRLATS SP R* VEGRDWR E*PPGPFTNTF+S K
Subject     57  SISFGGSKMIFISGLVKISAILKVLLSLSPISRLATSESPER*AVEGRDWRCE*PPGPFTNTFSSGK  257

Range 8: 332 to 520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 61/63(97%) 0/63(0%) Plus/Minus
Query       29  QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF  217
                QWPL*PSHKSISARRYYINSQNT LCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQ INF
Subject    332  QWPL*PSHKSISARRYYINSQNTPLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQHINF  520

Range 9: 56 to 238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 49/61(80%) 0/61(0%) Plus/Minus
Query      311  QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK  493
                QR* SS+D *KFLRY*KFF*ACHPF VWLPQ PL+A+  KVEIG+ NNLPVPSRTHSHPA+
Subject     56  QR*YSSRD**KFLRY*KFF*ACHPFHVWLPQNPLNAEL*KVEIGDVNNLPVPSRTHSHPAR  238

Nucleotide Sequence (425 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
425

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
289.3 1059.4 24% 1.826e-76 59% JQ023131.1
289.3 1059.4 24% 1.826e-76 59% NC_016509.1
287.9 1077.2 23% 4.734e-76 61% KU674796.1
287.9 1086.4 23% 4.734e-76 61% KU674797.1

Alignments

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 3221 to 3616 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
289.3 bits(625) 0.0 123/132(93%) 0/132(0%) Plus/Plus
Query       27  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDIL  422
                LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ MRA EKAKAE KGLEVD ++ITEDDIL
Subject   3221  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSMRAAEKAKAESKGLEVDEREITEDDIL  3616

Range 2: 3211 to 3528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 89/106(84%) 0/106(0%) Minus/Minus
Query       17  RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK  334
                RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKT+QFH   +
Subject   3211  RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTIQFHKFPR  3528

Range 3: 3221 to 3619 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 79/133(59%) 0/133(0%) Minus/Minus
Query       27  RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ  425
                RQ+II      I+   F L  RL    H  QN V   + ILSDL++RPV ++QPVSH +LIQ* RSISET +  RHQM*R+ GR  TYE KIL+HQ++Q+RP  LQH QS+L+HPRKERATKLPYDQ+D IPQ
Subject   3221  RQDIIFSDFSLINLQTFALSLRLFCGSHAPQNFVRFTN*ILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RHRGRNRTYEPKILIHQHVQIRPQRLQHSQSVLIHPRKERATKLPYDQNDTIPQ  3619

Range 4: 3222 to 3530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 67/103(65%) 0/103(0%) Plus/Plus
Query       28  CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF*  336
                CGI S *SYGSFVALSFRG* S L* CCR  G  W  *W +IF SYV++ P+ RYIWWR+   VSLIDR YWMR *WLTGC   TGR  RSLRI   + T+F*
Subject   3222  CGIVSF*SYGSFVALSFRG*MSTL*LCCRRWGLIWTC*WIKIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRI*FVKRTKF*  3530

Range 5: 3217 to 3486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 60/90(67%) 0/90(0%) Plus/Plus
Query       23  DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH  292
                ++VEL+R DRTEAL*LFLFGDE V FD  AG  V  G  DG +FSVRTY + H  ATSGGG+  LFH**IDVIG*G +GLQVA   RDE+
Subject   3217  ELVELYRFDRTEAL*LFLFGDE*VRFDYVAGAGV*SGRVDGSKFSVRTYGSCHGDATSGGGDQPLFH**IDVIG*GFDGLQVAPP*RDEY  3486

Range 6: 3234 to 3464 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 53/77(69%) 0/77(0%) Minus/Minus
Query       40  ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRR  270
                ATCKP  PHPITSIYQ*N+   PPPDVA  W   YVRTEN  PS  P  T  PA  SK T SSPKRKSYKASVRS+R
Subject   3234  ATCKPSNPHPITSIYQ*NKGWSPPPDVASPWQEPYVRTENFDPSTRPD*TPAPAT*SKRTHSSPKRKSYKASVRSKR  3464

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6

Range 1: 3221 to 3616 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
289.3 bits(625) 0.0 123/132(93%) 0/132(0%) Plus/Plus
Query       27  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDIL  422
                LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ MRA EKAKAE KGLEVD ++ITEDDIL
Subject   3221  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSMRAAEKAKAESKGLEVDEREITEDDIL  3616

Range 2: 3211 to 3528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 89/106(84%) 0/106(0%) Minus/Minus
Query       17  RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK  334
                RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKT+QFH   +
Subject   3211  RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTIQFHKFPR  3528

Range 3: 3221 to 3619 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 79/133(59%) 0/133(0%) Minus/Minus
Query       27  RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ  425
                RQ+II      I+   F L  RL    H  QN V   + ILSDL++RPV ++QPVSH +LIQ* RSISET +  RHQM*R+ GR  TYE KIL+HQ++Q+RP  LQH QS+L+HPRKERATKLPYDQ+D IPQ
Subject   3221  RQDIIFSDFSLINLQTFALSLRLFCGSHAPQNFVRFTN*ILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RHRGRNRTYEPKILIHQHVQIRPQRLQHSQSVLIHPRKERATKLPYDQNDTIPQ  3619

Range 4: 3222 to 3530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 67/103(65%) 0/103(0%) Plus/Plus
Query       28  CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF*  336
                CGI S *SYGSFVALSFRG* S L* CCR  G  W  *W +IF SYV++ P+ RYIWWR+   VSLIDR YWMR *WLTGC   TGR  RSLRI   + T+F*
Subject   3222  CGIVSF*SYGSFVALSFRG*MSTL*LCCRRWGLIWTC*WIKIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRI*FVKRTKF*  3530

Range 5: 3217 to 3486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 60/90(67%) 0/90(0%) Plus/Plus
Query       23  DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH  292
                ++VEL+R DRTEAL*LFLFGDE V FD  AG  V  G  DG +FSVRTY + H  ATSGGG+  LFH**IDVIG*G +GLQVA   RDE+
Subject   3217  ELVELYRFDRTEAL*LFLFGDE*VRFDYVAGAGV*SGRVDGSKFSVRTYGSCHGDATSGGGDQPLFH**IDVIG*GFDGLQVAPP*RDEY  3486

Range 6: 3234 to 3464 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 53/77(69%) 0/77(0%) Minus/Minus
Query       40  ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRR  270
                ATCKP  PHPITSIYQ*N+   PPPDVA  W   YVRTEN  PS  P  T  PA  SK T SSPKRKSYKASVRS+R
Subject   3234  ATCKPSNPHPITSIYQ*NKGWSPPPDVASPWQEPYVRTENFDPSTRPD*TPAPAT*SKRTHSSPKRKSYKASVRSKR  3464

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6

Range 1: 3297 to 3695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.9 bits(622) 0.0 122/133(92%) 0/133(0%) Plus/Plus
Query       27  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDILA  425
                LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+  RA EKAKAE KGLEVD +++TEDDILA
Subject   3297  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSKRAAEKAKAESKGLEVDEREVTEDDILA  3695

Range 2: 3287 to 3604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.1 bits(439) 0.0 89/106(84%) 0/106(0%) Minus/Minus
Query       17  RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK  334
                RIL ASRTRSLATL+FVP RRCNL*AI PSS+N+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKTMQFH + +
Subject   3287  RILCASRTRSLATLIFVPLRRCNL*AIKPSSSNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTMQFHKLPR  3604

Range 3: 3297 to 3695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.0 bits(393) 0.0 81/133(61%) 0/133(0%) Minus/Minus
Query       27  RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ  425
                RQ+II      ++   F LG RL  SP   QNL+   ++ILSDL++RPV ++QPVSH +LIQ* RSISET +  RHQM*R  GR  TY+ KIL+HQ++Q+RP* LQH QS+L+HPRKERATKLP DQDDAIPQ
Subject   3297  RQDIIFSDFSLVNLQTFTLGLRLFCSPFAPQNLMRFTNKILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RYRGRNRTYKPKILIHQHVQIRP*RLQHSQSVLIHPRKERATKLPNDQDDAIPQ  3695

Range 4: 3298 to 3621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.7 bits(329) 0.0 71/108(66%) 0/108(0%) Plus/Plus
Query       28  CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF*SL*GL  351
                CGIASS*S+GSFVALSFRG* S L* CCR *G  W  *W RIF  YV++ P+ RYIWWR+   VSLIDR YWMR *WLTGC   TGR  RSLRI   +  RF*   GL
Subject   3298  CGIASS*SFGSFVALSFRG*MSTL*LCCRR*GLIWTC*WIRIFGLYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRILFVKRIRF*GAKGL  3621

Range 5: 3296 to 3562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 61/89(69%) 0/89(0%) Plus/Plus
Query       26  VVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH  292
                +VELHRLDR+EAL*LFLFGDE V FD  AG RV  G  DG EFSV TY + H  ATSGGG+  LFH**IDV G*G +GLQVA   RDE+
Subject   3296  LVELHRLDRSEAL*LFLFGDE*VRFDYVAGARV*SGRVDGSEFSVCTYGSCHGNATSGGGDQPLFH**IDVTG*GFDGLQVAPP*RDEY  3562

Range 6: 3307 to 3540 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 54/78(69%) 0/78(0%) Minus/Minus
Query       37  ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRRC  270
                ATCKP  PHP+TSIYQ*N+   PPPDVA  W   YV+TENS PS  P  TL PA  SK T SSPKRKSYKAS RSRRC
Subject   3307  ATCKPSNPHPVTSIYQ*NKGWSPPPDVALPWQEPYVQTENSDPSTRPD*TLAPAT*SKRTHSSPKRKSYKASERSRRC  3540

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6

Range 1: 3362 to 3760 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.9 bits(622) 0.0 122/133(92%) 0/133(0%) Plus/Plus
Query       27  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDILA  425
                LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+  RA EKAKAE KGLEVD +++TEDDILA
Subject   3362  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSKRAAEKAKAESKGLEVDEREVTEDDILA  3760

Range 2: 3352 to 3669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 90/106(85%) 0/106(0%) Minus/Minus
Query       17  RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK  334
                RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKTMQFH   +
Subject   3352  RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPNACNIVKAYSFIPEKKELQSFRTIKTMQFHKFPR  3669

Range 3: 3362 to 3760 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.0 bits(393) 0.0 81/133(61%) 0/133(0%) Minus/Minus
Query       27  RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ  425
                RQ+II      I+   F LG RL   P   QNL+   + ILSDL++RP+ +MQPVSH +LIQ* RSISET +  RHQM*R  GR  TYE KIL+HQ++Q+RP* LQH QS+L+HPRKERATKLPYDQD+A+PQ
Subject   3362  RQDIIFSDFSLINLQTFTLGLRLFCGPFAPQNLMRFTN*ILSDLDIRPITEMQPVSHQTLIQ*HRSISETRVGLRHQM*RYRGRNRTYEPKILIHQHVQIRP*RLQHRQSVLIHPRKERATKLPYDQDNAVPQ  3760

Range 4: 3363 to 3683 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 70/107(65%) 0/107(0%) Plus/Plus
Query       28  CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF*SL*G  348
                CG A S*SYGSFVALSFRG* S L*+CCR *G  W  *W RIF SYV++ P+ RYIWWR+   VSLIDR YWMR *WLTGCI   GR  RSLRI   +  RF*   G
Subject   3363  CGTALS*SYGSFVALSFRG*MSTL*RCCRR*GLIWTC*WIRIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCISVMGRISRSLRI*FVKRIRF*GAKG  3683

Range 5: 3358 to 3627 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 63/90(70%) 0/90(0%) Plus/Plus
Query       23  DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH  292
                ++VELH LDRTEAL*LFLFGDE V FD+ AG+RV  G  DG EFSVRTY + H  ATSGGG+  LFH**IDVIG*G +GLQVAS   DE+
Subject   3358  ELVELHCLDRTEAL*LFLFGDE*VRFDDVAGVRV*SGRVDGSEFSVRTYGSCHGNATSGGGDQPLFH**IDVIG*GFDGLQVASP*WDEY  3627

Range 6: 3372 to 3605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.5 bits(272) 0.0 56/78(72%) 0/78(0%) Minus/Minus
Query       37  ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRRC  270
                ATCKP  PHPITSIYQ*N+   PPPDVA  W   YVRTENS PS  P  TL PA  SK T SSPKRKSYKASVRSR+C
Subject   3372  ATCKPSNPHPITSIYQ*NKGWSPPPDVALPWQEPYVRTENSDPSTRPD*TLTPATSSKRTHSSPKRKSYKASVRSRQC  3605

Nucleotide Sequence (792 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
80
160
240
320
400
480
560
640
720
792

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
45.1 290.3 22% 3.228e-07 42% KU674796.1
46.0 182.2 16% 1.344e-06 38% KU674797.1
45.1 173.0 16% 0.0001668 36% JQ023131.1
45.1 173.0 16% 0.0001668 36% NC_016509.1

Alignments

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8

Range 1: 852 to 914 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 16/21(76%) 0/21(0%) Plus/Minus
Query        4  KIFLNGNQIFLSEDGFDCHIF  66
                KIFL+GNQ+FLSEDG +CH F
Subject    852  KIFLDGNQVFLSEDGLNCHDF  914

Range 2: 326 to 460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 19/45(42%) 0/45(0%) Plus/Minus
Query      521  QESQKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT  655
                +  ++RK    R + +E KL  RP* KGNEK ++ K *EG  ++T
Subject    326  ENKKERKEKEKR*KSKEKKLVLRP*VKGNEKGEVKKW*EGSDIST  460

Range 3: 261 to 332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 12/24(50%) 0/24(0%) Plus/Minus
Query      714  *HSGEKGKIAKRTRRNRQNVFLFV  785
                *HS EKGK  +R+RR ++    FV
Subject    261  *HSREKGKKRRRSRRIKR*SMCFV  332

Range 4: 853 to 915 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 17/21(81%) 0/21(0%) Plus/Minus
Query        3  ENLFEWKSNLLERRWV*LPYF  65
                ENLF WKS+LLERRW *LP F
Subject    853  ENLFGWKSSLLERRWT*LP*F  915

Range 5: 196 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 19/42(45%) 0/42(0%) Plus/Minus
Query      530  QKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT  655
                +KRK    + + +EMK   RP*KKGNEK  +   *EG  ++T
Subject    196  RKRKEEEKK*KNKEMKYVLRP*KKGNEKADVRGW*EGSGIST  321

Range 6: 852 to 917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 20/22(91%) 0/22(0%) Minus/Plus
Query        1  KNMAVKPIFAQEDLISIQKDFR  66
                K MAVK IFAQEDLISIQKDFR
Subject    852  KIMAVKSIFAQEDLISIQKDFR  917

Range 7: 202 to 294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/31(48%) 0/31(0%) Minus/Plus
Query      557  NRSPFLSFHYLFFFVSFLSRTAIQLHFFFSL  649
                N +PF    Y+  FVSFLS T   LH F  L
Subject    202  NTTPFSPPSYICLFVSFLSGTKHILHLFILL  294

Range 8: 124 to 216 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 18/31(58%) 0/31(0%) Minus/Plus
Query      700  QTRRTKIRFVCXXXXXXXXXXXXXSVNCTPF  792
                QTRR   RFVC  SS +  FL L S N TPF
Subject    124  QTRRAV*RFVCLFSSLTFLFLFLSSANTTPF  216

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 5

Range 1: 917 to 979 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 16/21(76%) 0/21(0%) Plus/Minus
Query        4  KIFLNGNQIFLSEDGFDCHIF  66
                KIFLNGNQ+F+SEDG +CH F
Subject    917  KIFLNGNQVFVSEDGLNCHDF  979

Range 2: 196 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 19/42(45%) 0/42(0%) Plus/Minus
Query      530  QKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT  655
                +KRK    +    EMK   RP*KKGNEK  + + *EG  ++T
Subject    196  RKRKEKKKK*ESREMKCVLRP*KKGNEKGDVREW*EGSGIST  321

Range 3: 918 to 980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/21(81%) 0/21(0%) Plus/Minus
Query        3  ENLFEWKSNLLERRWV*LPYF  65
                ENLFEWKS+L ERRW *LP F
Subject    918  ENLFEWKSSLRERRWT*LP*F  980

Range 4: 391 to 525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 17/45(38%) 0/45(0%) Plus/Minus
Query      521  QESQKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT  655
                +  ++RK    R + +E K    P* KGNEK ++ K *EG  + T
Subject    391  ENEKERKEKEKR*KSKEKKQVLSP*VKGNEKGEMKKW*EGSDICT  525

Range 5: 323 to 394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 10/24(42%) 0/24(0%) Plus/Minus
Query      652  HSREKGKNAERLKKRKERSAVNTQ  723
                HSREKGK    +++  E S ++T+
Subject    323  HSREKGKKRRDVREW*EGSGISTR  394

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 5

Range 1: 776 to 841 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 20/22(91%) 0/22(0%) Minus/Plus
Query        1  KNMAVKPIFAQEDLISIQKDFR  66
                K MAVK IFAQEDLISIQKDFR
Subject    776  KIMAVKSIFAQEDLISIQKDFR  841

Range 2: 132 to 203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 13/24(54%) 0/24(0%) Minus/Plus
Query      572  SPFLSFHYLFFFVSFLSRTAIQLH  643
                +PF    YL  FVSFLS T   LH
Subject    132  TPFSLPFYLSLFVSFLSGTKYILH  203

Range 3: 332 to 436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 15/35(43%) 0/35(0%) Minus/Plus
Query      197  FSLVFTLSFLRFLC*VFFAPFYPSLSIAFPF*LSF  301
                FSL+F+L  L FL  +FF   Y S    F   +SF
Subject    332  FSLLFSLFSLSFLSFLFFI*LYLSAFFLFVSFISF  436

Range 4: 776 to 838 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 15/21(71%) 0/21(0%) Plus/Minus
Query        4  KIFLNGNQIFLSEDGFDCHIF  66
                KIFLNGNQ+FL +DG +CH F
Subject    776  KIFLNGNQVFLCKDGLNCHDF  838

Range 5: 250 to 384 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 16/45(36%) 0/45(0%) Plus/Minus
Query      521  QESQKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT  655
                +  ++RK    R++ +E K   RP* KGN+K ++ K *E   ++T
Subject    250  KNKKERKDKEKREKSKEKKYVLRP*MKGNKKGEVKK**E*SDIST  384

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 5

Range 1: 776 to 841 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 20/22(91%) 0/22(0%) Minus/Plus
Query        1  KNMAVKPIFAQEDLISIQKDFR  66
                K MAVK IFAQEDLISIQKDFR
Subject    776  KIMAVKSIFAQEDLISIQKDFR  841

Range 2: 132 to 203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 13/24(54%) 0/24(0%) Minus/Plus
Query      572  SPFLSFHYLFFFVSFLSRTAIQLH  643
                +PF    YL  FVSFLS T   LH
Subject    132  TPFSLPFYLSLFVSFLSGTKYILH  203

Range 3: 332 to 436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 15/35(43%) 0/35(0%) Minus/Plus
Query      197  FSLVFTLSFLRFLC*VFFAPFYPSLSIAFPF*LSF  301
                FSL+F+L  L FL  +FF   Y S    F   +SF
Subject    332  FSLLFSLFSLSFLSFLFFI*LYLSAFFLFVSFISF  436

Range 4: 776 to 838 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 15/21(71%) 0/21(0%) Plus/Minus
Query        4  KIFLNGNQIFLSEDGFDCHIF  66
                KIFLNGNQ+FL +DG +CH F
Subject    776  KIFLNGNQVFLCKDGLNCHDF  838

Range 5: 250 to 384 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 16/45(36%) 0/45(0%) Plus/Minus
Query      521  QESQKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT  655
                +  ++RK    R++ +E K   RP* KGN+K ++ K *E   ++T
Subject    250  KNKKERKDKEKREKSKEKKYVLRP*MKGNKKGEVKK**E*SDIST  384

Nucleotide Sequence (388 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
388

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6

Range 1: 1971 to 2300 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.2 bits(515) 0.0 106/110(96%) 0/110(0%) Plus/Plus
Query        2  IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAV SC
Subject   1971  MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC  2300

Range 2: 1970 to 2299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 96/110(87%) 0/110(0%) Minus/Minus
Query        1  HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM  330
                H+RTALHKL ELETLS+KVM SSGKALVKLSLAPALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSFNTS LAIVDTIPSNRSS* +ALLTLATRLCCPP  A+
Subject   1970  HERTALHKLCELETLSKKVMNSSGKALVKLSLAPALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFNTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI  2299

Range 3: 1971 to 2300 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 73/110(66%) 0/110(0%) Minus/Minus
Query        2  A**DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN  331
                A* + V *TVR RNTI+KSYE FWKSSRQ    P TKR+ H+A ILL Q +LLHHEQFR LLV++RHQ A F Q+ PVG C*YYP E*IFLI+RIT+A H  LLP F R+
Subject   1971  A*TNSVT*TVRARNTIQKSYE*FWKSSRQTFFSPGTKRYRHDALILLPQRILLHHEQFRNLLVEVRHQRAPFFQY*PVGNC*YYPFE*IFLIKRITYACHQALLPPFSRH  2300

Range 4: 1976 to 2299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 68/108(63%) 0/108(0%) Plus/Plus
Query        7  GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQRRPIM  330
                G R ATE  G R+*C  S RSIR DSINN Q A +E R H GDA  RED  TVHDEGG+ GEEE*+R D  A*CRG  + DESFSRT HNF  *CFE +QFM R   M
Subject   1976  G*RGATEPGGKRK*CA*SGRSIRRDSINNCQPASIERREHAGDAPRREDFGTVHDEGGYAGEEE*VRRDGSA*CRG*RKFDESFSRTIHNFFG*CFELAQFM*RCSFM  2299

Range 5: 1975 to 2136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 36/54(67%) 0/54(0%) Plus/Plus
Query        6  R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS  167
                R K GNR  W A*VMR I+KIYS+G*YQQ PTG  *+K A W*R  TRR+ NCS
Subject   1975  RLKGGNRAWWQA*VMRLIRKIYSKG*YQQLPTG*Y*KKGARW*RTSTRRFRNCS  2136

Range 6: 2167 to 2301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 28/45(62%) 0/45(0%) Plus/Plus
Query      198  INAL*PWRLVQGPRRA*RELFQNFS*LFLIVFRVLTVYATPSYHA  332
                I+A *  RLV G ++ *RELFQN+S*LF IVFR  TVY T   HA
Subject   2167  ISAS*R*RLVPGLKKV*RELFQNYS*LFWIVFRARTVYVTLFVHA  2301

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6

Range 1: 2036 to 2365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.2 bits(515) 0.0 106/110(96%) 0/110(0%) Plus/Plus
Query        2  IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAV SC
Subject   2036  MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC  2365

Range 2: 2035 to 2364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.3 bits(468) 0.0 96/110(87%) 0/110(0%) Minus/Minus
Query        1  HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM  330
                H+RTALHKL ELETLS+KVM SSGKALVKLSLAPALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP  AM
Subject   2035  HERTALHKLCELETLSKKVMNSSGKALVKLSLAPALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAM  2364

Range 3: 2036 to 2365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 72/110(65%) 0/110(0%) Minus/Minus
Query        2  A**DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN  331
                A* + V *TVR RNTI+KSYE FWKSSRQ    P TKR+ H+A ILL Q +LLHHEQFR LLV++RHQ A F Q+ PV  C*YYP E*IFLI+RIT+A H  LLP F R+
Subject   2036  A*TNSVT*TVRARNTIQKSYE*FWKSSRQTFFSPGTKRYRHDALILLPQRILLHHEQFRNLLVEVRHQRAPFFQY*PVSNC*YYPFE*IFLIKRITYACHQALLPPFSRH  2365

Range 4: 2035 to 2364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 68/110(62%) 0/110(0%) Plus/Plus
Query        1  HCGKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQRRPIM  330
                H G R ATE  G R+*C  S RSIR DSINN   A  E R H GDA  RED  TVHDEGG+ GEEE*+R D  A*CRG  + DESFSRT HNF  *CFE +QFM R   M
Subject   2035  HGG*RGATEPGGKRK*CA*SGRSIRRDSINNC*PASTERREHAGDAPRREDFGTVHDEGGYAGEEE*VRRDGSA*CRG*RKFDESFSRTIHNFFG*CFELAQFM*RCSFM  2364

Range 5: 2040 to 2201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 35/54(65%) 0/54(0%) Plus/Plus
Query        6  R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS  167
                R K GNR  W A*VMR I+KIYS+G*YQQ  TG  *+K A W*R  TRR+ NCS
Subject   2040  RLKGGNRAWWQA*VMRLIRKIYSKG*YQQLLTG*Y*KKGARW*RTSTRRFRNCS  2201

Range 6: 2232 to 2366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 28/45(62%) 0/45(0%) Plus/Plus
Query      198  INAL*PWRLVQGPRRA*RELFQNFS*LFLIVFRVLTVYATPSYHA  332
                I+A *  RLV G ++ *RELFQN+S*LF IVFR  TVY T   HA
Subject   2232  ISAS*R*RLVPGLKKV*RELFQNYS*LFWIVFRARTVYVTLFVHA  2366

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 1895 to 2224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.1 bits(506) 0.0 105/110(95%) 0/110(0%) Plus/Plus
Query        2  IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSA AKESLTRAFPELFITFLDSVSSSHSLCNAV SC
Subject   1895  MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC  2224

Range 2: 1894 to 2223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 94/110(85%) 0/110(0%) Minus/Minus
Query        1  HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM  330
                H+RTALHKL ELETLS+KV+KSSGKALVKLSLA ALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP  A+
Subject   1894  HERTALHKLCELETLSKKVIKSSGKALVKLSLATALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI  2223

Range 3: 1895 to 2215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 68/107(64%) 0/107(0%) Minus/Minus
Query        2  DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN  322
                + V *TVR RNTI+K Y+KFWKSSRQ      TKR+ H+A ILL QC+LLHHEQ R LLV++RHQ A F Q+ PV  C*YYP E*IFLI+RIT+A H  LLP F R+
Subject   1895  NSVT*TVRARNTIQKGYKKFWKSSRQTFFSHSTKRYRHDALILLPQCILLHHEQLRNLLVEVRHQCAPFFQY*PVSNC*YYPFE*IFLIERITYACHQALLPPFSRH  2215

Range 4: 1900 to 2211 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 63/104(61%) 0/104(0%) Plus/Plus
Query        7  GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQR  318
                G R ATE  G R+*C +S RSIR DSINN   A  E R H GDA  RED   VHDEGG+ GEEE*+R D  A*C G  + DESFSRTF+N   *CFE +QFM R
Subject   1900  G*RGATEPGGKRK*CAQSGRSIRRDSINNC*PASTERREHTGDAPRREDFGAVHDEGGYTGEEE*VRRDGSA*CCG*RKFDESFSRTFYNLFG*CFELAQFM*R  2211

Range 5: 1899 to 2060 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 34/54(63%) 0/54(0%) Plus/Plus
Query        6  R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS  167
                R K GNR  W A*VMR I+KIYS+G*YQQ  TG  *+K A W*R  TRR+ +CS
Subject   1899  RLKGGNRAWWQA*VMRSIRKIYSKG*YQQLLTG*Y*KKGAHW*RTSTRRFRSCS  2060

Range 6: 2091 to 2210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 24/40(60%) 0/40(0%) Plus/Plus
Query      198  INAL*PWRLVQGPRRA*RELFQNFS*LFLIVFRVLTVYAT  317
                I+A *  RLV   ++ *RELFQNF * F IVFR  TVY T
Subject   2091  ISAS*R*RLVLWLKKV*RELFQNFL*PFWIVFRARTVYVT  2210

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6

Range 1: 1895 to 2224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.1 bits(506) 0.0 105/110(95%) 0/110(0%) Plus/Plus
Query        2  IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSA AKESLTRAFPELFITFLDSVSSSHSLCNAV SC
Subject   1895  MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC  2224

Range 2: 1894 to 2223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 94/110(85%) 0/110(0%) Minus/Minus
Query        1  HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM  330
                H+RTALHKL ELETLS+KV+KSSGKALVKLSLA ALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP  A+
Subject   1894  HERTALHKLCELETLSKKVIKSSGKALVKLSLATALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI  2223

Range 3: 1895 to 2215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 68/107(64%) 0/107(0%) Minus/Minus
Query        2  DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN  322
                + V *TVR RNTI+K Y+KFWKSSRQ      TKR+ H+A ILL QC+LLHHEQ R LLV++RHQ A F Q+ PV  C*YYP E*IFLI+RIT+A H  LLP F R+
Subject   1895  NSVT*TVRARNTIQKGYKKFWKSSRQTFFSHSTKRYRHDALILLPQCILLHHEQLRNLLVEVRHQCAPFFQY*PVSNC*YYPFE*IFLIERITYACHQALLPPFSRH  2215

Range 4: 1900 to 2211 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 63/104(61%) 0/104(0%) Plus/Plus
Query        7  GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQR  318
                G R ATE  G R+*C +S RSIR DSINN   A  E R H GDA  RED   VHDEGG+ GEEE*+R D  A*C G  + DESFSRTF+N   *CFE +QFM R
Subject   1900  G*RGATEPGGKRK*CAQSGRSIRRDSINNC*PASTERREHTGDAPRREDFGAVHDEGGYTGEEE*VRRDGSA*CCG*RKFDESFSRTFYNLFG*CFELAQFM*R  2211

Range 5: 1899 to 2060 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 34/54(63%) 0/54(0%) Plus/Plus
Query        6  R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS  167
                R K GNR  W A*VMR I+KIYS+G*YQQ  TG  *+K A W*R  TRR+ +CS
Subject   1899  RLKGGNRAWWQA*VMRSIRKIYSKG*YQQLLTG*Y*KKGAHW*RTSTRRFRSCS  2060

Range 6: 2091 to 2210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 24/40(60%) 0/40(0%) Plus/Plus
Query      198  INAL*PWRLVQGPRRA*RELFQNFS*LFLIVFRVLTVYAT  317
                I+A *  RLV   ++ *RELFQNF * F IVFR  TVY T
Subject   2091  ISAS*R*RLVLWLKKV*RELFQNFL*PFWIVFRARTVYVT  2210

Grapevine leafroll associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: LC052212.1 Length: 17608 Number of Matches: 1

Range 1: 2445 to 2762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.7 bits(239) 0.0 46/106(43%) 0/106(0%) Plus/Plus
Query       14  GGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                GG  S +AS+S AL  ED+F+G+VS++AN++ LKEGS ++  LD  ++ +   K + L  K    +  +L+   K  LT+ FPEL + F DSV SSH +CNAV  C
Subject   2445  GGSNSFMASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPSVTINPSLTTTEKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMC  2762

Nucleotide Sequence (345 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
345

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate CN308 1 RNA dependent RNA polymerase gene, partial cds

Sequence ID: GU812894.1 Length: 998 Number of Matches: 6

Range 1: 297 to 611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.5 bits(501) 0.0 98/105(93%) 0/105(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS  315
                RSSMAKQSLWARLRSFVY LSAMTRYKLMVK+DAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQ++VLAYHGMST+DFSREV ERLGD+S
Subject    297  RSSMAKQSLWARLRSFVYGLSAMTRYKLMVKSDAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQAKVLAYHGMSTEDFSREVGERLGDVS  611

Range 2: 299 to 610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.3 bits(468) 0.0 89/104(86%) 0/104(0%) Minus/Minus
Query        3  EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED  314
                + SPSLS TSRLKSSVDIPWYAKT  CSTYFNLSTACVKMCENIAVIALSWYT+FCPVTYCC GVESNFGLAS  T+SL*RVIAD+  T +RKRAHNDCLAIED
Subject    299  DTSPSLSPTSRLKSSVDIPWYAKTFACSTYFNLSTACVKMCENIAVIALSWYTMFCPVTYCCKGVESNFGLASDLTISL*RVIADRP*TKDRKRAHNDCLAIED  610

Range 3: 297 to 605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 63/103(61%) 0/103(0%) Minus/Minus
Query        1  VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP  309
                +PQS +NL+T+V   HT+V *D RLQHIFQPLD L +DV*KHR YS VVVHN+L   VLL R  IQLR  + L H+L+T H  Q + +R Q SPQ LLSHRRP
Subject    297  IPQSFTNLATEVFC*HTVVC*DFRLQHIFQPLDSLRKDV*KHRSYSSVVVHNVLPCNVLL*RRGIQLRFGV*LNHKLITSHCRQTVDKRPQTSPQRLLSHRRP  605

Range 4: 298 to 603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 58/102(57%) 0/102(0%) Plus/Plus
Query        2  GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG  307
                GLLWLSS CGL C     +C++* V S W  Q  +RSWI    SST   + LCTTT L* RCFHTS  + SRG*NMCC R+S* T VC   T V RL +DWG
Subject    298  GLLWLSSRCGLVCGLLSTVCRQ*LVISLWLSQTPNRSWIPRLYSSTLQGKTLCTTTEL*LRCFHTSLRKLSRG*NMCCKRKS*HTTVCQQKTSVARLVKDWG  603

Range 5: 299 to 622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.5 bits(261) 0.0 61/108(56%) 0/108(0%) Plus/Plus
Query        3  VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGGHLSPKH  326
                VFYG*AV+VGS A+  +  V +D+L A+G  R   EVGF+   AVR R ++CVPRQ YN DVFTHL+   REVEICAA ESLS+P YV   L SRG  +TGG +   H
Subject    299  VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGFHAFTAVRYRAKHCVPRQSYNCDVFTHLYASCREVEICAASESLSIPRYVNRRLQSRGW*KTGGCVGLLH  622

Range 6: 298 to 603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 61/102(60%) 0/102(0%) Minus/Minus
Query        2  PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT  307
                PPV   P D*S   TY G LRLS+AAHISTSR   *RCVKTS L* CRGTQ     RTA    NPTS   L  P*A N S  T+  + +A+EPT TA*P*KT
Subject    298  PPVFHQPRD*SLLLTYRGMLRLSLAAHISTSRQLA*RCVKTSQL*LCRGTQCFAL*RTAVKAWNPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT  603

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6

Range 1: 7945 to 8259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 99/105(94%) 0/105(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS  315
                RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVL S+VLAYHGMST+DFSREV ERLGD+S
Subject   7945  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLHSKVLAYHGMSTEDFSREVGERLGDVS  8259

Range 2: 7947 to 8258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.5 bits(477) 0.0 90/104(87%) 0/104(0%) Minus/Minus
Query        3  EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED  314
                + SPSLS TSRLKSSVDIPWYAKT +CSTYFNLSTACVKMCENIAVIALSWYT+FCPVTYCC GVESNFGLAS  T+SL*RVIAD+S T +RKRAHNDCLAIED
Subject   7947  DTSPSLSPTSRLKSSVDIPWYAKTFECSTYFNLSTACVKMCENIAVIALSWYTMFCPVTYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED  8258

Range 3: 7945 to 8253 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 64/103(62%) 0/103(0%) Minus/Minus
Query        1  VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP  309
                +PQS SNL+T+V   HT+V *D R+QHIFQPLDRL +DV*KHR YS VVV+N+L   VLL R  IQLR  + L H+L+T H  QI+ +R Q SPQ LLSHRRP
Subject   7945  IPQSFSNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRCYSSVVVYNVLPCNVLL*RRGIQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP  8253

Range 4: 7947 to 8252 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 62/102(61%) 0/102(0%) Plus/Plus
Query        3  VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG  308
                VFYG*AV+VGS A+  +  V +D+L A+G  R   EVGF+   AVR R E+C+PRQ YN DVFTHL+  GREVEICAA ESLS+P YV   L SRG R+TGG
Subject   7947  VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGFHAFTAVRYRAEHCIPRQSYNSDVFTHLYASGREVEICAAFESLSIPRYVNRRLQSRGWRKTGG  8252

Range 5: 7946 to 8251 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 61/102(60%) 0/102(0%) Plus/Plus
Query        2  GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG  307
                GLLWLSS CGL C     IC++* V S W  Q  +RSWI    SST   R L TTT L*+RCFHTS  +RSRG*NMCC R+S* T VC   T V RLE+DWG
Subject   7946  GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWIPRLYSSTLQGRTLYTTTEL*QRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLEKDWG  8251

Range 6: 7946 to 8251 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 63/102(62%) 0/102(0%) Minus/Minus
Query        2  PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT  307
                PPV L P D*S   TY G LRLS AAHISTSRP  *RCVKTS L* CRG Q S   RTA    NPTS   L  P*A N S  T+  + +A+EPT TA*P*KT
Subject   7946  PPVFLQPRD*SLLLTYRGMLRLSNAAHISTSRPLA*RCVKTSLL*LCRGIQCSAL*RTAVKAWNPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT  8251

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6

Range 1: 8010 to 8324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 99/105(94%) 0/105(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS  315
                RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVL S+VLAYHGMST+DFSREV ERLGD+S
Subject   8010  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLHSKVLAYHGMSTEDFSREVGERLGDVS  8324

Range 2: 8012 to 8323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.1 bits(474) 0.0 89/104(86%) 0/104(0%) Minus/Minus
Query        3  EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED  314
                + SPSLS TSRLKSSVDIPWYAKT +CSTYFNLSTACVKMCENIAVIALSWYT+FCPVTYCC GVESNFGLAS  T+SL*RVIAD+S T +R+RAHNDCLAIED
Subject   8012  DTSPSLSPTSRLKSSVDIPWYAKTFECSTYFNLSTACVKMCENIAVIALSWYTMFCPVTYCCKGVESNFGLASDLTISL*RVIADRS*TKDRRRAHNDCLAIED  8323

Range 3: 8010 to 8318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 64/103(62%) 0/103(0%) Minus/Minus
Query        1  VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP  309
                +PQS +NL+T+V   HT+V *D R+QHIFQPLDRL +DV*KHR YS VVVHN+L   VLL R  IQLR  + L H+L+T H  QI+ +R Q SPQ LLSHRRP
Subject   8010  IPQSFANLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRGYSSVVVHNVLPCNVLL*RRGIQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP  8318

Range 4: 8011 to 8316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 60/102(59%) 0/102(0%) Plus/Plus
Query        2  GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG  307
                GLLWLSS CGL C     IC++* V S W  Q  +RSWI    SST   + LCTTT L* RCFHTS  +RSRG*NMCC R+S* T VC   T V RL +DWG
Subject   8011  GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWIPRLYSSTLQGKTLCTTTEL*PRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLAKDWG  8316

Range 5: 8012 to 8317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 62/102(61%) 0/102(0%) Plus/Plus
Query        3  VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG  308
                VFYG*AV+VGS A+  +  V +D+L A+G  R   EVGF+   AVR R ++CVPRQ YN DVFTHL+  GREVEICAA ESLS+P YV   L SRG R+TGG
Subject   8012  VFYG*AVVVGSSAVFCLRSVGNDSL*AYG*VRRQTEVGFHAFTAVRYRAKHCVPRQSYNRDVFTHLYASGREVEICAAFESLSIPRYVNRRLQSRGWRKTGG  8317

Range 6: 8011 to 8316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 62/102(61%) 0/102(0%) Minus/Minus
Query        2  PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT  307
                PPV   P D*S   TY G LRLS AAHISTSRP  *RCVKTS L* CRGTQ     RTA    NPTS   L  P*A N S  T+  + +A EPT TA*P*KT
Subject   8011  PPVFRQPRD*SLLLTYRGMLRLSNAAHISTSRPLA*RCVKTSRL*LCRGTQCFAL*RTAVKAWNPTSVWRLT*P*AYNESLPTDRRQKTADEPTTTA*P*KT  8316

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 7869 to 8183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.5 bits(499) 0.0 96/105(91%) 0/105(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS  315
                RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQY+TGQNIVYHDRAITAMFSHIFTQAVERLKYVL ++VLAYHGMST+DFSREV +RLGD+S
Subject   7869  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVS  8183

Range 2: 7871 to 8182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 89/104(86%) 0/104(0%) Minus/Minus
Query        3  EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED  314
                + SPSLS TSRLKSSVDIPWYAKT  CSTYFNLSTACVKMCENIAVIALSWYT+FCPV YCC GVESNFGLAS  T+SL*RVIAD+S T +RKRAHNDCLAIED
Subject   7871  DTSPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED  8182

Range 3: 7869 to 8177 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 61/103(59%) 0/103(0%) Minus/Minus
Query        1  VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP  309
                +PQS++NL+T+V   HT+V *D R+QHIFQPLDRL +DV*KHR YS ++VHN+L   VLL R  +QLR  + L H+L+T H  QI+ +R Q SPQ LLSHRRP
Subject   7869  IPQSITNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP  8177

Range 4: 7870 to 8175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.5 bits(261) 0.0 57/102(56%) 0/102(0%) Plus/Plus
Query        2  GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG  307
                GLLWLSS CGL C     IC++* V S W  Q  +RSW     SST   + LCT   L* RCFHTS  +RSRG*NMCC R+S* T VC   T V RL  DWG
Subject   7870  GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWTPRLYSSTLQGKTLCTMIEL*LRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLVIDWG  8175

Range 5: 7871 to 8176 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 57/102(56%) 0/102(0%) Plus/Plus
Query        3  VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG  308
                VFYG*AV+VGS A+  +  V +D+L A+G  R   EVG +   AV  R ++CVP   YN DVFTHL+  GREVEICAA ESLS+P YV   L SRG   TGG
Subject   7871  VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPRYVNRRLQSRGW**TGG  8176

Range 6: 7870 to 8175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 58/102(57%) 0/102(0%) Minus/Minus
Query        2  PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT  307
                PPV   P D*S   TY G LRLS AAHISTSRP  *RCVKTS L*   GTQ      TA    +PTS   L  P*A N S  T+  + +A+EPT TA*P*KT
Subject   7870  PPVYHQPRD*SLLLTYRGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT  8175

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6

Range 1: 7869 to 8183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.5 bits(499) 0.0 96/105(91%) 0/105(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS  315
                RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQY+TGQNIVYHDRAITAMFSHIFTQAVERLKYVL ++VLAYHGMST+DFSREV +RLGD+S
Subject   7869  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVS  8183

Range 2: 7871 to 8182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 89/104(86%) 0/104(0%) Minus/Minus
Query        3  EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED  314
                + SPSLS TSRLKSSVDIPWYAKT  CSTYFNLSTACVKMCENIAVIALSWYT+FCPV YCC GVESNFGLAS  T+SL*RVIAD+S T +RKRAHNDCLAIED
Subject   7871  DTSPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED  8182

Range 3: 7869 to 8177 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 61/103(59%) 0/103(0%) Minus/Minus
Query        1  VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP  309
                +PQS++NL+T+V   HT+V *D R+QHIFQPLDRL +DV*KHR YS ++VHN+L   VLL R  +QLR  + L H+L+T H  QI+ +R Q SPQ LLSHRRP
Subject   7869  IPQSITNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP  8177

