Queries
Nucleotide Sequence (493 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
347.0 | 1816.0 | 26% | 9.652e-94 | 83% | KU362270.1 | |
333.3 | 1743.1 | 26% | 1.326e-89 | 79% | KP067352.1 | |
342.9 | 1816.4 | 26% | 1.683e-92 | 80% | KU362275.1 | |
337.4 | 1794.0 | 26% | 7.608e-91 | 80% | KU362276.1 | |
337.4 | 1794.0 | 26% | 7.608e-91 | 80% | KU362278.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 81 coat protein (CP) gene, partial cds
Sequence ID: KU362270.1 Length: 599 Number of Matches: 9
Range 1: 61 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.0 bits(751) | 0.0 | 139/154(90%) | 0/154(0%) | Plus/Minus |
Query 27 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQ 488 DNGPFNLLISQFPLAVTI*IHKILFFALCIW RAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSCC+RWCNQA SGWYYYRNLHVLWWFKDD+HLRI ++FCDIKSSFKLVTHF SG+L IP*TLTR RSRLAK ITSRSLHEHI I+ Subject 61 DNGPFNLLISQFPLAVTI*IHKILFFALCIW*RAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCCHRWCNQAGSGWYYYRNLHVLWWFKDDIHLRISKDFCDIKSSFKLVTHFTSGHLRIP*TLTRRRSRLAK*ITSRSLHEHILIR 522
Range 2: 57 to 524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
306.7 bits(663) | 0.0 | 137/156(88%) | 0/156(0%) | Minus/Plus |
Query 25 FAGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR 492 +AG CVREGTGRLF SPISTF GSA RG+*G QT NG*QA*KNF*YRRN + S*DE+HL*TTKGHGGFGSSTNRT LGYTSG NSYFNRIKKFM *SDG*YGSEKSHRLLLGNAA DVDI*HV RYREQRRVFCEFI**RRAEIDL*EG*RGHC+ Subject 57 YAG*VCVREGTGRLFTSPISTFYGSAFRGF*GGQT*NG*QA*KNF*YRRNLY*S*DEYHL*TTKGHGGFGSSTNRTRLGYTSGGNSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAAIDVDI*HVTRYREQRRVFCEFI**RRAEIDL*EG*RGHCQ 524
Range 3: 307 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(360) | 0.0 | 72/72(100%) | 0/72(0%) | Minus/Plus |
Query 27 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 242 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV Subject 307 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 522
Range 4: 64 to 258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.9 bits(316) | 0.0 | 61/65(94%) | 0/65(0%) | Minus/Plus |
Query 291 DANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 485 D VFVKGPGGYSLRQSRPSTGQR GD+EVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME Subject 64 DEYVFVKGPGGYSLRQSRPSTGQRSGDSEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 258
Range 5: 59 to 523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.9 bits(622) | 0.0 | 140/155(90%) | 0/155(0%) | Minus/Plus |
Query 26 CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 490 C M MCS*RDREVI FANLDL RVSV GILR PD KWVTSLKELLISQK ILR* SSLNHQRTWRFR**YQPD AWLHQR QQLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLAR QIQRAKKSIL*IYIVTASGN*LMRRLKGPLS Subject 59 CRMSMCS*RDREVIHFANLDLLRVSVQGILRWPDVKWVTSLKELLISQKSLLILR*ISSLNHQRTWRFR**YQPDPAWLHQRWQQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARHQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 523
Range 6: 306 to 521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 71/72(99%) | 0/72(0%) | Plus/Minus |
Query 28 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 243 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNI+CSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA Subject 306 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNINCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 521
Range 7: 63 to 257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 59/65(91%) | 0/65(0%) | Plus/Minus |
Query 292 SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFAS 486 SMSFGGSKM+FISG VKISAILKVLLSLSPISRLATS SP R*PVEGRDWRSE*PPGPFTNT++S Subject 63 SMSFGGSKMIFISGLVKISAILKVLLSLSPISRLATSESPER*PVEGRDWRSE*PPGPFTNTYSS 257
Range 8: 332 to 520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 60/63(95%) | 0/63(0%) | Plus/Minus |
Query 29 QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF 217 QWPL*PSHKSISARRYYINSQNTLLCSLYL TC*MSTS+AALPRRSL*DFSDPYYPSLQ INF Subject 332 QWPL*PSHKSISARRYYINSQNTLLCSLYLVTC*MSTSIAALPRRSL*DFSDPYYPSLQHINF 520
Range 9: 59 to 238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 50/60(83%) | 0/60(0%) | Plus/Minus |
Query 311 QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPA 490 QR* SSQD *+FLRY*KFF*ACHPF VW PQ PL+ADP KVEIGE NNLPVPSRTH+HPA Subject 59 QR*YSSQD**RFLRY*KFF*ACHPFHVWPPQNPLNADP*KVEIGEVNNLPVPSRTHTHPA 238
Grapevine leafroll associated virus 1 isolate LN KTST coat protein gene, partial cds
Sequence ID: KP067352.1 Length: 855 Number of Matches: 9
Range 1: 156 to 620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
333.3 bits(721) | 0.0 | 134/155(86%) | 0/155(0%) | Plus/Minus |
Query 27 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ 491 DNGPFNLLISQFPLAVT+*+HKILFFALCIWRRAK QHQLQHCQEEVCETFLIRITHHFS *IF*FC*N C +RWCNQA SGWYYYRNLHVLWWFKDD+HL I E+FCDIKSSFKLV H SG+L IP*TLTR*RSRLAK ITS SLHEHI I+Q Subject 156 DNGPFNLLISQFPLAVTV*VHKILFFALCIWRRAKSQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NGCRHRWCNQAGSGWYYYRNLHVLWWFKDDIHLGISEDFCDIKSSFKLVAHITSGHLGIP*TLTR*RSRLAK*ITSWSLHEHILIRQ 620
Range 2: 405 to 620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(359) | 0.0 | 71/72(99%) | 0/72(0%) | Minus/Plus |
Query 27 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 242 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGA+V Subject 405 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAVV 620
Range 3: 156 to 356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.8 bits(318) | 0.0 | 61/67(91%) | 0/67(0%) | Minus/Plus |
Query 291 LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 491 L D NVFVKGPGGYSLRQSRPSTGQR GD+EV RR+MGDKLKRTFNIAEIFTNPEMNIIFEPPKDME Subject 156 LPDENVFVKGPGGYSLRQSRPSTGQRSGDSEVTRRDMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 356
Range 4: 155 to 622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
284.7 bits(615) | 0.0 | 128/156(82%) | 0/156(0%) | Minus/Plus |
Query 25 FAGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR 492 FAG ECVREGT RLF SPISTFNGSA RG+ G QT G QA*KNF*YRRN H S DE+HL*TTKGHGGFG+STNRT LGYTSG +S+FNRIKKFM *SDG*YGSEKSHRLLLGN A DVD *HVARYREQRRVFCE I *RRAE DL*EG*RG C+ Subject 155 FAG*ECVREGTRRLFTSPISTFNGSAFRGFRGDQT*YGRQA*KNF*YRRNLH*SRDEYHL*TTKGHGGFGNSTNRTRLGYTSGGDSHFNRIKKFMC*SDG*YGSEKSHRLLLGNVAIDVDF*HVARYREQRRVFCELIQ*RRAETDL*EG*RGRCQ 622
Range 5: 154 to 621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
280.6 bits(606) | 0.0 | 136/156(87%) | 0/156(0%) | Minus/Plus |
Query 26 FCWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 493 FC MRMCS*RD+EVI FANLDLQRVSV GI R*PD W TSLKELLISQK S I R* SSLNHQRTWRFR**YQPD AWLHQR +Q FQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C* LARRQIQRAKKSIL* Y VTASGN*LMRRLKGPLS Subject 154 FCRMRMCS*RDQEVIHFANLDLQRVSVQGIPR*PDVIWATSLKELLISQKSSLIPR*ISSLNHQRTWRFR**YQPDPAWLHQRWRQPFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*LLARRQIQRAKKSIL*TYTVTASGN*LMRRLKGPLS 621
Range 6: 404 to 619 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 66/72(92%) | 0/72(0%) | Plus/Minus |
Query 28 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 243 T APLTFS*V+FRSPLLYKFTKYSSLLSVSGDVL VNI+C+IAKKKSVRLF*SVLPITSAHKFFNSVE+AVA Subject 404 TTAPLTFS*VSFRSPLLYKFTKYSSLLSVSGDVLKVNINCNIAKKKSVRLF*SVLPITSAHKFFNSVEMAVA 619
Range 7: 155 to 355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 60/67(90%) | 0/67(0%) | Plus/Minus |
Query 292 SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK 492 SMSFGGSKM+FISG VKISAILKVLLSLSPISRL TS SP R*PVEGRDWRSE*PPGPFTNTF+S K Subject 155 SMSFGGSKMIFISGLVKISAILKVLLSLSPISRLVTSESPER*PVEGRDWRSE*PPGPFTNTFSSGK 355
Range 8: 430 to 618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 55/63(87%) | 0/63(0%) | Plus/Minus |
Query 29 QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF 217 Q PL*PSHKS+SARRY I+SQNTLLCSLYLATC* STS+A LPRRSL*DFSDPYYPSLQ INF Subject 430 QRPL*PSHKSVSARRYCISSQNTLLCSLYLATC*KSTSIATLPRRSL*DFSDPYYPSLQHINF 618
Range 9: 154 to 336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 48/61(79%) | 0/61(0%) | Plus/Minus |
Query 311 QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK 493 QR* SS+D *+FLRY*KFF*AC P+ VW P+ PL+ADPLKVEIGE NNL VPSRTHSHPAK Subject 154 QR*YSSRD**RFLRY*KFF*ACRPYHVWSPRNPLNADPLKVEIGEVNNLLVPSRTHSHPAK 336
Grapevine leafroll associated virus 1 isolate 129 coat protein (CP) gene, partial cds
Sequence ID: KU362275.1 Length: 599 Number of Matches: 9
Range 1: 58 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.9 bits(742) | 0.0 | 139/155(90%) | 0/155(0%) | Plus/Minus |
Query 27 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ 491 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSC +RWC+QA SGWYYYRNLHVLWWFKDD+HL I ENFCDIKSSFKLVTHF SG+L IP*TLT RSRLAK ITSRSLHEHI I+Q Subject 58 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCRHRWCDQAGSGWYYYRNLHVLWWFKDDIHLGISENFCDIKSSFKLVTHFTSGHLRIP*TLTCRRSRLAK*ITSRSLHEHILIRQ 522
Range 2: 60 to 524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 137/155(88%) | 0/155(0%) | Minus/Plus |
Query 25 AGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR 489 AG ECVREGTGRLF SPISTF SA RG+*G QT +G*QA*KNF*YRRNFH S DE+HL*TTKGHGGFGSSTNRT LG+TSG +SYFNRIKKFM *SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHC+ Subject 60 AG*ECVREGTGRLFTSPISTFYRSAFRGF*GGQT*SG*QA*KNF*YRRNFH*SRDEYHL*TTKGHGGFGSSTNRTRLGHTSGGDSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCQ 524
Range 3: 307 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(360) | 0.0 | 72/72(100%) | 0/72(0%) | Minus/Plus |
Query 27 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 242 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV Subject 307 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 522
Range 4: 58 to 258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.2 bits(321) | 0.0 | 62/67(93%) | 0/67(0%) | Minus/Plus |
Query 291 LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 491 L D NVFVKGPGGYSLRQSRPSTGQR GD+EVARRE+GDKLKRTFNIAEIFTNPEMNIIFEPPKDME Subject 58 LPDENVFVKGPGGYSLRQSRPSTGQRSGDSEVARREVGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 258
Range 5: 59 to 523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 140/155(90%) | 0/155(0%) | Minus/Plus |
Query 26 CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 490 C MRMCS*RDREVI FANLDL +VSV GILR PD KWVTSLKELLISQKFS I R* SSLNHQRTWRFR**YQPD AW HQR +QLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS Subject 59 CRMRMCS*RDREVIHFANLDLLQVSVQGILRWPDVKWVTSLKELLISQKFSLIPR*ISSLNHQRTWRFR**YQPDPAWSHQRWRQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 523
Range 6: 306 to 521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 72/72(100%) | 0/72(0%) | Plus/Minus |
Query 28 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 243 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA Subject 306 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 521
Range 7: 57 to 257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 60/67(90%) | 0/67(0%) | Plus/Minus |
Query 292 SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK 492 SMSFGGSKM+FISG VKISAILKVLLSLSP SRLATS SP R*PVEGRDWRSE*PPGPFTNTF+S K Subject 57 SMSFGGSKMIFISGLVKISAILKVLLSLSPTSRLATSESPER*PVEGRDWRSE*PPGPFTNTFSSGK 257
Range 8: 332 to 520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 62/63(98%) | 0/63(0%) | Plus/Minus |
Query 29 QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF 217 QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQ INF Subject 332 QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQHINF 520
Range 9: 56 to 238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 49/61(80%) | 0/61(0%) | Plus/Minus |
Query 311 QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK 493 QR* SS+D *KFLRY*KFF*ACHP VW PQ PL+AD KVEIGE NNLPVPSRTHSHPA+ Subject 56 QR*YSSRD**KFLRY*KFF*ACHPLHVWPPQNPLNADL*KVEIGEVNNLPVPSRTHSHPAR 238
Grapevine leafroll associated virus 1 isolate 130 coat protein (CP) gene, partial cds
Sequence ID: KU362276.1 Length: 599 Number of Matches: 9
Range 1: 58 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.4 bits(730) | 0.0 | 136/155(88%) | 0/155(0%) | Plus/Minus |
Query 27 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ 491 DNGPFNLLISQFPLAVTI*IHKIL FALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSC +RWC+QA SGWYYYRNLH+LWWFKDD+HL I ENFCDIKSSFKLVTHF SGYL IP*TL+ RSRLA ITSRSLHEHI I+Q Subject 58 DNGPFNLLISQFPLAVTI*IHKILLFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCRHRWCDQAGSGWYYYRNLHILWWFKDDIHLGISENFCDIKSSFKLVTHFTSGYLRIP*TLSCRRSRLAM*ITSRSLHEHILIRQ 522
Range 2: 60 to 524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
304.9 bits(659) | 0.0 | 137/155(88%) | 0/155(0%) | Minus/Plus |
Query 25 AGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR 489 AG ECVREGTGRLF SPISTF SA RG+*GSQT NG*QA*KNF*YRRNFH S DE+HL*TTKG+GGFGSSTNRT LG+TSG +SYFNRIKKFM *SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQR VFCEFI**RRAEIDL*EG*RGHC+ Subject 60 AG*ECVREGTGRLFTSPISTFYSSAFRGF*GSQT*NG*QA*KNF*YRRNFH*SRDEYHL*TTKGYGGFGSSTNRTRLGHTSGGDSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRGVFCEFI**RRAEIDL*EG*RGHCQ 524
Range 3: 307 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(360) | 0.0 | 72/72(100%) | 0/72(0%) | Minus/Plus |
Query 27 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 242 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV Subject 307 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 522
Range 4: 58 to 258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.1 bits(312) | 0.0 | 61/67(91%) | 0/67(0%) | Minus/Plus |
Query 291 LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 491 L D NVFVKGPGGYS RQSRPST QR GD+EVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME Subject 58 LPDENVFVKGPGGYSHRQSRPSTAQRSGDSEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 258
Range 5: 59 to 523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.6 bits(617) | 0.0 | 137/155(88%) | 0/155(0%) | Minus/Plus |
Query 26 CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 490 C MRMCS*RDREVI ANLDL ++SV GILR*PD KWVTSLKELLISQKFS I R* SSLNHQR WRFR**YQPD AW HQR +QLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAK+SIL*IYIVTASGN*LMRRLKGPLS Subject 59 CRMRMCS*RDREVIHIANLDLLQLSVQGILR*PDVKWVTSLKELLISQKFSLIPR*ISSLNHQRIWRFR**YQPDPAWSHQRWRQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKRSIL*IYIVTASGN*LMRRLKGPLS 523
Range 6: 306 to 521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 72/72(100%) | 0/72(0%) | Plus/Minus |
Query 28 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 243 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA Subject 306 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 521
Range 7: 57 to 257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 58/67(87%) | 0/67(0%) | Plus/Minus |
Query 292 SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK 492 S+SFGGSKM+FISG VKISAILKVLLSLSPISRLATS SP R* VEGRDWR E*PPGPFTNTF+S K Subject 57 SISFGGSKMIFISGLVKISAILKVLLSLSPISRLATSESPER*AVEGRDWRCE*PPGPFTNTFSSGK 257
Range 8: 332 to 520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 61/63(97%) | 0/63(0%) | Plus/Minus |
Query 29 QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF 217 QWPL*PSHKSISARRYYINSQNT LCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQ INF Subject 332 QWPL*PSHKSISARRYYINSQNTPLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQHINF 520
Range 9: 56 to 238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 49/61(80%) | 0/61(0%) | Plus/Minus |
Query 311 QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK 493 QR* SS+D *KFLRY*KFF*ACHPF VWLPQ PL+A+ KVEIG+ NNLPVPSRTHSHPA+ Subject 56 QR*YSSRD**KFLRY*KFF*ACHPFHVWLPQNPLNAEL*KVEIGDVNNLPVPSRTHSHPAR 238
Grapevine leafroll associated virus 1 isolate 147 coat protein (CP) gene, partial cds
Sequence ID: KU362278.1 Length: 599 Number of Matches: 9
Range 1: 58 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.4 bits(730) | 0.0 | 136/155(88%) | 0/155(0%) | Plus/Minus |
Query 27 DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ 491 DNGPFNLLISQFPLAVTI*IHKIL FALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFS *IF*FC*NSC +RWC+QA SGWYYYRNLH+LWWFKDD+HL I ENFCDIKSSFKLVTHF SGYL IP*TL+ RSRLA ITSRSLHEHI I+Q Subject 58 DNGPFNLLISQFPLAVTI*IHKILLFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFST*IF*FC*NSCRHRWCDQAGSGWYYYRNLHILWWFKDDIHLGISENFCDIKSSFKLVTHFTSGYLRIP*TLSCRRSRLAM*ITSRSLHEHILIRQ 522
Range 2: 60 to 524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
304.9 bits(659) | 0.0 | 137/155(88%) | 0/155(0%) | Minus/Plus |
Query 25 AGCECVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCR 489 AG ECVREGTGRLF SPISTF SA RG+*GSQT NG*QA*KNF*YRRNFH S DE+HL*TTKG+GGFGSSTNRT LG+TSG +SYFNRIKKFM *SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQR VFCEFI**RRAEIDL*EG*RGHC+ Subject 60 AG*ECVREGTGRLFTSPISTFYSSAFRGF*GSQT*NG*QA*KNF*YRRNFH*SRDEYHL*TTKGYGGFGSSTNRTRLGHTSGGDSYFNRIKKFMC*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRGVFCEFI**RRAEIDL*EG*RGHCQ 524
Range 3: 307 to 522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(360) | 0.0 | 72/72(100%) | 0/72(0%) | Minus/Plus |
Query 27 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 242 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV Subject 307 ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV 522
Range 4: 58 to 258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.1 bits(312) | 0.0 | 61/67(91%) | 0/67(0%) | Minus/Plus |
Query 291 LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 491 L D NVFVKGPGGYS RQSRPST QR GD+EVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME Subject 58 LPDENVFVKGPGGYSHRQSRPSTAQRSGDSEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME 258
Range 5: 59 to 523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.6 bits(617) | 0.0 | 137/155(88%) | 0/155(0%) | Minus/Plus |
Query 26 CWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAWLHXXXXXXXXQN*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS 490 C MRMCS*RDREVI ANLDL ++SV GILR*PD KWVTSLKELLISQKFS I R* SSLNHQR WRFR**YQPD AW HQR +QLFQQN*KIY LK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAK+SIL*IYIVTASGN*LMRRLKGPLS Subject 59 CRMRMCS*RDREVIHIANLDLLQLSVQGILR*PDVKWVTSLKELLISQKFSLIPR*ISSLNHQRIWRFR**YQPDPAWSHQRWRQLFQQN*KIYVLK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKRSIL*IYIVTASGN*LMRRLKGPLS 523
Range 6: 306 to 521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 72/72(100%) | 0/72(0%) | Plus/Minus |
Query 28 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 243 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA Subject 306 TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA 521
Range 7: 57 to 257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 58/67(87%) | 0/67(0%) | Plus/Minus |
Query 292 SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK 492 S+SFGGSKM+FISG VKISAILKVLLSLSPISRLATS SP R* VEGRDWR E*PPGPFTNTF+S K Subject 57 SISFGGSKMIFISGLVKISAILKVLLSLSPISRLATSESPER*AVEGRDWRCE*PPGPFTNTFSSGK 257
Range 8: 332 to 520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 61/63(97%) | 0/63(0%) | Plus/Minus |
Query 29 QWPL*PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF 217 QWPL*PSHKSISARRYYINSQNT LCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQ INF Subject 332 QWPL*PSHKSISARRYYINSQNTPLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQHINF 520
Range 9: 56 to 238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 49/61(80%) | 0/61(0%) | Plus/Minus |
Query 311 QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK 493 QR* SS+D *KFLRY*KFF*ACHPF VWLPQ PL+A+ KVEIG+ NNLPVPSRTHSHPA+ Subject 56 QR*YSSRD**KFLRY*KFF*ACHPFHVWLPQNPLNAEL*KVEIGDVNNLPVPSRTHSHPAR 238
Nucleotide Sequence (425 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
289.3 | 1059.4 | 24% | 1.826e-76 | 59% | JQ023131.1 | |
289.3 | 1059.4 | 24% | 1.826e-76 | 59% | NC_016509.1 | |
287.9 | 1077.2 | 23% | 4.734e-76 | 61% | KU674796.1 | |
287.9 | 1086.4 | 23% | 4.734e-76 | 61% | KU674797.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 3221 to 3616 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.3 bits(625) | 0.0 | 123/132(93%) | 0/132(0%) | Plus/Plus |
Query 27 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDIL 422 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ MRA EKAKAE KGLEVD ++ITEDDIL Subject 3221 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSMRAAEKAKAESKGLEVDEREITEDDIL 3616
Range 2: 3211 to 3528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 89/106(84%) | 0/106(0%) | Minus/Minus |
Query 17 RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK 334 RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKT+QFH + Subject 3211 RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTIQFHKFPR 3528
Range 3: 3221 to 3619 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 79/133(59%) | 0/133(0%) | Minus/Minus |
Query 27 RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ 425 RQ+II I+ F L RL H QN V + ILSDL++RPV ++QPVSH +LIQ* RSISET + RHQM*R+ GR TYE KIL+HQ++Q+RP LQH QS+L+HPRKERATKLPYDQ+D IPQ Subject 3221 RQDIIFSDFSLINLQTFALSLRLFCGSHAPQNFVRFTN*ILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RHRGRNRTYEPKILIHQHVQIRPQRLQHSQSVLIHPRKERATKLPYDQNDTIPQ 3619
Range 4: 3222 to 3530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 67/103(65%) | 0/103(0%) | Plus/Plus |
Query 28 CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF* 336 CGI S *SYGSFVALSFRG* S L* CCR G W *W +IF SYV++ P+ RYIWWR+ VSLIDR YWMR *WLTGC TGR RSLRI + T+F* Subject 3222 CGIVSF*SYGSFVALSFRG*MSTL*LCCRRWGLIWTC*WIKIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRI*FVKRTKF* 3530
Range 5: 3217 to 3486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 60/90(67%) | 0/90(0%) | Plus/Plus |
Query 23 DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH 292 ++VEL+R DRTEAL*LFLFGDE V FD AG V G DG +FSVRTY + H ATSGGG+ LFH**IDVIG*G +GLQVA RDE+ Subject 3217 ELVELYRFDRTEAL*LFLFGDE*VRFDYVAGAGV*SGRVDGSKFSVRTYGSCHGDATSGGGDQPLFH**IDVIG*GFDGLQVAPP*RDEY 3486
Range 6: 3234 to 3464 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 53/77(69%) | 0/77(0%) | Minus/Minus |
Query 40 ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRR 270 ATCKP PHPITSIYQ*N+ PPPDVA W YVRTEN PS P T PA SK T SSPKRKSYKASVRS+R Subject 3234 ATCKPSNPHPITSIYQ*NKGWSPPPDVASPWQEPYVRTENFDPSTRPD*TPAPAT*SKRTHSSPKRKSYKASVRSKR 3464
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6
Range 1: 3221 to 3616 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.3 bits(625) | 0.0 | 123/132(93%) | 0/132(0%) | Plus/Plus |
Query 27 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDIL 422 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ MRA EKAKAE KGLEVD ++ITEDDIL Subject 3221 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSMRAAEKAKAESKGLEVDEREITEDDIL 3616
Range 2: 3211 to 3528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 89/106(84%) | 0/106(0%) | Minus/Minus |
Query 17 RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK 334 RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKT+QFH + Subject 3211 RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTIQFHKFPR 3528
Range 3: 3221 to 3619 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 79/133(59%) | 0/133(0%) | Minus/Minus |
Query 27 RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ 425 RQ+II I+ F L RL H QN V + ILSDL++RPV ++QPVSH +LIQ* RSISET + RHQM*R+ GR TYE KIL+HQ++Q+RP LQH QS+L+HPRKERATKLPYDQ+D IPQ Subject 3221 RQDIIFSDFSLINLQTFALSLRLFCGSHAPQNFVRFTN*ILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RHRGRNRTYEPKILIHQHVQIRPQRLQHSQSVLIHPRKERATKLPYDQNDTIPQ 3619
Range 4: 3222 to 3530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 67/103(65%) | 0/103(0%) | Plus/Plus |
Query 28 CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF* 336 CGI S *SYGSFVALSFRG* S L* CCR G W *W +IF SYV++ P+ RYIWWR+ VSLIDR YWMR *WLTGC TGR RSLRI + T+F* Subject 3222 CGIVSF*SYGSFVALSFRG*MSTL*LCCRRWGLIWTC*WIKIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRI*FVKRTKF* 3530
Range 5: 3217 to 3486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 60/90(67%) | 0/90(0%) | Plus/Plus |
Query 23 DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH 292 ++VEL+R DRTEAL*LFLFGDE V FD AG V G DG +FSVRTY + H ATSGGG+ LFH**IDVIG*G +GLQVA RDE+ Subject 3217 ELVELYRFDRTEAL*LFLFGDE*VRFDYVAGAGV*SGRVDGSKFSVRTYGSCHGDATSGGGDQPLFH**IDVIG*GFDGLQVAPP*RDEY 3486
Range 6: 3234 to 3464 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 53/77(69%) | 0/77(0%) | Minus/Minus |
Query 40 ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRR 270 ATCKP PHPITSIYQ*N+ PPPDVA W YVRTEN PS P T PA SK T SSPKRKSYKASVRS+R Subject 3234 ATCKPSNPHPITSIYQ*NKGWSPPPDVASPWQEPYVRTENFDPSTRPD*TPAPAT*SKRTHSSPKRKSYKASVRSKR 3464
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6
Range 1: 3297 to 3695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.9 bits(622) | 0.0 | 122/133(92%) | 0/133(0%) | Plus/Plus |
Query 27 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDILA 425 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ RA EKAKAE KGLEVD +++TEDDILA Subject 3297 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSKRAAEKAKAESKGLEVDEREVTEDDILA 3695
Range 2: 3287 to 3604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 89/106(84%) | 0/106(0%) | Minus/Minus |
Query 17 RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK 334 RIL ASRTRSLATL+FVP RRCNL*AI PSS+N+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKTMQFH + + Subject 3287 RILCASRTRSLATLIFVPLRRCNL*AIKPSSSNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTMQFHKLPR 3604
Range 3: 3297 to 3695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 81/133(61%) | 0/133(0%) | Minus/Minus |
Query 27 RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ 425 RQ+II ++ F LG RL SP QNL+ ++ILSDL++RPV ++QPVSH +LIQ* RSISET + RHQM*R GR TY+ KIL+HQ++Q+RP* LQH QS+L+HPRKERATKLP DQDDAIPQ Subject 3297 RQDIIFSDFSLVNLQTFTLGLRLFCSPFAPQNLMRFTNKILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RYRGRNRTYKPKILIHQHVQIRP*RLQHSQSVLIHPRKERATKLPNDQDDAIPQ 3695
Range 4: 3298 to 3621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 71/108(66%) | 0/108(0%) | Plus/Plus |
Query 28 CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF*SL*GL 351 CGIASS*S+GSFVALSFRG* S L* CCR *G W *W RIF YV++ P+ RYIWWR+ VSLIDR YWMR *WLTGC TGR RSLRI + RF* GL Subject 3298 CGIASS*SFGSFVALSFRG*MSTL*LCCRR*GLIWTC*WIRIFGLYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRILFVKRIRF*GAKGL 3621
Range 5: 3296 to 3562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 61/89(69%) | 0/89(0%) | Plus/Plus |
Query 26 VVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH 292 +VELHRLDR+EAL*LFLFGDE V FD AG RV G DG EFSV TY + H ATSGGG+ LFH**IDV G*G +GLQVA RDE+ Subject 3296 LVELHRLDRSEAL*LFLFGDE*VRFDYVAGARV*SGRVDGSEFSVCTYGSCHGNATSGGGDQPLFH**IDVTG*GFDGLQVAPP*RDEY 3562
Range 6: 3307 to 3540 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 54/78(69%) | 0/78(0%) | Minus/Minus |
Query 37 ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRRC 270 ATCKP PHP+TSIYQ*N+ PPPDVA W YV+TENS PS P TL PA SK T SSPKRKSYKAS RSRRC Subject 3307 ATCKPSNPHPVTSIYQ*NKGWSPPPDVALPWQEPYVQTENSDPSTRPD*TLAPAT*SKRTHSSPKRKSYKASERSRRC 3540
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6
Range 1: 3362 to 3760 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.9 bits(622) | 0.0 | 122/133(92%) | 0/133(0%) | Plus/Plus |
Query 27 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDILA 425 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ RA EKAKAE KGLEVD +++TEDDILA Subject 3362 LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSKRAAEKAKAESKGLEVDEREVTEDDILA 3760
Range 2: 3352 to 3669 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 90/106(85%) | 0/106(0%) | Minus/Minus |
Query 17 RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK 334 RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKTMQFH + Subject 3352 RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPNACNIVKAYSFIPEKKELQSFRTIKTMQFHKFPR 3669
Range 3: 3362 to 3760 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 81/133(61%) | 0/133(0%) | Minus/Minus |
Query 27 RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ 425 RQ+II I+ F LG RL P QNL+ + ILSDL++RP+ +MQPVSH +LIQ* RSISET + RHQM*R GR TYE KIL+HQ++Q+RP* LQH QS+L+HPRKERATKLPYDQD+A+PQ Subject 3362 RQDIIFSDFSLINLQTFTLGLRLFCGPFAPQNLMRFTN*ILSDLDIRPITEMQPVSHQTLIQ*HRSISETRVGLRHQM*RYRGRNRTYEPKILIHQHVQIRP*RLQHRQSVLIHPRKERATKLPYDQDNAVPQ 3760
Range 4: 3363 to 3683 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 70/107(65%) | 0/107(0%) | Plus/Plus |
Query 28 CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF*SL*G 348 CG A S*SYGSFVALSFRG* S L*+CCR *G W *W RIF SYV++ P+ RYIWWR+ VSLIDR YWMR *WLTGCI GR RSLRI + RF* G Subject 3363 CGTALS*SYGSFVALSFRG*MSTL*RCCRR*GLIWTC*WIRIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCISVMGRISRSLRI*FVKRIRF*GAKG 3683
Range 5: 3358 to 3627 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 63/90(70%) | 0/90(0%) | Plus/Plus |
Query 23 DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH 292 ++VELH LDRTEAL*LFLFGDE V FD+ AG+RV G DG EFSVRTY + H ATSGGG+ LFH**IDVIG*G +GLQVAS DE+ Subject 3358 ELVELHCLDRTEAL*LFLFGDE*VRFDDVAGVRV*SGRVDGSEFSVRTYGSCHGNATSGGGDQPLFH**IDVIG*GFDGLQVASP*WDEY 3627
Range 6: 3372 to 3605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.5 bits(272) | 0.0 | 56/78(72%) | 0/78(0%) | Minus/Minus |
Query 37 ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRRC 270 ATCKP PHPITSIYQ*N+ PPPDVA W YVRTENS PS P TL PA SK T SSPKRKSYKASVRSR+C Subject 3372 ATCKPSNPHPITSIYQ*NKGWSPPPDVALPWQEPYVRTENSDPSTRPD*TLTPATSSKRTHSSPKRKSYKASVRSRQC 3605
Nucleotide Sequence (792 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
45.1 | 290.3 | 22% | 3.228e-07 | 42% | KU674796.1 | |
46.0 | 182.2 | 16% | 1.344e-06 | 38% | KU674797.1 | |
45.1 | 173.0 | 16% | 0.0001668 | 36% | JQ023131.1 | |
45.1 | 173.0 | 16% | 0.0001668 | 36% | NC_016509.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8
Range 1: 852 to 914 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 16/21(76%) | 0/21(0%) | Plus/Minus |
Query 4 KIFLNGNQIFLSEDGFDCHIF 66 KIFL+GNQ+FLSEDG +CH F Subject 852 KIFLDGNQVFLSEDGLNCHDF 914
Range 2: 326 to 460 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 19/45(42%) | 0/45(0%) | Plus/Minus |
Query 521 QESQKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT 655 + ++RK R + +E KL RP* KGNEK ++ K *EG ++T Subject 326 ENKKERKEKEKR*KSKEKKLVLRP*VKGNEKGEVKKW*EGSDIST 460
Range 3: 261 to 332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 12/24(50%) | 0/24(0%) | Plus/Minus |
Query 714 *HSGEKGKIAKRTRRNRQNVFLFV 785 *HS EKGK +R+RR ++ FV Subject 261 *HSREKGKKRRRSRRIKR*SMCFV 332
Range 4: 853 to 915 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 17/21(81%) | 0/21(0%) | Plus/Minus |
Query 3 ENLFEWKSNLLERRWV*LPYF 65 ENLF WKS+LLERRW *LP F Subject 853 ENLFGWKSSLLERRWT*LP*F 915
Range 5: 196 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 19/42(45%) | 0/42(0%) | Plus/Minus |
Query 530 QKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT 655 +KRK + + +EMK RP*KKGNEK + *EG ++T Subject 196 RKRKEEEKK*KNKEMKYVLRP*KKGNEKADVRGW*EGSGIST 321
Range 6: 852 to 917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 20/22(91%) | 0/22(0%) | Minus/Plus |
Query 1 KNMAVKPIFAQEDLISIQKDFR 66 K MAVK IFAQEDLISIQKDFR Subject 852 KIMAVKSIFAQEDLISIQKDFR 917
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 5
Range 1: 917 to 979 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 16/21(76%) | 0/21(0%) | Plus/Minus |
Query 4 KIFLNGNQIFLSEDGFDCHIF 66 KIFLNGNQ+F+SEDG +CH F Subject 917 KIFLNGNQVFVSEDGLNCHDF 979
Range 2: 196 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 19/42(45%) | 0/42(0%) | Plus/Minus |
Query 530 QKRK*TVGRQRKEEMKLNRRP*KKGNEKEKIMKR*EGRAVNT 655 +KRK + EMK RP*KKGNEK + + *EG ++T Subject 196 RKRKEKKKK*ESREMKCVLRP*KKGNEKGDVREW*EGSGIST 321
Range 3: 918 to 980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 17/21(81%) | 0/21(0%) | Plus/Minus |
Query 3 ENLFEWKSNLLERRWV*LPYF 65 ENLFEWKS+L ERRW *LP F Subject 918 ENLFEWKSSLRERRWT*LP*F 980
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 5
Range 1: 776 to 841 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 20/22(91%) | 0/22(0%) | Minus/Plus |
Query 1 KNMAVKPIFAQEDLISIQKDFR 66 K MAVK IFAQEDLISIQKDFR Subject 776 KIMAVKSIFAQEDLISIQKDFR 841
Range 2: 132 to 203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 13/24(54%) | 0/24(0%) | Minus/Plus |
Query 572 SPFLSFHYLFFFVSFLSRTAIQLH 643 +PF YL FVSFLS T LH Subject 132 TPFSLPFYLSLFVSFLSGTKYILH 203
Range 3: 332 to 436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 15/35(43%) | 0/35(0%) | Minus/Plus |
Query 197 FSLVFTLSFLRFLC*VFFAPFYPSLSIAFPF*LSF 301 FSL+F+L L FL +FF Y S F +SF Subject 332 FSLLFSLFSLSFLSFLFFI*LYLSAFFLFVSFISF 436
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 5
Range 1: 776 to 841 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 20/22(91%) | 0/22(0%) | Minus/Plus |
Query 1 KNMAVKPIFAQEDLISIQKDFR 66 K MAVK IFAQEDLISIQKDFR Subject 776 KIMAVKSIFAQEDLISIQKDFR 841
Range 2: 132 to 203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 13/24(54%) | 0/24(0%) | Minus/Plus |
Query 572 SPFLSFHYLFFFVSFLSRTAIQLH 643 +PF YL FVSFLS T LH Subject 132 TPFSLPFYLSLFVSFLSGTKYILH 203
Range 3: 332 to 436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 15/35(43%) | 0/35(0%) | Minus/Plus |
Query 197 FSLVFTLSFLRFLC*VFFAPFYPSLSIAFPF*LSF 301 FSL+F+L L FL +FF Y S F +SF Subject 332 FSLLFSLFSLSFLSFLFFI*LYLSAFFLFVSFISF 436
Nucleotide Sequence (388 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
237.2 | 861.6 | 27% | 7.436e-61 | 62% | KU674796.1 | |
237.2 | 850.6 | 27% | 7.436e-61 | 62% | KU674797.1 | |
233.1 | 818.5 | 26% | 1.269e-59 | 60% | JQ023131.1 | |
233.1 | 818.5 | 26% | 1.269e-59 | 60% | NC_016509.1 | |
111.7 | 111.7 | 27% | 4.575e-23 | 43% | LC052212.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6
Range 1: 1971 to 2300 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.2 bits(515) | 0.0 | 106/110(96%) | 0/110(0%) | Plus/Plus |
Query 2 IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAV SC Subject 1971 MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC 2300
Range 2: 1970 to 2299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 96/110(87%) | 0/110(0%) | Minus/Minus |
