Queries
Nucleotide Sequence (894 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
692.5 | 3850.5 | 30% | 0 | 87% | NC_004667 | |
177.9 | 619.5 | 23% | 4.217e-79 | 33% | NC_022072 | |
114.2 | 165.3 | 17% | 1.697e-24 | 38% | NC_003604 | |
128.0 | 204.8 | 23% | 2.44e-36 | 23% | NC_016509 | |
85.8 | 217.9 | 12% | 1.258e-24 | 46% | NC_011702 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 4905 to 5768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
692.5 bits(1505) | 0.0 | 284/288(99%) | 0/288(0%) | Plus/Plus |
Query 30 SGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY 893 SGWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY Subject 4905 SGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY 5768
Range 2: 4903 to 5769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
649.4 bits(1411) | 0.0 | 283/289(98%) | 0/289(0%) | Plus/Plus |
Query 28 YQGGLVS*RIS*RQLSTQASLTIV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TLSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRT 894 +QGGLV *RIS*RQLSTQAS T V*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*T STKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRT Subject 4903 HQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRT 5769
Range 3: 4901 to 5767 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
645.8 bits(1403) | 0.0 | 284/289(98%) | 0/289(0%) | Minus/Minus |
Query 26 YGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHHIEYVDXXXXXXXXXSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDK 892 YGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SG RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSS+EFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHL+EKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR RGHPD+ Subject 4901 YGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDE 5767
Range 4: 5334 to 5768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
356.2 bits(771) | 0.0 | 144/145(99%) | 0/145(0%) | Minus/Minus |
Query 459 VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST 893 VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST Subject 5334 VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST 5768
Range 5: 4914 to 5291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.9 bits(622) | 0.0 | 121/126(96%) | 0/126(0%) | Minus/Minus |
Query 39 IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTR 416 IRHAAG*LQHPAYTKDAPSCPERQTDAPFVD VY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPAL+REVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*T+V+DAWVLNCR*DIL* TR Subject 4914 IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTR 5291
Range 6: 5095 to 5769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
508.8 bits(1104) | 0.0 | 223/225(99%) | 0/225(0%) | Minus/Minus |
Query 220 RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV*EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR*SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT 894 RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT Subject 5095 RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT 5769
Range 7: 4888 to 5049 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 47/54(87%) | 0/54(0%) | Minus/Minus |
Query 13 GYLMDSTPRHQRGMVRLHPSCTSALNNGQRRLGT*LPLRYPLGHEATLINAQTH 174 GYLMDSTPRHQRGMVRLHPSCTSALN+G+RRLGT*LPLRYPLGHEATL+ H Subject 4888 GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMKHGYH 5049
Range 8: 4901 to 5356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
355.7 bits(770) | 0.0 | 150/152(99%) | 0/152(0%) | Plus/Plus |
Query 26 FIRVASCPRGYLNGN*VPKRL*PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLYRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT 481 FIRVASCPRGYLNGN*VPKRL PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKL+RRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT Subject 4901 FIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT 5356
Range 9: 5408 to 5650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 81/81(100%) | 0/81(0%) | Plus/Plus |
Query 533 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC 775 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC Subject 5408 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC 5650
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 6434 to 6832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 70/133(53%) | 0/133(0%) | Plus/Plus |