Range 4: 7870 to 8175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.5 bits(261) 0.0 57/102(56%) 0/102(0%) Plus/Plus
Query        2  GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG  307
                GLLWLSS CGL C     IC++* V S W  Q  +RSW     SST   + LCT   L* RCFHTS  +RSRG*NMCC R+S* T VC   T V RL  DWG
Subject   7870  GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWTPRLYSSTLQGKTLCTMIEL*LRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLVIDWG  8175

Range 5: 7871 to 8176 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 57/102(56%) 0/102(0%) Plus/Plus
Query        3  VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG  308
                VFYG*AV+VGS A+  +  V +D+L A+G  R   EVG +   AV  R ++CVP   YN DVFTHL+  GREVEICAA ESLS+P YV   L SRG   TGG
Subject   7871  VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPRYVNRRLQSRGW**TGG  8176

Range 6: 7870 to 8175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 58/102(57%) 0/102(0%) Minus/Minus
Query        2  PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT  307
                PPV   P D*S   TY G LRLS AAHISTSRP  *RCVKTS L*   GTQ      TA    +PTS   L  P*A N S  T+  + +A+EPT TA*P*KT
Subject   7870  PPVYHQPRD*SLLLTYRGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT  8175

Nucleotide Sequence (430 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
430

Descriptions

Alignments

Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds

Sequence ID: EF103901.1 Length: 5715 Number of Matches: 7

Range 1: 2045 to 2446 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.0 bits(572) 0.0 127/134(95%) 0/134(0%) Minus/Plus
Query        2  VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL  403
                V  F  GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK ELLINDRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL
Subject   2045  VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELLINDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL  2446

Range 2: 2026 to 2229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 53/68(78%) 0/68(0%) Plus/Minus
Query      219  QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP  422
                QTTT DGSEPFK+IAN VI T VFPNHVFAPPDLRCAPTD+TSSFFPIVTTESYSP  K +T ++ +P
Subject   2026  QTTTNDGSEPFKEIANKVIRTKVFPNHVFAPPDLRCAPTDRTSSFFPIVTTESYSPQKKASTTDSDTP  2229

Range 3: 2314 to 2445 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 37/44(84%) 0/44(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN  134
                +SS GSLSRL+FKNNLNGSG+K*Q SGVLTKYFEQK*G HWH N
Subject   2314  KSSFGSLSRLSFKNNLNGSGKK*QWSGVLTKYFEQK*GAHWHVN  2445

Range 4: 2083 to 2442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 75/120(62%) 0/120(0%) Minus/Plus
Query        6  YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R  365
                ++G+E A  VG GAAEIWR +++VREH G+ D VGD+FERFGT++   LWR*LFDFF+ RAA  *QDS*REFW R Q+ +PV PL LFE+FGED G LLF    + VV E KPGKR +*R
Subject   2083  HDGEERACSVGRGAAEIWRRKYVVREHFGSYDFVGDLFERFGTVIGCCLWR*LFDFFEERAAD**QDS*REFWVRPQVNVPVCPLFLFEIFGEDTGPLLFFTGPVQVVFEAKPGKRAE*R  2442

Range 5: 2085 to 2447 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 79/121(65%) 0/121(0%) Minus/Plus
Query        1  QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC  363
                +W R S FCR GRSGDLE +  G*GT W  * CWR L*KVRN     FVAMTL*FF+R SC  MTGFLKRVL S S+  AS PL FVR+IW*G R  VIF +   SC *S*AWKE+ MKIC
Subject   2085  RWGRTSLFCR*GRSGDLEAQIRG*GTLWFL*LCWRSL*KVRNRHWLLFVAMTL*FFRRTSC*LMTGFLKRVLGSTSS*RASVPLIFVRNIW*GHRTIVIFYRTRSSCF*S*AWKESRMKIC  2447

Range 6: 2067 to 2447 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 78/127(61%) 0/127(0%) Plus/Minus
Query        1  ADLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT  381
                A+LH  LFPGL S+TT*    +NN+ P SSPN SNK+KG TG   * R QNSLQESCH* AA   KKSKSHRHK +   VPNLSK SPT S  P CSLT    LQISAAP PT++A S P * ++ T
Subject   2067  ANLHSALFPGLASKTT*TGPVKNNNGPVSSPNISNKNKGHTGTLT*GRTQNSLQESCH*SAARSSKKSKSHRHKQQPMTVPNLSKRSPTKS*EPKCSLTTYLRLQISAAPLPTEQARSSPS*PRNHT  2447

Range 7: 2066 to 2446 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 80/127(63%) 0/127(0%) Plus/Minus
Query        2  QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL  382
                QIFI  SFQA*LQ+QL+ +  KIT++R PHQI RTK+RG LA   E+E KTLFKNPVI++QL L KNQRVIATN++   FRTFQR RQQ H +Q VP*P +  SRSPLRP+RQN+L+L H ++ ++L
Subject   2066  QIFIRLSFQA*LQKQLERVR*KITMVRCPHQIFRTKIRGTLAR*LEVEPKTLFKNPVINQQLVLRKNQRVIATNNNQ*RFRTFQRDRQQSHKNQSVP*PRICASRSPLRPYRQNKLVLPHRDHGIIL  2446

UNVERIFIED: Grapevine leafroll associated virus 1 isolate 7_2_5 genomic sequence

Sequence ID: KT000365.1 Length: 3046 Number of Matches: 7

Range 1: 2249 to 2650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.0 bits(572) 0.0 127/134(95%) 0/134(0%) Minus/Plus
Query        2  VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL  403
                V  F  GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK ELLINDRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL
Subject   2249  VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELLINDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL  2650

Range 2: 2230 to 2433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 55/68(81%) 0/68(0%) Plus/Minus
Query      219  QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP  422
                QTTT DGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP  K +T ++ +P
Subject   2230  QTTTNDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP  2433

Range 3: 2518 to 2649 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 38/44(86%) 0/44(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN  134
                +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N
Subject   2518  KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN  2649

Range 4: 2272 to 2646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 79/125(63%) 0/125(0%) Minus/Plus
Query        6  VRLCSYNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R  380
                VR   ++G+E ARFVG  AAEIWR +++VREH G+ D VGDIFERFGT++   LW *LFDFF+ RAA +*QDS*REFW R Q+ +PV PL LFE+FGED GSLLF    + VV E K GKR Q*R
Subject   2272  VRFRGHDGEERARFVGRSAAEIWRRKYVVREHFGSYDFVGDIFERFGTVIGCCLW**LFDFFEERAADK*QDS*REFWVRPQVNVPVRPLFLFEIFGEDTGSLLFFTGPVQVVFEAKLGKRAQ*R  2646

Range 5: 2289 to 2651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 83/121(69%) 0/121(0%) Minus/Plus
Query        1  QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC  363
                +W R SSFCR  RSGDLE +  G*GT W  * CWRYL*KVRN     FV MTL*FF+R SC  MTGFLKRVL S S+  ASAPL FVR+IW*G RITVIF +   SC *S*AWKE+PMKIC
Subject   2289  RWGRTSSFCR*ERSGDLEAQIRG*GTLWFL*LCWRYL*KVRNRHWLLFVVMTL*FFRRTSC**MTGFLKRVLGSTSS*RASAPLIFVRNIW*GHRITVIFYRTRSSCF*S*AWKESPMKIC  2651

Range 6: 2271 to 2648 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 80/126(63%) 0/126(0%) Plus/Minus
Query        4  DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT  381
                +LHW LFP L S+TT*    +NNSDP SSPN SNK+KG TG   * R QNSLQESCH  AA   KKSKSH HK +   VPNLSKISPT S  P CSLT    LQISAA  PTKRA S P * ++RT
Subject   2271  NLHWALFPSLASKTT*TGPVKNNSDPVSSPNISNKNKGRTGTLT*GRTQNSLQESCHLSAARSSKKSKSHHHKQQPMTVPNLSKISPTKS*EPKCSLTTYLRLQISAALLPTKRARSSPS*PRNRT  2648

Range 7: 2270 to 2650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 85/127(67%) 0/127(0%) Plus/Minus
Query        2  QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL  382
                QIFIG SFQA*LQ+QL+ +  KITVIR PHQI RTK+RGALA   E+E KTLFKNPVI +QL L KNQRVI TN++   FRTFQRYRQQ H +Q VP*P +  SRSPLR +RQNEL+L H ++ +VL
Subject   2270  QIFIGLSFQA*LQKQLERVR*KITVIRCPHQIFRTKIRGALAR*LEVEPKTLFKNPVIYQQLVLRKNQRVITTNNNQ*RFRTFQRYRQQSHKNQSVP*PRICASRSPLRSYRQNELVLPHRDHGIVL  2650

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 7

Range 1: 4510 to 4911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.2 bits(566) 0.0 126/134(94%) 0/134(0%) Minus/Plus
Query        2  VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL  403
                V  F  GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLK SEPSLVVVCGDDSLIFSK ELLINDRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL
Subject   4510  VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKSSEPSLVVVCGDDSLIFSKNELLINDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL  4911

Range 2: 4491 to 4694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 55/68(81%) 0/68(0%) Plus/Minus
Query      219  QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP  422
                QTTT DGSE FKDIANNVI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP  K +T ++ +P
Subject   4491  QTTTNDGSELFKDIANNVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP  4694

Range 3: 4779 to 4910 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 38/44(86%) 0/44(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN  134
                +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N
Subject   4779  KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN  4910

Range 4: 4548 to 4907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.2 bits(387) 0.0 78/120(65%) 0/120(0%) Minus/Plus
Query        6  YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R  365
                ++G+E ARFV  GAAEIWR E++VREH G+ D+VGDIFE+FGT++   LWR*LFDFF+ RAA +*QDS*REFW R Q+ +PV PL LFE+FGED GSLLF    + VV E K GKR Q*R
Subject   4548  HDGEERARFVSRGAAEIWRREYVVREHFGSYDIVGDIFEKFGTVIGCCLWR*LFDFFEERAADK*QDS*REFWVRPQVNVPVCPLFLFEIFGEDTGSLLFFTGPVQVVFEAKLGKRAQ*R  4907

Range 5: 4550 to 4912 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 83/121(69%) 0/121(0%) Minus/Plus
Query        1  QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC  363
                +W R SSFC+ GRSGDLE R  G*GT W  * CWRYL*KVRN     FVAMTL*FF+R SC  MTGFLKRVL S S+  AS PL FVR+IW*G RI VIF +   SC *S*AWKE+PMKIC
Subject   4550  RWGRTSSFCQ*GRSGDLEARIRG*GTLWFL*HCWRYL*KVRNRHWLLFVAMTL*FFRRTSC**MTGFLKRVLGSTSS*RASVPLIFVRNIW*GHRIIVIFYRTRSSCF*S*AWKESPMKIC  4912

Range 6: 4532 to 4909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 79/126(63%) 0/126(0%) Plus/Minus
Query        4  DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT  381
                +LHW LFP L S+TT*    +NN+DP SSPN SNK+KG TG   * R QNSLQESCH  AA   KKSKSHRHK +   VPN SKISPT S  P CSLT  S LQISAAP  TKRA S P * ++ T
Subject   4532  NLHWALFPSLASKTT*TGPVKNNNDPVSSPNISNKNKGHTGTLT*GRTQNSLQESCHLSAARSSKKSKSHRHKQQPMTVPNFSKISPTMS*EPKCSLTTYSRLQISAAPLLTKRARSSPS*PRNHT  4909

Range 7: 4531 to 4911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 84/127(66%) 0/127(0%) Plus/Minus
Query        2  QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL  382
                QIFIG SFQA*LQ+QL+ +  KIT+IR PHQI RTK+RG LA   E+E KTLFKNPVI +QL L KNQRVIATN++   FRTFQRYRQQ H +Q VP*P +R SRSPLRP+ QNEL+L H ++ ++L
Subject   4531  QIFIGLSFQA*LQKQLERVR*KITMIRCPHQIFRTKIRGTLAR*LEVEPKTLFKNPVIYQQLVLRKNQRVIATNNNQ*RFRTFQRYRQQCHKNQSVP*PRIRASRSPLRPY*QNELVLPHRDHGIIL  4911

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7

Range 1: 8295 to 8696 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 125/134(93%) 0/134(0%) Minus/Plus
Query        2  VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL  403
                V  F  GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK EL I+DRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL
Subject   8295  VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL  8696

Range 2: 8276 to 8479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 56/68(82%) 0/68(0%) Plus/Minus
Query      219  QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP  422
                QTTTKDGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP  K +T ++ +P
Subject   8276  QTTTKDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP  8479

Range 3: 8564 to 8695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 38/44(86%) 0/44(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN  134
                +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N
Subject   8564  KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN  8695

Range 4: 8333 to 8692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 79/120(66%) 0/120(0%) Minus/Plus
Query        6  YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R  365
                ++G+E ARFVG GAAEIWRC+++VREH G+ D VGDIFERFGT+    LWR*LFDFF+ RAA +* DS*REFW R Q+ +PV  L LFE+FGED GSLLF    +*VV E K GKR Q*R
Subject   8333  HDGEERARFVGRGAAEIWRCKYVVREHFGSYDFVGDIFERFGTVFGCCLWR*LFDFFEERAADR**DS*REFWVRPQVNVPVCSLFLFEIFGEDTGSLLFFT*PV*VVFEAKLGKRAQ*R  8692

Range 5: 8335 to 8697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 83/121(69%) 0/121(0%) Minus/Plus
Query        1  QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC  363
                +W R SSFCR GRSGDLEV+  G*GT W  * CWRYL*KVRN     FVAMTL*FF+R SC  M GFLKRVL S S+  AS  L FVR+IW*G RI VIF    LSC *S*AWKE+PMKIC
Subject   8335  RWGRTSSFCR*GRSGDLEVQIRG*GTLWFL*LCWRYL*KVRNRLWLLFVAMTL*FFRRTSCR*MIGFLKRVLGSTSS*RASVLLIFVRNIW*GHRIIVIFYLTRLSCF*S*AWKESPMKIC  8697

Range 6: 8317 to 8694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 79/126(63%) 0/126(0%) Plus/Minus
Query        4  DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT  381
                +LHW LFP L S+TT*    +NN+DP SSPN SNK+K  TG   * R QNSLQES H  AA   KKSKSHRHK + + VPNLSKISPT S  P CSLT   HLQISAAP PTKRA S P * ++ T
Subject   8317  NLHWALFPSLASKTT*TGQVKNNNDPVSSPNISNKNKEHTGTLT*GRTQNSLQESYHLSAARSSKKSKSHRHKQQPKTVPNLSKISPTKS*EPKCSLTTYLHLQISAAPLPTKRARSSPS*PRNHT  8694

Range 7: 8316 to 8696 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 84/127(66%) 0/127(0%) Plus/Minus
Query        2  QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL  382
                QIFIG SFQA*LQ+QLK +  KIT+IR PHQI RTK+R  LA   E+E KTLFKNP+I  QL L KNQRVIATN++   FRTFQRYRQQ H +Q VP*P + TSRSPLRP+RQNEL+L H ++ ++L
Subject   8316  QIFIGLSFQA*LQKQLKRVR*KITMIRCPHQIFRTKIRSTLAR*LEVEPKTLFKNPIIYLQLVLRKNQRVIATNNNQRRFRTFQRYRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIIL  8696

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7

Range 1: 8295 to 8696 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 125/134(93%) 0/134(0%) Minus/Plus
Query        2  VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL  403
                V  F  GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK EL I+DRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL
Subject   8295  VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL  8696

Range 2: 8276 to 8479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 56/68(82%) 0/68(0%) Plus/Minus
Query      219  QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP  422
                QTTTKDGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP  K +T ++ +P
Subject   8276  QTTTKDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP  8479

Range 3: 8564 to 8695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 38/44(86%) 0/44(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN  134
                +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N
Subject   8564  KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN  8695

Range 4: 8333 to 8692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 79/120(66%) 0/120(0%) Minus/Plus
Query        6  YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R  365
                ++G+E ARFVG GAAEIWRC+++VREH G+ D VGDIFERFGT+    LWR*LFDFF+ RAA +* DS*REFW R Q+ +PV  L LFE+FGED GSLLF    +*VV E K GKR Q*R
Subject   8333  HDGEERARFVGRGAAEIWRCKYVVREHFGSYDFVGDIFERFGTVFGCCLWR*LFDFFEERAADR**DS*REFWVRPQVNVPVCSLFLFEIFGEDTGSLLFFT*PV*VVFEAKLGKRAQ*R  8692

Range 5: 8335 to 8697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 83/121(69%) 0/121(0%) Minus/Plus
Query        1  QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC  363
                +W R SSFCR GRSGDLEV+  G*GT W  * CWRYL*KVRN     FVAMTL*FF+R SC  M GFLKRVL S S+  AS  L FVR+IW*G RI VIF    LSC *S*AWKE+PMKIC
Subject   8335  RWGRTSSFCR*GRSGDLEVQIRG*GTLWFL*LCWRYL*KVRNRLWLLFVAMTL*FFRRTSCR*MIGFLKRVLGSTSS*RASVLLIFVRNIW*GHRIIVIFYLTRLSCF*S*AWKESPMKIC  8697

Range 6: 8317 to 8694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 79/126(63%) 0/126(0%) Plus/Minus
Query        4  DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT  381
                +LHW LFP L S+TT*    +NN+DP SSPN SNK+K  TG   * R QNSLQES H  AA   KKSKSHRHK + + VPNLSKISPT S  P CSLT   HLQISAAP PTKRA S P * ++ T
Subject   8317  NLHWALFPSLASKTT*TGQVKNNNDPVSSPNISNKNKEHTGTLT*GRTQNSLQESYHLSAARSSKKSKSHRHKQQPKTVPNLSKISPTKS*EPKCSLTTYLHLQISAAPLPTKRARSSPS*PRNHT  8694

Range 7: 8316 to 8696 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 84/127(66%) 0/127(0%) Plus/Minus
Query        2  QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL  382
                QIFIG SFQA*LQ+QLK +  KIT+IR PHQI RTK+R  LA   E+E KTLFKNP+I  QL L KNQRVIATN++   FRTFQRYRQQ H +Q VP*P + TSRSPLRP+RQNEL+L H ++ ++L
Subject   8316  QIFIGLSFQA*LQKQLKRVR*KITMIRCPHQIFRTKIRSTLAR*LEVEPKTLFKNPIIYLQLVLRKNQRVIATNNNQRRFRTFQRYRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIIL  8696

Nucleotide Sequence (489 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
489

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
376.8 1729.7 29% 1.035e-102 72% JQ023131.1
376.8 1729.7 29% 1.035e-102 72% NC_016509.1
376.8 1792.0 29% 1.035e-102 75% KU674796.1
375.0 1730.2 29% 3.687e-102 72% KU674797.1
367.6 1710.5 31% 5.937e-100 72% KT000364.1

Alignments

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 5897 to 6382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
376.8 bits(816) 0.0 157/162(97%) 0/162(0%) Plus/Plus
Query        2  VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH
Subject   5897  VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH  6382

Range 2: 5896 to 6375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.0 bits(740) 0.0 147/160(92%) 0/160(0%) Minus/Minus
Query        1  TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT  480
                TSRSSQTSTASCL++TA +F PGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTR PGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIV FD LCRT
Subject   5896  TSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRT  6375

Range 3: 5897 to 6382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 117/162(72%) 0/162(0%) Minus/Minus
Query        2  MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN  487
                M++**II +*H +L R+Y L I PWH+S CG+QKD+ +++DS PVFR I    EIRV+H+*  +ILVNC+RKLVSYS VRFSN+ISR LQLDEQIETSPC*IH++LN RG STRGLQIFAVYDIIEGLYPQDWV T +PTVL++TPHLHSCADS L* ALPN
Subject   5897  MKH**IITN*HGILPRQYCLEISPWHESACGYQKDVFQIEDSRPVFRRICNHFEIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPN  6382

Range 4: 5898 to 6383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.7 bits(543) 0.0 116/162(72%) 0/162(0%) Plus/Plus
Query        3  FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM  488
                FGKA Q LLSAQLWRWGV  RTVG  V+TQSWGYNPSMMSYTAKI*RPRVL+PR+LS  CI*HGDVSICSSS*S REI LLKRT+E*DTSFR QFTRI   Y C TRIS+  +M RKTG+LS   + SFW PQ L CQG I + Y R K  C*  MIY*  M
Subject   5898  FGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTTRISKWLQMRRKTGRLSSIWNTSFWYPQALSCQGEISRQYCRGKMPC*FVMIY*CFM  6383

Range 5: 5898 to 6383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.4 bits(538) 0.0 116/162(72%) 0/162(0%) Minus/Minus
Query        3  HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE  488
                H  LVDH +LA  L S +   + +LA+K LW PKR    +R* SRLP H  P *NSR T V   DSRKL+AETCVLL CPF*Q+DLA ASA**TNRNIAVLNT**TQ PG QYPR SDLCSIRHH*RIVSPRLG H  PNCP +YTPSPQLCR**+LTRFAE
Subject   5898  HETLVDHHKLARHLASTILPRDFALARKCLWIPKRRIPNRR*SSRLPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQDLALASA**TNRNIAVLNT**TQSPGLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAE  6383

Range 6: 5899 to 6312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 105/138(76%) 0/138(0%) Plus/Plus
Query        4  SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAR  417
                SAKRVK YYRHSCGDGVY  GQLG+ * PSLGDTILQ*CRILQRSE RGY* PG+*V++VFSTAMFRFVHQAEA ARS C*NGQ+SRTQVSA SLRES   T V REFQ G +C GRRD+YL   + LFG+HR+F AR
Subject   5899  SAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKCAGRRDDYLRFGIRLFGIHRHFRAR  6312

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6

Range 1: 5897 to 6382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
376.8 bits(816) 0.0 157/162(97%) 0/162(0%) Plus/Plus
Query        2  VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH
Subject   5897  VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH  6382

Range 2: 5896 to 6375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.0 bits(740) 0.0 147/160(92%) 0/160(0%) Minus/Minus
Query        1  TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT  480
                TSRSSQTSTASCL++TA +F PGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTR PGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIV FD LCRT
Subject   5896  TSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRT  6375

Range 3: 5897 to 6382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 117/162(72%) 0/162(0%) Minus/Minus
Query        2  MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN  487
                M++**II +*H +L R+Y L I PWH+S CG+QKD+ +++DS PVFR I    EIRV+H+*  +ILVNC+RKLVSYS VRFSN+ISR LQLDEQIETSPC*IH++LN RG STRGLQIFAVYDIIEGLYPQDWV T +PTVL++TPHLHSCADS L* ALPN
Subject   5897  MKH**IITN*HGILPRQYCLEISPWHESACGYQKDVFQIEDSRPVFRRICNHFEIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPN  6382

Range 4: 5898 to 6383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.7 bits(543) 0.0 116/162(72%) 0/162(0%) Plus/Plus
Query        3  FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM  488
                FGKA Q LLSAQLWRWGV  RTVG  V+TQSWGYNPSMMSYTAKI*RPRVL+PR+LS  CI*HGDVSICSSS*S REI LLKRT+E*DTSFR QFTRI   Y C TRIS+  +M RKTG+LS   + SFW PQ L CQG I + Y R K  C*  MIY*  M
Subject   5898  FGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTTRISKWLQMRRKTGRLSSIWNTSFWYPQALSCQGEISRQYCRGKMPC*FVMIY*CFM  6383

Range 5: 5898 to 6383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.4 bits(538) 0.0 116/162(72%) 0/162(0%) Minus/Minus
Query        3  HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE  488
                H  LVDH +LA  L S +   + +LA+K LW PKR    +R* SRLP H  P *NSR T V   DSRKL+AETCVLL CPF*Q+DLA ASA**TNRNIAVLNT**TQ PG QYPR SDLCSIRHH*RIVSPRLG H  PNCP +YTPSPQLCR**+LTRFAE
Subject   5898  HETLVDHHKLARHLASTILPRDFALARKCLWIPKRRIPNRR*SSRLPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQDLALASA**TNRNIAVLNT**TQSPGLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAE  6383

Range 6: 5899 to 6312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 105/138(76%) 0/138(0%) Plus/Plus
Query        4  SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAR  417
                SAKRVK YYRHSCGDGVY  GQLG+ * PSLGDTILQ*CRILQRSE RGY* PG+*V++VFSTAMFRFVHQAEA ARS C*NGQ+SRTQVSA SLRES   T V REFQ G +C GRRD+YL   + LFG+HR+F AR
Subject   5899  SAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKCAGRRDDYLRFGIRLFGIHRHFRAR  6312

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6

Range 1: 5973 to 6458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
376.8 bits(816) 0.0 157/162(97%) 0/162(0%) Plus/Plus
Query        2  VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH
Subject   5973  VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH  6458

Range 2: 5972 to 6451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.9 bits(753) 0.0 149/160(93%) 0/160(0%) Minus/Minus
Query        1  TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT  480
                TSRSSQTSTASCL++TA +FLPGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYM+NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVP+V FD LCRT
Subject   5972  TSRSSQTSTASCLDNTASRFLPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDALCRT  6451

Range 3: 5973 to 6458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.9 bits(633) 0.0 123/162(76%) 0/162(0%) Minus/Minus
Query        2  MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN  487
                M++**II +*H +L R++ L I PWH+STC +QKD+L+++DS PVFRCI    EIRV+H+*  +ILVNC+RKLVSYSLVRFSNEISR LQLDEQIETSPC*IHD+LNCRG STRGLQIFAVYDIIEGLYPQDWVL+ +PTVLINTPHLHSCAD  L* ALPN
Subject   5973  MKH**IITN*HRILPRQHCLEISPWHESTCRYQKDVLQIEDSRPVFRCICNHFEIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRTLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPN  6458

Range 4: 5974 to 6459 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
261.3 bits(564) 0.0 123/162(76%) 0/162(0%) Minus/Minus
Query        3  HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE  488
                H  LVDH +LA  L S     + SLA+KYL  PKR T  +R* SRLPVH  P *NSR T V   DSRKL+AETCVLLSCPF*QRDLA ASA**TNRNIAVLNT**TQLPG QYPR SDLCSIRHH*RIVSPRLGP   PNCPYQYTPSPQLCR *+LTRFAE
Subject   5974  HETLVDHHKLAPHLASTTLPRDFSLARKYL*IPKRRTPNRR*SSRLPVHLQPL*NSRRTLVIQEDSRKLRAETCVLLSCPF*QRDLAHASA**TNRNIAVLNT**TQLPGLQYPRSSDLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRFAE  6459

Range 5: 5974 to 6459 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 122/162(75%) 0/162(0%) Plus/Plus
Query        3  FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM  488
                FGKA Q L SAQLWRWGVLIRTVG   RTQSWGYNPSMMSYTAKI*RPRVL+PRQLS SCI*HGDVSICSSS*S REISLLKRTRE*DTSFR QFTRI   Y C TRIS+  +MHRKTG+LS   S SFW  QVL CQG I +   R K +C*  MIY*  M
Subject   5974  FGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SVREISLLKRTRE*DTSFRSQFTRIFLDYECTTRISKWLQMHRKTGRLSSIWSTSFWYLQVLSCQGEISRQCCRGKMRC*FVMIY*CFM  6459

Range 6: 5975 to 6394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
252.6 bits(545) 0.0 113/140(81%) 0/140(0%) Plus/Plus
Query        4  SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAREE  423
                SAKRVK Y+RHSCGDGVY**GQLG+  GPSLGDTILQ*CRILQRSE RGY* PGN*V+HVFSTAMFRFVHQAEA ARSRC*NGQESRTQVSA SLRES  +T V REFQ G +CTGRRD+YL   V LFG++RYF ARE+
Subject   5975  SAKRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEACARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKCTGRRDDYLRFGVRLFGIYRYFRAREK  6394

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6

Range 1: 6038 to 6523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
375.0 bits(812) 0.0 156/162(96%) 0/162(0%) Plus/Plus
Query        2  VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                VRQ  SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH
Subject   6038  VRQGASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH  6523

Range 2: 6037 to 6516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 145/160(91%) 0/160(0%) Minus/Minus
Query        1  TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT  480
                T+RSSQTSTASCL++TA +FLPGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA F+SLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVP+V FD  CRT
Subject   6037  TNRSSQTSTASCLDNTASRFLPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFKSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDAPCRT  6516

Range 3: 6038 to 6523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.5 bits(597) 0.0 119/162(73%) 0/162(0%) Minus/Minus
Query        2  MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN  487
                M++**II +*H +L R++ L I PWH+STC +QKD+L+++DS PVF  I    EIRV+H+*  +ILVNC+RKLVSYSLVRFSNEISR LQLDEQIETSP *IH++LNCRG STRGLQIFAVYDIIEGLYPQDWVL+ +PTVLINTPHLHSCAD  L* ALPN
Subject   6038  MKH**IITN*HGILPRQHCLEISPWHESTCRYQKDVLQIEDSRPVFWRICNHFEIRVVHS*SGKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPR*IHNELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPN  6523

Range 4: 6039 to 6524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
248.5 bits(536) 0.0 118/162(73%) 0/162(0%) Plus/Plus
Query        3  FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM  488
                FGKA Q L SAQLWRWGVLIRTVG   RTQSWGYNPSMMSYTAKI*RPRVL+PRQLS  CI* GDVSICSSS*S REISLLKRTRE*DTSFR QFTRI   Y C TRIS+  +M +KTG+LS   S SFW  QVL CQG I +   R K  C*  MIY*  M
Subject   6039  FGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSLCI*RGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFPDYECTTRISKWLQMRQKTGRLSSIWSTSFWYLQVLSCQGEISRQCCRGKMPC*FVMIY*CFM  6524

Range 5: 6039 to 6524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
247.6 bits(534) 0.0 117/162(72%) 0/162(0%) Minus/Minus
Query        3  HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE  488
                H  L+DH +LA  L S     + SLA+KYL  PKR T  +R* SRL  H  P *NSR T V   DSRKL+AETCVLLSCPF*QRDLA ASA**TNRNIA LNT**TQLPG QYPR S+LCSIRHH*RIVSPRLGP   PNCPYQYTPSPQLCR *+LTR AE
Subject   6039  HETLIDHHKLARHLASTTLPRDFSLARKYL*IPKRRTPNRR*SSRLLAHLQPL*NSRRTLVIREDSRKLRAETCVLLSCPF*QRDLALASA**TNRNIAALNT**TQLPGLQYPRSSNLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRLAE  6524

Range 6: 6040 to 6459 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
242.5 bits(523) 0.0 108/140(77%) 0/140(0%) Plus/Plus
Query        4  SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAREE  423
                SA+RVK Y+RHSCGDGVY**GQLG+  GPSLGDTILQ*CRILQR E RGY* PGN*V++VFS AMFRFVHQAEA ARSRC*NGQESRTQVSA SLRES R+T V REFQ G +C  RRD+YL   V LFG++RYF ARE+
Subject   6040  SARRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRFEDRGY*SPGN*VHYVFSAAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSRITSVRREFQSGCKCARRRDDYLRFGVRLFGIYRYFRAREK  6459

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6

Range 1: 2112 to 2597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
367.6 bits(796) 0.0 153/162(94%) 0/162(0%) Plus/Plus
Query        2  VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                VRQ  +K+TIGTAVEMGC  KDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH
Subject   2112  VRQXATKSTIGTAVEMGCXXKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH  2597

Range 2: 2111 to 2590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.0 bits(727) 0.0 145/160(91%) 0/160(0%) Minus/Minus
Query        1  TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT  480
                TSRSSQTSTASCL++TA +FLPGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYM+NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLS   HPISTAVPIV F   CRT
Subject   2111  TSRSSQTSTASCLDNTASRFLPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSXXXHPISTAVPIVDFVAXCRT  2590

Range 3: 2112 to 2597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
272.8 bits(589) 0.0 117/162(72%) 0/162(0%) Minus/Minus
Query        2  MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN  487
                M++**II +*H +L R++   I PWH+S C +QKD+L+++DS PVFR I    EIRV+H+*  +ILVNC+RKLVSYSLVRFSNEISR LQLDEQIETSPC*IHD+LNCRG STRGLQIFAVY IIEGLYPQDWVLT +PTVL  TPHLHSCADS L  ALP+
Subject   2112  MKH**IITN*HGILPRQHCFEISPWHESACRYQKDVLQIEDSRPVFRRICNHFEIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYYIIEGLYPQDWVLT*YPTVLXXTPHLHSCADSRLCRALPD  2597

Range 4: 2116 to 2598 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 118/161(73%) 0/161(0%) Minus/Minus
Query        6  HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFA  488
                H  LVDH +LA  L S   L + SLA+K L  PKR T  +R* SRLP H  P *NSR T V   DSRKL+AETCVLLSCPF*QRDLA ASA**TNRNIAVLNT**TQLPG QYPR SDLCSI HH*RIVSPRLGPH  PNCP  YTPSPQLCR**+L+R A
Subject   2116  HETLVDHHKLARHLASTTLLRDFSLARKCL*IPKRRTPNRR*SSRLPAHLQPL*NSRRTLVIQEDSRKLRAETCVLLSCPF*QRDLALASA**TNRNIAVLNT**TQLPGLQYPRSSDLCSILHH*RIVSPRLGPHLIPNCPXXYTPSPQLCR**TLSRXA  2598

Range 5: 2116 to 2598 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
248.0 bits(535) 0.0 118/161(73%) 0/161(0%) Plus/Plus
Query        6  GKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM  488
                G A Q LLSAQLWRWGV  RTVG  VRTQSWGYNPSMM YTAKI*RPRVL+PRQLS SCI*HGDVSICSSS*S REISLLKRTRE*DTSFR QFTRI   Y C TRIS+  +M RKTG+LS   S SFW  Q L CQG I K   R K  C*  MIY*  M
Subject   2116  GXARQSLLSAQLWRWGVXXRTVGY*VRTQSWGYNPSMM*YTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFLDYECTTRISKWLQMRRKTGRLSSIWSTSFWYLQALSCQGEISKQCCRGKMPC*FVMIY*CFM  2598

Range 6: 2117 to 2554 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.0 bits(511) 0.0 108/146(74%) 0/146(0%) Plus/Plus
Query        7  AKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAREEFTSRTFE  444
                A R K YYRHSCGDGV   GQLG+ *GPSLGDTILQ*C ILQRSE RGY* PGN*V+HVFSTAMFRFVHQAEA ARSRC*NGQESRTQVSA SLRES  +T V REFQ G +C GRRD+YL   V LFG++R+F ARE+  S   E
Subject   2117  AXRDKVYYRHSCGDGVXXXGQLGIR*GPSLGDTILQ*CSILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKCAGRRDDYLRFGVRLFGIYRHFRAREKSRSSVVE  2554

Nucleotide Sequence (781 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
79
158
237
316
395
474
553
632
711
781

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
452.9 1829.2 34% 2.444e-125 47% KU674796.1
451.9 1774.2 35% 4.612e-125 46% JQ023131.1
451.9 1774.2 35% 4.612e-125 46% NC_016509.1
451.0 1796.3 34% 8.748e-125 44% KU674797.1
426.7 1710.2 34% 1.788e-117 46% KT000364.1

Alignments

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 9

Range 1: 5568 to 6317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
452.9 bits(982) 0.0 204/250(82%) 0/250(0%) Minus/Plus
Query       31  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA  780
                G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG++ EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R +++V  RS V  SDGK S+  K L  PVPSSGV SSSGES AT  QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA
Subject   5568  GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYHKREATEGKRIKDEVTPRSRVSVSDGKTSKEAKGLLGPVPSSGVSSSSGESEATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA  6317

Range 2: 5567 to 6316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
415.7 bits(901) 0.0 188/250(75%) 0/250(0%) Plus/Minus
Query       32  AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP  781
                AFAT LKFASYTRNPGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKYMMNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA P+V F+ L  +VA+LSPEEE TP LGTG  R L++ D FPSL  T DR  TS  +R+PSVASR  *STVALR V+LTLPSS+DST CL SRCIP LIT TSPS  +CS   PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P
Subject   5567  AFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDALCRTVASLSPEEELTPELGTGPSRPLASFDVFPSLTDTRDRGVTSSLMRLPSVASRL**STVALRKVILTLPSSRDSTECLKSRCIPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP  6316

Range 3: 5568 to 6317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.0 bits(583) 0.0 134/250(54%) 0/250(0%) Plus/Minus
Query       31  CIRYRLEIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP  780
                CI    EIRV+H+*  +ILV  +RK V   LVRFSN+I+   QLDE +E  P *+HDELNC G STR LQI AVYDIIE     D VLS* PT LI+TP LHS  +  L  AL  GS TF   R +    HRS  TF  L  LP+T  Y GS  + VF   A SS AL+++HS IA    H P I R HR+L I LHPRAH+K +T+ ++ML NLS LIR HSK S TIQI+ +  Y R V  LIISM P
Subject   5568  CICNHFEIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRTLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPNGSLTFA*RRTNPRTWHRSQ*TFSFLRRLPVTHRYAGSRSNFVFDALAFSSFALVIVHSGIA*SNTHPPFI*RFHRMLEITLHPRAHYKHITIAQKMLDNLSRLIRPHSKASLTIQIYCDYAYTRCVTFLIISMKP  6317

Range 4: 5567 to 6319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.9 bits(563) 0.0 130/251(52%) 0/251(0%) Minus/Plus
Query       29  RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSECT  781
                R SC***EML +W K  + + EWSGS+*SA+E*D +  RA + R * +C+E GDAA   A GG+  * E E+   QC+CGL +AR Y*  A+++R  +SI    +* E V G *+S  TCA+ W   F   K  YR  KR +VY+  SCGDGV  *G+LG+RRGP L  ++ Q*C ILQ SE  GY* P N*VHHV S A+ R +HQ E  + S C*NGQE R Q+S   +RES  +T V REFQ G +CT
Subject   5567  RVSC***EMLHIWCKRSHSKFEWSGSL*SAVE*DGRGCRASSGRW*CVCNEPGDAA*FQAFGGISR*REGEYYFTQCHCGLSQARSY*RQAHQRRSYSSIPRIGE*REDVEGS*RSTGTCAKFWG*FFFRRK*GYRSAKRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEACARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKCT  6319

Range 5: 5650 to 6291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 115/214(54%) 0/214(0%) Minus/Plus
Query       57  ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT  698
                EC RIR+ERL SI    V  L**ARGCS I S RW+L M G *    AM LW   SA LL A   KT   +DP Y+ V GR +R +KV  DLC+ +   L + KV LP  KA +S+    LWR GV IR VG *ERT S  +  SMMSYTA+I*R RVL+P+QLSSSC * G  S  SSS*    I LLKRTR   T+FR  +TRI   Y C T
Subject   5650  ECGRIRRERLSSIFWAMVMCL**ARGCSVISSIRWNL*MKGG*VLLYAMPLWTITSAKLLKASASKTKLLLDPAYR*VTGRRRRKLKVYWDLCQVLGLVLLQAKVRLPFGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SVREISLLKRTRE*DTSFRSQFTRIFLDYECTT  6291

Range 6: 5569 to 5610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 10/14(71%) 0/14(0%) Minus/Plus
Query      738  GFMLMMRDATRLA*  779
                GFMLMMR+ T L *
Subject   5569  GFMLMMRNVTHLV*  5610

Range 7: 5743 to 6141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 63/133(47%) 0/133(0%) Plus/Minus
Query      207  QLLGPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA  605
                QL G QYP+ SD CSI HH*+    R GPLL PN PY +TPSPQL +  T  RF  R* HF  +K+     AQV  D   P T S H  +  I+   R   AC Q* RA  +PQ HC    S S H + PP A
Subject   5743  QLPGLQYPRSSDLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRFAER*PHFRLKKN*PQNLAQVPVDL*LPSTSSRHSPIRGIEE*LRL*CACLQ*LRACDSPQWHCVK*YSPSLHLEIPPNA  6141

Range 8: 5569 to 5667 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/33(64%) 0/33(0%) Plus/Minus
Query      681  SYSSAL*TEPDHSDSQ*QHLRQTRSISHHQHES  779
                SYS+AL*+EPDHS+  *  L Q  +ISHHQHE+
Subject   5569  SYSTAL*SEPDHSNLL*LRLHQMCNISHHQHET  5667

Range 9: 6205 to 6324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 22/40(55%) 0/40(0%) Plus/Minus
Query       24  LRVHSLPP*NSRHTHVTLGDSRIRPTEICARPSCPF*QPD  143
                L VH  P *NSR T V   DSR    E C   SCPF*Q D
Subject   6205  LPVHLQPL*NSRRTLVIQEDSRKLRAETCVLLSCPF*QRD  6324

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 9

Range 1: 5492 to 6241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
451.9 bits(980) 0.0 204/250(82%) 0/250(0%) Minus/Plus
Query       31  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA  780
                G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG+I EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R + +V  +S V  +DGK S+  K L  PVPSSGV SSSGESVAT  QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA
Subject   5492  GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYCKREATEGKRVKGEVTPQSRVSVNDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA  6241

Range 2: 5491 to 6240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
414.4 bits(898) 0.0 189/250(76%) 0/250(0%) Plus/Minus
Query       32  AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP  781
                AFAT LKFASYTR PGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA PIV F+ L  +VATLSPEEE TP LGTG  R L++ D FPS   T D   TS   R+PSVASR  *STVALR+V+LTLPSSKDST CL SRCIP LITKTSPS  +CS I PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P
Subject   5491  AFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRTVATLSPEEELTPELGTGPSRPLASFDVFPSFTDTRD*GVTSPLTRLPSVASRLQ*STVALRNVILTLPSSKDSTECLKSRCIPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP  6240

Range 3: 5492 to 6223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 127/244(52%) 0/244(0%) Plus/Minus
Query       49  EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP  780
                EIRV+H+*  +ILV  +RK V    VRFSN+I+   QLDE +E  P *+H+ELN  G STR LQI AVYDIIE     D V +* PT L+ TP LHS  +S L  AL  G +TF   R +    HRS  TF  L  LP+   Y G   +  F   A SS AL +IHS +A C  H P IQR HR+L I LHPRAHH+D+T+ ++ML NLS LIR HSK S TIQI+ +N + R VA LIISM P
Subject   5492  EIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPNGRHTFA*RRTNP*TWHRSQ*TFSFLRRLPVIHRYPGLRSNFAFNALAFSSFALAIIHSGVA*CNTHPPFIQRFHRMLKITLHPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKP  6223