Query 1 HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM 330 H+RTALHKL ELETLS+KVM SSGKALVKLSLAPALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSFNTS LAIVDTIPSNRSS* +ALLTLATRLCCPP A+ Subject 1970 HERTALHKLCELETLSKKVMNSSGKALVKLSLAPALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFNTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI 2299
Range 3: 1971 to 2300 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 73/110(66%) | 0/110(0%) | Minus/Minus |
Query 2 A**DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN 331 A* + V *TVR RNTI+KSYE FWKSSRQ P TKR+ H+A ILL Q +LLHHEQFR LLV++RHQ A F Q+ PVG C*YYP E*IFLI+RIT+A H LLP F R+ Subject 1971 A*TNSVT*TVRARNTIQKSYE*FWKSSRQTFFSPGTKRYRHDALILLPQRILLHHEQFRNLLVEVRHQRAPFFQY*PVGNC*YYPFE*IFLIKRITYACHQALLPPFSRH 2300
Range 4: 1976 to 2299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 68/108(63%) | 0/108(0%) | Plus/Plus |
Query 7 GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQRRPIM 330 G R ATE G R+*C S RSIR DSINN Q A +E R H GDA RED TVHDEGG+ GEEE*+R D A*CRG + DESFSRT HNF *CFE +QFM R M Subject 1976 G*RGATEPGGKRK*CA*SGRSIRRDSINNCQPASIERREHAGDAPRREDFGTVHDEGGYAGEEE*VRRDGSA*CRG*RKFDESFSRTIHNFFG*CFELAQFM*RCSFM 2299
Range 5: 1975 to 2136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 36/54(67%) | 0/54(0%) | Plus/Plus |
Query 6 R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS 167 R K GNR W A*VMR I+KIYS+G*YQQ PTG *+K A W*R TRR+ NCS Subject 1975 RLKGGNRAWWQA*VMRLIRKIYSKG*YQQLPTG*Y*KKGARW*RTSTRRFRNCS 2136
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6
Range 1: 2036 to 2365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.2 bits(515) | 0.0 | 106/110(96%) | 0/110(0%) | Plus/Plus |
Query 2 IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAV SC Subject 2036 MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC 2365
Range 2: 2035 to 2364 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.3 bits(468) | 0.0 | 96/110(87%) | 0/110(0%) | Minus/Minus |
Query 1 HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM 330 H+RTALHKL ELETLS+KVM SSGKALVKLSLAPALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP AM Subject 2035 HERTALHKLCELETLSKKVMNSSGKALVKLSLAPALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAM 2364
Range 3: 2036 to 2365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 72/110(65%) | 0/110(0%) | Minus/Minus |
Query 2 A**DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN 331 A* + V *TVR RNTI+KSYE FWKSSRQ P TKR+ H+A ILL Q +LLHHEQFR LLV++RHQ A F Q+ PV C*YYP E*IFLI+RIT+A H LLP F R+ Subject 2036 A*TNSVT*TVRARNTIQKSYE*FWKSSRQTFFSPGTKRYRHDALILLPQRILLHHEQFRNLLVEVRHQRAPFFQY*PVSNC*YYPFE*IFLIKRITYACHQALLPPFSRH 2365
Range 4: 2035 to 2364 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 68/110(62%) | 0/110(0%) | Plus/Plus |
Query 1 HCGKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQRRPIM 330 H G R ATE G R+*C S RSIR DSINN A E R H GDA RED TVHDEGG+ GEEE*+R D A*CRG + DESFSRT HNF *CFE +QFM R M Subject 2035 HGG*RGATEPGGKRK*CA*SGRSIRRDSINNC*PASTERREHAGDAPRREDFGTVHDEGGYAGEEE*VRRDGSA*CRG*RKFDESFSRTIHNFFG*CFELAQFM*RCSFM 2364
Range 5: 2040 to 2201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 35/54(65%) | 0/54(0%) | Plus/Plus |
Query 6 R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS 167 R K GNR W A*VMR I+KIYS+G*YQQ TG *+K A W*R TRR+ NCS Subject 2040 RLKGGNRAWWQA*VMRLIRKIYSKG*YQQLLTG*Y*KKGARW*RTSTRRFRNCS 2201
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 1895 to 2224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.1 bits(506) | 0.0 | 105/110(95%) | 0/110(0%) | Plus/Plus |
Query 2 IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSA AKESLTRAFPELFITFLDSVSSSHSLCNAV SC Subject 1895 MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC 2224
Range 2: 1894 to 2223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 94/110(85%) | 0/110(0%) | Minus/Minus |
Query 1 HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM 330 H+RTALHKL ELETLS+KV+KSSGKALVKLSLA ALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP A+ Subject 1894 HERTALHKLCELETLSKKVIKSSGKALVKLSLATALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI 2223
Range 3: 1895 to 2215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 68/107(64%) | 0/107(0%) | Minus/Minus |
Query 2 DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN 322 + V *TVR RNTI+K Y+KFWKSSRQ TKR+ H+A ILL QC+LLHHEQ R LLV++RHQ A F Q+ PV C*YYP E*IFLI+RIT+A H LLP F R+ Subject 1895 NSVT*TVRARNTIQKGYKKFWKSSRQTFFSHSTKRYRHDALILLPQCILLHHEQLRNLLVEVRHQCAPFFQY*PVSNC*YYPFE*IFLIERITYACHQALLPPFSRH 2215
Range 4: 1900 to 2211 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 63/104(61%) | 0/104(0%) | Plus/Plus |
Query 7 GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQR 318 G R ATE G R+*C +S RSIR DSINN A E R H GDA RED VHDEGG+ GEEE*+R D A*C G + DESFSRTF+N *CFE +QFM R Subject 1900 G*RGATEPGGKRK*CAQSGRSIRRDSINNC*PASTERREHTGDAPRREDFGAVHDEGGYTGEEE*VRRDGSA*CCG*RKFDESFSRTFYNLFG*CFELAQFM*R 2211
Range 5: 1899 to 2060 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 34/54(63%) | 0/54(0%) | Plus/Plus |
Query 6 R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS 167 R K GNR W A*VMR I+KIYS+G*YQQ TG *+K A W*R TRR+ +CS Subject 1899 RLKGGNRAWWQA*VMRSIRKIYSKG*YQQLLTG*Y*KKGAHW*RTSTRRFRSCS 2060
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6
Range 1: 1895 to 2224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.1 bits(506) | 0.0 | 105/110(95%) | 0/110(0%) | Plus/Plus |
Query 2 IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSA AKESLTRAFPELFITFLDSVSSSHSLCNAV SC Subject 1895 MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC 2224
Range 2: 1894 to 2223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 94/110(85%) | 0/110(0%) | Minus/Minus |
Query 1 HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM 330 H+RTALHKL ELETLS+KV+KSSGKALVKLSLA ALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP A+ Subject 1894 HERTALHKLCELETLSKKVIKSSGKALVKLSLATALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI 2223
Range 3: 1895 to 2215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 68/107(64%) | 0/107(0%) | Minus/Minus |
Query 2 DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN 322 + V *TVR RNTI+K Y+KFWKSSRQ TKR+ H+A ILL QC+LLHHEQ R LLV++RHQ A F Q+ PV C*YYP E*IFLI+RIT+A H LLP F R+ Subject 1895 NSVT*TVRARNTIQKGYKKFWKSSRQTFFSHSTKRYRHDALILLPQCILLHHEQLRNLLVEVRHQCAPFFQY*PVSNC*YYPFE*IFLIERITYACHQALLPPFSRH 2215
Range 4: 1900 to 2211 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 63/104(61%) | 0/104(0%) | Plus/Plus |
Query 7 GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQR 318 G R ATE G R+*C +S RSIR DSINN A E R H GDA RED VHDEGG+ GEEE*+R D A*C G + DESFSRTF+N *CFE +QFM R Subject 1900 G*RGATEPGGKRK*CAQSGRSIRRDSINNC*PASTERREHTGDAPRREDFGAVHDEGGYTGEEE*VRRDGSA*CCG*RKFDESFSRTFYNLFG*CFELAQFM*R 2211
Range 5: 1899 to 2060 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 34/54(63%) | 0/54(0%) | Plus/Plus |
Query 6 R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS 167 R K GNR W A*VMR I+KIYS+G*YQQ TG *+K A W*R TRR+ +CS Subject 1899 RLKGGNRAWWQA*VMRSIRKIYSKG*YQQLLTG*Y*KKGAHW*RTSTRRFRSCS 2060
Grapevine leafroll associated virus 13 genomic RNA, complete genome, isolate: a177
Sequence ID: LC052212.1 Length: 17608 Number of Matches: 1
Range 1: 2445 to 2762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.7 bits(239) | 0.0 | 46/106(43%) | 0/106(0%) | Plus/Plus |
Query 14 GGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC 331 GG S +AS+S AL ED+F+G+VS++AN++ LKEGS ++ LD ++ + K + L K + +L+ K LT+ FPEL + F DSV SSH +CNAV C Subject 2445 GGSNSFMASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPSVTINPSLTTTEKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMC 2762
Nucleotide Sequence (345 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
232.5 | 946.6 | 30% | 1.621e-59 | 56% | GU812894.1 | |
234.8 | 973.2 | 30% | 3.368e-60 | 60% | KU674796.1 | |
234.8 | 967.3 | 30% | 3.368e-60 | 59% | KU674797.1 | |
231.5 | 917.3 | 30% | 3.111e-59 | 56% | JQ023131.1 | |
231.5 | 917.3 | 30% | 3.111e-59 | 56% | NC_016509.1 |
Alignments
Grapevine leafroll associated virus 1 isolate CN308 1 RNA dependent RNA polymerase gene, partial cds
Sequence ID: GU812894.1 Length: 998 Number of Matches: 6
Range 1: 297 to 611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.5 bits(501) | 0.0 | 98/105(93%) | 0/105(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS 315 RSSMAKQSLWARLRSFVY LSAMTRYKLMVK+DAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQ++VLAYHGMST+DFSREV ERLGD+S Subject 297 RSSMAKQSLWARLRSFVYGLSAMTRYKLMVKSDAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQAKVLAYHGMSTEDFSREVGERLGDVS 611
Range 2: 299 to 610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.3 bits(468) | 0.0 | 89/104(86%) | 0/104(0%) | Minus/Minus |
Query 3 EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED 314 + SPSLS TSRLKSSVDIPWYAKT CSTYFNLSTACVKMCENIAVIALSWYT+FCPVTYCC GVESNFGLAS T+SL*RVIAD+ T +RKRAHNDCLAIED Subject 299 DTSPSLSPTSRLKSSVDIPWYAKTFACSTYFNLSTACVKMCENIAVIALSWYTMFCPVTYCCKGVESNFGLASDLTISL*RVIADRP*TKDRKRAHNDCLAIED 610
Range 3: 297 to 605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 63/103(61%) | 0/103(0%) | Minus/Minus |
Query 1 VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP 309 +PQS +NL+T+V HT+V *D RLQHIFQPLD L +DV*KHR YS VVVHN+L VLL R IQLR + L H+L+T H Q + +R Q SPQ LLSHRRP Subject 297 IPQSFTNLATEVFC*HTVVC*DFRLQHIFQPLDSLRKDV*KHRSYSSVVVHNVLPCNVLL*RRGIQLRFGV*LNHKLITSHCRQTVDKRPQTSPQRLLSHRRP 605
Range 4: 298 to 603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 58/102(57%) | 0/102(0%) | Plus/Plus |
Query 2 GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG 307 GLLWLSS CGL C +C++* V S W Q +RSWI SST + LCTTT L* RCFHTS + SRG*NMCC R+S* T VC T V RL +DWG Subject 298 GLLWLSSRCGLVCGLLSTVCRQ*LVISLWLSQTPNRSWIPRLYSSTLQGKTLCTTTEL*LRCFHTSLRKLSRG*NMCCKRKS*HTTVCQQKTSVARLVKDWG 603
Range 5: 299 to 622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 61/108(56%) | 0/108(0%) | Plus/Plus |
Query 3 VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGGHLSPKH 326 VFYG*AV+VGS A+ + V +D+L A+G R EVGF+ AVR R ++CVPRQ YN DVFTHL+ REVEICAA ESLS+P YV L SRG +TGG + H Subject 299 VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGFHAFTAVRYRAKHCVPRQSYNCDVFTHLYASCREVEICAASESLSIPRYVNRRLQSRGW*KTGGCVGLLH 622
Range 6: 298 to 603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 61/102(60%) | 0/102(0%) | Minus/Minus |
Query 2 PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT 307 PPV P D*S TY G LRLS+AAHISTSR *RCVKTS L* CRGTQ RTA NPTS L P*A N S T+ + +A+EPT TA*P*KT Subject 298 PPVFHQPRD*SLLLTYRGMLRLSLAAHISTSRQLA*RCVKTSQL*LCRGTQCFAL*RTAVKAWNPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT 603
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6
Range 1: 7945 to 8259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 99/105(94%) | 0/105(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS 315 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVL S+VLAYHGMST+DFSREV ERLGD+S Subject 7945 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLHSKVLAYHGMSTEDFSREVGERLGDVS 8259
Range 2: 7947 to 8258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.5 bits(477) | 0.0 | 90/104(87%) | 0/104(0%) | Minus/Minus |
Query 3 EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED 314 + SPSLS TSRLKSSVDIPWYAKT +CSTYFNLSTACVKMCENIAVIALSWYT+FCPVTYCC GVESNFGLAS T+SL*RVIAD+S T +RKRAHNDCLAIED Subject 7947 DTSPSLSPTSRLKSSVDIPWYAKTFECSTYFNLSTACVKMCENIAVIALSWYTMFCPVTYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED 8258
Range 3: 7945 to 8253 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 64/103(62%) | 0/103(0%) | Minus/Minus |
Query 1 VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP 309 +PQS SNL+T+V HT+V *D R+QHIFQPLDRL +DV*KHR YS VVV+N+L VLL R IQLR + L H+L+T H QI+ +R Q SPQ LLSHRRP Subject 7945 IPQSFSNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRCYSSVVVYNVLPCNVLL*RRGIQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP 8253
Range 4: 7947 to 8252 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 62/102(61%) | 0/102(0%) | Plus/Plus |
Query 3 VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG 308 VFYG*AV+VGS A+ + V +D+L A+G R EVGF+ AVR R E+C+PRQ YN DVFTHL+ GREVEICAA ESLS+P YV L SRG R+TGG Subject 7947 VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGFHAFTAVRYRAEHCIPRQSYNSDVFTHLYASGREVEICAAFESLSIPRYVNRRLQSRGWRKTGG 8252
Range 5: 7946 to 8251 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 61/102(60%) | 0/102(0%) | Plus/Plus |
Query 2 GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG 307 GLLWLSS CGL C IC++* V S W Q +RSWI SST R L TTT L*+RCFHTS +RSRG*NMCC R+S* T VC T V RLE+DWG Subject 7946 GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWIPRLYSSTLQGRTLYTTTEL*QRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLEKDWG 8251
Range 6: 7946 to 8251 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 63/102(62%) | 0/102(0%) | Minus/Minus |
Query 2 PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT 307 PPV L P D*S TY G LRLS AAHISTSRP *RCVKTS L* CRG Q S RTA NPTS L P*A N S T+ + +A+EPT TA*P*KT Subject 7946 PPVFLQPRD*SLLLTYRGMLRLSNAAHISTSRPLA*RCVKTSLL*LCRGIQCSAL*RTAVKAWNPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT 8251
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6
Range 1: 8010 to 8324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 99/105(94%) | 0/105(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS 315 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVL S+VLAYHGMST+DFSREV ERLGD+S Subject 8010 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLHSKVLAYHGMSTEDFSREVGERLGDVS 8324
Range 2: 8012 to 8323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.1 bits(474) | 0.0 | 89/104(86%) | 0/104(0%) | Minus/Minus |
Query 3 EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED 314 + SPSLS TSRLKSSVDIPWYAKT +CSTYFNLSTACVKMCENIAVIALSWYT+FCPVTYCC GVESNFGLAS T+SL*RVIAD+S T +R+RAHNDCLAIED Subject 8012 DTSPSLSPTSRLKSSVDIPWYAKTFECSTYFNLSTACVKMCENIAVIALSWYTMFCPVTYCCKGVESNFGLASDLTISL*RVIADRS*TKDRRRAHNDCLAIED 8323
Range 3: 8010 to 8318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 64/103(62%) | 0/103(0%) | Minus/Minus |
Query 1 VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP 309 +PQS +NL+T+V HT+V *D R+QHIFQPLDRL +DV*KHR YS VVVHN+L VLL R IQLR + L H+L+T H QI+ +R Q SPQ LLSHRRP Subject 8010 IPQSFANLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRGYSSVVVHNVLPCNVLL*RRGIQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP 8318
Range 4: 8011 to 8316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 60/102(59%) | 0/102(0%) | Plus/Plus |
Query 2 GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG 307 GLLWLSS CGL C IC++* V S W Q +RSWI SST + LCTTT L* RCFHTS +RSRG*NMCC R+S* T VC T V RL +DWG Subject 8011 GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWIPRLYSSTLQGKTLCTTTEL*PRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLAKDWG 8316
Range 5: 8012 to 8317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 62/102(61%) | 0/102(0%) | Plus/Plus |
Query 3 VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG 308 VFYG*AV+VGS A+ + V +D+L A+G R EVGF+ AVR R ++CVPRQ YN DVFTHL+ GREVEICAA ESLS+P YV L SRG R+TGG Subject 8012 VFYG*AVVVGSSAVFCLRSVGNDSL*AYG*VRRQTEVGFHAFTAVRYRAKHCVPRQSYNRDVFTHLYASGREVEICAAFESLSIPRYVNRRLQSRGWRKTGG 8317
Range 6: 8011 to 8316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 62/102(61%) | 0/102(0%) | Minus/Minus |
Query 2 PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT 307 PPV P D*S TY G LRLS AAHISTSRP *RCVKTS L* CRGTQ RTA NPTS L P*A N S T+ + +A EPT TA*P*KT Subject 8011 PPVFRQPRD*SLLLTYRGMLRLSNAAHISTSRPLA*RCVKTSRL*LCRGTQCFAL*RTAVKAWNPTSVWRLT*P*AYNESLPTDRRQKTADEPTTTA*P*KT 8316
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 7869 to 8183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.5 bits(499) | 0.0 | 96/105(91%) | 0/105(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS 315 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQY+TGQNIVYHDRAITAMFSHIFTQAVERLKYVL ++VLAYHGMST+DFSREV +RLGD+S Subject 7869 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVS 8183
Range 2: 7871 to 8182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 89/104(86%) | 0/104(0%) | Minus/Minus |
Query 3 EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED 314 + SPSLS TSRLKSSVDIPWYAKT CSTYFNLSTACVKMCENIAVIALSWYT+FCPV YCC GVESNFGLAS T+SL*RVIAD+S T +RKRAHNDCLAIED Subject 7871 DTSPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED 8182
Range 3: 7869 to 8177 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 61/103(59%) | 0/103(0%) | Minus/Minus |
Query 1 VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP 309 +PQS++NL+T+V HT+V *D R+QHIFQPLDRL +DV*KHR YS ++VHN+L VLL R +QLR + L H+L+T H QI+ +R Q SPQ LLSHRRP Subject 7869 IPQSITNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP 8177
Range 4: 7870 to 8175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 57/102(56%) | 0/102(0%) | Plus/Plus |
Query 2 GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG 307 GLLWLSS CGL C IC++* V S W Q +RSW SST + LCT L* RCFHTS +RSRG*NMCC R+S* T VC T V RL DWG Subject 7870 GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWTPRLYSSTLQGKTLCTMIEL*LRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLVIDWG 8175
Range 5: 7871 to 8176 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 57/102(56%) | 0/102(0%) | Plus/Plus |
Query 3 VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG 308 VFYG*AV+VGS A+ + V +D+L A+G R EVG + AV R ++CVP YN DVFTHL+ GREVEICAA ESLS+P YV L SRG TGG Subject 7871 VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPRYVNRRLQSRGW**TGG 8176
Range 6: 7870 to 8175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 58/102(57%) | 0/102(0%) | Minus/Minus |
Query 2 PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT 307 PPV P D*S TY G LRLS AAHISTSRP *RCVKTS L* GTQ TA +PTS L P*A N S T+ + +A+EPT TA*P*KT Subject 7870 PPVYHQPRD*SLLLTYRGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT 8175
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6
Range 1: 7869 to 8183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.5 bits(499) | 0.0 | 96/105(91%) | 0/105(0%) | Plus/Plus |
Query 1 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS 315 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQY+TGQNIVYHDRAITAMFSHIFTQAVERLKYVL ++VLAYHGMST+DFSREV +RLGD+S Subject 7869 RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVS 8183
Range 2: 7871 to 8182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 89/104(86%) | 0/104(0%) | Minus/Minus |
Query 3 EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED 314 + SPSLS TSRLKSSVDIPWYAKT CSTYFNLSTACVKMCENIAVIALSWYT+FCPV YCC GVESNFGLAS T+SL*RVIAD+S T +RKRAHNDCLAIED Subject 7871 DTSPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED 8182
Range 3: 7869 to 8177 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 61/103(59%) | 0/103(0%) | Minus/Minus |
Query 1 VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP 309 +PQS++NL+T+V HT+V *D R+QHIFQPLDRL +DV*KHR YS ++VHN+L VLL R +QLR + L H+L+T H QI+ +R Q SPQ LLSHRRP Subject 7869 IPQSITNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP 8177
Range 4: 7870 to 8175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 57/102(56%) | 0/102(0%) | Plus/Plus |
Query 2 GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG 307 GLLWLSS CGL C IC++* V S W Q +RSW SST + LCT L* RCFHTS +RSRG*NMCC R+S* T VC T V RL DWG Subject 7870 GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWTPRLYSSTLQGKTLCTMIEL*LRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLVIDWG 8175
Range 5: 7871 to 8176 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 57/102(56%) | 0/102(0%) | Plus/Plus |
Query 3 VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG 308 VFYG*AV+VGS A+ + V +D+L A+G R EVG + AV R ++CVP YN DVFTHL+ GREVEICAA ESLS+P YV L SRG TGG Subject 7871 VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPRYVNRRLQSRGW**TGG 8176
Range 6: 7870 to 8175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 58/102(57%) | 0/102(0%) | Minus/Minus |
Query 2 PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT 307 PPV P D*S TY G LRLS AAHISTSRP *RCVKTS L* GTQ TA +PTS L P*A N S T+ + +A+EPT TA*P*KT Subject 7870 PPVYHQPRD*SLLLTYRGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT 8175
Nucleotide Sequence (430 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
265.0 | 1139.7 | 30% | 3.819e-69 | 61% | EF103901.1 | |
265.0 | 1172.7 | 30% | 3.819e-69 | 63% | KT000365.1 | |
262.2 | 1173.2 | 30% | 2.568e-68 | 63% | KT000364.1 | |
260.0 | 1170.4 | 30% | 1.257e-67 | 63% | JQ023131.1 | |
260.0 | 1170.4 | 30% | 1.257e-67 | 63% | NC_016509.1 |
Alignments
Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds
Sequence ID: EF103901.1 Length: 5715 Number of Matches: 7
Range 1: 2045 to 2446 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.0 bits(572) | 0.0 | 127/134(95%) | 0/134(0%) | Minus/Plus |
Query 2 VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL 403 V F GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK ELLINDRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL Subject 2045 VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELLINDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL 2446
Range 2: 2026 to 2229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 53/68(78%) | 0/68(0%) | Plus/Minus |
Query 219 QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP 422 QTTT DGSEPFK+IAN VI T VFPNHVFAPPDLRCAPTD+TSSFFPIVTTESYSP K +T ++ +P Subject 2026 QTTTNDGSEPFKEIANKVIRTKVFPNHVFAPPDLRCAPTDRTSSFFPIVTTESYSPQKKASTTDSDTP 2229
Range 3: 2314 to 2445 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 37/44(84%) | 0/44(0%) | Plus/Minus |
Query 3 RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN 134 +SS GSLSRL+FKNNLNGSG+K*Q SGVLTKYFEQK*G HWH N Subject 2314 KSSFGSLSRLSFKNNLNGSGKK*QWSGVLTKYFEQK*GAHWHVN 2445
Range 4: 2083 to 2442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 75/120(62%) | 0/120(0%) | Minus/Plus |
Query 6 YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R 365 ++G+E A VG GAAEIWR +++VREH G+ D VGD+FERFGT++ LWR*LFDFF+ RAA *QDS*REFW R Q+ +PV PL LFE+FGED G LLF + VV E KPGKR +*R Subject 2083 HDGEERACSVGRGAAEIWRRKYVVREHFGSYDFVGDLFERFGTVIGCCLWR*LFDFFEERAAD**QDS*REFWVRPQVNVPVCPLFLFEIFGEDTGPLLFFTGPVQVVFEAKPGKRAE*R 2442
Range 5: 2085 to 2447 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 79/121(65%) | 0/121(0%) | Minus/Plus |
Query 1 QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC 363 +W R S FCR GRSGDLE + G*GT W * CWR L*KVRN FVAMTL*FF+R SC MTGFLKRVL S S+ AS PL FVR+IW*G R VIF + SC *S*AWKE+ MKIC Subject 2085 RWGRTSLFCR*GRSGDLEAQIRG*GTLWFL*LCWRSL*KVRNRHWLLFVAMTL*FFRRTSC*LMTGFLKRVLGSTSS*RASVPLIFVRNIW*GHRTIVIFYRTRSSCF*S*AWKESRMKIC 2447
Range 6: 2067 to 2447 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 78/127(61%) | 0/127(0%) | Plus/Minus |
Query 1 ADLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT 381 A+LH LFPGL S+TT* +NN+ P SSPN SNK+KG TG * R QNSLQESCH* AA KKSKSHRHK + VPNLSK SPT S P CSLT LQISAAP PT++A S P * ++ T Subject 2067 ANLHSALFPGLASKTT*TGPVKNNNGPVSSPNISNKNKGHTGTLT*GRTQNSLQESCH*SAARSSKKSKSHRHKQQPMTVPNLSKRSPTKS*EPKCSLTTYLRLQISAAPLPTEQARSSPS*PRNHT 2447
Range 7: 2066 to 2446 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 80/127(63%) | 0/127(0%) | Plus/Minus |
Query 2 QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL 382 QIFI SFQA*LQ+QL+ + KIT++R PHQI RTK+RG LA E+E KTLFKNPVI++QL L KNQRVIATN++ FRTFQR RQQ H +Q VP*P + SRSPLRP+RQN+L+L H ++ ++L Subject 2066 QIFIRLSFQA*LQKQLERVR*KITMVRCPHQIFRTKIRGTLAR*LEVEPKTLFKNPVINQQLVLRKNQRVIATNNNQ*RFRTFQRDRQQSHKNQSVP*PRICASRSPLRPYRQNKLVLPHRDHGIIL 2446
UNVERIFIED: Grapevine leafroll associated virus 1 isolate 7_2_5 genomic sequence
Sequence ID: KT000365.1 Length: 3046 Number of Matches: 7
Range 1: 2249 to 2650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.0 bits(572) | 0.0 | 127/134(95%) | 0/134(0%) | Minus/Plus |
Query 2 VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL 403 V F GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK ELLINDRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL Subject 2249 VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELLINDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL 2650
Range 2: 2230 to 2433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 55/68(81%) | 0/68(0%) | Plus/Minus |
Query 219 QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP 422 QTTT DGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP K +T ++ +P Subject 2230 QTTTNDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP 2433
Range 3: 2518 to 2649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 38/44(86%) | 0/44(0%) | Plus/Minus |
Query 3 RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN 134 +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N Subject 2518 KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN 2649
Range 4: 2272 to 2646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 79/125(63%) | 0/125(0%) | Minus/Plus |
Query 6 VRLCSYNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R 380 VR ++G+E ARFVG AAEIWR +++VREH G+ D VGDIFERFGT++ LW *LFDFF+ RAA +*QDS*REFW R Q+ +PV PL LFE+FGED GSLLF + VV E K GKR Q*R Subject 2272 VRFRGHDGEERARFVGRSAAEIWRRKYVVREHFGSYDFVGDIFERFGTVIGCCLW**LFDFFEERAADK*QDS*REFWVRPQVNVPVRPLFLFEIFGEDTGSLLFFTGPVQVVFEAKLGKRAQ*R 2646
Range 5: 2289 to 2651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 83/121(69%) | 0/121(0%) | Minus/Plus |
Query 1 QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC 363 +W R SSFCR RSGDLE + G*GT W * CWRYL*KVRN FV MTL*FF+R SC MTGFLKRVL S S+ ASAPL FVR+IW*G RITVIF + SC *S*AWKE+PMKIC Subject 2289 RWGRTSSFCR*ERSGDLEAQIRG*GTLWFL*LCWRYL*KVRNRHWLLFVVMTL*FFRRTSC**MTGFLKRVLGSTSS*RASAPLIFVRNIW*GHRITVIFYRTRSSCF*S*AWKESPMKIC 2651
Range 6: 2271 to 2648 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 80/126(63%) | 0/126(0%) | Plus/Minus |
Query 4 DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT 381 +LHW LFP L S+TT* +NNSDP SSPN SNK+KG TG * R QNSLQESCH AA KKSKSH HK + VPNLSKISPT S P CSLT LQISAA PTKRA S P * ++RT Subject 2271 NLHWALFPSLASKTT*TGPVKNNSDPVSSPNISNKNKGRTGTLT*GRTQNSLQESCHLSAARSSKKSKSHHHKQQPMTVPNLSKISPTKS*EPKCSLTTYLRLQISAALLPTKRARSSPS*PRNRT 2648
Range 7: 2270 to 2650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 85/127(67%) | 0/127(0%) | Plus/Minus |
Query 2 QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL 382 QIFIG SFQA*LQ+QL+ + KITVIR PHQI RTK+RGALA E+E KTLFKNPVI +QL L KNQRVI TN++ FRTFQRYRQQ H +Q VP*P + SRSPLR +RQNEL+L H ++ +VL Subject 2270 QIFIGLSFQA*LQKQLERVR*KITVIRCPHQIFRTKIRGALAR*LEVEPKTLFKNPVIYQQLVLRKNQRVITTNNNQ*RFRTFQRYRQQSHKNQSVP*PRICASRSPLRSYRQNELVLPHRDHGIVL 2650
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 7
Range 1: 4510 to 4911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.2 bits(566) | 0.0 | 126/134(94%) | 0/134(0%) | Minus/Plus |
Query 2 VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL 403 V F GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLK SEPSLVVVCGDDSLIFSK ELLINDRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL Subject 4510 VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKSSEPSLVVVCGDDSLIFSKNELLINDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL 4911
Range 2: 4491 to 4694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 55/68(81%) | 0/68(0%) | Plus/Minus |
Query 219 QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP 422 QTTT DGSE FKDIANNVI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP K +T ++ +P Subject 4491 QTTTNDGSELFKDIANNVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP 4694
Range 3: 4779 to 4910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 38/44(86%) | 0/44(0%) | Plus/Minus |
Query 3 RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN 134 +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N Subject 4779 KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN 4910
Range 4: 4548 to 4907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.2 bits(387) | 0.0 | 78/120(65%) | 0/120(0%) | Minus/Plus |
Query 6 YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R 365 ++G+E ARFV GAAEIWR E++VREH G+ D+VGDIFE+FGT++ LWR*LFDFF+ RAA +*QDS*REFW R Q+ +PV PL LFE+FGED GSLLF + VV E K GKR Q*R Subject 4548 HDGEERARFVSRGAAEIWRREYVVREHFGSYDIVGDIFEKFGTVIGCCLWR*LFDFFEERAADK*QDS*REFWVRPQVNVPVCPLFLFEIFGEDTGSLLFFTGPVQVVFEAKLGKRAQ*R 4907
Range 5: 4550 to 4912 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 83/121(69%) | 0/121(0%) | Minus/Plus |
Query 1 QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC 363 +W R SSFC+ GRSGDLE R G*GT W * CWRYL*KVRN FVAMTL*FF+R SC MTGFLKRVL S S+ AS PL FVR+IW*G RI VIF + SC *S*AWKE+PMKIC Subject 4550 RWGRTSSFCQ*GRSGDLEARIRG*GTLWFL*HCWRYL*KVRNRHWLLFVAMTL*FFRRTSC**MTGFLKRVLGSTSS*RASVPLIFVRNIW*GHRIIVIFYRTRSSCF*S*AWKESPMKIC 4912
Range 6: 4532 to 4909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 79/126(63%) | 0/126(0%) | Plus/Minus |
Query 4 DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT 381 +LHW LFP L S+TT* +NN+DP SSPN SNK+KG TG * R QNSLQESCH AA KKSKSHRHK + VPN SKISPT S P CSLT S LQISAAP TKRA S P * ++ T Subject 4532 NLHWALFPSLASKTT*TGPVKNNNDPVSSPNISNKNKGHTGTLT*GRTQNSLQESCHLSAARSSKKSKSHRHKQQPMTVPNFSKISPTMS*EPKCSLTTYSRLQISAAPLLTKRARSSPS*PRNHT 4909
Range 7: 4531 to 4911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 84/127(66%) | 0/127(0%) | Plus/Minus |
Query 2 QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL 382 QIFIG SFQA*LQ+QL+ + KIT+IR PHQI RTK+RG LA E+E KTLFKNPVI +QL L KNQRVIATN++ FRTFQRYRQQ H +Q VP*P +R SRSPLRP+ QNEL+L H ++ ++L Subject 4531 QIFIGLSFQA*LQKQLERVR*KITMIRCPHQIFRTKIRGTLAR*LEVEPKTLFKNPVIYQQLVLRKNQRVIATNNNQ*RFRTFQRYRQQCHKNQSVP*PRIRASRSPLRPY*QNELVLPHRDHGIIL 4911
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7
Range 1: 8295 to 8696 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 125/134(93%) | 0/134(0%) | Minus/Plus |
Query 2 VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL 403 V F GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK EL I+DRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL Subject 8295 VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL 8696
Range 2: 8276 to 8479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 56/68(82%) | 0/68(0%) | Plus/Minus |
Query 219 QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP 422 QTTTKDGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP K +T ++ +P Subject 8276 QTTTKDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP 8479
Range 3: 8564 to 8695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 38/44(86%) | 0/44(0%) | Plus/Minus |
Query 3 RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN 134 +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N Subject 8564 KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN 8695
Range 4: 8333 to 8692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 79/120(66%) | 0/120(0%) | Minus/Plus |
Query 6 YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R 365 ++G+E ARFVG GAAEIWRC+++VREH G+ D VGDIFERFGT+ LWR*LFDFF+ RAA +* DS*REFW R Q+ +PV L LFE+FGED GSLLF +*VV E K GKR Q*R Subject 8333 HDGEERARFVGRGAAEIWRCKYVVREHFGSYDFVGDIFERFGTVFGCCLWR*LFDFFEERAADR**DS*REFWVRPQVNVPVCSLFLFEIFGEDTGSLLFFT*PV*VVFEAKLGKRAQ*R 8692
Range 5: 8335 to 8697 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 83/121(69%) | 0/121(0%) | Minus/Plus |
Query 1 QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC 363 +W R SSFCR GRSGDLEV+ G*GT W * CWRYL*KVRN FVAMTL*FF+R SC M GFLKRVL S S+ AS L FVR+IW*G RI VIF LSC *S*AWKE+PMKIC Subject 8335 RWGRTSSFCR*GRSGDLEVQIRG*GTLWFL*LCWRYL*KVRNRLWLLFVAMTL*FFRRTSCR*MIGFLKRVLGSTSS*RASVLLIFVRNIW*GHRIIVIFYLTRLSCF*S*AWKESPMKIC 8697
Range 6: 8317 to 8694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 79/126(63%) | 0/126(0%) | Plus/Minus |
Query 4 DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT 381 +LHW LFP L S+TT* +NN+DP SSPN SNK+K TG * R QNSLQES H AA KKSKSHRHK + + VPNLSKISPT S P CSLT HLQISAAP PTKRA S P * ++ T Subject 8317 NLHWALFPSLASKTT*TGQVKNNNDPVSSPNISNKNKEHTGTLT*GRTQNSLQESYHLSAARSSKKSKSHRHKQQPKTVPNLSKISPTKS*EPKCSLTTYLHLQISAAPLPTKRARSSPS*PRNHT 8694
Range 7: 8316 to 8696 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 84/127(66%) | 0/127(0%) | Plus/Minus |
Query 2 QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL 382 QIFIG SFQA*LQ+QLK + KIT+IR PHQI RTK+R LA E+E KTLFKNP+I QL L KNQRVIATN++ FRTFQRYRQQ H +Q VP*P + TSRSPLRP+RQNEL+L H ++ ++L Subject 8316 QIFIGLSFQA*LQKQLKRVR*KITMIRCPHQIFRTKIRSTLAR*LEVEPKTLFKNPIIYLQLVLRKNQRVIATNNNQRRFRTFQRYRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIIL 8696
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7
Range 1: 8295 to 8696 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 125/134(93%) | 0/134(0%) | Minus/Plus |
Query 2 VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL 403 V F GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK EL I+DRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL Subject 8295 VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL 8696
Range 2: 8276 to 8479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 56/68(82%) | 0/68(0%) | Plus/Minus |
Query 219 QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP 422 QTTTKDGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP K +T ++ +P Subject 8276 QTTTKDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP 8479
Range 3: 8564 to 8695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 38/44(86%) | 0/44(0%) | Plus/Minus |
Query 3 RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN 134 +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N Subject 8564 KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN 8695
Range 4: 8333 to 8692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 79/120(66%) | 0/120(0%) | Minus/Plus |
Query 6 YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R 365 ++G+E ARFVG GAAEIWRC+++VREH G+ D VGDIFERFGT+ LWR*LFDFF+ RAA +* DS*REFW R Q+ +PV L LFE+FGED GSLLF +*VV E K GKR Q*R Subject 8333 HDGEERARFVGRGAAEIWRCKYVVREHFGSYDFVGDIFERFGTVFGCCLWR*LFDFFEERAADR**DS*REFWVRPQVNVPVCSLFLFEIFGEDTGSLLFFT*PV*VVFEAKLGKRAQ*R 8692
Range 5: 8335 to 8697 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 83/121(69%) | 0/121(0%) | Minus/Plus |