Query 495 KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY 893 K SE + R + STY++W EQD+V KC+WL+AD+P++AL+P M FE V T T+EDA +EYLKY AIGIER Y A + IAV A+GVLK P Q YE LPG YK + ++H T+DGLR+ D+PY Subject 6434 KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPY 6832
Range 2: 5948 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 60/110(55%) | 0/110(0%) | Plus/Plus |
Query 33 GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRAT 362 GWP VL++I+ Y FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F +C+ VAS D F+M GFQR + H+V S EGRISLTFR+T Subject 5948 GWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST 6277
Range 3: 6001 to 6276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 48/92(52%) | 0/92(0%) | Minus/Minus |
Query 86 VALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSK 361 V LNVKL+ PS E T C +L*KP I S EAT LH + K A P TV IGLS G*H S SAWN PP Y TKQWSK Subject 6001 VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK 6276
Range 4: 6496 to 6768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 49/91(54%) | 0/91(0%) | Minus/Minus |
Query 557 L*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCS 829 L* KPG+ S* G F TP A +TAI L NALY LS+PIA YF+YS ASS V V T S I G RA G SA + SH +T SCS Subject 6496 L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCS 6768
Range 5: 6446 to 6832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 42/129(33%) | 0/129(0%) | Minus/Minus |
Query 507 VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSL 893 +R ++ QA+L + N + LV+ +AR ++L R Q+TF S GN++ +R V PLN +LQVL I P + K H KS + IIS +P+ L + +L P + P P L Subject 6446 IRYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL 6832
Range 6: 5963 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 35/105(33%) | 0/105(0%) | Minus/Minus |
Query 48 SCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL* 362 S PE QTD+ + M V PLK H K + RS+ T+ L E+C+ + R V+ +A +ISVE Y +T+ +LL+ MV+ V D++* Subject 5963 SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV* 6277
Range 1: 1959 to 2291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 45/111(41%) | 0/111(0%) | Plus/Plus |
Query 24 RLSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR 356 R GW L ++ + +DHCL+Q+Y GG + FHADDE CY ++TVNL G A F +K + GK+ + GD ++M G Q+TH H V S +GR S+T R Subject 1959 RSLGWDEALNELTQELGLDDSYDHCLIQRYTAGGSIGFHADDEPCYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGMQQTHKHRVTSHTDGRCSITLR 2291
Range 2: 2030 to 2284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 32/85(38%) | 0/85(0%) | Minus/Minus |
Query 95 VKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQ 349 V L RPS E T C V P I SP + P K A P +LTV *H SSSAWN PP +Y +Q Subject 2030 VMLQRPSV*EVTLCL*VCCIPGPITYTSPSCSSFFSIFPD*FSFTSKVASPCKLTVTTEPPGR*HGSSSAWNPILPPAVYLWIRQ 2284
Grapevine leafroll-associated virus 1, complete genome
Range 1: 5393 to 5716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 48/108(44%) | 0/108(0%) | Plus/Plus |
Query 33 GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR 356 GW + L+++ +K +DHCL+QKY+ G + FHADDE+CY S ++TVNL G+A F ++ K G+++ + GD F+M G QR HSV S+DEGR+S+T R Subject 5393 GWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR 5716
Range 2: 6164 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 15/38(39%) | 0/38(0%) | Plus/Plus |
Query 780 KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY 893 K P VYE+LPG VY + ++ ++ +DG + DL Y Subject 6164 KFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEY 6277
Range 3: 5867 to 6157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 22/97(23%) | 0/97(0%) | Plus/Plus |
Query 486 SGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV 776 S S + R+ +ST E + K W+ ++PV+ ++ + + +KT +E +E++ YLA + L AR++ T + V Subject 5867 SSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV 6157
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 5203 to 5355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 31/51(61%) | 0/51(0%) | Plus/Plus |
Query 81 SVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKG 233 S+FDHCL+QKY G G+PFH D+E YP NPILT++L G+ FSIKC G Subject 5203 SMFDHCLIQKYNRGAGIPFHKDNEPVYPIGNPILTIHLSGEGMFSIKCGTG 5355
Range 2: 5386 to 5448 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 15/21(71%) | 0/21(0%) | Plus/Plus |
Query 270 YFLMPCGFQRTHLHSVNSIDE 332 +FLMPCGFQ+THLHSV E Subject 5386 WFLMPCGFQKTHLHSVTCSSE 5448
Range 3: 5449 to 5484 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 8/12(67%) | 0/12(0%) | Plus/Plus |
Query 336 RISLTFRATRRV 371 R+SLTFRAT+++ Subject 5449 RVSLTFRATQQL 5484