Range 4: 5491 to 6240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.5 bits(512) 0.0 126/250(50%) 0/250(0%) Minus/Plus
Query       32  RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC  781
                R SC***EML +W + C+ + EWSGS+*SA+E*D +D RA +   * L DE GDAA  *A GG+FG* E E+   Q +CGL +AR Y*  A  +R  +SI    +* E V G *+S  TCA+     F   KC  R  KR +VYY  SCGDGV   G+LG+R  P L  ++ Q*C ILQ SE  GY* P +*VH+V S A+ R +HQ E  + S C*NGQ+ R Q+S   +RES   T V REFQ G +C
Subject   5491  RVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGDAA*F*AFGGIFG*REGEYYITQRHCGLLQARSY*RQAR*RRSYSSIPGIGE*REDVEGS*RSTGTCAKFRG*FFFRRKCGDRSAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKC  6240

Range 5: 5574 to 6215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.9 bits(419) 0.0 108/214(50%) 0/214(0%) Minus/Plus
Query       57  ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT  698
                EC RIR+ERL SI    V S **ARGCS I+S RW+LWM G *  H A  LWI  SA LL A   K    ++P Y+ + GR +R +KV  DLC+     L + KV  P  KA +S+L   LWR GV  R VG * +T S  +  SMMSYTA+I*R RVL+P++LSS C * G  S  SSS*    I LLKRT+   T+FR  +TRI   Y C T
Subject   5574  ECGRIRRERLSSIFWVMVMSS**ARGCSVILSIRWNLWMKGG*VLHYATPLWIIASAKLLKASALKAKLLLNPGYR*MTGRRRRKLKVYWDLCQVQGLVLLQAKVWRPFGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTT  6215

Range 6: 5493 to 5534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      738  GFMLMMRDATRLA*  779
                GFMLMMR+AT L *
Subject   5493  GFMLMMRNATHLV*  5534

Range 7: 5667 to 6056 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 60/130(46%) 0/130(0%) Plus/Minus
Query      216  GPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA  605
                G QYP+ SD CSI HH*+    R G  L PN P  +TPSPQL +* T  RF  R  HF  +K+     AQV  D   P T S H  +  I+   R   AC Q* RA  NPQ  C +  S S HPK PP A
Subject   5667  GLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAERSPHFRLKKN*PLNLAQVPVDL*LPSTSSRHSPIPGIEE*LRL*RACLQ*LRACNNPQWRCVM*YSPSLHPKIPPNA  6056

Range 8: 5493 to 5591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query      681  SYSSAL*TEPDHSDSQ*QHLRQTRSISHHQHES  779
                SYS+AL*+EPDHS+ +*Q   Q  SISHHQHE+
Subject   5493  SYSTAL*SEPDHSNLR*QRSHQMCSISHHQHET  5591

Range 9: 6129 to 6248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query       24  LRVHSLPP*NSRHTHVTLGDSRIRPTEICARPSCPF*QPD  143
                L  H  P *NSR T V   DSR    E C    CPF*Q D
Subject   6129  LPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQD  6248

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 9

Range 1: 5492 to 6241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
451.9 bits(980) 0.0 204/250(82%) 0/250(0%) Minus/Plus
Query       31  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA  780
                G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG+I EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R + +V  +S V  +DGK S+  K L  PVPSSGV SSSGESVAT  QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA
Subject   5492  GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYCKREATEGKRVKGEVTPQSRVSVNDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA  6241

Range 2: 5491 to 6240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
414.4 bits(898) 0.0 189/250(76%) 0/250(0%) Plus/Minus
Query       32  AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP  781
                AFAT LKFASYTR PGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA PIV F+ L  +VATLSPEEE TP LGTG  R L++ D FPS   T D   TS   R+PSVASR  *STVALR+V+LTLPSSKDST CL SRCIP LITKTSPS  +CS I PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P
Subject   5491  AFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRTVATLSPEEELTPELGTGPSRPLASFDVFPSFTDTRD*GVTSPLTRLPSVASRLQ*STVALRNVILTLPSSKDSTECLKSRCIPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP  6240

Range 3: 5492 to 6223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 127/244(52%) 0/244(0%) Plus/Minus
Query       49  EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP  780
                EIRV+H+*  +ILV  +RK V    VRFSN+I+   QLDE +E  P *+H+ELN  G STR LQI AVYDIIE     D V +* PT L+ TP LHS  +S L  AL  G +TF   R +    HRS  TF  L  LP+   Y G   +  F   A SS AL +IHS +A C  H P IQR HR+L I LHPRAHH+D+T+ ++ML NLS LIR HSK S TIQI+ +N + R VA LIISM P
Subject   5492  EIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPNGRHTFA*RRTNP*TWHRSQ*TFSFLRRLPVIHRYPGLRSNFAFNALAFSSFALAIIHSGVA*CNTHPPFIQRFHRMLKITLHPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKP  6223

Range 4: 5491 to 6240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.5 bits(512) 0.0 126/250(50%) 0/250(0%) Minus/Plus
Query       32  RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC  781
                R SC***EML +W + C+ + EWSGS+*SA+E*D +D RA +   * L DE GDAA  *A GG+FG* E E+   Q +CGL +AR Y*  A  +R  +SI    +* E V G *+S  TCA+     F   KC  R  KR +VYY  SCGDGV   G+LG+R  P L  ++ Q*C ILQ SE  GY* P +*VH+V S A+ R +HQ E  + S C*NGQ+ R Q+S   +RES   T V REFQ G +C
Subject   5491  RVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGDAA*F*AFGGIFG*REGEYYITQRHCGLLQARSY*RQAR*RRSYSSIPGIGE*REDVEGS*RSTGTCAKFRG*FFFRRKCGDRSAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKC  6240

Range 5: 5574 to 6215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.9 bits(419) 0.0 108/214(50%) 0/214(0%) Minus/Plus
Query       57  ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT  698
                EC RIR+ERL SI    V S **ARGCS I+S RW+LWM G *  H A  LWI  SA LL A   K    ++P Y+ + GR +R +KV  DLC+     L + KV  P  KA +S+L   LWR GV  R VG * +T S  +  SMMSYTA+I*R RVL+P++LSS C * G  S  SSS*    I LLKRT+   T+FR  +TRI   Y C T
Subject   5574  ECGRIRRERLSSIFWVMVMSS**ARGCSVILSIRWNLWMKGG*VLHYATPLWIIASAKLLKASALKAKLLLNPGYR*MTGRRRRKLKVYWDLCQVQGLVLLQAKVWRPFGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTT  6215

Range 6: 5493 to 5534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      738  GFMLMMRDATRLA*  779
                GFMLMMR+AT L *
Subject   5493  GFMLMMRNATHLV*  5534

Range 7: 5667 to 6056 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 60/130(46%) 0/130(0%) Plus/Minus
Query      216  GPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA  605
                G QYP+ SD CSI HH*+    R G  L PN P  +TPSPQL +* T  RF  R  HF  +K+     AQV  D   P T S H  +  I+   R   AC Q* RA  NPQ  C +  S S HPK PP A
Subject   5667  GLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAERSPHFRLKKN*PLNLAQVPVDL*LPSTSSRHSPIPGIEE*LRL*RACLQ*LRACNNPQWRCVM*YSPSLHPKIPPNA  6056

Range 8: 5493 to 5591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query      681  SYSSAL*TEPDHSDSQ*QHLRQTRSISHHQHES  779
                SYS+AL*+EPDHS+ +*Q   Q  SISHHQHE+
Subject   5493  SYSTAL*SEPDHSNLR*QRSHQMCSISHHQHET  5591

Range 9: 6129 to 6248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query       24  LRVHSLPP*NSRHTHVTLGDSRIRPTEICARPSCPF*QPD  143
                L  H  P *NSR T V   DSR    E C    CPF*Q D
Subject   6129  LPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQD  6248

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 10

Range 1: 5633 to 6382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
451.0 bits(978) 0.0 202/250(81%) 0/250(0%) Minus/Plus
Query       31  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA  780
                G HADDE+CY  GVSVVTVNLNG+ARFRVRSNKTG++ EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY+KR+AT+G R +++V  +S V  SDGK S+  K L  PVPSSGV SSSGESVAT  Q  SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA
Subject   5633  GFHADDEKCYTPGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYRKREATEGKRIKDEVTPQSRVSVSDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQGASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA  6382

Range 2: 5632 to 6381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
404.7 bits(877) 0.0 184/250(74%) 0/250(0%) Plus/Minus
Query       32  AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP  781
                AFAT LKFASYTRNPGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA F+SLQY TSLK+ +PKTGSSP TQLSLS HP+STA P+V F+    +VATLSPEEE TP LGTG  R L++ D FPSL  T D   TS  +R+PSVASR  *STVALR V+LTLPSS+DST CL SRCIP LIT TSPS  +CS   PVLF+RTL RA PF+FTVTTLTP  *H SSSA* P
Subject   5632  AFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFKSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDAPCRTVATLSPEEELTPELGTGPSRPLASFDVFPSLTDTRD*GVTSSLMRLPSVASRLR*STVALRKVILTLPSSRDSTECLKSRCIPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPGV*HFSSSA*NP  6381

Range 3: 5633 to 6364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
264.5 bits(571) 0.0 130/244(53%) 0/244(0%) Plus/Minus
Query       49  EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP  780
                EIRV+H+*  +ILV  +RK V   LVRFSN+I+   QLDE +E  PR*+H+ELNC G STR LQI AVYDIIE     D VLS* PT LI+TP LHS  +  L  AL    +TF   R +    HRS  TF  L  LP+T  Y G   + VF   A SS AL ++HS IA    H P I R HR+L I LHPRAH++ +T+ ++ML NLS LIR HSK S TIQI+ +N Y R VA LIISM P
Subject   5633  EIRVVHS*SGKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPR*IHNELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPNSRHTFA*RRTNPRTWHRSQ*TFSFLRRLPVTHRYAGLRSNFVFDALAFSSFALAIVHSGIA*SNTHPPFI*RFHRMLEITLHPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKP  6364

Range 4: 5779 to 6387 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 101/203(50%) 0/203(0%) Minus/Plus
Query       26  DELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSECTR  634
                +E GDAA   A GG+  * E E+   QC+CGL +AR Y*  A+++R  +SI    +* E V G *+S  TCA+ W   F   KC     +R +VY+  SCGDGV  *G+LG+RRGP L  ++ Q*C ILQ  E  GY* P N*VH+V SAA+ R +HQ E  + S C*NGQE R Q+S   +RES R+T V REFQ G +C R
Subject   5779  NEPGDAA*FQAFGGISR*REGEYYFTQCHCGLSQARSY*RQAHQRRSYSSIPRIGE*REDVEGS*RSTGTCAKFWG*FFFRRKCGDCSARRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRFEDRGY*SPGN*VHYVFSAAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSRITSVRREFQSGCKCAR  6387

Range 5: 5632 to 5751 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 25/40(62%) 0/40(0%) Minus/Plus
Query      662  RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRA  781
                R SC***EML  W K C+ + EWSGS+*SA+E*D +  RA
Subject   5632  RVSC***EMLHTWCKRCHSKFEWSGSL*SAVE*DGRGCRA  5751

Range 6: 5715 to 6356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.6 bits(414) 0.0 111/214(52%) 0/214(0%) Minus/Plus
Query       57  ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT  698
                EC RIR+ERL SI    V   **ARGCS I S RW+L M G *    AM LW   SA LL A   KT   ++P Y+ V GR +R +KV  DLC+ +   L + KV     KA +S+    LWR GV IR VG *ERT S  +  SMMSYTA+I*R RVL+P+QLSS C *RG  S  SSS*    I LLKRTR   T+FR  +TRI   Y C T
Subject   5715  ECGRIRRERLSSIFWVMVMCS**ARGCSVISSIRWNL*MKGG*VLLYAMPLWTIASAKLLKASASKTKLLLNPAYR*VTGRRRRKLKVYWDLCQVLGLVLLQAKVWRLFGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSLCI*RGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFPDYECTT  6356

Range 7: 5634 to 5675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      738  GFMLMMRDATRLA*  779
                GFMLMMR+AT L *
Subject   5634  GFMLMMRNATHLV*  5675

Range 8: 5808 to 6206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 59/133(44%) 0/133(0%) Plus/Minus
Query      207  QLLGPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA  605
                QL G QYP+ S+ CSI HH*+    R GPLL PN PY +TPSPQL +  T  R   +  HF  +K+     AQV  D   P T S H  +  I+   R   AC Q* RA  +PQ HC    S S H + PP A
Subject   5808  QLPGLQYPRSSNLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRLAEQSPHFRLKKN*PQNLAQVPVDL*LPSTSSRHSPIRGIEE*LRL*CACLQ*LRACDSPQWHCVK*YSPSLHLEIPPNA  6206

Range 9: 5634 to 5732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 23/33(70%) 0/33(0%) Plus/Minus
Query      681  SYSSAL*TEPDHSDSQ*QHLRQTRSISHHQHES  779
                SYS+AL*+EPDHS+  *Q L Q  SISHHQHE+
Subject   5634  SYSTAL*SEPDHSNLL*QRLHQVCSISHHQHET  5732

Range 10: 6270 to 6389 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 21/40(52%) 0/40(0%) Plus/Minus
Query       24  LRVHSLPP*NSRHTHVTLGDSRIRPTEICARPSCPF*QPD  143
                L  H  P *NSR T V   DSR    E C   SCPF*Q D
Subject   6270  LLAHLQPL*NSRRTLVIREDSRKLRAETCVLLSCPF*QRD  6389

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 10

Range 1: 1707 to 2456 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
426.7 bits(925) 0.0 194/250(78%) 0/250(0%) Minus/Plus
Query       31  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA  780
                G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG++ EHLL D     M+ GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R +++V  +S V   DGK S+  K L  PVPSSGV SSSGESVAT  Q  +K TIG AVE GC  K+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA
Subject   1707  GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDXXXXXMTPGMQRDFKHSVESLDEGRVSITLRNATVDYHKREATEGKRVKDEVTPQSRVSVXDGKKSKEAKGLLGPVPSSGVSSSSGESVATVRQXATKSTIGTAVEMGCXXKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA  2456

Range 2: 1706 to 2455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
385.0 bits(834) 0.0 178/250(71%) 0/250(0%) Plus/Minus
Query       32  AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP  781
                AFAT LKFASYTRNPGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKYMMNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLS   HP+STA PIV F     +VATLSPEEE TP LGTG  R  ++ D FPS   T D   TS   R+PSVASR  *STVALR+V+LTLPSS+DST CL SRCIP +      S  +CS   PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P
Subject   1706  AFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSXXXHPISTAVPIVDFVAXCRTVATLSPEEELTPELGTGPSRPFASFDFFPSXTETRD*GVTSSLTRLPSVASRL**STVALRNVILTLPSSRDSTECLKSRCIPGVXXXXXXSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP  2455

Range 3: 1707 to 2438 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.3 bits(529) 0.0 125/244(51%) 0/244(0%) Plus/Minus
Query       49  EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP  780
                EIRV+H+*  +ILV  +RK V   LVRFSN+I+   QLDE +E  P *+HDELNC G STR LQI AVY IIE     D VL+* PT L  TP LHS  +S L  AL  G +TFT  R +    H S  TF  L  LP+     G   + VF   A SS AL++IHS IA C  H P I R HR+L I LHPR H     + ++ML NLS LIR HSK S T+Q++ +N Y R VA LIISM P
Subject   1707  EIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYYIIEGLYPQDWVLT*YPTVLXXTPHLHSCADSRLCRALPDGRHTFT*RRTNPRTWHWSQ*TFCFLRLLPVXHRNAGLRSNFVFDALAFSSFALVIIHSGIA*CNTHPPFI*RFHRMLEITLHPRGHXXXXXISQKMLDNLSRLIRPHSKASLTVQVYCDNAYTRCVAFLIISMKP  2438

Range 4: 1862 to 2455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.9 bits(430) 0.0 99/198(50%) 0/198(0%) Minus/Plus
Query       32  GDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC  625
                GDAA   A GG+  * E E+   QC+CGL +AR Y*  A ++R  +SI     * E V G  +S  T A+ W   F  *KC  RP  R +VYY  SCGDGV   G+LG+R GP L  ++ Q*C ILQ SE  GY* P N*VHHV S A+ R +HQ E  + S C*NGQE R Q+S   +RES  +T V REFQ G +C
Subject   1862  GDAA*FQAFGGISR*REGEYYITQCHCGLSQARSY*RQARQRRSYSSIPRFGX*REEVEGSKRSTGTSAKFWG*FFFR*KCGDRPAXRDKVYYRHSCGDGVXXXGQLGIR*GPSLGDTILQ*CSILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKC  2455

Range 5: 1706 to 1825 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 24/40(60%) 0/40(0%) Minus/Plus
Query      662  RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRA  781
                R SC***EML +W K C+ + E SGS+*SA+E*D +  RA
Subject   1706  RVSC***EMLHIWCKRCHSKLERSGSL*SAVE*DGRGCRA  1825

Range 6: 1789 to 2430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 106/214(50%) 0/214(0%) Minus/Plus
Query       57  ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT  698
                EC RIR+ERL SI         * RGCS I S RW+L M G *  H AM LWI  SA LL A   KT   ++P ++   GR +R  KV  D C+ +   L +VKV  P+  A +S+L   LWR GV  R VG * RT S  +  SMM YTA+I*R RVL+P+QLSSSC * G  S  SSS*    I LLKRTR   T+FR  +TRI   Y C T
Subject   1789  ECGRIRRERLSSIFWEMXXXXX*PRGCSVISSIRWNL*MKGG*VLHYAMPLWIITSAKLLKASASKTKLLLNPAFRXXTGRSRRKQKVYWDQCQVLGLVLLQVKVWRPSGXARQSLLSAQLWRWGVXXRTVGY*VRTQSWGYNPSMM*YTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFLDYECTT  2430

Range 7: 1708 to 1749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      738  GFMLMMRDATRLA*  779
                GFMLMMR+AT L *
Subject   1708  GFMLMMRNATHLV*  1749

Range 8: 1882 to 2280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 61/133(46%) 0/133(0%) Plus/Minus
Query      207  QLLGPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA  605
                QL G QYP+ SD CSI HH*+    R GP L PN P  +TPSPQL +* T  R  GR  HFH +K+     A V  D   P T S       I+   R   AC Q* RA  NPQ HC +  S S H + PP A
Subject   1882  QLPGLQYPRSSDLCSILHH*RIVSPRLGPHLIPNCPXXYTPSPQLCR**TLSRXAGRSPHFHLKKN*PQNLALVPVDLLLPSTSSRXXPKRGIEE*LRL*RACLQ*LRACDNPQWHCVM*YSPSLHLEIPPNA  2280

Range 9: 1708 to 1806 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query      681  SYSSAL*TEPDHSDSQ*QHLRQTRSISHHQHES  779
                SYS+AL*+EPD S   *Q L Q  SISHHQHE+
Subject   1708  SYSTAL*SEPDRSSLL*QRLHQMCSISHHQHET  1806

Range 10: 2344 to 2463 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 21/40(52%) 0/40(0%) Plus/Minus
Query       24  LRVHSLPP*NSRHTHVTLGDSRIRPTEICARPSCPF*QPD  143
                L  H  P *NSR T V   DSR    E C   SCPF*Q D
Subject   2344  LPAHLQPL*NSRRTLVIQEDSRKLRAETCVLLSCPF*QRD  2463

Nucleotide Sequence (418 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
418

Descriptions

Alignments

Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds

Sequence ID: AF195822.1 Length: 12394 Number of Matches: 6

Range 1: 3521 to 3895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.4 bits(575) 0.0 111/125(89%) 0/125(0%) Plus/Plus
Query       13  LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGKP  387
                LYGLAAVFPRTSVHCFTF T  +VLRCVFCCESYTTLLRENRG*T RRT+ F+V*VRSSTVDRMEVGLDFGTT ST CFSIPTQDD GCVSLVNS FVPTQIFIGSDMTYSIGHRAYSDF+ GKP
Subject   3521  LYGLAAVFPRTSVHCFTFCTRSVVLRCVFCCESYTTLLRENRG*TSRRTNKFVV*VRSSTVDRMEVGLDFGTTFSTSCFSIPTQDDSGCVSLVNSPFVPTQIFIGSDMTYSIGHRAYSDFVAGKP  3895

Range 2: 3519 to 3908 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.4 bits(514) 0.0 103/130(79%) 0/130(0%) Minus/Minus
Query       11  CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD  400
                C V LVC+  N+SKLC QCC SC FL*K ALERT NS TTRTP+ LAWGSKNR+C* * +NQVPLPSYLRLSYVPKR I WS Y FILDFRATMSYSSHNKIHSEAQ+ +Y+K*NSVQKFVGKLPQVHK+
Subject   3519  CKVHLVCQPQNRSKLCDQCCTSCRFL*KFALERTENSPTTRTPNRLAWGSKNRTC*K*SQNQVPLPSYLRLSYVPKRRICWSSYWFILDFRATMSYSSHNKIHSEAQHYEYKK*NSVQKFVGKLPQVHKE  3908

Range 3: 3520 to 3909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.1 bits(509) 0.0 103/130(79%) 0/130(0%) Plus/Plus
Query       12  SLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH  401
                SLWTCGSFPTNFCTLFHF Y   CASLCILL*ELYDIVARKSRIN+*+DQ I RLGT*LNRR*DGSGT*F  Y+QH LFFDPHAR  GVRVV EF VRSNA+FYRK HD+QHW+QSLL F   QT+ T H
Subject   3520  SLWTCGSFPTNFCTLFHFLYS*CCASLCILL*ELYDIVARKSRINQ*EDQQIRRLGT*LNRR*DGSGT*FWDYFQHVLFFDPHARRFGVRVVGEFSVRSNANFYRKRHDVQHWSQSLLRFCGWQTRWTLH  3909

Range 4: 3521 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.8 bits(504) 0.0 108/129(84%) 0/129(0%) Minus/Minus
Query       13  VGCVWFAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK  399
                V   WFA  +I VSSV+NAV HV SYKNLRWNE RIH RHAPRI+LRGDRKT RA+SS +IKSHFHPIYG*ATYLNDE  GP TGLSSIFAQQCRIALTTKYTAKHNTTS KSETVYRSSWENCRKSIK
Subject   3521  VKSTWFASHKIGVSSVTNAVRHVASYKNLRWNERRIHQRHAPRIVLRGDRKTGRAESSPKIKSHFHPIYG*ATYLNDEFVGPPTGLSSIFAQQCRIALTTKYTAKHNTTSTKSETVYRSSWENCRKSIK  3907

Range 5: 3520 to 3894 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.5 bits(501) 0.0 110/125(88%) 0/125(0%) Minus/Minus
Query       12  GLPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R  386
                GLP  KSE*AL PML VMSLPIKICVGTN EFTNDTHP SSCVGIEKQ VL VVPKSSPTSILSTVELRT*T N LVLL VYPRFSRNNVV*LSQQNTQRST  +V KVKQCTEVRGKTAASP*R
Subject   3520  GLPATKSE*AL*PMLYVMSLPIKICVGTNGEFTNDTHPESSCVGIEKQDVLKVVPKSSPTSILSTVELRT*TTNLLVLLLVYPRFSRNNVV*LSQQNTQRSTTLRVQKVKQCTEVRGKTAASP*R  3894

Range 6: 3522 to 3827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 92/102(90%) 0/102(0%) Plus/Plus
Query       14  FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF  319
                FMDLRQFSHELLYTVSLF+LVVLCFAVYFVVRAIRHCCAKIEDKPV GP NSSFRYVAQP*IGWKWDLI  LLSAR VFRSPRK IRGACR *IL SFQR+F
Subject   3522  FMDLRQFSHELLYTVSLFVLVVLCFAVYFVVRAIRHCCAKIEDKPVGGPTNSSFRYVAQP*IGWKWDLILGLLSARPVFRSPRKTIRGACRW*ILRSFQRKF  3827

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6

Range 1: 9770 to 10141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.5 bits(547) 0.0 106/124(85%) 0/124(0%) Plus/Plus
Query       13  LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGK  384
                LYGLAAVFPRTSVHCFTFHTC +VLR VF CESYTTLLRENRG*TGRRT+  IV VR +TVDRMEVGLDFGTT ST CFSIPTQDD GCVSLVNS FVP+QIFIG+DMTYSIGHRAYSDF+ GK
Subject   9770  LYGLAAVFPRTSVHCFTFHTCSVVLRRVFYCESYTTLLRENRG*TGRRTNESIVQVRRATVDRMEVGLDFGTTFSTSCFSIPTQDDSGCVSLVNSPFVPSQIFIGTDMTYSIGHRAYSDFVAGK  10141

Range 2: 9769 to 10140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.5 bits(488) 0.0 106/124(85%) 0/124(0%) Minus/Minus
Query       12  LPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R  383
                LP  KSE*ALCPML VMS+PIKIC GTN EFTNDTHP SSCVGIEK  VL VVPKSSPTSILSTV  RT*TM+ LVLLPVYPRFSRNNVV*LSQ NT+RST  QV*KVKQCTEVRGKTAASP*R
Subject   9769  LPATKSE*ALCPMLYVMSVPIKICDGTNGEFTNDTHPESSCVGIEKHDVLKVVPKSSPTSILSTVARRT*TMDSLVLLPVYPRFSRNNVV*LSQ*NTRRSTTLQV*KVKQCTEVRGKTAASP*R  10140

Range 3: 9768 to 10157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.8 bits(480) 0.0 97/130(75%) 0/130(0%) Minus/Minus
Query       11  CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD  400
                C V  VCR  N+SKL V+CC SC FL*KS +ERT NS T RTP+HLAWG KN +C* * +N+VPLPSYLRL  VP+R I WSF RFILDFRATMSYSSHNKIH EAQ+ KYEK*NSVQKFVGKLPQVHK+
Subject   9768  CKVHHVCRPQNRSKLYVRCCMSCRFL*KSVMERTENSPTIRTPNHLAWGLKNMTC*K*YQNRVPLPSYLRLRDVPERWIRWSFCRFILDFRATMSYSSHNKIHDEAQHYKYEK*NSVQKFVGKLPQVHKE  10157

Range 4: 9769 to 10158 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 97/130(75%) 0/130(0%) Plus/Plus
Query       12  SLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH  401
                SLWTCGSFPTNFCTLFHFSYL  CAS CILL*ELYDIVARKSRINR KDQ IHR GT  NRR*DGSGT F +Y+ H +FF+PHAR* GVR+V EF VRS  DFYR  HD+QH T SLL F  RQT  T H
Subject   9769  SLWTCGSFPTNFCTLFHFSYL*CCASSCILL*ELYDIVARKSRINRQKDQRIHRSGTSRNRR*DGSGTRFWYYF*HVMFFNPHAR*FGVRIVGEFSVRSITDFYRNRHDIQHRT*SLLRFCGRQTWWTLH  10158

Range 5: 9770 to 10141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.2 bits(448) 0.0 100/124(81%) 0/124(0%) Minus/Minus
Query       13  FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK  384
                FAG +I VSS+S+AV HV SYKNL WNE RIH R+APRIILRGD KT RA SS +I+SHFHPIYG ATYLND   GPS GLSSIFAQQCRIALT KYT KHNTTSMKSETVYRSSWENCRKSIK
Subject   9770  FAGHKIGVSSMSDAVCHVGSYKNL*WNERRIHQRYAPRIILRGD*KT*RAKSSTKIESHFHPIYGCATYLNDGFVGPSAGLSSIFAQQCRIALTIKYTTKHNTTSMKSETVYRSSWENCRKSIK  10141

Range 6: 9771 to 10076 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 86/102(84%) 0/102(0%) Plus/Plus
Query       14  FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF  319
                FMDLRQFSHELLYTVSLFILVVLCF VYF+VRAIRHCCAKIEDKP EGP N SFRYVAQP*IGWKWD I  LL AR VF+SPRKMIRGA R *IL SF  RF
Subject   9771  FMDLRQFSHELLYTVSLFILVVLCFVVYFIVRAIRHCCAKIEDKPAEGPTNPSFRYVAQP*IGWKWDSILVLLLARHVFQSPRKMIRGAYRW*ILRSFHHRF  10076

Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds

Sequence ID: EF103901.1 Length: 5715 Number of Matches: 6

Range 1: 3444 to 3815 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
246.7 bits(532) 0.0 104/124(84%) 0/124(0%) Plus/Plus
Query       13  LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGK  384
                LYGLAAVFPRTSV+CFTF TC +VLR VF CESYTTLL E+RG*TGRRT+ FIV VRSSTVDRMEVGLDFGTT ST CFSIPT+DD GCVSLVNS FVP+QIFIG+DMTYSIGHRAYSDF+ GK
Subject   3444  LYGLAAVFPRTSVYCFTFCTCSVVLRRVFYCESYTTLLHEDRG*TGRRTNEFIVQVRSSTVDRMEVGLDFGTTFSTSCFSIPTRDDSGCVSLVNSPFVPSQIFIGTDMTYSIGHRAYSDFVAGK  3815

Range 2: 3442 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.3 bits(492) 0.0 97/130(75%) 0/130(0%) Minus/Minus
Query       11  CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD  400
                C V  VCR  N++KL V+CC SC FL*KS + RT NS T RTP+HLAWG KN +C* * RN+VPLPSYLRLSYVP+R*I WSFYRFILD RATMSYSSHNKIH EAQ+ KY+K*NS+QKFVGKLPQVHK+
Subject   3442  CKVHHVCRPQNRNKLYVRCCTSCRFL*KSVMVRTENSPTIRTPNHLAWGLKNMTC*K*YRNRVPLPSYLRLSYVPER*IRWSFYRFILDLRATMSYSSHNKIHGEAQHYKYKK*NSIQKFVGKLPQVHKE  3831

Range 3: 3443 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 96/130(74%) 0/130(0%) Plus/Plus
Query       12  SLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH  401
                SLWTCGSFPTNFC LFHF YL  CAS CILL*ELYDIVAR+SRINR*KDQ IHR GT*LNRR*DGSGT FR+Y+ H +FF+PHAR* GVR+V EF VR+  DFYR  HD+QH T SL  F  RQT  T H
Subject   3443  SLWTCGSFPTNFCILFHFLYL*CCASPCILL*ELYDIVARRSRINR*KDQRIHRSGT*LNRR*DGSGTRFRYYF*HVMFFNPHAR*FGVRIVGEFSVRTITDFYRNRHDVQHRT*SLFRFCGRQTWWTLH  3832

Range 4: 3443 to 3814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 104/124(84%) 0/124(0%) Minus/Minus
Query       12  LPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R  383
                LP  KSE*ALCPML VMS+PIKIC GTN EFTNDTHP SS VGIEK  VL VVPKSSPTSILSTVELRT*TMN LVLLPVYPR S NNVV*LSQ NT+RST  QV KVKQ TEVRGKTAASP*R
Subject   3443  LPATKSE*ALCPMLYVMSVPIKICDGTNGEFTNDTHPESSRVGIEKHDVLKVVPKSSPTSILSTVELRT*TMNSLVLLPVYPRSSCNNVV*LSQ*NTRRSTTLQVQKVKQYTEVRGKTAASP*R  3814

Range 5: 3444 to 3815 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.2 bits(448) 0.0 100/124(81%) 0/124(0%) Minus/Minus
Query       13  FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK  384
                FAG +I +SS+S+AV HV SYKNL W E RIH R+APRII RGD KT RA SS EI+SHFHPIYG*ATYLNDE  GPSTGLSSIF QQCRIALT KYTAKHNTTS KSETVYRSSWENCRKSIK
Subject   3444  FAGHKIGISSMSDAVRHVGSYKNL*WYERRIHQRYAPRIISRGD*KT*RAKSSTEIESHFHPIYG*ATYLNDEFVGPSTGLSSIFVQQCRIALTIKYTAKHNTTSTKSETVYRSSWENCRKSIK  3815

Range 6: 3445 to 3750 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.9 bits(443) 0.0 86/102(84%) 0/102(0%) Plus/Plus
Query       14  FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF  319
                FMDLRQFSHELLYTVSLF+LVVLCFAVYF+VRAIRHCC KIEDKPVEGP NSSFRYVAQP*IGWKWD IS LL AR VF+SPR+MIRGA R *IL S+  RF
Subject   3445  FMDLRQFSHELLYTVSLFVLVVLCFAVYFIVRAIRHCCTKIEDKPVEGPTNSSFRYVAQP*IGWKWDSISVLLLARHVFQSPREMIRGAYRW*ILRSYHHRF  3750

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6

Range 1: 10033 to 10401 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
246.2 bits(531) 0.0 103/123(84%) 0/123(0%) Plus/Plus
Query       16  YGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGK  384
                YGLAAVFPRTSVHCFTFHTC +VLR VF CES TTLLR+NRG*TGRRT+ FIV VR STVDRMEVGLDFGTT ST C+SIPTQ D GCVSLVNS FVP+QIFIG+DMTYSIGHRAYSDF+ GK
Subject  10033  YGLAAVFPRTSVHCFTFHTCSVVLRRVFYCESCTTLLRKNRG*TGRRTNEFIVQVRRSTVDRMEVGLDFGTTFSTSCYSIPTQGDSGCVSLVNSPFVPSQIFIGTDMTYSIGHRAYSDFVAGK  10401

Range 2: 10020 to 10400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 102/127(80%) 0/127(0%) Minus/Minus
Query        3  LPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*RHRH  383
                LP  KSE*ALCPML VMS+PIKIC GTN EFTNDTHP S CVGIE   VL VVPKSSPTSILSTVE RT TMN LVLLPVYPRF RNNVV LSQ NT+RST  QV*KVKQCTEVRGKTAASP*+ ++
Subject  10020  LPATKSE*ALCPMLYVMSVPIKICDGTNGEFTNDTHPESPCVGIE*HDVLKVVPKSSPTSILSTVERRTCTMNSLVLLPVYPRFLRNNVVQLSQ*NTRRSTTLQV*KVKQCTEVRGKTAASP*KPKN  10400

Range 3: 10028 to 10417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.5 bits(453) 0.0 94/130(72%) 0/130(0%) Minus/Minus
Query       11  CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD  400
                C V   CR  N+SK  V+CC SC FL*KS +ERT NS T RTP+HLAW   N +C* * +N+VPLPSYLRLS VP R*I WSF RFILDF ATMSYSSHNKIH EAQ+ KYEK*NSVQKFVGKLPQVHK+
Subject  10028  CKVHHFCRPQNRSKPYVRCCMSCRFL*KSVMERTENSPTIRTPNHLAWELNNTTC*K*YQNRVPLPSYLRLSDVPVR*IRWSFCRFILDFCATMSYSSHNKIHDEAQHYKYEK*NSVQKFVGKLPQVHKN  10417

Range 4: 10032 to 10418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.0 bits(441) 0.0 92/129(71%) 0/129(0%) Plus/Plus
Query       15  LWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH  401
                LWTCGSFPTNFCTLFHFSYL  CAS CILL*ELYDIVA+KSRINR KDQ IHR GT LNRR*DGSGT F +Y+ H + F+ HAR* GVR+V EF VRS  DFYR  HD+QH T  LL F  RQ   T H
Subject  10032  LWTCGSFPTNFCTLFHFSYL*CCASSCILL*ELYDIVAQKSRINRQKDQRIHRTGTSLNRR*DGSGTRFWYYF*HVVLFNSHAR*FGVRIVGEFSVRSITDFYRNRHDIQHRT*GLLRFCGRQKWWTLH  10418

Range 5: 10027 to 10401 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 97/125(78%) 0/125(0%) Minus/Minus
Query       10  FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIKT  384
                FAG +I VS +S+AV HV SYKNL WNE RIH R+APRI LRG+  T RA SS +I+SHFHPIYG*ATYL DE  GPS GLSSIFAQQCR ALT KYT KHNTTSMKSETVYRSSWENCRKSIKT
Subject  10027  FAGHKIGVSPMSDAVCHVGSYKNL*WNERRIHQRYAPRITLRGN*ITRRAKSSTKIESHFHPIYG*ATYLYDEFVGPSAGLSSIFAQQCRTALTIKYTTKHNTTSMKSETVYRSSWENCRKSIKT  10401

Range 6: 10028 to 10336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 83/103(81%) 0/103(0%) Plus/Plus
Query       11  VFMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF  319
                VFMDLRQFSHELLYTVSLFILVVLCF VYF+VRA+RHCCAKIEDKP EGP NSS+RYVAQP*IGWKWD I  LL AR V + PRK+IRGA R *IL SF  RF
Subject  10028  VFMDLRQFSHELLYTVSLFILVVLCFVVYFIVRAVRHCCAKIEDKPAEGPTNSSYRYVAQP*IGWKWDSILVLLLARRVIQFPRKVIRGAYRW*ILRSFHHRF  10336

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 9676 to 10050 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 91/125(73%) 0/125(0%) Plus/Plus
Query       13  LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGKP  387
                LYGLA VFPRTS++ F+F+T  +V   +F  +SY+ LL ENRG*TG RT  FIV*VRSSTVD MEVGLDFGTT ST CFS+P++DD GCV+LVNS FVPTQ+FIGSDMTYSIGHRAYSDF+ GKP
Subject   9676  LYGLATVFPRTSIYRFSFYTSSLVFCRIFYRKSYSALLCENRG*TGARTRKFIV*VRSSTVDGMEVGLDFGTTFSTACFSVPSEDDSGCVTLVNSPFVPTQVFIGSDMTYSIGHRAYSDFVAGKP  10050

Range 2: 9676 to 10047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 92/124(74%) 0/124(0%) Minus/Minus
Query       13  FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK  384
                FA  +I V SV NA+ H+TSYKNLRWNE RIH R+AP II R +RKT R +SSAEIKSHFH +YG*ATYL DE  G  TGLSSIFAQQCRIALT KYT KH  TS+K ETVYRSSWENCRKSIK
Subject   9676  FACYKIGVGSVPNAIRHITSYKNLRWNERRIHQRYAPGIIFRWNRKTSRTESSAEIKSHFHSVYG*ATYLYDEFPGSRTGLSSIFAQQCRIALTIKYTTKHKATSIKRETVYRSSWENCRKSIK  10047

Range 3: 9677 to 9982 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.9 bits(419) 0.0 85/102(83%) 0/102(0%) Plus/Plus
Query       14  FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF  319
                FMDLRQFSHELLYTVSLFILV LCF VYF+VRAIRHCCAKIEDKPV  P NSS+RYVAQP*  WKWDLISALLS R VFR  RKMI GA R *IL SFQRRF
Subject   9677  FMDLRQFSHELLYTVSLFILVALCFVVYFIVRAIRHCCAKIEDKPVREPGNSSYRYVAQP*TEWKWDLISALLSVRLVFRFHRKMIPGA*RW*ILRSFQRRF  9982

Range 4: 9675 to 10049 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 89/125(71%) 0/125(0%) Minus/Minus
Query       12  GLPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R  386
                GLP  KSE*ALCPML V+SLPIK CVGTN EFTN THP SS  G EKQ VL VVPKSSPTSI STVELRT TMN LVL PVYPRFS N+  *L + N +++T   V*K K+  EVRGKT ASP*R
Subject   9675  GLPATKSE*ALCPMLYVISLPIKTCVGTNGEFTNVTHPESSSDGTEKQAVLKVVPKSSPTSIPSTVELRTYTMNFLVLAPVYPRFSHNSAE*LLR*NIRQNTRLLV*KEKRYIEVRGKTVASP*R  10049

Range 5: 9669 to 10058 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 81/130(62%) 0/130(0%) Plus/Plus
Query        6  SVSLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHT  395
                ++SLWTC SFPTNF   F F Y   C    IL *EL+  V RKSRINR ++Q IHR+GT*LNRR +GSGT*FRHY+Q+ LFF    R*  VR V EF VRSNA FYRK*+D+ HW QSLL F  RQT+ T
Subject   9669  TLSLWTCDSFPTNFYIPFLFLY**PCVLSYILS*ELFGTVVRKSRINRCENQEIHRIGT*LNRRRNGSGT*FRHYFQYGLFFGSIGR*FRVRNVGEFSVRSNAGFYRK*YDV*HWAQSLLRFCSRQTRGT  10058

Range 6: 9671 to 10048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 76/126(60%) 0/126(0%) Minus/Minus
Query        8  VCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKDT  385
                VC   N+S+LC QC  S HFL*K ALERT NS T RT +HL    KN+  * *CRNQVPLP  LRLSYVP R*ISW  +RFILDFR T+  SS++KI+ + Q   Y+K N + KFVGKL QVHK++
Subject   9671  VCLLQNRSRLCAQCYTSYHFL*KPALERTENSPTLRTRNHLPMEPKNKPY*K*CRNQVPLPFRLRLSYVPIR*ISWFSHRFILDFRTTVPNSSYDKIYDKTQGY*YKKRNGI*KFVGKLSQVHKES  10048

Nucleotide Sequence (646 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
65
130
195
260
325
390
455
520
585
646

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 13

Range 1: 16051 to 16692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
427.2 bits(926) 0.0 176/214(82%) 0/214(0%) Minus/Plus
Query        4  QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG  645
                +N L +   FGGSHGAKLRPFVYYG SYYYNERMTPTEIS D+ DYVDIEI+LNLSKK+VVTAASVNGIDMPCLGY LKNGSLRFGHEIIFHVI DDLHYL+D STRNKRIEGLYTESKIKVDDGDVLL D+EMAG R +R YSNNKGVEPSVHV NVR W+TLF+IT+SVTTTDV +   EN+MLYYEVFDKNLEDVAK C YSEIPN  VAG
Subject  16051  KNTLELGVDFGGSHGAKLRPFVYYGGSYYYNERMTPTEISTDMLDYVDIEISLNLSKKSVVTAASVNGIDMPCLGYTLKNGSLRFGHEIIFHVIGDDLHYLIDKSTRNKRIEGLYTESKIKVDDGDVLLGDIEMAGNRSDRAYSNNKGVEPSVHVTNVRDWRTLFDITSSVTTTDVAYPTIENAMLYYEVFDKNLEDVAKVCGYSEIPNVAVAG  16692

Range 2: 16095 to 16604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
285.6 bits(617) 0.0 142/170(84%) 0/170(0%) Plus/Minus
Query       92  IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA  601
                I FS     TSVVVTE VISN V Q LTF+TCTEGSTPLLFEY LS RLPAIS S SSTSPSSTFI DSVYSPSIRLFLVD+S R*CKSS +T*NIISCPNRSDPFFR YP+HGISIPLTEAAVTT FF+RLRLIS+ST*SNIS+DISVGVIRSL**YE P**TKGRN A
Subject  16095  IAFSIVGYATSVVVTEDVISNNVLQSLTFVTCTEGSTPLLFEYALSERLPAISMSPSSTSPSSTFIFDSVYSPSIRLFLVDLSIR*CKSSPMT*NIISCPNRSDPFFRVYPKHGISIPLTEAAVTTLFFDRLRLISIST*SNISVDISVGVIRSL**YEPP**TKGRNLA  16604

Range 3: 16641 to 16694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/18(67%) 0/18(0%) Plus/Minus
Query        2  DPATVAFGISE*LQAFAT  55
                +PAT  FGISE*   FAT
Subject  16641  NPATATFGISE*PHTFAT  16694