Query 1 QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC 363 +W R SSFCR GRSGDLEV+ G*GT W * CWRYL*KVRN FVAMTL*FF+R SC M GFLKRVL S S+ AS L FVR+IW*G RI VIF LSC *S*AWKE+PMKIC Subject 8335 RWGRTSSFCR*GRSGDLEVQIRG*GTLWFL*LCWRYL*KVRNRLWLLFVAMTL*FFRRTSCR*MIGFLKRVLGSTSS*RASVLLIFVRNIW*GHRIIVIFYLTRLSCF*S*AWKESPMKIC 8697
Range 6: 8317 to 8694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 79/126(63%) | 0/126(0%) | Plus/Minus |
Query 4 DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT 381 +LHW LFP L S+TT* +NN+DP SSPN SNK+K TG * R QNSLQES H AA KKSKSHRHK + + VPNLSKISPT S P CSLT HLQISAAP PTKRA S P * ++ T Subject 8317 NLHWALFPSLASKTT*TGQVKNNNDPVSSPNISNKNKEHTGTLT*GRTQNSLQESYHLSAARSSKKSKSHRHKQQPKTVPNLSKISPTKS*EPKCSLTTYLHLQISAAPLPTKRARSSPS*PRNHT 8694
Range 7: 8316 to 8696 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 84/127(66%) | 0/127(0%) | Plus/Minus |
Query 2 QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL 382 QIFIG SFQA*LQ+QLK + KIT+IR PHQI RTK+R LA E+E KTLFKNP+I QL L KNQRVIATN++ FRTFQRYRQQ H +Q VP*P + TSRSPLRP+RQNEL+L H ++ ++L Subject 8316 QIFIGLSFQA*LQKQLKRVR*KITMIRCPHQIFRTKIRSTLAR*LEVEPKTLFKNPIIYLQLVLRKNQRVIATNNNQRRFRTFQRYRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIIL 8696
Nucleotide Sequence (489 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
376.8 | 1729.7 | 29% | 1.035e-102 | 72% | JQ023131.1 | |
376.8 | 1729.7 | 29% | 1.035e-102 | 72% | NC_016509.1 | |
376.8 | 1792.0 | 29% | 1.035e-102 | 75% | KU674796.1 | |
375.0 | 1730.2 | 29% | 3.687e-102 | 72% | KU674797.1 | |
367.6 | 1710.5 | 31% | 5.937e-100 | 72% | KT000364.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 5897 to 6382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
376.8 bits(816) | 0.0 | 157/162(97%) | 0/162(0%) | Plus/Plus |
Query 2 VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH Subject 5897 VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH 6382
Range 2: 5896 to 6375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.0 bits(740) | 0.0 | 147/160(92%) | 0/160(0%) | Minus/Minus |
Query 1 TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT 480 TSRSSQTSTASCL++TA +F PGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTR PGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIV FD LCRT Subject 5896 TSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRT 6375
Range 3: 5897 to 6382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 117/162(72%) | 0/162(0%) | Minus/Minus |
Query 2 MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN 487 M++**II +*H +L R+Y L I PWH+S CG+QKD+ +++DS PVFR I EIRV+H+* +ILVNC+RKLVSYS VRFSN+ISR LQLDEQIETSPC*IH++LN RG STRGLQIFAVYDIIEGLYPQDWV T +PTVL++TPHLHSCADS L* ALPN Subject 5897 MKH**IITN*HGILPRQYCLEISPWHESACGYQKDVFQIEDSRPVFRRICNHFEIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPN 6382
Range 4: 5898 to 6383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 116/162(72%) | 0/162(0%) | Plus/Plus |
Query 3 FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM 488 FGKA Q LLSAQLWRWGV RTVG V+TQSWGYNPSMMSYTAKI*RPRVL+PR+LS CI*HGDVSICSSS*S REI LLKRT+E*DTSFR QFTRI Y C TRIS+ +M RKTG+LS + SFW PQ L CQG I + Y R K C* MIY* M Subject 5898 FGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTTRISKWLQMRRKTGRLSSIWNTSFWYPQALSCQGEISRQYCRGKMPC*FVMIY*CFM 6383
Range 5: 5898 to 6383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.4 bits(538) | 0.0 | 116/162(72%) | 0/162(0%) | Minus/Minus |
Query 3 HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE 488 H LVDH +LA L S + + +LA+K LW PKR +R* SRLP H P *NSR T V DSRKL+AETCVLL CPF*Q+DLA ASA**TNRNIAVLNT**TQ PG QYPR SDLCSIRHH*RIVSPRLG H PNCP +YTPSPQLCR**+LTRFAE Subject 5898 HETLVDHHKLARHLASTILPRDFALARKCLWIPKRRIPNRR*SSRLPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQDLALASA**TNRNIAVLNT**TQSPGLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAE 6383
Range 6: 5899 to 6312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 105/138(76%) | 0/138(0%) | Plus/Plus |
Query 4 SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAR 417 SAKRVK YYRHSCGDGVY GQLG+ * PSLGDTILQ*CRILQRSE RGY* PG+*V++VFSTAMFRFVHQAEA ARS C*NGQ+SRTQVSA SLRES T V REFQ G +C GRRD+YL + LFG+HR+F AR Subject 5899 SAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKCAGRRDDYLRFGIRLFGIHRHFRAR 6312
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6
Range 1: 5897 to 6382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
376.8 bits(816) | 0.0 | 157/162(97%) | 0/162(0%) | Plus/Plus |
Query 2 VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH Subject 5897 VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH 6382
Range 2: 5896 to 6375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.0 bits(740) | 0.0 | 147/160(92%) | 0/160(0%) | Minus/Minus |
Query 1 TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT 480 TSRSSQTSTASCL++TA +F PGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTR PGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIV FD LCRT Subject 5896 TSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRT 6375
Range 3: 5897 to 6382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 117/162(72%) | 0/162(0%) | Minus/Minus |
Query 2 MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN 487 M++**II +*H +L R+Y L I PWH+S CG+QKD+ +++DS PVFR I EIRV+H+* +ILVNC+RKLVSYS VRFSN+ISR LQLDEQIETSPC*IH++LN RG STRGLQIFAVYDIIEGLYPQDWV T +PTVL++TPHLHSCADS L* ALPN Subject 5897 MKH**IITN*HGILPRQYCLEISPWHESACGYQKDVFQIEDSRPVFRRICNHFEIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPN 6382
Range 4: 5898 to 6383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 116/162(72%) | 0/162(0%) | Plus/Plus |
Query 3 FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM 488 FGKA Q LLSAQLWRWGV RTVG V+TQSWGYNPSMMSYTAKI*RPRVL+PR+LS CI*HGDVSICSSS*S REI LLKRT+E*DTSFR QFTRI Y C TRIS+ +M RKTG+LS + SFW PQ L CQG I + Y R K C* MIY* M Subject 5898 FGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTTRISKWLQMRRKTGRLSSIWNTSFWYPQALSCQGEISRQYCRGKMPC*FVMIY*CFM 6383
Range 5: 5898 to 6383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.4 bits(538) | 0.0 | 116/162(72%) | 0/162(0%) | Minus/Minus |
Query 3 HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE 488 H LVDH +LA L S + + +LA+K LW PKR +R* SRLP H P *NSR T V DSRKL+AETCVLL CPF*Q+DLA ASA**TNRNIAVLNT**TQ PG QYPR SDLCSIRHH*RIVSPRLG H PNCP +YTPSPQLCR**+LTRFAE Subject 5898 HETLVDHHKLARHLASTILPRDFALARKCLWIPKRRIPNRR*SSRLPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQDLALASA**TNRNIAVLNT**TQSPGLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAE 6383
Range 6: 5899 to 6312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 105/138(76%) | 0/138(0%) | Plus/Plus |
Query 4 SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAR 417 SAKRVK YYRHSCGDGVY GQLG+ * PSLGDTILQ*CRILQRSE RGY* PG+*V++VFSTAMFRFVHQAEA ARS C*NGQ+SRTQVSA SLRES T V REFQ G +C GRRD+YL + LFG+HR+F AR Subject 5899 SAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKCAGRRDDYLRFGIRLFGIHRHFRAR 6312
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6
Range 1: 5973 to 6458 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
376.8 bits(816) | 0.0 | 157/162(97%) | 0/162(0%) | Plus/Plus |
Query 2 VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH Subject 5973 VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH 6458
Range 2: 5972 to 6451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.9 bits(753) | 0.0 | 149/160(93%) | 0/160(0%) | Minus/Minus |
Query 1 TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT 480 TSRSSQTSTASCL++TA +FLPGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYM+NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVP+V FD LCRT Subject 5972 TSRSSQTSTASCLDNTASRFLPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDALCRT 6451
Range 3: 5973 to 6458 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.9 bits(633) | 0.0 | 123/162(76%) | 0/162(0%) | Minus/Minus |
Query 2 MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN 487 M++**II +*H +L R++ L I PWH+STC +QKD+L+++DS PVFRCI EIRV+H+* +ILVNC+RKLVSYSLVRFSNEISR LQLDEQIETSPC*IHD+LNCRG STRGLQIFAVYDIIEGLYPQDWVL+ +PTVLINTPHLHSCAD L* ALPN Subject 5973 MKH**IITN*HRILPRQHCLEISPWHESTCRYQKDVLQIEDSRPVFRCICNHFEIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRTLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPN 6458
Range 4: 5974 to 6459 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 123/162(76%) | 0/162(0%) | Minus/Minus |
Query 3 HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE 488 H LVDH +LA L S + SLA+KYL PKR T +R* SRLPVH P *NSR T V DSRKL+AETCVLLSCPF*QRDLA ASA**TNRNIAVLNT**TQLPG QYPR SDLCSIRHH*RIVSPRLGP PNCPYQYTPSPQLCR *+LTRFAE Subject 5974 HETLVDHHKLAPHLASTTLPRDFSLARKYL*IPKRRTPNRR*SSRLPVHLQPL*NSRRTLVIQEDSRKLRAETCVLLSCPF*QRDLAHASA**TNRNIAVLNT**TQLPGLQYPRSSDLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRFAE 6459
Range 5: 5974 to 6459 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 122/162(75%) | 0/162(0%) | Plus/Plus |
Query 3 FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM 488 FGKA Q L SAQLWRWGVLIRTVG RTQSWGYNPSMMSYTAKI*RPRVL+PRQLS SCI*HGDVSICSSS*S REISLLKRTRE*DTSFR QFTRI Y C TRIS+ +MHRKTG+LS S SFW QVL CQG I + R K +C* MIY* M Subject 5974 FGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SVREISLLKRTRE*DTSFRSQFTRIFLDYECTTRISKWLQMHRKTGRLSSIWSTSFWYLQVLSCQGEISRQCCRGKMRC*FVMIY*CFM 6459
Range 6: 5975 to 6394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
252.6 bits(545) | 0.0 | 113/140(81%) | 0/140(0%) | Plus/Plus |
Query 4 SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAREE 423 SAKRVK Y+RHSCGDGVY**GQLG+ GPSLGDTILQ*CRILQRSE RGY* PGN*V+HVFSTAMFRFVHQAEA ARSRC*NGQESRTQVSA SLRES +T V REFQ G +CTGRRD+YL V LFG++RYF ARE+ Subject 5975 SAKRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEACARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKCTGRRDDYLRFGVRLFGIYRYFRAREK 6394
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6
Range 1: 6038 to 6523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
375.0 bits(812) | 0.0 | 156/162(96%) | 0/162(0%) | Plus/Plus |
Query 2 VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 VRQ SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH Subject 6038 VRQGASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH 6523
Range 2: 6037 to 6516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 145/160(91%) | 0/160(0%) | Minus/Minus |
Query 1 TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT 480 T+RSSQTSTASCL++TA +FLPGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA F+SLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVP+V FD CRT Subject 6037 TNRSSQTSTASCLDNTASRFLPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFKSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDAPCRT 6516
Range 3: 6038 to 6523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.5 bits(597) | 0.0 | 119/162(73%) | 0/162(0%) | Minus/Minus |
Query 2 MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN 487 M++**II +*H +L R++ L I PWH+STC +QKD+L+++DS PVF I EIRV+H+* +ILVNC+RKLVSYSLVRFSNEISR LQLDEQIETSP *IH++LNCRG STRGLQIFAVYDIIEGLYPQDWVL+ +PTVLINTPHLHSCAD L* ALPN Subject 6038 MKH**IITN*HGILPRQHCLEISPWHESTCRYQKDVLQIEDSRPVFWRICNHFEIRVVHS*SGKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPR*IHNELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPN 6523
Range 4: 6039 to 6524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.5 bits(536) | 0.0 | 118/162(73%) | 0/162(0%) | Plus/Plus |
Query 3 FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM 488 FGKA Q L SAQLWRWGVLIRTVG RTQSWGYNPSMMSYTAKI*RPRVL+PRQLS CI* GDVSICSSS*S REISLLKRTRE*DTSFR QFTRI Y C TRIS+ +M +KTG+LS S SFW QVL CQG I + R K C* MIY* M Subject 6039 FGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSLCI*RGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFPDYECTTRISKWLQMRQKTGRLSSIWSTSFWYLQVLSCQGEISRQCCRGKMPC*FVMIY*CFM 6524
Range 5: 6039 to 6524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.6 bits(534) | 0.0 | 117/162(72%) | 0/162(0%) | Minus/Minus |
Query 3 HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE 488 H L+DH +LA L S + SLA+KYL PKR T +R* SRL H P *NSR T V DSRKL+AETCVLLSCPF*QRDLA ASA**TNRNIA LNT**TQLPG QYPR S+LCSIRHH*RIVSPRLGP PNCPYQYTPSPQLCR *+LTR AE Subject 6039 HETLIDHHKLARHLASTTLPRDFSLARKYL*IPKRRTPNRR*SSRLLAHLQPL*NSRRTLVIREDSRKLRAETCVLLSCPF*QRDLALASA**TNRNIAALNT**TQLPGLQYPRSSNLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRLAE 6524
Range 6: 6040 to 6459 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
242.5 bits(523) | 0.0 | 108/140(77%) | 0/140(0%) | Plus/Plus |
Query 4 SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAREE 423 SA+RVK Y+RHSCGDGVY**GQLG+ GPSLGDTILQ*CRILQR E RGY* PGN*V++VFS AMFRFVHQAEA ARSRC*NGQESRTQVSA SLRES R+T V REFQ G +C RRD+YL V LFG++RYF ARE+ Subject 6040 SARRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRFEDRGY*SPGN*VHYVFSAAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSRITSVRREFQSGCKCARRRDDYLRFGVRLFGIYRYFRAREK 6459
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6
Range 1: 2112 to 2597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.6 bits(796) | 0.0 | 153/162(94%) | 0/162(0%) | Plus/Plus |
Query 2 VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH 487 VRQ +K+TIGTAVEMGC KDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH Subject 2112 VRQXATKSTIGTAVEMGCXXKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH 2597
Range 2: 2111 to 2590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.0 bits(727) | 0.0 | 145/160(91%) | 0/160(0%) | Minus/Minus |
Query 1 TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT 480 TSRSSQTSTASCL++TA +FLPGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYM+NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLS HPISTAVPIV F CRT Subject 2111 TSRSSQTSTASCLDNTASRFLPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSXXXHPISTAVPIVDFVAXCRT 2590
Range 3: 2112 to 2597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(589) | 0.0 | 117/162(72%) | 0/162(0%) | Minus/Minus |
Query 2 MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN 487 M++**II +*H +L R++ I PWH+S C +QKD+L+++DS PVFR I EIRV+H+* +ILVNC+RKLVSYSLVRFSNEISR LQLDEQIETSPC*IHD+LNCRG STRGLQIFAVY IIEGLYPQDWVLT +PTVL TPHLHSCADS L ALP+ Subject 2112 MKH**IITN*HGILPRQHCFEISPWHESACRYQKDVLQIEDSRPVFRRICNHFEIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYYIIEGLYPQDWVLT*YPTVLXXTPHLHSCADSRLCRALPD 2597
Range 4: 2116 to 2598 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 118/161(73%) | 0/161(0%) | Minus/Minus |
Query 6 HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFA 488 H LVDH +LA L S L + SLA+K L PKR T +R* SRLP H P *NSR T V DSRKL+AETCVLLSCPF*QRDLA ASA**TNRNIAVLNT**TQLPG QYPR SDLCSI HH*RIVSPRLGPH PNCP YTPSPQLCR**+L+R A Subject 2116 HETLVDHHKLARHLASTTLLRDFSLARKCL*IPKRRTPNRR*SSRLPAHLQPL*NSRRTLVIQEDSRKLRAETCVLLSCPF*QRDLALASA**TNRNIAVLNT**TQLPGLQYPRSSDLCSILHH*RIVSPRLGPHLIPNCPXXYTPSPQLCR**TLSRXA 2598
Range 5: 2116 to 2598 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.0 bits(535) | 0.0 | 118/161(73%) | 0/161(0%) | Plus/Plus |
Query 6 GKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM 488 G A Q LLSAQLWRWGV RTVG VRTQSWGYNPSMM YTAKI*RPRVL+PRQLS SCI*HGDVSICSSS*S REISLLKRTRE*DTSFR QFTRI Y C TRIS+ +M RKTG+LS S SFW Q L CQG I K R K C* MIY* M Subject 2116 GXARQSLLSAQLWRWGVXXRTVGY*VRTQSWGYNPSMM*YTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFLDYECTTRISKWLQMRRKTGRLSSIWSTSFWYLQALSCQGEISKQCCRGKMPC*FVMIY*CFM 2598
Range 6: 2117 to 2554 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.0 bits(511) | 0.0 | 108/146(74%) | 0/146(0%) | Plus/Plus |
Query 7 AKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAREEFTSRTFE 444 A R K YYRHSCGDGV GQLG+ *GPSLGDTILQ*C ILQRSE RGY* PGN*V+HVFSTAMFRFVHQAEA ARSRC*NGQESRTQVSA SLRES +T V REFQ G +C GRRD+YL V LFG++R+F ARE+ S E Subject 2117 AXRDKVYYRHSCGDGVXXXGQLGIR*GPSLGDTILQ*CSILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKCAGRRDDYLRFGVRLFGIYRHFRAREKSRSSVVE 2554
Nucleotide Sequence (781 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
452.9 | 1829.2 | 34% | 2.444e-125 | 47% | KU674796.1 | |
451.9 | 1774.2 | 35% | 4.612e-125 | 46% | JQ023131.1 | |
451.9 | 1774.2 | 35% | 4.612e-125 | 46% | NC_016509.1 | |
451.0 | 1796.3 | 34% | 8.748e-125 | 44% | KU674797.1 | |
426.7 | 1710.2 | 34% | 1.788e-117 | 46% | KT000364.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 9
Range 1: 5568 to 6317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
452.9 bits(982) | 0.0 | 204/250(82%) | 0/250(0%) | Minus/Plus |
Query 31 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA 780 G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG++ EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R +++V RS V SDGK S+ K L PVPSSGV SSSGES AT QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA Subject 5568 GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYHKREATEGKRIKDEVTPRSRVSVSDGKTSKEAKGLLGPVPSSGVSSSSGESEATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA 6317
Range 2: 5567 to 6316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
415.7 bits(901) | 0.0 | 188/250(75%) | 0/250(0%) | Plus/Minus |
Query 32 AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP 781 AFAT LKFASYTRNPGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKYMMNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA P+V F+ L +VA+LSPEEE TP LGTG R L++ D FPSL T DR TS +R+PSVASR *STVALR V+LTLPSS+DST CL SRCIP LIT TSPS +CS PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P Subject 5567 AFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDALCRTVASLSPEEELTPELGTGPSRPLASFDVFPSLTDTRDRGVTSSLMRLPSVASRL**STVALRKVILTLPSSRDSTECLKSRCIPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP 6316
Range 3: 5568 to 6317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.0 bits(583) | 0.0 | 134/250(54%) | 0/250(0%) | Plus/Minus |
Query 31 CIRYRLEIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP 780 CI EIRV+H+* +ILV +RK V LVRFSN+I+ QLDE +E P *+HDELNC G STR LQI AVYDIIE D VLS* PT LI+TP LHS + L AL GS TF R + HRS TF L LP+T Y GS + VF A SS AL+++HS IA H P I R HR+L I LHPRAH+K +T+ ++ML NLS LIR HSK S TIQI+ + Y R V LIISM P Subject 5568 CICNHFEIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRTLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPNGSLTFA*RRTNPRTWHRSQ*TFSFLRRLPVTHRYAGSRSNFVFDALAFSSFALVIVHSGIA*SNTHPPFI*RFHRMLEITLHPRAHYKHITIAQKMLDNLSRLIRPHSKASLTIQIYCDYAYTRCVTFLIISMKP 6317
Range 4: 5567 to 6319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.9 bits(563) | 0.0 | 130/251(52%) | 0/251(0%) | Minus/Plus |
Query 29 RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSECT 781 R SC***EML +W K + + EWSGS+*SA+E*D + RA + R * +C+E GDAA A GG+ * E E+ QC+CGL +AR Y* A+++R +SI +* E V G *+S TCA+ W F K YR KR +VY+ SCGDGV *G+LG+RRGP L ++ Q*C ILQ SE GY* P N*VHHV S A+ R +HQ E + S C*NGQE R Q+S +RES +T V REFQ G +CT Subject 5567 RVSC***EMLHIWCKRSHSKFEWSGSL*SAVE*DGRGCRASSGRW*CVCNEPGDAA*FQAFGGISR*REGEYYFTQCHCGLSQARSY*RQAHQRRSYSSIPRIGE*REDVEGS*RSTGTCAKFWG*FFFRRK*GYRSAKRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEACARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKCT 6319
Range 5: 5650 to 6291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 115/214(54%) | 0/214(0%) | Minus/Plus |
Query 57 ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT 698 EC RIR+ERL SI V L**ARGCS I S RW+L M G * AM LW SA LL A KT +DP Y+ V GR +R +KV DLC+ + L + KV LP KA +S+ LWR GV IR VG *ERT S + SMMSYTA+I*R RVL+P+QLSSSC * G S SSS* I LLKRTR T+FR +TRI Y C T Subject 5650 ECGRIRRERLSSIFWAMVMCL**ARGCSVISSIRWNL*MKGG*VLLYAMPLWTITSAKLLKASASKTKLLLDPAYR*VTGRRRRKLKVYWDLCQVLGLVLLQAKVRLPFGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SVREISLLKRTRE*DTSFRSQFTRIFLDYECTT 6291
Range 6: 5569 to 5610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 10/14(71%) | 0/14(0%) | Minus/Plus |
Query 738 GFMLMMRDATRLA* 779 GFMLMMR+ T L * Subject 5569 GFMLMMRNVTHLV* 5610
Range 7: 5743 to 6141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 63/133(47%) | 0/133(0%) | Plus/Minus |
Query 207 QLLGPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA 605 QL G QYP+ SD CSI HH*+ R GPLL PN PY +TPSPQL + T RF R* HF +K+ AQV D P T S H + I+ R AC Q* RA +PQ HC S S H + PP A Subject 5743 QLPGLQYPRSSDLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRFAER*PHFRLKKN*PQNLAQVPVDL*LPSTSSRHSPIRGIEE*LRL*CACLQ*LRACDSPQWHCVK*YSPSLHLEIPPNA 6141
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 9
Range 1: 5492 to 6241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
451.9 bits(980) | 0.0 | 204/250(82%) | 0/250(0%) | Minus/Plus |
Query 31 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA 780 G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG+I EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R + +V +S V +DGK S+ K L PVPSSGV SSSGESVAT QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA Subject 5492 GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYCKREATEGKRVKGEVTPQSRVSVNDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA 6241
Range 2: 5491 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
414.4 bits(898) | 0.0 | 189/250(76%) | 0/250(0%) | Plus/Minus |
Query 32 AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP 781 AFAT LKFASYTR PGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA PIV F+ L +VATLSPEEE TP LGTG R L++ D FPS T D TS R+PSVASR *STVALR+V+LTLPSSKDST CL SRCIP LITKTSPS +CS I PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P Subject 5491 AFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRTVATLSPEEELTPELGTGPSRPLASFDVFPSFTDTRD*GVTSPLTRLPSVASRLQ*STVALRNVILTLPSSKDSTECLKSRCIPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP 6240
Range 3: 5492 to 6223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 127/244(52%) | 0/244(0%) | Plus/Minus |
Query 49 EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP 780 EIRV+H+* +ILV +RK V VRFSN+I+ QLDE +E P *+H+ELN G STR LQI AVYDIIE D V +* PT L+ TP LHS +S L AL G +TF R + HRS TF L LP+ Y G + F A SS AL +IHS +A C H P IQR HR+L I LHPRAHH+D+T+ ++ML NLS LIR HSK S TIQI+ +N + R VA LIISM P Subject 5492 EIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPNGRHTFA*RRTNP*TWHRSQ*TFSFLRRLPVIHRYPGLRSNFAFNALAFSSFALAIIHSGVA*CNTHPPFIQRFHRMLKITLHPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKP 6223
Range 4: 5491 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.5 bits(512) | 0.0 | 126/250(50%) | 0/250(0%) | Minus/Plus |
Query 32 RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC 781 R SC***EML +W + C+ + EWSGS+*SA+E*D +D RA + * L DE GDAA *A GG+FG* E E+ Q +CGL +AR Y* A +R +SI +* E V G *+S TCA+ F KC R KR +VYY SCGDGV G+LG+R P L ++ Q*C ILQ SE GY* P +*VH+V S A+ R +HQ E + S C*NGQ+ R Q+S +RES T V REFQ G +C Subject 5491 RVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGDAA*F*AFGGIFG*REGEYYITQRHCGLLQARSY*RQAR*RRSYSSIPGIGE*REDVEGS*RSTGTCAKFRG*FFFRRKCGDRSAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKC 6240
Range 5: 5574 to 6215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 108/214(50%) | 0/214(0%) | Minus/Plus |
Query 57 ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT 698 EC RIR+ERL SI V S **ARGCS I+S RW+LWM G * H A LWI SA LL A K ++P Y+ + GR +R +KV DLC+ L + KV P KA +S+L LWR GV R VG * +T S + SMMSYTA+I*R RVL+P++LSS C * G S SSS* I LLKRT+ T+FR +TRI Y C T Subject 5574 ECGRIRRERLSSIFWVMVMSS**ARGCSVILSIRWNLWMKGG*VLHYATPLWIIASAKLLKASALKAKLLLNPGYR*MTGRRRRKLKVYWDLCQVQGLVLLQAKVWRPFGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTT 6215
Range 6: 5493 to 5534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Plus |
Query 738 GFMLMMRDATRLA* 779 GFMLMMR+AT L * Subject 5493 GFMLMMRNATHLV* 5534
Range 7: 5667 to 6056 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 60/130(46%) | 0/130(0%) | Plus/Minus |
Query 216 GPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA 605 G QYP+ SD CSI HH*+ R G L PN P +TPSPQL +* T RF R HF +K+ AQV D P T S H + I+ R AC Q* RA NPQ C + S S HPK PP A Subject 5667 GLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAERSPHFRLKKN*PLNLAQVPVDL*LPSTSSRHSPIPGIEE*LRL*RACLQ*LRACNNPQWRCVM*YSPSLHPKIPPNA 6056
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 9
Range 1: 5492 to 6241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
451.9 bits(980) | 0.0 | 204/250(82%) | 0/250(0%) | Minus/Plus |
Query 31 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA 780 G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG+I EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R + +V +S V +DGK S+ K L PVPSSGV SSSGESVAT QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA Subject 5492 GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYCKREATEGKRVKGEVTPQSRVSVNDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA 6241
Range 2: 5491 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
414.4 bits(898) | 0.0 | 189/250(76%) | 0/250(0%) | Plus/Minus |
Query 32 AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP 781 AFAT LKFASYTR PGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA PIV F+ L +VATLSPEEE TP LGTG R L++ D FPS T D TS R+PSVASR *STVALR+V+LTLPSSKDST CL SRCIP LITKTSPS +CS I PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P Subject 5491 AFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRTVATLSPEEELTPELGTGPSRPLASFDVFPSFTDTRD*GVTSPLTRLPSVASRLQ*STVALRNVILTLPSSKDSTECLKSRCIPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP 6240
Range 3: 5492 to 6223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 127/244(52%) | 0/244(0%) | Plus/Minus |
Query 49 EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP 780 EIRV+H+* +ILV +RK V VRFSN+I+ QLDE +E P *+H+ELN G STR LQI AVYDIIE D V +* PT L+ TP LHS +S L AL G +TF R + HRS TF L LP+ Y G + F A SS AL +IHS +A C H P IQR HR+L I LHPRAHH+D+T+ ++ML NLS LIR HSK S TIQI+ +N + R VA LIISM P Subject 5492 EIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPNGRHTFA*RRTNP*TWHRSQ*TFSFLRRLPVIHRYPGLRSNFAFNALAFSSFALAIIHSGVA*CNTHPPFIQRFHRMLKITLHPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKP 6223
Range 4: 5491 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.5 bits(512) | 0.0 | 126/250(50%) | 0/250(0%) | Minus/Plus |
Query 32 RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC 781 R SC***EML +W + C+ + EWSGS+*SA+E*D +D RA + * L DE GDAA *A GG+FG* E E+ Q +CGL +AR Y* A +R +SI +* E V G *+S TCA+ F KC R KR +VYY SCGDGV G+LG+R P L ++ Q*C ILQ SE GY* P +*VH+V S A+ R +HQ E + S C*NGQ+ R Q+S +RES T V REFQ G +C Subject 5491 RVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGDAA*F*AFGGIFG*REGEYYITQRHCGLLQARSY*RQAR*RRSYSSIPGIGE*REDVEGS*RSTGTCAKFRG*FFFRRKCGDRSAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKC 6240
Range 5: 5574 to 6215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 108/214(50%) | 0/214(0%) | Minus/Plus |
Query 57 ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT 698 EC RIR+ERL SI V S **ARGCS I+S RW+LWM G * H A LWI SA LL A K ++P Y+ + GR +R +KV DLC+ L + KV P KA +S+L LWR GV R VG * +T S + SMMSYTA+I*R RVL+P++LSS C * G S SSS* I LLKRT+ T+FR +TRI Y C T Subject 5574 ECGRIRRERLSSIFWVMVMSS**ARGCSVILSIRWNLWMKGG*VLHYATPLWIIASAKLLKASALKAKLLLNPGYR*MTGRRRRKLKVYWDLCQVQGLVLLQAKVWRPFGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTT 6215
Range 6: 5493 to 5534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Plus |
Query 738 GFMLMMRDATRLA* 779 GFMLMMR+AT L * Subject 5493 GFMLMMRNATHLV* 5534
Range 7: 5667 to 6056 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 60/130(46%) | 0/130(0%) | Plus/Minus |
Query 216 GPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA 605 G QYP+ SD CSI HH*+ R G L PN P +TPSPQL +* T RF R HF +K+ AQV D P T S H + I+ R AC Q* RA NPQ C + S S HPK PP A Subject 5667 GLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAERSPHFRLKKN*PLNLAQVPVDL*LPSTSSRHSPIPGIEE*LRL*RACLQ*LRACNNPQWRCVM*YSPSLHPKIPPNA 6056
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 10
Range 1: 5633 to 6382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
451.0 bits(978) | 0.0 | 202/250(81%) | 0/250(0%) | Minus/Plus |
Query 31 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA 780 G HADDE+CY GVSVVTVNLNG+ARFRVRSNKTG++ EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY+KR+AT+G R +++V +S V SDGK S+ K L PVPSSGV SSSGESVAT Q SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA Subject 5633 GFHADDEKCYTPGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYRKREATEGKRIKDEVTPQSRVSVSDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQGASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA 6382
Range 2: 5632 to 6381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.7 bits(877) | 0.0 | 184/250(74%) | 0/250(0%) | Plus/Minus |
Query 32 AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP 781 AFAT LKFASYTRNPGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA F+SLQY TSLK+ +PKTGSSP TQLSLS HP+STA P+V F+ +VATLSPEEE TP LGTG R L++ D FPSL T D TS +R+PSVASR *STVALR V+LTLPSS+DST CL SRCIP LIT TSPS +CS PVLF+RTL RA PF+FTVTTLTP *H SSSA* P Subject 5632 AFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFKSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPMVDFDAPCRTVATLSPEEELTPELGTGPSRPLASFDVFPSLTDTRD*GVTSSLMRLPSVASRLR*STVALRKVILTLPSSRDSTECLKSRCIPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPGV*HFSSSA*NP 6381
Range 3: 5633 to 6364 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 130/244(53%) | 0/244(0%) | Plus/Minus |
Query 49 EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP 780 EIRV+H+* +ILV +RK V LVRFSN+I+ QLDE +E PR*+H+ELNC G STR LQI AVYDIIE D VLS* PT LI+TP LHS + L AL +TF R + HRS TF L LP+T Y G + VF A SS AL ++HS IA H P I R HR+L I LHPRAH++ +T+ ++ML NLS LIR HSK S TIQI+ +N Y R VA LIISM P Subject 5633 EIRVVHS*SGKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPR*IHNELNCRGFSTRGLQIFAVYDIIEGLYPQDWVLS*YPTVLINTPHLHSCADGRL*RALPNSRHTFA*RRTNPRTWHRSQ*TFSFLRRLPVTHRYAGLRSNFVFDALAFSSFALAIVHSGIA*SNTHPPFI*RFHRMLEITLHPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKP 6364
Range 4: 5779 to 6387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 101/203(50%) | 0/203(0%) | Minus/Plus |
Query 26 DELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSECTR 634 +E GDAA A GG+ * E E+ QC+CGL +AR Y* A+++R +SI +* E V G *+S TCA+ W F KC +R +VY+ SCGDGV *G+LG+RRGP L ++ Q*C ILQ E GY* P N*VH+V SAA+ R +HQ E + S C*NGQE R Q+S +RES R+T V REFQ G +C R Subject 5779 NEPGDAA*FQAFGGISR*REGEYYFTQCHCGLSQARSY*RQAHQRRSYSSIPRIGE*REDVEGS*RSTGTCAKFWG*FFFRRKCGDCSARRVKVYHRHSCGDGVY**GQLGIRRGPSLGDTILQ*CRILQRFEDRGY*SPGN*VHYVFSAAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSRITSVRREFQSGCKCAR 6387
Range 5: 5632 to 5751 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 25/40(62%) | 0/40(0%) | Minus/Plus |
Query 662 RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRA 781 R SC***EML W K C+ + EWSGS+*SA+E*D + RA Subject 5632 RVSC***EMLHTWCKRCHSKFEWSGSL*SAVE*DGRGCRA 5751
Range 6: 5715 to 6356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 111/214(52%) | 0/214(0%) | Minus/Plus |
Query 57 ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT 698 EC RIR+ERL SI V **ARGCS I S RW+L M G * AM LW SA LL A KT ++P Y+ V GR +R +KV DLC+ + L + KV KA +S+ LWR GV IR VG *ERT S + SMMSYTA+I*R RVL+P+QLSS C *RG S SSS* I LLKRTR T+FR +TRI Y C T Subject 5715 ECGRIRRERLSSIFWVMVMCS**ARGCSVISSIRWNL*MKGG*VLLYAMPLWTIASAKLLKASASKTKLLLNPAYR*VTGRRRRKLKVYWDLCQVLGLVLLQAKVWRLFGKARQSLPSAQLWRWGVLIRTVGY*ERTQSWGYNPSMMSYTAKI*RPRVLKPRQLSSLCI*RGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFPDYECTT 6356
Range 7: 5634 to 5675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Plus |
Query 738 GFMLMMRDATRLA* 779 GFMLMMR+AT L * Subject 5634 GFMLMMRNATHLV* 5675
Range 8: 5808 to 6206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 59/133(44%) | 0/133(0%) | Plus/Minus |
Query 207 QLLGPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA 605 QL G QYP+ S+ CSI HH*+ R GPLL PN PY +TPSPQL + T R + HF +K+ AQV D P T S H + I+ R AC Q* RA +PQ HC S S H + PP A Subject 5808 QLPGLQYPRSSNLCSIRHH*RIVSPRLGPLLIPNCPYQYTPSPQLCRW*TLTRLAEQSPHFRLKKN*PQNLAQVPVDL*LPSTSSRHSPIRGIEE*LRL*CACLQ*LRACDSPQWHCVK*YSPSLHLEIPPNA 6206
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 10
Range 1: 1707 to 2456 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
426.7 bits(925) | 0.0 | 194/250(78%) | 0/250(0%) | Minus/Plus |
Query 31 GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA 780 G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG++ EHLL D M+ GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R +++V +S V DGK S+ K L PVPSSGV SSSGESVAT Q +K TIG AVE GC K+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA Subject 1707 GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDXXXXXMTPGMQRDFKHSVESLDEGRVSITLRNATVDYHKREATEGKRVKDEVTPQSRVSVXDGKKSKEAKGLLGPVPSSGVSSSSGESVATVRQXATKSTIGTAVEMGCXXKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA 2456
Range 2: 1706 to 2455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
385.0 bits(834) | 0.0 | 178/250(71%) | 0/250(0%) | Plus/Minus |
Query 32 AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP 781 AFAT LKFASYTRNPGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKYMMNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLS HP+STA PIV F +VATLSPEEE TP LGTG R ++ D FPS T D TS R+PSVASR *STVALR+V+LTLPSS+DST CL SRCIP + S +CS PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P Subject 1706 AFATTLKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSXXXHPISTAVPIVDFVAXCRTVATLSPEEELTPELGTGPSRPFASFDFFPSXTETRD*GVTSSLTRLPSVASRL**STVALRNVILTLPSSRDSTECLKSRCIPGVXXXXXXSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP 2455
Range 3: 1707 to 2438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 125/244(51%) | 0/244(0%) | Plus/Minus |
Query 49 EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP 780 EIRV+H+* +ILV +RK V LVRFSN+I+ QLDE +E P *+HDELNC G STR LQI AVY IIE D VL+* PT L TP LHS +S L AL G +TFT R + H S TF L LP+ G + VF A SS AL++IHS IA C H P I R HR+L I LHPR H + ++ML NLS LIR HSK S T+Q++ +N Y R VA LIISM P Subject 1707 EIRVVHS*SRKILVNCERKLVSYSLVRFSNEISRSLQLDEQIETSPC*IHDELNCRGFSTRGLQIFAVYYIIEGLYPQDWVLT*YPTVLXXTPHLHSCADSRLCRALPDGRHTFT*RRTNPRTWHWSQ*TFCFLRLLPVXHRNAGLRSNFVFDALAFSSFALVIIHSGIA*CNTHPPFI*RFHRMLEITLHPRGHXXXXXISQKMLDNLSRLIRPHSKASLTVQVYCDNAYTRCVAFLIISMKP 2438
Range 4: 1862 to 2455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.9 bits(430) | 0.0 | 99/198(50%) | 0/198(0%) | Minus/Plus |