Nucleotide Sequence (300 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
230.2 | 1300.4 | 44% | 4.632e-60 | 99% | NC_004667 | |
138.5 | 221.6 | 49% | 1.789e-32 | 58% | NC_022072 | |
94.5 | 149.2 | 44% | 3.122e-19 | 46% | NC_029783 | |
79.9 | 147.4 | 40% | 8.096e-15 | 47% | NC_001836 | |
80.3 | 135.5 | 21% | 5.893e-15 | 58% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10660 to 10956 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 98/99(99%) | 0/99(0%) | Minus/Plus |
Query 3 Y*RFLILGEGLSSSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNW 299 Y*RFLILGEGLS+SHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNW Subject 10660 Y*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNW 10956
Range 2: 10660 to 10956 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.8 bits(493) | 0.0 | 99/99(100%) | 0/99(0%) | Plus/Minus |
Query 3 PVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLI 299 PVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLI Subject 10660 PVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLI 10956
Range 3: 10659 to 10958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.9 bits(491) | 0.0 | 99/100(99%) | 0/100(0%) | Minus/Plus |
Query 1 LLAVFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELD 300 LLAVFDFGGGTF VSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELD Subject 10659 LLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELD 10958
Range 4: 10659 to 10958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 99/100(99%) | 0/100(0%) | Plus/Minus |
Query 1 VQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DDESPSPKIKNR** 300 VQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*D ESPSPKIKNR** Subject 10659 VQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR** 10958
Range 5: 10661 to 10909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 82/83(99%) | 0/83(0%) | Plus/Minus |
Query 50 GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETTKVPPPKSKTAN 298 GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNET+KVPPPKSKTAN Subject 10661 GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTAN 10909
Range 6: 10661 to 10909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.2 bits(411) | 0.0 | 83/83(100%) | 0/83(0%) | Minus/Plus |
Query 50 ISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP 298 ISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP Subject 10661 ISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP 10909
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11627 to 11923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 57/99(58%) | 0/99(0%) | Minus/Plus |
Query 4 LLAVFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDEL 300 L+AVFDFGGGTF VSFVKKKG+IL V++S GDNFLGGRDID A+ +K+K+ G KL FVS++KED+SN+ ++ H++P G E+V LT EL Subject 11627 LIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAEL 11923
Range 2: 11632 to 11847 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 42/72(58%) | 0/72(0%) | Plus/Minus |
Query 80 LDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETTKVPPPKSKTA 295 LD SS I DT +L P F L A SISLPPKKLSP E T I PFFLT +T+KVPPPKSKTA Subject 11632 LDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTA 11847
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 10865 to 11119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 39/85(46%) | 0/85(0%) | Minus/Plus |
Query 37 VFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 291 VFDFGGGTF +S + K+G +L VI + GDN+LGGRD+D I++ I ++ + I VS MKE +S+ A T+ +IP+E G Subject 10865 VFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG 11119
Range 1: 9179 to 9394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 34/72(47%) | 0/72(0%) | Minus/Plus |
Query 76 VFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNN 291 VFDFGGGTF VS++KK G I+ +I + GD FLGGRDID+A+ E I QK D + ++ +S N Subject 9179 VFDFGGGTFDVSYIKKHGKIVSIIDTAGDLFLGGRDIDKALAEFISQKTGHSCDDLFINHLKETVTPGVSKN 9394
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10444 to 10590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 30/49(61%) | 0/49(0%) | Minus/Plus |
Query 148 AVFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK 294 AVFDFGGGT +SF+ + N++ V+FS GDNFLGGRDIDRAIV+ ++++ Subject 10444 AVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE 10590
Nucleotide Sequence (369 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 960 to 1304 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