Range 4: 16363 to 16692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 75/110(68%) 0/110(0%) Plus/Minus
Query        4  SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IFKFFMSNVRRCD*SCYFEQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFISG*  333
                SGNR VRYFRI   F YVF*IFI+YFIV+H IF   + NVRR D  CY E   P SHV +VH GL+PFIV*I S+*+ TCHLD+S**Y++V++LYF FCIQPFDSFISG*
Subject  16363  SGNRHVRYFRITAYFRYVF*IFIEYFIVKHRIFNCRVRNVRRRDRRCYIE*CSPISHVCDVHRGLNPFIV*ICSV*AITCHLDVS**YVSVINLYF*FCIQPFDSFISG*  16692

Range 5: 16076 to 16303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 60/76(79%) 0/76(0%) Plus/Minus
Query      393  TAATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN  620
                TAAT FSE+TL TAYRFH*LK  L HFSL D*D*SQ  RN  YLSISQ  SFVHCNNMN+HSKQRAVT RHDYPR+
Subject  16076  TAATRFSEYTLSTAYRFH*LKRLLRHFSLTD*D*SQYLRNPTYLSISQSESFVHCNNMNHHSKQRAVT*RHDYPRS  16303

Range 6: 16361 to 16693 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 74/111(67%) 0/111(0%) Minus/Plus
Query        3  HQPEINESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD  335
                +QPEINESKGCIQN K*R  T  YY*E SRWQV    E+IQTIKG SP CT  T*E+G   S * L S+RRTL    LK++C TMKY IKI*KT*+K   IRKYRT RLPD
Subject  16361  NQPEINESKGCIQNQK*RLMTETYY*ETSRWQVIAQTEHIQTIKGLSPLCTSQT*EIGEHYSI*HLLSRRRTLRTLQLKMRCFTMKYSIKI*KT*RKYAVIRKYRTWRLPD  16693

Range 7: 16079 to 16315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 61/79(77%) 0/79(0%) Minus/Plus
Query      381  SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR  617
                SGVVMA SYGPLFTMV+HIITMNE* +LRYR+I  IT  LRL+LI QRK+ *+ LQ MESICRA*G+L*K GRCGSDTR
Subject  16079  SGVVMALSYGPLFTMVVHIITMNE*LRLRYRQICWIT*ILRLVLICQRKVS*QPLQSMESICRA*GIL*KTGRCGSDTR  16315

Range 8: 16075 to 16314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 62/80(78%) 0/80(0%) Plus/Minus
Query      382  LVSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI  621
                LVSEPQRP+FQSIP*ARHIDSI+*S  Y  FL*+IK NLN+ VI++I RYLS  HSFIVII* TIVNKGP*L AMTTPE+
Subject  16075  LVSEPQRPVFQSIP*ARHIDSID*SGCYDTFL*QIKTNLNIYVIQHICRYLSRSHSFIVII*TTIVNKGP*LSAMTTPEV  16314

Range 9: 16556 to 16693 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 30/46(65%) 0/46(0%) Plus/Minus
Query        3  IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQIFHV*RPSL*LK  140
                IRQP RSVFPN+  L LRLLDFY+ILHS+A +FQ+    RPS * K
Subject  16556  IRQPPRSVFPNNRILSLRLLDFYRILHSKASHFQL*GTQRPSS*QK  16693

Range 10: 16340 to 16408 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 21/23(91%) 0/23(0%) Plus/Minus
Query      288  F*ILYTALRFVYFWLMYLLDNVN  356
                F ILYTALRFVYFWL+YLLDNVN
Subject  16340  FLILYTALRFVYFWLIYLLDNVN  16408

Range 11: 16080 to 16409 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 88/110(80%) 0/110(0%) Minus/Plus
Query      287  RG*SWREVTAXXXXXXXXXXX*TNDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVYRI*N  616
                RG*SWR VTALCLLW FILLQ*TND +*DI+RY+ LR +*D*S*S KEKC N  FS WNRYAV RV SEK VAAVRTRDYISR+ RRFTLS+R INQK*TNRRAVYRI N
Subject  16080  RG*SWR*VTALCLLWWFILLQ*TNDSD*DIDRYVGLRRY*D*S*SVKEKCRNSRFSQWNRYAVLRVYSEKRVAAVRTRDYISRHWRRFTLSNR*INQK*TNRRAVYRIKN  16409

Range 12: 16536 to 16622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 15/29(52%) 0/29(0%) Minus/Plus
Query       74  DLVRNNSFSHNDGR*T*KI*KFNALL*SI  160
                +++R N F H+DGR     *K +ALL*SI
Subject  16536  NIIRYNIFCHDDGRCVPYN*KCDALL*SI  16622

Range 13: 16662 to 16694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 10/11(91%) 0/11(0%) Minus/Plus
Query        2  FGNTERYGCRI  34
                FGNTER GCRI
Subject  16662  FGNTERGGCRI  16694

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 13

Range 1: 15790 to 16431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
421.7 bits(914) 0.0 175/214(82%) 0/214(0%) Minus/Plus
Query        4  QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG  645
                +N L +   FGGSHGAKLRPFVYYG+SYYYNERMTPTEISRD+ DYVDIEI+LNLSKK VVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHV DDDLHYLVD STRNKRIEGL TESK++VDDGDVLL DVEMAG R +R YSNNKGVEPSVHV NVR W+TLF++TASVTTTDV +   E  MLYYE+FDKNLEDVAK C YSEIPN  VAG
Subject  15790  KNTLELGVDFGGSHGAKLRPFVYYGDSYYYNERMTPTEISRDMLDYVDIEISLNLSKKRVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVNDDDLHYLVDKSTRNKRIEGLCTESKVEVDDGDVLLGDVEMAGERSDRAYSNNKGVEPSVHVTNVRDWRTLFDVTASVTTTDVVYPTIEKEMLYYELFDKNLEDVAKVCGYSEIPNVAVAG  16431

Range 2: 15834 to 16343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
286.1 bits(618) 0.0 143/170(84%) 0/170(0%) Plus/Minus
Query       92  IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA  601
                I FS     TSVVVTEAV SN V Q LTF+TCTEGSTPLLFEY LS R PAISTS S+TSPSST   DSV+SPSIRLFLVD+STR*CKSSS+T*NIISCPNRSDPFFRAYP+HGISIPLTEAAVTT FFERLRLIS+ST*SNISLDISVGVIRSL**YE P**TKGRN A
Subject  15834  ISFSIVGYTTSVVVTEAVTSNNVLQSLTFVTCTEGSTPLLFEYALSERSPAISTSPSNTSPSSTSTFDSVHSPSIRLFLVDLSTR*CKSSSLT*NIISCPNRSDPFFRAYPKHGISIPLTEAAVTTLFFERLRLISIST*SNISLDISVGVIRSL**YESP**TKGRNLA  16343

Range 3: 16380 to 16433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/18(67%) 0/18(0%) Plus/Minus
Query        2  DPATVAFGISE*LQAFAT  55
                +PAT  FGISE*   FAT
Subject  16380  NPATATFGISE*PHTFAT  16433

Range 4: 16102 to 16431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 73/110(66%) 0/110(0%) Plus/Minus
Query        4  SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IFKFFMSNVRRCD*SCYFEQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFISG*  333
                SGNR+VRYFRI   F YVF*IFI+ FIV+H  F   + NVRR D SCY E   P SHV +VH GLDPFIV*+ S+*+ TCH D+S**YITV++LYF F  QPFDSFISG*
Subject  16102  SGNRNVRYFRITAYFRYVF*IFIE*FIVKHLFFNCRVYNVRRRDRSCYIE*CSPISHVCDVHRGLDPFIV*VCSV*ALTCHFDVS**YITVINLYF*FSTQPFDSFISG*  16431

Range 5: 15814 to 16053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 62/80(78%) 0/80(0%) Plus/Minus
Query      382  LVSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI  621
                LVSEPQRP+FQSIP*ARHID IN*S RY  FL KIK NLN+ V+++ISRYLS  HSF+VII*ITIVN+GP*L AMTTPE+
Subject  15814  LVSEPQRPVFQSIP*ARHIDPIN*SGRYNSFLRKIKTNLNIYVVQHISRYLSRSHSFVVII*ITIVNEGP*LSAMTTPEV  16053

Range 6: 16100 to 16432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 74/111(67%) 0/111(0%) Minus/Plus
Query        3  HQPEINESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD  335
                +QPEINESKGC+ N K*R  TVMYY*E S+WQV    E+ QTIKGSSP CT  T*E+G   S *QL S+RRTL    LK +C TM Y IKI*KT*+K   IRKYRTLRLPD
Subject  16100  NQPEINESKGCVLNQK*RLMTVMYY*ETSKWQVSAQTEHTQTIKGSSPLCTSQT*EIGEHYSM*QLLSRRRTLYTLQLKKRCFTMNYSIKI*KT*RKYAVIRKYRTLRLPD  16432

Range 7: 15818 to 16054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 62/79(78%) 0/79(0%) Minus/Plus
Query      381  SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR  617
                SGVVMA SYGP FTMVIHIIT NE* +LRYREI   T  LRL+LIF+RK  *R LQLM SICRA*GML*K GRCGSDTR
Subject  15818  SGVVMALSYGPSFTMVIHIITTNE*LRLRYREICWTT*ILRLVLIFRRKEL*RPLQLMGSICRA*GML*KTGRCGSDTR  16054

Range 8: 15815 to 16042 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 57/76(75%) 0/76(0%) Plus/Minus
Query      393  TAATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN  620
                TAAT FSEHTL TAYR H*LK PL  FS KD*D*SQ  R+  YLSISQ  SFV CNNMN+HSK+RAVT RHDYPR+
Subject  15815  TAATRFSEHTLSTAYRSH*LKRPLQLFSSKD*D*SQYLRSPTYLSISQSESFVRCNNMNHHSKRRAVT*RHDYPRS  16042

Range 9: 16295 to 16432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 29/46(63%) 0/46(0%) Plus/Minus
Query        3  IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQIFHV*RPSL*LK  140
                IRQP RSVFPN+  L LRLLDFY+I+HS+A  FQ+  + RPS * K
Subject  16295  IRQPQRSVFPNNRILSLRLLDFYRIIHSKASLFQL*GIQRPSS*QK  16432

Range 10: 16079 to 16141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 19/21(90%) 0/21(0%) Plus/Minus
Query      294  ILYTALRFVYFWLMYLLDNVN  356
                I YTALRFVYFWL+YLLDNVN
Subject  16079  IQYTALRFVYFWLIYLLDNVN  16141

Range 11: 15819 to 16136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.2 bits(339) 0.0 88/106(83%) 0/106(0%) Minus/Plus
Query      299  RG*SWREVTAXXXXXXXXXXX*TNDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY  616
                RG*SWR VTAL LLW*FILLQ TND +*DIERY+ LR +*D*S*SF+EK  NG FS*W+RYAV RVCSEK VAAVRTRDYISR *RRFTLSSR INQK*TNRRAVY
Subject  15819  RG*SWR*VTALRLLW*FILLQRTNDSD*DIERYVGLRRY*D*S*SFEEKSCNGRFS*WDRYAVLRVCSEKRVAAVRTRDYISRQ*RRFTLSSR*INQK*TNRRAVY  16136

Range 12: 16401 to 16433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 10/11(91%) 0/11(0%) Minus/Plus
Query        2  FGNTERYGCRI  34
                FGNTER GCRI
Subject  16401  FGNTERCGCRI  16433

Range 13: 16275 to 16361 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 15/29(52%) 0/29(0%) Minus/Plus
Query       74  DLVRNNSFSHNDGR*T*KI*KFNALL*SI  160
                +++R NSF H+DGR     *K +ALL* I
Subject  16275  NIIRCNSFCHDDGRCIPYN*KRDALL*II  16361

Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds

Sequence ID: AF195822.1 Length: 12394 Number of Matches: 13

Range 1: 9549 to 10190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
408.0 bits(884) 0.0 170/214(79%) 0/214(0%) Minus/Plus
Query        4  QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG  645
                +N L +   FGGSHGAKLRPFVYYG SYYYNE+MTPTEIS D+ DYVD+EI+L LSKK VVTAASVNGID+PC+GY L+NGSLRFGHEIIFHV D++L YLVD STRNKRIEGLYTE+ IKVDDG+VLL DVEMA  R+ R YSNNKGVEPSVHV NVRG KTLF+ITASV TTDVRH K E +MLYYEVFDKNLEDVAK CSYSEIPN TVAG
Subject   9549  KNTLELGVDFGGSHGAKLRPFVYYGGSYYYNEQMTPTEISSDLLDYVDVEISLTLSKKRVVTAASVNGIDVPCIGYTLENGSLRFGHEIIFHVNDEELRYLVDKSTRNKRIEGLYTEAVIKVDDGNVLLGDVEMADTRINRAYSNNKGVEPSVHVTNVRGLKTLFDITASVKTTDVRHGKLEKAMLYYEVFDKNLEDVAKVCSYSEIPNVTVAG  10190

Range 2: 9861 to 10190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 79/110(72%) 0/110(0%) Plus/Minus
Query        4  SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IFKFFMSNVRRCD*SCYFEQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFISG*  333
                SGNR+VRYFRI T F YVF*IFIKYFIV+H  FKF +SN+R  D SCY EQ   TSHV NVHG LDPFIV*+ S+ S   H DI+** ITVVDL +RFCIQPFDSFISG*
Subject   9861  SGNRNVRYFRITTHFRYVF*IFIKYFIVKHCFFKFSVSNIRCLDRSCYIEQSFQTSHVRNVHGRLDPFIV*VRSVYSCIRHFDIA**DITVVDLNYRFCIQPFDSFISG*  10190

Range 3: 9573 to 9812 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 57/80(71%) 0/80(0%) Plus/Minus
Query      382  LVSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI  621
                LVSEPQRP+FQSIP ARH+DS+ *S RY  FL*K + NLNV VI+ I+RYLS GH FIVI+  TIVNK P*L AMTTPE+
Subject   9573  LVSEPQRPVFQSIPYARHVDSVY*SGRYDSFL*KSQTNLNVYVIQQIARYLSRGHLFIVIVRTTIVNKRP*LSAMTTPEV  9812

Range 4: 9593 to 10102 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.8 bits(576) 0.0 136/170(80%) 0/170(0%) Plus/Minus
Query       92  IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA  601
                I FS+F CLTSVV+TEAVISNKVF+PLTF+TCTEGSTPLLFEY L  R+ AISTS S T PSST I  SVYSPSIRLFLVD+STR*  SSS+T*NIISCPNRSDPF R YP HG SIP TEAAVTT FFER+RLIS ST*SN SLDISVGVI SL** E P**TKGRN A
Subject   9593  IAFSSFPCLTSVVLTEAVISNKVFKPLTFVTCTEGSTPLLFEYALFIRVSAISTSPSKTLPSSTLITASVYSPSIRLFLVDLSTR*RNSSSLT*NIISCPNRSDPFSRVYPMHGTSIPFTEAAVTTLFFERVRLISTST*SNRSLDISVGVICSL***EPP**TKGRNLA  10102

Range 5: 10139 to 10192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 14/18(78%) 0/18(0%) Plus/Minus
Query        2  DPATVAFGISE*LQAFAT  55
                +PATV FGISE*L  FAT
Subject  10139  NPATVTFGISE*LHTFAT  10192

Range 6: 9859 to 10191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 79/111(71%) 0/111(0%) Minus/Plus
Query        3  HQPEINESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD  335
                +QPEINESKGCIQ    RSTTVM Y* MS+W++ +* E  QTIKGSS PCTL T*EV + CS *QL S++R LD +NLK QC TMKYLIKI*KT*+K V IRKYRTLRLPD
Subject   9859  NQPEINESKGCIQKR*LRSTTVMSY*AMSKWRIHE*TERTQTIKGSSLPCTLRT*EV*KLCSI*QLLSRQRMLDTENLKKQCFTMKYLIKI*KT*RKCVVIRKYRTLRLPD  10191

Range 7: 9577 to 9813 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 56/79(71%) 0/79(0%) Minus/Plus
Query      381  SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR  617
                SGVVMA SYG LFTMV+  ITMN+*P+LRYR I  IT TLRL+ +FQRK  *R LQ  ES CRA*G+L K GRCGSDTR
Subject   9577  SGVVMALSYGLLFTMVVLTITMNK*PRLRYRAICWIT*TLRLV*LFQRKES*RPLQ*TESTCRA*GILWKTGRCGSDTR  9813

Range 8: 9574 to 9801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 51/76(67%) 0/76(0%) Plus/Minus
Query      393  TAATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN  620
                TAAT F E+TL TA RF  LK PL  FSLK+ D*SQ  RN    SISQ GSFVHCN+ N+HSKQ+AVT RHDYPR+
Subject   9574  TAATRFPEYTLCTARRFRLLKRPLRLFSLKESD*SQRLRNPTDRSISQSGSFVHCNSKNHHSKQKAVT*RHDYPRS  9801

Range 9: 10069 to 10191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 33/41(80%) 0/41(0%) Plus/Minus
Query        3  IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQIFHV*RP  125
                IRQP*RSVFPN+Y L LRLLDFYQILHS+AL FQ+F V* P
Subject  10069  IRQP*RSVFPNNYTLSLRLLDFYQILHSKALLFQVFRV*HP  10191

Range 10: 9841 to 9900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 17/20(85%) 0/20(0%) Plus/Minus
Query      294  ILYTALRFVYFWLMYLLDNV  353
                +LYTALRFVYFWL+Y LDNV
Subject   9841  LLYTALRFVYFWLIYPLDNV  9900

Range 11: 9578 to 9898 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 82/107(77%) 0/107(0%) Minus/Plus
Query      296  RG*SWREVTAXXXXXXXXXXX*TNDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVYR  616
                RG*SWR VTA CLLW F+LLQ*TNDP+*DIER + LR  *D*S SFKEK  NG FS  NR AV RV S K VAAVRTRDYISR *RR TLSS  INQK*TNRRAVYR
Subject   9578  RG*SWR*VTAFCLLWWFLLLQ*TNDPD*DIERSVGLRRR*D*SDSFKEKSRNGRFSKRNRRAVHRVYSGKRVAAVRTRDYISR**RRITLSSG*INQK*TNRRAVYR  9898

Range 12: 10034 to 10120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 18/29(62%) 0/29(0%) Minus/Plus
Query       74  DLVRNNSFSHNDGR*T*KI*KFNALL*SI  160
                + VR NSF  ++G *T K *K NALL*SI
Subject  10034  NFVRYNSFCQDNGC*TRKT*KSNALL*SI  10120

Range 13: 10160 to 10192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 11/11(100%) 0/11(0%) Minus/Plus
Query        2  FGNTERYGCRI  34
                FGNTERYGCRI
Subject  10160  FGNTERYGCRI  10192

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 11

Range 1: 15702 to 16343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
363.5 bits(787) 0.0 150/214(70%) 0/214(0%) Minus/Plus
Query        4  QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG  645
                +NVL +   FGG+HGAKLRPFVYYG SYYYNE+M PT+IS D+ DYV++EI+L LSKK VVTAA +NGID+PCLGYALKNG+LRFGHEIIF V DD LHYL+D STRNKRIEGLYTE  +KVD GDVLL DV+MAG  L+R YSN  G+EPS+HV NV  WK+LF ++AS T T V     EN+MLYYEV D+NLEDVAK C Y EIP ATVAG
Subject  15702  KNVLELGVDFGGTHGAKLRPFVYYGGSYYYNEQMVPTDISEDVLDYVNVEISLTLSKKRVVTAALINGIDVPCLGYALKNGTLRFGHEIIFKVDDDSLHYLLDKSTRNKRIEGLYTELVVKVDGGDVLLGDVDMAGTPLDRAYSNKTGIEPSIHVANVGDWKSLFVLSASDTRTGVEQPYTENAMLYYEVVDRNLEDVAKTCGYFEIPTATVAG  16343

Range 2: 15746 to 16255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 114/170(67%) 0/170(0%) Plus/Minus
Query       92  IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA  601
                I FS   C T V+V+EA  +NK+FQ  TF TC EGS P+LFEY LS+ +PAISTS + TSP ST   +SVY+PSIRLFLVD+S R*CK SS T  IISCPNRS PFF+A PRHG SIP  +AAVTT FFER++LIS  T*SN S DISVG I SL**YE P**TKGR+ A
Subject  15746  IAFSV*GCSTPVLVSEADKTNKLFQSPTFATCIEGSIPVLFEYALSSGVPAISTSPNKTSPPSTLTTNSVYNPSIRLFLVDLSNR*CKLSSSTLKIISCPNRSVPFFKA*PRHGTSIPFIKAAVTTLFFERVKLISTFT*SNTSSDISVGTICSL**YEPP**TKGRSLA  16255

Range 3: 16243 to 16344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/34(62%) 0/34(0%) Plus/Minus
Query        3  IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQ  104
                I+Q *RSVF NS    LRLL+FY++LHS+AL+F+
Subject  16243  IQQQ*RSVFQNSRTFSLRLLNFYRLLHSKALHFR  16344

Range 4: 15726 to 15962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 44/79(56%) 0/79(0%) Plus/Minus
Query      385  VSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI  621
                VSE QR +FQ + *ARH+DS+ *S RY  FL*+ + +LNV++I+YI RY+SW H  I+II* T+VNKG *   M+ PE+
Subject  15726  VSESQRSVFQGVT*ARHVDSVY*SSRYDSFL*ESQTDLNVHIIQYIFRYISWNHLLIIII*TTVVNKGS*FSTMSAPEV  15962

Range 5: 16023 to 16196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 31/58(53%) 0/58(0%) Plus/Minus
Query      151  EQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFI  324
                +Q  P SHV NV+  LDP  V*+ S+*  TCH+++S * +T +DL   F IQPFDSFI
Subject  16023  KQAFPVSHVRNVYRRLDPRFV*VRSV*WRTCHINVSQ*NVTAIDLND*FSIQPFDSFI  16196

Range 6: 16245 to 16343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query        4  SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IF  102
                S N S RYF+IA  F YVF*I I YFIV+H IF
Subject  16245  SSNSSGRYFKIAARFRYVF*ISIDYFIVKHCIF  16343

Range 7: 16024 to 16344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 53/107(50%) 0/107(0%) Minus/Plus
Query        3  INESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD  323
                INESKGCI N   RS  V +Y E   WQV  * E  QT +GSS   TL T E G+ C   QL ++ +  +    K+QC TMK  I+I*KT*+K  AI KYR L L D
Subject  16024  INESKGCILN*SLRSMAVTFYWETLIWQVRH*TERTQTKRGSSLLYTLRTWETGKACLFYQLLTRGQASNNPIPKMQCFTMK*SIEI*KT*RKRAAILKYRPLLLLD  16344

Range 8: 15730 to 15966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 41/79(52%) 0/79(0%) Minus/Plus
Query      381  SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR  617
                SG +M  +Y PLFT V+HII M++  QL YR++Y I  TLR + + QRK  *R L   ES CRA*   *K  RC SDT+
Subject  15730  SGALMVLNYDPLFTTVVHIIIMSKWFQLIYRKMYWIM*TLRSV*LSQRKES*RLL**TESTCRA*VTP*KTERCDSDTK  15966

Range 9: 15727 to 15951 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 40/75(53%) 0/75(0%) Plus/Minus
Query      396  AATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN  620
                AA  FS   LGTA RF  LK PL  FSL++ +*SQ   N I+L I QL  F H NNMN+ SKQR V   H+ PR+
Subject  15727  AAFRFSRRNLGTARRFRLLKQPLRLFSLRESN*SQRSHNPIHLPIYQLEPFAHYNNMNHRSKQRVVV*HHECPRS  15951

Range 10: 15991 to 16053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/21(67%) 0/21(0%) Plus/Minus
Query      294  ILYTALRFVYFWLMYLLDNVN  356
                I YT LRFVY   +YL+DNVN
Subject  15991  IQYTTLRFVYS*SIYLIDNVN  16053

Range 11: 15800 to 16048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 45/83(54%) 0/83(0%) Minus/Plus
Query      299  NDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY  547
                N  N* I R I L   *D   S KEK  NG F+  NR AVPR+  EK  AA+RTR+Y    *R+FTLS R I+ +*TNRR VY
Subject  15800  NGSN*YIGRCIGLCER*DQFDSLKEKSRNGCFNKRNRRAVPRLRLEKRNAAIRTRNYF*S**RQFTLSIR*ID*E*TNRRVVY  16048

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 11

Range 1: 15702 to 16343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
363.5 bits(787) 0.0 150/214(70%) 0/214(0%) Minus/Plus
Query        4  QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG  645
                +NVL +   FGG+HGAKLRPFVYYG SYYYNE+M PT+IS D+ DYV++EI+L LSKK VVTAA +NGID+PCLGYALKNG+LRFGHEIIF V DD LHYL+D STRNKRIEGLYTE  +KVD GDVLL DV+MAG  L+R YSN  G+EPS+HV NV  WK+LF ++AS T T V     EN+MLYYEV D+NLEDVAK C Y EIP ATVAG
Subject  15702  KNVLELGVDFGGTHGAKLRPFVYYGGSYYYNEQMVPTDISEDVLDYVNVEISLTLSKKRVVTAALINGIDVPCLGYALKNGTLRFGHEIIFKVDDDSLHYLLDKSTRNKRIEGLYTELVVKVDGGDVLLGDVDMAGTPLDRAYSNKTGIEPSIHVANVGDWKSLFVLSASDTRTGVEQPYTENAMLYYEVVDRNLEDVAKTCGYFEIPTATVAG  16343

Range 2: 15746 to 16255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 114/170(67%) 0/170(0%) Plus/Minus
Query       92  IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA  601
                I FS   C T V+V+EA  +NK+FQ  TF TC EGS P+LFEY LS+ +PAISTS + TSP ST   +SVY+PSIRLFLVD+S R*CK SS T  IISCPNRS PFF+A PRHG SIP  +AAVTT FFER++LIS  T*SN S DISVG I SL**YE P**TKGR+ A
Subject  15746  IAFSV*GCSTPVLVSEADKTNKLFQSPTFATCIEGSIPVLFEYALSSGVPAISTSPNKTSPPSTLTTNSVYNPSIRLFLVDLSNR*CKLSSSTLKIISCPNRSVPFFKA*PRHGTSIPFIKAAVTTLFFERVKLISTFT*SNTSSDISVGTICSL**YEPP**TKGRSLA  16255

Range 3: 16243 to 16344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/34(62%) 0/34(0%) Plus/Minus
Query        3  IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQ  104
                I+Q *RSVF NS    LRLL+FY++LHS+AL+F+
Subject  16243  IQQQ*RSVFQNSRTFSLRLLNFYRLLHSKALHFR  16344

Range 4: 15726 to 15962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 44/79(56%) 0/79(0%) Plus/Minus
Query      385  VSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI  621
                VSE QR +FQ + *ARH+DS+ *S RY  FL*+ + +LNV++I+YI RY+SW H  I+II* T+VNKG *   M+ PE+
Subject  15726  VSESQRSVFQGVT*ARHVDSVY*SSRYDSFL*ESQTDLNVHIIQYIFRYISWNHLLIIII*TTVVNKGS*FSTMSAPEV  15962

Range 5: 16023 to 16196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 31/58(53%) 0/58(0%) Plus/Minus
Query      151  EQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFI  324
                +Q  P SHV NV+  LDP  V*+ S+*  TCH+++S * +T +DL   F IQPFDSFI
Subject  16023  KQAFPVSHVRNVYRRLDPRFV*VRSV*WRTCHINVSQ*NVTAIDLND*FSIQPFDSFI  16196

Range 6: 16245 to 16343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query        4  SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IF  102
                S N S RYF+IA  F YVF*I I YFIV+H IF
Subject  16245  SSNSSGRYFKIAARFRYVF*ISIDYFIVKHCIF  16343

Range 7: 16024 to 16344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 53/107(50%) 0/107(0%) Minus/Plus
Query        3  INESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD  323
                INESKGCI N   RS  V +Y E   WQV  * E  QT +GSS   TL T E G+ C   QL ++ +  +    K+QC TMK  I+I*KT*+K  AI KYR L L D
Subject  16024  INESKGCILN*SLRSMAVTFYWETLIWQVRH*TERTQTKRGSSLLYTLRTWETGKACLFYQLLTRGQASNNPIPKMQCFTMK*SIEI*KT*RKRAAILKYRPLLLLD  16344

Range 8: 15730 to 15966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 41/79(52%) 0/79(0%) Minus/Plus
Query      381  SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR  617
                SG +M  +Y PLFT V+HII M++  QL YR++Y I  TLR + + QRK  *R L   ES CRA*   *K  RC SDT+
Subject  15730  SGALMVLNYDPLFTTVVHIIIMSKWFQLIYRKMYWIM*TLRSV*LSQRKES*RLL**TESTCRA*VTP*KTERCDSDTK  15966

Range 9: 15727 to 15951 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 40/75(53%) 0/75(0%) Plus/Minus
Query      396  AATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN  620
                AA  FS   LGTA RF  LK PL  FSL++ +*SQ   N I+L I QL  F H NNMN+ SKQR V   H+ PR+
Subject  15727  AAFRFSRRNLGTARRFRLLKQPLRLFSLRESN*SQRSHNPIHLPIYQLEPFAHYNNMNHRSKQRVVV*HHECPRS  15951

Range 10: 15991 to 16053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/21(67%) 0/21(0%) Plus/Minus
Query      294  ILYTALRFVYFWLMYLLDNVN  356
                I YT LRFVY   +YL+DNVN
Subject  15991  IQYTTLRFVYS*SIYLIDNVN  16053

Range 11: 15800 to 16048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 45/83(54%) 0/83(0%) Minus/Plus
Query      299  NDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY  547
                N  N* I R I L   *D   S KEK  NG F+  NR AVPR+  EK  AA+RTR+Y    *R+FTLS R I+ +*TNRR VY
Subject  15800  NGSN*YIGRCIGLCER*DQFDSLKEKSRNGCFNKRNRRAVPRLRLEKRNAAIRTRNYF*S**RQFTLSIR*ID*E*TNRRVVY  16048

Nucleotide Sequence (326 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
326

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 8

Range 1: 5027 to 5341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.9 bits(399) 0.0 86/105(82%) 0/105(0%) Minus/Plus
Query        4  RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE  318
                RC VDKGKKVVDYDEELNMRKEK RL +EKRRE HGGL PVVFKEPKCE +DDDSDEE+E YLCLSS+K ERG+A+PSGCKSADGK + EESPERK +SSAIIKE
Subject   5027  RCTVDKGKKVVDYDEELNMRKEKCRLDLEKRREGHGGLNPVVFKEPKCEGKDDDSDEENESYLCLSSTKAERGDASPSGCKSADGKSVPEESPERKMKSSAIIKE  5341

Range 2: 5022 to 5342 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 85/107(79%) 0/107(0%) Plus/Minus
Query        3  LL**SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRVXXXXXXXXXXXXXXXLRRNQRPSSLYRRCTST  323
                LL**SLTI SFSP FPP+++FHQRTYNHWA   HVPLW SLSTDS RSLHPN HP+ HTSVL*TQQ+LGHHAL VS P  AC SPSAYS LRRNQRPSSLYR+ TST
Subject   5022  LL**SLTISSFSPDFPPVHSFHQRTYNHWAKRRHVPLWWSLSTDSFRSLHPNRHPSPHTSVL*TQQDLGHHALHVSFPNPACTSPSAYSILRRNQRPSSLYRQYTST  5342

Range 3: 5028 to 5291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 71/88(81%) 0/88(0%) Minus/Plus
Query       54  GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY  317
                G  SIKGRRSLITTK+*ICGRRSAG +W+RD K MVA* LLCLKNRSV GRM IRMKR KAICA*A PK NV  LRPVVVSPLME VY
Subject   5028  GVLSIKGRRSLITTKN*ICGRRSAGWIWKRDVKGMVA*ILLCLKNRSVRGRMTIRMKRTKAICA*APPKRNVATLRPVVVSPLMERVY  5291

Range 4: 5021 to 5179 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 43/53(81%) 0/53(0%) Plus/Minus
Query      166  LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL  324
                LPLTLRFFKHNR *ATM F SL   QPALLLPHIQ FVVINDLLPFID  P+L
Subject   5021  LPLTLRFFKHNRI*ATMPFTSLFQIQPALLLPHIQFFVVINDLLPFIDSTPRL  5179

Range 5: 5209 to 5343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 35/45(78%) 0/45(0%) Plus/Minus
Query        2  SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*  136
                +SL+IADD +FLSGLSS   FPSADLQPLG ASPRS L ELKHR*
Subject   5209  ASLMIADDFIFLSGLSSGTLFPSADLQPLGEASPRSALVELKHR*  5343

Range 6: 5080 to 5340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.5 bits(320) 0.0 66/87(76%) 0/87(0%) Minus/Plus
Query        5  YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR  265
                YAEGE QA +G+ET RAWWP SCCV*RTEV*  G* FG*RER+LSVLKL QSGTW  +AQWL*VR*WK   GGK GEKD IVSD+ R
Subject   5080  YAEGEVQAGFGKET*RAWWPKSCCV*RTEV*GEG*RFG*RERKLSVLKLHQSGTWRRFAQWL*VR*WKECTGGKSGEKDEIVSDH*R  5340

Range 7: 5110 to 5157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 14/16(88%) 0/16(0%) Plus/Minus
Query      188  LNTTGIRPPCSSRLFS  235
                LNTTG RPPC SRLFS
Subject   5110  LNTTGFRPPCPSRLFS  5157

Range 8: 5240 to 5290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 15/17(88%) 0/17(0%) Plus/Minus
Query       55  YTLSISGLTTTGRSFTT  105
                YTLSISGLTTTGRS  T
Subject   5240  YTLSISGLTTTGRSVAT  5290

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8

Range 1: 4962 to 5276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.3 bits(391) 0.0 86/105(82%) 0/105(0%) Minus/Plus
Query        4  RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE  318
                RC VDKGKKVVDYDEELNMRKEK RL +EKRRE HGGLIPVVFKEPKCE +DDDSDEESE YLCLSS K ERG+A+PSGCKSADGK +SE+S ERK +SSAIIK+
Subject   4962  RCTVDKGKKVVDYDEELNMRKEKCRLDLEKRREGHGGLIPVVFKEPKCEGKDDDSDEESEDYLCLSSIKAERGDASPSGCKSADGKSVSEDSLERKMKSSAIIKD  5276

Range 2: 4957 to 5274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 83/106(78%) 0/106(0%) Plus/Minus
Query        6  L**SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRVXXXXXXXXXXXXXXXLRRNQRPSSLYRRCTST  323
                L**SLTI SFSPG+PPI++FHQRTYNHWA   HVPL  SLSTDSLRSL PN HP+ HTSVL*TQ+ELGHHAL VS P  AC SPSAYSTLRR+QRPSSLY++ TST
Subject   4957  L**SLTISSFSPGYPPIHSFHQRTYNHWAKRRHVPL*WSLSTDSLRSLRPNRHPSPHTSVL*TQRELGHHALHVSFPNPACTSPSAYSTLRRSQRPSSLYQQYTST  5274

Range 3: 4956 to 5114 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 42/53(79%) 0/53(0%) Plus/Minus
Query      166  LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL  324
                LPLTLRFFKHN N*ATM F SL   QPALLLPHIQLFVV+NDLLPFI+  P+L
Subject   4956  LPLTLRFFKHNGN*ATMPFTSLFQIQPALLLPHIQLFVVVNDLLPFINSTPRL  5114

Range 4: 5144 to 5278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 35/45(78%) 0/45(0%) Plus/Minus
Query        2  SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*  136
                +SL+IADD +FLS LSSD  FPSADLQPLG ASPRS L ELKHR*
Subject   5144  ASLMIADDFIFLSRLSSDTLFPSADLQPLGEASPRSALMELKHR*  5278

Range 5: 4963 to 5226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 68/88(77%) 0/88(0%) Minus/Plus
Query       54  GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY  317
                G   IKGRRSL TTKS*ICGRRSAG +W+RD K MVA*F LCLKNRSV GRM IR KRAK ICA*A  K NV  LRPVVVSPLME VY
Subject   4963  GVLLIKGRRSLTTTKS*ICGRRSAGWIWKRDVKGMVA*FPLCLKNRSVRGRMTIRTKRAKTICA*APSKRNVATLRPVVVSPLMERVY  5226

Range 6: 5015 to 5275 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 67/87(77%) 0/87(0%) Minus/Plus
Query        5  YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR  265
                YAEGE QA +G+ET RAWWPNS CV*RTEV*  G* FG RERRLSVLKL QSGTW  +AQWL*VR*WK  IGG PGEKD IVSD+ R
Subject   5015  YAEGEVQAGFGKET*RAWWPNSRCV*RTEV*GEG*RFGRRERRLSVLKLHQSGTWRRFAQWL*VR*WKECIGG*PGEKDEIVSDH*R  5275

Range 7: 5045 to 5092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 15/16(94%) 0/16(0%) Plus/Minus
Query      188  LNTTGIRPPCSSRLFS  235
                LNTTGIRPPC SRLFS
Subject   5045  LNTTGIRPPCPSRLFS  5092

Range 8: 5175 to 5225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 15/17(88%) 0/17(0%) Plus/Minus
Query       55  YTLSISGLTTTGRSFTT  105
                YTLSISGLTTTGRS  T
Subject   5175  YTLSISGLTTTGRSVAT  5225

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 9

Range 1: 4886 to 5200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.4 bits(409) 0.0 89/105(85%) 0/105(0%) Minus/Plus
Query        4  RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE  318
                R IVDKGKKVVDYDEELNMRKEK RL +EKRREEHGGLIPVVFKEPKCE +DD+S+EESEGYLCLSS+KVERG+A+PSGCKSAD K ISEESPERKT+SSAII++
Subject   4886  RRIVDKGKKVVDYDEELNMRKEKCRLIIEKRREEHGGLIPVVFKEPKCEGKDDESEEESEGYLCLSSTKVERGDASPSGCKSADCKSISEESPERKTKSSAIIED  5200

Range 2: 4880 to 5038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 47/53(89%) 0/53(0%) Plus/Minus
Query      166  LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL  324
                LPLTLRFFKHNRN*ATMLF+SLL+ QPALLLPHIQLFVVINDLLPFID+ P+L
Subject   4880  LPLTLRFFKHNRN*ATMLFSSLLYNQPALLLPHIQLFVVINDLLPFIDNTPRL  5038

Range 3: 5065 to 5202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 38/46(83%) 0/46(0%) Plus/Minus
Query        2  SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*P  139
                +S IIADD VFLSGLSSDI   SADLQPLG ASPRSTL ELKHR*P
Subject   5065  TSSIIADDFVFLSGLSSDILLQSADLQPLGEASPRSTLVELKHR*P  5202

Range 4: 4939 to 5199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 67/87(77%) 0/87(0%) Minus/Plus
Query        5  YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR  265
                YAEGE Q  Y EETRRAWWPNSCCV*RTEV*  G   G RERRLSVLKL QSG W  +AQWL*VR* + YIGGKPGEKD IVSDY+R
Subject   4939  YAEGEVQVDYREETRRAWWPNSCCV*RTEV*GEGRRIGRRERRLSVLKLYQSGAWRRFAQWL*VR*LQEYIGGKPGEKDEIVSDYRR  5199

Range 5: 4887 to 5150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 71/88(81%) 0/88(0%) Minus/Plus
Query       54  GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY  317
                G  SIKGRRSLITTKS*ICGRRSAG L RRD KSMVA*FLLCLKNRSV GR   R KRAKAICA*A PKW+V  LRPVVVSPL+  VY
Subject   4887  GVLSIKGRRSLITTKS*ICGRRSAG*L*RRDEKSMVA*FLLCLKNRSVRGRTTNRKKRAKAICA*ALPKWSVATLRPVVVSPLIARVY  5150

Range 6: 4977 to 5192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 56/72(78%) 0/72(0%) Plus/Minus
Query       12  *SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRV  227
                *SLTI SFSPGFPPIY+ +QRTYNHWA   H PLW SLSTDSLRSL P   P+ HTSVL*TQQELGHHAL V
Subject   4977  *SLTISSFSPGFPPIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRSLLPIRRPSPHTSVL*TQQELGHHALLV  5192

Range 7: 4884 to 4931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 13/16(81%) 0/16(0%) Plus/Minus
Query      273  LRRNQRPSSLYRRCTS  320
                LRRNQRPSSLYR+  S
Subject   4884  LRRNQRPSSLYRQYAS  4931

Range 8: 4966 to 5016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/17(100%) 0/17(0%) Plus/Minus
Query      188  LNTTGIRPPCSSRLFSI  238
                LNTTGIRPPCSSRLFSI
Subject   4966  LNTTGIRPPCSSRLFSI  5016

Range 9: 5099 to 5149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 14/17(82%) 0/17(0%) Plus/Minus
Query       55  YTLSISGLTTTGRSFTT  105
                YTL+ISGLTTTGRS  T
Subject   5099  YTLAISGLTTTGRSVAT  5149

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 9

Range 1: 4886 to 5200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.4 bits(409) 0.0 89/105(85%) 0/105(0%) Minus/Plus
Query        4  RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE  318
                R IVDKGKKVVDYDEELNMRKEK RL +EKRREEHGGLIPVVFKEPKCE +DD+S+EESEGYLCLSS+KVERG+A+PSGCKSAD K ISEESPERKT+SSAII++
Subject   4886  RRIVDKGKKVVDYDEELNMRKEKCRLIIEKRREEHGGLIPVVFKEPKCEGKDDESEEESEGYLCLSSTKVERGDASPSGCKSADCKSISEESPERKTKSSAIIED  5200

Range 2: 4880 to 5038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 47/53(89%) 0/53(0%) Plus/Minus
Query      166  LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL  324
                LPLTLRFFKHNRN*ATMLF+SLL+ QPALLLPHIQLFVVINDLLPFID+ P+L
Subject   4880  LPLTLRFFKHNRN*ATMLFSSLLYNQPALLLPHIQLFVVINDLLPFIDNTPRL  5038

Range 3: 5065 to 5202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 38/46(83%) 0/46(0%) Plus/Minus
Query        2  SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*P  139
                +S IIADD VFLSGLSSDI   SADLQPLG ASPRSTL ELKHR*P
Subject   5065  TSSIIADDFVFLSGLSSDILLQSADLQPLGEASPRSTLVELKHR*P  5202

Range 4: 4939 to 5199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 67/87(77%) 0/87(0%) Minus/Plus
Query        5  YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR  265
                YAEGE Q  Y EETRRAWWPNSCCV*RTEV*  G   G RERRLSVLKL QSG W  +AQWL*VR* + YIGGKPGEKD IVSDY+R
Subject   4939  YAEGEVQVDYREETRRAWWPNSCCV*RTEV*GEGRRIGRRERRLSVLKLYQSGAWRRFAQWL*VR*LQEYIGGKPGEKDEIVSDYRR  5199