Query 32 GDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC 625 GDAA A GG+ * E E+ QC+CGL +AR Y* A ++R +SI * E V G +S T A+ W F *KC RP R +VYY SCGDGV G+LG+R GP L ++ Q*C ILQ SE GY* P N*VHHV S A+ R +HQ E + S C*NGQE R Q+S +RES +T V REFQ G +C Subject 1862 GDAA*FQAFGGISR*REGEYYITQCHCGLSQARSY*RQARQRRSYSSIPRFGX*REEVEGSKRSTGTSAKFWG*FFFR*KCGDRPAXRDKVYYRHSCGDGVXXXGQLGIR*GPSLGDTILQ*CSILQRSEDRGY*SPGN*VHHVFSTAMFRFVHQAEASARSRC*NGQESRTQVSARSLRESSWITSVRREFQSGCKC 2455
Range 5: 1706 to 1825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 24/40(60%) | 0/40(0%) | Minus/Plus |
Query 662 RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRA 781 R SC***EML +W K C+ + E SGS+*SA+E*D + RA Subject 1706 RVSC***EMLHIWCKRCHSKLERSGSL*SAVE*DGRGCRA 1825
Range 6: 1789 to 2430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 106/214(50%) | 0/214(0%) | Minus/Plus |
Query 57 ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT 698 EC RIR+ERL SI * RGCS I S RW+L M G * H AM LWI SA LL A KT ++P ++ GR +R KV D C+ + L +VKV P+ A +S+L LWR GV R VG * RT S + SMM YTA+I*R RVL+P+QLSSSC * G S SSS* I LLKRTR T+FR +TRI Y C T Subject 1789 ECGRIRRERLSSIFWEMXXXXX*PRGCSVISSIRWNL*MKGG*VLHYAMPLWIITSAKLLKASASKTKLLLNPAFRXXTGRSRRKQKVYWDQCQVLGLVLLQVKVWRPSGXARQSLLSAQLWRWGVXXRTVGY*VRTQSWGYNPSMM*YTAKI*RPRVLKPRQLSSSCI*HGDVSICSSS*SEREISLLKRTRE*DTSFRSQFTRIFLDYECTT 2430
Range 7: 1708 to 1749 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 11/14(79%) | 0/14(0%) | Minus/Plus |
Query 738 GFMLMMRDATRLA* 779 GFMLMMR+AT L * Subject 1708 GFMLMMRNATHLV* 1749
Range 8: 1882 to 2280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 61/133(46%) | 0/133(0%) | Plus/Minus |
Query 207 QLLGPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA 605 QL G QYP+ SD CSI HH*+ R GP L PN P +TPSPQL +* T R GR HFH +K+ A V D P T S I+ R AC Q* RA NPQ HC + S S H + PP A Subject 1882 QLPGLQYPRSSDLCSILHH*RIVSPRLGPHLIPNCPXXYTPSPQLCR**TLSRXAGRSPHFHLKKN*PQNLALVPVDLLLPSTSSRXXPKRGIEE*LRL*RACLQ*LRACDNPQWHCVM*YSPSLHLEIPPNA 2280
Nucleotide Sequence (418 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
266.4 | 1425.5 | 25% | 1.406e-69 | 79% | AF195822.1 | |
253.5 | 1330.6 | 25% | 1.024e-65 | 75% | KU674796.1 | |
246.7 | 1320.1 | 25% | 1.2e-63 | 74% | EF103901.1 | |
246.2 | 1278.8 | 27% | 1.648e-63 | 71% | KU674797.1 | |
216.4 | 1119.8 | 31% | 1.523e-54 | 60% | JQ023131.1 |
Alignments
Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds
Sequence ID: AF195822.1 Length: 12394 Number of Matches: 6
Range 1: 3521 to 3895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 111/125(89%) | 0/125(0%) | Plus/Plus |
Query 13 LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGKP 387 LYGLAAVFPRTSVHCFTF T +VLRCVFCCESYTTLLRENRG*T RRT+ F+V*VRSSTVDRMEVGLDFGTT ST CFSIPTQDD GCVSLVNS FVPTQIFIGSDMTYSIGHRAYSDF+ GKP Subject 3521 LYGLAAVFPRTSVHCFTFCTRSVVLRCVFCCESYTTLLRENRG*TSRRTNKFVV*VRSSTVDRMEVGLDFGTTFSTSCFSIPTQDDSGCVSLVNSPFVPTQIFIGSDMTYSIGHRAYSDFVAGKP 3895
Range 2: 3519 to 3908 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.4 bits(514) | 0.0 | 103/130(79%) | 0/130(0%) | Minus/Minus |
Query 11 CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD 400 C V LVC+ N+SKLC QCC SC FL*K ALERT NS TTRTP+ LAWGSKNR+C* * +NQVPLPSYLRLSYVPKR I WS Y FILDFRATMSYSSHNKIHSEAQ+ +Y+K*NSVQKFVGKLPQVHK+ Subject 3519 CKVHLVCQPQNRSKLCDQCCTSCRFL*KFALERTENSPTTRTPNRLAWGSKNRTC*K*SQNQVPLPSYLRLSYVPKRRICWSSYWFILDFRATMSYSSHNKIHSEAQHYEYKK*NSVQKFVGKLPQVHKE 3908
Range 3: 3520 to 3909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.1 bits(509) | 0.0 | 103/130(79%) | 0/130(0%) | Plus/Plus |
Query 12 SLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH 401 SLWTCGSFPTNFCTLFHF Y CASLCILL*ELYDIVARKSRIN+*+DQ I RLGT*LNRR*DGSGT*F Y+QH LFFDPHAR GVRVV EF VRSNA+FYRK HD+QHW+QSLL F QT+ T H Subject 3520 SLWTCGSFPTNFCTLFHFLYS*CCASLCILL*ELYDIVARKSRINQ*EDQQIRRLGT*LNRR*DGSGT*FWDYFQHVLFFDPHARRFGVRVVGEFSVRSNANFYRKRHDVQHWSQSLLRFCGWQTRWTLH 3909
Range 4: 3521 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.8 bits(504) | 0.0 | 108/129(84%) | 0/129(0%) | Minus/Minus |
Query 13 VGCVWFAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK 399 V WFA +I VSSV+NAV HV SYKNLRWNE RIH RHAPRI+LRGDRKT RA+SS +IKSHFHPIYG*ATYLNDE GP TGLSSIFAQQCRIALTTKYTAKHNTTS KSETVYRSSWENCRKSIK Subject 3521 VKSTWFASHKIGVSSVTNAVRHVASYKNLRWNERRIHQRHAPRIVLRGDRKTGRAESSPKIKSHFHPIYG*ATYLNDEFVGPPTGLSSIFAQQCRIALTTKYTAKHNTTSTKSETVYRSSWENCRKSIK 3907
Range 5: 3520 to 3894 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.5 bits(501) | 0.0 | 110/125(88%) | 0/125(0%) | Minus/Minus |
Query 12 GLPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R 386 GLP KSE*AL PML VMSLPIKICVGTN EFTNDTHP SSCVGIEKQ VL VVPKSSPTSILSTVELRT*T N LVLL VYPRFSRNNVV*LSQQNTQRST +V KVKQCTEVRGKTAASP*R Subject 3520 GLPATKSE*AL*PMLYVMSLPIKICVGTNGEFTNDTHPESSCVGIEKQDVLKVVPKSSPTSILSTVELRT*TTNLLVLLLVYPRFSRNNVV*LSQQNTQRSTTLRVQKVKQCTEVRGKTAASP*R 3894
Range 6: 3522 to 3827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 92/102(90%) | 0/102(0%) | Plus/Plus |
Query 14 FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF 319 FMDLRQFSHELLYTVSLF+LVVLCFAVYFVVRAIRHCCAKIEDKPV GP NSSFRYVAQP*IGWKWDLI LLSAR VFRSPRK IRGACR *IL SFQR+F Subject 3522 FMDLRQFSHELLYTVSLFVLVVLCFAVYFVVRAIRHCCAKIEDKPVGGPTNSSFRYVAQP*IGWKWDLILGLLSARPVFRSPRKTIRGACRW*ILRSFQRKF 3827
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6
Range 1: 9770 to 10141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 106/124(85%) | 0/124(0%) | Plus/Plus |
Query 13 LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGK 384 LYGLAAVFPRTSVHCFTFHTC +VLR VF CESYTTLLRENRG*TGRRT+ IV VR +TVDRMEVGLDFGTT ST CFSIPTQDD GCVSLVNS FVP+QIFIG+DMTYSIGHRAYSDF+ GK Subject 9770 LYGLAAVFPRTSVHCFTFHTCSVVLRRVFYCESYTTLLRENRG*TGRRTNESIVQVRRATVDRMEVGLDFGTTFSTSCFSIPTQDDSGCVSLVNSPFVPSQIFIGTDMTYSIGHRAYSDFVAGK 10141
Range 2: 9769 to 10140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.5 bits(488) | 0.0 | 106/124(85%) | 0/124(0%) | Minus/Minus |
Query 12 LPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R 383 LP KSE*ALCPML VMS+PIKIC GTN EFTNDTHP SSCVGIEK VL VVPKSSPTSILSTV RT*TM+ LVLLPVYPRFSRNNVV*LSQ NT+RST QV*KVKQCTEVRGKTAASP*R Subject 9769 LPATKSE*ALCPMLYVMSVPIKICDGTNGEFTNDTHPESSCVGIEKHDVLKVVPKSSPTSILSTVARRT*TMDSLVLLPVYPRFSRNNVV*LSQ*NTRRSTTLQV*KVKQCTEVRGKTAASP*R 10140
Range 3: 9768 to 10157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.8 bits(480) | 0.0 | 97/130(75%) | 0/130(0%) | Minus/Minus |
Query 11 CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD 400 C V VCR N+SKL V+CC SC FL*KS +ERT NS T RTP+HLAWG KN +C* * +N+VPLPSYLRL VP+R I WSF RFILDFRATMSYSSHNKIH EAQ+ KYEK*NSVQKFVGKLPQVHK+ Subject 9768 CKVHHVCRPQNRSKLYVRCCMSCRFL*KSVMERTENSPTIRTPNHLAWGLKNMTC*K*YQNRVPLPSYLRLRDVPERWIRWSFCRFILDFRATMSYSSHNKIHDEAQHYKYEK*NSVQKFVGKLPQVHKE 10157
Range 4: 9769 to 10158 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 97/130(75%) | 0/130(0%) | Plus/Plus |
Query 12 SLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH 401 SLWTCGSFPTNFCTLFHFSYL CAS CILL*ELYDIVARKSRINR KDQ IHR GT NRR*DGSGT F +Y+ H +FF+PHAR* GVR+V EF VRS DFYR HD+QH T SLL F RQT T H Subject 9769 SLWTCGSFPTNFCTLFHFSYL*CCASSCILL*ELYDIVARKSRINRQKDQRIHRSGTSRNRR*DGSGTRFWYYF*HVMFFNPHAR*FGVRIVGEFSVRSITDFYRNRHDIQHRT*SLLRFCGRQTWWTLH 10158
Range 5: 9770 to 10141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 100/124(81%) | 0/124(0%) | Minus/Minus |
Query 13 FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK 384 FAG +I VSS+S+AV HV SYKNL WNE RIH R+APRIILRGD KT RA SS +I+SHFHPIYG ATYLND GPS GLSSIFAQQCRIALT KYT KHNTTSMKSETVYRSSWENCRKSIK Subject 9770 FAGHKIGVSSMSDAVCHVGSYKNL*WNERRIHQRYAPRIILRGD*KT*RAKSSTKIESHFHPIYGCATYLNDGFVGPSAGLSSIFAQQCRIALTIKYTTKHNTTSMKSETVYRSSWENCRKSIK 10141
Range 6: 9771 to 10076 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 86/102(84%) | 0/102(0%) | Plus/Plus |
Query 14 FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF 319 FMDLRQFSHELLYTVSLFILVVLCF VYF+VRAIRHCCAKIEDKP EGP N SFRYVAQP*IGWKWD I LL AR VF+SPRKMIRGA R *IL SF RF Subject 9771 FMDLRQFSHELLYTVSLFILVVLCFVVYFIVRAIRHCCAKIEDKPAEGPTNPSFRYVAQP*IGWKWDSILVLLLARHVFQSPRKMIRGAYRW*ILRSFHHRF 10076
Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds
Sequence ID: EF103901.1 Length: 5715 Number of Matches: 6
Range 1: 3444 to 3815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
246.7 bits(532) | 0.0 | 104/124(84%) | 0/124(0%) | Plus/Plus |
Query 13 LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGK 384 LYGLAAVFPRTSV+CFTF TC +VLR VF CESYTTLL E+RG*TGRRT+ FIV VRSSTVDRMEVGLDFGTT ST CFSIPT+DD GCVSLVNS FVP+QIFIG+DMTYSIGHRAYSDF+ GK Subject 3444 LYGLAAVFPRTSVYCFTFCTCSVVLRRVFYCESYTTLLHEDRG*TGRRTNEFIVQVRSSTVDRMEVGLDFGTTFSTSCFSIPTRDDSGCVSLVNSPFVPSQIFIGTDMTYSIGHRAYSDFVAGK 3815
Range 2: 3442 to 3831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 97/130(75%) | 0/130(0%) | Minus/Minus |
Query 11 CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD 400 C V VCR N++KL V+CC SC FL*KS + RT NS T RTP+HLAWG KN +C* * RN+VPLPSYLRLSYVP+R*I WSFYRFILD RATMSYSSHNKIH EAQ+ KY+K*NS+QKFVGKLPQVHK+ Subject 3442 CKVHHVCRPQNRNKLYVRCCTSCRFL*KSVMVRTENSPTIRTPNHLAWGLKNMTC*K*YRNRVPLPSYLRLSYVPER*IRWSFYRFILDLRATMSYSSHNKIHGEAQHYKYKK*NSIQKFVGKLPQVHKE 3831
Range 3: 3443 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 96/130(74%) | 0/130(0%) | Plus/Plus |
Query 12 SLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH 401 SLWTCGSFPTNFC LFHF YL CAS CILL*ELYDIVAR+SRINR*KDQ IHR GT*LNRR*DGSGT FR+Y+ H +FF+PHAR* GVR+V EF VR+ DFYR HD+QH T SL F RQT T H Subject 3443 SLWTCGSFPTNFCILFHFLYL*CCASPCILL*ELYDIVARRSRINR*KDQRIHRSGT*LNRR*DGSGTRFRYYF*HVMFFNPHAR*FGVRIVGEFSVRTITDFYRNRHDVQHRT*SLFRFCGRQTWWTLH 3832
Range 4: 3443 to 3814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 104/124(84%) | 0/124(0%) | Minus/Minus |
Query 12 LPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R 383 LP KSE*ALCPML VMS+PIKIC GTN EFTNDTHP SS VGIEK VL VVPKSSPTSILSTVELRT*TMN LVLLPVYPR S NNVV*LSQ NT+RST QV KVKQ TEVRGKTAASP*R Subject 3443 LPATKSE*ALCPMLYVMSVPIKICDGTNGEFTNDTHPESSRVGIEKHDVLKVVPKSSPTSILSTVELRT*TMNSLVLLPVYPRSSCNNVV*LSQ*NTRRSTTLQVQKVKQYTEVRGKTAASP*R 3814
Range 5: 3444 to 3815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 100/124(81%) | 0/124(0%) | Minus/Minus |
Query 13 FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK 384 FAG +I +SS+S+AV HV SYKNL W E RIH R+APRII RGD KT RA SS EI+SHFHPIYG*ATYLNDE GPSTGLSSIF QQCRIALT KYTAKHNTTS KSETVYRSSWENCRKSIK Subject 3444 FAGHKIGISSMSDAVRHVGSYKNL*WYERRIHQRYAPRIISRGD*KT*RAKSSTEIESHFHPIYG*ATYLNDEFVGPSTGLSSIFVQQCRIALTIKYTAKHNTTSTKSETVYRSSWENCRKSIK 3815
Range 6: 3445 to 3750 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 86/102(84%) | 0/102(0%) | Plus/Plus |
Query 14 FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF 319 FMDLRQFSHELLYTVSLF+LVVLCFAVYF+VRAIRHCC KIEDKPVEGP NSSFRYVAQP*IGWKWD IS LL AR VF+SPR+MIRGA R *IL S+ RF Subject 3445 FMDLRQFSHELLYTVSLFVLVVLCFAVYFIVRAIRHCCTKIEDKPVEGPTNSSFRYVAQP*IGWKWDSISVLLLARHVFQSPREMIRGAYRW*ILRSYHHRF 3750
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6
Range 1: 10033 to 10401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
246.2 bits(531) | 0.0 | 103/123(84%) | 0/123(0%) | Plus/Plus |
Query 16 YGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGK 384 YGLAAVFPRTSVHCFTFHTC +VLR VF CES TTLLR+NRG*TGRRT+ FIV VR STVDRMEVGLDFGTT ST C+SIPTQ D GCVSLVNS FVP+QIFIG+DMTYSIGHRAYSDF+ GK Subject 10033 YGLAAVFPRTSVHCFTFHTCSVVLRRVFYCESCTTLLRKNRG*TGRRTNEFIVQVRRSTVDRMEVGLDFGTTFSTSCYSIPTQGDSGCVSLVNSPFVPSQIFIGTDMTYSIGHRAYSDFVAGK 10401
Range 2: 10020 to 10400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 102/127(80%) | 0/127(0%) | Minus/Minus |
Query 3 LPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*RHRH 383 LP KSE*ALCPML VMS+PIKIC GTN EFTNDTHP S CVGIE VL VVPKSSPTSILSTVE RT TMN LVLLPVYPRF RNNVV LSQ NT+RST QV*KVKQCTEVRGKTAASP*+ ++ Subject 10020 LPATKSE*ALCPMLYVMSVPIKICDGTNGEFTNDTHPESPCVGIE*HDVLKVVPKSSPTSILSTVERRTCTMNSLVLLPVYPRFLRNNVVQLSQ*NTRRSTTLQV*KVKQCTEVRGKTAASP*KPKN 10400
Range 3: 10028 to 10417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.5 bits(453) | 0.0 | 94/130(72%) | 0/130(0%) | Minus/Minus |
Query 11 CWVCLVCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKD 400 C V CR N+SK V+CC SC FL*KS +ERT NS T RTP+HLAW N +C* * +N+VPLPSYLRLS VP R*I WSF RFILDF ATMSYSSHNKIH EAQ+ KYEK*NSVQKFVGKLPQVHK+ Subject 10028 CKVHHFCRPQNRSKPYVRCCMSCRFL*KSVMERTENSPTIRTPNHLAWELNNTTC*K*YQNRVPLPSYLRLSDVPVR*IRWSFCRFILDFCATMSYSSHNKIHDEAQHYKYEK*NSVQKFVGKLPQVHKN 10417
Range 4: 10032 to 10418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.0 bits(441) | 0.0 | 92/129(71%) | 0/129(0%) | Plus/Plus |
Query 15 LWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHTQH 401 LWTCGSFPTNFCTLFHFSYL CAS CILL*ELYDIVA+KSRINR KDQ IHR GT LNRR*DGSGT F +Y+ H + F+ HAR* GVR+V EF VRS DFYR HD+QH T LL F RQ T H Subject 10032 LWTCGSFPTNFCTLFHFSYL*CCASSCILL*ELYDIVAQKSRINRQKDQRIHRTGTSLNRR*DGSGTRFWYYF*HVVLFNSHAR*FGVRIVGEFSVRSITDFYRNRHDIQHRT*GLLRFCGRQKWWTLH 10418
Range 5: 10027 to 10401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 97/125(78%) | 0/125(0%) | Minus/Minus |
Query 10 FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIKT 384 FAG +I VS +S+AV HV SYKNL WNE RIH R+APRI LRG+ T RA SS +I+SHFHPIYG*ATYL DE GPS GLSSIFAQQCR ALT KYT KHNTTSMKSETVYRSSWENCRKSIKT Subject 10027 FAGHKIGVSPMSDAVCHVGSYKNL*WNERRIHQRYAPRITLRGN*ITRRAKSSTKIESHFHPIYG*ATYLYDEFVGPSAGLSSIFAQQCRTALTIKYTTKHNTTSMKSETVYRSSWENCRKSIKT 10401
Range 6: 10028 to 10336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 83/103(81%) | 0/103(0%) | Plus/Plus |
Query 11 VFMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF 319 VFMDLRQFSHELLYTVSLFILVVLCF VYF+VRA+RHCCAKIEDKP EGP NSS+RYVAQP*IGWKWD I LL AR V + PRK+IRGA R *IL SF RF Subject 10028 VFMDLRQFSHELLYTVSLFILVVLCFVVYFIVRAVRHCCAKIEDKPAEGPTNSSYRYVAQP*IGWKWDSILVLLLARRVIQFPRKVIRGAYRW*ILRSFHHRF 10336
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 9676 to 10050 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 91/125(73%) | 0/125(0%) | Plus/Plus |
Query 13 LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGKP 387 LYGLA VFPRTS++ F+F+T +V +F +SY+ LL ENRG*TG RT FIV*VRSSTVD MEVGLDFGTT ST CFS+P++DD GCV+LVNS FVPTQ+FIGSDMTYSIGHRAYSDF+ GKP Subject 9676 LYGLATVFPRTSIYRFSFYTSSLVFCRIFYRKSYSALLCENRG*TGARTRKFIV*VRSSTVDGMEVGLDFGTTFSTACFSVPSEDDSGCVTLVNSPFVPTQVFIGSDMTYSIGHRAYSDFVAGKP 10050
Range 2: 9676 to 10047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 92/124(74%) | 0/124(0%) | Minus/Minus |
Query 13 FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK 384 FA +I V SV NA+ H+TSYKNLRWNE RIH R+AP II R +RKT R +SSAEIKSHFH +YG*ATYL DE G TGLSSIFAQQCRIALT KYT KH TS+K ETVYRSSWENCRKSIK Subject 9676 FACYKIGVGSVPNAIRHITSYKNLRWNERRIHQRYAPGIIFRWNRKTSRTESSAEIKSHFHSVYG*ATYLYDEFPGSRTGLSSIFAQQCRIALTIKYTTKHKATSIKRETVYRSSWENCRKSIK 10047
Range 3: 9677 to 9982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 85/102(83%) | 0/102(0%) | Plus/Plus |
Query 14 FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF 319 FMDLRQFSHELLYTVSLFILV LCF VYF+VRAIRHCCAKIEDKPV P NSS+RYVAQP* WKWDLISALLS R VFR RKMI GA R *IL SFQRRF Subject 9677 FMDLRQFSHELLYTVSLFILVALCFVVYFIVRAIRHCCAKIEDKPVREPGNSSYRYVAQP*TEWKWDLISALLSVRLVFRFHRKMIPGA*RW*ILRSFQRRF 9982
Range 4: 9675 to 10049 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 89/125(71%) | 0/125(0%) | Minus/Minus |
Query 12 GLPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R 386 GLP KSE*ALCPML V+SLPIK CVGTN EFTN THP SS G EKQ VL VVPKSSPTSI STVELRT TMN LVL PVYPRFS N+ *L + N +++T V*K K+ EVRGKT ASP*R Subject 9675 GLPATKSE*ALCPMLYVISLPIKTCVGTNGEFTNVTHPESSSDGTEKQAVLKVVPKSSPTSIPSTVELRTYTMNFLVLAPVYPRFSHNSAE*LLR*NIRQNTRLLV*KEKRYIEVRGKTVASP*R 10049
Range 5: 9669 to 10058 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 81/130(62%) | 0/130(0%) | Plus/Plus |
Query 6 SVSLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHT 395 ++SLWTC SFPTNF F F Y C IL *EL+ V RKSRINR ++Q IHR+GT*LNRR +GSGT*FRHY+Q+ LFF R* VR V EF VRSNA FYRK*+D+ HW QSLL F RQT+ T Subject 9669 TLSLWTCDSFPTNFYIPFLFLY**PCVLSYILS*ELFGTVVRKSRINRCENQEIHRIGT*LNRRRNGSGT*FRHYFQYGLFFGSIGR*FRVRNVGEFSVRSNAGFYRK*YDV*HWAQSLLRFCSRQTRGT 10058
Range 6: 9671 to 10048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 76/126(60%) | 0/126(0%) | Minus/Minus |
Query 8 VCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKDT 385 VC N+S+LC QC S HFL*K ALERT NS T RT +HL KN+ * *CRNQVPLP LRLSYVP R*ISW +RFILDFR T+ SS++KI+ + Q Y+K N + KFVGKL QVHK++ Subject 9671 VCLLQNRSRLCAQCYTSYHFL*KPALERTENSPTLRTRNHLPMEPKNKPY*K*CRNQVPLPFRLRLSYVPIR*ISWFSHRFILDFRTTVPNSSYDKIYDKTQGY*YKKRNGI*KFVGKLSQVHKES 10048
Nucleotide Sequence (646 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
427.2 | 1788.1 | 36% | 1.022e-117 | 52% | KU674797.1 | |
421.7 | 1768.8 | 34% | 4.618e-116 | 52% | KU674796.1 | |
408.0 | 1720.2 | 36% | 6.346e-112 | 62% | AF195822.1 | |
363.5 | 1205.8 | 57% | 1.511e-98 | 50% | JQ023131.1 | |
363.5 | 1205.8 | 57% | 1.511e-98 | 50% | NC_016509.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 13
Range 1: 16051 to 16692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
427.2 bits(926) | 0.0 | 176/214(82%) | 0/214(0%) | Minus/Plus |
Query 4 QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG 645 +N L + FGGSHGAKLRPFVYYG SYYYNERMTPTEIS D+ DYVDIEI+LNLSKK+VVTAASVNGIDMPCLGY LKNGSLRFGHEIIFHVI DDLHYL+D STRNKRIEGLYTESKIKVDDGDVLL D+EMAG R +R YSNNKGVEPSVHV NVR W+TLF+IT+SVTTTDV + EN+MLYYEVFDKNLEDVAK C YSEIPN VAG Subject 16051 KNTLELGVDFGGSHGAKLRPFVYYGGSYYYNERMTPTEISTDMLDYVDIEISLNLSKKSVVTAASVNGIDMPCLGYTLKNGSLRFGHEIIFHVIGDDLHYLIDKSTRNKRIEGLYTESKIKVDDGDVLLGDIEMAGNRSDRAYSNNKGVEPSVHVTNVRDWRTLFDITSSVTTTDVAYPTIENAMLYYEVFDKNLEDVAKVCGYSEIPNVAVAG 16692
Range 2: 16095 to 16604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.6 bits(617) | 0.0 | 142/170(84%) | 0/170(0%) | Plus/Minus |
Query 92 IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA 601 I FS TSVVVTE VISN V Q LTF+TCTEGSTPLLFEY LS RLPAIS S SSTSPSSTFI DSVYSPSIRLFLVD+S R*CKSS +T*NIISCPNRSDPFFR YP+HGISIPLTEAAVTT FF+RLRLIS+ST*SNIS+DISVGVIRSL**YE P**TKGRN A Subject 16095 IAFSIVGYATSVVVTEDVISNNVLQSLTFVTCTEGSTPLLFEYALSERLPAISMSPSSTSPSSTFIFDSVYSPSIRLFLVDLSIR*CKSSPMT*NIISCPNRSDPFFRVYPKHGISIPLTEAAVTTLFFDRLRLISIST*SNISVDISVGVIRSL**YEPP**TKGRNLA 16604
Range 3: 16641 to 16694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 12/18(67%) | 0/18(0%) | Plus/Minus |
Query 2 DPATVAFGISE*LQAFAT 55 +PAT FGISE* FAT Subject 16641 NPATATFGISE*PHTFAT 16694
Range 4: 16363 to 16692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 75/110(68%) | 0/110(0%) | Plus/Minus |
Query 4 SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IFKFFMSNVRRCD*SCYFEQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFISG* 333 SGNR VRYFRI F YVF*IFI+YFIV+H IF + NVRR D CY E P SHV +VH GL+PFIV*I S+*+ TCHLD+S**Y++V++LYF FCIQPFDSFISG* Subject 16363 SGNRHVRYFRITAYFRYVF*IFIEYFIVKHRIFNCRVRNVRRRDRRCYIE*CSPISHVCDVHRGLNPFIV*ICSV*AITCHLDVS**YVSVINLYF*FCIQPFDSFISG* 16692
Range 5: 16076 to 16303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 60/76(79%) | 0/76(0%) | Plus/Minus |
Query 393 TAATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN 620 TAAT FSE+TL TAYRFH*LK L HFSL D*D*SQ RN YLSISQ SFVHCNNMN+HSKQRAVT RHDYPR+ Subject 16076 TAATRFSEYTLSTAYRFH*LKRLLRHFSLTD*D*SQYLRNPTYLSISQSESFVHCNNMNHHSKQRAVT*RHDYPRS 16303
Range 6: 16361 to 16693 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 74/111(67%) | 0/111(0%) | Minus/Plus |
Query 3 HQPEINESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD 335 +QPEINESKGCIQN K*R T YY*E SRWQV E+IQTIKG SP CT T*E+G S * L S+RRTL LK++C TMKY IKI*KT*+K IRKYRT RLPD Subject 16361 NQPEINESKGCIQNQK*RLMTETYY*ETSRWQVIAQTEHIQTIKGLSPLCTSQT*EIGEHYSI*HLLSRRRTLRTLQLKMRCFTMKYSIKI*KT*RKYAVIRKYRTWRLPD 16693
Range 7: 16079 to 16315 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 61/79(77%) | 0/79(0%) | Minus/Plus |
Query 381 SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR 617 SGVVMA SYGPLFTMV+HIITMNE* +LRYR+I IT LRL+LI QRK+ *+ LQ MESICRA*G+L*K GRCGSDTR Subject 16079 SGVVMALSYGPLFTMVVHIITMNE*LRLRYRQICWIT*ILRLVLICQRKVS*QPLQSMESICRA*GIL*KTGRCGSDTR 16315
Range 8: 16075 to 16314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 62/80(78%) | 0/80(0%) | Plus/Minus |
Query 382 LVSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI 621 LVSEPQRP+FQSIP*ARHIDSI+*S Y FL*+IK NLN+ VI++I RYLS HSFIVII* TIVNKGP*L AMTTPE+ Subject 16075 LVSEPQRPVFQSIP*ARHIDSID*SGCYDTFL*QIKTNLNIYVIQHICRYLSRSHSFIVII*TTIVNKGP*LSAMTTPEV 16314
Range 9: 16556 to 16693 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 30/46(65%) | 0/46(0%) | Plus/Minus |
Query 3 IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQIFHV*RPSL*LK 140 IRQP RSVFPN+ L LRLLDFY+ILHS+A +FQ+ RPS * K Subject 16556 IRQPPRSVFPNNRILSLRLLDFYRILHSKASHFQL*GTQRPSS*QK 16693
Range 10: 16340 to 16408 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 21/23(91%) | 0/23(0%) | Plus/Minus |
Query 288 F*ILYTALRFVYFWLMYLLDNVN 356 F ILYTALRFVYFWL+YLLDNVN Subject 16340 FLILYTALRFVYFWLIYLLDNVN 16408
Range 11: 16080 to 16409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 88/110(80%) | 0/110(0%) | Minus/Plus |
Query 287 RG*SWREVTAXXXXXXXXXXX*TNDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVYRI*N 616 RG*SWR VTALCLLW FILLQ*TND +*DI+RY+ LR +*D*S*S KEKC N FS WNRYAV RV SEK VAAVRTRDYISR+ RRFTLS+R INQK*TNRRAVYRI N Subject 16080 RG*SWR*VTALCLLWWFILLQ*TNDSD*DIDRYVGLRRY*D*S*SVKEKCRNSRFSQWNRYAVLRVYSEKRVAAVRTRDYISRHWRRFTLSNR*INQK*TNRRAVYRIKN 16409
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 13
Range 1: 15790 to 16431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
421.7 bits(914) | 0.0 | 175/214(82%) | 0/214(0%) | Minus/Plus |
Query 4 QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG 645 +N L + FGGSHGAKLRPFVYYG+SYYYNERMTPTEISRD+ DYVDIEI+LNLSKK VVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHV DDDLHYLVD STRNKRIEGL TESK++VDDGDVLL DVEMAG R +R YSNNKGVEPSVHV NVR W+TLF++TASVTTTDV + E MLYYE+FDKNLEDVAK C YSEIPN VAG Subject 15790 KNTLELGVDFGGSHGAKLRPFVYYGDSYYYNERMTPTEISRDMLDYVDIEISLNLSKKRVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVNDDDLHYLVDKSTRNKRIEGLCTESKVEVDDGDVLLGDVEMAGERSDRAYSNNKGVEPSVHVTNVRDWRTLFDVTASVTTTDVVYPTIEKEMLYYELFDKNLEDVAKVCGYSEIPNVAVAG 16431
Range 2: 15834 to 16343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
286.1 bits(618) | 0.0 | 143/170(84%) | 0/170(0%) | Plus/Minus |
Query 92 IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA 601 I FS TSVVVTEAV SN V Q LTF+TCTEGSTPLLFEY LS R PAISTS S+TSPSST DSV+SPSIRLFLVD+STR*CKSSS+T*NIISCPNRSDPFFRAYP+HGISIPLTEAAVTT FFERLRLIS+ST*SNISLDISVGVIRSL**YE P**TKGRN A Subject 15834 ISFSIVGYTTSVVVTEAVTSNNVLQSLTFVTCTEGSTPLLFEYALSERSPAISTSPSNTSPSSTSTFDSVHSPSIRLFLVDLSTR*CKSSSLT*NIISCPNRSDPFFRAYPKHGISIPLTEAAVTTLFFERLRLISIST*SNISLDISVGVIRSL**YESP**TKGRNLA 16343
Range 3: 16380 to 16433 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 12/18(67%) | 0/18(0%) | Plus/Minus |
Query 2 DPATVAFGISE*LQAFAT 55 +PAT FGISE* FAT Subject 16380 NPATATFGISE*PHTFAT 16433
Range 4: 16102 to 16431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 73/110(66%) | 0/110(0%) | Plus/Minus |
Query 4 SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IFKFFMSNVRRCD*SCYFEQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFISG* 333 SGNR+VRYFRI F YVF*IFI+ FIV+H F + NVRR D SCY E P SHV +VH GLDPFIV*+ S+*+ TCH D+S**YITV++LYF F QPFDSFISG* Subject 16102 SGNRNVRYFRITAYFRYVF*IFIE*FIVKHLFFNCRVYNVRRRDRSCYIE*CSPISHVCDVHRGLDPFIV*VCSV*ALTCHFDVS**YITVINLYF*FSTQPFDSFISG* 16431
Range 5: 15814 to 16053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 62/80(78%) | 0/80(0%) | Plus/Minus |
Query 382 LVSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI 621 LVSEPQRP+FQSIP*ARHID IN*S RY FL KIK NLN+ V+++ISRYLS HSF+VII*ITIVN+GP*L AMTTPE+ Subject 15814 LVSEPQRPVFQSIP*ARHIDPIN*SGRYNSFLRKIKTNLNIYVVQHISRYLSRSHSFVVII*ITIVNEGP*LSAMTTPEV 16053
Range 6: 16100 to 16432 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 74/111(67%) | 0/111(0%) | Minus/Plus |
Query 3 HQPEINESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD 335 +QPEINESKGC+ N K*R TVMYY*E S+WQV E+ QTIKGSSP CT T*E+G S *QL S+RRTL LK +C TM Y IKI*KT*+K IRKYRTLRLPD Subject 16100 NQPEINESKGCVLNQK*RLMTVMYY*ETSKWQVSAQTEHTQTIKGSSPLCTSQT*EIGEHYSM*QLLSRRRTLYTLQLKKRCFTMNYSIKI*KT*RKYAVIRKYRTLRLPD 16432
Range 7: 15818 to 16054 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 62/79(78%) | 0/79(0%) | Minus/Plus |
Query 381 SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR 617 SGVVMA SYGP FTMVIHIIT NE* +LRYREI T LRL+LIF+RK *R LQLM SICRA*GML*K GRCGSDTR Subject 15818 SGVVMALSYGPSFTMVIHIITTNE*LRLRYREICWTT*ILRLVLIFRRKEL*RPLQLMGSICRA*GML*KTGRCGSDTR 16054
Range 8: 15815 to 16042 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 57/76(75%) | 0/76(0%) | Plus/Minus |
Query 393 TAATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN 620 TAAT FSEHTL TAYR H*LK PL FS KD*D*SQ R+ YLSISQ SFV CNNMN+HSK+RAVT RHDYPR+ Subject 15815 TAATRFSEHTLSTAYRSH*LKRPLQLFSSKD*D*SQYLRSPTYLSISQSESFVRCNNMNHHSKRRAVT*RHDYPRS 16042
Range 9: 16295 to 16432 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 29/46(63%) | 0/46(0%) | Plus/Minus |
Query 3 IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQIFHV*RPSL*LK 140 IRQP RSVFPN+ L LRLLDFY+I+HS+A FQ+ + RPS * K Subject 16295 IRQPQRSVFPNNRILSLRLLDFYRIIHSKASLFQL*GIQRPSS*QK 16432
Range 10: 16079 to 16141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 19/21(90%) | 0/21(0%) | Plus/Minus |
Query 294 ILYTALRFVYFWLMYLLDNVN 356 I YTALRFVYFWL+YLLDNVN Subject 16079 IQYTALRFVYFWLIYLLDNVN 16141
Range 11: 15819 to 16136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 88/106(83%) | 0/106(0%) | Minus/Plus |
Query 299 RG*SWREVTAXXXXXXXXXXX*TNDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY 616 RG*SWR VTAL LLW*FILLQ TND +*DIERY+ LR +*D*S*SF+EK NG FS*W+RYAV RVCSEK VAAVRTRDYISR *RRFTLSSR INQK*TNRRAVY Subject 15819 RG*SWR*VTALRLLW*FILLQRTNDSD*DIERYVGLRRY*D*S*SFEEKSCNGRFS*WDRYAVLRVCSEKRVAAVRTRDYISRQ*RRFTLSSR*INQK*TNRRAVY 16136
Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds
Sequence ID: AF195822.1 Length: 12394 Number of Matches: 13
Range 1: 9549 to 10190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
408.0 bits(884) | 0.0 | 170/214(79%) | 0/214(0%) | Minus/Plus |
Query 4 QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG 645 +N L + FGGSHGAKLRPFVYYG SYYYNE+MTPTEIS D+ DYVD+EI+L LSKK VVTAASVNGID+PC+GY L+NGSLRFGHEIIFHV D++L YLVD STRNKRIEGLYTE+ IKVDDG+VLL DVEMA R+ R YSNNKGVEPSVHV NVRG KTLF+ITASV TTDVRH K E +MLYYEVFDKNLEDVAK CSYSEIPN TVAG Subject 9549 KNTLELGVDFGGSHGAKLRPFVYYGGSYYYNEQMTPTEISSDLLDYVDVEISLTLSKKRVVTAASVNGIDVPCIGYTLENGSLRFGHEIIFHVNDEELRYLVDKSTRNKRIEGLYTEAVIKVDDGNVLLGDVEMADTRINRAYSNNKGVEPSVHVTNVRGLKTLFDITASVKTTDVRHGKLEKAMLYYEVFDKNLEDVAKVCSYSEIPNVTVAG 10190
Range 2: 9861 to 10190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 79/110(72%) | 0/110(0%) | Plus/Minus |
Query 4 SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IFKFFMSNVRRCD*SCYFEQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFISG* 333 SGNR+VRYFRI T F YVF*IFIKYFIV+H FKF +SN+R D SCY EQ TSHV NVHG LDPFIV*+ S+ S H DI+** ITVVDL +RFCIQPFDSFISG* Subject 9861 SGNRNVRYFRITTHFRYVF*IFIKYFIVKHCFFKFSVSNIRCLDRSCYIEQSFQTSHVRNVHGRLDPFIV*VRSVYSCIRHFDIA**DITVVDLNYRFCIQPFDSFISG* 10190
Range 3: 9573 to 9812 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 57/80(71%) | 0/80(0%) | Plus/Minus |
Query 382 LVSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI 621 LVSEPQRP+FQSIP ARH+DS+ *S RY FL*K + NLNV VI+ I+RYLS GH FIVI+ TIVNK P*L AMTTPE+ Subject 9573 LVSEPQRPVFQSIPYARHVDSVY*SGRYDSFL*KSQTNLNVYVIQQIARYLSRGHLFIVIVRTTIVNKRP*LSAMTTPEV 9812
Range 4: 9593 to 10102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 136/170(80%) | 0/170(0%) | Plus/Minus |
Query 92 IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA 601 I FS+F CLTSVV+TEAVISNKVF+PLTF+TCTEGSTPLLFEY L R+ AISTS S T PSST I SVYSPSIRLFLVD+STR* SSS+T*NIISCPNRSDPF R YP HG SIP TEAAVTT FFER+RLIS ST*SN SLDISVGVI SL** E P**TKGRN A Subject 9593 IAFSSFPCLTSVVLTEAVISNKVFKPLTFVTCTEGSTPLLFEYALFIRVSAISTSPSKTLPSSTLITASVYSPSIRLFLVDLSTR*RNSSSLT*NIISCPNRSDPFSRVYPMHGTSIPFTEAAVTTLFFERVRLISTST*SNRSLDISVGVICSL***EPP**TKGRNLA 10102
Range 5: 10139 to 10192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 14/18(78%) | 0/18(0%) | Plus/Minus |
Query 2 DPATVAFGISE*LQAFAT 55 +PATV FGISE*L FAT Subject 10139 NPATVTFGISE*LHTFAT 10192
Range 6: 9859 to 10191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 79/111(71%) | 0/111(0%) | Minus/Plus |
Query 3 HQPEINESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD 335 +QPEINESKGCIQ RSTTVM Y* MS+W++ +* E QTIKGSS PCTL T*EV + CS *QL S++R LD +NLK QC TMKYLIKI*KT*+K V IRKYRTLRLPD Subject 9859 NQPEINESKGCIQKR*LRSTTVMSY*AMSKWRIHE*TERTQTIKGSSLPCTLRT*EV*KLCSI*QLLSRQRMLDTENLKKQCFTMKYLIKI*KT*RKCVVIRKYRTLRLPD 10191
Range 7: 9577 to 9813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 56/79(71%) | 0/79(0%) | Minus/Plus |
Query 381 SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR 617 SGVVMA SYG LFTMV+ ITMN+*P+LRYR I IT TLRL+ +FQRK *R LQ ES CRA*G+L K GRCGSDTR Subject 9577 SGVVMALSYGLLFTMVVLTITMNK*PRLRYRAICWIT*TLRLV*LFQRKES*RPLQ*TESTCRA*GILWKTGRCGSDTR 9813
Range 8: 9574 to 9801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 51/76(67%) | 0/76(0%) | Plus/Minus |
Query 393 TAATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN 620 TAAT F E+TL TA RF LK PL FSLK+ D*SQ RN SISQ GSFVHCN+ N+HSKQ+AVT RHDYPR+ Subject 9574 TAATRFPEYTLCTARRFRLLKRPLRLFSLKESD*SQRLRNPTDRSISQSGSFVHCNSKNHHSKQKAVT*RHDYPRS 9801
Range 9: 10069 to 10191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 33/41(80%) | 0/41(0%) | Plus/Minus |
Query 3 IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQIFHV*RP 125 IRQP*RSVFPN+Y L LRLLDFYQILHS+AL FQ+F V* P Subject 10069 IRQP*RSVFPNNYTLSLRLLDFYQILHSKALLFQVFRV*HP 10191
Range 10: 9841 to 9900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 17/20(85%) | 0/20(0%) | Plus/Minus |
Query 294 ILYTALRFVYFWLMYLLDNV 353 +LYTALRFVYFWL+Y LDNV Subject 9841 LLYTALRFVYFWLIYPLDNV 9900
Range 11: 9578 to 9898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 82/107(77%) | 0/107(0%) | Minus/Plus |
Query 296 RG*SWREVTAXXXXXXXXXXX*TNDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVYR 616 RG*SWR VTA CLLW F+LLQ*TNDP+*DIER + LR *D*S SFKEK NG FS NR AV RV S K VAAVRTRDYISR *RR TLSS INQK*TNRRAVYR Subject 9578 RG*SWR*VTAFCLLWWFLLLQ*TNDPD*DIERSVGLRRR*D*SDSFKEKSRNGRFSKRNRRAVHRVYSGKRVAAVRTRDYISR**RRITLSSG*INQK*TNRRAVYR 9898
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 11
Range 1: 15702 to 16343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
363.5 bits(787) | 0.0 | 150/214(70%) | 0/214(0%) | Minus/Plus |
Query 4 QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG 645 +NVL + FGG+HGAKLRPFVYYG SYYYNE+M PT+IS D+ DYV++EI+L LSKK VVTAA +NGID+PCLGYALKNG+LRFGHEIIF V DD LHYL+D STRNKRIEGLYTE +KVD GDVLL DV+MAG L+R YSN G+EPS+HV NV WK+LF ++AS T T V EN+MLYYEV D+NLEDVAK C Y EIP ATVAG Subject 15702 KNVLELGVDFGGTHGAKLRPFVYYGGSYYYNEQMVPTDISEDVLDYVNVEISLTLSKKRVVTAALINGIDVPCLGYALKNGTLRFGHEIIFKVDDDSLHYLLDKSTRNKRIEGLYTELVVKVDGGDVLLGDVDMAGTPLDRAYSNKTGIEPSIHVANVGDWKSLFVLSASDTRTGVEQPYTENAMLYYEVVDRNLEDVAKTCGYFEIPTATVAG 16343
Range 2: 15746 to 16255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 114/170(67%) | 0/170(0%) | Plus/Minus |
Query 92 IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA 601 I FS C T V+V+EA +NK+FQ TF TC EGS P+LFEY LS+ +PAISTS + TSP ST +SVY+PSIRLFLVD+S R*CK SS T IISCPNRS PFF+A PRHG SIP +AAVTT FFER++LIS T*SN S DISVG I SL**YE P**TKGR+ A Subject 15746 IAFSV*GCSTPVLVSEADKTNKLFQSPTFATCIEGSIPVLFEYALSSGVPAISTSPNKTSPPSTLTTNSVYNPSIRLFLVDLSNR*CKLSSSTLKIISCPNRSVPFFKA*PRHGTSIPFIKAAVTTLFFERVKLISTFT*SNTSSDISVGTICSL**YEPP**TKGRSLA 16255
Range 3: 16243 to 16344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 21/34(62%) | 0/34(0%) | Plus/Minus |
Query 3 IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQ 104 I+Q *RSVF NS LRLL+FY++LHS+AL+F+ Subject 16243 IQQQ*RSVFQNSRTFSLRLLNFYRLLHSKALHFR 16344
Range 4: 15726 to 15962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 44/79(56%) | 0/79(0%) | Plus/Minus |
Query 385 VSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI 621 VSE QR +FQ + *ARH+DS+ *S RY FL*+ + +LNV++I+YI RY+SW H I+II* T+VNKG * M+ PE+ Subject 15726 VSESQRSVFQGVT*ARHVDSVY*SSRYDSFL*ESQTDLNVHIIQYIFRYISWNHLLIIII*TTVVNKGS*FSTMSAPEV 15962
Range 5: 16023 to 16196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 31/58(53%) | 0/58(0%) | Plus/Minus |
Query 151 EQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFI 324 +Q P SHV NV+ LDP V*+ S+* TCH+++S * +T +DL F IQPFDSFI Subject 16023 KQAFPVSHVRNVYRRLDPRFV*VRSV*WRTCHINVSQ*NVTAIDLND*FSIQPFDSFI 16196
Range 6: 16245 to 16343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 22/33(67%) | 0/33(0%) | Plus/Minus |
Query 4 SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IF 102 S N S RYF+IA F YVF*I I YFIV+H IF Subject 16245 SSNSSGRYFKIAARFRYVF*ISIDYFIVKHCIF 16343
Range 7: 16024 to 16344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 53/107(50%) | 0/107(0%) | Minus/Plus |
Query 3 INESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD 323 INESKGCI N RS V +Y E WQV * E QT +GSS TL T E G+ C QL ++ + + K+QC TMK I+I*KT*+K AI KYR L L D Subject 16024 INESKGCILN*SLRSMAVTFYWETLIWQVRH*TERTQTKRGSSLLYTLRTWETGKACLFYQLLTRGQASNNPIPKMQCFTMK*SIEI*KT*RKRAAILKYRPLLLLD 16344
Range 8: 15730 to 15966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 41/79(52%) | 0/79(0%) | Minus/Plus |
Query 381 SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR 617 SG +M +Y PLFT V+HII M++ QL YR++Y I TLR + + QRK *R L ES CRA* *K RC SDT+ Subject 15730 SGALMVLNYDPLFTTVVHIIIMSKWFQLIYRKMYWIM*TLRSV*LSQRKES*RLL**TESTCRA*VTP*KTERCDSDTK 15966
Range 9: 15727 to 15951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 40/75(53%) | 0/75(0%) | Plus/Minus |
Query 396 AATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN 620 AA FS LGTA RF LK PL FSL++ +*SQ N I+L I QL F H NNMN+ SKQR V H+ PR+ Subject 15727 AAFRFSRRNLGTARRFRLLKQPLRLFSLRESN*SQRSHNPIHLPIYQLEPFAHYNNMNHRSKQRVVV*HHECPRS 15951
Range 10: 15991 to 16053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 14/21(67%) | 0/21(0%) | Plus/Minus |
Query 294 ILYTALRFVYFWLMYLLDNVN 356 I YT LRFVY +YL+DNVN Subject 15991 IQYTTLRFVYS*SIYLIDNVN 16053
Range 11: 15800 to 16048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 45/83(54%) | 0/83(0%) | Minus/Plus |
Query 299 NDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY 547 N N* I R I L *D S KEK NG F+ NR AVPR+ EK AA+RTR+Y *R+FTLS R I+ +*TNRR VY Subject 15800 NGSN*YIGRCIGLCER*DQFDSLKEKSRNGCFNKRNRRAVPRLRLEKRNAAIRTRNYF*S**RQFTLSIR*ID*E*TNRRVVY 16048
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 11
Range 1: 15702 to 16343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
363.5 bits(787) | 0.0 | 150/214(70%) | 0/214(0%) | Minus/Plus |
Query 4 QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG 645 +NVL + FGG+HGAKLRPFVYYG SYYYNE+M PT+IS D+ DYV++EI+L LSKK VVTAA +NGID+PCLGYALKNG+LRFGHEIIF V DD LHYL+D STRNKRIEGLYTE +KVD GDVLL DV+MAG L+R YSN G+EPS+HV NV WK+LF ++AS T T V EN+MLYYEV D+NLEDVAK C Y EIP ATVAG Subject 15702 KNVLELGVDFGGTHGAKLRPFVYYGGSYYYNEQMVPTDISEDVLDYVNVEISLTLSKKRVVTAALINGIDVPCLGYALKNGTLRFGHEIIFKVDDDSLHYLLDKSTRNKRIEGLYTELVVKVDGGDVLLGDVDMAGTPLDRAYSNKTGIEPSIHVANVGDWKSLFVLSASDTRTGVEQPYTENAMLYYEVVDRNLEDVAKTCGYFEIPTATVAG 16343
Range 2: 15746 to 16255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 114/170(67%) | 0/170(0%) | Plus/Minus |
Query 92 IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA 601 I FS C T V+V+EA +NK+FQ TF TC EGS P+LFEY LS+ +PAISTS + TSP ST +SVY+PSIRLFLVD+S R*CK SS T IISCPNRS PFF+A PRHG SIP +AAVTT FFER++LIS T*SN S DISVG I SL**YE P**TKGR+ A Subject 15746 IAFSV*GCSTPVLVSEADKTNKLFQSPTFATCIEGSIPVLFEYALSSGVPAISTSPNKTSPPSTLTTNSVYNPSIRLFLVDLSNR*CKLSSSTLKIISCPNRSVPFFKA*PRHGTSIPFIKAAVTTLFFERVKLISTFT*SNTSSDISVGTICSL**YEPP**TKGRSLA 16255
Range 3: 16243 to 16344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 21/34(62%) | 0/34(0%) | Plus/Minus |
Query 3 IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQ 104 I+Q *RSVF NS LRLL+FY++LHS+AL+F+ Subject 16243 IQQQ*RSVFQNSRTFSLRLLNFYRLLHSKALHFR 16344
Range 4: 15726 to 15962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 44/79(56%) | 0/79(0%) | Plus/Minus |
Query 385 VSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI 621 VSE QR +FQ + *ARH+DS+ *S RY FL*+ + +LNV++I+YI RY+SW H I+II* T+VNKG * M+ PE+ Subject 15726 VSESQRSVFQGVT*ARHVDSVY*SSRYDSFL*ESQTDLNVHIIQYIFRYISWNHLLIIII*TTVVNKGS*FSTMSAPEV 15962
Range 5: 16023 to 16196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 31/58(53%) | 0/58(0%) | Plus/Minus |
Query 151 EQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFI 324 +Q P SHV NV+ LDP V*+ S+* TCH+++S * +T +DL F IQPFDSFI Subject 16023 KQAFPVSHVRNVYRRLDPRFV*VRSV*WRTCHINVSQ*NVTAIDLND*FSIQPFDSFI 16196
Range 6: 16245 to 16343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 22/33(67%) | 0/33(0%) | Plus/Minus |
Query 4 SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IF 102 S N S RYF+IA F YVF*I I YFIV+H IF Subject 16245 SSNSSGRYFKIAARFRYVF*ISIDYFIVKHCIF 16343
Range 7: 16024 to 16344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 53/107(50%) | 0/107(0%) | Minus/Plus |
Query 3 INESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD 323 INESKGCI N RS V +Y E WQV * E QT +GSS TL T E G+ C QL ++ + + K+QC TMK I+I*KT*+K AI KYR L L D Subject 16024 INESKGCILN*SLRSMAVTFYWETLIWQVRH*TERTQTKRGSSLLYTLRTWETGKACLFYQLLTRGQASNNPIPKMQCFTMK*SIEI*KT*RKRAAILKYRPLLLLD 16344
Range 8: 15730 to 15966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 41/79(52%) | 0/79(0%) | Minus/Plus |
Query 381 SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR 617 SG +M +Y PLFT V+HII M++ QL YR++Y I TLR + + QRK *R L ES CRA* *K RC SDT+ Subject 15730 SGALMVLNYDPLFTTVVHIIIMSKWFQLIYRKMYWIM*TLRSV*LSQRKES*RLL**TESTCRA*VTP*KTERCDSDTK 15966
Range 9: 15727 to 15951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 40/75(53%) | 0/75(0%) | Plus/Minus |
Query 396 AATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN 620 AA FS LGTA RF LK PL FSL++ +*SQ N I+L I QL F H NNMN+ SKQR V H+ PR+ Subject 15727 AAFRFSRRNLGTARRFRLLKQPLRLFSLRESN*SQRSHNPIHLPIYQLEPFAHYNNMNHRSKQRVVV*HHECPRS 15951
Range 10: 15991 to 16053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 14/21(67%) | 0/21(0%) | Plus/Minus |
Query 294 ILYTALRFVYFWLMYLLDNVN 356 I YT LRFVY +YL+DNVN Subject 15991 IQYTTLRFVYS*SIYLIDNVN 16053
Range 11: 15800 to 16048 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 45/83(54%) | 0/83(0%) | Minus/Plus |
Query 299 NDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY 547 N N* I R I L *D S KEK NG F+ NR AVPR+ EK AA+RTR+Y *R+FTLS R I+ +*TNRR VY Subject 15800 NGSN*YIGRCIGLCER*DQFDSLKEKSRNGCFNKRNRRAVPRLRLEKRNAAIRTRNYF*S**RQFTLSIR*ID*E*TNRRVVY 16048
Nucleotide Sequence (326 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
181.9 | 917.5 | 22% | 2.366e-44 | 76% | KU674797.1 | |
178.3 | 890.1 | 22% | 2.847e-43 | 77% | KU674796.1 | |
186.4 | 927.6 | 25% | 1.056e-45 | 77% | JQ023131.1 | |
186.4 | 927.6 | 25% | 1.056e-45 | 77% | NC_016509.1 | |
100.7 | 778.1 | 37% | 9.609e-33 | 76% | KT000364.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 8
Range 1: 5027 to 5341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.9 bits(399) | 0.0 | 86/105(82%) | 0/105(0%) | Minus/Plus |
Query 4 RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE 318 RC VDKGKKVVDYDEELNMRKEK RL +EKRRE HGGL PVVFKEPKCE +DDDSDEE+E YLCLSS+K ERG+A+PSGCKSADGK + EESPERK +SSAIIKE Subject 5027 RCTVDKGKKVVDYDEELNMRKEKCRLDLEKRREGHGGLNPVVFKEPKCEGKDDDSDEENESYLCLSSTKAERGDASPSGCKSADGKSVPEESPERKMKSSAIIKE 5341
Range 2: 5022 to 5342 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 85/107(79%) | 0/107(0%) | Plus/Minus |
Query 3 LL**SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRVXXXXXXXXXXXXXXXLRRNQRPSSLYRRCTST 323 LL**SLTI SFSP FPP+++FHQRTYNHWA HVPLW SLSTDS RSLHPN HP+ HTSVL*TQQ+LGHHAL VS P AC SPSAYS LRRNQRPSSLYR+ TST Subject 5022 LL**SLTISSFSPDFPPVHSFHQRTYNHWAKRRHVPLWWSLSTDSFRSLHPNRHPSPHTSVL*TQQDLGHHALHVSFPNPACTSPSAYSILRRNQRPSSLYRQYTST 5342
Range 3: 5028 to 5291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 71/88(81%) | 0/88(0%) | Minus/Plus |
Query 54 GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY 317 G SIKGRRSLITTK+*ICGRRSAG +W+RD K MVA* LLCLKNRSV GRM IRMKR KAICA*A PK NV LRPVVVSPLME VY Subject 5028 GVLSIKGRRSLITTKN*ICGRRSAGWIWKRDVKGMVA*ILLCLKNRSVRGRMTIRMKRTKAICA*APPKRNVATLRPVVVSPLMERVY 5291
Range 4: 5021 to 5179 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 43/53(81%) | 0/53(0%) | Plus/Minus |
Query 166 LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL 324 LPLTLRFFKHNR *ATM F SL QPALLLPHIQ FVVINDLLPFID P+L Subject 5021 LPLTLRFFKHNRI*ATMPFTSLFQIQPALLLPHIQFFVVINDLLPFIDSTPRL 5179
Range 5: 5209 to 5343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 35/45(78%) | 0/45(0%) | Plus/Minus |
Query 2 SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR* 136 +SL+IADD +FLSGLSS FPSADLQPLG ASPRS L ELKHR* Subject 5209 ASLMIADDFIFLSGLSSGTLFPSADLQPLGEASPRSALVELKHR* 5343
Range 6: 5080 to 5340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 66/87(76%) | 0/87(0%) | Minus/Plus |
Query 5 YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR 265 YAEGE QA +G+ET RAWWP SCCV*RTEV* G* FG*RER+LSVLKL QSGTW +AQWL*VR*WK GGK GEKD IVSD+ R Subject 5080 YAEGEVQAGFGKET*RAWWPKSCCV*RTEV*GEG*RFG*RERKLSVLKLHQSGTWRRFAQWL*VR*WKECTGGKSGEKDEIVSDH*R 5340
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8
Range 1: 4962 to 5276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.3 bits(391) | 0.0 | 86/105(82%) | 0/105(0%) | Minus/Plus |
Query 4 RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE 318 RC VDKGKKVVDYDEELNMRKEK RL +EKRRE HGGLIPVVFKEPKCE +DDDSDEESE YLCLSS K ERG+A+PSGCKSADGK +SE+S ERK +SSAIIK+ Subject 4962 RCTVDKGKKVVDYDEELNMRKEKCRLDLEKRREGHGGLIPVVFKEPKCEGKDDDSDEESEDYLCLSSIKAERGDASPSGCKSADGKSVSEDSLERKMKSSAIIKD 5276
Range 2: 4957 to 5274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 83/106(78%) | 0/106(0%) | Plus/Minus |
Query 6 L**SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRVXXXXXXXXXXXXXXXLRRNQRPSSLYRRCTST 323 L**SLTI SFSPG+PPI++FHQRTYNHWA HVPL SLSTDSLRSL PN HP+ HTSVL*TQ+ELGHHAL VS P AC SPSAYSTLRR+QRPSSLY++ TST Subject 4957 L**SLTISSFSPGYPPIHSFHQRTYNHWAKRRHVPL*WSLSTDSLRSLRPNRHPSPHTSVL*TQRELGHHALHVSFPNPACTSPSAYSTLRRSQRPSSLYQQYTST 5274
Range 3: 4956 to 5114 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 42/53(79%) | 0/53(0%) | Plus/Minus |
Query 166 LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL 324 LPLTLRFFKHN N*ATM F SL QPALLLPHIQLFVV+NDLLPFI+ P+L Subject 4956 LPLTLRFFKHNGN*ATMPFTSLFQIQPALLLPHIQLFVVVNDLLPFINSTPRL 5114
Range 4: 5144 to 5278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 35/45(78%) | 0/45(0%) | Plus/Minus |
Query 2 SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR* 136 +SL+IADD +FLS LSSD FPSADLQPLG ASPRS L ELKHR* Subject 5144 ASLMIADDFIFLSRLSSDTLFPSADLQPLGEASPRSALMELKHR* 5278
Range 5: 4963 to 5226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 68/88(77%) | 0/88(0%) | Minus/Plus |
Query 54 GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY 317 G IKGRRSL TTKS*ICGRRSAG +W+RD K MVA*F LCLKNRSV GRM IR KRAK ICA*A K NV LRPVVVSPLME VY Subject 4963 GVLLIKGRRSLTTTKS*ICGRRSAGWIWKRDVKGMVA*FPLCLKNRSVRGRMTIRTKRAKTICA*APSKRNVATLRPVVVSPLMERVY 5226
Range 6: 5015 to 5275 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 67/87(77%) | 0/87(0%) | Minus/Plus |
Query 5 YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR 265 YAEGE QA +G+ET RAWWPNS CV*RTEV* G* FG RERRLSVLKL QSGTW +AQWL*VR*WK IGG PGEKD IVSD+ R Subject 5015 YAEGEVQAGFGKET*RAWWPNSRCV*RTEV*GEG*RFGRRERRLSVLKLHQSGTWRRFAQWL*VR*WKECIGG*PGEKDEIVSDH*R 5275
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 9
Range 1: 4886 to 5200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.4 bits(409) | 0.0 | 89/105(85%) | 0/105(0%) | Minus/Plus |
Query 4 RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE 318 R IVDKGKKVVDYDEELNMRKEK RL +EKRREEHGGLIPVVFKEPKCE +DD+S+EESEGYLCLSS+KVERG+A+PSGCKSAD K ISEESPERKT+SSAII++ Subject 4886 RRIVDKGKKVVDYDEELNMRKEKCRLIIEKRREEHGGLIPVVFKEPKCEGKDDESEEESEGYLCLSSTKVERGDASPSGCKSADCKSISEESPERKTKSSAIIED 5200
Range 2: 4880 to 5038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 47/53(89%) | 0/53(0%) | Plus/Minus |
Query 166 LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL 324 LPLTLRFFKHNRN*ATMLF+SLL+ QPALLLPHIQLFVVINDLLPFID+ P+L Subject 4880 LPLTLRFFKHNRN*ATMLFSSLLYNQPALLLPHIQLFVVINDLLPFIDNTPRL 5038
Range 3: 5065 to 5202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 38/46(83%) | 0/46(0%) | Plus/Minus |
Query 2 SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*P 139 +S IIADD VFLSGLSSDI SADLQPLG ASPRSTL ELKHR*P Subject 5065 TSSIIADDFVFLSGLSSDILLQSADLQPLGEASPRSTLVELKHR*P 5202
Range 4: 4939 to 5199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 67/87(77%) | 0/87(0%) | Minus/Plus |
Query 5 YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR 265 YAEGE Q Y EETRRAWWPNSCCV*RTEV* G G RERRLSVLKL QSG W +AQWL*VR* + YIGGKPGEKD IVSDY+R Subject 4939 YAEGEVQVDYREETRRAWWPNSCCV*RTEV*GEGRRIGRRERRLSVLKLYQSGAWRRFAQWL*VR*LQEYIGGKPGEKDEIVSDYRR 5199
Range 5: 4887 to 5150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 71/88(81%) | 0/88(0%) | Minus/Plus |
Query 54 GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY 317 G SIKGRRSLITTKS*ICGRRSAG L RRD KSMVA*FLLCLKNRSV GR R KRAKAICA*A PKW+V LRPVVVSPL+ VY Subject 4887 GVLSIKGRRSLITTKS*ICGRRSAG*L*RRDEKSMVA*FLLCLKNRSVRGRTTNRKKRAKAICA*ALPKWSVATLRPVVVSPLIARVY 5150
Range 6: 4977 to 5192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 56/72(78%) | 0/72(0%) | Plus/Minus |
Query 12 *SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRV 227 *SLTI SFSPGFPPIY+ +QRTYNHWA H PLW SLSTDSLRSL P P+ HTSVL*TQQELGHHAL V Subject 4977 *SLTISSFSPGFPPIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRSLLPIRRPSPHTSVL*TQQELGHHALLV 5192
Range 7: 4884 to 4931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 13/16(81%) | 0/16(0%) | Plus/Minus |
Query 273 LRRNQRPSSLYRRCTS 320 LRRNQRPSSLYR+ S Subject 4884 LRRNQRPSSLYRQYAS 4931
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 9
Range 1: 4886 to 5200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.4 bits(409) | 0.0 | 89/105(85%) | 0/105(0%) | Minus/Plus |
Query 4 RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE 318 R IVDKGKKVVDYDEELNMRKEK RL +EKRREEHGGLIPVVFKEPKCE +DD+S+EESEGYLCLSS+KVERG+A+PSGCKSAD K ISEESPERKT+SSAII++ Subject 4886 RRIVDKGKKVVDYDEELNMRKEKCRLIIEKRREEHGGLIPVVFKEPKCEGKDDESEEESEGYLCLSSTKVERGDASPSGCKSADCKSISEESPERKTKSSAIIED 5200
Range 2: 4880 to 5038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 47/53(89%) | 0/53(0%) | Plus/Minus |
Query 166 LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL 324 LPLTLRFFKHNRN*ATMLF+SLL+ QPALLLPHIQLFVVINDLLPFID+ P+L Subject 4880 LPLTLRFFKHNRN*ATMLFSSLLYNQPALLLPHIQLFVVINDLLPFIDNTPRL 5038
Range 3: 5065 to 5202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 38/46(83%) | 0/46(0%) | Plus/Minus |
Query 2 SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*P 139 +S IIADD VFLSGLSSDI SADLQPLG ASPRSTL ELKHR*P Subject 5065 TSSIIADDFVFLSGLSSDILLQSADLQPLGEASPRSTLVELKHR*P 5202
Range 4: 4939 to 5199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 67/87(77%) | 0/87(0%) | Minus/Plus |
Query 5 YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR 265 YAEGE Q Y EETRRAWWPNSCCV*RTEV* G G RERRLSVLKL QSG W +AQWL*VR* + YIGGKPGEKD IVSDY+R Subject 4939 YAEGEVQVDYREETRRAWWPNSCCV*RTEV*GEGRRIGRRERRLSVLKLYQSGAWRRFAQWL*VR*LQEYIGGKPGEKDEIVSDYRR 5199
Range 5: 4887 to 5150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 71/88(81%) | 0/88(0%) | Minus/Plus |
Query 54 GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY 317 G SIKGRRSLITTKS*ICGRRSAG L RRD KSMVA*FLLCLKNRSV GR R KRAKAICA*A PKW+V LRPVVVSPL+ VY Subject 4887 GVLSIKGRRSLITTKS*ICGRRSAG*L*RRDEKSMVA*FLLCLKNRSVRGRTTNRKKRAKAICA*ALPKWSVATLRPVVVSPLIARVY 5150
Range 6: 4977 to 5192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 56/72(78%) | 0/72(0%) | Plus/Minus |
Query 12 *SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRV 227 *SLTI SFSPGFPPIY+ +QRTYNHWA H PLW SLSTDSLRSL P P+ HTSVL*TQQELGHHAL V Subject 4977 *SLTISSFSPGFPPIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRSLLPIRRPSPHTSVL*TQQELGHHALLV 5192
Range 7: 4884 to 4931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 13/16(81%) | 0/16(0%) | Plus/Minus |
Query 273 LRRNQRPSSLYRRCTS 320 LRRNQRPSSLYR+ S Subject 4884 LRRNQRPSSLYRQYAS 4931
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 13
Range 1: 1170 to 1307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.7 bits(218) | 0.0 | 42/46(91%) | 0/46(0%) | Minus/Plus |
Query 172 VDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCE 309 VDKGKKVVDYDEE NMRKEKRR MEKRRE HGGLIPVVFKEPKCE Subject 1170 VDKGKKVVDYDEESNMRKEKRRXXMEKRREVHGGLIPVVFKEPKCE 1307
Range 2: 1325 to 1414 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 25/30(83%) | 0/30(0%) | Minus/Plus |
Query 5 YAQWL*VR*WKVYIGGKPGEKDGIVSDYQR 94 +AQWL*VR*WK YI GKPGEKD IVSDY+R Subject 1325 FAQWL*VR*WKEYIRGKPGEKDEIVSDYRR 1414
Range 3: 1155 to 1310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 41/52(79%) | 0/52(0%) | Plus/Minus |
Query 169 PLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL 324 PLTLR FKHNRN*ATM F+SLLH PALLLPH++LFVVIND LPFID P+L Subject 1155 PLTLRLFKHNRN*ATMHFSSLLHXXPALLLPHVRLFVVINDFLPFIDXXPRL 1310
Range 4: 1327 to 1407 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 24/27(89%) | 0/27(0%) | Plus/Minus |
Query 12 *SLTIPSFSPGFPPIYTFHQRTYNHWA 92 *SLTI SFSPGFP IY+FHQRTYNHWA Subject 1327 *SLTISSFSPGFPLIYSFHQRTYNHWA 1407
Range 5: 1162 to 1311 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 39/50(78%) | 0/50(0%) | Minus/Plus |
Query 168 GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSG 317 G SIKGR+SLITTKS CGRRSAG WRRD K MVA*FLLCLK+RSV G Subject 1162 GXXSIKGRKSLITTKSRTCGRRSAGXXWRRDEKCMVA*FLLCLKSRSVRG 1311
Range 6: 1323 to 1415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.9 bits(127) | 0.0 | 25/31(81%) | 0/31(0%) | Minus/Plus |
Query 4 ATPSGCKSADGKCISEESPERKTESSAIIKE 96 A+PSGCKSADGK ISEESPERKT+ SAII++ Subject 1323 ASPSGCKSADGKSISEESPERKTKLSAIIED 1415
Range 7: 1322 to 1417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 26/32(81%) | 0/32(0%) | Plus/Minus |
Query 2 SSLIIADDSVFLSGLSSDIHFPSADLQPLGVA 97 +S IIAD+ VFLSGLSSDI FPSADLQPLG A Subject 1322 TSSIIADNFVFLSGLSSDILFPSADLQPLGEA 1417
Range 8: 1252 to 1314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 17/21(81%) | 0/21(0%) | Plus/Minus |
Query 165 PAAHTSVL*TQQELGHHALRV 227 P+ HTS L*TQQELGHHAL V Subject 1252 PSPHTSAL*TQQELGHHALLV 1314
Range 9: 1156 to 1206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 14/17(82%) | 0/17(0%) | Plus/Minus |
Query 273 LRRNQRPSSLYRRCTST 323 LRRNQR SSLYR TST Subject 1156 LRRNQRLSSLYRXXTST 1206
Range 10: 1214 to 1315 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 26/34(76%) | 0/34(0%) | Minus/Plus |
Query 164 YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG 265 +AEGEAQ GEETR AWWPNSCCV*R EV* G Subject 1214 HAEGEAQVXXGEETRSAWWPNSCCV*RAEV*GDG 1315
Range 11: 1324 to 1365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 13/14(93%) | 0/14(0%) | Minus/Plus |
Query 54 LRPVVVSPLMESVY 95 LRPVVVSPLME VY Subject 1324 LRPVVVSPLMERVY 1365
Nucleotide Sequence (325 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
223.3 | 1133.6 | 27% | 8.486e-57 | 82% | KU674797.1 | |
220.5 | 1110.2 | 27% | 5.681e-56 | 80% | KU674796.1 | |
222.8 | 1151.9 | 27% | 1.165e-56 | 82% | KT000364.1 | |
221.9 | 1121.2 | 27% | 2.196e-56 | 80% | JQ023131.1 | |
221.9 | 1121.2 | 27% | 2.196e-56 | 80% | NC_016509.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6
Range 1: 6512 to 6805 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(482) | 0.0 | 95/98(97%) | 0/98(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP 324 + FHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP Subject 6512 LVFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP 6805
Range 2: 6523 to 6804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 92/94(98%) | 0/94(0%) | Minus/Minus |
Query 42 GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS 323 GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+LTLFMYSPTKALLANLTHPRKFIAS Subject 6523 GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSLTLFMYSPTKALLANLTHPRKFIAS 6804
Range 3: 6514 to 6804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.0 bits(441) | 0.0 | 83/97(86%) | 0/97(0%) | Plus/Plus |
Query 33 SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA 323 SVS*CDEFAWM *+ *EGFGRRIHEEC+ VRGEFTTWWRQDNASR R+F KEEACEDC+SEHRK CGY*LGYSSQRR+EG FG EDRELVDC*FSA Subject 6514 SVS*CDEFAWMC*IG*EGFGRRIHEECKAVRGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKCCGY*LGYSSQRRKEGD*FGGEDRELVDC*FSA 6804
Range 4: 6518 to 6805 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 83/96(86%) | 0/96(0%) | Minus/Minus |
Query 37 GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK 324 GPRINNPRVRGLR+QI LLL FSGSNSRVNIRS SCVRC NLRTLLPS+I V+ETRCLASTRW*IHRGQP+TLHVF+DQSPLS N STQIHRIMK Subject 6518 GPRINNPRVRGLRHQISLLLSFSGSNSRVNIRSTSCVRCGNLRTLLPSKIFVDETRCLASTRW*IHRGQPYTLHVFADQSPLSQSNTSTQIHRIMK 6805
Range 5: 6492 to 6806 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 86/105(82%) | 0/105(0%) | Plus/Plus |
Query 11 CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKGXXXXXXXXXXXXXGLLILGP 325 C ++ * FMMR*ICVD L LRGLWS NT*RV*GCPR*IHHLVEARQRVS T+I EGRSVRRL QRTQE LRILTRLFEPEK RRR IW RRPRTRGLLILGP Subject 6492 C*FVMIY*CFMMR*ICVDVLDWLRGLWSANT*RV*GCPR*IHHLVEARQRVSSTNILEGRSVRRLPQRTQEVLRILTRLFEPEKERRRLIWWRRPRTRGLLILGP 6806
Range 6: 6513 to 6716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 57/68(84%) | 0/68(0%) | Minus/Minus |
Query 32 YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL 235 YPQ FLCSL QSSHASSF+N R+RDALSCLHQVVNSPRT HSSCI RPKPS* * IHANSSHHETL Subject 6513 YPQHFLCSLWQSSHASSFQNIRRRDALSCLHQVVNSPRTALHSSCIRRPKPS*PI*HIHANSSHHETL 6716
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6
Range 1: 6447 to 6740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(476) | 0.0 | 93/98(95%) | 0/98(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP 324 + FHDAMNLRGCVRLAKRALVGEYMKSV+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADIN+AIRAREGKKE DLVAKTANSWIVNSRP Subject 6447 LVFHDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINAAIRAREGKKETDLVAKTANSWIVNSRP 6740
Range 2: 6458 to 6739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 90/94(96%) | 0/94(0%) | Minus/Minus |
Query 42 GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS 323 GRELTIHEFAVFATKS SFFPSLARIA LISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+ TLFMYSPTKALLANLTHPRKFIAS Subject 6458 GRELTIHEFAVFATKSVSFFPSLARIAALISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIAS 6739
Range 3: 6449 to 6739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.3 bits(444) | 0.0 | 83/97(86%) | 0/97(0%) | Plus/Plus |
Query 33 SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA 323 SVS*CDEFAWM *+ *EGFGRRIHEECE +RGEFTTWWRQDNASR*R+F KEEACEDC+SEHRK C Y* GYSSQRR+EG RFG EDRELVDC*FSA Subject 6449 SVS*CDEFAWMC*IG*EGFGRRIHEECEAIRGEFTTWWRQDNASR*RIFWKEEACEDCHSEHRKCCRY*RGYSSQRRKEGDRFGGEDRELVDC*FSA 6739
Range 4: 6453 to 6740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 82/96(85%) | 0/96(0%) | Minus/Minus |
Query 37 GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK 324 GPRINNPRVRGLR+QI LLL FSGSNSRVNI S SCVRC NLRTLLPS+I VNETRCLASTRW*IHRG HTLHVF+DQSPLS N STQIHRIMK Subject 6453 GPRINNPRVRGLRHQIGLLLSFSGSNSRVNICSTSCVRCGNLRTLLPSKIFVNETRCLASTRW*IHRG*LHTLHVFADQSPLSQSNTSTQIHRIMK 6740
Range 5: 6427 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 84/105(80%) | 0/105(0%) | Plus/Plus |
Query 11 CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKGXXXXXXXXXXXXXGLLILGP 325 C ++ * FMMR*ICVD L LRGLWS NT*RV* PR*IHHLVEARQRVSLT+I EGRSVRRL QRTQE L+ILTRLFEPEK RRR IW RRPRTRGLLILGP Subject 6427 C*FVMIY*CFMMR*ICVDVLDWLRGLWSANT*RV*SYPR*IHHLVEARQRVSLTNILEGRSVRRLPQRTQEVLQILTRLFEPEKERRRPIWWRRPRTRGLLILGP 6741
Range 6: 6448 to 6651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 57/68(84%) | 0/68(0%) | Minus/Minus |
Query 32 YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL 235 Y Q FLCSL QSSHASSF+N RQRDALSCLHQVVNSPR SHSSCI RPKPS* * IHANSSHHETL Subject 6448 YLQHFLCSLWQSSHASSFQNIRQRDALSCLHQVVNSPRIASHSSCIRRPKPS*PI*HIHANSSHHETL 6651
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6
Range 1: 2586 to 2879 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.8 bits(481) | 0.0 | 94/98(96%) | 0/98(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP 324 + FHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DL+AKTANSWIVNSRP Subject 2586 LVFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLIAKTANSWIVNSRP 2879
Range 2: 2588 to 2878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.7 bits(460) | 0.0 | 88/97(91%) | 0/97(0%) | Plus/Plus |
Query 33 SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA 323 SVS*CDEFAWM *+ EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVF KEEACEDC+SEHRK CGY*LGYSSQRREEG RF SEDRELVDC*FSA Subject 2588 SVS*CDEFAWMC*IGKEGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFWKEEACEDCHSEHRKCCGY*LGYSSQRREEGDRFDSEDRELVDC*FSA 2878
Range 3: 2597 to 2878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.8 bits(456) | 0.0 | 91/94(97%) | 0/94(0%) | Minus/Minus |
Query 42 GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS 323 GRELTIHEFAVFA KS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKAL ANLTHPRKFIAS Subject 2597 GRELTIHEFAVFAIKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALFANLTHPRKFIAS 2878
Range 4: 2592 to 2879 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 87/96(91%) | 0/96(0%) | Minus/Minus |
Query 37 GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK 324 GPRINNPRVRGLRYQI LLLPFSGSNSRVNIRS SCVRC NLRTLLPS+ILVNETRCLASTRW*IHRGQPHTLHVF+DQSPL N STQIHRIMK Subject 2592 GPRINNPRVRGLRYQIGLLLPFSGSNSRVNIRSTSCVRCGNLRTLLPSKILVNETRCLASTRW*IHRGQPHTLHVFADQSPLCQSNTSTQIHRIMK 2879
Range 5: 2566 to 2820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 70/85(82%) | 0/85(0%) | Plus/Plus |
Query 11 CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG 265 C ++ * FMMR*ICVD L RGLWS NT*RV*GCPR*IHHLVEARQRVSLTSI EGRSVRRL QRTQE LRILTRLFEPEKG Subject 2566 C*FVMIY*CFMMR*ICVDVLDWQRGLWSANT*RV*GCPR*IHHLVEARQRVSLTSILEGRSVRRLPQRTQEVLRILTRLFEPEKG 2820
Range 6: 2587 to 2790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 60/68(88%) | 0/68(0%) | Minus/Minus |
Query 32 YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL 235 YPQ FLCSL QSSHASSF+NTRQRDALSCLHQVVNSPRTTSHSSCI RPKPS * IHANSSHHETL Subject 2587 YPQHFLCSLWQSSHASSFQNTRQRDALSCLHQVVNSPRTTSHSSCIRRPKPSLPI*HIHANSSHHETL 2790
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 6371 to 6664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(479) | 0.0 | 94/98(96%) | 0/98(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP 324 + FHDAMNLRGCVRLAKRALVGEYMK+VRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP Subject 6371 LVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP 6664
Range 2: 6382 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 91/94(97%) | 0/94(0%) | Minus/Minus |
Query 42 GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS 323 GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLT FMYSPT ALLANLTHPRKFIAS Subject 6382 GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIAS 6663
Range 3: 6373 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 86/97(89%) | 0/97(0%) | Plus/Plus |
Query 33 SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA 323 SVS*CDEFAWM *V *EG GR IHEECEVVRGEFTTWWRQD+ASR*R+F KEEACEDCYSEH KRC Y*LGYSSQRREEG RFGSEDRELVDC*F A Subject 6373 SVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*FPA 6663
Range 4: 6377 to 6664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 84/96(88%) | 0/96(0%) | Minus/Minus |
Query 37 GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK 324 GP INNPRVRGLRYQI LLLPFSGSNSRVNI SAS VRCSNLRTLLPS+I VNETR LASTRW*IHRGQPH LHVF+DQ PLS PN STQIHRIMK Subject 6377 GPGINNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMK 6664
Range 5: 6351 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 68/85(80%) | 0/85(0%) | Plus/Plus |
Query 11 CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG 265 C ++ * FMMR*ICVD LG LRG WS NT*R+*GCPR*IHHLVEAR+RVSLT+I EGRSVRRLLQRT EAL+ILTRLFEPEKG Subject 6351 C*FVMIY*CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEKG 6605
Range 6: 6372 to 6575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 59/68(87%) | 0/68(0%) | Minus/Minus |
Query 32 YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL 235 Y QRF CSL*QSSHASSF+N RQRDA SCLHQVVNSPRTTSHSSCI RP PS* T* IHANSSHHETL Subject 6372 YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL 6575
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6
Range 1: 6371 to 6664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(479) | 0.0 | 94/98(96%) | 0/98(0%) | Plus/Plus |
Query 31 VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP 324 + FHDAMNLRGCVRLAKRALVGEYMK+VRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP Subject 6371 LVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP 6664
Range 2: 6382 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 91/94(97%) | 0/94(0%) | Minus/Minus |
Query 42 GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS 323 GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLT FMYSPT ALLANLTHPRKFIAS Subject 6382 GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIAS 6663
Range 3: 6373 to 6663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 86/97(89%) | 0/97(0%) | Plus/Plus |
Query 33 SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA 323 SVS*CDEFAWM *V *EG GR IHEECEVVRGEFTTWWRQD+ASR*R+F KEEACEDCYSEH KRC Y*LGYSSQRREEG RFGSEDRELVDC*F A Subject 6373 SVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*FPA 6663
Range 4: 6377 to 6664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 84/96(88%) | 0/96(0%) | Minus/Minus |
Query 37 GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK 324 GP INNPRVRGLRYQI LLLPFSGSNSRVNI SAS VRCSNLRTLLPS+I VNETR LASTRW*IHRGQPH LHVF+DQ PLS PN STQIHRIMK Subject 6377 GPGINNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMK 6664
Range 5: 6351 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 68/85(80%) | 0/85(0%) | Plus/Plus |
Query 11 CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG 265 C ++ * FMMR*ICVD LG LRG WS NT*R+*GCPR*IHHLVEAR+RVSLT+I EGRSVRRLLQRT EAL+ILTRLFEPEKG Subject 6351 C*FVMIY*CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEKG 6605
Range 6: 6372 to 6575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 59/68(87%) | 0/68(0%) | Minus/Minus |
Query 32 YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL 235 Y QRF CSL*QSSHASSF+N RQRDA SCLHQVVNSPRTTSHSSCI RP PS* T* IHANSSHHETL Subject 6372 YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL 6575
Nucleotide Sequence (839 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
599.9 | 2055.7 | 28% | 1.419e-169 | 49% | JQ023131.1 | |
599.9 | 2055.7 | 28% | 1.419e-169 | 49% | NC_016509.1 | |
599.9 | 2095.1 | 28% | 1.419e-169 | 46% | KU674797.1 | |
597.2 | 2077.2 | 28% | 9.543e-169 | 46% | KU674796.1 | |
308.1 | 598.9 | 11% | 1.038e-81 | 30% | JQ655295.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 10
Range 1: 2378 to 3187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
599.9 bits(1303) | 0.0 | 253/270(94%) | 0/270(0%) | Minus/Plus |
Query 1 VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 810 +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV Subject 2378 LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 3187
Range 2: 2566 to 3186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
401.5 bits(870) | 0.0 | 177/207(86%) | 0/207(0%) | Plus/Minus |
Query 2 T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM 622 T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI + Subject 2566 TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFI 3186
Range 3: 2374 to 2508 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 32/45(71%) | 0/45(0%) | Plus/Minus |
Query 680 MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH 814 M PT AL S RVSI QYV+FFAASF TLSTVI SSAV SL H Subject 2374 MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLKH 2508
Range 4: 2396 to 3187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 136/264(52%) | 0/264(0%) | Plus/Minus |
Query 1 YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL 792 +V LS+ D LYHQ Y+Q PL RQFDL+++ ++ +MR LAPRA + VLK IH+ R R+KQI VHTINE+ +*VHL E ++TIS LRYH QTMSLKR RH PR+I+RG+S + NA+RKLM+T+PV ++L+ A *L +TP++ Y+L + M +SIA+ ++S+ Y + S +FH YS A +S Q WKHQAQLEYF + LL L QF+N+*V++V+HE+N M+T R+HL +RD+LR L HAF+CH+ L Subject 2396 HVCLLSVCDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARHGVLKCSIHECRRRIKQIRVHTINEIGI*VHLSE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKHAFDCHNLFL 3187
Range 5: 2499 to 3071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 100/191(52%) | 0/191(0%) | Minus/Plus |
Query 117 LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM 689 L SW T T* F NW K RR+ KYSSCA*CFQ +*+ E A LY + WK+ E+ C L AML I +R * GV +SY A + S TG V ISFL AL L PR I RG+CR RLRDIVW *YRR LMV S +CT* SLIVCT ICL R WI LST ARGA++RM Subject 2499 LVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSDKCT*IPISLIVCTRICLIRRLHSWIEHLSTPCLARGARRRM 3071
Range 6: 2398 to 2511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 20/38(53%) | 0/38(0%) | Minus/Plus |
Query 677 GESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG 790 G+ YDS KR ER EE+HVL +G+A +*+* W HG Subject 2398 GKGYDSRKRA*ERGCEEHHVLPNGHALL*S*SASWFHG 2511
Range 7: 3102 to 3185 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 16/28(57%) | 0/28(0%) | Minus/Plus |
Query 3 RSNCLPRNSGGWS*L**YRPSRIERKLT 86 RSNCL ++SG W * **Y+ S+ ER+ T Subject 3102 RSNCLRKSSGDWL*R**YKRSQTERRHT 3185
Range 8: 2451 to 3155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 116/235(49%) | 0/235(0%) | Plus/Minus |
Query 33 VSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT* 737 VSS L+P PT ETIRP + *HA GSAR +RTQ YP+ S *AN STHDQR+ +LST * NHQ SPVS P+YVP*T ST SS + TR ++ *R EKTD N AC+ T+ + C V YS+++L*S N KHR +Q T+ FA LP V* G L S LETSSTTRIF SS L P++K LS +R+P* Q Y H A P +T* Subject 2451 VSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKTRRTQMFYPRMQTSY*ANTSTHDQRNRNLSTFV*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST* 3155
Range 9: 2542 to 3075 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 93/178(52%) | 0/178(0%) | Minus/Plus |
Query 113 GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH 646 G+S EE ++NIRVVLDVSNR D R P YT GS AK V+C RCL +F +D+K E* + T Q F V LQA L SVFS+RYR+ LV EE VD V*GT* G DTGD *WF ++Q +VLR R*SCVL+FA*+D+ + G*+ *VR +RAEP++AC+ Subject 2542 GASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQTNVLRFRFR*SCVLVFA*YDVCIRG*NI*VRRVLRAEPEDACY 3075
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 10
Range 1: 2378 to 3187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
599.9 bits(1303) | 0.0 | 253/270(94%) | 0/270(0%) | Minus/Plus |
Query 1 VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 810 +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV Subject 2378 LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 3187
Range 2: 2566 to 3186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
401.5 bits(870) | 0.0 | 177/207(86%) | 0/207(0%) | Plus/Minus |
Query 2 T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM 622 T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI + Subject 2566 TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFI 3186
Range 3: 2374 to 2508 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 32/45(71%) | 0/45(0%) | Plus/Minus |
Query 680 MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH 814 M PT AL S RVSI QYV+FFAASF TLSTVI SSAV SL H Subject 2374 MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLKH 2508
Range 4: 2396 to 3187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 136/264(52%) | 0/264(0%) | Plus/Minus |
Query 1 YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL 792 +V LS+ D LYHQ Y+Q PL RQFDL+++ ++ +MR LAPRA + VLK IH+ R R+KQI VHTINE+ +*VHL E ++TIS LRYH QTMSLKR RH PR+I+RG+S + NA+RKLM+T+PV ++L+ A *L +TP++ Y+L + M +SIA+ ++S+ Y + S +FH YS A +S Q WKHQAQLEYF + LL L QF+N+*V++V+HE+N M+T R+HL +RD+LR L HAF+CH+ L Subject 2396 HVCLLSVCDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARHGVLKCSIHECRRRIKQIRVHTINEIGI*VHLSE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKHAFDCHNLFL 3187
Range 5: 2499 to 3071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 100/191(52%) | 0/191(0%) | Minus/Plus |