Range 5: 4887 to 5150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 71/88(81%) 0/88(0%) Minus/Plus
Query       54  GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY  317
                G  SIKGRRSLITTKS*ICGRRSAG L RRD KSMVA*FLLCLKNRSV GR   R KRAKAICA*A PKW+V  LRPVVVSPL+  VY
Subject   4887  GVLSIKGRRSLITTKS*ICGRRSAG*L*RRDEKSMVA*FLLCLKNRSVRGRTTNRKKRAKAICA*ALPKWSVATLRPVVVSPLIARVY  5150

Range 6: 4977 to 5192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 56/72(78%) 0/72(0%) Plus/Minus
Query       12  *SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRV  227
                *SLTI SFSPGFPPIY+ +QRTYNHWA   H PLW SLSTDSLRSL P   P+ HTSVL*TQQELGHHAL V
Subject   4977  *SLTISSFSPGFPPIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRSLLPIRRPSPHTSVL*TQQELGHHALLV  5192

Range 7: 4884 to 4931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 13/16(81%) 0/16(0%) Plus/Minus
Query      273  LRRNQRPSSLYRRCTS  320
                LRRNQRPSSLYR+  S
Subject   4884  LRRNQRPSSLYRQYAS  4931

Range 8: 4966 to 5016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/17(100%) 0/17(0%) Plus/Minus
Query      188  LNTTGIRPPCSSRLFSI  238
                LNTTGIRPPCSSRLFSI
Subject   4966  LNTTGIRPPCSSRLFSI  5016

Range 9: 5099 to 5149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 14/17(82%) 0/17(0%) Plus/Minus
Query       55  YTLSISGLTTTGRSFTT  105
                YTL+ISGLTTTGRS  T
Subject   5099  YTLAISGLTTTGRSVAT  5149

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 13

Range 1: 1170 to 1307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.7 bits(218) 0.0 42/46(91%) 0/46(0%) Minus/Plus
Query      172  VDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCE  309
                VDKGKKVVDYDEE NMRKEKRR  MEKRRE HGGLIPVVFKEPKCE
Subject   1170  VDKGKKVVDYDEESNMRKEKRRXXMEKRREVHGGLIPVVFKEPKCE  1307

Range 2: 1325 to 1414 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 25/30(83%) 0/30(0%) Minus/Plus
Query        5  YAQWL*VR*WKVYIGGKPGEKDGIVSDYQR  94
                +AQWL*VR*WK YI GKPGEKD IVSDY+R
Subject   1325  FAQWL*VR*WKEYIRGKPGEKDEIVSDYRR  1414

Range 3: 1155 to 1310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 41/52(79%) 0/52(0%) Plus/Minus
Query      169  PLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL  324
                PLTLR FKHNRN*ATM F+SLLH  PALLLPH++LFVVIND LPFID  P+L
Subject   1155  PLTLRLFKHNRN*ATMHFSSLLHXXPALLLPHVRLFVVINDFLPFIDXXPRL  1310

Range 4: 1327 to 1407 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 24/27(89%) 0/27(0%) Plus/Minus
Query       12  *SLTIPSFSPGFPPIYTFHQRTYNHWA  92
                *SLTI SFSPGFP IY+FHQRTYNHWA
Subject   1327  *SLTISSFSPGFPLIYSFHQRTYNHWA  1407

Range 5: 1162 to 1311 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 39/50(78%) 0/50(0%) Minus/Plus
Query      168  GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSG  317
                G  SIKGR+SLITTKS  CGRRSAG  WRRD K MVA*FLLCLK+RSV G
Subject   1162  GXXSIKGRKSLITTKSRTCGRRSAGXXWRRDEKCMVA*FLLCLKSRSVRG  1311

Range 6: 1323 to 1415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.9 bits(127) 0.0 25/31(81%) 0/31(0%) Minus/Plus
Query        4  ATPSGCKSADGKCISEESPERKTESSAIIKE  96
                A+PSGCKSADGK ISEESPERKT+ SAII++
Subject   1323  ASPSGCKSADGKSISEESPERKTKLSAIIED  1415

Range 7: 1322 to 1417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 26/32(81%) 0/32(0%) Plus/Minus
Query        2  SSLIIADDSVFLSGLSSDIHFPSADLQPLGVA  97
                +S IIAD+ VFLSGLSSDI FPSADLQPLG A
Subject   1322  TSSIIADNFVFLSGLSSDILFPSADLQPLGEA  1417

Range 8: 1252 to 1314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 17/21(81%) 0/21(0%) Plus/Minus
Query      165  PAAHTSVL*TQQELGHHALRV  227
                P+ HTS L*TQQELGHHAL V
Subject   1252  PSPHTSAL*TQQELGHHALLV  1314

Range 9: 1156 to 1206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 14/17(82%) 0/17(0%) Plus/Minus
Query      273  LRRNQRPSSLYRRCTST  323
                LRRNQR SSLYR  TST
Subject   1156  LRRNQRLSSLYRXXTST  1206

Range 10: 1214 to 1315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 26/34(76%) 0/34(0%) Minus/Plus
Query      164  YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG  265
                +AEGEAQ   GEETR AWWPNSCCV*R EV*  G
Subject   1214  HAEGEAQVXXGEETRSAWWPNSCCV*RAEV*GDG  1315

Range 11: 1324 to 1365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 13/14(93%) 0/14(0%) Minus/Plus
Query       54  LRPVVVSPLMESVY  95
                LRPVVVSPLME VY
Subject   1324  LRPVVVSPLMERVY  1365

Range 12: 1244 to 1291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 15/16(94%) 0/16(0%) Plus/Minus
Query      188  LNTTGIRPPCSSRLFS  235
                LNTTGIRPPC+SRLFS
Subject   1244  LNTTGIRPPCTSRLFS  1291

Range 13: 1323 to 1364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/14(100%) 0/14(0%) Plus/Minus
Query       55  YTLSISGLTTTGRS  96
                YTLSISGLTTTGRS
Subject   1323  YTLSISGLTTTGRS  1364

Nucleotide Sequence (325 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
325

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
223.3 1133.6 27% 8.486e-57 82% KU674797.1
220.5 1110.2 27% 5.681e-56 80% KU674796.1
222.8 1151.9 27% 1.165e-56 82% KT000364.1
221.9 1121.2 27% 2.196e-56 80% JQ023131.1
221.9 1121.2 27% 2.196e-56 80% NC_016509.1

Alignments

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6

Range 1: 6512 to 6805 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(482) 0.0 95/98(97%) 0/98(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP  324
                + FHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP
Subject   6512  LVFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP  6805

Range 2: 6523 to 6804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 92/94(98%) 0/94(0%) Minus/Minus
Query       42  GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS  323
                GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+LTLFMYSPTKALLANLTHPRKFIAS
Subject   6523  GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSLTLFMYSPTKALLANLTHPRKFIAS  6804

Range 3: 6514 to 6804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.0 bits(441) 0.0 83/97(86%) 0/97(0%) Plus/Plus
Query       33  SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA  323
                SVS*CDEFAWM *+ *EGFGRRIHEEC+ VRGEFTTWWRQDNASR R+F KEEACEDC+SEHRK CGY*LGYSSQRR+EG  FG EDRELVDC*FSA
Subject   6514  SVS*CDEFAWMC*IG*EGFGRRIHEECKAVRGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKCCGY*LGYSSQRRKEGD*FGGEDRELVDC*FSA  6804

Range 4: 6518 to 6805 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.5 bits(429) 0.0 83/96(86%) 0/96(0%) Minus/Minus
Query       37  GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK  324
                GPRINNPRVRGLR+QI LLL FSGSNSRVNIRS SCVRC NLRTLLPS+I V+ETRCLASTRW*IHRGQP+TLHVF+DQSPLS  N STQIHRIMK
Subject   6518  GPRINNPRVRGLRHQISLLLSFSGSNSRVNIRSTSCVRCGNLRTLLPSKIFVDETRCLASTRW*IHRGQPYTLHVFADQSPLSQSNTSTQIHRIMK  6805

Range 5: 6492 to 6806 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 86/105(82%) 0/105(0%) Plus/Plus
Query       11  CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKGXXXXXXXXXXXXXGLLILGP  325
                C   ++ * FMMR*ICVD L  LRGLWS NT*RV*GCPR*IHHLVEARQRVS T+I EGRSVRRL QRTQE LRILTRLFEPEK RRR IW RRPRTRGLLILGP
Subject   6492  C*FVMIY*CFMMR*ICVDVLDWLRGLWSANT*RV*GCPR*IHHLVEARQRVSSTNILEGRSVRRLPQRTQEVLRILTRLFEPEKERRRLIWWRRPRTRGLLILGP  6806

Range 6: 6513 to 6716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 57/68(84%) 0/68(0%) Minus/Minus
Query       32  YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL  235
                YPQ FLCSL QSSHASSF+N R+RDALSCLHQVVNSPRT  HSSCI RPKPS*  * IHANSSHHETL
Subject   6513  YPQHFLCSLWQSSHASSFQNIRRRDALSCLHQVVNSPRTALHSSCIRRPKPS*PI*HIHANSSHHETL  6716

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6

Range 1: 6447 to 6740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(476) 0.0 93/98(95%) 0/98(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP  324
                + FHDAMNLRGCVRLAKRALVGEYMKSV+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADIN+AIRAREGKKE DLVAKTANSWIVNSRP
Subject   6447  LVFHDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINAAIRAREGKKETDLVAKTANSWIVNSRP  6740

Range 2: 6458 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.6 bits(451) 0.0 90/94(96%) 0/94(0%) Minus/Minus
Query       42  GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS  323
                GRELTIHEFAVFATKS SFFPSLARIA LISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+ TLFMYSPTKALLANLTHPRKFIAS
Subject   6458  GRELTIHEFAVFATKSVSFFPSLARIAALISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIAS  6739

Range 3: 6449 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
206.3 bits(444) 0.0 83/97(86%) 0/97(0%) Plus/Plus
Query       33  SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA  323
                SVS*CDEFAWM *+ *EGFGRRIHEECE +RGEFTTWWRQDNASR*R+F KEEACEDC+SEHRK C Y* GYSSQRR+EG RFG EDRELVDC*FSA
Subject   6449  SVS*CDEFAWMC*IG*EGFGRRIHEECEAIRGEFTTWWRQDNASR*RIFWKEEACEDCHSEHRKCCRY*RGYSSQRRKEGDRFGGEDRELVDC*FSA  6739

Range 4: 6453 to 6740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.7 bits(412) 0.0 82/96(85%) 0/96(0%) Minus/Minus
Query       37  GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK  324
                GPRINNPRVRGLR+QI LLL FSGSNSRVNI S SCVRC NLRTLLPS+I VNETRCLASTRW*IHRG  HTLHVF+DQSPLS  N STQIHRIMK
Subject   6453  GPRINNPRVRGLRHQIGLLLSFSGSNSRVNICSTSCVRCGNLRTLLPSKIFVNETRCLASTRW*IHRG*LHTLHVFADQSPLSQSNTSTQIHRIMK  6740

Range 5: 6427 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 84/105(80%) 0/105(0%) Plus/Plus
Query       11  CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKGXXXXXXXXXXXXXGLLILGP  325
                C   ++ * FMMR*ICVD L  LRGLWS NT*RV*  PR*IHHLVEARQRVSLT+I EGRSVRRL QRTQE L+ILTRLFEPEK RRR IW RRPRTRGLLILGP
Subject   6427  C*FVMIY*CFMMR*ICVDVLDWLRGLWSANT*RV*SYPR*IHHLVEARQRVSLTNILEGRSVRRLPQRTQEVLQILTRLFEPEKERRRPIWWRRPRTRGLLILGP  6741

Range 6: 6448 to 6651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 57/68(84%) 0/68(0%) Minus/Minus
Query       32  YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL  235
                Y Q FLCSL QSSHASSF+N RQRDALSCLHQVVNSPR  SHSSCI RPKPS*  * IHANSSHHETL
Subject   6448  YLQHFLCSLWQSSHASSFQNIRQRDALSCLHQVVNSPRIASHSSCIRRPKPS*PI*HIHANSSHHETL  6651

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6

Range 1: 2586 to 2879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.8 bits(481) 0.0 94/98(96%) 0/98(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP  324
                + FHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DL+AKTANSWIVNSRP
Subject   2586  LVFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLIAKTANSWIVNSRP  2879

Range 2: 2588 to 2878 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
213.7 bits(460) 0.0 88/97(91%) 0/97(0%) Plus/Plus
Query       33  SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA  323
                SVS*CDEFAWM *+  EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVF KEEACEDC+SEHRK CGY*LGYSSQRREEG RF SEDRELVDC*FSA
Subject   2588  SVS*CDEFAWMC*IGKEGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFWKEEACEDCHSEHRKCCGY*LGYSSQRREEGDRFDSEDRELVDC*FSA  2878

Range 3: 2597 to 2878 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.8 bits(456) 0.0 91/94(97%) 0/94(0%) Minus/Minus
Query       42  GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS  323
                GRELTIHEFAVFA KS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKAL ANLTHPRKFIAS
Subject   2597  GRELTIHEFAVFAIKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALFANLTHPRKFIAS  2878

Range 4: 2592 to 2879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.6 bits(451) 0.0 87/96(91%) 0/96(0%) Minus/Minus
Query       37  GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK  324
                GPRINNPRVRGLRYQI LLLPFSGSNSRVNIRS SCVRC NLRTLLPS+ILVNETRCLASTRW*IHRGQPHTLHVF+DQSPL   N STQIHRIMK
Subject   2592  GPRINNPRVRGLRYQIGLLLPFSGSNSRVNIRSTSCVRCGNLRTLLPSKILVNETRCLASTRW*IHRGQPHTLHVFADQSPLCQSNTSTQIHRIMK  2879

Range 5: 2566 to 2820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 70/85(82%) 0/85(0%) Plus/Plus
Query       11  CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG  265
                C   ++ * FMMR*ICVD L   RGLWS NT*RV*GCPR*IHHLVEARQRVSLTSI EGRSVRRL QRTQE LRILTRLFEPEKG
Subject   2566  C*FVMIY*CFMMR*ICVDVLDWQRGLWSANT*RV*GCPR*IHHLVEARQRVSLTSILEGRSVRRLPQRTQEVLRILTRLFEPEKG  2820

Range 6: 2587 to 2790 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 60/68(88%) 0/68(0%) Minus/Minus
Query       32  YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL  235
                YPQ FLCSL QSSHASSF+NTRQRDALSCLHQVVNSPRTTSHSSCI RPKPS   * IHANSSHHETL
Subject   2587  YPQHFLCSLWQSSHASSFQNTRQRDALSCLHQVVNSPRTTSHSSCIRRPKPSLPI*HIHANSSHHETL  2790

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 6371 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.9 bits(479) 0.0 94/98(96%) 0/98(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP  324
                + FHDAMNLRGCVRLAKRALVGEYMK+VRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP
Subject   6371  LVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP  6664

Range 2: 6382 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 91/94(97%) 0/94(0%) Minus/Minus
Query       42  GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS  323
                GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLT FMYSPT ALLANLTHPRKFIAS
Subject   6382  GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIAS  6663

Range 3: 6373 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.9 bits(443) 0.0 86/97(89%) 0/97(0%) Plus/Plus
Query       33  SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA  323
                SVS*CDEFAWM *V *EG GR IHEECEVVRGEFTTWWRQD+ASR*R+F KEEACEDCYSEH KRC Y*LGYSSQRREEG RFGSEDRELVDC*F A
Subject   6373  SVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*FPA  6663

Range 4: 6377 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 84/96(88%) 0/96(0%) Minus/Minus
Query       37  GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK  324
                GP INNPRVRGLRYQI LLLPFSGSNSRVNI SAS VRCSNLRTLLPS+I VNETR LASTRW*IHRGQPH LHVF+DQ PLS PN STQIHRIMK
Subject   6377  GPGINNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMK  6664

Range 5: 6351 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 68/85(80%) 0/85(0%) Plus/Plus
Query       11  CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG  265
                C   ++ * FMMR*ICVD LG LRG WS NT*R+*GCPR*IHHLVEAR+RVSLT+I EGRSVRRLLQRT EAL+ILTRLFEPEKG
Subject   6351  C*FVMIY*CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEKG  6605

Range 6: 6372 to 6575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 59/68(87%) 0/68(0%) Minus/Minus
Query       32  YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL  235
                Y QRF CSL*QSSHASSF+N RQRDA SCLHQVVNSPRTTSHSSCI RP PS* T* IHANSSHHETL
Subject   6372  YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL  6575

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6

Range 1: 6371 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.9 bits(479) 0.0 94/98(96%) 0/98(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP  324
                + FHDAMNLRGCVRLAKRALVGEYMK+VRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP
Subject   6371  LVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP  6664

Range 2: 6382 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 91/94(97%) 0/94(0%) Minus/Minus
Query       42  GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS  323
                GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLT FMYSPT ALLANLTHPRKFIAS
Subject   6382  GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIAS  6663

Range 3: 6373 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.9 bits(443) 0.0 86/97(89%) 0/97(0%) Plus/Plus
Query       33  SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA  323
                SVS*CDEFAWM *V *EG GR IHEECEVVRGEFTTWWRQD+ASR*R+F KEEACEDCYSEH KRC Y*LGYSSQRREEG RFGSEDRELVDC*F A
Subject   6373  SVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*FPA  6663

Range 4: 6377 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 84/96(88%) 0/96(0%) Minus/Minus
Query       37  GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK  324
                GP INNPRVRGLRYQI LLLPFSGSNSRVNI SAS VRCSNLRTLLPS+I VNETR LASTRW*IHRGQPH LHVF+DQ PLS PN STQIHRIMK
Subject   6377  GPGINNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMK  6664

Range 5: 6351 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 68/85(80%) 0/85(0%) Plus/Plus
Query       11  CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG  265
                C   ++ * FMMR*ICVD LG LRG WS NT*R+*GCPR*IHHLVEAR+RVSLT+I EGRSVRRLLQRT EAL+ILTRLFEPEKG
Subject   6351  C*FVMIY*CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEKG  6605

Range 6: 6372 to 6575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 59/68(87%) 0/68(0%) Minus/Minus
Query       32  YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL  235
                Y QRF CSL*QSSHASSF+N RQRDA SCLHQVVNSPRTTSHSSCI RP PS* T* IHANSSHHETL
Subject   6372  YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL  6575

Nucleotide Sequence (839 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
84
168
252
336
420
504
588
672
756
839

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
599.9 2055.7 28% 1.419e-169 49% JQ023131.1
599.9 2055.7 28% 1.419e-169 49% NC_016509.1
599.9 2095.1 28% 1.419e-169 46% KU674797.1
597.2 2077.2 28% 9.543e-169 46% KU674796.1
308.1 598.9 11% 1.038e-81 30% JQ655295.1

Alignments

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 10

Range 1: 2378 to 3187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
599.9 bits(1303) 0.0 253/270(94%) 0/270(0%) Minus/Plus
Query        1  VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  810
                +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV
Subject   2378  LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  3187

Range 2: 2566 to 3186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
401.5 bits(870) 0.0 177/207(86%) 0/207(0%) Plus/Minus
Query        2  T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM  622
                T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST  +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE  *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI +
Subject   2566  TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFI  3186

Range 3: 2374 to 2508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 32/45(71%) 0/45(0%) Plus/Minus
Query      680  MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH  814
                M PT AL S  RVSI QYV+FFAASF  TLSTVI  SSAV SL H
Subject   2374  MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLKH  2508

Range 4: 2396 to 3187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.9 bits(694) 0.0 136/264(52%) 0/264(0%) Plus/Minus
Query        1  YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL  792
                +V  LS+ D LYHQ Y+Q PL   RQFDL+++   ++ +MR LAPRA + VLK  IH+ R R+KQI VHTINE+ +*VHL E ++TIS LRYH QTMSLKR RH PR+I+RG+S + NA+RKLM+T+PV ++L+    A  *L  +TP++ Y+L + M +SIA+ ++S+ Y +  S +FH    YS A +S  Q  WKHQAQLEYF + LL  L QF+N+*V++V+HE+N   M+T  R+HL +RD+LR   L HAF+CH+  L
Subject   2396  HVCLLSVCDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARHGVLKCSIHECRRRIKQIRVHTINEIGI*VHLSE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKHAFDCHNLFL  3187

Range 5: 2499 to 3071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 100/191(52%) 0/191(0%) Minus/Plus
Query      117  LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM  689
                L SW T  T* F NW K  RR+  KYSSCA*CFQ +*+ E  A LY +  WK+ E+    C L    AML  I  +R *   GV  +SY  A   + S   TG V ISFL AL   L PR I RG+CR RLRDIVW *YRR LMV   S +CT*   SLIVCT ICL R    WI  LST   ARGA++RM
Subject   2499  LVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSDKCT*IPISLIVCTRICLIRRLHSWIEHLSTPCLARGARRRM  3071

Range 6: 2398 to 2511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 20/38(53%) 0/38(0%) Minus/Plus
Query      677  GESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG  790
                G+ YDS KR  ER  EE+HVL +G+A +*+*   W HG
Subject   2398  GKGYDSRKRA*ERGCEEHHVLPNGHALL*S*SASWFHG  2511

Range 7: 3102 to 3185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        3  RSNCLPRNSGGWS*L**YRPSRIERKLT  86
                RSNCL ++SG W * **Y+ S+ ER+ T
Subject   3102  RSNCLRKSSGDWL*R**YKRSQTERRHT  3185

Range 8: 2451 to 3155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 116/235(49%) 0/235(0%) Plus/Minus
Query       33  VSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT*  737
                VSS L+P PT   ETIRP      +  *HA  GSAR  +RTQ  YP+   S *AN STHDQR+ +LST  *   NHQ SPVS P+YVP*T ST SS + TR ++  *R EKTD N AC+  T+  + C  V    YS+++L*S   N  KHR   +Q T+    FA LP    V* G  L  S  LETSSTTRIF   SS  L P++K LS +R+P* Q   Y H  A P  +T*
Subject   2451  VSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKTRRTQMFYPRMQTSY*ANTSTHDQRNRNLSTFV*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*  3155

Range 9: 2542 to 3075 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 93/178(52%) 0/178(0%) Minus/Plus
Query      113  GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH  646
                G+S  EE ++NIRVVLDVSNR D  R  P YT    GS AK     V+C    RCL +F  +D+K   E*  + T  Q  F  V  LQA L SVFS+RYR+   LV   EE VD V*GT* G DTGD *WF ++Q +VLR   R*SCVL+FA*+D+ + G*+ *VR  +RAEP++AC+
Subject   2542  GASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQTNVLRFRFR*SCVLVFA*YDVCIRG*NI*VRRVLRAEPEDACY  3075

Range 10: 3103 to 3186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        2  GRIVSRGTVGAGRSSDDTGHHG*KESSR  85
                GRIVS   VG G S DDT  H  KE +R
Subject   3103  GRIVSGRAVGTGCSVDDTSDHRQKEGTR  3186

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 10

Range 1: 2378 to 3187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
599.9 bits(1303) 0.0 253/270(94%) 0/270(0%) Minus/Plus
Query        1  VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  810
                +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV
Subject   2378  LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  3187

Range 2: 2566 to 3186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
401.5 bits(870) 0.0 177/207(86%) 0/207(0%) Plus/Minus
Query        2  T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM  622
                T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST  +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE  *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI +
Subject   2566  TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFI  3186

Range 3: 2374 to 2508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 32/45(71%) 0/45(0%) Plus/Minus
Query      680  MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH  814
                M PT AL S  RVSI QYV+FFAASF  TLSTVI  SSAV SL H
Subject   2374  MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLKH  2508

Range 4: 2396 to 3187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.9 bits(694) 0.0 136/264(52%) 0/264(0%) Plus/Minus
Query        1  YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL  792
                +V  LS+ D LYHQ Y+Q PL   RQFDL+++   ++ +MR LAPRA + VLK  IH+ R R+KQI VHTINE+ +*VHL E ++TIS LRYH QTMSLKR RH PR+I+RG+S + NA+RKLM+T+PV ++L+    A  *L  +TP++ Y+L + M +SIA+ ++S+ Y +  S +FH    YS A +S  Q  WKHQAQLEYF + LL  L QF+N+*V++V+HE+N   M+T  R+HL +RD+LR   L HAF+CH+  L
Subject   2396  HVCLLSVCDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARHGVLKCSIHECRRRIKQIRVHTINEIGI*VHLSE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKHAFDCHNLFL  3187

Range 5: 2499 to 3071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 100/191(52%) 0/191(0%) Minus/Plus
Query      117  LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM  689
                L SW T  T* F NW K  RR+  KYSSCA*CFQ +*+ E  A LY +  WK+ E+    C L    AML  I  +R *   GV  +SY  A   + S   TG V ISFL AL   L PR I RG+CR RLRDIVW *YRR LMV   S +CT*   SLIVCT ICL R    WI  LST   ARGA++RM
Subject   2499  LVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSDKCT*IPISLIVCTRICLIRRLHSWIEHLSTPCLARGARRRM  3071

Range 6: 2398 to 2511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 20/38(53%) 0/38(0%) Minus/Plus
Query      677  GESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG  790
                G+ YDS KR  ER  EE+HVL +G+A +*+*   W HG
Subject   2398  GKGYDSRKRA*ERGCEEHHVLPNGHALL*S*SASWFHG  2511

Range 7: 3102 to 3185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        3  RSNCLPRNSGGWS*L**YRPSRIERKLT  86
                RSNCL ++SG W * **Y+ S+ ER+ T
Subject   3102  RSNCLRKSSGDWL*R**YKRSQTERRHT  3185

Range 8: 2451 to 3155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 116/235(49%) 0/235(0%) Plus/Minus
Query       33  VSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT*  737
                VSS L+P PT   ETIRP      +  *HA  GSAR  +RTQ  YP+   S *AN STHDQR+ +LST  *   NHQ SPVS P+YVP*T ST SS + TR ++  *R EKTD N AC+  T+  + C  V    YS+++L*S   N  KHR   +Q T+    FA LP    V* G  L  S  LETSSTTRIF   SS  L P++K LS +R+P* Q   Y H  A P  +T*
Subject   2451  VSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKTRRTQMFYPRMQTSY*ANTSTHDQRNRNLSTFV*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*  3155

Range 9: 2542 to 3075 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 93/178(52%) 0/178(0%) Minus/Plus
Query      113  GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH  646
                G+S  EE ++NIRVVLDVSNR D  R  P YT    GS AK     V+C    RCL +F  +D+K   E*  + T  Q  F  V  LQA L SVFS+RYR+   LV   EE VD V*GT* G DTGD *WF ++Q +VLR   R*SCVL+FA*+D+ + G*+ *VR  +RAEP++AC+
Subject   2542  GASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQTNVLRFRFR*SCVLVFA*YDVCIRG*NI*VRRVLRAEPEDACY  3075

Range 10: 3103 to 3186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        2  GRIVSRGTVGAGRSSDDTGHHG*KESSR  85
                GRIVS   VG G S DDT  H  KE +R
Subject   3103  GRIVSGRAVGTGCSVDDTSDHRQKEGTR  3186

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 10

Range 1: 2519 to 3328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
599.9 bits(1303) 0.0 253/270(94%) 0/270(0%) Minus/Plus
Query        1  VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  810
                +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV
Subject   2519  LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  3328

Range 2: 2707 to 3327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
403.4 bits(874) 0.0 178/207(86%) 0/207(0%) Plus/Minus
Query        2  T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM  622
                T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST  +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE  *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI M
Subject   2707  TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFM  3327

Range 3: 2515 to 2649 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 31/45(69%) 0/45(0%) Plus/Minus
Query      680  MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH  814
                M PT AL S  RVSI QYV+FFAASF  TLSTV+  SSAV SL H
Subject   2515  MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVMTFSSAVASLRH  2649

Range 4: 2537 to 3328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
321.4 bits(695) 0.0 139/264(53%) 0/264(0%) Plus/Minus
Query        1  YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL  792
                +V  LS+ D LYHQ Y+Q PL   RQFDL+++   ++ +MR LAPRA  SVLK  I++ R R+KQI +HTIN++ +*VHLPE ++TIS LRYH QTMSLKR RH PR+I+RGVS + NA+RKLM+T+PV ++L+    A  *L  + P+K Y+L + M +SIA+ ++S+ Y V LS +FH    YSKA +S  Q  W+HQAQLEY  V LL  L QFEN+*VI+V+HE+N   M+T  RIHL +R +LR   L H F+CH   L
Subject   2537  HVCLLSVSDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARYSVLKCSIYERRRRIKQIRIHTINKIGI*VHLPE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMVTKPVAYILDRKSTATW*LNDVAPEKTYNLLHGMSVSIAYASDSIHYHVALSHHFHTQFWYSKAAVSGCQLYWEHQAQLEYLYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLFLKHTFDCHDLFL  3328

Range 5: 2640 to 3212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.6 bits(414) 0.0 105/191(55%) 0/191(0%) Minus/Plus
Query      117  LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM  689
                L SW T MT* FSNW K  RR+T +YSSCA*C Q +*+ E  ALLY +  WK+ ER T  C L    AML  I  +R * F G   +SY  A   + S   TG V ISFL AL   LTPR I RG+CR RLRDIVW *YRR LMV   SG+CT*    LIVC  ICL R R   I  LSTL+ ARGA++RM
Subject   2640  LVSWLTSMT*MFSNWHKH*RRKT*RYSSCA*CSQ*S*QPETAALLYQNWVWKWCERAT**CILSEA*AMLTLIPCRRL*VFSGATSFSYQVAVLFRSSM*ATGLVTISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSGKCT*IPILLIVCIRICLIRRRRS*IEHLSTLYLARGARRRM  3212

Range 6: 2515 to 2652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 21/46(46%) 0/46(0%) Minus/Plus
Query      677  VGETNNGRGESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG  814
                V E     G+ +DS K   ER  EE++VL +GYA +*+*  GW HG
Subject   2515  VSEARYS*GKGHDSRKCA*ERGCEEHNVLPNGYALL*S*SAGWFHG  2652

Range 7: 3243 to 3326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        3  RSNCLPRNSGGWS*L**YRPSRIERKLT  86
                RSNCL ++SG W * **Y+ S  ER+ T
Subject   3243  RSNCLRKSSGDWL*R**YKRSLTERRHT  3326

Range 8: 2595 to 3317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.2 bits(472) 0.0 124/241(51%) 0/241(0%) Plus/Minus
Query       12  SFYP*WPVSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT  734
                SF  *  VSS L+P PT   ETIRP      +  *HA  GSAR  QRTQ  Y +   S *AN +THDQ++ +LST A*   NHQ SPVS P+YVP*T ST SS + TRR++  *R EKTD N AC+  T+  + C  V     S+K+L*S   N  KHR   +Q T+ R PFA LP    V**G  L  S  L TSSTTRI  C SS  L P+RK LSH+R+P* QP  Y H  AYP  +T
Subject   2595  SFCQ*SLVSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKIQRTQMFYLRTPTSY*ANTNTHDQQNRNLSTFA*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDGNQACSLHTRPKKHCHLVTERRCSRKNL*SSARNECKHRLRLRQYTLSRRPFAPLPHPVLV**GCRLWLSALLGTSSTTRISLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGST  3317

Range 9: 2683 to 3216 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.6 bits(390) 0.0 95/178(53%) 0/178(0%) Minus/Plus
Query      113  GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH  646
                G+S  EE H++IRVVLDV NR D  R  PYYT    GS AKG R  V+C    RCL +F  +D+K F E   + T  Q  F  V  LQA L SVFS+RYR+  RLV   EE VD V*GT* G DTGD *WF ++QA+VLR    *SCV +FA*+D+ +  *+ *VRC +RAEP++AC+
Subject   2683  GTSTREERHKDIRVVLDVPNRADSQRRQPYYTRTGCGSGAKGRRDNVYCRRRRRCLHSFRAEDYKFFREQRRSVTKWQCFFGRVCRLQAWLPSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQANVLRFRFC*SCVFVFA*YDVGVRR*NI*VRCILRAEPEDACY  3216

Range 10: 3244 to 3327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        2  GRIVSRGTVGAGRSSDDTGHHG*KESSR  85
                GRIVS   VG G S DDT  H  KE +R
Subject   3244  GRIVSGRAVGTGCSVDDTSDH*QKEGTR  3327

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 10

Range 1: 2454 to 3263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
597.2 bits(1297) 0.0 252/270(93%) 0/270(0%) Minus/Plus
Query        1  VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  810
                +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGD I+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV
Subject   2454  LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDEIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  3263

Range 2: 2642 to 3262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
398.8 bits(864) 0.0 178/207(86%) 0/207(0%) Plus/Minus
Query        2  T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM  622
                T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVF LRA +TAYS VLST  +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN***PSL*PTYSTE ALPLG+ TTLLPKKLMIF TE  *ASPTPPTVY ++SPFR TSTPSSGIVR PS AVSSIGNIKHNSNI M
Subject   2642  TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVF*LRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN***PSL*PTYSTEKALPLGN*TTLLPKKLMIFCTE*V*ASPTPPTVYIISSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFM  3262

Range 3: 2450 to 2584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 32/45(71%) 0/45(0%) Plus/Minus
Query      680  MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH  814
                M PT AL S  RVSI QYV+FFAASF  TLSTVI  SSAV SL H
Subject   2450  MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLRH  2584

Range 4: 2472 to 3263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
315.4 bits(682) 0.0 139/264(53%) 0/264(0%) Plus/Minus
Query        1  YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL  792
                +V  LS+ D LYHQ Y+Q PL   RQFDL+++   ++ +MR L PRA  SVLK  IH+ R R+KQI VHTIN++ + VHLPE ++TIS LRYH QTMSLKR RH PR+I+RGVS + NA+RKLMIT+PV ++L+    A  *L  + P+K  DL + M +SIA+ ++ + Y V LS +FH    YS A +S  Q  W+HQAQLEYF V LL  L QFEN+*VI+V+HE+N   M+T  RIHL +R +LR  +L H F+CH+  L
Subject   2472  HVCLLSVSDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLTPRARYSVLKCSIHERRRRIKQIRVHTINKIGIQVHLPE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMITKPVAYILDRKSTATW*LNDVAPEKTNDLLHGMSVSIAYASDCIHYLVALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLLLKHTFDCHNLFL  3263

Range 5: 2575 to 3147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.2 bits(424) 0.0 105/191(55%) 0/191(0%) Minus/Plus
Query      117  LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM  689
                L SW T MT* FSNW K  RR+T KYSSCA*C Q +*+ E  A LY +  WK+ ER T  C      AML  I  +RS  F G   +SY  A   + S   TG VIISFL AL   LTPR I RG+CR RLRDIVW *YRR LMV   SG+CT     LIVCT ICL R R  WI  LSTL+ ARG ++RM
Subject   2575  LVSWLTSMT*MFSNWHKH*RRKT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERATR*CIQSEA*AMLTLIPCRRSLVFSGATSFSYQVAVLFRSSM*ATGLVIISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSGKCTWIPILLIVCTRICLIRRRRSWIEHLSTLYLARGVRRRM  3147

Range 6: 2450 to 2587 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 21/46(46%) 0/46(0%) Minus/Plus
Query      677  VGETNNGRGESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG  814
                V E     G+ YDS K   E   EE++VL +GYA +*+*  GW HG
Subject   2450  VSEARYS*GKGYDSRKCA*EGGCEEHNVLPNGYALL*S*SAGWFHG  2587

Range 7: 3178 to 3261 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        3  RSNCLPRNSGGWS*L**YRPSRIERKLT  86
                RSNCL ++SG W * **Y+ S  ER+ T
Subject   3178  RSNCLRKSSGDWL*R**YKRSLTERRHT  3261

Range 8: 2530 to 3252 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 123/241(51%) 0/241(0%) Plus/Minus
Query       12  SFYP*WPVSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT  734
                SF  *  VSS L+P PT   ETIRP      +  *HA   SAR  QRTQ  YP+   S *AN STHDQ++ + ST A*   NHQ SPVS P+YVP*T ST SS + TRR++  *R EKTDDN AC+  T+  + C  V     S+K+ *S   N  KHR   +  T+ R PFA LP    V* G  L  S  L TSSTTRIF C SS  L P+RK LSH+R+P* QP  Y H  AYP  +T
Subject   2530  SFCQ*SLVSSTLQPVPTALPETIRPCRAPHVYPR*HASSDSARKIQRTQMFYPRTPTSY*ANTSTHDQQNRNPSTFA*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDDNQACSLHTRPKKHCHLVTERRCSRKN**SSARNECKHRLRLRLYTLSRRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGST  3252

Range 9: 2618 to 3151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 95/178(53%) 0/178(0%) Minus/Plus
Query      113  GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH  646
                G+S  EE H+NIRVVLDV NR D  R  P YT    GS AKG R  V+     RCL +F  +DH  F E   + T  Q  F  V  LQA LSSVFS+RYR+  RLV   EE VD V*GT* G DTGD *WF ++QA+VL     *SCVL+FA*+D+ + G*+ *VRC +RAE ++AC+
Subject   2618  GTSTREERHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRRDNVYSRRRRRCLHSFRAEDH*FFREQRRSVTKWQCFFGRVCRLQAWLSSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQANVLGFRFC*SCVLVFA*YDVGVRG*NI*VRCILRAESEDACY  3151

Range 10: 3179 to 3262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        2  GRIVSRGTVGAGRSSDDTGHHG*KESSR  85
                GRIVS   VG G S DDT  H  KE +R
Subject   3179  GRIVSGRAVGTGCSVDDTSDH*QKEGTR  3262

Grapevine leafroll associated virus 3 isolate GH11, complete genome

Sequence ID: JQ655295.1 Length: 18671 Number of Matches: 6

Range 1: 2385 to 3182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
308.1 bits(666) 0.0 125/266(47%) 0/266(0%) Minus/Plus
Query        7  LTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA  804
                L+TA   +     ++   A+K+++YC M+++ C+H+A  GFMVDVYD+   ++A+A++ K   +F+L LMFPIEL   +G + + EL   V R+G+ + Y VG  G+ Y HS +K+  FF +  +++ SG+AY +EY GYR GYH F++C    A  S    R +  TF G S+V +P +    +SF+ + LDSDFVDRVYSY LNT  TF +RTFEYAV   RSQKTHVI G+RVVH+KVE+SP++ W LVV++M QAI DR K+
Subject   2385  LSTAGGESFVSSDLLTEAASKSVSYCSMESQRCKHRADAGFMVDVYDMSPRQVAEAMDLKGCLVFDLALMFPIELLYGNGEVCLEELDTLVKREGERLTYNVGQCGEVYEHSYTKVSGFFTNAYIRVSSGAAYKLEYEGYRCGYHHFTMCRAQKAQGSETTQRSLVPTFVGKSVVFLPIVEGTSVSFKSIVLDSDFVDRVYSYALNTIGTFENRTFEYAVGAVRSQKTHVITGSRVVHNKVEVSPDDMWALVVSIMAQAIKDRAKS  3182

Range 2: 2885 to 3178 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 50/98(51%) 0/98(0%) Plus/Minus
Query       11  FFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNV  304
                F LS MA  +  TT+ H SSG+ STL CTTR+P +TCVF      TAYSKVL +KV +VL  YE T STKSES+ I L      +  G  T   P NV
Subject   2885  FALSFMA*AMMETTNAHMSSGETSTLLCTTRLPVITCVFCDLTAPTAYSKVLFSKVPIVLRAYE*TLSTKSESRTIDLKLTLVPSTIGKKTTDLPTNV  3178

Range 3: 2579 to 2818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 33/80(41%) 0/80(0%) Plus/Minus
Query      371  **PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNS  610
                **P L*P+YS+  A P  +      KK +    EC+* SP  PT+Y   SP   T   SS     P    SSIGNI+  S
Subject   2579  **PHL*PSYSSLYAAPDETRMYAFVKKPLTLV*ECS*TSPHWPTLYVRRSPSLFTKVSSSSKQTSPFPYRSSIGNIRAKS  2818

Range 4: 2958 to 3161 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 29/68(43%) 0/68(0%) Plus/Minus
Query       28  GLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*  231
                GL H   D  P  +GR FD IMY+A S  +MRFL P   +SVLKS + +    V+ I ++ I+++R+*
Subject   2958  GLSHDGDD*RPHVIGRNFDFIMYNATSRDNMRFLRPYRSHSVLKSSVFESTNCVESIRINPIDKIRI*  3161

Range 5: 2454 to 2621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 17/56(30%) 0/56(0%) Plus/Minus
Query      568  ISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIR  735
                I  ++F+W+H++ +E    L +   S      +++V H+ +   MLT  R H TIR
Subject   2454  IPIQKFNWEHKS*IENQTPLKIHRFSNLSGRHIVDVHHKPSVGSMLTSLRFHRTIR  2621

Range 6: 2935 to 3171 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 29/79(37%) 0/79(0%) Plus/Minus
Query       18  YP*WPVSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTR  254
                YP W      R  PT  RE +R Y+V+R F  *HAF  +  + QRTQK   ++ + C* + +   +++P+L  S *+ R
Subject   2935  YPLWLEP*WRRLTPTCHREKLRLYYVQRDFP**HAFSATLPLPQRTQKFCFRKYQLC*EHTNKPYRQNPNLGRSI*S*R  3171

Nucleotide Sequence (489 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
489

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 5201 to 5407 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(238) 0.0 44/69(64%) 0/69(0%) Minus/Plus
Query      131  IAPARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS  337
                + P + E    ++V  + ++EKF GAR+L+S DIFVDKLRGRDVAFYSKYSRRY YNGGSH SQGW+K+
Subject   5201  VTPVKVEVSAPRNVQTAMEREKFKGARKLVSSDIFVDKLRGRDVAFYSKYSRRYVYNGGSHASQGWNKA  5407

Range 2: 5051 to 5155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.3 bits(110) 0.0 21/35(60%) 0/35(0%) Minus/Plus
Query      383  DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE  487
                +EESE YLC+S  + E G ASPSGCK+AD +S +E
Subject   5051  EEESEGYLCLSSTKVERGDASPSGCKSADCKSISE  5155

Range 3: 5237 to 5422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 28/62(45%) 0/62(0%) Plus/Minus
Query      116  PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLRFSNI  301
                P+LI   +P LT VRT+II +PS +LAV+  ++P   ID+N+A +* AG  + F L R  N+
Subject   5237  PKLIKRFIPTLTRVRTTIIDIPSAVLAVECYISPPQLIDENVAAH*FAGPFEFFTLHRRLNV  5422