Query 117 LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM 689 L SW T T* F NW K RR+ KYSSCA*CFQ +*+ E A LY + WK+ E+ C L AML I +R * GV +SY A + S TG V ISFL AL L PR I RG+CR RLRDIVW *YRR LMV S +CT* SLIVCT ICL R WI LST ARGA++RM Subject 2499 LVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSDKCT*IPISLIVCTRICLIRRLHSWIEHLSTPCLARGARRRM 3071
Range 6: 2398 to 2511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 20/38(53%) | 0/38(0%) | Minus/Plus |
Query 677 GESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG 790 G+ YDS KR ER EE+HVL +G+A +*+* W HG Subject 2398 GKGYDSRKRA*ERGCEEHHVLPNGHALL*S*SASWFHG 2511
Range 7: 3102 to 3185 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 16/28(57%) | 0/28(0%) | Minus/Plus |
Query 3 RSNCLPRNSGGWS*L**YRPSRIERKLT 86 RSNCL ++SG W * **Y+ S+ ER+ T Subject 3102 RSNCLRKSSGDWL*R**YKRSQTERRHT 3185
Range 8: 2451 to 3155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 116/235(49%) | 0/235(0%) | Plus/Minus |
Query 33 VSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT* 737 VSS L+P PT ETIRP + *HA GSAR +RTQ YP+ S *AN STHDQR+ +LST * NHQ SPVS P+YVP*T ST SS + TR ++ *R EKTD N AC+ T+ + C V YS+++L*S N KHR +Q T+ FA LP V* G L S LETSSTTRIF SS L P++K LS +R+P* Q Y H A P +T* Subject 2451 VSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKTRRTQMFYPRMQTSY*ANTSTHDQRNRNLSTFV*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST* 3155
Range 9: 2542 to 3075 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 93/178(52%) | 0/178(0%) | Minus/Plus |
Query 113 GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH 646 G+S EE ++NIRVVLDVSNR D R P YT GS AK V+C RCL +F +D+K E* + T Q F V LQA L SVFS+RYR+ LV EE VD V*GT* G DTGD *WF ++Q +VLR R*SCVL+FA*+D+ + G*+ *VR +RAEP++AC+ Subject 2542 GASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQTNVLRFRFR*SCVLVFA*YDVCIRG*NI*VRRVLRAEPEDACY 3075
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 10
Range 1: 2519 to 3328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
599.9 bits(1303) | 0.0 | 253/270(94%) | 0/270(0%) | Minus/Plus |
Query 1 VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 810 +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV Subject 2519 LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 3328
Range 2: 2707 to 3327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
403.4 bits(874) | 0.0 | 178/207(86%) | 0/207(0%) | Plus/Minus |
Query 2 T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM 622 T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI M Subject 2707 TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFM 3327
Range 3: 2515 to 2649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 31/45(69%) | 0/45(0%) | Plus/Minus |
Query 680 MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH 814 M PT AL S RVSI QYV+FFAASF TLSTV+ SSAV SL H Subject 2515 MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVMTFSSAVASLRH 2649
Range 4: 2537 to 3328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
321.4 bits(695) | 0.0 | 139/264(53%) | 0/264(0%) | Plus/Minus |
Query 1 YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL 792 +V LS+ D LYHQ Y+Q PL RQFDL+++ ++ +MR LAPRA SVLK I++ R R+KQI +HTIN++ +*VHLPE ++TIS LRYH QTMSLKR RH PR+I+RGVS + NA+RKLM+T+PV ++L+ A *L + P+K Y+L + M +SIA+ ++S+ Y V LS +FH YSKA +S Q W+HQAQLEY V LL L QFEN+*VI+V+HE+N M+T RIHL +R +LR L H F+CH L Subject 2537 HVCLLSVSDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARYSVLKCSIYERRRRIKQIRIHTINKIGI*VHLPE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMVTKPVAYILDRKSTATW*LNDVAPEKTYNLLHGMSVSIAYASDSIHYHVALSHHFHTQFWYSKAAVSGCQLYWEHQAQLEYLYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLFLKHTFDCHDLFL 3328
Range 5: 2640 to 3212 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 105/191(55%) | 0/191(0%) | Minus/Plus |
Query 117 LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM 689 L SW T MT* FSNW K RR+T +YSSCA*C Q +*+ E ALLY + WK+ ER T C L AML I +R * F G +SY A + S TG V ISFL AL LTPR I RG+CR RLRDIVW *YRR LMV SG+CT* LIVC ICL R R I LSTL+ ARGA++RM Subject 2640 LVSWLTSMT*MFSNWHKH*RRKT*RYSSCA*CSQ*S*QPETAALLYQNWVWKWCERAT**CILSEA*AMLTLIPCRRL*VFSGATSFSYQVAVLFRSSM*ATGLVTISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSGKCT*IPILLIVCIRICLIRRRRS*IEHLSTLYLARGARRRM 3212
Range 6: 2515 to 2652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 21/46(46%) | 0/46(0%) | Minus/Plus |
Query 677 VGETNNGRGESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG 814 V E G+ +DS K ER EE++VL +GYA +*+* GW HG Subject 2515 VSEARYS*GKGHDSRKCA*ERGCEEHNVLPNGYALL*S*SAGWFHG 2652
Range 7: 3243 to 3326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 16/28(57%) | 0/28(0%) | Minus/Plus |
Query 3 RSNCLPRNSGGWS*L**YRPSRIERKLT 86 RSNCL ++SG W * **Y+ S ER+ T Subject 3243 RSNCLRKSSGDWL*R**YKRSLTERRHT 3326
Range 8: 2595 to 3317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.2 bits(472) | 0.0 | 124/241(51%) | 0/241(0%) | Plus/Minus |
Query 12 SFYP*WPVSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT 734 SF * VSS L+P PT ETIRP + *HA GSAR QRTQ Y + S *AN +THDQ++ +LST A* NHQ SPVS P+YVP*T ST SS + TRR++ *R EKTD N AC+ T+ + C V S+K+L*S N KHR +Q T+ R PFA LP V**G L S L TSSTTRI C SS L P+RK LSH+R+P* QP Y H AYP +T Subject 2595 SFCQ*SLVSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKIQRTQMFYLRTPTSY*ANTNTHDQQNRNLSTFA*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDGNQACSLHTRPKKHCHLVTERRCSRKNL*SSARNECKHRLRLRQYTLSRRPFAPLPHPVLV**GCRLWLSALLGTSSTTRISLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGST 3317
Range 9: 2683 to 3216 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.6 bits(390) | 0.0 | 95/178(53%) | 0/178(0%) | Minus/Plus |
Query 113 GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH 646 G+S EE H++IRVVLDV NR D R PYYT GS AKG R V+C RCL +F +D+K F E + T Q F V LQA L SVFS+RYR+ RLV EE VD V*GT* G DTGD *WF ++QA+VLR *SCV +FA*+D+ + *+ *VRC +RAEP++AC+ Subject 2683 GTSTREERHKDIRVVLDVPNRADSQRRQPYYTRTGCGSGAKGRRDNVYCRRRRRCLHSFRAEDYKFFREQRRSVTKWQCFFGRVCRLQAWLPSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQANVLRFRFC*SCVFVFA*YDVGVRR*NI*VRCILRAEPEDACY 3216
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 10
Range 1: 2454 to 3263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
597.2 bits(1297) | 0.0 | 252/270(93%) | 0/270(0%) | Minus/Plus |
Query 1 VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 810 +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGD I+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV Subject 2454 LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDEIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV 3263
Range 2: 2642 to 3262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
398.8 bits(864) | 0.0 | 178/207(86%) | 0/207(0%) | Plus/Minus |
Query 2 T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM 622 T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVF LRA +TAYS VLST +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN***PSL*PTYSTE ALPLG+ TTLLPKKLMIF TE *ASPTPPTVY ++SPFR TSTPSSGIVR PS AVSSIGNIKHNSNI M Subject 2642 TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVF*LRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN***PSL*PTYSTEKALPLGN*TTLLPKKLMIFCTE*V*ASPTPPTVYIISSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFM 3262
Range 3: 2450 to 2584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 32/45(71%) | 0/45(0%) | Plus/Minus |
Query 680 MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH 814 M PT AL S RVSI QYV+FFAASF TLSTVI SSAV SL H Subject 2450 MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLRH 2584
Range 4: 2472 to 3263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
315.4 bits(682) | 0.0 | 139/264(53%) | 0/264(0%) | Plus/Minus |
Query 1 YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL 792 +V LS+ D LYHQ Y+Q PL RQFDL+++ ++ +MR L PRA SVLK IH+ R R+KQI VHTIN++ + VHLPE ++TIS LRYH QTMSLKR RH PR+I+RGVS + NA+RKLMIT+PV ++L+ A *L + P+K DL + M +SIA+ ++ + Y V LS +FH YS A +S Q W+HQAQLEYF V LL L QFEN+*VI+V+HE+N M+T RIHL +R +LR +L H F+CH+ L Subject 2472 HVCLLSVSDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLTPRARYSVLKCSIHERRRRIKQIRVHTINKIGIQVHLPE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMITKPVAYILDRKSTATW*LNDVAPEKTNDLLHGMSVSIAYASDCIHYLVALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLLLKHTFDCHNLFL 3263
Range 5: 2575 to 3147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.2 bits(424) | 0.0 | 105/191(55%) | 0/191(0%) | Minus/Plus |
Query 117 LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM 689 L SW T MT* FSNW K RR+T KYSSCA*C Q +*+ E A LY + WK+ ER T C AML I +RS F G +SY A + S TG VIISFL AL LTPR I RG+CR RLRDIVW *YRR LMV SG+CT LIVCT ICL R R WI LSTL+ ARG ++RM Subject 2575 LVSWLTSMT*MFSNWHKH*RRKT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERATR*CIQSEA*AMLTLIPCRRSLVFSGATSFSYQVAVLFRSSM*ATGLVIISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSGKCTWIPILLIVCTRICLIRRRRSWIEHLSTLYLARGVRRRM 3147
Range 6: 2450 to 2587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 21/46(46%) | 0/46(0%) | Minus/Plus |
Query 677 VGETNNGRGESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG 814 V E G+ YDS K E EE++VL +GYA +*+* GW HG Subject 2450 VSEARYS*GKGYDSRKCA*EGGCEEHNVLPNGYALL*S*SAGWFHG 2587
Range 7: 3178 to 3261 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 16/28(57%) | 0/28(0%) | Minus/Plus |
Query 3 RSNCLPRNSGGWS*L**YRPSRIERKLT 86 RSNCL ++SG W * **Y+ S ER+ T Subject 3178 RSNCLRKSSGDWL*R**YKRSLTERRHT 3261
Range 8: 2530 to 3252 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 123/241(51%) | 0/241(0%) | Plus/Minus |
Query 12 SFYP*WPVSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT 734 SF * VSS L+P PT ETIRP + *HA SAR QRTQ YP+ S *AN STHDQ++ + ST A* NHQ SPVS P+YVP*T ST SS + TRR++ *R EKTDDN AC+ T+ + C V S+K+ *S N KHR + T+ R PFA LP V* G L S L TSSTTRIF C SS L P+RK LSH+R+P* QP Y H AYP +T Subject 2530 SFCQ*SLVSSTLQPVPTALPETIRPCRAPHVYPR*HASSDSARKIQRTQMFYPRTPTSY*ANTSTHDQQNRNPSTFA*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDDNQACSLHTRPKKHCHLVTERRCSRKN**SSARNECKHRLRLRLYTLSRRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGST 3252
Range 9: 2618 to 3151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 95/178(53%) | 0/178(0%) | Minus/Plus |
Query 113 GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH 646 G+S EE H+NIRVVLDV NR D R P YT GS AKG R V+ RCL +F +DH F E + T Q F V LQA LSSVFS+RYR+ RLV EE VD V*GT* G DTGD *WF ++QA+VL *SCVL+FA*+D+ + G*+ *VRC +RAE ++AC+ Subject 2618 GTSTREERHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRRDNVYSRRRRRCLHSFRAEDH*FFREQRRSVTKWQCFFGRVCRLQAWLSSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQANVLGFRFC*SCVLVFA*YDVGVRG*NI*VRCILRAESEDACY 3151
Grapevine leafroll associated virus 3 isolate GH11, complete genome
Sequence ID: JQ655295.1 Length: 18671 Number of Matches: 6
Range 1: 2385 to 3182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
308.1 bits(666) | 0.0 | 125/266(47%) | 0/266(0%) | Minus/Plus |
Query 7 LTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA 804 L+TA + ++ A+K+++YC M+++ C+H+A GFMVDVYD+ ++A+A++ K +F+L LMFPIEL +G + + EL V R+G+ + Y VG G+ Y HS +K+ FF + +++ SG+AY +EY GYR GYH F++C A S R + TF G S+V +P + +SF+ + LDSDFVDRVYSY LNT TF +RTFEYAV RSQKTHVI G+RVVH+KVE+SP++ W LVV++M QAI DR K+ Subject 2385 LSTAGGESFVSSDLLTEAASKSVSYCSMESQRCKHRADAGFMVDVYDMSPRQVAEAMDLKGCLVFDLALMFPIELLYGNGEVCLEELDTLVKREGERLTYNVGQCGEVYEHSYTKVSGFFTNAYIRVSSGAAYKLEYEGYRCGYHHFTMCRAQKAQGSETTQRSLVPTFVGKSVVFLPIVEGTSVSFKSIVLDSDFVDRVYSYALNTIGTFENRTFEYAVGAVRSQKTHVITGSRVVHNKVEVSPDDMWALVVSIMAQAIKDRAKS 3182
Range 2: 2885 to 3178 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 50/98(51%) | 0/98(0%) | Plus/Minus |
Query 11 FFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNV 304 F LS MA + TT+ H SSG+ STL CTTR+P +TCVF TAYSKVL +KV +VL YE T STKSES+ I L + G T P NV Subject 2885 FALSFMA*AMMETTNAHMSSGETSTLLCTTRLPVITCVFCDLTAPTAYSKVLFSKVPIVLRAYE*TLSTKSESRTIDLKLTLVPSTIGKKTTDLPTNV 3178
Range 3: 2579 to 2818 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 33/80(41%) | 0/80(0%) | Plus/Minus |
Query 371 **PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNS 610 **P L*P+YS+ A P + KK + EC+* SP PT+Y SP T SS P SSIGNI+ S Subject 2579 **PHL*PSYSSLYAAPDETRMYAFVKKPLTLV*ECS*TSPHWPTLYVRRSPSLFTKVSSSSKQTSPFPYRSSIGNIRAKS 2818
Range 4: 2958 to 3161 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 29/68(43%) | 0/68(0%) | Plus/Minus |
Query 28 GLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV* 231 GL H D P +GR FD IMY+A S +MRFL P +SVLKS + + V+ I ++ I+++R+* Subject 2958 GLSHDGDD*RPHVIGRNFDFIMYNATSRDNMRFLRPYRSHSVLKSSVFESTNCVESIRINPIDKIRI* 3161
Range 5: 2454 to 2621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 17/56(30%) | 0/56(0%) | Plus/Minus |
Query 568 ISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIR 735 I ++F+W+H++ +E L + S +++V H+ + MLT R H TIR Subject 2454 IPIQKFNWEHKS*IENQTPLKIHRFSNLSGRHIVDVHHKPSVGSMLTSLRFHRTIR 2621
Range 6: 2935 to 3171 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 29/79(37%) | 0/79(0%) | Plus/Minus |
Query 18 YP*WPVSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTR 254 YP W R PT RE +R Y+V+R F *HAF + + QRTQK ++ + C* + + +++P+L S *+ R Subject 2935 YPLWLEP*WRRLTPTCHREKLRLYYVQRDFP**HAFSATLPLPQRTQKFCFRKYQLC*EHTNKPYRQNPNLGRSI*S*R 3171
Nucleotide Sequence (489 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
109.7 | 344.1 | 22% | 4.155e-32 | 37% | JQ023131.1 | |
109.7 | 344.1 | 22% | 4.155e-32 | 37% | NC_016509.1 | |
96.7 | 545.8 | 33% | 2.264e-30 | 34% | KU674797.1 | |
96.7 | 281.5 | 16% | 3.133e-22 | 41% | KT000364.1 | |
100.3 | 551.1 | 30% | 3.055e-32 | 41% | KU674796.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6
Range 1: 5201 to 5407 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(238) | 0.0 | 44/69(64%) | 0/69(0%) | Minus/Plus |
Query 131 IAPARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS 337 + P + E ++V + ++EKF GAR+L+S DIFVDKLRGRDVAFYSKYSRRY YNGGSH SQGW+K+ Subject 5201 VTPVKVEVSAPRNVQTAMEREKFKGARKLVSSDIFVDKLRGRDVAFYSKYSRRYVYNGGSHASQGWNKA 5407
Range 2: 5051 to 5155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.3 bits(110) | 0.0 | 21/35(60%) | 0/35(0%) | Minus/Plus |
Query 383 DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE 487 +EESE YLC+S + E G ASPSGCK+AD +S +E Subject 5051 EEESEGYLCLSSTKVERGDASPSGCKSADCKSISE 5155
Range 3: 5237 to 5422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 28/62(45%) | 0/62(0%) | Plus/Minus |
Query 116 PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLRFSNI 301 P+LI +P LT VRT+II +PS +LAV+ ++P ID+N+A +* AG + F L R N+ Subject 5237 PKLIKRFIPTLTRVRTTIIDIPSAVLAVECYISPPQLIDENVAAH*FAGPFEFFTLHRRLNV 5422
Range 4: 5058 to 5153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 16/32(50%) | 0/32(0%) | Plus/Minus |
Query 385 PLYSYHPRSYNHWATRRRLLL**G*RTDNFHS 480 P+YS + R+YNHWA RR L * TD+ S Subject 5058 PIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRS 5153
Range 5: 5217 to 5426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 26/70(37%) | 0/70(0%) | Plus/Minus |
Query 112 PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIFQHLAIEALR 321 P AH Y+ D RAN HY TF TCC+ + YR+K R L G L F + + F+ LR Subject 5217 PPEAHQALYSNPDSRANHHYRHTFGCTCCRMLHLSPATYRRKCRCSLVCGPL*IFHAPSPFERFGELTLR 5426
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 6
Range 1: 5201 to 5407 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(238) | 0.0 | 44/69(64%) | 0/69(0%) | Minus/Plus |
Query 131 IAPARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS 337 + P + E ++V + ++EKF GAR+L+S DIFVDKLRGRDVAFYSKYSRRY YNGGSH SQGW+K+ Subject 5201 VTPVKVEVSAPRNVQTAMEREKFKGARKLVSSDIFVDKLRGRDVAFYSKYSRRYVYNGGSHASQGWNKA 5407
Range 2: 5051 to 5155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.3 bits(110) | 0.0 | 21/35(60%) | 0/35(0%) | Minus/Plus |
Query 383 DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE 487 +EESE YLC+S + E G ASPSGCK+AD +S +E Subject 5051 EEESEGYLCLSSTKVERGDASPSGCKSADCKSISE 5155
Range 3: 5237 to 5422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 28/62(45%) | 0/62(0%) | Plus/Minus |
Query 116 PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLRFSNI 301 P+LI +P LT VRT+II +PS +LAV+ ++P ID+N+A +* AG + F L R N+ Subject 5237 PKLIKRFIPTLTRVRTTIIDIPSAVLAVECYISPPQLIDENVAAH*FAGPFEFFTLHRRLNV 5422
Range 4: 5058 to 5153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 16/32(50%) | 0/32(0%) | Plus/Minus |
Query 385 PLYSYHPRSYNHWATRRRLLL**G*RTDNFHS 480 P+YS + R+YNHWA RR L * TD+ S Subject 5058 PIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRS 5153
Range 5: 5217 to 5426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 26/70(37%) | 0/70(0%) | Plus/Minus |
Query 112 PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIFQHLAIEALR 321 P AH Y+ D RAN HY TF TCC+ + YR+K R L G L F + + F+ LR Subject 5217 PPEAHQALYSNPDSRANHHYRHTFGCTCCRMLHLSPATYRRKCRCSLVCGPL*IFHAPSPFERFGELTLR 5426
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 12
Range 1: 5348 to 5548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.7 bits(209) | 0.0 | 39/67(58%) | 0/67(0%) | Minus/Plus |
Query 131 PARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS 331 P + EE ++D + + E+F GAR+L+ DIFVDKLRGR+VAF+SK SR Y YNGGSH SQGW+K+ Subject 5348 PVKVEESATRDAQTATEPERFKGARKLVCSDIFVDKLRGREVAFFSKCSRGYVYNGGSHASQGWNKA 5548
Range 2: 5192 to 5296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.5 bits(126) | 0.0 | 24/35(69%) | 0/35(0%) | Minus/Plus |
Query 383 DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE 487 DEE+ESYLC+S +AE G ASPSGCK+ADG+S E Subject 5192 DEENESYLCLSSTKAERGDASPSGCKSADGKSVPE 5296
Range 3: 5401 to 5544 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 32/48(67%) | 0/48(0%) | Plus/Minus |
Query 135 LCHP*LTCEPPXXXXXXXXXXXNATSRPLNLSTKISPDISSRAPRNFS 278 L P*L CEPPL*+Y RL+LL NATS P NLSTK+S S RAP N S Subject 5401 LFQP*LACEPPL*TYPRLHLLKNATSLPRNLSTKMSLHTSLRAPLNLS 5544
Range 4: 5193 to 5294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 17/34(50%) | 0/34(0%) | Plus/Minus |
Query 385 PLYSYHPRSYNHWATRRRLLL**G*RTDNFHSPH 486 P++S+H R+YNHWA RR + L TD+F S H Subject 5193 PVHSFHQRTYNHWAKRRHVPLWWSLSTDSFRSLH 5294
Range 5: 5390 to 5563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 26/58(45%) | 0/58(0%) | Plus/Minus |
Query 116 PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLR 289 P+LI +P LT VRT+II V S LA + +P ID+N+A +* AG + F L R Subject 5390 PKLIKRFVPTLTRVRTTIIDVSSAALAEECYFSPPQLIDENVAAH*FAGPFESFRLRR 5563
Range 6: 5192 to 5305 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 20/38(53%) | 0/38(0%) | Plus/Minus |
Query 374 RVPFRSTPTIRGLTTTGRRAAAFCSDRANAQITFTLLI 487 R R T +I GLTTTGR A F A AQI F L I Subject 5192 RTFLRYTLSISGLTTTGRSVATFRFGGA*AQIAFVLFI 5305
Range 7: 5358 to 5567 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 24/70(34%) | 0/70(0%) | Plus/Minus |
Query 112 PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIFQHLAIEALR 321 P AH + D RAN HY R TC + + YR+K R L G L F + + F+ L LR Subject 5358 PPEAHQALCSNPDSRANHHYRRILGCTC*RMLLLSPATYRRKCRCTLVCGPL*IFQAPSPFERLG*LTLR 5567
Range 8: 5191 to 5256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 15/22(68%) | 0/22(0%) | Plus/Minus |
Query 423 GDAPPPSALIGLTHR*LSLSSS 488 G+A P SAL+ L HR*LS SSS Subject 5191 GEASPRSALVELKHR*LSFSSS 5256
Range 9: 5210 to 5287 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(99) | 0.0 | 18/26(69%) | 0/26(0%) | Minus/Plus |
Query 2 YLCVSPIRAEGGGASPSGCKTADGRS 79 YLC+S +AE G ASPSGCK+ADG+S Subject 5210 YLCLSSTKAERGDASPSGCKSADGKS 5287
Range 10: 5175 to 5219 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 9/15(60%) | 0/15(0%) | Minus/Plus |
Query 70 GRMKFPMRRVKVICA 114 GRM M+R K ICA Subject 5175 GRMTIRMKRTKAICA 5219
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6
Range 1: 1416 to 1622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.7 bits(209) | 0.0 | 40/69(58%) | 0/69(0%) | Minus/Plus |
Query 131 IAPARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS 337 + P + E + K+EKF GAR+L+ DIFVDKLRGR+VAFYSK SR Y YNGGSH SQGW+K+ Subject 1416 VTPVKIEVSXXXXXQTAMKREKFKGARKLVCSDIFVDKLRGREVAFYSKCSRSYVYNGGSHASQGWNKA 1622
Range 2: 1323 to 1370 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.1 bits(65) | 0.0 | 12/16(75%) | 0/16(0%) | Minus/Plus |
Query 383 ASPSGCKTADGRSRAE 430 ASPSGCK+ADG+S +E Subject 1323 ASPSGCKSADGKSISE 1370
Range 3: 1459 to 1641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 25/61(41%) | 0/61(0%) | Plus/Minus |
Query 112 PSSAHLGTYATLDLRANLHYSRTFDYTCCKTRRHALLIYRQKYRQILARGHLETFLSSAIF 294 P AH Y+ D RAN HY R F TCC+ + YR+K R L G L F +S+ F Subject 1459 PLEAHQALYSNPDSRANHHYRRNFGCTCCRMLLLSPATYRRKCRCTLVCGPL*IFHASSPF 1641
Range 4: 1321 to 1365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 10/15(67%) | 0/15(0%) | Plus/Minus |
Query 388 LYSYHPRSYNHWATR 432 +YS+H R+YNHWA R Subject 1321 IYSFHQRTYNHWAKR 1365
Range 5: 1464 to 1634 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 26/57(46%) | 0/57(0%) | Plus/Minus |
Query 119 QLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLR 289 +LI +P LT VRT+II V S LAV+ +P ID+N+A +* AG + F L R Subject 1464 KLIKRFIPTLTRVRTTIIDVTSAALAVECYFSPPQLIDENVAAH*FAGPFEFFTLHR 1634
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 12
Range 1: 5283 to 5483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.3 bits(217) | 0.0 | 40/67(60%) | 0/67(0%) | Minus/Plus |
Query 131 PARNEELLSQDVGKSQKKEKFLGARELISGDIFVDKLRGRDVAFYSKYSRRYDYNGGSHVSQGWHKS 331 P + E ++D ++++EKF GAR+L+ DIFVDKLRGR+VAF+SK SRRY YNGGSH SQGW+K+ Subject 5283 PVKVEVSATRDAQTAKEREKFKGARKLVCSDIFVDKLRGREVAFFSKCSRRYVYNGGSHASQGWNKA 5483
Range 2: 5127 to 5231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.2 bits(132) | 0.0 | 25/35(71%) | 0/35(0%) | Minus/Plus |
Query 383 DEESESYLCVSPIRAEGGGASPSGCKTADGRSRAE 487 DEESE YLC+S I+AE G ASPSGCK+ADG+S +E Subject 5127 DEESEDYLCLSSIKAERGDASPSGCKSADGKSVSE 5231
Range 3: 5336 to 5479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 34/48(71%) | 0/48(0%) | Plus/Minus |
Query 135 LCHP*LTCEPPXXXXXXXXXXXNATSRPLNLSTKISPDISSRAPRNFS 278 L P*L CEPPL*+YLRL+LL NATS P NLSTK+S S RAP NFS Subject 5336 LFQP*LACEPPL*TYLRLHLLKNATSLPRNLSTKMSLHTSLRAPLNFS 5479
Range 4: 5134 to 5229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 16/32(50%) | 0/32(0%) | Plus/Minus |
Query 385 PLYSYHPRSYNHWATRRRLLL**G*RTDNFHS 480 P++S+H R+YNHWA RR + L* TD+ S Subject 5134 PIHSFHQRTYNHWAKRRHVPL*WSLSTDSLRS 5229
Range 5: 5325 to 5498 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 27/58(47%) | 0/58(0%) | Plus/Minus |
Query 116 PQLI*GLMPPLTYVRTSIIVVPSTILAVKRDVTPS*FIDKNIARY*LAGT*KLFFLLR 289 P+LI +P LT VRT+II V S LA + + ID+N+A Y* AG + F LLR Subject 5325 PKLIKRFVPTLTRVRTTIIDVSSAALAEECYFSSPQLIDENVAAY*FAGPFEFFTLLR 5498
Range 6: 5127 to 5228 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 19/34(56%) | 0/34(0%) | Plus/Minus |
Query 386 RSTPTIRGLTTTGRRAAAFCSDRANAQITFTLLI 487 R T +I GLTTTGR A F D A AQI F L + Subject 5127 RYTLSISGLTTTGRSVATFRFDGA*AQIVFALFV 5228
Range 7: 5419 to 5502 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 13/28(46%) | 0/28(0%) | Plus/Minus |
Query 112 PSSAHLGTYATLDLRANLHYSRTFDYTC 195 P AH + D RAN HY R F TC Subject 5419 PPEAHQALCSNPDSRANHHYRRIFGCTC 5502
Range 8: 5126 to 5191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 15/22(68%) | 0/22(0%) | Plus/Minus |
Query 423 GDAPPPSALIGLTHR*LSLSSS 488 G+A P SAL+ L HR* SLSSS Subject 5126 GEASPRSALMELKHR*SSLSSS 5191
Range 9: 5293 to 5388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 14/32(44%) | 0/32(0%) | Plus/Minus |
Query 226 YRQKYRQILARGHLETFLSSAIFQHLAIEALR 321 YR+K R IL G L F + + F+HL LR Subject 5293 YRRKCRCILVCGPL*IFHAPSPFEHLG*LTLR 5388
Range 10: 5294 to 5467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 24/58(41%) | 0/58(0%) | Minus/Plus |
Query 147 RRASIARCWKIAEERKVSRCPRANIWRYFCR*IKRA*RRVLQQV*SKVRL*WRFARKS 320 R S RC K+ R P+ ++ R+F R*+ +LQQV K+RL*W FAR+S Subject 5294 RSVSYPRCSNGEGA*KIQRGPQTSMQRHFRR*VAGKRSSILQQVQPKIRL*WWFARES 5467
Nucleotide Sequence (909 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
604.1 | 2920.0 | 34% | 9.02e-171 | 69% | AF195822.1 | |
566.0 | 2224.1 | 39% | 2.534e-159 | 50% | JQ023131.1 | |
566.0 | 2224.1 | 39% | 2.534e-159 | 50% | NC_016509.1 | |
596.7 | 2735.8 | 33% | 1.453e-168 | 60% | KU674797.1 | |
589.4 | 2716.1 | 33% | 2.34e-166 | 59% | KU674796.1 |
Alignments
Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds
Sequence ID: AF195822.1 Length: 12394 Number of Matches: 14
Range 1: 7809 to 8711 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
604.1 bits(1312) | 0.0 | 261/301(87%) | 0/301(0%) | Plus/Plus |
Query 3 VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP 905 VM*+ARF*G LA+ +CNI R*LTMATALVAPIVGDKGE LALLRNLPNDES DSWLPNAGRMNDDF RVGEAYRLQNLSIGYTINVSV+IKS+PKETMGVLRVVIEPRDGDI+IHTIRFYRDKNLIEQ+YTQRKGGVS VLKSRPVDASIVNFHSERNEKMTS+VNKQTRLMEVQTNGSSLGTSQ+KVPV+SLITVLVSLESKK+SCD L +IPTEV SII+FDGT+DYK+I R RKYIFPYKTFRDSKY E L EAIAA NETAATQPETE PAHPT +V YVTPPEGV ITN ATP Subject 7809 VM*QARF*GILASLRCNIVLR*LTMATALVAPIVGDKGEYLALLRNLPNDESLDSWLPNAGRMNDDFSRVGEAYRLQNLSIGYTINVSVSIKSIPKETMGVLRVVIEPRDGDILIHTIRFYRDKNLIEQVYTQRKGGVSSVLKSRPVDASIVNFHSERNEKMTSMVNKQTRLMEVQTNGSSLGTSQIKVPVESLITVLVSLESKKVSCDTLSGMIPTEVSSIIRFDGTIDYKDIDRERKYIFPYKTFRDSKYREFLTEAIAALNETAATQPETEAIPAHPTTNVTYVTPPEGVAITNVATP 8711
Range 2: 8249 to 8710 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.3 bits(612) | 0.0 | 128/154(83%) | 0/154(0%) | Minus/Minus |
Query 443 GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDAS 904 GVA LVI TPSGGVT*+T VGCAG+ SVSG VAAVSF AAIAS NS+YFESLKVLYGK+YFR+R+ISL*S VPSN IIE TSVGI +S+SHD FFDSNDTKTVIKLSTGTL WLVPKLEPFV TSINLVCL TIEVIFSFLSL*KFTIDAS Subject 8249 GVATLVIATPSGGVT*VTFVVGCAGIASVSG*VAAVSFSAAIASVKNSRYFESLKVLYGKIYFRSRSISL*SIVPSNLIIELTSVGIIPESVSHDTFFDSNDTKTVIKLSTGTLIWLVPKLEPFVWTSINLVCLLTIEVIFSFLSL*KFTIDAS 8710
Range 3: 7808 to 8203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.1 bits(570) | 0.0 | 116/132(88%) | 0/132(0%) | Minus/Minus |
Query 2 V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT 397 V* CSIKFLSR*NLIVC+ MSPSRGSITTLSTPIVSLG DLI T+TLIV*PIERFCNLYASPTL+KSSFIRPALGSQES DSSFGKFLNKAK+SPLSPTIGATNAVAIVNHR +ILH + AS+PQNRA HIT Subject 7808 V*TCSIKFLSR*NLIVCIRMSPSRGSITTLSTPIVSLGIDLIETETLIV*PIERFCNLYASPTLEKSSFIRPALGSQESRDSSFGKFLNKAKYSPLSPTIGATNAVAIVNHRSTILHLKLASIPQNRACHIT 8203
Range 4: 8246 to 8710 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 113/155(73%) | 0/155(0%) | Plus/Plus |
Query 440 GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP 904 GGCVNCEFSQ*KK*KNDFD QAD +NGS +EW LRN*P+QSPC*+FDYCLSIVRIEE+++ TL DTN*S+FDNKV* D *L G SR KV+FSV*DF*RFK+ GV DR TK N RD+A NRSYTGASD RNLCDTTRG YN* YP Subject 8246 GGCVNCEFSQ*KK*KNDFDG*QAD*INGSPDEWFKLRN*PNQSPC*KFDYCLSIVRIEESIVRYTLWNDTN*SKFDNKV*WDY*LQGYRSRTKVYFSV*DF*RFKISGVFNRGDRGTKRNCRDSARNRSYTGASDNERNLCDTTRGSGYN*CGYP 8710
Range 5: 7808 to 8107 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 86/100(86%) | 0/100(0%) | Plus/Plus |
Query 2 SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG 301 SNVTSSVLRNTSELKV*Y TAVINNG+ VSGSYCWR*G VFGFIEKL E*R+PRFLAP*R S E RFLQSGRS+*VTKSFDRLHN*C R D*+ SQRNDG Subject 7808 SNVTSSVLRNTSELKV*YCTAVINNGDCVSGSYCWR*GRVFGFIEKLAE*RVPRFLAP*RGSYERRFLQSGRSI*VTKSFDRLHN*CFRLD*VNSQRNDG 8107
Range 6: 8156 to 8206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 13/17(76%) | 0/17(0%) | Plus/Plus |
Query 350 HYKILS*QEFNRTNLHS 400 HYK+LS QEFNR +LHS Subject 8156 HYKVLSRQEFNRASLHS 8206
Range 7: 7809 to 8537 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
398.3 bits(863) | 0.0 | 188/243(77%) | 0/243(0%) | Minus/Minus |
Query 3 RKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY 731 RKN+LS A L+INSP+K YYRTYFSWY E I +FLRF*RY*DSNQT NRDFDLASS*A IRL FH* LLV++RSHFFISFTVKIHN*RIHRSTFE+T D SFSLSVDL Y*ILV IE YSVY +V+VS YYYSKHAHRFFG * NRDG INCVTYRKIL*PI FSHS EIV+H+T VREPRI G VIR VSQ*SQ L LISNNRSH*R HC*SP +NIT * R* SSEPS SHY Subject 7809 RKNILSFAIDILVINSPIKPYYRTYFSWYHSRECIARYFLRF*RY*DSNQTFNRDFDLASS*A*TIRLDFH*SSLLVNHRSHFFISFTVKIHN*RIHRSTFEHTTDTSFSLSVDLLY*ILVAIEPYSVYKNVSVSRFYYYSKHAHRFFGN*LNRDGNINCVTYRKIL*PICFSHSGEIVVHTTRVREPRIEGLVIRQVSQ*SQILSLISNNRSH*RSRHC*SPQYNITP*AR*YSSEPSLSHY 8537
Range 8: 8583 to 8708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 29/42(69%) | 0/42(0%) | Minus/Minus |
Query 777 GSCVSYSHTLWWCHIDYVXXXXXXXXXXXXXXRGGFISCGDR 902 GS +SYSH+LWWCHI YVR RMRR +FCF L RG F+ C DR Subject 8583 GSHISYSHSLWWCHISYVRCRMRRYSFCFGLSRGSFV*CRDR 8708
Range 9: 8158 to 8712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.7 bits(604) | 0.0 | 135/185(73%) | 0/185(0%) | Minus/Minus |
Query 352 KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL* 906 +G* *L* PLVVSH+LR SDAPV*LLF+A SR+F V RS L TP+ LNL*KSYTEK TF R+ +P NQ S QTLLSNLLQLVS +RVY SSILTILRQ*SN QQGL* G*FLS +HS LPL SAC SKSFFHFFHCENSQLTHPPVYF* H * LLFFECR LLNSC DR L* Subject 8158 RG*PH*L*PLPLVVSHKLRSLSDAPV*LLFRAESRQFRLVPRSPRLKTPDILNL*KSYTEKYTFVRDRYPCNQ*SHQTLLSNLLQLVSFQRVYRTILSSILTILRQ*SNFQQGL*FG*FLSLNHSSGLPLI*SAC*PSKSFFHFFHCENSQLTHPPVYF*AHY*HLLFFECRLALLNSCRDRTL* 8712
Range 10: 7927 to 8109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 51/61(84%) | 0/61(0%) | Minus/Minus |
Query 121 RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN 303 RPSFLWE+ *SRR H*LCNLSKDFVTY LLPL RNR S+D R*GAKNRG RHS SFSIKPN Subject 7927 RPSFLWELT*SRRKH*LCNLSKDFVTYMLLPLWRNRRSYDPR*GAKNRGTRHSASFSIKPN 8109
Range 11: 7807 to 7875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 23/23(100%) | 0/23(0%) | Minus/Minus |
Query 1 ITAVQYYTLSSLVFLRTELVTLL 69 ITAVQYYTLSSLVFLRTELVTLL Subject 7807 ITAVQYYTLSSLVFLRTELVTLL 7875
Range 12: 7912 to 8343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.7 bits(519) | 0.0 | 114/144(79%) | 0/144(0%) | Plus/Plus |
Query 106 EIRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM 537 EIR S+WLY*ET RMT+P ILGSLT V * TIS EWEK IGYKIFR*VTQLM+PSRL+ FPKKRWACLE***+ ET T YTL* SI TRI**+KSTLKEKE S V SKVDRWMRQL*IFTVKEMKK*LR TSR *WK +RM Subject 7912 EIRESIWLY*ETCRMTSPSILGSLTRVV*TTISPEWEKHIGYKIFR*VTQLMFPSRLSQFPKKRWACLE***NRETETFLYTL*GSIATRI**SKSTLKEKEVSVVCSKVDRWMRQL*IFTVKEMKK*LRWLTSRLD*WKSRRM 8343
Range 13: 8404 to 8709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 71/102(70%) | 0/102(0%) | Plus/Plus |
Query 598 YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLP 903 YR*NRRK I+S *YQLK*VR** L GLLI R A ES FFRIRLLEIQ+IGS+* +RS H K PR S KQKL+RRIR+RT* M*HHQR L*L LP Subject 8404 YR*NRRKYRAIHSLE*YQLK*VR**GLMGLLITRISIANESIFFRIRLLEIQNIGSF*PRRSRH*TKLPRLSPKQKLYRRIRQRT*LM*HHQREWL*LMWLP 8709
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 12
Range 1: 13965 to 14867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
566.0 bits(1229) | 0.0 | 237/301(79%) | 0/301(0%) | Plus/Plus |
Query 3 VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP 905 VM*+A++* T +S+C + *L M TALVAPIVGDKGE L+LLRNLPND S +SWLPNAGRMNDDFF++GEAY+LQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGD++IHT+RFYRDKNLIEQ+YTQRKGGV VLKSRPVD+SIVNFH+ER E MTS+VNKQ RLMEV TNGSSLG+SQ+KVPVDSLITV+VSLESKK+SCD L EL+P +VGSI+KFDGTVDYKEI R RKYIFPYKTFRDSKY E+L EAIAARNETAA QPETE P HP A+V YVTPPEGV+ITN A P Subject 13965 VM*QAQY*ETPVSSRCRFRKL*LIMTTALVAPIVGDKGEYLSLLRNLPNDNSQESWLPNAGRMNDDFFKIGEAYKLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDMLIHTLRFYRDKNLIEQVYTQRKGGVGSVLKSRPVDSSIVNFHNERKETMTSMVNKQNRLMEVFTNGSSLGSSQIKVPVDSLITVIVSLESKKVSCDGLSELVPNDVGSIVKFDGTVDYKEINRERKYIFPYKTFRDSKYREILTEAIAARNETAAAQPETETVPVHPIANVTYVTPPEGVSITNAAIP 14867
Range 2: 13964 to 14866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
463.4 bits(1005) | 0.0 | 227/301(75%) | 0/301(0%) | Minus/Minus |
Query 2 GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDASXXXXXXXXXXXXXX*V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT 904 G+A VI TPSGGVT*+T A+GC G SVSG AAVSFRAAIAS S+YFESL VLYGK+YFR+R ISL*STVPSNF IEPTS G NS+S SH+ FFDSN+T TVIKLSTGTL WL PKLEPFV TSINL CL TIEVI SFLSL*KFTID STGLLL T TPPFL V* CSIKFLSR*NL VC+++SPSRGSI TLSTPIVS G DLI TDTLIV PIERFCNLYASP LKKSSFIRPALGSQ+S + SFGKFL+K K+SPLSPTIGATNAV I+NH LH E V A +IT Subject 13964 GIAAFVIDTPSGGVT*VTFAIGCTGTVSVSG*AAAVSFRAAIASVKISRYFESLNVLYGKIYFRSRFISL*STVPSNFTIEPTSFGTNSESPSHETFFDSNETITVIKLSTGTLIWLDPKLEPFVKTSINLFCLLTIEVIVSFLSL*KFTIDESTGLLLRTLPTPPFLCV*TCSIKFLSR*NLRVCISISPSRGSIITLSTPIVSFGIDLIETDTLIVYPIERFCNLYASPILKKSSFIRPALGSQDSWELSFGKFLSKDKYSPLSPTIGATNAVVIINHSFLNLHLELTGVS*Y*ACYIT 14866
Range 3: 13965 to 14759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.5 bits(643) | 0.0 | 155/265(58%) | 0/265(0%) | Minus/Minus |
Query 3 FISCGDRFI*XXXXXXXXXXXIRKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY 797 F+SC +RF * LP+ I K LIRK++L A YFL+I+ V+ + R + YQF E I *+FL *R +S+QTV+ DFDLA S* RAIR FH*P LL+++ H F SF +KI++*RIHRSTFE T DA+FSL VDLF *+LVTIES SVY +TV W YYYSKHAHRFF FNR+ YIN V YRKIL* IR S+ +EI+IH T VREPR G +IR VSQ* Q L I N RSH*R CH *S L T * C S HY Subject 13965 FVSCSNRFG*DLPVFRIPKRLIRKDILPFAIYFLVIDRSVEFHNRAHVVRYQFGESIA*NFL*L*RNYNSDQTVDWDFDLARS*TRAIRKDFH*PILLINH*GHSFFSFIMKIYD*RIHRSTFENTTDATFSLRVDLFN*VLVTIES*SVYKHITVPWFYYYSKHAHRFFWDRFNRNRYINRVPYRKIL*LIRLSYFKEIIIHPTRVREPRFLGIIIRQVSQ*RQILAFIPNYRSH*RRCHY*SQLSKSTP*AHWCFLVLSLLHY 14759
Range 4: 14811 to 14867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 10/19(53%) | 0/19(0%) | Minus/Minus |
Query 849 RGSCVSYSHTLWWCHIDYV 905 R SC+ Y +TLWW +I +V Subject 14811 RDSCICYRYTLWWSYIGHV 14867
Range 5: 14317 to 14868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.2 bits(400) | 0.0 | 101/184(55%) | 0/184(0%) | Minus/Minus |
Query 355 KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL 906 +G*L L HPLV HR R SDAP LFQA F FV++SL L +P N * SYTE+ T R+LFP N+ R+ S+ + V IRRV+ M S LT L Q*SNC+ GL* G L+*SHS LPLT+SA +S F FFH EN +LT+PPVYF* H R LFF CR V L+SCHDRIL Subject 14317 QG*LHLLSIHPLVELHRSRSRSDAPELSLFQAEPPLFRFVQQSLRLRSPGISNP*TSYTERYTSVRDLFPCNRPFRRISQSSPRRSVPIRRVHRMKLSLTLTKL*Q*SNCRLGL*FGSILN*SHS*RLPLTYSAY*PLRS*FLFFHYENLRLTNPPVYF*EHYRRHLFFACRPVQLSSCHDRIL 14868
Range 6: 14083 to 14265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 41/61(67%) | 0/61(0%) | Minus/Minus |
Query 121 RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN 303 RPSFL I*S++IH* C LSKDFVTYT L *RN HS D R*GAK G HS SFS+K N Subject 14083 RPSFLLGSI*SKQIH*SCTLSKDFVTYTPLLF*RNHHSSDPR*GAKILGNYHSASFSVKTN 14265
Range 7: 13963 to 14031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 19/23(83%) | 0/23(0%) | Minus/Minus |
Query 1 ITAVQYYTLSSLVFLRTELVTLL 69 ITA YTLSSLVFL TELVTLL Subject 13963 ITAF*IYTLSSLVFLSTELVTLL 14031
Range 8: 13964 to 14263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 72/100(72%) | 0/100(0%) | Plus/Plus |
Query 2 SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG 301 SNVTSSVLRNTSELKV* * AVINN N VSGSY W * VF F EKL E* PR LAP*R S+E* FL + R V*VTKSFDR+H+*CI D*I +RNDG Subject 13964 SNVTSSVLRNTSELKV*I*KAVINNDNGVSGSYSWG*RRVFVFTEKLAE**FPRILAP*RGSDE**FL*NRRGV*VTKSFDRVHD*CICFD*IDPKRNDG 14263
Range 9: 14402 to 14866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 77/155(50%) | 0/155(0%) | Plus/Plus |
Query 440 GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP 904 GG VN +FS *KK D + A+ VNGS EWL* R P+QSP QFD+C S VR++E+ M TLRI T D ++ R+ L GN SR +V+ SV*D * F++ G + SD TK N +A*NR +GASD R+LC++TRGC N SYP Subject 14402 GGFVNRKFS**KKRNYDLNG**AE*VNGSLYEWL*FRIEPNQSPSRQFDHCYSFVRVKESFMRWTLRIGTERRGLDCEIRRNGRLQGNKSRTEVYLSV*DV*GFEIPGDLNRSDCCTKRNSGGSA*NRDSSGASDRERDLCNSTRGCIDNKCSYP 14866
Range 10: 14312 to 14362 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 12/17(71%) | 0/17(0%) | Plus/Plus |
Query 350 HYKILS*QEFNRTNLHS 400 H KILS*QE N T LH+ Subject 14312 HSKILS*QELN*TGLHA 14362
Range 11: 14071 to 14499 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 93/143(65%) | 0/143(0%) | Plus/Plus |
Query 109 IRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM 537 I+ S+ LY*ET RM P LGSLT V *M IS + E+RI YKIFR* T+LMY RLN KKRWACLE***+H TV YTL*DSIVTR * N+ST KEK AS V+SKVDRW+RQ *IF +KE K * + SR G*WK RM Subject 14071 IKASICLY*ETCRMIIPKNLGSLTRVG*MMISLK*ERRISYKIFR*GTRLMYLFRLNRSQKKRWACLE***NHGTVICLYTL*DSIVTRT*LNRSTRKEKVASVVFSKVDRWIRQS*IFIMKEKKL*PQWLISRIG*WKSLRM 14499
Range 12: 14560 to 14868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 51/103(50%) | 0/103(0%) | Plus/Plus |
Query 598 YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL 906 +R*++RK H ++S N Y+ R *+ T I RK* A S FRIR L I++ G * KR HE K R SLKQ+ R IR RT* M* HQRV * QL L Subject 14560 FR*SQRKFHAMDSPNWYRTTWARL*NSTERSITRK*IANGSISFRIRRLGIRNTGRS*PKRLLHETKQRRLSLKQRQFRCIRSRT*PM*LHQRVYR*QMQLSL 14868
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 12
Range 1: 13965 to 14867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
566.0 bits(1229) | 0.0 | 237/301(79%) | 0/301(0%) | Plus/Plus |
Query 3 VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP 905 VM*+A++* T +S+C + *L M TALVAPIVGDKGE L+LLRNLPND S +SWLPNAGRMNDDFF++GEAY+LQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGD++IHT+RFYRDKNLIEQ+YTQRKGGV VLKSRPVD+SIVNFH+ER E MTS+VNKQ RLMEV TNGSSLG+SQ+KVPVDSLITV+VSLESKK+SCD L EL+P +VGSI+KFDGTVDYKEI R RKYIFPYKTFRDSKY E+L EAIAARNETAA QPETE P HP A+V YVTPPEGV+ITN A P Subject 13965 VM*QAQY*ETPVSSRCRFRKL*LIMTTALVAPIVGDKGEYLSLLRNLPNDNSQESWLPNAGRMNDDFFKIGEAYKLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDMLIHTLRFYRDKNLIEQVYTQRKGGVGSVLKSRPVDSSIVNFHNERKETMTSMVNKQNRLMEVFTNGSSLGSSQIKVPVDSLITVIVSLESKKVSCDGLSELVPNDVGSIVKFDGTVDYKEINRERKYIFPYKTFRDSKYREILTEAIAARNETAAAQPETETVPVHPIANVTYVTPPEGVSITNAAIP 14867
Range 2: 13964 to 14866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
463.4 bits(1005) | 0.0 | 227/301(75%) | 0/301(0%) | Minus/Minus |
Query 2 GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDASXXXXXXXXXXXXXX*V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT 904 G+A VI TPSGGVT*+T A+GC G SVSG AAVSFRAAIAS S+YFESL VLYGK+YFR+R ISL*STVPSNF IEPTS G NS+S SH+ FFDSN+T TVIKLSTGTL WL PKLEPFV TSINL CL TIEVI SFLSL*KFTID STGLLL T TPPFL V* CSIKFLSR*NL VC+++SPSRGSI TLSTPIVS G DLI TDTLIV PIERFCNLYASP LKKSSFIRPALGSQ+S + SFGKFL+K K+SPLSPTIGATNAV I+NH LH E V A +IT Subject 13964 GIAAFVIDTPSGGVT*VTFAIGCTGTVSVSG*AAAVSFRAAIASVKISRYFESLNVLYGKIYFRSRFISL*STVPSNFTIEPTSFGTNSESPSHETFFDSNETITVIKLSTGTLIWLDPKLEPFVKTSINLFCLLTIEVIVSFLSL*KFTIDESTGLLLRTLPTPPFLCV*TCSIKFLSR*NLRVCISISPSRGSIITLSTPIVSFGIDLIETDTLIVYPIERFCNLYASPILKKSSFIRPALGSQDSWELSFGKFLSKDKYSPLSPTIGATNAVVIINHSFLNLHLELTGVS*Y*ACYIT 14866
Range 3: 13965 to 14759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.5 bits(643) | 0.0 | 155/265(58%) | 0/265(0%) | Minus/Minus |
Query 3 FISCGDRFI*XXXXXXXXXXXIRKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY 797 F+SC +RF * LP+ I K LIRK++L A YFL+I+ V+ + R + YQF E I *+FL *R +S+QTV+ DFDLA S* RAIR FH*P LL+++ H F SF +KI++*RIHRSTFE T DA+FSL VDLF *+LVTIES SVY +TV W YYYSKHAHRFF FNR+ YIN V YRKIL* IR S+ +EI+IH T VREPR G +IR VSQ* Q L I N RSH*R CH *S L T * C S HY Subject 13965 FVSCSNRFG*DLPVFRIPKRLIRKDILPFAIYFLVIDRSVEFHNRAHVVRYQFGESIA*NFL*L*RNYNSDQTVDWDFDLARS*TRAIRKDFH*PILLINH*GHSFFSFIMKIYD*RIHRSTFENTTDATFSLRVDLFN*VLVTIES*SVYKHITVPWFYYYSKHAHRFFWDRFNRNRYINRVPYRKIL*LIRLSYFKEIIIHPTRVREPRFLGIIIRQVSQ*RQILAFIPNYRSH*RRCHY*SQLSKSTP*AHWCFLVLSLLHY 14759
Range 4: 14811 to 14867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 10/19(53%) | 0/19(0%) | Minus/Minus |
Query 849 RGSCVSYSHTLWWCHIDYV 905 R SC+ Y +TLWW +I +V Subject 14811 RDSCICYRYTLWWSYIGHV 14867
Range 5: 14317 to 14868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.2 bits(400) | 0.0 | 101/184(55%) | 0/184(0%) | Minus/Minus |
Query 355 KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL 906 +G*L L HPLV HR R SDAP LFQA F FV++SL L +P N * SYTE+ T R+LFP N+ R+ S+ + V IRRV+ M S LT L Q*SNC+ GL* G L+*SHS LPLT+SA +S F FFH EN +LT+PPVYF* H R LFF CR V L+SCHDRIL Subject 14317 QG*LHLLSIHPLVELHRSRSRSDAPELSLFQAEPPLFRFVQQSLRLRSPGISNP*TSYTERYTSVRDLFPCNRPFRRISQSSPRRSVPIRRVHRMKLSLTLTKL*Q*SNCRLGL*FGSILN*SHS*RLPLTYSAY*PLRS*FLFFHYENLRLTNPPVYF*EHYRRHLFFACRPVQLSSCHDRIL 14868
Range 6: 14083 to 14265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 41/61(67%) | 0/61(0%) | Minus/Minus |
Query 121 RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN 303 RPSFL I*S++IH* C LSKDFVTYT L *RN HS D R*GAK G HS SFS+K N Subject 14083 RPSFLLGSI*SKQIH*SCTLSKDFVTYTPLLF*RNHHSSDPR*GAKILGNYHSASFSVKTN 14265
Range 7: 13963 to 14031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 19/23(83%) | 0/23(0%) | Minus/Minus |
Query 1 ITAVQYYTLSSLVFLRTELVTLL 69 ITA YTLSSLVFL TELVTLL Subject 13963 ITAF*IYTLSSLVFLSTELVTLL 14031
Range 8: 13964 to 14263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 72/100(72%) | 0/100(0%) | Plus/Plus |
Query 2 SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG 301 SNVTSSVLRNTSELKV* * AVINN N VSGSY W * VF F EKL E* PR LAP*R S+E* FL + R V*VTKSFDR+H+*CI D*I +RNDG Subject 13964 SNVTSSVLRNTSELKV*I*KAVINNDNGVSGSYSWG*RRVFVFTEKLAE**FPRILAP*RGSDE**FL*NRRGV*VTKSFDRVHD*CICFD*IDPKRNDG 14263
Range 9: 14402 to 14866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 77/155(50%) | 0/155(0%) | Plus/Plus |
Query 440 GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP 904 GG VN +FS *KK D + A+ VNGS EWL* R P+QSP QFD+C S VR++E+ M TLRI T D ++ R+ L GN SR +V+ SV*D * F++ G + SD TK N +A*NR +GASD R+LC++TRGC N SYP Subject 14402 GGFVNRKFS**KKRNYDLNG**AE*VNGSLYEWL*FRIEPNQSPSRQFDHCYSFVRVKESFMRWTLRIGTERRGLDCEIRRNGRLQGNKSRTEVYLSV*DV*GFEIPGDLNRSDCCTKRNSGGSA*NRDSSGASDRERDLCNSTRGCIDNKCSYP 14866
Range 10: 14312 to 14362 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 12/17(71%) | 0/17(0%) | Plus/Plus |
Query 350 HYKILS*QEFNRTNLHS 400 H KILS*QE N T LH+ Subject 14312 HSKILS*QELN*TGLHA 14362
Range 11: 14071 to 14499 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 93/143(65%) | 0/143(0%) | Plus/Plus |
Query 109 IRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM 537 I+ S+ LY*ET RM P LGSLT V *M IS + E+RI YKIFR* T+LMY RLN KKRWACLE***+H TV YTL*DSIVTR * N+ST KEK AS V+SKVDRW+RQ *IF +KE K * + SR G*WK RM Subject 14071 IKASICLY*ETCRMIIPKNLGSLTRVG*MMISLK*ERRISYKIFR*GTRLMYLFRLNRSQKKRWACLE***NHGTVICLYTL*DSIVTRT*LNRSTRKEKVASVVFSKVDRWIRQS*IFIMKEKKL*PQWLISRIG*WKSLRM 14499
Range 12: 14560 to 14868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 51/103(50%) | 0/103(0%) | Plus/Plus |
Query 598 YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL 906 +R*++RK H ++S N Y+ R *+ T I RK* A S FRIR L I++ G * KR HE K R SLKQ+ R IR RT* M* HQRV * QL L Subject 14560 FR*SQRKFHAMDSPNWYRTTWARL*NSTERSITRK*IANGSISFRIRRLGIRNTGRS*PKRLLHETKQRRLSLKQRQFRCIRSRT*PM*LHQRVYR*QMQLSL 14868
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 14
Range 1: 14311 to 15207 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
596.7 bits(1296) | 0.0 | 256/299(86%) | 0/299(0%) | Plus/Plus |
Query 3 VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTA 899 VM* ARF*GT A+S+CNI Q+* TM TALVAPIVGDKGE L+LLRNLPND S DSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGDI+IHTIRFYRDKNLIEQ+YTQRKGGVS VLKSRPVD+SIVNFHSERNEK+TS+VNKQTRLMEV TN SSLGTSQ+KVP+DSLITV+VSLESKK+SC+ LFELIPTEV SII+FDGTVDYKEI RVRKYIFPYKTFRDSKY E L+EAIAARNE AATQPETE PAH TA+V YVTPPEGV ITN A Subject 14311 VM*LARF*GTPASSRCNIGQQ*FTMTTALVAPIVGDKGEFLSLLRNLPNDASLDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDILIHTIRFYRDKNLIEQVYTQRKGGVSSVLKSRPVDSSIVNFHSERNEKLTSMVNKQTRLMEVFTNNSSLGTSQIKVPIDSLITVVVSLESKKVSCETLFELIPTEVSSIIRFDGTVDYKEINRVRKYIFPYKTFRDSKYREFLSEAIAARNEIAATQPETEAIPAHTTANVTYVTPPEGVAITNAA 15207
Range 2: 14751 to 15206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 123/152(81%) | 0/152(0%) | Minus/Minus |
Query 443 AVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDAS 898 A LVI TPSGGVT*+T AV CAG+ SVSG VAA+SFRAAIAS NS+YFESLKVLYGK+YFRTR ISL*STVPSN IIE TSVGI+SKS+SH+ FFDSNDT TVIKLS GTL WLVPKL V TSINLVCLFTIEV FSFLSL*KFTID S Subject 14751 AALVIATPSGGVT*VTFAVVCAGIASVSG*VAAISFRAAIASDKNSRYFESLKVLYGKIYFRTRFISL*STVPSNLIIELTSVGISSKSVSHETFFDSNDTTTVIKLSMGTLIWLVPKLLLLVKTSINLVCLFTIEVNFSFLSL*KFTIDES 15206
Range 3: 14310 to 14705 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.1 bits(557) | 0.0 | 114/132(86%) | 0/132(0%) | Minus/Minus |
Query 2 V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT 397 V* CSIKFLSR*NLIVC+ MSPSRGSI TLSTPIVSLG DLI TDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQES ++SFGKFLNK K+SPLSPTIGATNAV IVNH C ILH E A VPQNRA HIT Subject 14310 V*TCSIKFLSR*NLIVCIRMSPSRGSIITLSTPIVSLGIDLIETDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESREASFGKFLNKDKNSPLSPTIGATNAVVIVNHCCPILHLELAGVPQNRASHIT 14705
Range 4: 14311 to 15039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
374.5 bits(811) | 0.0 | 178/243(73%) | 0/243(0%) | Minus/Minus |
Query 3 RKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY 731 RKN+LSHA YFL+IN P+K YYRTYFSWYQ +E + *+FLRF Y DS+QTV+ DFDLASS*A I FH*P LLV++RS FFISFTVKIH+*RIHRSTFE+ D SFSLSVDLFY*ILV+IESYSVY DVTVS YY S++AHRFFG FNRD +INCVTY KIL*P+ FS+SEEIVIHST VR PR+ G VIR V Q* Q LPLISNNRSH*R HC S L NIT * R CSSEPS SHY Subject 14311 RKNILSHAIYFLVINCPIKPYYRTYFSWYQLKECLA*NFLRFQ*YYDSDQTVDGDFDLASS*ATIISKDFH*PSLLVYHRSQFFISFTVKIHD*RIHRSTFEHATDTSFSLSVDLFY*ILVSIESYSVYKDVTVSRFYYNSEYAHRFFGNRFNRDRHINCVTY*KIL*PVCFSNSEEIVIHSTRVR*PRVEGSVIRQVPQ*RQKLPLISNNRSH*RSRHCKSLLSNITP*ARWCSSEPS*SHY 15039
Range 5: 15082 to 15216 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 27/45(60%) | 0/45(0%) | Minus/Minus |
Query 774 LRGSCVSYSHTLWWCHIDYVXXXXXXXXXXXXXXRGGFISCGDRF 908 ++GS +SYSH+LWWCHI +VR MRR + CF L RG F+SC +RF Subject 15082 IKGSRISYSHSLWWCHIGHVRCCMRRYSLCFWLSRGNFVSCCNRF 15216
Range 6: 14748 to 15212 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 103/155(66%) | 0/155(0%) | Plus/Plus |
Query 440 GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP 904 GG VN EFSQ*KK*K DFD +QAD VNGS *LRN*P+QSP QFD+C SI+ IEE+ M TL DTN*S+FDNKV* D *L GN SRAKV+FSV*DF*RFKV G+ SD TK N RD+A NR YTGA + R+LCDTTRG YN* P Subject 14748 GGFVNREFSQ*KK*KIDFDGKQAD*VNGSLY****LRN*PNQSPHRQFDHCRSIIGIEESFMRDTL*ADTN*SKFDNKV*WDS*LQGNKSRAKVYFSV*DF*RFKVPGIFIRSDCSTKRNCRDSARNRGYTGAYNSERDLCDTTRGSGYN*CGSP 15212
Range 7: 14310 to 14609 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 80/100(80%) | 0/100(0%) | Plus/Plus |
Query 2 SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG 301 SNVTSSVLRNTSELKV*Y TAVI N + VSGSYCWR*GGVF FIE+L E*R PR LA *R SNE*RFLQS RS+ VTKSF+RLHN*C+ D*I SQRNDG Subject 14310 SNVTSSVLRNTSELKV*YWTAVIYNDDCVSGSYCWR*GGVFVFIEELAE*RFPRLLAT*RGSNE*RFLQSWRSIQVTKSFNRLHN*CVCLD*IDSQRNDG 14609
Range 8: 14658 to 14708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 15/17(88%) | 0/17(0%) | Plus/Plus |
Query 350 HYKILS*QEFNRTNLHS 400 HYKILS QEFNRT+LHS Subject 14658 HYKILSRQEFNRTSLHS 14708
Range 9: 14660 to 15199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 127/180(71%) | 0/180(0%) | Minus/Minus |
Query 352 *L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL* 891 *L* PLVVSHR R APV* LF A SR+F FV +SL + P TLNL*KSYTEK TFAR+LFP NQ S QTLLSNLLQLVS +RV M SSI ILRQ*SNC+ GL* G*FLS + LPLT SAC SKS FHFFHCENS+LT+PPVYF* * LLFFECR VLLNSC DRIL* Subject 14660 *L*PLPLVVSHRSRSLLYAPV*PLFLAESRQFRFVLQSLRIKIPGTLNL*KSYTEKYTFARDLFPCNQLSHQTLLSNLLQLVSAQRVSRMKLSSIPMILRQ*SNCRWGL*FG*FLSYYY**RLPLT*SACLPSKSIFHFFHCENSRLTNPPVYF*ARY*HLLFFECRLVLLNSCLDRIL* 15199
Range 10: 14435 to 14611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 46/59(78%) | 0/59(0%) | Minus/Minus |
Query 127 RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIK 303 RPSFLWE I*SR+ H*LCNL KDFVT LL L*RNRHSFD R* AK+RG RHS S SIK Subject 14435 RPSFLWESI*SRQTH*LCNLLKDFVTCMLLQL*RNRHSFDPR*VAKSRGKRHSASSSIK 14611
Range 11: 14309 to 14377 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 23/23(100%) | 0/23(0%) | Minus/Minus |
Query 1 ITAVQYYTLSSLVFLRTELVTLL 69 ITAVQYYTLSSLVFLRTELVTLL Subject 14309 ITAVQYYTLSSLVFLRTELVTLL 14377
Range 12: 14414 to 14833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 108/140(77%) | 0/140(0%) | Plus/Plus |
Query 106 EIRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WK 525 EIRGS LY* T RMT P LG LT VE*MTISSE EK GYKIF+*VTQLM SRLN FPKKRWA E **+ ETVTS YTL*DSI TRI**NKSTLKEKE S SKVDRW+RQ *IFTVKEMK *LR *TSR G*WK Subject 14414 EIRGSFCLY*GTCRMTLPSTLGYLTRVE*MTISSELEKHTGYKIFQ*VTQLMCLSRLNRFPKKRWAYSEL**NRETVTSLYTL*DSIETRI**NKSTLKEKEVSVACSKVDRWIRQS*IFTVKEMKN*LRW*TSRLG*WK 14833
Range 13: 14906 to 15214 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 69/103(67%) | 0/103(0%) | Plus/Plus |
Query 598 YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL 906 Y NRRK H +S +*YQLK*VR** L G LI RK* ACES FFRIRLLEIQS G++ KR HE K PR S KQ+L+RRI++RT* M*HHQR L*L +LPL Subject 14906 YHWNRRKFHARHSLS*YQLK*VR**GLMGQLITRK*IACESIFFRIRLLEIQSTGNFYPKRLQHETKLPRLSQKQRLYRRIQQRT*PM*HHQREWL*LMRLPL 15214
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 14
Range 1: 14050 to 14946 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
589.4 bits(1280) | 0.0 | 253/299(85%) | 0/299(0%) | Plus/Plus |
Query 3 VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTA 899 VM*+ARF*GT A+S+CNI Q+* TM TALVAPIVGDKGE L+LLRNLPND S DSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGDI+IHTIRFYRDKNLIEQ+YTQRKGGVS VLKSRPVD+SIVNFHSER EK+TS+VNKQTRLMEV TN SSLGTSQ+KVP+DSLITV+VSLESKK+SC+ LFELIPTEV SII+FDGTVDYKEI R RKYIFPYKTFRDSKY E L EAIAARNE AATQPETE P H TA+V YVTPPEGV ITN A Subject 14050 VM*QARF*GTPASSRCNIGQQ*FTMTTALVAPIVGDKGEFLSLLRNLPNDASLDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDILIHTIRFYRDKNLIEQVYTQRKGGVSSVLKSRPVDSSIVNFHSERYEKLTSMVNKQTRLMEVFTNNSSLGTSQIKVPIDSLITVVVSLESKKVSCETLFELIPTEVSSIIRFDGTVDYKEINRERKYIFPYKTFRDSKYREFLTEAIAARNEIAATQPETEAKPVHTTANVTYVTPPEGVAITNAA 14946
Range 2: 14490 to 14945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 120/152(79%) | 0/152(0%) | Minus/Minus |
Query 443 AVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDAS 898 A LVI TPSGGVT*+T AV C G+ SVSG VAA+SFRAAIAS NS+YFESLKVLYGK+YFR+R ISL*STVPSN IIE TSVGI+SKS+SH+ FFDSNDT TVIKLS GTL WLVPKL V TSINLVCLFTIEV FS+LSL*KFTID S Subject 14490 AALVIATPSGGVT*VTFAVVCTGLASVSG*VAAISFRAAIASVKNSRYFESLKVLYGKIYFRSRFISL*STVPSNLIIELTSVGISSKSVSHETFFDSNDTTTVIKLSMGTLIWLVPKLLLLVKTSINLVCLFTIEVNFSYLSL*KFTIDES 14945
Range 3: 14049 to 14444 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
257.2 bits(555) | 0.0 | 114/132(86%) | 0/132(0%) | Minus/Minus |
Query 2 V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT 397 V* CSIKFLSR*NLIVC+ MSPSRGSI TLSTPIVSLG DLI TDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQES ++SFGKFLNK K+SPLSPTIGATNAV IVNH C ILH E A VPQNRA HIT Subject 14049 V*TCSIKFLSR*NLIVCIRMSPSRGSIITLSTPIVSLGIDLIETDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESREASFGKFLNKDKNSPLSPTIGATNAVVIVNHCCPILHLELAGVPQNRACHIT 14444
Range 4: 14050 to 14778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.6 bits(796) | 0.0 | 178/243(73%) | 0/243(0%) | Minus/Minus |
Query 3 RKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY 731 RK++L A YFL+IN P+K YYRTYFSWYQ +E *+FLRF Y DS+QTV+ DFDLASS*A I FH*P LLV++RS FFISFTVKIH *RIHRSTFE+ D SFSLSVDLFY*ILVTIESYSVY DVTVS YY S++AHRFFG FNRD +INCVTY KIL*PI FS+SEEIVIHST VR PRI G VIR V Q* Q LPLISNNRSH*R HC S L NIT * R CSSEPS SHY Subject 14050 RKDILPFAIYFLVINRPIKPYYRTYFSWYQLKECFA*NFLRFQ*YYDSDQTVDGDFDLASS*ATIISKDFH*PSLLVYHRSQFFISFTVKIHY*RIHRSTFEHATDTSFSLSVDLFY*ILVTIESYSVYKDVTVSRFYYNSEYAHRFFGNRFNRDRHINCVTY*KIL*PICFSNSEEIVIHSTRVR*PRIEGSVIRQVPQ*RQKLPLISNNRSH*RSRHCKSLLSNITP*ARWCSSEPSLSHY 14778
Range 5: 14824 to 14955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 26/44(59%) | 0/44(0%) | Minus/Minus |
Query 777 LRGSCVSYSHTLWWCHIDYVXXXXXXXXXXXXXXRGGFISCGDR 908 ++GS +SYSH+LWWCHI +VR M R CF L RG F+SC DR Subject 14824 IKGSRISYSHSLWWCHIGHVRCCMHRFGLCFWLSRGNFVSCCDR 14955
Range 6: 14399 to 14938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.3 bits(540) | 0.0 | 125/180(69%) | 0/180(0%) | Minus/Minus |
Query 352 *L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL* 891 *L* PLVVSHR R APV LF A SR+F FV RS L TP TLNL*KSYTE+ T R+LFP NQ S QTLLSNLLQLVS +RV+ M SSI ILRQ*SNC+ GL* G*FLS + LPLT SAC SKS FH FHCENS LT+PPVYF* * LLFFECR VLLNSCHDRIL* Subject 14399 *L*PLPLVVSHRSRSLLYAPVWPLFLAESRQFRFVLRSPQLKTPGTLNL*KSYTERYTSVRDLFPCNQPSHQTLLSNLLQLVSAQRVFRMKLSSIPMILRQ*SNCRWGL*FG*FLSYYY**RLPLT*SACLPSKSIFHIFHCENSLLTNPPVYF*ARY*HLLFFECRLVLLNSCHDRIL* 14938
Range 7: 14174 to 14350 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 48/59(81%) | 0/59(0%) | Minus/Minus |
Query 127 RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIK 303 RPSFLWE I*SR+ H*LCNL KDFVTY LL L*RNRHSFD R* AKNRG RHS S SIK Subject 14174 RPSFLWESI*SRQTH*LCNLLKDFVTYMLLQL*RNRHSFDPR*VAKNRGKRHSASSSIK 14350
Range 8: 14048 to 14116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 23/23(100%) | 0/23(0%) | Minus/Minus |
Query 1 ITAVQYYTLSSLVFLRTELVTLL 69 ITAVQYYTLSSLVFLRTELVTLL Subject 14048 ITAVQYYTLSSLVFLRTELVTLL 14116
Range 9: 14487 to 14951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 100/155(65%) | 0/155(0%) | Plus/Plus |
Query 440 GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP 904 GG VN EFSQ*K *K DFD +QAD VNGS *LRN*P+QSP QFD+C SI+ IEE+ M TL DTN*S+FDNKV* D *L GN SR +V+ SV*DF*RFKV GV * DR TK N RD+A NR TGA + R+LCDTTRG YN* P Subject 14487 GGFVNSEFSQ*KI*KIDFDGKQAD*VNGSLY****LRN*PNQSPHRQFDHCRSIIGIEESFMRNTL*ADTN*SKFDNKV*WDG*LQGNKSRTEVYLSV*DF*RFKVPGVFN*GDRSTKRNCRDSARNRGQTGAYNSERDLCDTTRGSGYN*CGSP 14951
Range 10: 14049 to 14348 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 82/100(82%) | 0/100(0%) | Plus/Plus |
Query 2 SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG 301 SNVTSSVLRNTSELKV*Y TAVI N + VSGSYCWR*GGVF FIE+L E*R PRFLA *R SNE*RFLQS RS+*VTKSF+RLHN*C+ D*I SQRNDG Subject 14049 SNVTSSVLRNTSELKV*YWTAVIYNDDCVSGSYCWR*GGVFVFIEELAE*RFPRFLAT*RGSNE*RFLQSWRSI*VTKSFNRLHN*CVCLD*IDSQRNDG 14348
Range 11: 14397 to 14447 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 16/17(94%) | 0/17(0%) | Plus/Plus |
Query 350 HYKILS*QEFNRTNLHS 400 HYKILS*QEFNRT+LHS Subject 14397 HYKILS*QEFNRTSLHS 14447
Range 12: 14153 to 14572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.3 bits(468) | 0.0 | 110/140(79%) | 0/140(0%) | Plus/Plus |
Query 106 EIRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WK 525 EIRGS LY* T RMT P ILG LT VE*MTISSE EK IGYKIF+*VTQLM SRLN FPKKRWA E **+ ETVTS YTL*DSIVTRI**NKSTLKEKE S SKVDRW+RQ *IFTVK+MK *LR *TSR G*WK Subject 14153 EIRGSFCLY*GTCRMTLPSILGYLTRVE*MTISSELEKHIGYKIFQ*VTQLMCLSRLNRFPKKRWAYSEL**NRETVTSLYTL*DSIVTRI**NKSTLKEKEVSVACSKVDRWIRQ**IFTVKDMKN*LRW*TSRLG*WK 14572
Range 13: 14645 to 14953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 66/103(64%) | 0/103(0%) | Plus/Plus |
Query 598 YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL 906 Y NRRK H +S +*YQLK*VR** L G LI RK* A S FRIRLLEIQS GS+*++RS HE K PR S KQ+ +R I++RT* M*HHQR L*L +LPL Subject 14645 YHWNRRKFHAKHSLS*YQLK*VR**GLMGRLITRK*IANGSISFRIRLLEIQSTGSF*LRRSQHETKLPRLSQKQRPNRCIQQRT*PM*HHQREWL*LMRLPL 14953
Nucleotide Sequence (646 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
303.5 | 857.9 | 49% | 1.785e-80 | 38% | JQ023131.1 | |
303.5 | 857.9 | 49% | 1.785e-80 | 38% | NC_016509.1 | |
295.7 | 975.7 | 40% | 3.949e-78 | 36% | KU674797.1 | |
294.3 | 988.3 | 26% | 1.024e-77 | 38% | KU674796.1 | |
280.6 | 887.4 | 41% | 1.407e-73 | 38% | KT000364.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7
Range 1: 3989 to 4603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.5 bits(656) | 0.0 | 127/205(62%) | 0/205(0%) | Plus/Plus |
Query 9 NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ 623 +KSS+L GGGL+L+AS++AFRRQ+ +A G + VR+S+ +K K+VLGL ++K+ G +R A+ QGSV+++K +A AE +RV+ + E+GYIYGDSLNVQTVCLTA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++ E RA KL G+A LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ + Subject 3989 SKSSLLMFGGGLLLMASMLAFRRQILNRAHGLAQGVRTSLKKTKGKLVLGLSDLKERLGSVRRNAVVSAQGSVRSLKVVARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE 4603
Range 2: 3985 to 4593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.5 bits(525) | 0.0 | 120/203(59%) | 0/203(0%) | Minus/Minus |
Query 5 CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ 613 C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK A P NF AL +S L H AA P PTLP+YLNR G RIADFS* DD+ A AVRHTV*TF+ESP*MYPIS TRSL SA A+ F TDP* AFL P L F +PNT+ E RT NP*A K R A +EAIS RPPP + DDL + Subject 3985 CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALATTFNERTDP*AETTAFLLTLPSLSFKSLRPNTSLPFVFFKEVRTPCANP*ALFKIWRRKASMEAISNRPPPNISNDDLLR 4593
Range 3: 3986 to 4594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 78/203(38%) | 0/203(0%) | Minus/Minus |
Query 6 LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP 614 LP++ + IH+PTLRE NLQ G TFL QRQ Y Q + P L +T Q RY +++ P +P+PL R K+ FL+AR I K H LNVQR+ V+VP SR+ + L H SLS D P PE+L +AQT*H R D P+S +NL + S+Q TS * R P Subject 3986 LPVEASNALIHVPTLREHNLQAGCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPRYHLQ*TH*SLSRNDGIPSYTPESLFQVAQT*HQLTFRLFQGGADTLR*PMSSVQNLAPKSEHGSHQ**TSPEH*QRRLTP 4594
Range 4: 4264 to 4599 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 47/112(42%) | 0/112(0%) | Plus/Plus |
Query 284 G*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA 619 G + VHLR ERSD V Y +R+ ++ L EI A AV V+ E + SG E+ Q QG E+ S G D KERC Q A+ VPEAWG V* L AA+ Subject 4264 GRDGVHLRRLVERSDRVPYGRRISIIEL*EIGDSYITRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*GSQLADCVPEAWGRV*GRY*LLQAAS 4599
Range 5: 4131 to 4208 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 14/26(54%) | 0/26(0%) | Plus/Plus |
Query 151 C*VWAI*RRVSGSQRGKRSNVLRDRC 228 C*V A *+R SG G S LRD+C Subject 4131 C*V*AT*KRDSGV*EGMPSFRLRDQC 4208
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7
Range 1: 3989 to 4603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.5 bits(656) | 0.0 | 127/205(62%) | 0/205(0%) | Plus/Plus |
Query 9 NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ 623 +KSS+L GGGL+L+AS++AFRRQ+ +A G + VR+S+ +K K+VLGL ++K+ G +R A+ QGSV+++K +A AE +RV+ + E+GYIYGDSLNVQTVCLTA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++ E RA KL G+A LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ + Subject 3989 SKSSLLMFGGGLLLMASMLAFRRQILNRAHGLAQGVRTSLKKTKGKLVLGLSDLKERLGSVRRNAVVSAQGSVRSLKVVARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE 4603
Range 2: 3985 to 4593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.5 bits(525) | 0.0 | 120/203(59%) | 0/203(0%) | Minus/Minus |
Query 5 CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ 613 C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK A P NF AL +S L H AA P PTLP+YLNR G RIADFS* DD+ A AVRHTV*TF+ESP*MYPIS TRSL SA A+ F TDP* AFL P L F +PNT+ E RT NP*A K R A +EAIS RPPP + DDL + Subject 3985 CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALATTFNERTDP*AETTAFLLTLPSLSFKSLRPNTSLPFVFFKEVRTPCANP*ALFKIWRRKASMEAISNRPPPNISNDDLLR 4593
Range 3: 3986 to 4594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 78/203(38%) | 0/203(0%) | Minus/Minus |
Query 6 LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP 614 LP++ + IH+PTLRE NLQ G TFL QRQ Y Q + P L +T Q RY +++ P +P+PL R K+ FL+AR I K H LNVQR+ V+VP SR+ + L H SLS D P PE+L +AQT*H R D P+S +NL + S+Q TS * R P Subject 3986 LPVEASNALIHVPTLREHNLQAGCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPRYHLQ*TH*SLSRNDGIPSYTPESLFQVAQT*HQLTFRLFQGGADTLR*PMSSVQNLAPKSEHGSHQ**TSPEH*QRRLTP 4594
Range 4: 4264 to 4599 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 47/112(42%) | 0/112(0%) | Plus/Plus |
Query 284 G*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA 619 G + VHLR ERSD V Y +R+ ++ L EI A AV V+ E + SG E+ Q QG E+ S G D KERC Q A+ VPEAWG V* L AA+ Subject 4264 GRDGVHLRRLVERSDRVPYGRRISIIEL*EIGDSYITRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*GSQLADCVPEAWGRV*GRY*LLQAAS 4599
Range 5: 4131 to 4208 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 14/26(54%) | 0/26(0%) | Plus/Plus |
Query 151 C*VWAI*RRVSGSQRGKRSNVLRDRC 228 C*V A *+R SG G S LRD+C Subject 4131 C*V*AT*KRDSGV*EGMPSFRLRDQC 4208
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 10
Range 1: 4130 to 4744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
295.7 bits(639) | 0.0 | 126/205(61%) | 0/205(0%) | Plus/Plus |
Query 9 NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ 623 +K+S+L GGGL+L+AS+ AFRRQ+ KA G + VR+S+ +K K+VLGLG++K G +R A+ Q S +++K +A AE +RV+ + E+GYIYGDSLNVQTVC TA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+ ++ E RALKL G+A LALT KKGVSRAA+LQI+FPKRGDVYEGVT FYRQ+ + Subject 4130 SKTSLLVFGGGLLLMASMFAFRRQILNKAHGLAQGVRTSLDKTKGKLVLGLGDLKARLGRVRRNAVVSAQVSARSLKVIARAEFKDRVSGYVEEMGYIYGDSLNVQTVCFTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRYIKGGEYGRALKLMGVAACLALTAKKGVSRAASLQIVFPKRGDVYEGVTTFYRQRAE 4744
Range 2: 4126 to 4734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.8 bits(504) | 0.0 | 115/203(57%) | 0/203(0%) | Minus/Minus |
Query 5 CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ 613 C *K+VTPSYTSPRFGN IC+LAALLTPFF V+AK A P NF AL +S L + AA P PTLP+YLNR G RIADFS* DD+ A AV+HTV*TF+ESP MYPIS TRSL SA A F D * AFL P L F P+PNT+ + E RT NP*A K R A +EAIS RPPP + D L + Subject 4126 CL*KVVTPSYTSPRFGNTICKLAALLTPFFAVNAKHAATPINFKALPYSPPLIYLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVKHTV*TFNESPYMYPISSTYPDTRSLNSALAMTFNERADT*AETTAFLLTLPSLAFKSPRPNTSLPFVLSREVRTPCANP*ALFKIWRRKANMEAISNRPPPNTSNDVLLR 4734
Range 3: 4385 to 4735 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 54/117(46%) | 0/117(0%) | Minus/Minus |
Query 264 LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTL 614 LP++ + IH+PTLRE +LQ G TFL QRQ RY Q Q P L + Q RY I++ P +P+PL R ++ FL+AR I C KTH LNVQRI V VP SR+T+ Subject 4385 LPVEGSNALIHVPTLREHDLQAGSPTYTFLCGQRQTRRYAHQFQSPAILAPFDIPQCRYPISDAPYIPEPLRRK*YENR*FLIAR**ICGCRKTHSLNVQRIAVYVPHLLHVSRHTI 4735
Range 4: 4157 to 4339 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 22/61(36%) | 0/61(0%) | Minus/Minus |
Query 36 LSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTS 218 LS D P PE+ +AQT*H F R D P+S +NL + S+Q TS Subject 4157 LSRNDSIPSYPPESRFQVAQT*HQFTFCLIQRGADTLR*PVSFVQNLAPKSEHGSHQQ*TS 4339
Range 5: 4273 to 4740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 66/156(42%) | 0/156(0%) | Plus/Plus |
Query 152 VRFGQYEEEFRGVKEESDQMYSGIGANYEGARRGRDE*ACCGFFG*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA 619 VR G+ E E R K+E + SGI A EG G +C G + VH+R F ERSD V Y R+ ++ L EI A AV V+ E +W SG E+ Q QG E+ SG G DRKERC Q A+ VPEAWG V* L AA+ Subject 4273 VRSGRLESETREGKKECCRFGSGISAFIEGHSEG*I*RSCVWIRGGDGVHIRRFVERSDCVFYGSRISIIEL*EISDSRITCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GCQLADRVPEAWGRV*GRYYLLQAAS 4740
Range 6: 4596 to 4745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 23/50(46%) | 0/50(0%) | Plus/Plus |
Query 475 SGR*SCLV*R*PWR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK 624 +G *+ *R WR* +RKV P C+ CSRSVG CM+ GS K Subject 4596 AGL*N*WA*RRVWR*PQRKV*VGLPACRSCSRSVGTCMRALLPSTGSEQK 4745
Range 7: 4416 to 4496 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 18/27(67%) | 0/27(0%) | Plus/Plus |
Query 295 GTSTGIR*TFRQCVLQQALICRRATRN 375 GT T IR*TFR CVL+Q I RA RN Subject 4416 GTYTAIR*TFRLCVLRQPHIYHRAMRN 4496
Range 8: 4128 to 4340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 26/71(37%) | 0/71(0%) | Plus/Plus |
Query 7 GINRQC*P*AEVLY**LRSLRSEGRFL*RLKGLCVKSVLLWHFLRRKSC*VWAI*RRVSGSQRGKRSNVLR 219 G+ R+ * EV * L +F +L G S LW + C*VWA *+R SG G S LR Subject 4128 GVRRRY*CSGEVYC*WLPCSLFGAKF*TKLTG*RKVSAPLWIRQKVNWC*VWAT*KRDSGG*EGMLSFRLR 4340
Range 9: 4620 to 4709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 17/30(57%) | 0/30(0%) | Minus/Minus |
Query 499 HTHPHASGTKFAGWRLC*HLSFLSAPRLPL 588 HT PHASGT+ A W+ HLS S P PL Subject 4620 HTRPHASGTRSASWQPYLHLSLRSTPNTPL 4709
Range 10: 4335 to 4496 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 24/54(44%) | 0/54(0%) | Minus/Minus |
Query 214 ISRSTTTNKRLL*DTLSERSANPRRCTRFHPKKPQHAHSSRPRRAPS*FAPIPE 375 IS S+ + RL *+T SERS N R CT P+ H +P PS A IPE Subject 4335 ISHSSMIDMRLP*NTQSERSTNRRICTPSPPRIQTHDL*IQPSL*PSMNALIPE 4496
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 9
Range 1: 4065 to 4679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
294.3 bits(636) | 0.0 | 124/205(60%) | 0/205(0%) | Plus/Plus |
Query 9 NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ 623 +KSS+L GGGL+L+AS+ AFRR++ KA G + V +S+ ++ K+VLGLG++K G +R A+ Q SV+++K +A AE +RV+ + E+GYIYGDSLNVQTVCLTA+AYLSS YEKSA L+LL PKRFRYIGSVGYG+AAL+C++ E RA KL G+A LALT KKGVSRAA+LQI+FPKRGDVYEG+T FYRQ+ + Subject 4065 SKSSLLVFGGGLLLMASMFAFRRRILNKAHGLAQGVCTSLEKTRGKLVLGLGDLKARLGRVRRNAVVSAQVSVRSLKVIARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAFLVLLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGVSRAASLQIVFPKRGDVYEGITTFYRQRAE 4679
Range 2: 4061 to 4669 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.5 bits(512) | 0.0 | 117/203(58%) | 0/203(0%) | Minus/Minus |
Query 5 CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ 613 C *K+V PSYTSPRFGN IC+LAALLTPFF V+AK A P NF AL +S L H AA P PTLP+YLNR G R ADFS* DD+ A AVRHTV*TF+ESP MYPIS TRSL SA A F TD * AFL P L F P+PNT+ L + E +T NP*A K R A +EAIS RPPP + DDL + Subject 4061 CL*KVVMPSYTSPRFGNTICKLAALLTPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNTRNADFS*LDDRYAAAVRHTV*TFNESPYMYPISSTYPDTRSLNSALAITFKERTDT*AETTAFLLTLPSLAFKSPRPNTSLPLVFSREVQTPCANP*ALFKIRRRKANMEAISNRPPPNTSNDDLLR 4669
Range 3: 4062 to 4670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 80/203(39%) | 0/203(0%) | Minus/Minus |
Query 6 LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP 614 LP++ + IH+PTLRE +LQ G TFL QRQ RY Q + P L +T Q RY I++ P +P+PL R K FL+AR I C K H LNVQRI V VP SR+T+ L H LS D P PE+ +AQT*H F R D P+S +N + S+Q TS * R P Subject 4062 LPVEGSNALIHVPTLREHDLQAGSPTYTFLCGQRQTRRYAHQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRE*YKKR*FLIAR**ICGCRKAHGLNVQRIAVYVPHLLHVSRHTIFKFSPRYHLQRTH*YLSRNDSIPSYPPESRFQVAQT*HQFTSCLFQRGADTLR*PVSFVQNSAPKSEHGSHQQ*TSPEH*QRRLTP 4670
Range 4: 4208 to 4675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 66/156(42%) | 0/156(0%) | Plus/Plus |
Query 152 VRFGQYEEEFRGVKEESDQMYSGIGANYEGARRGRDE*ACCGFFG*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA 619 VR G+ E E R K+E + SGI A +EG G +C G + VH+R F ERSD V Y R+ ++ L EI A AV V+ E +W SG E+ Q QG E+ SG G DRKERC Q A+ VPEAWG V* L AA+ Subject 4208 VRSGRLESETREGKKECCRFGSGISAFFEGDSEG*I*RSCVWIRGGDGVHIRRFVERSDRVPYGSRISIIEL*EISVSCITRA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GCQLADRVPEAWGRV*GHYYLLQAAS 4675
Range 5: 4270 to 4506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 34/79(43%) | 0/79(0%) | Minus/Minus |
Query 214 SKPLHHNQHSQCT*TALALREEG*RISRSTTTNKRLL*DTLSERSANPRRCTRFHPKKPQHAHSSRPRRAPS*FAPIPE 450 S PL H + S T*TA A + IS S+ + RL * T SERS N R CT P+ H +P +PS A IPE Subject 4270 SMPLSHIRRSLYT*TA*ARVIQETLISHSSMIDMRLP*GTRSERSTNRRICTPSPPRIQTHDL*IQPSLSPSKNALIPE 4506
Range 6: 4555 to 4644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 17/30(57%) | 0/30(0%) | Minus/Minus |
Query 499 HTHPHASGTKFAGWRLC*HLSFLSAPRLPL 588 HT PHASGT+ A W+ HLS S P PL Subject 4555 HTRPHASGTRSASWQPYLHLSLRSTPNTPL 4644
Range 7: 4567 to 4680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 19/38(50%) | 0/38(0%) | Plus/Plus |
Query 511 WR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK 624 WR* +RKV P C+ CSRSVG CM+ GS K Subject 4567 WR*PQRKV*VGLPACRSCSRSVGTCMRALLPSTGSEQK 4680
Range 8: 4351 to 4431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 17/27(63%) | 0/27(0%) | Plus/Plus |
Query 295 GTSTGIR*TFRQCVLQQALICRRATRN 375 GT T IR*TFR C L+Q I RA RN Subject 4351 GTYTAIR*TFRPCALRQPHIYHRAMRN 4431
Range 9: 4063 to 4284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 28/74(38%) | 0/74(0%) | Plus/Plus |
Query 7 GINRQC*P*AEVLY**LRSLRSEGRFL*RLKGLCVKSVLLWHFLRRKSC*VWAI*RRVSGSQRGKRSNVLRDRC 228 G++R+C* EV * L F +L G S LW C*VWA *+R SG G S LR +C Subject 4063 GVSRRC*CSGEVYC*WLPCSLFGAEF*TKLTG*RKVSAPLWKRQEVNWC*VWAT*KRDSGG*EGMLSFRLRYQC 4284
UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence
Sequence ID: KT000364.1 Length: 5279 Number of Matches: 8
Range 1: 264 to 878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
280.6 bits(606) | 0.0 | 121/205(59%) | 0/205(0%) | Plus/Plus |
Query 9 NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ 623 +KSS+L GGGL+L+AS+ AFRRQ+ KA G + VR+S VLGL ++K G +R A+ Q SV++MK E +RV+ + E+GYIYGDSLNVQTVCL +AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++ E RA KL G+ LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ + Subject 264 SKSSLLVFGGGLLLMASMFAFRRQILNKANGLAQGVRTSXXXXXXXXVLGLSDLKVRLGSXRRNAVVSAQESVRSMKVXXXXEFKDRVSGYVEEMGYIYGDSLNVQTVCLXXAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLIGVXXCLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE 878
Range 2: 260 to 868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 114/203(56%) | 0/203(0%) | Minus/Minus |
Query 5 CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ 613 C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK P NF AL +S L H AA P PTLP+YLNR G RIADFS* DD+ A RHTV*TF+ESP*MYPIS TRSL S FI TD * AFL P L F +PNT E RT NP A K R A +EAIS RPPP + DDL + Subject 260 CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHXXTPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAXXRHTV*TFNESP*MYPISSTYPDTRSLNSXXXXTFIERTDS*AETTAFLLXLPSLTFKSLRPNTXXXXXXXXEVRTPCANPLALFKIWRRKANMEAISNRPPPNTSNDDLLR 868