Range 4: 5058 to 5153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 16/32(50%) 0/32(0%) Plus/Minus
Query      385  PLYSYHPRSYNHWATRRRLLL**G*RTDNFHS  480
                P+YS + R+YNHWA RR   L *   TD+  S
Subject   5058  PIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRS  5153

Range 5: 5217 to 5426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 26/70(37%) 0/70(0%) Plus/Minus
Query      112  PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIFQHLAIEALR  321
                P  AH   Y+  D RAN HY  TF  TCC+    +   YR+K R  L  G L  F + + F+      LR
Subject   5217  PPEAHQALYSNPDSRANHHYRHTFGCTCCRMLHLSPATYRRKCRCSLVCGPL*IFHAPSPFERFGELTLR  5426

Range 6: 5057 to 5164 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 19/36(53%) 0/36(0%) Plus/Minus
Query      374  RVPFRSTPTIRGLTTTGRRAAAFCSDRANAQITFTL  481
                R   R T  I GLTTTGR  A     RA AQI F L
Subject   5057  RAFLRYTLAISGLTTTGRSVATLHFGRA*AQIAFAL  5164

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6

Range 1: 5201 to 5407 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(238) 0.0 44/69(64%) 0/69(0%) Minus/Plus
Query      131  IAPARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS  337
                + P + E    ++V  + ++EKF GAR+L+S DIFVDKLRGRDVAFYSKYSRRY YNGGSH SQGW+K+
Subject   5201  VTPVKVEVSAPRNVQTAMEREKFKGARKLVSSDIFVDKLRGRDVAFYSKYSRRYVYNGGSHASQGWNKA  5407

Range 2: 5051 to 5155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.3 bits(110) 0.0 21/35(60%) 0/35(0%) Minus/Plus
Query      383  DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE  487
                +EESE YLC+S  + E G ASPSGCK+AD +S +E
Subject   5051  EEESEGYLCLSSTKVERGDASPSGCKSADCKSISE  5155

Range 3: 5237 to 5422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 28/62(45%) 0/62(0%) Plus/Minus
Query      116  PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLRFSNI  301
                P+LI   +P LT VRT+II +PS +LAV+  ++P   ID+N+A +* AG  + F L R  N+
Subject   5237  PKLIKRFIPTLTRVRTTIIDIPSAVLAVECYISPPQLIDENVAAH*FAGPFEFFTLHRRLNV  5422

Range 4: 5058 to 5153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 16/32(50%) 0/32(0%) Plus/Minus
Query      385  PLYSYHPRSYNHWATRRRLLL**G*RTDNFHS  480
                P+YS + R+YNHWA RR   L *   TD+  S
Subject   5058  PIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRS  5153

Range 5: 5217 to 5426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 26/70(37%) 0/70(0%) Plus/Minus
Query      112  PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIFQHLAIEALR  321
                P  AH   Y+  D RAN HY  TF  TCC+    +   YR+K R  L  G L  F + + F+      LR
Subject   5217  PPEAHQALYSNPDSRANHHYRHTFGCTCCRMLHLSPATYRRKCRCSLVCGPL*IFHAPSPFERFGELTLR  5426

Range 6: 5057 to 5164 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 19/36(53%) 0/36(0%) Plus/Minus
Query      374  RVPFRSTPTIRGLTTTGRRAAAFCSDRANAQITFTL  481
                R   R T  I GLTTTGR  A     RA AQI F L
Subject   5057  RAFLRYTLAISGLTTTGRSVATLHFGRA*AQIAFAL  5164

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 12

Range 1: 5348 to 5548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.7 bits(209) 0.0 39/67(58%) 0/67(0%) Minus/Plus
Query      131  PARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS  331
                P + EE  ++D   + + E+F GAR+L+  DIFVDKLRGR+VAF+SK SR Y YNGGSH SQGW+K+
Subject   5348  PVKVEESATRDAQTATEPERFKGARKLVCSDIFVDKLRGREVAFFSKCSRGYVYNGGSHASQGWNKA  5548

Range 2: 5192 to 5296 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.5 bits(126) 0.0 24/35(69%) 0/35(0%) Minus/Plus
Query      383  DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE  487
                DEE+ESYLC+S  +AE G ASPSGCK+ADG+S  E
Subject   5192  DEENESYLCLSSTKAERGDASPSGCKSADGKSVPE  5296

Range 3: 5401 to 5544 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 32/48(67%) 0/48(0%) Plus/Minus
Query      135  LCHP*LTCEPPXXXXXXXXXXXNATSRPLNLSTKISPDISSRAPRNFS  278
                L  P*L CEPPL*+Y RL+LL NATS P NLSTK+S   S RAP N S
Subject   5401  LFQP*LACEPPL*TYPRLHLLKNATSLPRNLSTKMSLHTSLRAPLNLS  5544

Range 4: 5193 to 5294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 17/34(50%) 0/34(0%) Plus/Minus
Query      385  PLYSYHPRSYNHWATRRRLLL**G*RTDNFHSPH  486
                P++S+H R+YNHWA RR + L     TD+F S H
Subject   5193  PVHSFHQRTYNHWAKRRHVPLWWSLSTDSFRSLH  5294

Range 5: 5390 to 5563 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 26/58(45%) 0/58(0%) Plus/Minus
Query      116  PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLR  289
                P+LI   +P LT VRT+II V S  LA +   +P   ID+N+A +* AG  + F L R
Subject   5390  PKLIKRFVPTLTRVRTTIIDVSSAALAEECYFSPPQLIDENVAAH*FAGPFESFRLRR  5563

Range 6: 5192 to 5305 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 20/38(53%) 0/38(0%) Plus/Minus
Query      374  RVPFRSTPTIRGLTTTGRRAAAFCSDRANAQITFTLLI  487
                R   R T +I GLTTTGR  A F    A AQI F L I
Subject   5192  RTFLRYTLSISGLTTTGRSVATFRFGGA*AQIAFVLFI  5305

Range 7: 5358 to 5567 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 24/70(34%) 0/70(0%) Plus/Minus
Query      112  PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIFQHLAIEALR  321
                P  AH    +  D RAN HY R    TC +    +   YR+K R  L  G L  F + + F+ L    LR
Subject   5358  PPEAHQALCSNPDSRANHHYRRILGCTC*RMLLLSPATYRRKCRCTLVCGPL*IFQAPSPFERLG*LTLR  5567

Range 8: 5191 to 5256 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 15/22(68%) 0/22(0%) Plus/Minus
Query      423  GDAPPPSALIGLTHR*LSLSSS  488
                G+A P SAL+ L HR*LS SSS
Subject   5191  GEASPRSALVELKHR*LSFSSS  5256

Range 9: 5210 to 5287 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(99) 0.0 18/26(69%) 0/26(0%) Minus/Plus
Query        2  YLCVSPIRAEGGGASPSGCKTADGRS  79
                YLC+S  +AE G ASPSGCK+ADG+S
Subject   5210  YLCLSSTKAERGDASPSGCKSADGKS  5287

Range 10: 5175 to 5219 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 9/15(60%) 0/15(0%) Minus/Plus
Query       70  GRMKFPMRRVKVICA  114
                GRM   M+R K ICA
Subject   5175  GRMTIRMKRTKAICA  5219

Range 11: 5404 to 5532 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 19/43(44%) 0/43(0%) Minus/Plus
Query      147  KVSRCPRANIWRYFCR*IKRA*RRVLQQV*SKVRL*WRFARKS  275
                K+ R P+ ++ R+F R*+      +LQQV  ++RL*W FAR+S
Subject   5404  KIQRGPQTSVQRHFRR*VAGERSSILQQVQPRIRL*WWFARES  5532

Range 12: 5200 to 5295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 18/32(56%) 0/32(0%) Minus/Plus
Query      384  E*KLSVR*PYQSXXXXRVAQWL*DRGW*E*SG  479
                E KLSV   +QS   RR AQWL* R W E +G
Subject   5200  ERKLSVLKLHQSGTWRRFAQWL*VR*WKECTG  5295

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6

Range 1: 1416 to 1622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.7 bits(209) 0.0 40/69(58%) 0/69(0%) Minus/Plus
Query      131  IAPARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS  337
                + P + E         + K+EKF GAR+L+  DIFVDKLRGR+VAFYSK SR Y YNGGSH SQGW+K+
Subject   1416  VTPVKIEVSXXXXXQTAMKREKFKGARKLVCSDIFVDKLRGREVAFYSKCSRSYVYNGGSHASQGWNKA  1622

Range 2: 1323 to 1370 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.1 bits(65) 0.0 12/16(75%) 0/16(0%) Minus/Plus
Query      383  ASPSGCKTADGRSRAE  430
                ASPSGCK+ADG+S +E
Subject   1323  ASPSGCKSADGKSISE  1370

Range 3: 1459 to 1641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 25/61(41%) 0/61(0%) Plus/Minus
Query      112  PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIF  294
                P  AH   Y+  D RAN HY R F  TCC+    +   YR+K R  L  G L  F +S+ F
Subject   1459  PLEAHQALYSNPDSRANHHYRRNFGCTCCRMLLLSPATYRRKCRCTLVCGPL*IFHASSPF  1641

Range 4: 1321 to 1365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 10/15(67%) 0/15(0%) Plus/Minus
Query      388  LYSYHPRSYNHWATR  432
                +YS+H R+YNHWA R
Subject   1321  IYSFHQRTYNHWAKR  1365

Range 5: 1464 to 1634 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 26/57(46%) 0/57(0%) Plus/Minus
Query      119  QLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLR  289
                +LI   +P LT VRT+II V S  LAV+   +P   ID+N+A +* AG  + F L R
Subject   1464  KLIKRFIPTLTRVRTTIIDVTSAALAVECYFSPPQLIDENVAAH*FAGPFEFFTLHR  1634

Range 6: 1326 to 1361 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 9/12(75%) 0/12(0%) Plus/Minus
Query      392  TPTIRGLTTTGR  427
                T +I GLTTTGR
Subject   1326  TLSISGLTTTGR  1361

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 12

Range 1: 5283 to 5483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.3 bits(217) 0.0 40/67(60%) 0/67(0%) Minus/Plus
Query      131  PARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS  331
                P + E   ++D   ++++EKF GAR+L+  DIFVDKLRGR+VAF+SK SRRY YNGGSH SQGW+K+
Subject   5283  PVKVEVSATRDAQTAKEREKFKGARKLVCSDIFVDKLRGREVAFFSKCSRRYVYNGGSHASQGWNKA  5483

Range 2: 5127 to 5231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.2 bits(132) 0.0 25/35(71%) 0/35(0%) Minus/Plus
Query      383  DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE  487
                DEESE YLC+S I+AE G ASPSGCK+ADG+S +E
Subject   5127  DEESEDYLCLSSIKAERGDASPSGCKSADGKSVSE  5231

Range 3: 5336 to 5479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 34/48(71%) 0/48(0%) Plus/Minus
Query      135  LCHP*LTCEPPXXXXXXXXXXXNATSRPLNLSTKISPDISSRAPRNFS  278
                L  P*L CEPPL*+YLRL+LL NATS P NLSTK+S   S RAP NFS
Subject   5336  LFQP*LACEPPL*TYLRLHLLKNATSLPRNLSTKMSLHTSLRAPLNFS  5479

Range 4: 5134 to 5229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 16/32(50%) 0/32(0%) Plus/Minus
Query      385  PLYSYHPRSYNHWATRRRLLL**G*RTDNFHS  480
                P++S+H R+YNHWA RR + L*    TD+  S
Subject   5134  PIHSFHQRTYNHWAKRRHVPL*WSLSTDSLRS  5229

Range 5: 5325 to 5498 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 27/58(47%) 0/58(0%) Plus/Minus
Query      116  PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLR  289
                P+LI   +P LT VRT+II V S  LA +   +    ID+N+A Y* AG  + F LLR
Subject   5325  PKLIKRFVPTLTRVRTTIIDVSSAALAEECYFSSPQLIDENVAAY*FAGPFEFFTLLR  5498

Range 6: 5127 to 5228 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 19/34(56%) 0/34(0%) Plus/Minus
Query      386  RSTPTIRGLTTTGRRAAAFCSDRANAQITFTLLI  487
                R T +I GLTTTGR  A F  D A AQI F L +
Subject   5127  RYTLSISGLTTTGRSVATFRFDGA*AQIVFALFV  5228

Range 7: 5419 to 5502 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 13/28(46%) 0/28(0%) Plus/Minus
Query      112  PSSAHLGTYATLDLRANLHYSRTFDYTC  195
                P  AH    +  D RAN HY R F  TC
Subject   5419  PPEAHQALCSNPDSRANHHYRRIFGCTC  5502

Range 8: 5126 to 5191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/22(68%) 0/22(0%) Plus/Minus
Query      423  GDAPPPSALIGLTHR*LSLSSS  488
                G+A P SAL+ L HR* SLSSS
Subject   5126  GEASPRSALMELKHR*SSLSSS  5191

Range 9: 5293 to 5388 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 14/32(44%) 0/32(0%) Plus/Minus
Query      226  YRQKYRQILARGHLETFLSSAIFQHLAIEALR  321
                YR+K R IL  G L  F + + F+HL    LR
Subject   5293  YRRKCRCILVCGPL*IFHAPSPFEHLG*LTLR  5388

Range 10: 5294 to 5467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 24/58(41%) 0/58(0%) Minus/Plus
Query      147  RRASIARCWKIAEERKVSRCPRANIWRYFCR*IKRA*RRVLQQV*SKVRL*WRFARKS  320
                R  S  RC       K+ R P+ ++ R+F R*+      +LQQV  K+RL*W FAR+S
Subject   5294  RSVSYPRCSNGEGA*KIQRGPQTSMQRHFRR*VAGKRSSILQQVQPKIRL*WWFARES  5467

Range 11: 5135 to 5221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 16/29(55%) 0/29(0%) Minus/Plus
Query      393  E*KLSVR*PYQSXXXXRVAQWL*DRGW*E  479
                E +LSV   +QS   RR AQWL* R W E
Subject   5135  ERRLSVLKLHQSGTWRRFAQWL*VR*WKE  5221

Range 12: 5145 to 5222 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(104) 0.0 19/26(73%) 0/26(0%) Minus/Plus
Query        2  YLCVSPIRAEGGGASPSGCKTADGRS  79
                YLC+S I+AE G ASPSGCK+ADG+S
Subject   5145  YLCLSSIKAERGDASPSGCKSADGKS  5222

Nucleotide Sequence (909 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
91
182
273
364
455
546
637
728
819
909

Descriptions

Alignments

Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds

Sequence ID: AF195822.1 Length: 12394 Number of Matches: 14

Range 1: 7809 to 8711 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
604.1 bits(1312) 0.0 261/301(87%) 0/301(0%) Plus/Plus
Query        3  VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP  905
                VM*+ARF*G LA+ +CNI  R*LTMATALVAPIVGDKGE LALLRNLPNDES DSWLPNAGRMNDDF RVGEAYRLQNLSIGYTINVSV+IKS+PKETMGVLRVVIEPRDGDI+IHTIRFYRDKNLIEQ+YTQRKGGVS VLKSRPVDASIVNFHSERNEKMTS+VNKQTRLMEVQTNGSSLGTSQ+KVPV+SLITVLVSLESKK+SCD L  +IPTEV SII+FDGT+DYK+I R RKYIFPYKTFRDSKY E L EAIAA NETAATQPETE  PAHPT +V YVTPPEGV ITN ATP
Subject   7809  VM*QARF*GILASLRCNIVLR*LTMATALVAPIVGDKGEYLALLRNLPNDESLDSWLPNAGRMNDDFSRVGEAYRLQNLSIGYTINVSVSIKSIPKETMGVLRVVIEPRDGDILIHTIRFYRDKNLIEQVYTQRKGGVSSVLKSRPVDASIVNFHSERNEKMTSMVNKQTRLMEVQTNGSSLGTSQIKVPVESLITVLVSLESKKVSCDTLSGMIPTEVSSIIRFDGTIDYKDIDRERKYIFPYKTFRDSKYREFLTEAIAALNETAATQPETEAIPAHPTTNVTYVTPPEGVAITNVATP  8711

Range 2: 8249 to 8710 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
283.3 bits(612) 0.0 128/154(83%) 0/154(0%) Minus/Minus
Query      443  GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDAS  904
                GVA LVI TPSGGVT*+T  VGCAG+ SVSG VAAVSF AAIAS  NS+YFESLKVLYGK+YFR+R+ISL*S VPSN IIE TSVGI  +S+SHD FFDSNDTKTVIKLSTGTL WLVPKLEPFV TSINLVCL TIEVIFSFLSL*KFTIDAS
Subject   8249  GVATLVIATPSGGVT*VTFVVGCAGIASVSG*VAAVSFSAAIASVKNSRYFESLKVLYGKIYFRSRSISL*SIVPSNLIIELTSVGIIPESVSHDTFFDSNDTKTVIKLSTGTLIWLVPKLEPFVWTSINLVCLLTIEVIFSFLSL*KFTIDAS  8710

Range 3: 7808 to 8203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
264.1 bits(570) 0.0 116/132(88%) 0/132(0%) Minus/Minus
Query        2  V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT  397
                V* CSIKFLSR*NLIVC+ MSPSRGSITTLSTPIVSLG DLI T+TLIV*PIERFCNLYASPTL+KSSFIRPALGSQES DSSFGKFLNKAK+SPLSPTIGATNAVAIVNHR +ILH + AS+PQNRA HIT
Subject   7808  V*TCSIKFLSR*NLIVCIRMSPSRGSITTLSTPIVSLGIDLIETETLIV*PIERFCNLYASPTLEKSSFIRPALGSQESRDSSFGKFLNKAKYSPLSPTIGATNAVAIVNHRSTILHLKLASIPQNRACHIT  8203

Range 4: 8246 to 8710 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 113/155(73%) 0/155(0%) Plus/Plus
Query      440  GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP  904
                GGCVNCEFSQ*KK*KNDFD  QAD +NGS +EW  LRN*P+QSPC*+FDYCLSIVRIEE+++  TL  DTN*S+FDNKV* D *L G  SR KV+FSV*DF*RFK+ GV    DR TK N RD+A NRSYTGASD  RNLCDTTRG  YN*  YP
Subject   8246  GGCVNCEFSQ*KK*KNDFDG*QAD*INGSPDEWFKLRN*PNQSPC*KFDYCLSIVRIEESIVRYTLWNDTN*SKFDNKV*WDY*LQGYRSRTKVYFSV*DF*RFKISGVFNRGDRGTKRNCRDSARNRSYTGASDNERNLCDTTRGSGYN*CGYP  8710

Range 5: 7808 to 8107 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.7 bits(412) 0.0 86/100(86%) 0/100(0%) Plus/Plus
Query        2  SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG  301
                SNVTSSVLRNTSELKV*Y TAVINNG+ VSGSYCWR*G VFGFIEKL E*R+PRFLAP*R S E RFLQSGRS+*VTKSFDRLHN*C R D*+ SQRNDG
Subject   7808  SNVTSSVLRNTSELKV*YCTAVINNGDCVSGSYCWR*GRVFGFIEKLAE*RVPRFLAP*RGSYERRFLQSGRSI*VTKSFDRLHN*CFRLD*VNSQRNDG  8107

Range 6: 8156 to 8206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 13/17(76%) 0/17(0%) Plus/Plus
Query      350  HYKILS*QEFNRTNLHS  400
                HYK+LS QEFNR +LHS
Subject   8156  HYKVLSRQEFNRASLHS  8206

Range 7: 7809 to 8537 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
398.3 bits(863) 0.0 188/243(77%) 0/243(0%) Minus/Minus
Query        3  RKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY  731
                RKN+LS A   L+INSP+K YYRTYFSWY   E I  +FLRF*RY*DSNQT NRDFDLASS*A  IRL FH*  LLV++RSHFFISFTVKIHN*RIHRSTFE+T D SFSLSVDL Y*ILV IE YSVY +V+VS  YYYSKHAHRFFG * NRDG INCVTYRKIL*PI FSHS EIV+H+T VREPRI G VIR VSQ*SQ L LISNNRSH*R  HC*SP +NIT * R* SSEPS SHY
Subject   7809  RKNILSFAIDILVINSPIKPYYRTYFSWYHSRECIARYFLRF*RY*DSNQTFNRDFDLASS*A*TIRLDFH*SSLLVNHRSHFFISFTVKIHN*RIHRSTFEHTTDTSFSLSVDLLY*ILVAIEPYSVYKNVSVSRFYYYSKHAHRFFGN*LNRDGNINCVTYRKIL*PICFSHSGEIVVHTTRVREPRIEGLVIRQVSQ*SQILSLISNNRSH*RSRHC*SPQYNITP*AR*YSSEPSLSHY  8537

Range 8: 8583 to 8708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 29/42(69%) 0/42(0%) Minus/Minus
Query      777  GSCVSYSHTLWWCHIDYVXXXXXXXXXXXXXXRGGFISCGDR  902
                GS +SYSH+LWWCHI YVR RMRR +FCF L RG F+ C DR
Subject   8583  GSHISYSHSLWWCHISYVRCRMRRYSFCFGLSRGSFV*CRDR  8708

Range 9: 8158 to 8712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
279.7 bits(604) 0.0 135/185(73%) 0/185(0%) Minus/Minus
Query      352  KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL*  906
                +G*  *L*  PLVVSH+LR  SDAPV*LLF+A SR+F  V RS  L TP+ LNL*KSYTEK TF R+ +P NQ S QTLLSNLLQLVS +RVY    SSILTILRQ*SN QQGL* G*FLS +HS  LPL  SAC  SKSFFHFFHCENSQLTHPPVYF* H * LLFFECR  LLNSC DR L*
Subject   8158  RG*PH*L*PLPLVVSHKLRSLSDAPV*LLFRAESRQFRLVPRSPRLKTPDILNL*KSYTEKYTFVRDRYPCNQ*SHQTLLSNLLQLVSFQRVYRTILSSILTILRQ*SNFQQGL*FG*FLSLNHSSGLPLI*SAC*PSKSFFHFFHCENSQLTHPPVYF*AHY*HLLFFECRLALLNSCRDRTL*  8712

Range 10: 7927 to 8109 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 51/61(84%) 0/61(0%) Minus/Minus
Query      121  RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN  303
                RPSFLWE+ *SRR H*LCNLSKDFVTY LLPL RNR S+D R*GAKNRG RHS SFSIKPN
Subject   7927  RPSFLWELT*SRRKH*LCNLSKDFVTYMLLPLWRNRRSYDPR*GAKNRGTRHSASFSIKPN  8109

Range 11: 7807 to 7875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 23/23(100%) 0/23(0%) Minus/Minus
Query        1  ITAVQYYTLSSLVFLRTELVTLL  69
                ITAVQYYTLSSLVFLRTELVTLL
Subject   7807  ITAVQYYTLSSLVFLRTELVTLL  7875

Range 12: 7912 to 8343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.7 bits(519) 0.0 114/144(79%) 0/144(0%) Plus/Plus
Query      106  EIRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM  537
                EIR S+WLY*ET RMT+P ILGSLT V * TIS EWEK IGYKIFR*VTQLM+PSRL+ FPKKRWACLE***+ ET T  YTL* SI TRI**+KSTLKEKE S V SKVDRWMRQL*IFTVKEMKK*LR  TSR  *WK +RM
Subject   7912  EIRESIWLY*ETCRMTSPSILGSLTRVV*TTISPEWEKHIGYKIFR*VTQLMFPSRLSQFPKKRWACLE***NRETETFLYTL*GSIATRI**SKSTLKEKEVSVVCSKVDRWMRQL*IFTVKEMKK*LRWLTSRLD*WKSRRM  8343

Range 13: 8404 to 8709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 71/102(70%) 0/102(0%) Plus/Plus
Query      598  YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLP  903
                YR*NRRK   I+S  *YQLK*VR** L GLLI R   A ES FFRIRLLEIQ+IGS+* +RS H  K PR S KQKL+RRIR+RT* M*HHQR  L*L  LP
Subject   8404  YR*NRRKYRAIHSLE*YQLK*VR**GLMGLLITRISIANESIFFRIRLLEIQNIGSF*PRRSRH*TKLPRLSPKQKLYRRIRQRT*LM*HHQREWL*LMWLP  8709

Range 14: 7807 to 7875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 16/23(70%) 0/23(0%) Plus/Plus
Query        1  K*CDELGSEEH*RTQSVILNSGD  69
                K*CD+LGSEE+*R   VIL  GD
Subject   7807  K*CDKLGSEEY*RA*GVILYCGD  7875

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 12

Range 1: 13965 to 14867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
566.0 bits(1229) 0.0 237/301(79%) 0/301(0%) Plus/Plus
Query        3  VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP  905
                VM*+A++* T  +S+C   + *L M TALVAPIVGDKGE L+LLRNLPND S +SWLPNAGRMNDDFF++GEAY+LQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGD++IHT+RFYRDKNLIEQ+YTQRKGGV  VLKSRPVD+SIVNFH+ER E MTS+VNKQ RLMEV TNGSSLG+SQ+KVPVDSLITV+VSLESKK+SCD L EL+P +VGSI+KFDGTVDYKEI R RKYIFPYKTFRDSKY E+L EAIAARNETAA QPETE  P HP A+V YVTPPEGV+ITN A P
Subject  13965  VM*QAQY*ETPVSSRCRFRKL*LIMTTALVAPIVGDKGEYLSLLRNLPNDNSQESWLPNAGRMNDDFFKIGEAYKLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDMLIHTLRFYRDKNLIEQVYTQRKGGVGSVLKSRPVDSSIVNFHNERKETMTSMVNKQNRLMEVFTNGSSLGSSQIKVPVDSLITVIVSLESKKVSCDGLSELVPNDVGSIVKFDGTVDYKEINRERKYIFPYKTFRDSKYREILTEAIAARNETAAAQPETETVPVHPIANVTYVTPPEGVSITNAAIP  14867

Range 2: 13964 to 14866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
463.4 bits(1005) 0.0 227/301(75%) 0/301(0%) Minus/Minus
Query        2  GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDASXXXXXXXXXXXXXX*V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT  904
                G+A  VI TPSGGVT*+T A+GC G  SVSG  AAVSFRAAIAS   S+YFESL VLYGK+YFR+R ISL*STVPSNF IEPTS G NS+S SH+ FFDSN+T TVIKLSTGTL WL PKLEPFV TSINL CL TIEVI SFLSL*KFTID STGLLL T  TPPFL V* CSIKFLSR*NL VC+++SPSRGSI TLSTPIVS G DLI TDTLIV PIERFCNLYASP LKKSSFIRPALGSQ+S + SFGKFL+K K+SPLSPTIGATNAV I+NH    LH E   V    A +IT
Subject  13964  GIAAFVIDTPSGGVT*VTFAIGCTGTVSVSG*AAAVSFRAAIASVKISRYFESLNVLYGKIYFRSRFISL*STVPSNFTIEPTSFGTNSESPSHETFFDSNETITVIKLSTGTLIWLDPKLEPFVKTSINLFCLLTIEVIVSFLSL*KFTIDESTGLLLRTLPTPPFLCV*TCSIKFLSR*NLRVCISISPSRGSIITLSTPIVSFGIDLIETDTLIVYPIERFCNLYASPILKKSSFIRPALGSQDSWELSFGKFLSKDKYSPLSPTIGATNAVVIINHSFLNLHLELTGVS*Y*ACYIT  14866

Range 3: 13965 to 14759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.5 bits(643) 0.0 155/265(58%) 0/265(0%) Minus/Minus
Query        3  FISCGDRFI*XXXXXXXXXXXIRKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY  797
                F+SC +RF * LP+  I K LIRK++L  A YFL+I+  V+ + R +   YQF E I *+FL  *R  +S+QTV+ DFDLA S* RAIR  FH*P LL+++  H F SF +KI++*RIHRSTFE T DA+FSL VDLF *+LVTIES SVY  +TV W YYYSKHAHRFF   FNR+ YIN V YRKIL* IR S+ +EI+IH T VREPR  G +IR VSQ* Q L  I N RSH*R CH *S L   T *   C    S  HY
Subject  13965  FVSCSNRFG*DLPVFRIPKRLIRKDILPFAIYFLVIDRSVEFHNRAHVVRYQFGESIA*NFL*L*RNYNSDQTVDWDFDLARS*TRAIRKDFH*PILLINH*GHSFFSFIMKIYD*RIHRSTFENTTDATFSLRVDLFN*VLVTIES*SVYKHITVPWFYYYSKHAHRFFWDRFNRNRYINRVPYRKIL*LIRLSYFKEIIIHPTRVREPRFLGIIIRQVSQ*RQILAFIPNYRSH*RRCHY*SQLSKSTP*AHWCFLVLSLLHY  14759

Range 4: 14811 to 14867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 10/19(53%) 0/19(0%) Minus/Minus
Query      849  RGSCVSYSHTLWWCHIDYV  905
                R SC+ Y +TLWW +I +V
Subject  14811  RDSCICYRYTLWWSYIGHV  14867

Range 5: 14317 to 14868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.2 bits(400) 0.0 101/184(55%) 0/184(0%) Minus/Minus
Query      355  KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL  906
                +G*L  L  HPLV  HR R  SDAP   LFQA    F FV++SL L +P   N * SYTE+ T  R+LFP N+  R+   S+  + V IRRV+ M  S  LT L Q*SNC+ GL* G  L+*SHS  LPLT+SA    +S F FFH EN +LT+PPVYF* H  R LFF CR V L+SCHDRIL
Subject  14317  QG*LHLLSIHPLVELHRSRSRSDAPELSLFQAEPPLFRFVQQSLRLRSPGISNP*TSYTERYTSVRDLFPCNRPFRRISQSSPRRSVPIRRVHRMKLSLTLTKL*Q*SNCRLGL*FGSILN*SHS*RLPLTYSAY*PLRS*FLFFHYENLRLTNPPVYF*EHYRRHLFFACRPVQLSSCHDRIL  14868

Range 6: 14083 to 14265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 41/61(67%) 0/61(0%) Minus/Minus
Query      121  RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN  303
                RPSFL   I*S++IH* C LSKDFVTYT L  *RN HS D R*GAK  G  HS SFS+K N
Subject  14083  RPSFLLGSI*SKQIH*SCTLSKDFVTYTPLLF*RNHHSSDPR*GAKILGNYHSASFSVKTN  14265

Range 7: 13963 to 14031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 19/23(83%) 0/23(0%) Minus/Minus
Query        1  ITAVQYYTLSSLVFLRTELVTLL  69
                ITA   YTLSSLVFL TELVTLL
Subject  13963  ITAF*IYTLSSLVFLSTELVTLL  14031

Range 8: 13964 to 14263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 72/100(72%) 0/100(0%) Plus/Plus
Query        2  SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG  301
                SNVTSSVLRNTSELKV* * AVINN N VSGSY W *  VF F EKL E*  PR LAP*R S+E* FL + R V*VTKSFDR+H+*CI  D*I  +RNDG
Subject  13964  SNVTSSVLRNTSELKV*I*KAVINNDNGVSGSYSWG*RRVFVFTEKLAE**FPRILAP*RGSDE**FL*NRRGV*VTKSFDRVHD*CICFD*IDPKRNDG  14263

Range 9: 14402 to 14866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 77/155(50%) 0/155(0%) Plus/Plus
Query      440  GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP  904
                GG VN +FS *KK   D +   A+ VNGS  EWL* R  P+QSP  QFD+C S VR++E+ M  TLRI T     D ++ R+  L GN SR +V+ SV*D * F++ G +  SD  TK N   +A*NR  +GASD  R+LC++TRGC  N  SYP
Subject  14402  GGFVNRKFS**KKRNYDLNG**AE*VNGSLYEWL*FRIEPNQSPSRQFDHCYSFVRVKESFMRWTLRIGTERRGLDCEIRRNGRLQGNKSRTEVYLSV*DV*GFEIPGDLNRSDCCTKRNSGGSA*NRDSSGASDRERDLCNSTRGCIDNKCSYP  14866

Range 10: 14312 to 14362 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 12/17(71%) 0/17(0%) Plus/Plus
Query      350  HYKILS*QEFNRTNLHS  400
                H KILS*QE N T LH+
Subject  14312  HSKILS*QELN*TGLHA  14362

Range 11: 14071 to 14499 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 93/143(65%) 0/143(0%) Plus/Plus
Query      109  IRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM  537
                I+ S+ LY*ET RM  P  LGSLT V *M IS + E+RI YKIFR* T+LMY  RLN   KKRWACLE***+H TV   YTL*DSIVTR * N+ST KEK AS V+SKVDRW+RQ *IF +KE K * +   SR G*WK  RM
Subject  14071  IKASICLY*ETCRMIIPKNLGSLTRVG*MMISLK*ERRISYKIFR*GTRLMYLFRLNRSQKKRWACLE***NHGTVICLYTL*DSIVTRT*LNRSTRKEKVASVVFSKVDRWIRQS*IFIMKEKKL*PQWLISRIG*WKSLRM  14499

Range 12: 14560 to 14868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 51/103(50%) 0/103(0%) Plus/Plus
Query      598  YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL  906
                +R*++RK H ++S N Y+    R *+ T   I RK* A  S  FRIR L I++ G  * KR  HE K  R SLKQ+  R IR RT* M* HQRV  *  QL L
Subject  14560  FR*SQRKFHAMDSPNWYRTTWARL*NSTERSITRK*IANGSISFRIRRLGIRNTGRS*PKRLLHETKQRRLSLKQRQFRCIRSRT*PM*LHQRVYR*QMQLSL  14868

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 12

Range 1: 13965 to 14867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
566.0 bits(1229) 0.0 237/301(79%) 0/301(0%) Plus/Plus
Query        3  VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP  905
                VM*+A++* T  +S+C   + *L M TALVAPIVGDKGE L+LLRNLPND S +SWLPNAGRMNDDFF++GEAY+LQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGD++IHT+RFYRDKNLIEQ+YTQRKGGV  VLKSRPVD+SIVNFH+ER E MTS+VNKQ RLMEV TNGSSLG+SQ+KVPVDSLITV+VSLESKK+SCD L EL+P +VGSI+KFDGTVDYKEI R RKYIFPYKTFRDSKY E+L EAIAARNETAA QPETE  P HP A+V YVTPPEGV+ITN A P
Subject  13965  VM*QAQY*ETPVSSRCRFRKL*LIMTTALVAPIVGDKGEYLSLLRNLPNDNSQESWLPNAGRMNDDFFKIGEAYKLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDMLIHTLRFYRDKNLIEQVYTQRKGGVGSVLKSRPVDSSIVNFHNERKETMTSMVNKQNRLMEVFTNGSSLGSSQIKVPVDSLITVIVSLESKKVSCDGLSELVPNDVGSIVKFDGTVDYKEINRERKYIFPYKTFRDSKYREILTEAIAARNETAAAQPETETVPVHPIANVTYVTPPEGVSITNAAIP  14867

Range 2: 13964 to 14866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
463.4 bits(1005) 0.0 227/301(75%) 0/301(0%) Minus/Minus
Query        2  GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDASXXXXXXXXXXXXXX*V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT  904
                G+A  VI TPSGGVT*+T A+GC G  SVSG  AAVSFRAAIAS   S+YFESL VLYGK+YFR+R ISL*STVPSNF IEPTS G NS+S SH+ FFDSN+T TVIKLSTGTL WL PKLEPFV TSINL CL TIEVI SFLSL*KFTID STGLLL T  TPPFL V* CSIKFLSR*NL VC+++SPSRGSI TLSTPIVS G DLI TDTLIV PIERFCNLYASP LKKSSFIRPALGSQ+S + SFGKFL+K K+SPLSPTIGATNAV I+NH    LH E   V    A +IT
Subject  13964  GIAAFVIDTPSGGVT*VTFAIGCTGTVSVSG*AAAVSFRAAIASVKISRYFESLNVLYGKIYFRSRFISL*STVPSNFTIEPTSFGTNSESPSHETFFDSNETITVIKLSTGTLIWLDPKLEPFVKTSINLFCLLTIEVIVSFLSL*KFTIDESTGLLLRTLPTPPFLCV*TCSIKFLSR*NLRVCISISPSRGSIITLSTPIVSFGIDLIETDTLIVYPIERFCNLYASPILKKSSFIRPALGSQDSWELSFGKFLSKDKYSPLSPTIGATNAVVIINHSFLNLHLELTGVS*Y*ACYIT  14866

Range 3: 13965 to 14759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.5 bits(643) 0.0 155/265(58%) 0/265(0%) Minus/Minus
Query        3  FISCGDRFI*XXXXXXXXXXXIRKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY  797
                F+SC +RF * LP+  I K LIRK++L  A YFL+I+  V+ + R +   YQF E I *+FL  *R  +S+QTV+ DFDLA S* RAIR  FH*P LL+++  H F SF +KI++*RIHRSTFE T DA+FSL VDLF *+LVTIES SVY  +TV W YYYSKHAHRFF   FNR+ YIN V YRKIL* IR S+ +EI+IH T VREPR  G +IR VSQ* Q L  I N RSH*R CH *S L   T *   C    S  HY
Subject  13965  FVSCSNRFG*DLPVFRIPKRLIRKDILPFAIYFLVIDRSVEFHNRAHVVRYQFGESIA*NFL*L*RNYNSDQTVDWDFDLARS*TRAIRKDFH*PILLINH*GHSFFSFIMKIYD*RIHRSTFENTTDATFSLRVDLFN*VLVTIES*SVYKHITVPWFYYYSKHAHRFFWDRFNRNRYINRVPYRKIL*LIRLSYFKEIIIHPTRVREPRFLGIIIRQVSQ*RQILAFIPNYRSH*RRCHY*SQLSKSTP*AHWCFLVLSLLHY  14759

Range 4: 14811 to 14867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 10/19(53%) 0/19(0%) Minus/Minus
Query      849  RGSCVSYSHTLWWCHIDYV  905
                R SC+ Y +TLWW +I +V
Subject  14811  RDSCICYRYTLWWSYIGHV  14867

Range 5: 14317 to 14868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.2 bits(400) 0.0 101/184(55%) 0/184(0%) Minus/Minus
Query      355  KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL  906
                +G*L  L  HPLV  HR R  SDAP   LFQA    F FV++SL L +P   N * SYTE+ T  R+LFP N+  R+   S+  + V IRRV+ M  S  LT L Q*SNC+ GL* G  L+*SHS  LPLT+SA    +S F FFH EN +LT+PPVYF* H  R LFF CR V L+SCHDRIL
Subject  14317  QG*LHLLSIHPLVELHRSRSRSDAPELSLFQAEPPLFRFVQQSLRLRSPGISNP*TSYTERYTSVRDLFPCNRPFRRISQSSPRRSVPIRRVHRMKLSLTLTKL*Q*SNCRLGL*FGSILN*SHS*RLPLTYSAY*PLRS*FLFFHYENLRLTNPPVYF*EHYRRHLFFACRPVQLSSCHDRIL  14868

Range 6: 14083 to 14265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 41/61(67%) 0/61(0%) Minus/Minus
Query      121  RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN  303
                RPSFL   I*S++IH* C LSKDFVTYT L  *RN HS D R*GAK  G  HS SFS+K N
Subject  14083  RPSFLLGSI*SKQIH*SCTLSKDFVTYTPLLF*RNHHSSDPR*GAKILGNYHSASFSVKTN  14265

Range 7: 13963 to 14031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 19/23(83%) 0/23(0%) Minus/Minus
Query        1  ITAVQYYTLSSLVFLRTELVTLL  69
                ITA   YTLSSLVFL TELVTLL
Subject  13963  ITAF*IYTLSSLVFLSTELVTLL  14031

Range 8: 13964 to 14263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 72/100(72%) 0/100(0%) Plus/Plus
Query        2  SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG  301
                SNVTSSVLRNTSELKV* * AVINN N VSGSY W *  VF F EKL E*  PR LAP*R S+E* FL + R V*VTKSFDR+H+*CI  D*I  +RNDG
Subject  13964  SNVTSSVLRNTSELKV*I*KAVINNDNGVSGSYSWG*RRVFVFTEKLAE**FPRILAP*RGSDE**FL*NRRGV*VTKSFDRVHD*CICFD*IDPKRNDG  14263

Range 9: 14402 to 14866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 77/155(50%) 0/155(0%) Plus/Plus
Query      440  GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP  904
                GG VN +FS *KK   D +   A+ VNGS  EWL* R  P+QSP  QFD+C S VR++E+ M  TLRI T     D ++ R+  L GN SR +V+ SV*D * F++ G +  SD  TK N   +A*NR  +GASD  R+LC++TRGC  N  SYP
Subject  14402  GGFVNRKFS**KKRNYDLNG**AE*VNGSLYEWL*FRIEPNQSPSRQFDHCYSFVRVKESFMRWTLRIGTERRGLDCEIRRNGRLQGNKSRTEVYLSV*DV*GFEIPGDLNRSDCCTKRNSGGSA*NRDSSGASDRERDLCNSTRGCIDNKCSYP  14866

Range 10: 14312 to 14362 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 12/17(71%) 0/17(0%) Plus/Plus
Query      350  HYKILS*QEFNRTNLHS  400
                H KILS*QE N T LH+
Subject  14312  HSKILS*QELN*TGLHA  14362

Range 11: 14071 to 14499 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 93/143(65%) 0/143(0%) Plus/Plus
Query      109  IRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM  537
                I+ S+ LY*ET RM  P  LGSLT V *M IS + E+RI YKIFR* T+LMY  RLN   KKRWACLE***+H TV   YTL*DSIVTR * N+ST KEK AS V+SKVDRW+RQ *IF +KE K * +   SR G*WK  RM
Subject  14071  IKASICLY*ETCRMIIPKNLGSLTRVG*MMISLK*ERRISYKIFR*GTRLMYLFRLNRSQKKRWACLE***NHGTVICLYTL*DSIVTRT*LNRSTRKEKVASVVFSKVDRWIRQS*IFIMKEKKL*PQWLISRIG*WKSLRM  14499

Range 12: 14560 to 14868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 51/103(50%) 0/103(0%) Plus/Plus
Query      598  YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL  906
                +R*++RK H ++S N Y+    R *+ T   I RK* A  S  FRIR L I++ G  * KR  HE K  R SLKQ+  R IR RT* M* HQRV  *  QL L
Subject  14560  FR*SQRKFHAMDSPNWYRTTWARL*NSTERSITRK*IANGSISFRIRRLGIRNTGRS*PKRLLHETKQRRLSLKQRQFRCIRSRT*PM*LHQRVYR*QMQLSL  14868