Range 3: 291 to 869 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 74/193(38%) | 0/193(0%) | Minus/Minus |
Query 36 LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTS 614 LP++ +T IH+PTLRE +LQ G TFL QRQ Q + P L +T Q RY I++ P +P+PL R K+ FL+ARR I K H LNVQRI V+V SR+T+ LH H LS D P PE+ +AQT H D P+S +NL + S+Q TS Subject 291 LPVEASNTLIHVPTLREHDLQAGSPTCTFLCGQRQTXXXAYQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRK*YKNRRFLIARR*ICGXXKAHSLNVQRIAVNVSHLFHVSRHTIFKFXXXXHLH*TH*FLSRNDSIPSXTPESHFQVAQTQHXXXXXXXXGGADTLR*PISFVQNLAPKSEHGSHQQ*TS 869
Range 4: 425 to 874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 61/150(41%) | 0/150(0%) | Plus/Plus |
Query 170 EEEFRGVKEESDQMYSGIGANYEGARRGRDE*ACCGFFG*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA 619 E E R K+E + SGI A EG +C G + +HLR F ERSD V R+ +V L EI A AV V+ E +W SG E+ Q QG E+ G DRKERC Q A+ VPEAWG V* C L AA+ Subject 425 ESETREXKKECCRFGSGISAFNEGXXXXXI*RSCVWIRGRDGIHLRRFVERSDCVPXXXRISIVEL*EICDSYITCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDRRXXVFGVDRKERCK*GCQLADRVPEAWGRV*GCY*LLQAAS 874
Range 5: 766 to 879 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 20/38(53%) | 0/38(0%) | Plus/Plus |
Query 511 WR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK 624 WR* +RKV P C+ CSRSVG CM+V GS K Subject 766 WR*PQRKVQVGLPACRSCSRSVGTCMRVLLASTGSEQK 879
Range 6: 553 to 630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 15/26(58%) | 0/26(0%) | Plus/Plus |
Query 298 TSTGIR*TFRQCVLQQALICRRATRN 375 T T IR*TFR C I RRA RN Subject 553 TFTAIR*TFRLCAXXXPHIYRRAMRN 630
Nucleotide Sequence (567 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
404.7 | 1320.2 | 33% | 4.866e-111 | 44% | JQ023131.1 | |
404.7 | 1320.2 | 33% | 4.866e-111 | 44% | NC_016509.1 | |
404.3 | 1160.5 | 28% | 6.686e-111 | 42% | AF195822.1 | |
402.5 | 1354.9 | 33% | 2.382e-110 | 44% | KU674796.1 | |
402.5 | 1365.9 | 33% | 2.382e-110 | 47% | KU674797.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 1050, complete genome
Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 10
Range 1: 6689 to 7234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.7 bits(877) | 0.0 | 165/182(91%) | 0/182(0%) | Minus/Plus |
Query 1 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI 546 IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI Subject 6689 IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI 7234
Range 2: 6688 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
312.2 bits(675) | 0.0 | 153/180(85%) | 0/180(0%) | Plus/Minus |
Query 8 GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM 547 G REKIGSSAFFNLT TTS VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SSANST SLGVTNVFSL +NGI FLSPY TSFTPI TTVN*N+PLC+IYTSS+ Subject 6688 GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSI 7227
Range 3: 6767 to 7000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 40/78(51%) | 0/78(0%) | Plus/Minus |
Query 235 HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV 468 HL +RA RS +P+R H+IR+Q S ISHR +T ISRAPV*N+ +L+ L +F+ F+R DKRLF + + L+LI+V Subject 6767 HLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YVTYISRAPV*NVSVLNQLFREFYGFIRRDKRLFPVDKWYLILISV 7000
Range 4: 7043 to 7234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 34/64(53%) | 0/64(0%) | Plus/Minus |
Query 1 DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH 192 +M LPR+DRI LLQ + +I++ LALRFM HI P R HLR + LHF FILSHC V+ Subject 7043 NMRLPREDRIICLLQSYQYNITIRLALRFMRR*HIWPLFSSRNFHLRNNPLHFCFFILSHCQVN 7234
Range 5: 6689 to 6727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 10/13(77%) | 0/13(0%) | Plus/Minus |
Query 508 LKHALVQHIHLID 546 LKH+L+QHIH ID Subject 6689 LKHSLMQHIHFID 6727
Range 6: 6850 to 7233 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 65/128(51%) | 0/128(0%) | Minus/Plus |
Query 2 ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY 385 AD V+ FIQVP *C+L ++DD*+AR +V EW V * G++T LF +GA +S G FT+*SGC+ +NDSE*K NAE C EDG G + +A C ++ *SARQD+ C ++EEG S L A +Y Subject 6850 AD*VH*HFIQVPC*CMLRIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFTV*SGCLPDNDSE*KSRNAEGCCEDGNCGWKKEARCVNDA*SARQDVW*CCIGKIEEGR*SDLLAEASY 7233
Range 7: 6690 to 6728 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 9/13(69%) | 0/13(0%) | Minus/Plus |
Query 507 SMRCICCTRACFN 545 SM+CICC R CF+ Subject 6690 SMKCICCIRECFS 6728
Range 8: 6768 to 7232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 82/155(53%) | 0/155(0%) | Minus/Plus |
Query 3 TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI 467 T IR R+ KRRLS L N + S S FHTGA LM+V R*LI E C RM C L G DL AL +RC +L R LY MKRM T*Q*LRMK++KCR L RRW R G+MC*+ MKRKAR M * *RR I S RG+ I Subject 6768 TEIRIRYHLSTGKRRLSRLMKP*NSRKS*LSTLTFHTGALLMYVTYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLYCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLEKRGQMC*RRMKRKARRMVMLYW*D*RRQMIRSSRGSLI 7232
Range 9: 6768 to 7082 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 55/105(52%) | 0/105(0%) | Plus/Minus |
Query 153 AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR 467 AF FHSESL HPLH VK P E + AP +KS +V P * T HS T LA QSS N HQ GTCMK + T+SA +I ++ * *QTSF * S SY R Subject 6768 AFLLFHSESLSGKHPLHTVKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIRNIHQQGTCMKCQCTQSALPRILRLH*A*QTSFPC**MVSDSYLR 7082
Grapevine leafroll associated virus 1, complete genome
Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 10
Range 1: 6689 to 7234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.7 bits(877) | 0.0 | 165/182(91%) | 0/182(0%) | Minus/Plus |
Query 1 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI 546 IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI Subject 6689 IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI 7234
Range 2: 6688 to 7227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
312.2 bits(675) | 0.0 | 153/180(85%) | 0/180(0%) | Plus/Minus |
Query 8 GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM 547 G REKIGSSAFFNLT TTS VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SSANST SLGVTNVFSL +NGI FLSPY TSFTPI TTVN*N+PLC+IYTSS+ Subject 6688 GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSI 7227
Range 3: 6767 to 7000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 40/78(51%) | 0/78(0%) | Plus/Minus |
Query 235 HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV 468 HL +RA RS +P+R H+IR+Q S ISHR +T ISRAPV*N+ +L+ L +F+ F+R DKRLF + + L+LI+V Subject 6767 HLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YVTYISRAPV*NVSVLNQLFREFYGFIRRDKRLFPVDKWYLILISV 7000
Range 4: 7043 to 7234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 34/64(53%) | 0/64(0%) | Plus/Minus |
Query 1 DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH 192 +M LPR+DRI LLQ + +I++ LALRFM HI P R HLR + LHF FILSHC V+ Subject 7043 NMRLPREDRIICLLQSYQYNITIRLALRFMRR*HIWPLFSSRNFHLRNNPLHFCFFILSHCQVN 7234
Range 5: 6689 to 6727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 10/13(77%) | 0/13(0%) | Plus/Minus |
Query 508 LKHALVQHIHLID 546 LKH+L+QHIH ID Subject 6689 LKHSLMQHIHFID 6727
Range 6: 6850 to 7233 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 65/128(51%) | 0/128(0%) | Minus/Plus |
Query 2 ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY 385 AD V+ FIQVP *C+L ++DD*+AR +V EW V * G++T LF +GA +S G FT+*SGC+ +NDSE*K NAE C EDG G + +A C ++ *SARQD+ C ++EEG S L A +Y Subject 6850 AD*VH*HFIQVPC*CMLRIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFTV*SGCLPDNDSE*KSRNAEGCCEDGNCGWKKEARCVNDA*SARQDVW*CCIGKIEEGR*SDLLAEASY 7233
Range 7: 6690 to 6728 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 9/13(69%) | 0/13(0%) | Minus/Plus |
Query 507 SMRCICCTRACFN 545 SM+CICC R CF+ Subject 6690 SMKCICCIRECFS 6728
Range 8: 6768 to 7232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 82/155(53%) | 0/155(0%) | Minus/Plus |
Query 3 TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI 467 T IR R+ KRRLS L N + S S FHTGA LM+V R*LI E C RM C L G DL AL +RC +L R LY MKRM T*Q*LRMK++KCR L RRW R G+MC*+ MKRKAR M * *RR I S RG+ I Subject 6768 TEIRIRYHLSTGKRRLSRLMKP*NSRKS*LSTLTFHTGALLMYVTYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLYCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLEKRGQMC*RRMKRKARRMVMLYW*D*RRQMIRSSRGSLI 7232
Range 9: 6768 to 7082 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 55/105(52%) | 0/105(0%) | Plus/Minus |
Query 153 AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR 467 AF FHSESL HPLH VK P E + AP +KS +V P * T HS T LA QSS N HQ GTCMK + T+SA +I ++ * *QTSF * S SY R Subject 6768 AFLLFHSESLSGKHPLHTVKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIRNIHQQGTCMKCQCTQSALPRILRLH*A*QTSFPC**MVSDSYLR 7082
Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds
Sequence ID: AF195822.1 Length: 12394 Number of Matches: 8
Range 1: 492 to 1037 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.3 bits(876) | 0.0 | 161/182(88%) | 0/182(0%) | Minus/Plus |
Query 1 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI 546 IDEVYMLHKGMFQLTVVSMGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+EQI+YTD+SYRCPADVCYVLSSMTD+RGK++YPNGV+PNGD RPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQ+AVAKM++ AGK+RPDV+TTHEAQGKTY +VVLVRLKKA+DPIFSR+PHI Subject 492 IDEVYMLHKGMFQLTVVSMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEEQIDYTDISYRCPADVCYVLSSMTDARGKKMYPNGVFPNGDVRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQKAVAKMEVVAGKKRPDVITTHEAQGKTYENVVLVRLKKADDPIFSRKPHI 1037
Range 2: 491 to 1036 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.0 bits(620) | 0.0 | 142/182(78%) | 0/182(0%) | Plus/Minus |
Query 2 ICGCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM 547 +CG REKIGSSAFF+LT+TT VLPCAS VV TSGL FPA SIFATA CISAFSF*VIV+YTSAS SKASSGVAIGTFS ERRG SP G TPFGY FPR SVI+D+T*QTSAGH E SV SICSSANST S GVTNVFSL MNGIWFLSPY TSFTPI+TTV+*N+PLC+I TSS+ Subject 491 MCGFREKIGSSAFFSLTKTTFSYVLPCAS*VVITSGLFFPATTSIFATAFCISAFSF*VIVRYTSAS*SKASSGVAIGTFSNERRGLTSPFGNTPFGYIFFPRASVIEDKT*QTSAGHR*EMSV*SICSSANSTASFGVTNVFSLLMNGIWFLSPYAITSFTPIETTVS*NIPLCSI*TSSI 1036
Range 3: 492 to 803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 50/104(48%) | 0/104(0%) | Plus/Minus |
Query 235 HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAVXXXXXXXXXXXXQLKHALVQHIHLID 546 HL +RA RS + IR HS+ + + ISHR Q+ITNI V N+ I+ LL+ + H F+ S + L S+ ERNLVL+ V +L H+HR H +LKH+L+ HI+LID Subject 492 HLLERA*RSHVSIREHSVWVHFLSTCISHRRQNITNICWTSVRNVSIIYLLLSELHSFIWSHECLLSVDERNLVLVPVRYHLFHSHRDHSKLKHSLM*HINLID 803
Range 4: 846 to 1037 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 27/64(42%) | 0/64(0%) | Plus/Minus |
Query 1 DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH 192 ++W ++ I LLQ H D + V L LR M HIR LP H +S LHF L +LSH +H Subject 846 NVWFSGENWIIRLLQSHQDHVFVCLTLRLMSSNHIRSFLPSHNFHFCHSLLHFSLLVLSHRQIH 1037
Range 5: 584 to 1036 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 63/151(42%) | 0/151(0%) | Minus/Plus |
Query 2 PDSVHK*RKDVCHS*RICGICR*ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY 454 P+SVH+ R+D+ S CG+ ADR+Y F+ + CLLC V DD* ++ V + SVP W TS L +GA+ ++ FT+*SG V ++DSE +G NAE C ++G G E K GC +* AR D+++ E EEG S TT+ Subject 584 PNSVHQQREDIRDSK*SCGVR*GADRLY*HFLPMSSRCLLCFVFDD*CTWKENVPKRSVPEWRRETSTLVREGADRNAGRRFTL*SGRVSDDDSEREG*NAEGCGKNGSCGWEEKTGCDYYS*GAR*DIRKRGLGETEEGG*SNFLPKTTH 1036
Range 6: 493 to 531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.1 bits(42) | 0.0 | 8/13(62%) | 0/13(0%) | Minus/Plus |
Query 507 SMRCICCTRACFN 545 SMR IC R CF+ Subject 493 SMRFICYIRECFS 531
Range 7: 571 to 1032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 65/154(42%) | 0/154(0%) | Minus/Plus |
Query 6 TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNH 467 T RT+FRS E+R L LW+ SR I F T + MFVM C R*L+ + C + EC+ M DL A +RC+ + + LY MKR C *+*LR +R KCR L ++W G + RM M+RK R T+ S * *RR I NH Subject 571 TGTRTKFRSSTERRHS*LQMKLWSSLRSR*IILTFLTDVQQMFVMFCLR*LMHVERKCTQTECSRMET*DLYARSRRCRSQRRKTLYSMKRTCI*R*LRTRRLKCRRLWQKWKLWLGRKDRM*LLLMRRKVRHTKTWSW*D*RRRMIQFSPENH 1032
Range 8: 571 to 1032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 64/154(42%) | 0/154(0%) | Plus/Minus |
Query 6 VVAAKR*DLQPSSTSLGRHLCRSCLALHVLSAHPAFAXXXXXXXXXXXXAFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR 467 VV ++ D PSS S S LA H +HP F+S P P Q SAF P SES T PLH VK + AP + S EV H GTL T +QSS T HNKH K +Y SA + PQ+ E + S L *TE GS R Subject 571 VVFGRKLDHPPSSVSPRPRFRMSYLAPHE**SHPVFSSQPQLPFLPQPSAFQPSRSESSSDTRPLHRVKRLPALRSAPSRTSVEVSRLHSGTLRLGTFSFHVHQSSKTKHNKHLLDIGKKCQYNLSAPQRTPQLHLESRMSSLC**TEFGSCPR 1032
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 9
Range 1: 6765 to 7310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.5 bits(872) | 0.0 | 164/182(90%) | 0/182(0%) | Minus/Plus |
Query 1 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI 546 IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEF +E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI Subject 6765 IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI 7310
Range 2: 6764 to 7303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
311.7 bits(674) | 0.0 | 152/180(84%) | 0/180(0%) | Plus/Minus |
Query 8 GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM 547 G REKIGSSAFFNLT+TTS VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SS NST SLGVTNVFSL MNGI FLSPY TSFTPI TTVN*N+PLC++YTSS+ Subject 6764 GFREKIGSSAFFNLTKTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSGNSTASLGVTNVFSLLMNGI*FLSPYAITSFTPIATTVN*NIPLCSMYTSSI 7303
Range 3: 6843 to 7310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 84/156(54%) | 0/156(0%) | Plus/Minus |
Query 1 DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VHXXXXXXXXXXXXNWHLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV 468 DM LPR+D I LLQ + ++I++ LALRFM HI P P R HLR + LHF FILSHC V+IRFI S+L S + HL +RA RS +P+R H+IR+Q S I HR IT ISRAPV*N+ +L+ L+ +F+ F+R DKRLF + ER+L+LI+V Subject 6843 DMRLPREDWIIRLLQSYQNNITIRLALRFMRR*HIWPLFPSRNFHLRNNPLHFCFFILSHCQVNIRFIQQSVLWSCDRHLLERA*RSSVPVRKHTIRVQFSSSHIGHRR*YITYISRAPV*NVCVLNQLLREFYSFIRRDKRLFPVDERDLILISV 7310
Range 4: 6765 to 6803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 9/13(69%) | 0/13(0%) | Plus/Minus |
Query 508 LKHALVQHIHLID 546 LKH+LVQH+H I+ Subject 6765 LKHSLVQHVHFIN 6803
Range 5: 6860 to 7309 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 77/150(51%) | 0/150(0%) | Minus/Plus |
Query 2 DSVHK*RKDVCHS*RICGICR*ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY 451 D VH+ KDVCH+* C I AD V+R FIQVP *C+LC ++DD +AR +V EW V * G++T LF +GA +S G F +*SGC+ +NDSE*K NAE C EDG G E +A C ++ *SARQD+ C ++EEG S L A +Y Subject 6860 DPVHQQGKDVCHA**SCRIPGGAD*VHRHFIQVPC*CMLCIIVDDRYARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFAV*SGCLPDNDSE*KSRNAEGCCEDGNCGWEKEARCVNDA*SARQDVW*CCFGKIEEGG*SNLLAEASY 7309
Range 6: 6769 to 6804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 8/12(67%) | 0/12(0%) | Minus/Plus |
Query 507 MRCICCTRACFN 542 M+C CCTR CF+ Subject 6769 MKCTCCTRECFS 6804
Range 7: 6844 to 7308 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 85/155(55%) | 0/155(0%) | Minus/Plus |
Query 3 TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI 467 T IR R RS KRRLS L L N + S S FHTGA LM+VM R* I E C RM C L G DL AL +RC +L R L MKRM T*Q*LRMK++KCR L RRW R G G+MC*+ MKRKAR M * *RR I S RG+ I Subject 6844 TEIRIRSRSSTGKRRLSRLMKL*NSRRS*LSTQTFHTGALLMYVMYYRR*PICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLCCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLGKRGQMC*RRMKRKARRMVMLFW*D*RRRMIQSSRGSLI 7308
Range 8: 6844 to 7158 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 56/105(53%) | 0/105(0%) | Plus/Minus |
Query 153 AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR 467 AF FHSESL HPLH K P E + AP +KS +V P * T HS T LA +SS HN HQ GTCMK T+SA I Q+ * *QTSF *T S SY R Subject 6844 AFLLFHSESLSGKHPLHTAKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYRSSTIIHNIHQQGTCMKCLCTQSAPPGILQLH*A*QTSFPC**TGSDSYLR 7158
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 9
Range 1: 6830 to 7375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.5 bits(872) | 0.0 | 164/182(90%) | 0/182(0%) | Minus/Plus |
Query 1 IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI 546 IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEF +E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI Subject 6830 IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFPEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI 7375
Range 2: 6829 to 7368 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
311.7 bits(674) | 0.0 | 152/180(84%) | 0/180(0%) | Plus/Minus |
Query 8 GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM 547 G REKIGSSAFFNLT+TTS VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SS NST SLGVTNVFSL MNGI FLSPY TSFTPI TTVN*N+PLC++YTSS+ Subject 6829 GFREKIGSSAFFNLTKTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSGNSTASLGVTNVFSLLMNGI*FLSPYAITSFTPIATTVN*NIPLCSMYTSSI 7368
Range 3: 6908 to 7375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 85/156(54%) | 0/156(0%) | Plus/Minus |
Query 1 DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VHXXXXXXXXXXXXNWHLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV 468 +M LPR+DRI LLQ + ++I++ LALRFM C HI P P R HLR + LHF FILSHC V+IRFI S+L S + HL +RA RS +P+R H+IR+Q S ISHR IT +SRAPV*N+ +L+ L+ +F+ F+R DKRLF + ER+L+LI+V Subject 6908 NMRLPREDRIIGLLQSYQNNITIRLALRFMRC*HIWPLFPSRNFHLRNNPLHFCFFILSHCQVNIRFIQQSVLWSCDRHLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YITYVSRAPV*NVCVLNQLLREFYSFIRRDKRLFPVDERDLILISV 7375
Range 4: 6830 to 6868 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 9/13(69%) | 0/13(0%) | Plus/Minus |
Query 508 LKHALVQHIHLID 546 LKH+LVQH+H I+ Subject 6830 LKHSLVQHVHFIN 6868
Range 5: 6925 to 7374 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 78/150(52%) | 0/150(0%) | Minus/Plus |
Query 2 DSVHK*RKDVCHS*RICGICR*ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY 451 D VH+ KDVCH+* C I AD V+R FIQVP * +LC ++DD*+AR +V EW V * G++T LF +GA +S G F +*SGC+ +NDSE*K NAE C EDG G E +A C +N *SARQD+ C ++EEG S L A +Y Subject 6925 DPVHQQGKDVCHA**SCRIPGGAD*VHRHFIQVPC*RMLCIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFAV*SGCLPDNDSE*KSRNAEGCCEDGNCGWEKEARCVNNA*SARQDVW*CCFGKIEEGR*SDLLAEASY 7374
Range 6: 6834 to 6869 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 8/12(67%) | 0/12(0%) | Minus/Plus |
Query 507 MRCICCTRACFN 542 M+C CCTR CF+ Subject 6834 MKCTCCTRECFS 6869
Range 7: 6909 to 7373 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 86/155(55%) | 0/155(0%) | Minus/Plus |
Query 3 TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI 467 T IR R RS KRRLS L L N + S S FHTGA L +VM R*LI E C RM C L G DL AL +RC +L R L MKRM T*Q*LRMK++KCR L RRW R G G+MC*Q MKRKAR M * *RR I S RG+ I Subject 6909 TEIRIRSRSSTGKRRLSRLMKL*NSRRS*LSTQTFHTGALLTYVMYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLCCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLGKRGQMC*QRMKRKARRMVMLFW*D*RRPMIRSSRGSLI 7373
Range 8: 6909 to 7223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 56/105(53%) | 0/105(0%) | Plus/Minus |
Query 153 AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR 467 AF FHSESL HPLH K P E + AP +KS +V P * T HS T LA QSS HN Q GTCMK T+SA I Q+ * *QTSF *T S SY R Subject 6909 AFLLFHSESLSGKHPLHTAKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIHNIRQQGTCMKCLCTQSAPPGILQLH*A*QTSFPC**TGSDSYLR 7223
Nucleotide Sequence (383 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
160.5 | 1222.9 | 81% | 8.927e-38 | 65% | KU674797.1 | |
153.2 | 1203.7 | 81% | 1.438e-35 | 65% | KU674796.1 | |
144.9 | 1202.8 | 80% | 4.37e-33 | 66% | EF103901.1 | |
89.5 | 772.2 | 42% | 1.5e-26 | 49% | AF195822.1 |
Alignments
Grapevine leafroll associated virus 1 isolate WA PN, complete genome
Sequence ID: KU674797.1 Length: 18946 Number of Matches: 12
Range 1: 9697 to 9969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 74/91(81%) | 0/91(0%) | Plus/Minus |
Query 3 IW*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NIL*NTLHR 275 IW HHFTIKL+Y*RGIE+TGIY L*H+M FVIASLN KA*T KP*R* VS LH YRN CSY L AVI DSSTRGH+RPG*S*NIL*NTL R Subject 9697 IWRHHFTIKLDY*RGIEVTGIYGL*HVMPFVIASLNNKA*TRKP*R*RVSALHLYRN*CSYFLRAVI*DSSTRGHQRPG*S*NIL*NTLTR 9969
Range 2: 9664 to 9969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 66/102(65%) | 0/102(0%) | Minus/Plus |
Query 3 VIVYILGPPRSSMKGVLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSPN 308 +IVY ++ GVLE I GSP S M T *RVLD+ *+VAA++TI+MQ+RN LALRF+CLCFI+*RCYH+ H+ML+AINAGHFYS I KFY EVVSPN Subject 9664 IIVYCAHYSVNTC*GVLEYILGSPRSLMATR*RVLDNRA*EVAALITIQMQSRNALALRFSCLCFII*RCYHEWHNMLEAINAGHFYSALIIKFYSEVVSPN 9969
Range 3: 9698 to 9970 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 68/91(75%) | 0/91(0%) | Plus/Minus |
Query 2 NLVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLKHPSS 274 NL TPLH+KT*+LT NR+DRHL PLT +AI DSIFK *SIDK TLTLTRFGSAFVS*L+QL PTR + LFN W SKT VILKY+LKHP++ Subject 9698 NLATPLHYKT*LLTRNRSDRHLWPLTCYAIRDSIFK**SIDKKTLTLTRFGSAFVS*LMQLLPTRGYLGLFNAWPSKTGVILKYTLKHPNT 9970
Range 4: 9695 to 9970 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 67/92(73%) | 0/92(0%) | Minus/Plus |
Query 2 LR*RVF*RIFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVKWCHQI 277 +R RVF* IF DHPGL PRVEES +TA R *L *LRY+CR ET *R*G LVYAL FKDAITN + C*R *MPV SIPR SSF+VKWC QI Subject 9695 IRVRVF*SIF*DHPGL*WPRVEES*ITARRK*LH*LRYKCRAETR*R*GFLVYALLFKDAITNGITC*RP*MPVTSIPR**SSFIVKWCRQI 9970
Range 5: 9705 to 9971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 62/89(70%) | 0/89(0%) | Plus/Minus |
Query 1 KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKTP 267 KFGDTTS *NL I+ E*K*PAF+A N+ C+ **HL* IKHRQ NLNAN+FR CI IV AATSY S+TLQ V I+D+GDP+I+SKTP Subject 9705 KFGDTTSL*NLIINAE*K*PAFMASNMLCHS**HL*IIKHRQENLNANAFRLCICIVINAATSYARLSRTLQRVAIKDRGDPKIYSKTP 9971
Range 6: 9705 to 9971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 67/89(75%) | 0/89(0%) | Minus/Plus |
Query 1 GCFREYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVKVXXXXXXXXXXXSQIA*YVKGYKCRSFLFHVNIQVLW*SGVTKF 267 GCFR YFRIT VFD H LKS * RVG SC +YDTNAEPKRVSVKV+LSMLY LKMLS++A*+V+G+KCRS LF VN QVL *SGV KF Subject 9705 GCFRVYFRITPVFDGHALKSPR*PRVGSSCINYDTNAEPKRVSVKVFLSMLYYLKMLSRMA*HVRGHKCRSLLFRVNNQVL**SGVAKF 9971
Range 7: 9636 to 9746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 27/37(73%) | 0/37(0%) | Plus/Minus |
Query 271 IEDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA 381 I+DRG PKIY+ TP*H+FTL* A YT+I LP PPKEA Subject 9636 IKDRGDPKIYSKTP*HVFTL*CAQYTIIFLPDPPKEA 9746
Range 8: 9635 to 9745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 28/37(76%) | 0/37(0%) | Plus/Minus |
Query 272 SKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP 382 SKTGV+LKYTL PNTYLHY TL*YSYQ L KKP Subject 9635 SKTGVILKYTLKHPNTYLHYNAHNTL*YSYQTLLKKP 9745
Range 9: 9634 to 9747 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 29/38(76%) | 0/38(0%) | Minus/Plus |
Query 270 LASLGGPGKSIIVYRAVYSVNMC*GVIVYILGPPRSSM 383 LASLGG GK+IIVY A YSVN C*GV+ YILG PRS M Subject 9634 LASLGGSGKNIIVYCAHYSVNTC*GVLEYILGSPRSLM 9747
Range 10: 9636 to 9746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 27/37(73%) | 0/37(0%) | Minus/Plus |
Query 271 GFFGRAW*EYHSV*GRL*CKYVLGRYSVYFRTTPVFD 381 GFF R W*EY+SV L*CKYVLG + VYFR TPVFD Subject 9636 GFFRRVW*EYYSVLCAL*CKYVLGCFRVYFRITPVFD 9746
Grapevine leafroll associated virus 1 isolate WA CH, complete genome
Sequence ID: KU674796.1 Length: 18731 Number of Matches: 12
Range 1: 9410 to 9715 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 73/102(72%) | 0/102(0%) | Plus/Minus |
Query 2 NLVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLKHPSSKTGVVLKYTL* 307 NL TPLH KT*+LT NRNDRHL PLT HAI DS FKL SIDK TLTLTRFGSAFV *L QL TR + LFN WSSKT VILKY+LKHP++ L YTL* Subject 9410 NLATPLHRKT*LLTRNRNDRHLWPLTCHAIRDSTFKLQSIDKKTLTLTRFGSAFVL*LTQLLSTRSYLGLFNAWSSKTGVILKYTLKHPNTYLHYNLHYTL* 9715
Range 2: 9409 to 9714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 67/102(66%) | 0/102(0%) | Minus/Plus |
Query 3 VIVYILGPPRSSMKGVLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSPN 308 +IVY ++ GVLE I GSP S TT *RVLD+ * VAA++TI+MQ+RN LALRF+CLCF++*RCYH+ HDML+AINAGHFYS I KFYGEVVSPN Subject 9409 IIVYSADYSVNTC*GVLEYILGSPRSLKTTR*RVLDNCA*KVAALITIQMQSRNALALRFSCLCFVI*RCYHEWHDMLEAINAGHFYSALIIKFYGEVVSPN 9714
Range 3: 9442 to 9714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 71/91(78%) | 0/91(0%) | Plus/Minus |
Query 3 IW*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NIL*NTLHR 275 IW HHFT+KL+Y*RGIEMTGIY L*H+M FVIA LNYKA*T KP*R* VS LH Y N SY L AVI DSSTRG +RPG*S*NIL*NTL R Subject 9442 IWRHHFTVKLDY*RGIEMTGIYGL*HVMPFVIAPLNYKA*TRKP*R*RVSALHLYCN*RSYFLRAVI*DSSTRGLQRPG*S*NIL*NTLTR 9714
Range 4: 9450 to 9716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 62/89(70%) | 0/89(0%) | Plus/Minus |
Query 1 KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKTP 267 KFGDTTSP*NL I+ E*K*PAF+A N+SC+ **HL* KHRQ NLNAN+FR CI IV AAT Y S+TLQ VV +D+GDP+I+SKTP Subject 9450 KFGDTTSP*NLIINAE*K*PAFMASNMSCHS**HL*ITKHRQENLNANAFRLCICIVINAATFYAQLSRTLQRVVFKDRGDPKIYSKTP 9716
Range 5: 9440 to 9715 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 68/92(74%) | 0/92(0%) | Minus/Plus |
Query 2 LR*RVF*RIFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVKWCHQI 277 +R RVF* IF DHPGL PRVEES +TA R *L+*L+Y+CR ET *R*G LVYAL*FK AITN M C*R *MPVISIPR SSF VKWC QI Subject 9440 IRVRVF*SIF*DHPGL*RPRVEES*ITARRK*LR*LQYKCRAETR*R*GFLVYAL*FKGAITNGMTC*RP*MPVISIPR**SSFTVKWCRQI 9715
Range 6: 9411 to 9716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 68/102(67%) | 0/102(0%) | Minus/Plus |
Query 1 YSVYFRTTPVFDEGCFREYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVKVXXXXXXXXXXXSQIA*YVKGYKCRSFLFHVNIQVLW*SGVTKF 306 YSV R + GCFR YFRIT VF+DH LKS * RV SC +Y+TNAEPKRVSVKV+LSML +LK+LS++A*+V+G+KCRSFLF VN QVL *SGV KF Subject 9411 YSV*CRL*CKYVLGCFRVYFRITPVFEDHALKSPR*LRVESSCVNYNTNAEPKRVSVKVFLSMLCNLKVLSRMA*HVRGHKCRSFLFRVNNQVLR*SGVAKF 9716
Range 7: 9380 to 9493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 28/38(74%) | 0/38(0%) | Plus/Minus |
Query 269 SSKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP 382 SSKTGV+LKYTL PNTYLHY YTL*YSY+ L KP Subject 9380 SSKTGVILKYTLKHPNTYLHYNLHYTL*YSYRTLL*KP 9493
Range 8: 9381 to 9488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 26/36(72%) | 0/36(0%) | Plus/Minus |
Query 274 EDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA 381 +DRG PKIY+ TP*H+FTL*+ALYT+I LP PP EA Subject 9381 KDRGDPKIYSKTP*HVFTL*SALYTIIFLPDPPIEA 9488
Range 9: 9379 to 9486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 27/36(75%) | 0/36(0%) | Minus/Plus |
Query 276 LASLGGPGKSIIVYRAVYSVNMC*GVIVYILGPPRS 383 LAS+GG GK+IIVY A YSVN C*GV+ YILG PRS Subject 9379 LASIGGSGKNIIVYSADYSVNTC*GVLEYILGSPRS 9486
Range 10: 9381 to 9494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 26/38(68%) | 0/38(0%) | Minus/Plus |
Query 268 GFFGRAW*EYHSV*GRL*CKYVLGRYSVYFRTTPVFDE 381 GF+ R *EY+SV* RL*CKYVLG + VYFR TPVF++ Subject 9381 GFYRRVR*EYYSV*CRL*CKYVLGCFRVYFRITPVFED 9494
Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds
Sequence ID: EF103901.1 Length: 5715 Number of Matches: 12
Range 1: 3125 to 3385 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.9 bits(310) | 0.0 | 62/87(71%) | 0/87(0%) | Minus/Plus |
Query 6 GVLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSP 266 GVLENI SP SSMTT *RVLD+ *+VAAIVT++MQ+R+ LALRF+CLCFIV*RC+H+ +D +KA+NAGH YS +FKFYGEVVSP Subject 3125 GVLENILRSPRSSMTTR*RVLDNSA*EVAAIVTLQMQSRSALALRFSCLCFIV*RCHHEWYDEVKAMNAGHLYSALMFKFYGEVVSP 3385
Range 2: 3122 to 3385 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 65/88(74%) | 0/88(0%) | Plus/Minus |
Query 6 W*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NIL*NTL 269 W HHFTIKLE+*RGIEMTGI+ L ++ FV+ASL+YKA*T KP R S LH NYCSY+L AVI DSSTRGHRRPG*S*NIL*NTL Subject 3122 WRHHFTIKLEH*RGIEMTGIHCLHLVIPFVMASLDYKA*TRKPQRQRASALHL*CNYCSYLLRAVI*DSSTRGHRRPG*S*NIL*NTL 3385
Range 3: 3124 to 3390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 65/89(73%) | 0/89(0%) | Plus/Minus |
Query 1 KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKTP 267 K GDTTSP*NLNI+ E*+*PAFIAF S + * HL*TIKHRQ NLNAN+ R CI VTIAATSY S+TLQ VVIED+GD +IFSKTP Subject 3124 KIGDTTSP*NLNINAE*R*PAFIAFTSSYHS*WHL*TIKHRQENLNANALRLCICNVTIAATSYALLSRTLQRVVIEDRGDLKIFSKTP 3390
Range 4: 3123 to 3386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 67/88(76%) | 0/88(0%) | Minus/Plus |
Query 5 RVF*RIFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVKWCHQ 268 +VF*RIF DHPGLR*PRVEES +TA R *LQ*L Y+CR E R*G LVYAL* KDAITN M *R *MPVISIPR SSFMVKWC Q Subject 3123 KVF*RIF*DHPGLR*PRVEES*ITARRR*LQ*LHYKCRAEARWR*GFLVYAL*SKDAITNGMTR*RQ*MPVISIPR*CSSFMVKWCRQ 3386
Range 5: 3084 to 3386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 67/101(66%) | 0/101(0%) | Plus/Minus |
Query 5 LVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLKHPSSKTGVVLKYTL* 307 L TPLHHKT* LT NR+DRH P H I D IF+L*SIDK T T TRFGSAFV *LLQL PTR + LFN WSSKT VILKYSLKH + YTL* Subject 3084 LATPLHHKT*TLTRNRDDRHSLPSPRHTIRDGIFRL*SIDKKTSTPTRFGSAFVM*LLQLPPTRCYLGLFNAWSSKTGVILKYSLKHLNMYLHYKRHYTL* 3386
Range 6: 3127 to 3390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 63/88(72%) | 0/88(0%) | Minus/Plus |
Query 1 CFREYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVKVXXXXXXXXXXXSQIA*YVKGYKCRSFLFHVNIQVLW*SGVTKF 264 CFREYF+IT VFDDH LKS *+RVG SCNSY TNAEPKRV V+V+LSMLYSLKM S++ * +G +CRS LF VN+QVLW*SGV F Subject 3127 CFREYFKITPVFDDHALKSPR*QRVGGSCNSYITNAEPKRVGVEVFLSMLYSLKMPSRMV*RGEGNECRSSLFRVNVQVLW*SGVANF 3390
Range 7: 3054 to 3167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 29/38(76%) | 0/38(0%) | Plus/Minus |
Query 269 SSKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP 382 SSKTGV+LKY+L N YLHYKR YTL* SYQ LPKKP Subject 3054 SSKTGVILKYSLKHLNMYLHYKRHYTL*NSYQTLPKKP 3167
Range 8: 3054 to 3167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 30/38(79%) | 0/38(0%) | Minus/Plus |
Query 269 WLLWEGLVRVS*CIGPFIV*ICVRAL*CIF*DHPGLR* 382 WLLWEGLVR+ *CI PFIV*I V+ * IF*DHPGLR* Subject 3054 WLLWEGLVRIL*CIVPFIV*IHVKVF*RIF*DHPGLR* 3167
Range 9: 3053 to 3166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 30/38(79%) | 0/38(0%) | Plus/Minus |
Query 270 HRRPGWS*NIHYNALTHIYTINGPIHYDTLTRPSQRSQ 383 HRRPG S*NI N LT IYTING IHY LTRPSQRSQ Subject 3053 HRRPG*S*NIL*NTLTCIYTINGTIHYKILTRPSQRSQ 3166
Range 10: 3055 to 3165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 27/37(73%) | 0/37(0%) | Plus/Minus |
Query 271 IEDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA 381 IEDRG KI++ TP*H+FTL*TALYT+ LP PPKEA Subject 3055 IEDRGDLKIFSKTP*HVFTL*TALYTIKFLPDPPKEA 3165
Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds
Sequence ID: AF195822.1 Length: 12394 Number of Matches: 13
Range 1: 3214 to 3462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 46/83(55%) | 0/83(0%) | Plus/Minus |
Query 6 W*HHFTIKLEY*RGIEMTGIYSL*HIMQFVIASLNYKA*TSKP*R*LVSVLHSYRNYCSYVLHAVIQDSSTRGHRRPG*S*NI 254 W HFT EY* G + T I +L ++ FV ASL YKA T P* * +S L R+Y SY+L AVI D STRGHRRP *+*NI Subject 3214 WQLHFTTIYEY*HGKDSTDIDTLKRVIPFVKASLYYKAKTRNP*Y*RISALRLQRSYRSYLLRAVIDDPSTRGHRRPE*T*NI 3462
Range 2: 3100 to 3216 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 23/39(59%) | 0/39(0%) | Plus/Minus |
Query 267 LHRRPGWS*NIHYNALTHIYTINGPIHYDTLTRPSQRSQ 383 +H PG NIH N L IY IN +HY LTRPSQRSQ Subject 3100 IHYDPG*HWNIH*NTLIRIYKINDTVHYIVLTRPSQRSQ 3216
Range 3: 3205 to 3465 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 43/87(49%) | 0/87(0%) | Minus/Plus |
Query 3 VLENISGSPWSSMTTC*RVLDDGV*DVAAIVTIRMQNRNELALRFTCLCFIV*RCYHKLHDMLKAINAGHFYSTSIFKFYGEVVSPN 263 V+ NI G WSSM *RV+DD *+VAAI T+ Q L LR +CL FIV*RC+H+ ++ K+IN G +S IF + GEV P+ Subject 3205 VVVNILGLLWSSMAAR*RVVDDRA*EVAAIATL*TQC*YALVLRVSCLRFIV*RCFHERYNAFKSINVGTIFSVLIFIYCGEVKLPS 3465
Range 4: 3101 to 3205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 21/35(60%) | 0/35(0%) | Minus/Plus |
Query 278 WLLWEGLVRVS*CIGPFIV*ICVRAL*CIF*DHPG 382 WL WEGLVR *C FI+*I +R *CIF +PG Subject 3101 WLRWEGLVRTI*CTVSFIL*IRIRVF*CIFQCYPG 3205
Range 5: 3204 to 3467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 43/88(49%) | 0/88(0%) | Plus/Minus |
Query 1 KFGDTTSP*NLNIDVE*K*PAFIAFNISCNL**HL*TIKHRQVNLNANSFRFCIRIVTIAATSYTPSSKTLQHVVIEDQGDPEIFSKT 264 K G+ TSP +NI+ E P I N * HL TIK RQ LN N+++ C+ V IAATSY SS TLQ IEDQ P IF+ T Subject 3204 KLGNFTSPQYMNINTEKIVPTLILLNALYRS*KHLYTIKRRQETLNTNAYQHCVYNVAIAATSYARSSTTLQRAAIEDQSKPRIFTTT 3467
Range 6: 3102 to 3215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 19/38(50%) | 0/38(0%) | Plus/Minus |
Query 268 FIEDRGGPKIYTITP*HIFTL*TALYTMILLPGPPKEA 381 F RG IYT TP*++FT * L ++ LP PP EA Subject 3102 FTTTRGNTGIYTKTP*YVFTK*MILCIILFLPDPPNEA 3215
Range 7: 3206 to 3466 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 47/87(54%) | 0/87(0%) | Plus/Minus |
Query 2 NLVTPLHHKT*ILTWNRNDRHL*PLTYHAICDSIFKL*SIDK*TLTLTRFGSAFVS*LLQLRPTRRHPRLFNTWSSKTRVILKYSLK 262 NL T LHH *ILT R RH T + + +SIF L*S DK L LT +AF +*L QL PTR H R FN SKTRV L+YSL+ Subject 3206 NLATSLHHNI*ILTRKR*YRH*YS*TRYTVRESIFIL*SEDKKPLILTHISTAFTT*LSQLPPTRGHRRPFNARPSKTRVNLEYSLR 3466
Range 8: 3101 to 3214 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 20/38(53%) | 0/38(0%) | Plus/Minus |
Query 269 SSKTGVVLKYTL*RPNTYLHYKRPYTL*YSYQALPKKP 382 S + GV L+YTL P+TYL K L SYQ LP KP Subject 3101 SLRPGVTLEYTLKHPDTYLQNK*YCALYCSYQTLPTKP 3214
Range 9: 3215 to 3451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 41/79(52%) | 0/79(0%) | Minus/Plus |
Query 17 IFQDHPGLR*PRVEESWMTACRT*LQ*LRYECRTETS*R*GLLVYAL*FKDAITNCMIC*RL*MPVISIPRQYSSFMVK 253 IF + GLR PRVE S MTA R *L+*LR + + * *G LV+AL*+KDA TN + R+ M V+S P YS +VK Subject 3215 IF*VYSGLRWPRVEGSSMTARRR*LR*LRCKRSADMR*Y*GFLVFAL*YKDAFTNGITRLRVSMSVLSFPC*YSYIVVK 3451
Range 10: 3102 to 3203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 18/34(53%) | 0/34(0%) | Minus/Plus |
Query 280 GFFGRAW*EYHSV*GRL*CKYVLGRYSVYFRTTP 381 GF GR W*E ++ L CKYV G +SVY TP Subject 3102 GFVGRVW*EQYNAQYHLFCKYVSGCFSVYSSVTP 3203
Range 11: 3213 to 3335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 23/41(56%) | 0/41(0%) | Minus/Plus |
Query 133 EYFRITLVFDDHVLKSLG*RRVGRSCNSYDTNAEPKRVSVK 255 EY R TLVFD LK * RVG SC+SY NA VS+K Subject 3213 EYSRFTLVFDGRALKGRR*PRVGGSCDSYVVNAVLICVSIK 3335