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 14

Range 1: 14311 to 15207 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
596.7 bits(1296) 0.0 256/299(86%) 0/299(0%) Plus/Plus
Query        3  VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTA  899
                VM* ARF*GT A+S+CNI Q+* TM TALVAPIVGDKGE L+LLRNLPND S DSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGDI+IHTIRFYRDKNLIEQ+YTQRKGGVS VLKSRPVD+SIVNFHSERNEK+TS+VNKQTRLMEV TN SSLGTSQ+KVP+DSLITV+VSLESKK+SC+ LFELIPTEV SII+FDGTVDYKEI RVRKYIFPYKTFRDSKY E L+EAIAARNE AATQPETE  PAH TA+V YVTPPEGV ITN A
Subject  14311  VM*LARF*GTPASSRCNIGQQ*FTMTTALVAPIVGDKGEFLSLLRNLPNDASLDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDILIHTIRFYRDKNLIEQVYTQRKGGVSSVLKSRPVDSSIVNFHSERNEKLTSMVNKQTRLMEVFTNNSSLGTSQIKVPIDSLITVVVSLESKKVSCETLFELIPTEVSSIIRFDGTVDYKEINRVRKYIFPYKTFRDSKYREFLSEAIAARNEIAATQPETEAIPAHTTANVTYVTPPEGVAITNAA  15207

Range 2: 14751 to 15206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 123/152(81%) 0/152(0%) Minus/Minus
Query      443  AVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDAS  898
                A LVI TPSGGVT*+T AV CAG+ SVSG VAA+SFRAAIAS  NS+YFESLKVLYGK+YFRTR ISL*STVPSN IIE TSVGI+SKS+SH+ FFDSNDT TVIKLS GTL WLVPKL   V TSINLVCLFTIEV FSFLSL*KFTID S
Subject  14751  AALVIATPSGGVT*VTFAVVCAGIASVSG*VAAISFRAAIASDKNSRYFESLKVLYGKIYFRTRFISL*STVPSNLIIELTSVGISSKSVSHETFFDSNDTTTVIKLSMGTLIWLVPKLLLLVKTSINLVCLFTIEVNFSFLSL*KFTIDES  15206

Range 3: 14310 to 14705 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.1 bits(557) 0.0 114/132(86%) 0/132(0%) Minus/Minus
Query        2  V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT  397
                V* CSIKFLSR*NLIVC+ MSPSRGSI TLSTPIVSLG DLI TDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQES ++SFGKFLNK K+SPLSPTIGATNAV IVNH C ILH E A VPQNRA HIT
Subject  14310  V*TCSIKFLSR*NLIVCIRMSPSRGSIITLSTPIVSLGIDLIETDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESREASFGKFLNKDKNSPLSPTIGATNAVVIVNHCCPILHLELAGVPQNRASHIT  14705

Range 4: 14311 to 15039 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
374.5 bits(811) 0.0 178/243(73%) 0/243(0%) Minus/Minus
Query        3  RKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY  731
                RKN+LSHA YFL+IN P+K YYRTYFSWYQ +E + *+FLRF  Y DS+QTV+ DFDLASS*A  I   FH*P LLV++RS FFISFTVKIH+*RIHRSTFE+  D SFSLSVDLFY*ILV+IESYSVY DVTVS  YY S++AHRFFG  FNRD +INCVTY KIL*P+ FS+SEEIVIHST VR PR+ G VIR V Q* Q LPLISNNRSH*R  HC S L NIT * R CSSEPS SHY
Subject  14311  RKNILSHAIYFLVINCPIKPYYRTYFSWYQLKECLA*NFLRFQ*YYDSDQTVDGDFDLASS*ATIISKDFH*PSLLVYHRSQFFISFTVKIHD*RIHRSTFEHATDTSFSLSVDLFY*ILVSIESYSVYKDVTVSRFYYNSEYAHRFFGNRFNRDRHINCVTY*KIL*PVCFSNSEEIVIHSTRVR*PRVEGSVIRQVPQ*RQKLPLISNNRSH*RSRHCKSLLSNITP*ARWCSSEPS*SHY  15039

Range 5: 15082 to 15216 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 27/45(60%) 0/45(0%) Minus/Minus
Query      774  LRGSCVSYSHTLWWCHIDYVXXXXXXXXXXXXXXRGGFISCGDRF  908
                ++GS +SYSH+LWWCHI +VR  MRR + CF L RG F+SC +RF
Subject  15082  IKGSRISYSHSLWWCHIGHVRCCMRRYSLCFWLSRGNFVSCCNRF  15216

Range 6: 14748 to 15212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 103/155(66%) 0/155(0%) Plus/Plus
Query      440  GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP  904
                GG VN EFSQ*KK*K DFD +QAD VNGS     *LRN*P+QSP  QFD+C SI+ IEE+ M  TL  DTN*S+FDNKV* D *L GN SRAKV+FSV*DF*RFKV G+   SD  TK N RD+A NR YTGA +  R+LCDTTRG  YN*   P
Subject  14748  GGFVNREFSQ*KK*KIDFDGKQAD*VNGSLY****LRN*PNQSPHRQFDHCRSIIGIEESFMRDTL*ADTN*SKFDNKV*WDS*LQGNKSRAKVYFSV*DF*RFKVPGIFIRSDCSTKRNCRDSARNRGYTGAYNSERDLCDTTRGSGYN*CGSP  15212

Range 7: 14310 to 14609 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 80/100(80%) 0/100(0%) Plus/Plus
Query        2  SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG  301
                SNVTSSVLRNTSELKV*Y TAVI N + VSGSYCWR*GGVF FIE+L E*R PR LA *R SNE*RFLQS RS+ VTKSF+RLHN*C+  D*I SQRNDG
Subject  14310  SNVTSSVLRNTSELKV*YWTAVIYNDDCVSGSYCWR*GGVFVFIEELAE*RFPRLLAT*RGSNE*RFLQSWRSIQVTKSFNRLHN*CVCLD*IDSQRNDG  14609

Range 8: 14658 to 14708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 15/17(88%) 0/17(0%) Plus/Plus
Query      350  HYKILS*QEFNRTNLHS  400
                HYKILS QEFNRT+LHS
Subject  14658  HYKILSRQEFNRTSLHS  14708

Range 9: 14660 to 15199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.5 bits(547) 0.0 127/180(71%) 0/180(0%) Minus/Minus
Query      352  *L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL*  891
                *L*  PLVVSHR R    APV* LF A SR+F FV +SL +  P TLNL*KSYTEK TFAR+LFP NQ S QTLLSNLLQLVS +RV  M  SSI  ILRQ*SNC+ GL* G*FLS  +   LPLT SAC  SKS FHFFHCENS+LT+PPVYF*   * LLFFECR VLLNSC DRIL*
Subject  14660  *L*PLPLVVSHRSRSLLYAPV*PLFLAESRQFRFVLQSLRIKIPGTLNL*KSYTEKYTFARDLFPCNQLSHQTLLSNLLQLVSAQRVSRMKLSSIPMILRQ*SNCRWGL*FG*FLSYYY**RLPLT*SACLPSKSIFHFFHCENSRLTNPPVYF*ARY*HLLFFECRLVLLNSCLDRIL*  15199

Range 10: 14435 to 14611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 46/59(78%) 0/59(0%) Minus/Minus
Query      127  RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIK  303
                RPSFLWE I*SR+ H*LCNL KDFVT  LL L*RNRHSFD R* AK+RG RHS S SIK
Subject  14435  RPSFLWESI*SRQTH*LCNLLKDFVTCMLLQL*RNRHSFDPR*VAKSRGKRHSASSSIK  14611

Range 11: 14309 to 14377 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 23/23(100%) 0/23(0%) Minus/Minus
Query        1  ITAVQYYTLSSLVFLRTELVTLL  69
                ITAVQYYTLSSLVFLRTELVTLL
Subject  14309  ITAVQYYTLSSLVFLRTELVTLL  14377

Range 12: 14414 to 14833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 108/140(77%) 0/140(0%) Plus/Plus
Query      106  EIRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WK  525
                EIRGS  LY* T RMT P  LG LT VE*MTISSE EK  GYKIF+*VTQLM  SRLN FPKKRWA  E **+ ETVTS YTL*DSI TRI**NKSTLKEKE S   SKVDRW+RQ *IFTVKEMK *LR *TSR G*WK
Subject  14414  EIRGSFCLY*GTCRMTLPSTLGYLTRVE*MTISSELEKHTGYKIFQ*VTQLMCLSRLNRFPKKRWAYSEL**NRETVTSLYTL*DSIETRI**NKSTLKEKEVSVACSKVDRWIRQS*IFTVKEMKN*LRW*TSRLG*WK  14833

Range 13: 14906 to 15214 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 69/103(67%) 0/103(0%) Plus/Plus
Query      598  YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL  906
                Y  NRRK H  +S +*YQLK*VR** L G LI RK* ACES FFRIRLLEIQS G++  KR  HE K PR S KQ+L+RRI++RT* M*HHQR  L*L +LPL
Subject  14906  YHWNRRKFHARHSLS*YQLK*VR**GLMGQLITRK*IACESIFFRIRLLEIQSTGNFYPKRLQHETKLPRLSQKQRLYRRIQQRT*PM*HHQREWL*LMRLPL  15214

Range 14: 14309 to 14377 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 17/23(74%) 0/23(0%) Plus/Plus
Query        1  K*CDELGSEEH*RTQSVILNSGD  69
                K*CD LGSEEH R Q VIL+S D
Subject  14309  K*CD*LGSEEHQRAQGVILDSSD  14377

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 14

Range 1: 14050 to 14946 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
589.4 bits(1280) 0.0 253/299(85%) 0/299(0%) Plus/Plus
Query        3  VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTA  899
                VM*+ARF*GT A+S+CNI Q+* TM TALVAPIVGDKGE L+LLRNLPND S DSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGDI+IHTIRFYRDKNLIEQ+YTQRKGGVS VLKSRPVD+SIVNFHSER EK+TS+VNKQTRLMEV TN SSLGTSQ+KVP+DSLITV+VSLESKK+SC+ LFELIPTEV SII+FDGTVDYKEI R RKYIFPYKTFRDSKY E L EAIAARNE AATQPETE  P H TA+V YVTPPEGV ITN A
Subject  14050  VM*QARF*GTPASSRCNIGQQ*FTMTTALVAPIVGDKGEFLSLLRNLPNDASLDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDILIHTIRFYRDKNLIEQVYTQRKGGVSSVLKSRPVDSSIVNFHSERYEKLTSMVNKQTRLMEVFTNNSSLGTSQIKVPIDSLITVVVSLESKKVSCETLFELIPTEVSSIIRFDGTVDYKEINRERKYIFPYKTFRDSKYREFLTEAIAARNEIAATQPETEAKPVHTTANVTYVTPPEGVAITNAA  14946

Range 2: 14490 to 14945 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 120/152(79%) 0/152(0%) Minus/Minus
Query      443  AVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDAS  898
                A LVI TPSGGVT*+T AV C G+ SVSG VAA+SFRAAIAS  NS+YFESLKVLYGK+YFR+R ISL*STVPSN IIE TSVGI+SKS+SH+ FFDSNDT TVIKLS GTL WLVPKL   V TSINLVCLFTIEV FS+LSL*KFTID S
Subject  14490  AALVIATPSGGVT*VTFAVVCTGLASVSG*VAAISFRAAIASVKNSRYFESLKVLYGKIYFRSRFISL*STVPSNLIIELTSVGISSKSVSHETFFDSNDTTTVIKLSMGTLIWLVPKLLLLVKTSINLVCLFTIEVNFSYLSL*KFTIDES  14945

Range 3: 14049 to 14444 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
257.2 bits(555) 0.0 114/132(86%) 0/132(0%) Minus/Minus
Query        2  V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT  397
                V* CSIKFLSR*NLIVC+ MSPSRGSI TLSTPIVSLG DLI TDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQES ++SFGKFLNK K+SPLSPTIGATNAV IVNH C ILH E A VPQNRA HIT
Subject  14049  V*TCSIKFLSR*NLIVCIRMSPSRGSIITLSTPIVSLGIDLIETDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESREASFGKFLNKDKNSPLSPTIGATNAVVIVNHCCPILHLELAGVPQNRACHIT  14444

Range 4: 14050 to 14778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
367.6 bits(796) 0.0 178/243(73%) 0/243(0%) Minus/Minus
Query        3  RKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY  731
                RK++L  A YFL+IN P+K YYRTYFSWYQ +E   *+FLRF  Y DS+QTV+ DFDLASS*A  I   FH*P LLV++RS FFISFTVKIH *RIHRSTFE+  D SFSLSVDLFY*ILVTIESYSVY DVTVS  YY S++AHRFFG  FNRD +INCVTY KIL*PI FS+SEEIVIHST VR PRI G VIR V Q* Q LPLISNNRSH*R  HC S L NIT * R CSSEPS SHY
Subject  14050  RKDILPFAIYFLVINRPIKPYYRTYFSWYQLKECFA*NFLRFQ*YYDSDQTVDGDFDLASS*ATIISKDFH*PSLLVYHRSQFFISFTVKIHY*RIHRSTFEHATDTSFSLSVDLFY*ILVTIESYSVYKDVTVSRFYYNSEYAHRFFGNRFNRDRHINCVTY*KIL*PICFSNSEEIVIHSTRVR*PRIEGSVIRQVPQ*RQKLPLISNNRSH*RSRHCKSLLSNITP*ARWCSSEPSLSHY  14778

Range 5: 14824 to 14955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 26/44(59%) 0/44(0%) Minus/Minus
Query      777  LRGSCVSYSHTLWWCHIDYVXXXXXXXXXXXXXXRGGFISCGDR  908
                ++GS +SYSH+LWWCHI +VR  M R   CF L RG F+SC DR
Subject  14824  IKGSRISYSHSLWWCHIGHVRCCMHRFGLCFWLSRGNFVSCCDR  14955

Range 6: 14399 to 14938 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.3 bits(540) 0.0 125/180(69%) 0/180(0%) Minus/Minus
Query      352  *L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL*  891
                *L*  PLVVSHR R    APV  LF A SR+F FV RS  L TP TLNL*KSYTE+ T  R+LFP NQ S QTLLSNLLQLVS +RV+ M  SSI  ILRQ*SNC+ GL* G*FLS  +   LPLT SAC  SKS FH FHCENS LT+PPVYF*   * LLFFECR VLLNSCHDRIL*
Subject  14399  *L*PLPLVVSHRSRSLLYAPVWPLFLAESRQFRFVLRSPQLKTPGTLNL*KSYTERYTSVRDLFPCNQPSHQTLLSNLLQLVSAQRVFRMKLSSIPMILRQ*SNCRWGL*FG*FLSYYY**RLPLT*SACLPSKSIFHIFHCENSLLTNPPVYF*ARY*HLLFFECRLVLLNSCHDRIL*  14938

Range 7: 14174 to 14350 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 48/59(81%) 0/59(0%) Minus/Minus
Query      127  RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIK  303
                RPSFLWE I*SR+ H*LCNL KDFVTY LL L*RNRHSFD R* AKNRG RHS S SIK
Subject  14174  RPSFLWESI*SRQTH*LCNLLKDFVTYMLLQL*RNRHSFDPR*VAKNRGKRHSASSSIK  14350

Range 8: 14048 to 14116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 23/23(100%) 0/23(0%) Minus/Minus
Query        1  ITAVQYYTLSSLVFLRTELVTLL  69
                ITAVQYYTLSSLVFLRTELVTLL
Subject  14048  ITAVQYYTLSSLVFLRTELVTLL  14116

Range 9: 14487 to 14951 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 100/155(65%) 0/155(0%) Plus/Plus
Query      440  GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP  904
                GG VN EFSQ*K *K DFD +QAD VNGS     *LRN*P+QSP  QFD+C SI+ IEE+ M  TL  DTN*S+FDNKV* D *L GN SR +V+ SV*DF*RFKV GV  * DR TK N RD+A NR  TGA +  R+LCDTTRG  YN*   P
Subject  14487  GGFVNSEFSQ*KI*KIDFDGKQAD*VNGSLY****LRN*PNQSPHRQFDHCRSIIGIEESFMRNTL*ADTN*SKFDNKV*WDG*LQGNKSRTEVYLSV*DF*RFKVPGVFN*GDRSTKRNCRDSARNRGQTGAYNSERDLCDTTRGSGYN*CGSP  14951

Range 10: 14049 to 14348 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 82/100(82%) 0/100(0%) Plus/Plus
Query        2  SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG  301
                SNVTSSVLRNTSELKV*Y TAVI N + VSGSYCWR*GGVF FIE+L E*R PRFLA *R SNE*RFLQS RS+*VTKSF+RLHN*C+  D*I SQRNDG
Subject  14049  SNVTSSVLRNTSELKV*YWTAVIYNDDCVSGSYCWR*GGVFVFIEELAE*RFPRFLAT*RGSNE*RFLQSWRSI*VTKSFNRLHN*CVCLD*IDSQRNDG  14348

Range 11: 14397 to 14447 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 16/17(94%) 0/17(0%) Plus/Plus
Query      350  HYKILS*QEFNRTNLHS  400
                HYKILS*QEFNRT+LHS
Subject  14397  HYKILS*QEFNRTSLHS  14447

Range 12: 14153 to 14572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.3 bits(468) 0.0 110/140(79%) 0/140(0%) Plus/Plus
Query      106  EIRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WK  525
                EIRGS  LY* T RMT P ILG LT VE*MTISSE EK IGYKIF+*VTQLM  SRLN FPKKRWA  E **+ ETVTS YTL*DSIVTRI**NKSTLKEKE S   SKVDRW+RQ *IFTVK+MK *LR *TSR G*WK
Subject  14153  EIRGSFCLY*GTCRMTLPSILGYLTRVE*MTISSELEKHIGYKIFQ*VTQLMCLSRLNRFPKKRWAYSEL**NRETVTSLYTL*DSIVTRI**NKSTLKEKEVSVACSKVDRWIRQ**IFTVKDMKN*LRW*TSRLG*WK  14572

Range 13: 14645 to 14953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 66/103(64%) 0/103(0%) Plus/Plus
Query      598  YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL  906
                Y  NRRK H  +S +*YQLK*VR** L G LI RK* A  S  FRIRLLEIQS GS+*++RS HE K PR S KQ+ +R I++RT* M*HHQR  L*L +LPL
Subject  14645  YHWNRRKFHAKHSLS*YQLK*VR**GLMGRLITRK*IANGSISFRIRLLEIQSTGSF*LRRSQHETKLPRLSQKQRPNRCIQQRT*PM*HHQREWL*LMRLPL  14953

Range 14: 14048 to 14116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 17/23(74%) 0/23(0%) Plus/Plus
Query        1  K*CDELGSEEH*RTQSVILNSGD  69
                K*CD+LGSEEH R Q VIL+S D
Subject  14048  K*CDKLGSEEHQRAQGVILDSSD  14116

Nucleotide Sequence (646 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
65
130
195
260
325
390
455
520
585
646

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7

Range 1: 3989 to 4603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.5 bits(656) 0.0 127/205(62%) 0/205(0%) Plus/Plus
Query        9  NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ  623
                +KSS+L  GGGL+L+AS++AFRRQ+  +A G  + VR+S+  +K K+VLGL ++K+  G  +R A+   QGSV+++K +A AE  +RV+ +  E+GYIYGDSLNVQTVCLTA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++  E  RA KL G+A  LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ +
Subject   3989  SKSSLLMFGGGLLLMASMLAFRRQILNRAHGLAQGVRTSLKKTKGKLVLGLSDLKERLGSVRRNAVVSAQGSVRSLKVVARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE  4603

Range 2: 3985 to 4593 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.5 bits(525) 0.0 120/203(59%) 0/203(0%) Minus/Minus
Query        5  CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ  613
                C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK  A P NF AL +S  L H  AA P PTLP+YLNR G    RIADFS* DD+ A AVRHTV*TF+ESP*MYPIS     TRSL SA A+ F   TDP*    AFL   P L F   +PNT+       E RT   NP*A  K   R A +EAIS RPPP  + DDL +
Subject   3985  CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALATTFNERTDP*AETTAFLLTLPSLSFKSLRPNTSLPFVFFKEVRTPCANP*ALFKIWRRKASMEAISNRPPPNISNDDLLR  4593

Range 3: 3986 to 4594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 78/203(38%) 0/203(0%) Minus/Minus
Query        6  LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP  614
                LP++  +  IH+PTLRE NLQ G    TFL  QRQ   Y  Q + P  L   +T Q RY +++ P +P+PL R   K+  FL+AR  I    K H LNVQR+ V+VP     SR+ +        L   H SLS  D  P   PE+L  +AQT*H    R      D    P+S  +NL  +    S+Q  TS   *  R  P
Subject   3986  LPVEASNALIHVPTLREHNLQAGCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPRYHLQ*TH*SLSRNDGIPSYTPESLFQVAQT*HQLTFRLFQGGADTLR*PMSSVQNLAPKSEHGSHQ**TSPEH*QRRLTP  4594

Range 4: 4264 to 4599 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 47/112(42%) 0/112(0%) Plus/Plus
Query      284  G*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA  619
                G + VHLR   ERSD V Y +R+ ++ L EI       A AV V+ E  +  SG E+ Q     QG E+   S   G D KERC    Q A+ VPEAWG V*     L AA+
Subject   4264  GRDGVHLRRLVERSDRVPYGRRISIIEL*EIGDSYITRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*GSQLADCVPEAWGRV*GRY*LLQAAS  4599

Range 5: 4131 to 4208 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 14/26(54%) 0/26(0%) Plus/Plus
Query      151  C*VWAI*RRVSGSQRGKRSNVLRDRC  228
                C*V A *+R SG   G  S  LRD+C
Subject   4131  C*V*AT*KRDSGV*EGMPSFRLRDQC  4208

Range 6: 4491 to 4604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 19/38(50%) 0/38(0%) Plus/Plus
Query      511  WR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK  624
                WR* +RKV    P C+ CSRSVG CM+      GS  K
Subject   4491  WR*LQRKVQVGQPACRLCSRSVGTCMRALLASTGSEQK  4604

Range 7: 4275 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 15/27(56%) 0/27(0%) Plus/Plus
Query      295  GTSTGIR*TFRQCVLQQALICRRATRN  375
                GT T  R*TFR C L+   I  RA RN
Subject   4275  GTFTATR*TFRPCALRPPHIYHRAMRN  4355

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7

Range 1: 3989 to 4603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.5 bits(656) 0.0 127/205(62%) 0/205(0%) Plus/Plus
Query        9  NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ  623
                +KSS+L  GGGL+L+AS++AFRRQ+  +A G  + VR+S+  +K K+VLGL ++K+  G  +R A+   QGSV+++K +A AE  +RV+ +  E+GYIYGDSLNVQTVCLTA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++  E  RA KL G+A  LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ +
Subject   3989  SKSSLLMFGGGLLLMASMLAFRRQILNRAHGLAQGVRTSLKKTKGKLVLGLSDLKERLGSVRRNAVVSAQGSVRSLKVVARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE  4603

Range 2: 3985 to 4593 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.5 bits(525) 0.0 120/203(59%) 0/203(0%) Minus/Minus
Query        5  CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ  613
                C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK  A P NF AL +S  L H  AA P PTLP+YLNR G    RIADFS* DD+ A AVRHTV*TF+ESP*MYPIS     TRSL SA A+ F   TDP*    AFL   P L F   +PNT+       E RT   NP*A  K   R A +EAIS RPPP  + DDL +
Subject   3985  CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALATTFNERTDP*AETTAFLLTLPSLSFKSLRPNTSLPFVFFKEVRTPCANP*ALFKIWRRKASMEAISNRPPPNISNDDLLR  4593

Range 3: 3986 to 4594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 78/203(38%) 0/203(0%) Minus/Minus
Query        6  LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP  614
                LP++  +  IH+PTLRE NLQ G    TFL  QRQ   Y  Q + P  L   +T Q RY +++ P +P+PL R   K+  FL+AR  I    K H LNVQR+ V+VP     SR+ +        L   H SLS  D  P   PE+L  +AQT*H    R      D    P+S  +NL  +    S+Q  TS   *  R  P
Subject   3986  LPVEASNALIHVPTLREHNLQAGCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPRYHLQ*TH*SLSRNDGIPSYTPESLFQVAQT*HQLTFRLFQGGADTLR*PMSSVQNLAPKSEHGSHQ**TSPEH*QRRLTP  4594

Range 4: 4264 to 4599 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 47/112(42%) 0/112(0%) Plus/Plus
Query      284  G*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA  619
                G + VHLR   ERSD V Y +R+ ++ L EI       A AV V+ E  +  SG E+ Q     QG E+   S   G D KERC    Q A+ VPEAWG V*     L AA+
Subject   4264  GRDGVHLRRLVERSDRVPYGRRISIIEL*EIGDSYITRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*GSQLADCVPEAWGRV*GRY*LLQAAS  4599

Range 5: 4131 to 4208 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 14/26(54%) 0/26(0%) Plus/Plus
Query      151  C*VWAI*RRVSGSQRGKRSNVLRDRC  228
                C*V A *+R SG   G  S  LRD+C
Subject   4131  C*V*AT*KRDSGV*EGMPSFRLRDQC  4208

Range 6: 4491 to 4604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 19/38(50%) 0/38(0%) Plus/Plus
Query      511  WR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK  624
                WR* +RKV    P C+ CSRSVG CM+      GS  K
Subject   4491  WR*LQRKVQVGQPACRLCSRSVGTCMRALLASTGSEQK  4604

Range 7: 4275 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 15/27(56%) 0/27(0%) Plus/Plus
Query      295  GTSTGIR*TFRQCVLQQALICRRATRN  375
                GT T  R*TFR C L+   I  RA RN
Subject   4275  GTFTATR*TFRPCALRPPHIYHRAMRN  4355

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 10

Range 1: 4130 to 4744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.7 bits(639) 0.0 126/205(61%) 0/205(0%) Plus/Plus
Query        9  NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ  623
                +K+S+L  GGGL+L+AS+ AFRRQ+  KA G  + VR+S+  +K K+VLGLG++K   G  +R A+   Q S +++K +A AE  +RV+ +  E+GYIYGDSLNVQTVC TA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+ ++  E  RALKL G+A  LALT KKGVSRAA+LQI+FPKRGDVYEGVT FYRQ+ +
Subject   4130  SKTSLLVFGGGLLLMASMFAFRRQILNKAHGLAQGVRTSLDKTKGKLVLGLGDLKARLGRVRRNAVVSAQVSARSLKVIARAEFKDRVSGYVEEMGYIYGDSLNVQTVCFTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRYIKGGEYGRALKLMGVAACLALTAKKGVSRAASLQIVFPKRGDVYEGVTTFYRQRAE  4744

Range 2: 4126 to 4734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.8 bits(504) 0.0 115/203(57%) 0/203(0%) Minus/Minus
Query        5  CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ  613
                C *K+VTPSYTSPRFGN IC+LAALLTPFF V+AK  A P NF AL +S  L +  AA P PTLP+YLNR G    RIADFS* DD+ A AV+HTV*TF+ESP MYPIS     TRSL SA A  F    D *    AFL   P L F  P+PNT+     + E RT   NP*A  K   R A +EAIS RPPP  + D L +
Subject   4126  CL*KVVTPSYTSPRFGNTICKLAALLTPFFAVNAKHAATPINFKALPYSPPLIYLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVKHTV*TFNESPYMYPISSTYPDTRSLNSALAMTFNERADT*AETTAFLLTLPSLAFKSPRPNTSLPFVLSREVRTPCANP*ALFKIWRRKANMEAISNRPPPNTSNDVLLR  4734

Range 3: 4385 to 4735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 54/117(46%) 0/117(0%) Minus/Minus
Query      264  LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTL  614
                LP++  +  IH+PTLRE +LQ G    TFL  QRQ  RY  Q Q P  L   +  Q RY I++ P +P+PL R   ++  FL+AR  I  C KTH LNVQRI V VP     SR+T+
Subject   4385  LPVEGSNALIHVPTLREHDLQAGSPTYTFLCGQRQTRRYAHQFQSPAILAPFDIPQCRYPISDAPYIPEPLRRK*YENR*FLIAR**ICGCRKTHSLNVQRIAVYVPHLLHVSRHTI  4735

Range 4: 4157 to 4339 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 22/61(36%) 0/61(0%) Minus/Minus
Query       36  LSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTS  218
                LS  D  P   PE+   +AQT*H F      R  D    P+S  +NL  +    S+Q  TS
Subject   4157  LSRNDSIPSYPPESRFQVAQT*HQFTFCLIQRGADTLR*PVSFVQNLAPKSEHGSHQQ*TS  4339

Range 5: 4273 to 4740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 66/156(42%) 0/156(0%) Plus/Plus
Query      152  VRFGQYEEEFRGVKEESDQMYSGIGANYEGARRGRDE*ACCGFFG*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA  619
                VR G+ E E R  K+E  +  SGI A  EG   G    +C    G + VH+R F ERSD V Y  R+ ++ L EI       A AV V+ E  +W SG E+ Q     QG E+   SG  G DRKERC    Q A+ VPEAWG V*     L AA+
Subject   4273  VRSGRLESETREGKKECCRFGSGISAFIEGHSEG*I*RSCVWIRGGDGVHIRRFVERSDCVFYGSRISIIEL*EISDSRITCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GCQLADRVPEAWGRV*GRYYLLQAAS  4740

Range 6: 4596 to 4745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 23/50(46%) 0/50(0%) Plus/Plus
Query      475  SGR*SCLV*R*PWR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK  624
                +G *+   *R  WR* +RKV    P C+ CSRSVG CM+      GS  K
Subject   4596  AGL*N*WA*RRVWR*PQRKV*VGLPACRSCSRSVGTCMRALLPSTGSEQK  4745

Range 7: 4416 to 4496 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 18/27(67%) 0/27(0%) Plus/Plus
Query      295  GTSTGIR*TFRQCVLQQALICRRATRN  375
                GT T IR*TFR CVL+Q  I  RA RN
Subject   4416  GTYTAIR*TFRLCVLRQPHIYHRAMRN  4496

Range 8: 4128 to 4340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 26/71(37%) 0/71(0%) Plus/Plus
Query        7  GINRQC*P*AEVLY**LRSLRSEGRFL*RLKGLCVKSVLLWHFLRRKSC*VWAI*RRVSGSQRGKRSNVLR  219
                G+ R+ *   EV  * L       +F  +L G    S  LW   +   C*VWA *+R SG   G  S  LR
Subject   4128  GVRRRY*CSGEVYC*WLPCSLFGAKF*TKLTG*RKVSAPLWIRQKVNWC*VWAT*KRDSGG*EGMLSFRLR  4340

Range 9: 4620 to 4709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/30(57%) 0/30(0%) Minus/Minus
Query      499  HTHPHASGTKFAGWRLC*HLSFLSAPRLPL  588
                HT PHASGT+ A W+   HLS  S P  PL
Subject   4620  HTRPHASGTRSASWQPYLHLSLRSTPNTPL  4709

Range 10: 4335 to 4496 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 24/54(44%) 0/54(0%) Minus/Minus
Query      214  ISRSTTTNKRLL*DTLSERSANPRRCTRFHPKKPQHAHSSRPRRAPS*FAPIPE  375
                IS S+  + RL *+T SERS N R CT   P+   H    +P   PS  A IPE
Subject   4335  ISHSSMIDMRLP*NTQSERSTNRRICTPSPPRIQTHDL*IQPSL*PSMNALIPE  4496

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 9

Range 1: 4065 to 4679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
294.3 bits(636) 0.0 124/205(60%) 0/205(0%) Plus/Plus
Query        9  NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ  623
                +KSS+L  GGGL+L+AS+ AFRR++  KA G  + V +S+  ++ K+VLGLG++K   G  +R A+   Q SV+++K +A AE  +RV+ +  E+GYIYGDSLNVQTVCLTA+AYLSS YEKSA L+LL PKRFRYIGSVGYG+AAL+C++  E  RA KL G+A  LALT KKGVSRAA+LQI+FPKRGDVYEG+T FYRQ+ +
Subject   4065  SKSSLLVFGGGLLLMASMFAFRRRILNKAHGLAQGVCTSLEKTRGKLVLGLGDLKARLGRVRRNAVVSAQVSVRSLKVIARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAFLVLLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGVSRAASLQIVFPKRGDVYEGITTFYRQRAE  4679

Range 2: 4061 to 4669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.5 bits(512) 0.0 117/203(58%) 0/203(0%) Minus/Minus
Query        5  CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ  613
                C *K+V PSYTSPRFGN IC+LAALLTPFF V+AK  A P NF AL +S  L H  AA P PTLP+YLNR G    R ADFS* DD+ A AVRHTV*TF+ESP MYPIS     TRSL SA A  F   TD *    AFL   P L F  P+PNT+  L  + E +T   NP*A  K   R A +EAIS RPPP  + DDL +
Subject   4061  CL*KVVMPSYTSPRFGNTICKLAALLTPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNTRNADFS*LDDRYAAAVRHTV*TFNESPYMYPISSTYPDTRSLNSALAITFKERTDT*AETTAFLLTLPSLAFKSPRPNTSLPLVFSREVQTPCANP*ALFKIRRRKANMEAISNRPPPNTSNDDLLR  4669

Range 3: 4062 to 4670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 80/203(39%) 0/203(0%) Minus/Minus
Query        6  LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP  614
                LP++  +  IH+PTLRE +LQ G    TFL  QRQ  RY  Q + P  L   +T Q RY I++ P +P+PL R   K   FL+AR  I  C K H LNVQRI V VP     SR+T+        L   H  LS  D  P   PE+   +AQT*H F      R  D    P+S  +N   +    S+Q  TS   *  R  P
Subject   4062  LPVEGSNALIHVPTLREHDLQAGSPTYTFLCGQRQTRRYAHQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRE*YKKR*FLIAR**ICGCRKAHGLNVQRIAVYVPHLLHVSRHTIFKFSPRYHLQRTH*YLSRNDSIPSYPPESRFQVAQT*HQFTSCLFQRGADTLR*PVSFVQNSAPKSEHGSHQQ*TSPEH*QRRLTP  4670

Range 4: 4208 to 4675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 66/156(42%) 0/156(0%) Plus/Plus
Query      152  VRFGQYEEEFRGVKEESDQMYSGIGANYEGARRGRDE*ACCGFFG*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA  619
                VR G+ E E R  K+E  +  SGI A +EG   G    +C    G + VH+R F ERSD V Y  R+ ++ L EI       A AV V+ E  +W SG E+ Q     QG E+   SG  G DRKERC    Q A+ VPEAWG V*     L AA+
Subject   4208  VRSGRLESETREGKKECCRFGSGISAFFEGDSEG*I*RSCVWIRGGDGVHIRRFVERSDRVPYGSRISIIEL*EISVSCITRA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GCQLADRVPEAWGRV*GHYYLLQAAS  4675

Range 5: 4270 to 4506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 34/79(43%) 0/79(0%) Minus/Minus
Query      214  SKPLHHNQHSQCT*TALALREEG*RISRSTTTNKRLL*DTLSERSANPRRCTRFHPKKPQHAHSSRPRRAPS*FAPIPE  450
                S PL H + S  T*TA A   +   IS S+  + RL * T SERS N R CT   P+   H    +P  +PS  A IPE
Subject   4270  SMPLSHIRRSLYT*TA*ARVIQETLISHSSMIDMRLP*GTRSERSTNRRICTPSPPRIQTHDL*IQPSLSPSKNALIPE  4506

Range 6: 4555 to 4644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/30(57%) 0/30(0%) Minus/Minus
Query      499  HTHPHASGTKFAGWRLC*HLSFLSAPRLPL  588
                HT PHASGT+ A W+   HLS  S P  PL
Subject   4555  HTRPHASGTRSASWQPYLHLSLRSTPNTPL  4644

Range 7: 4567 to 4680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 19/38(50%) 0/38(0%) Plus/Plus
Query      511  WR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK  624
                WR* +RKV    P C+ CSRSVG CM+      GS  K
Subject   4567  WR*PQRKV*VGLPACRSCSRSVGTCMRALLPSTGSEQK  4680

Range 8: 4351 to 4431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 17/27(63%) 0/27(0%) Plus/Plus
Query      295  GTSTGIR*TFRQCVLQQALICRRATRN  375
                GT T IR*TFR C L+Q  I  RA RN
Subject   4351  GTYTAIR*TFRPCALRQPHIYHRAMRN  4431

Range 9: 4063 to 4284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 28/74(38%) 0/74(0%) Plus/Plus
Query        7  GINRQC*P*AEVLY**LRSLRSEGRFL*RLKGLCVKSVLLWHFLRRKSC*VWAI*RRVSGSQRGKRSNVLRDRC  228
                G++R+C*   EV  * L        F  +L G    S  LW       C*VWA *+R SG   G  S  LR +C
Subject   4063  GVSRRC*CSGEVYC*WLPCSLFGAEF*TKLTG*RKVSAPLWKRQEVNWC*VWAT*KRDSGG*EGMLSFRLRYQC  4284

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 8

Range 1: 264 to 878 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
280.6 bits(606) 0.0 121/205(59%) 0/205(0%) Plus/Plus
Query        9  NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ  623
                +KSS+L  GGGL+L+AS+ AFRRQ+  KA G  + VR+S        VLGL ++K   G  +R A+   Q SV++MK     E  +RV+ +  E+GYIYGDSLNVQTVCL  +AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++  E  RA KL G+   LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ +
Subject    264  SKSSLLVFGGGLLLMASMFAFRRQILNKANGLAQGVRTSXXXXXXXXVLGLSDLKVRLGSXRRNAVVSAQESVRSMKVXXXXEFKDRVSGYVEEMGYIYGDSLNVQTVCLXXAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLIGVXXCLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE  878

Range 2: 260 to 868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.3 bits(492) 0.0 114/203(56%) 0/203(0%) Minus/Minus
Query        5  CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ  613
                C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK    P NF AL +S  L H  AA P PTLP+YLNR G    RIADFS* DD+ A   RHTV*TF+ESP*MYPIS     TRSL S     FI  TD *    AFL   P L F   +PNT        E RT   NP A  K   R A +EAIS RPPP  + DDL +
Subject    260  CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHXXTPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAXXRHTV*TFNESP*MYPISSTYPDTRSLNSXXXXTFIERTDS*AETTAFLLXLPSLTFKSLRPNTXXXXXXXXEVRTPCANPLALFKIWRRKANMEAISNRPPPNTSNDDLLR  868

Range 3: 291 to 869 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 74/193(38%) 0/193(0%) Minus/Minus
Query       36  LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTS  614
                LP++  +T IH+PTLRE +LQ G    TFL  QRQ      Q + P  L   +T Q RY I++ P +P+PL R   K+  FL+ARR I    K H LNVQRI V+V      SR+T+        LH  H  LS  D  P   PE+   +AQT H           D    P+S  +NL  +    S+Q  TS
Subject    291  LPVEASNTLIHVPTLREHDLQAGSPTCTFLCGQRQTXXXAYQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRK*YKNRRFLIARR*ICGXXKAHSLNVQRIAVNVSHLFHVSRHTIFKFXXXXHLH*TH*FLSRNDSIPSXTPESHFQVAQTQHXXXXXXXXGGADTLR*PISFVQNLAPKSEHGSHQQ*TS  869

Range 4: 425 to 874 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 61/150(41%) 0/150(0%) Plus/Plus
Query      170  EEEFRGVKEESDQMYSGIGANYEGARRGRDE*ACCGFFG*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA  619
                E E R  K+E  +  SGI A  EG        +C    G + +HLR F ERSD V    R+ +V L EI       A AV V+ E  +W SG E+ Q     QG E+       G DRKERC    Q A+ VPEAWG V* C   L AA+
Subject    425  ESETREXKKECCRFGSGISAFNEGXXXXXI*RSCVWIRGRDGIHLRRFVERSDCVPXXXRISIVEL*EICDSYITCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDRRXXVFGVDRKERCK*GCQLADRVPEAWGRV*GCY*LLQAAS  874

Range 5: 766 to 879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/38(53%) 0/38(0%) Plus/Plus
Query      511  WR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK  624
                WR* +RKV    P C+ CSRSVG CM+V     GS  K
Subject    766  WR*PQRKVQVGLPACRSCSRSVGTCMRVLLASTGSEQK  879

Range 6: 553 to 630 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 15/26(58%) 0/26(0%) Plus/Plus
Query      298  TSTGIR*TFRQCVLQQALICRRATRN  375
                T T IR*TFR C      I RRA RN
Subject    553  TFTAIR*TFRLCAXXXPHIYRRAMRN  630

Range 7: 766 to 879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 19/38(50%) 0/38(0%) Minus/Minus
Query      511  FGAAADKNWSHLHTHPHASGTKFAGWRLC*HLSFLSAP  624
                F  AA ++  H HT PHASGT+ A W+   HLS  S P
Subject    766  FLLAACRS**HPHTRPHASGTRSASWQPYLHLSLRSTP  879

Range 8: 469 to 633 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 21/55(38%) 0/55(0%) Minus/Minus
Query      214  RISRSTTTNKRLL*DTLSERSANPRRCTRFHPKKPQHAHSSRPRRAPS*FAPIPE  378
                +IS S+T + R    T SERS N R+C    P+   H         PS  A IPE
Subject    469  QISHSSTIDMRXXXGTQSERSTNRRKCIPSLPRIQTHDL*IXXXXXPSLNALIPE  633

Nucleotide Sequence (567 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
567

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 10

Range 1: 6689 to 7234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
404.7 bits(877) 0.0 165/182(91%) 0/182(0%) Minus/Plus
Query        1  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI  546
                IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI
Subject   6689  IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI  7234

Range 2: 6688 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
312.2 bits(675) 0.0 153/180(85%) 0/180(0%) Plus/Minus
Query        8  GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM  547
                G REKIGSSAFFNLT TTS  VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SSANST SLGVTNVFSL +NGI FLSPY  TSFTPI TTVN*N+PLC+IYTSS+
Subject   6688  GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSI  7227

Range 3: 6767 to 7000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 40/78(51%) 0/78(0%) Plus/Minus
Query      235  HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV  468
                HL +RA RS +P+R H+IR+Q   S ISHR   +T ISRAPV*N+ +L+ L  +F+ F+R DKRLF + +  L+LI+V
Subject   6767  HLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YVTYISRAPV*NVSVLNQLFREFYGFIRRDKRLFPVDKWYLILISV  7000

Range 4: 7043 to 7234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 34/64(53%) 0/64(0%) Plus/Minus
Query        1  DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH  192
                +M LPR+DRI  LLQ +  +I++ LALRFM   HI P    R  HLR + LHF  FILSHC V+
Subject   7043  NMRLPREDRIICLLQSYQYNITIRLALRFMRR*HIWPLFSSRNFHLRNNPLHFCFFILSHCQVN  7234

Range 5: 6689 to 6727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 10/13(77%) 0/13(0%) Plus/Minus
Query      508  LKHALVQHIHLID  546
                LKH+L+QHIH ID
Subject   6689  LKHSLMQHIHFID  6727

Range 6: 6850 to 7233 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 65/128(51%) 0/128(0%) Minus/Plus
Query        2  ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY  385
                AD V+  FIQVP *C+L  ++DD*+AR  +V EW V * G++T  LF +GA  +S G FT+*SGC+ +NDSE*K  NAE C EDG  G + +A C ++ *SARQD+  C   ++EEG  S L A  +Y
Subject   6850  AD*VH*HFIQVPC*CMLRIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFTV*SGCLPDNDSE*KSRNAEGCCEDGNCGWKKEARCVNDA*SARQDVW*CCIGKIEEGR*SDLLAEASY  7233

Range 7: 6690 to 6728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 9/13(69%) 0/13(0%) Minus/Plus
Query      507  SMRCICCTRACFN  545
                SM+CICC R CF+
Subject   6690  SMKCICCIRECFS  6728

Range 8: 6768 to 7232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 82/155(53%) 0/155(0%) Minus/Plus
Query        3  TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI  467
                T IR R+     KRRLS L    N + S  S   FHTGA LM+V    R*LI E   C RM C L G  DL AL +RC  +L R LY MKRM T*Q*LRMK++KCR L RRW  R    G+MC*+ MKRKAR   M   * *RR  I S RG+ I
Subject   6768  TEIRIRYHLSTGKRRLSRLMKP*NSRKS*LSTLTFHTGALLMYVTYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLYCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLEKRGQMC*RRMKRKARRMVMLYW*D*RRQMIRSSRGSLI  7232

Range 9: 6768 to 7082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 55/105(52%) 0/105(0%) Plus/Minus
Query      153  AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR  467
                AF  FHSESL   HPLH VK P E + AP +KS +V  P * T HS T   LA QSS    N HQ GTCMK + T+SA  +I ++ * *QTSF   *  S SY R
Subject   6768  AFLLFHSESLSGKHPLHTVKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIRNIHQQGTCMKCQCTQSALPRILRLH*A*QTSFPC**MVSDSYLR  7082

Range 10: 7125 to 7232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 16/36(44%) 0/36(0%) Plus/Minus
Query        3  YVVAAKR*DLQPSSTSLGRHLCRSCLALHVLSAHPA  110
                Y  +A+R D  PSS    +H   SCLALH    H A
Subject   7125  YEASARRSDHLPSSILPIQHHHTSCLALHASLTHLA  7232

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 10

Range 1: 6689 to 7234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
404.7 bits(877) 0.0 165/182(91%) 0/182(0%) Minus/Plus
Query        1  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI  546
                IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI
Subject   6689  IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI  7234

Range 2: 6688 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
312.2 bits(675) 0.0 153/180(85%) 0/180(0%) Plus/Minus
Query        8  GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM  547
                G REKIGSSAFFNLT TTS  VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SSANST SLGVTNVFSL +NGI FLSPY  TSFTPI TTVN*N+PLC+IYTSS+
Subject   6688  GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSI  7227

Range 3: 6767 to 7000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 40/78(51%) 0/78(0%) Plus/Minus
Query      235  HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV  468
                HL +RA RS +P+R H+IR+Q   S ISHR   +T ISRAPV*N+ +L+ L  +F+ F+R DKRLF + +  L+LI+V
Subject   6767  HLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YVTYISRAPV*NVSVLNQLFREFYGFIRRDKRLFPVDKWYLILISV  7000

Range 4: 7043 to 7234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 34/64(53%) 0/64(0%) Plus/Minus
Query        1  DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH  192
                +M LPR+DRI  LLQ +  +I++ LALRFM   HI P    R  HLR + LHF  FILSHC V+
Subject   7043  NMRLPREDRIICLLQSYQYNITIRLALRFMRR*HIWPLFSSRNFHLRNNPLHFCFFILSHCQVN  7234

Range 5: 6689 to 6727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 10/13(77%) 0/13(0%) Plus/Minus
Query      508  LKHALVQHIHLID  546
                LKH+L+QHIH ID
Subject   6689  LKHSLMQHIHFID  6727

Range 6: 6850 to 7233 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 65/128(51%) 0/128(0%) Minus/Plus
Query        2  ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY  385
                AD V+  FIQVP *C+L  ++DD*+AR  +V EW V * G++T  LF +GA  +S G FT+*SGC+ +NDSE*K  NAE C EDG  G + +A C ++ *SARQD+  C   ++EEG  S L A  +Y
Subject   6850  AD*VH*HFIQVPC*CMLRIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFTV*SGCLPDNDSE*KSRNAEGCCEDGNCGWKKEARCVNDA*SARQDVW*CCIGKIEEGR*SDLLAEASY  7233

Range 7: 6690 to 6728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 9/13(69%) 0/13(0%) Minus/Plus
Query      507  SMRCICCTRACFN  545
                SM+CICC R CF+
Subject   6690  SMKCICCIRECFS  6728

Range 8: 6768 to 7232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 82/155(53%) 0/155(0%) Minus/Plus
Query        3  TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI  467
                T IR R+     KRRLS L    N + S  S   FHTGA LM+V    R*LI E   C RM C L G  DL AL +RC  +L R LY MKRM T*Q*LRMK++KCR L RRW  R    G+MC*+ MKRKAR   M   * *RR  I S RG+ I
Subject   6768  TEIRIRYHLSTGKRRLSRLMKP*NSRKS*LSTLTFHTGALLMYVTYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLYCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLEKRGQMC*RRMKRKARRMVMLYW*D*RRQMIRSSRGSLI  7232

Range 9: 6768 to 7082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 55/105(52%) 0/105(0%) Plus/Minus
Query      153  AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR  467
                AF  FHSESL   HPLH VK P E + AP +KS +V  P * T HS T   LA QSS    N HQ GTCMK + T+SA  +I ++ * *QTSF   *  S SY R
Subject   6768  AFLLFHSESLSGKHPLHTVKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIRNIHQQGTCMKCQCTQSALPRILRLH*A*QTSFPC**MVSDSYLR  7082

Range 10: 7125 to 7232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 16/36(44%) 0/36(0%) Plus/Minus
Query        3  YVVAAKR*DLQPSSTSLGRHLCRSCLALHVLSAHPA  110
                Y  +A+R D  PSS    +H   SCLALH    H A
Subject   7125  YEASARRSDHLPSSILPIQHHHTSCLALHASLTHLA  7232

Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds

Sequence ID: AF195822.1 Length: 12394 Number of Matches: 8

Range 1: 492 to 1037 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
404.3 bits(876) 0.0 161/182(88%) 0/182(0%) Minus/Plus
Query        1  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI  546
                IDEVYMLHKGMFQLTVVSMGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+EQI+YTD+SYRCPADVCYVLSSMTD+RGK++YPNGV+PNGD RPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQ+AVAKM++ AGK+RPDV+TTHEAQGKTY +VVLVRLKKA+DPIFSR+PHI
Subject    492  IDEVYMLHKGMFQLTVVSMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEEQIDYTDISYRCPADVCYVLSSMTDARGKKMYPNGVFPNGDVRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQKAVAKMEVVAGKKRPDVITTHEAQGKTYENVVLVRLKKADDPIFSRKPHI  1037

Range 2: 491 to 1036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.0 bits(620) 0.0 142/182(78%) 0/182(0%) Plus/Minus
Query        2  ICGCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM  547
                +CG REKIGSSAFF+LT+TT   VLPCAS VV TSGL FPA  SIFATA CISAFSF*VIV+YTSAS SKASSGVAIGTFS ERRG  SP G TPFGY  FPR SVI+D+T*QTSAGH  E SV SICSSANST S GVTNVFSL MNGIWFLSPY  TSFTPI+TTV+*N+PLC+I TSS+
Subject    491  MCGFREKIGSSAFFSLTKTTFSYVLPCAS*VVITSGLFFPATTSIFATAFCISAFSF*VIVRYTSAS*SKASSGVAIGTFSNERRGLTSPFGNTPFGYIFFPRASVIEDKT*QTSAGHR*EMSV*SICSSANSTASFGVTNVFSLLMNGIWFLSPYAITSFTPIETTVS*NIPLCSI*TSSI  1036

Range 3: 492 to 803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 50/104(48%) 0/104(0%) Plus/Minus
Query      235  HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAVXXXXXXXXXXXXQLKHALVQHIHLID  546
                HL +RA RS + IR HS+ +    + ISHR Q+ITNI    V N+ I+ LL+ + H F+ S + L S+ ERNLVL+ V  +L H+HR H +LKH+L+ HI+LID
Subject    492  HLLERA*RSHVSIREHSVWVHFLSTCISHRRQNITNICWTSVRNVSIIYLLLSELHSFIWSHECLLSVDERNLVLVPVRYHLFHSHRDHSKLKHSLM*HINLID  803

Range 4: 846 to 1037 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 27/64(42%) 0/64(0%) Plus/Minus
Query        1  DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH  192
                ++W   ++ I  LLQ H D + V L LR M   HIR  LP    H  +S LHF L +LSH  +H
Subject    846  NVWFSGENWIIRLLQSHQDHVFVCLTLRLMSSNHIRSFLPSHNFHFCHSLLHFSLLVLSHRQIH  1037

Range 5: 584 to 1036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 63/151(42%) 0/151(0%) Minus/Plus
Query        2  PDSVHK*RKDVCHS*RICGICR*ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY  454
                P+SVH+ R+D+  S   CG+   ADR+Y  F+ +   CLLC V DD*   ++ V + SVP W   TS L  +GA+ ++   FT+*SG V ++DSE +G NAE C ++G  G E K GC   +* AR D+++    E EEG  S     TT+
Subject    584  PNSVHQQREDIRDSK*SCGVR*GADRLY*HFLPMSSRCLLCFVFDD*CTWKENVPKRSVPEWRRETSTLVREGADRNAGRRFTL*SGRVSDDDSEREG*NAEGCGKNGSCGWEEKTGCDYYS*GAR*DIRKRGLGETEEGG*SNFLPKTTH  1036

Range 6: 493 to 531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 8/13(62%) 0/13(0%) Minus/Plus
Query      507  SMRCICCTRACFN  545
                SMR IC  R CF+
Subject    493  SMRFICYIRECFS  531

Range 7: 571 to 1032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 65/154(42%) 0/154(0%) Minus/Plus
Query        6  TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNH  467
                T  RT+FRS  E+R   L   LW+   SR  I  F T  + MFVM C R*L+   + C + EC+ M   DL A  +RC+ +  + LY MKR C *+*LR +R KCR L ++W    G + RM    M+RK R T+  S * *RR  I     NH
Subject    571  TGTRTKFRSSTERRHS*LQMKLWSSLRSR*IILTFLTDVQQMFVMFCLR*LMHVERKCTQTECSRMET*DLYARSRRCRSQRRKTLYSMKRTCI*R*LRTRRLKCRRLWQKWKLWLGRKDRM*LLLMRRKVRHTKTWSW*D*RRRMIQFSPENH  1032

Range 8: 571 to 1032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 64/154(42%) 0/154(0%) Plus/Minus
Query        6  VVAAKR*DLQPSSTSLGRHLCRSCLALHVLSAHPAFAXXXXXXXXXXXXAFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR  467
                VV  ++ D  PSS S       S LA H   +HP F+S P  P   Q SAF P  SES   T PLH VK     + AP + S EV   H GTL   T     +QSS T HNKH      K +Y  SA  + PQ+  E + S L  *TE GS  R
Subject    571  VVFGRKLDHPPSSVSPRPRFRMSYLAPHE**SHPVFSSQPQLPFLPQPSAFQPSRSESSSDTRPLHRVKRLPALRSAPSRTSVEVSRLHSGTLRLGTFSFHVHQSSKTKHNKHLLDIGKKCQYNLSAPQRTPQLHLESRMSSLC**TEFGSCPR  1032

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 9

Range 1: 6765 to 7310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
402.5 bits(872) 0.0 164/182(90%) 0/182(0%) Minus/Plus
Query        1  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI  546
                IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEF +E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI
Subject   6765  IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI  7310

Range 2: 6764 to 7303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
311.7 bits(674) 0.0 152/180(84%) 0/180(0%) Plus/Minus
Query        8  GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM  547
                G REKIGSSAFFNLT+TTS  VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SS NST SLGVTNVFSL MNGI FLSPY  TSFTPI TTVN*N+PLC++YTSS+
Subject   6764  GFREKIGSSAFFNLTKTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSGNSTASLGVTNVFSLLMNGI*FLSPYAITSFTPIATTVN*NIPLCSMYTSSI  7303

Range 3: 6843 to 7310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 84/156(54%) 0/156(0%) Plus/Minus
Query        1  DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VHXXXXXXXXXXXXNWHLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV  468
                DM LPR+D I  LLQ + ++I++ LALRFM   HI P  P R  HLR + LHF  FILSHC V+IRFI  S+L S + HL +RA RS +P+R H+IR+Q   S I HR   IT ISRAPV*N+ +L+ L+ +F+ F+R DKRLF + ER+L+LI+V
Subject   6843  DMRLPREDWIIRLLQSYQNNITIRLALRFMRR*HIWPLFPSRNFHLRNNPLHFCFFILSHCQVNIRFIQQSVLWSCDRHLLERA*RSSVPVRKHTIRVQFSSSHIGHRR*YITYISRAPV*NVCVLNQLLREFYSFIRRDKRLFPVDERDLILISV  7310

Range 4: 6765 to 6803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 9/13(69%) 0/13(0%) Plus/Minus
Query      508  LKHALVQHIHLID  546
                LKH+LVQH+H I+
Subject   6765  LKHSLVQHVHFIN  6803

Range 5: 6860 to 7309 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 77/150(51%) 0/150(0%) Minus/Plus
Query        2  DSVHK*RKDVCHS*RICGICR*ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY  451
                D VH+  KDVCH+*  C I   AD V+R FIQVP *C+LC ++DD +AR  +V EW V * G++T  LF +GA  +S G F +*SGC+ +NDSE*K  NAE C EDG  G E +A C ++ *SARQD+  C   ++EEG  S L A  +Y
Subject   6860  DPVHQQGKDVCHA**SCRIPGGAD*VHRHFIQVPC*CMLCIIVDDRYARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFAV*SGCLPDNDSE*KSRNAEGCCEDGNCGWEKEARCVNDA*SARQDVW*CCFGKIEEGG*SNLLAEASY  7309

Range 6: 6769 to 6804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 8/12(67%) 0/12(0%) Minus/Plus
Query      507  MRCICCTRACFN  542
                M+C CCTR CF+
Subject   6769  MKCTCCTRECFS  6804

Range 7: 6844 to 7308 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 85/155(55%) 0/155(0%) Minus/Plus
Query        3  TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI  467
                T IR R RS   KRRLS L  L N + S  S   FHTGA LM+VM   R* I E   C RM C L G  DL AL +RC  +L R L  MKRM T*Q*LRMK++KCR L RRW  R G  G+MC*+ MKRKAR   M   * *RR  I S RG+ I
Subject   6844  TEIRIRSRSSTGKRRLSRLMKL*NSRRS*LSTQTFHTGALLMYVMYYRR*PICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLCCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLGKRGQMC*RRMKRKARRMVMLFW*D*RRRMIQSSRGSLI  7308

Range 8: 6844 to 7158 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 56/105(53%) 0/105(0%) Plus/Minus
Query      153  AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR  467
                AF  FHSESL   HPLH  K P E + AP +KS +V  P * T HS T   LA +SS   HN HQ GTCMK   T+SA   I Q+ * *QTSF   *T S SY R
Subject   6844  AFLLFHSESLSGKHPLHTAKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYRSSTIIHNIHQQGTCMKCLCTQSAPPGILQLH*A*QTSFPC**TGSDSYLR  7158

Range 9: 7201 to 7308 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 16/36(44%) 0/36(0%) Plus/Minus
Query        3  YVVAAKR*DLQPSSTSLGRHLCRSCLALHVLSAHPA  110
                Y  +A+R D  PSS    +H   SCLALH    H A
Subject   7201  YEASARRLDHPPSSILPKQHHHTSCLALHASLTHLA  7308

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 9

Range 1: 6830 to 7375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
402.5 bits(872) 0.0 164/182(90%) 0/182(0%) Minus/Plus
Query        1  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI  546
                IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEF +E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI
Subject   6830  IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI  7375

Range 2: 6829 to 7368 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
311.7 bits(674) 0.0 152/180(84%) 0/180(0%) Plus/Minus
Query        8  GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM  547
                G REKIGSSAFFNLT+TTS  VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SS NST SLGVTNVFSL MNGI FLSPY  TSFTPI TTVN*N+PLC++YTSS+
Subject   6829  GFREKIGSSAFFNLTKTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSGNSTASLGVTNVFSLLMNGI*FLSPYAITSFTPIATTVN*NIPLCSMYTSSI  7368

Range 3: 6908 to 7375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 85/156(54%) 0/156(0%) Plus/Minus
Query        1  DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VHXXXXXXXXXXXXNWHLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV  468
                +M LPR+DRI  LLQ + ++I++ LALRFM C HI P  P R  HLR + LHF  FILSHC V+IRFI  S+L S + HL +RA RS +P+R H+IR+Q   S ISHR   IT +SRAPV*N+ +L+ L+ +F+ F+R DKRLF + ER+L+LI+V
Subject   6908  NMRLPREDRIIGLLQSYQNNITIRLALRFMRC*HIWPLFPSRNFHLRNNPLHFCFFILSHCQVNIRFIQQSVLWSCDRHLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YITYVSRAPV*NVCVLNQLLREFYSFIRRDKRLFPVDERDLILISV  7375

Range 4: 6830 to 6868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 9/13(69%) 0/13(0%) Plus/Minus
Query      508  LKHALVQHIHLID  546
                LKH+LVQH+H I+
Subject   6830  LKHSLVQHVHFIN  6868

Range 5: 6925 to 7374 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 78/150(52%) 0/150(0%) Minus/Plus
Query        2  DSVHK*RKDVCHS*RICGICR*ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY  451
                D VH+  KDVCH+*  C I   AD V+R FIQVP * +LC ++DD*+AR  +V EW V * G++T  LF +GA  +S G F +*SGC+ +NDSE*K  NAE C EDG  G E +A C +N *SARQD+  C   ++EEG  S L A  +Y
Subject   6925  DPVHQQGKDVCHA**SCRIPGGAD*VHRHFIQVPC*RMLCIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFAV*SGCLPDNDSE*KSRNAEGCCEDGNCGWEKEARCVNNA*SARQDVW*CCFGKIEEGR*SDLLAEASY  7374

Range 6: 6834 to 6869 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 8/12(67%) 0/12(0%) Minus/Plus
Query      507  MRCICCTRACFN  542
                M+C CCTR CF+
Subject   6834  MKCTCCTRECFS  6869

Range 7: 6909 to 7373 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 86/155(55%) 0/155(0%) Minus/Plus
Query        3  TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI  467
                T IR R RS   KRRLS L  L N + S  S   FHTGA L +VM   R*LI E   C RM C L G  DL AL +RC  +L R L  MKRM T*Q*LRMK++KCR L RRW  R G  G+MC*Q MKRKAR   M   * *RR  I S RG+ I
Subject   6909  TEIRIRSRSSTGKRRLSRLMKL*NSRRS*LSTQTFHTGALLTYVMYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLCCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLGKRGQMC*QRMKRKARRMVMLFW*D*RRPMIRSSRGSLI  7373

Range 8: 6909 to 7223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 56/105(53%) 0/105(0%) Plus/Minus
Query      153  AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR  467
                AF  FHSESL   HPLH  K P E + AP +KS +V  P * T HS T   LA QSS   HN  Q GTCMK   T+SA   I Q+ * *QTSF   *T S SY R
Subject   6909  AFLLFHSESLSGKHPLHTAKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIHNIRQQGTCMKCLCTQSAPPGILQLH*A*QTSFPC**TGSDSYLR  7223

Range 9: 7266 to 7373 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 17/36(47%) 0/36(0%) Plus/Minus
Query        3  YVVAAKR*DLQPSSTSLGRHLCRSCLALHVLSAHPA  110
                Y  +A+R D +PSS    +H   SCLALH L  H A
Subject   7266  YEASARRSDHRPSSILPKQHHHTSCLALHALLTHLA  7373

Nucleotide Sequence (383 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 18 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
383

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 12

Range 1: 9697 to 9969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 74/91(81%) 0/91(0%) Plus/Minus
Query        3  IW*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NIL*NTLHR  275
                IW HHFTIKL+Y*RGIE+TGIY L*H+M FVIASLN KA*T KP*R* VS LH YRN CSY L AVI DSSTRGH+RPG*S*NIL*NTL R
Subject   9697  IWRHHFTIKLDY*RGIEVTGIYGL*HVMPFVIASLNNKA*TRKP*R*RVSALHLYRN*CSYFLRAVI*DSSTRGHQRPG*S*NIL*NTLTR  9969

Range 2: 9664 to 9969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 66/102(65%) 0/102(0%) Minus/Plus
Query        3  VIVYILGPPRSSMKGVLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSPN  308
                +IVY      ++  GVLE I GSP S M T *RVLD+  *+VAA++TI+MQ+RN LALRF+CLCFI+*RCYH+ H+ML+AINAGHFYS  I KFY EVVSPN
Subject   9664  IIVYCAHYSVNTC*GVLEYILGSPRSLMATR*RVLDNRA*EVAALITIQMQSRNALALRFSCLCFII*RCYHEWHNMLEAINAGHFYSALIIKFYSEVVSPN  9969

Range 3: 9698 to 9970 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 68/91(75%) 0/91(0%) Plus/Minus
Query        2  NLVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLKHPSS  274
                NL TPLH+KT*+LT NR+DRHL PLT +AI DSIFK *SIDK TLTLTRFGSAFVS*L+QL PTR +  LFN W SKT VILKY+LKHP++
Subject   9698  NLATPLHYKT*LLTRNRSDRHLWPLTCYAIRDSIFK**SIDKKTLTLTRFGSAFVS*LMQLLPTRGYLGLFNAWPSKTGVILKYTLKHPNT  9970

Range 4: 9695 to 9970 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 67/92(73%) 0/92(0%) Minus/Plus
Query        2  LR*RVF*RIFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVKWCHQI  277
                +R RVF* IF DHPGL  PRVEES +TA R *L *LRY+CR ET *R*G LVYAL FKDAITN + C*R *MPV SIPR  SSF+VKWC QI
Subject   9695  IRVRVF*SIF*DHPGL*WPRVEES*ITARRK*LH*LRYKCRAETR*R*GFLVYALLFKDAITNGITC*RP*MPVTSIPR**SSFIVKWCRQI  9970

Range 5: 9705 to 9971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 62/89(70%) 0/89(0%) Plus/Minus
Query        1  KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKTP  267
                KFGDTTS *NL I+ E*K*PAF+A N+ C+ **HL* IKHRQ NLNAN+FR CI IV  AATSY   S+TLQ V I+D+GDP+I+SKTP
Subject   9705  KFGDTTSL*NLIINAE*K*PAFMASNMLCHS**HL*IIKHRQENLNANAFRLCICIVINAATSYARLSRTLQRVAIKDRGDPKIYSKTP  9971

Range 6: 9705 to 9971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 67/89(75%) 0/89(0%) Minus/Plus
Query        1  GCFREYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVKVXXXXXXXXXXXSQIA*YVKGYKCRSFLFHVNIQVLW*SGVTKF  267
                GCFR YFRIT VFD H LKS  * RVG SC +YDTNAEPKRVSVKV+LSMLY LKMLS++A*+V+G+KCRS LF VN QVL *SGV KF
Subject   9705  GCFRVYFRITPVFDGHALKSPR*PRVGSSCINYDTNAEPKRVSVKVFLSMLYYLKMLSRMA*HVRGHKCRSLLFRVNNQVL**SGVAKF  9971

Range 7: 9636 to 9746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 27/37(73%) 0/37(0%) Plus/Minus
Query      271  IEDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA  381
                I+DRG PKIY+ TP*H+FTL* A YT+I LP PPKEA
Subject   9636  IKDRGDPKIYSKTP*HVFTL*CAQYTIIFLPDPPKEA  9746

Range 8: 9635 to 9745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 28/37(76%) 0/37(0%) Plus/Minus
Query      272  SKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP  382
                SKTGV+LKYTL  PNTYLHY    TL*YSYQ L KKP
Subject   9635  SKTGVILKYTLKHPNTYLHYNAHNTL*YSYQTLLKKP  9745

Range 9: 9634 to 9747 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 29/38(76%) 0/38(0%) Minus/Plus
Query      270  LASLGGPGKSIIVYRAVYSVNMC*GVIVYILGPPRSSM  383
                LASLGG GK+IIVY A YSVN C*GV+ YILG PRS M
Subject   9634  LASLGGSGKNIIVYCAHYSVNTC*GVLEYILGSPRSLM  9747

Range 10: 9636 to 9746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 27/37(73%) 0/37(0%) Minus/Plus
Query      271  GFFGRAW*EYHSV*GRL*CKYVLGRYSVYFRTTPVFD  381
                GFF R W*EY+SV   L*CKYVLG + VYFR TPVFD
Subject   9636  GFFRRVW*EYYSVLCAL*CKYVLGCFRVYFRITPVFD  9746

Range 11: 9634 to 9747 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 26/38(68%) 0/38(0%) Plus/Minus
Query      270  HRRPGWS*NIHYNALTHIYTINGPIHYDTLTRPSQRSQ  383
                H+RPG S*NI  N LT IYTI   IHY+ LTRPS RSQ
Subject   9634  HQRPG*S*NIL*NTLTRIYTIMRTIHYNILTRPS*RSQ  9747

Range 12: 9635 to 9742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 26/36(72%) 0/36(0%) Minus/Plus
Query      275  WLLWEGLVRVS*CIGPFIV*ICVRAL*CIF*DHPGL  382
                WLL EGLVR+ *CI   IV*I VR  * IF*DHPGL
Subject   9635  WLL*EGLVRIL*CIVRIIV*IRVRVF*SIF*DHPGL  9742

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 12

Range 1: 9410 to 9715 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.2 bits(328) 0.0 73/102(72%) 0/102(0%) Plus/Minus
Query        2  NLVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLKHPSSKTGVVLKYTL*  307
                NL TPLH KT*+LT NRNDRHL PLT HAI DS FKL SIDK TLTLTRFGSAFV *L QL  TR +  LFN WSSKT VILKY+LKHP++     L YTL*
Subject   9410  NLATPLHRKT*LLTRNRNDRHLWPLTCHAIRDSTFKLQSIDKKTLTLTRFGSAFVL*LTQLLSTRSYLGLFNAWSSKTGVILKYTLKHPNTYLHYNLHYTL*  9715

Range 2: 9409 to 9714 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 67/102(66%) 0/102(0%) Minus/Plus
Query        3  VIVYILGPPRSSMKGVLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSPN  308
                +IVY      ++  GVLE I GSP S  TT *RVLD+  * VAA++TI+MQ+RN LALRF+CLCF++*RCYH+ HDML+AINAGHFYS  I KFYGEVVSPN
Subject   9409  IIVYSADYSVNTC*GVLEYILGSPRSLKTTR*RVLDNCA*KVAALITIQMQSRNALALRFSCLCFVI*RCYHEWHDMLEAINAGHFYSALIIKFYGEVVSPN  9714

Range 3: 9442 to 9714 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.5 bits(320) 0.0 71/91(78%) 0/91(0%) Plus/Minus
Query        3  IW*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NIL*NTLHR  275
                IW HHFT+KL+Y*RGIEMTGIY L*H+M FVIA LNYKA*T KP*R* VS LH Y N  SY L AVI DSSTRG +RPG*S*NIL*NTL R
Subject   9442  IWRHHFTVKLDY*RGIEMTGIYGL*HVMPFVIAPLNYKA*TRKP*R*RVSALHLYCN*RSYFLRAVI*DSSTRGLQRPG*S*NIL*NTLTR  9714

Range 4: 9450 to 9716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 62/89(70%) 0/89(0%) Plus/Minus
Query        1  KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKTP  267
                KFGDTTSP*NL I+ E*K*PAF+A N+SC+ **HL*  KHRQ NLNAN+FR CI IV  AAT Y   S+TLQ VV +D+GDP+I+SKTP
Subject   9450  KFGDTTSP*NLIINAE*K*PAFMASNMSCHS**HL*ITKHRQENLNANAFRLCICIVINAATFYAQLSRTLQRVVFKDRGDPKIYSKTP  9716

Range 5: 9440 to 9715 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 68/92(74%) 0/92(0%) Minus/Plus
Query        2  LR*RVF*RIFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVKWCHQI  277
                +R RVF* IF DHPGL  PRVEES +TA R *L+*L+Y+CR ET *R*G LVYAL*FK AITN M C*R *MPVISIPR  SSF VKWC QI
Subject   9440  IRVRVF*SIF*DHPGL*RPRVEES*ITARRK*LR*LQYKCRAETR*R*GFLVYAL*FKGAITNGMTC*RP*MPVISIPR**SSFTVKWCRQI  9715

Range 6: 9411 to 9716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 68/102(67%) 0/102(0%) Minus/Plus
Query        1  YSVYFRTTPVFDEGCFREYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVKVXXXXXXXXXXXSQIA*YVKGYKCRSFLFHVNIQVLW*SGVTKF  306
                YSV  R    +  GCFR YFRIT VF+DH LKS  * RV  SC +Y+TNAEPKRVSVKV+LSML +LK+LS++A*+V+G+KCRSFLF VN QVL *SGV KF
Subject   9411  YSV*CRL*CKYVLGCFRVYFRITPVFEDHALKSPR*LRVESSCVNYNTNAEPKRVSVKVFLSMLCNLKVLSRMA*HVRGHKCRSFLFRVNNQVLR*SGVAKF  9716

Range 7: 9380 to 9493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 28/38(74%) 0/38(0%) Plus/Minus
Query      269  SSKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP  382
                SSKTGV+LKYTL  PNTYLHY   YTL*YSY+ L  KP
Subject   9380  SSKTGVILKYTLKHPNTYLHYNLHYTL*YSYRTLL*KP  9493

Range 8: 9381 to 9488 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 26/36(72%) 0/36(0%) Plus/Minus
Query      274  EDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA  381
                +DRG PKIY+ TP*H+FTL*+ALYT+I LP PP EA
Subject   9381  KDRGDPKIYSKTP*HVFTL*SALYTIIFLPDPPIEA  9488

Range 9: 9379 to 9486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 27/36(75%) 0/36(0%) Minus/Plus
Query      276  LASLGGPGKSIIVYRAVYSVNMC*GVIVYILGPPRS  383
                LAS+GG GK+IIVY A YSVN C*GV+ YILG PRS
Subject   9379  LASIGGSGKNIIVYSADYSVNTC*GVLEYILGSPRS  9486

Range 10: 9381 to 9494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 26/38(68%) 0/38(0%) Minus/Plus
Query      268  GFFGRAW*EYHSV*GRL*CKYVLGRYSVYFRTTPVFDE  381
                GF+ R  *EY+SV* RL*CKYVLG + VYFR TPVF++
Subject   9381  GFYRRVR*EYYSV*CRL*CKYVLGCFRVYFRITPVFED  9494

Range 11: 9380 to 9487 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 25/36(69%) 0/36(0%) Minus/Plus
Query      275  WLLWEGLVRVS*CIGPFIV*ICVRAL*CIF*DHPGL  382
                WLL EG VR+ *CI   IV*I VR  * IF*DHPGL
Subject   9380  WLL*EGPVRIL*CIVQIIV*IRVRVF*SIF*DHPGL  9487

Range 12: 9379 to 9489 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 24/37(65%) 0/37(0%) Plus/Minus
Query      273  RRPGWS*NIHYNALTHIYTINGPIHYDTLTRPSQRSQ  383
                +RPG S*NI  N LT IYTI   IHY+ LT PS RSQ
Subject   9379  QRPG*S*NIL*NTLTRIYTIICTIHYNILTGPSYRSQ  9489

Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds

Sequence ID: EF103901.1 Length: 5715 Number of Matches: 12

Range 1: 3125 to 3385 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.9 bits(310) 0.0 62/87(71%) 0/87(0%) Minus/Plus
Query        6  GVLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSP  266
                GVLENI  SP SSMTT *RVLD+  *+VAAIVT++MQ+R+ LALRF+CLCFIV*RC+H+ +D +KA+NAGH YS  +FKFYGEVVSP
Subject   3125  GVLENILRSPRSSMTTR*RVLDNSA*EVAAIVTLQMQSRSALALRFSCLCFIV*RCHHEWYDEVKAMNAGHLYSALMFKFYGEVVSP  3385

Range 2: 3122 to 3385 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 65/88(74%) 0/88(0%) Plus/Minus
Query        6  W*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NIL*NTL  269
                W HHFTIKLE+*RGIEMTGI+ L  ++ FV+ASL+YKA*T KP R   S LH   NYCSY+L AVI DSSTRGHRRPG*S*NIL*NTL
Subject   3122  WRHHFTIKLEH*RGIEMTGIHCLHLVIPFVMASLDYKA*TRKPQRQRASALHL*CNYCSYLLRAVI*DSSTRGHRRPG*S*NIL*NTL  3385

Range 3: 3124 to 3390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 65/89(73%) 0/89(0%) Plus/Minus
Query        1  KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKTP  267
                K GDTTSP*NLNI+ E*+*PAFIAF  S + * HL*TIKHRQ NLNAN+ R CI  VTIAATSY   S+TLQ VVIED+GD +IFSKTP
Subject   3124  KIGDTTSP*NLNINAE*R*PAFIAFTSSYHS*WHL*TIKHRQENLNANALRLCICNVTIAATSYALLSRTLQRVVIEDRGDLKIFSKTP  3390

Range 4: 3123 to 3386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 67/88(76%) 0/88(0%) Minus/Plus
Query        5  RVF*RIFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVKWCHQ  268
                +VF*RIF DHPGLR*PRVEES +TA R *LQ*L Y+CR E   R*G LVYAL* KDAITN M  *R *MPVISIPR  SSFMVKWC Q
Subject   3123  KVF*RIF*DHPGLR*PRVEES*ITARRR*LQ*LHYKCRAEARWR*GFLVYAL*SKDAITNGMTR*RQ*MPVISIPR*CSSFMVKWCRQ  3386

Range 5: 3084 to 3386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 67/101(66%) 0/101(0%) Plus/Minus
Query        5  LVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLKHPSSKTGVVLKYTL*  307
                L TPLHHKT* LT NR+DRH  P   H I D IF+L*SIDK T T TRFGSAFV *LLQL PTR +  LFN WSSKT VILKYSLKH +        YTL*
Subject   3084  LATPLHHKT*TLTRNRDDRHSLPSPRHTIRDGIFRL*SIDKKTSTPTRFGSAFVM*LLQLPPTRCYLGLFNAWSSKTGVILKYSLKHLNMYLHYKRHYTL*  3386

Range 6: 3127 to 3390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 63/88(72%) 0/88(0%) Minus/Plus
Query        1  CFREYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVKVXXXXXXXXXXXSQIA*YVKGYKCRSFLFHVNIQVLW*SGVTKF  264
                CFREYF+IT VFDDH LKS  *+RVG SCNSY TNAEPKRV V+V+LSMLYSLKM S++ *  +G +CRS LF VN+QVLW*SGV  F
Subject   3127  CFREYFKITPVFDDHALKSPR*QRVGGSCNSYITNAEPKRVGVEVFLSMLYSLKMPSRMV*RGEGNECRSSLFRVNVQVLW*SGVANF  3390

Range 7: 3054 to 3167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 29/38(76%) 0/38(0%) Plus/Minus
Query      269  SSKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP  382
                SSKTGV+LKY+L   N YLHYKR YTL* SYQ LPKKP
Subject   3054  SSKTGVILKYSLKHLNMYLHYKRHYTL*NSYQTLPKKP  3167

Range 8: 3054 to 3167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 30/38(79%) 0/38(0%) Minus/Plus
Query      269  WLLWEGLVRVS*CIGPFIV*ICVRAL*CIF*DHPGLR*  382
                WLLWEGLVR+ *CI PFIV*I V+  * IF*DHPGLR*
Subject   3054  WLLWEGLVRIL*CIVPFIV*IHVKVF*RIF*DHPGLR*  3167

Range 9: 3053 to 3166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 30/38(79%) 0/38(0%) Plus/Minus
Query      270  HRRPGWS*NIHYNALTHIYTINGPIHYDTLTRPSQRSQ  383
                HRRPG S*NI  N LT IYTING IHY  LTRPSQRSQ
Subject   3053  HRRPG*S*NIL*NTLTCIYTINGTIHYKILTRPSQRSQ  3166

Range 10: 3055 to 3165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 27/37(73%) 0/37(0%) Plus/Minus
Query      271  IEDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA  381
                IEDRG  KI++ TP*H+FTL*TALYT+  LP PPKEA
Subject   3055  IEDRGDLKIFSKTP*HVFTL*TALYTIKFLPDPPKEA  3165

Range 11: 3055 to 3168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 25/38(66%) 0/38(0%) Minus/Plus
Query      268  GFFGRAW*EYHSV*GRL*CKYVLGRYSVYFRTTPVFDE  381
                GFFGR W*E++SV* RL*CKY+L  +  YF+ TPVFD+
Subject   3055  GFFGRVW*EFYSV*CRL*CKYMLRCFREYFKITPVFDD  3168

Range 12: 3053 to 3166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 28/38(74%) 0/38(0%) Minus/Plus
Query      270  LASLGGPGKSIIVYRAVYSVNMC*GVIVYILGPPRSSM  383
                LASLGG GK+ IVY AVYSVN C*GV+  IL  PRSSM
Subject   3053  LASLGGSGKNFIVYSAVYSVNTC*GVLENILRSPRSSM  3166

Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds

Sequence ID: AF195822.1 Length: 12394 Number of Matches: 13

Range 1: 3214 to 3462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 46/83(55%) 0/83(0%) Plus/Minus
Query        6  W*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NI  254
                W  HFT   EY* G + T I +L  ++ FV ASL YKA T  P* * +S L   R+Y SY+L AVI D STRGHRRP *+*NI
Subject   3214  WQLHFTTIYEY*HGKDSTDIDTLKRVIPFVKASLYYKAKTRNP*Y*RISALRLQRSYRSYLLRAVIDDPSTRGHRRPE*T*NI  3462

Range 2: 3100 to 3216 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 23/39(59%) 0/39(0%) Plus/Minus
Query      267  LHRRPGWS*NIHYNALTHIYTINGPIHYDTLTRPSQRSQ  383
                +H  PG   NIH N L  IY IN  +HY  LTRPSQRSQ
Subject   3100  IHYDPG*HWNIH*NTLIRIYKINDTVHYIVLTRPSQRSQ  3216

Range 3: 3205 to 3465 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 43/87(49%) 0/87(0%) Minus/Plus
Query        3  VLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSPN  263
                V+ NI G  WSSM   *RV+DD  *+VAAI T+  Q    L LR +CL FIV*RC+H+ ++  K+IN G  +S  IF + GEV  P+
Subject   3205  VVVNILGLLWSSMAAR*RVVDDRA*EVAAIATL*TQC*YALVLRVSCLRFIV*RCFHERYNAFKSINVGTIFSVLIFIYCGEVKLPS  3465

Range 4: 3101 to 3205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 21/35(60%) 0/35(0%) Minus/Plus
Query      278  WLLWEGLVRVS*CIGPFIV*ICVRAL*CIF*DHPG  382
                WL WEGLVR  *C   FI+*I +R  *CIF  +PG
Subject   3101  WLRWEGLVRTI*CTVSFIL*IRIRVF*CIFQCYPG  3205

Range 5: 3204 to 3467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 43/88(49%) 0/88(0%) Plus/Minus
Query        1  KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKT  264
                K G+ TSP  +NI+ E   P  I  N     * HL TIK RQ  LN N+++ C+  V IAATSY  SS TLQ   IEDQ  P IF+ T
Subject   3204  KLGNFTSPQYMNINTEKIVPTLILLNALYRS*KHLYTIKRRQETLNTNAYQHCVYNVAIAATSYARSSTTLQRAAIEDQSKPRIFTTT  3467

Range 6: 3102 to 3215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 19/38(50%) 0/38(0%) Plus/Minus
Query      268  FIEDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA  381
                F   RG   IYT TP*++FT *  L  ++ LP PP EA
Subject   3102  FTTTRGNTGIYTKTP*YVFTK*MILCIILFLPDPPNEA  3215

Range 7: 3206 to 3466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 47/87(54%) 0/87(0%) Plus/Minus
Query        2  NLVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLK  262
                NL T LHH  *ILT  R  RH    T + + +SIF L*S DK  L LT   +AF +*L QL PTR H R FN   SKTRV L+YSL+
Subject   3206  NLATSLHHNI*ILTRKR*YRH*YS*TRYTVRESIFIL*SEDKKPLILTHISTAFTT*LSQLPPTRGHRRPFNARPSKTRVNLEYSLR  3466

Range 8: 3101 to 3214 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 20/38(53%) 0/38(0%) Plus/Minus
Query      269  SSKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP  382
                S + GV L+YTL  P+TYL  K    L  SYQ LP KP
Subject   3101  SLRPGVTLEYTLKHPDTYLQNK*YCALYCSYQTLPTKP  3214

Range 9: 3215 to 3451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 41/79(52%) 0/79(0%) Minus/Plus
Query       17  IFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVK  253
                IF  + GLR PRVE S MTA R *L+*LR +   +  * *G LV+AL*+KDA TN +   R+ M V+S P  YS  +VK
Subject   3215  IF*VYSGLRWPRVEGSSMTARRR*LR*LRCKRSADMR*Y*GFLVFAL*YKDAFTNGITRLRVSMSVLSFPC*YSYIVVK  3451

Range 10: 3102 to 3203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 18/34(53%) 0/34(0%) Minus/Plus
Query      280  GFFGRAW*EYHSV*GRL*CKYVLGRYSVYFRTTP  381
                GF GR W*E ++    L CKYV G +SVY   TP
Subject   3102  GFVGRVW*EQYNAQYHLFCKYVSGCFSVYSSVTP  3203

Range 11: 3213 to 3335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 23/41(56%) 0/41(0%) Minus/Plus
Query      133  EYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVK  255
                EY R TLVFD   LK   * RVG SC+SY  NA    VS+K
Subject   3213  EYSRFTLVFDGRALKGRR*PRVGGSCDSYVVNAVLICVSIK  3335

Range 12: 3399 to 3467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 15/23(65%) 0/23(0%) Minus/Plus
Query        1  YKCRSFLFHVNIQVLW*SGVTKF  69
                Y+CR +LF VNI +LW*S V KF
Subject   3399  YQCRYYLFRVNIHILW*SEVAKF  3467

Range 13: 3100 to 3204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 19/35(54%) 0/35(0%) Minus/Plus
Query      279  LASLGGPGKSIIVYRAVYSVNMC*GVIVYILGPPR  383
                LASLGG GK+ I++  +Y VN   GV+VYI   PR
Subject   3100  LASLGGSGKNNIMHSIIYFVNTYQGVLVYIPVLPR  3204