269.1 bits(581) | 0.0 | 103/115(90%) | 0/115(0%) | Plus/Plus |
Query 7 IARGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMHMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPRAPNT 351 I RGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTT+GWCWFNNERLRGEIYRRRCFSSSFS+GFLMH+GFRSLK +RFAGTNILH+PSLNEERTFGWK DVYLP P T Subject 960 IVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFSIGFLMHLGFRSLKVIRFAGTNILHMPSLNEERTFGWKGGDVYLPNVPKT 1304
Range 2: 960 to 1298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 92/113(81%) | 0/113(0%) | Minus/Minus |
Query 7 WCPGEINICALPPKGALFIERWYV*YVRARKPDGFQRSKAHVHQETYRKGR*EATASINFSPQPFVIKPTPPSGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPSPRN 345 W GEI++ ALPPKG LFIE W+V*YVRARKP+ RSKA VHQETYRKGR*EAT S+NFSPQP ++KPTPP GGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSP+P N Subject 960 WDIGEIDVSALPPKGTLFIE*WHV*YVRARKPNDL*RSKAKVHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPTPHN 1298
Range 3: 959 to 1309 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 107/117(91%) | 0/117(0%) | Minus/Minus |
Query 6 LGVFGALGR*TSALFHPKVRSSLSDGMCSMFVPANLTAFNDLKPMCIKKPTEKEDEKQRRXXXXXXXXXXLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRAI 356 + VFG LGR*TS FHPKVRSSLSDGMCSMFVPANL FNDLKP CIKKP EKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPR I Subject 959 IAVFGTLGR*TSPPFHPKVRSSLSDGMCSMFVPANLMTFNDLKPRCIKKPIEKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTI 1309
Range 4: 958 to 1299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.7 bits(460) | 0.0 | 94/114(82%) | 0/114(0%) | Plus/Plus |
Query 5 LLRGEGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPEGGVGLITKG*GEKFIDAVASHLPFR*VS*CTWALDR*KPSGLRARTYYTYHRSMKSAPLGGRAQMFISPGHQ 346 LL G GLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPP+GGVGL +G*GEKF D VASHLPFR*VS*CT ALDR*+ GLRARTYYT H SMKS PLGGRA+ ISP Q Subject 958 LLCGVGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CTLALDR*RSLGLRARTYYTCHHSMKSVPLGGRAETSISPMSQ 1299
Range 5: 959 to 1303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 94/115(82%) | 0/115(0%) | Plus/Plus |
Query 6 YCAGKGYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV**RKAEGRNL*TPLLLIFLFGRFLDAHGL*IVESRQVCGHEHTTHTIAQ*RAHLWVEERRCLSPQGTKH 350 YCAG GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV* +AEGRNL T LLLIFLF RFLDA L*IV+ VCGHEHTTH I Q*RA+LWVE RR LSPQ K+ Subject 959 YCAG*GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLFDRFLDAPWL*IVKGH*VCGHEHTTHAITQ*RAYLWVEGRRRLSPQCPKN 1303
Range 6: 958 to 1290 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 93/111(84%) | 0/111(0%) | Minus/Minus |
Query 5 WGDKHLRSSTQRCALH*AMVCVVCSCPQT*RLSTI*SPCASRNLPKRKMRSNGVYKFLPSAFRY*TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYXXXXXXXXPFPAQ* 337 WGD+ LR STQR ALH* M CVVCSCPQT* TI*S ASRNL KRKMRSN V KFLPSA *TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYSR*SPRS*P+PAQ* Subject 958 WGDRRLRPSTQRYALH*VMACVVCSCPQT**PLTI*SQGASRNLSKRKMRSNDVCKFLPSASHC*TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYSR*SPRS*PYPAQ* 1290
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 1697 to 1957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 29/87(33%) | 0/87(0%) | Plus/Plus |
Query 25 TIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMHMGFRSLKAVRFAGTNILHIPS 285 TI +F+ P +V LP + + R R V + GWCW+N RLR + R S ++ +M MG R ++ VR A H+ S Subject 1697 TITEFLFGVGPDDEVQLPDMAFYCPRLRRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYTAKEVMDMGLRKVRMVRTAKVGFYHVVS 1957
Nucleotide Sequence (315 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
240.3 | 1297.2 | 16% | 4.601e-63 | 43% | NC_004667 | |
132.6 | 240.6 | 14% | 1.195e-30 | 38% | NC_022072 | |
69.8 | 127.2 | 20% | 9.429e-12 | 32% | NC_016509 | |
61.6 | 61.6 | 31% | 2.866e-09 | 31% | NC_029783 | |
47.3 | 94.2 | 19% | 5.411e-05 | 28% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 15262 to 15564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.3 bits(518) | 0.0 | 98/101(97%) | 0/101(0%) | Minus/Plus |
Query 6 GEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFYSHHHYSTYREENSASVYCPS*ARRPEEVHSLL 308 GEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVF SHH+YSTYREENSASVYCPS*ARRPEEVHS+L Subject 15262 GEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVL 15564
Range 2: 15263 to 15568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 95/102(93%) | 0/102(0%) | Plus/Minus |
Query 2 DSVGSEPLRDAVLS*GSIRWLNFLLYK*SNGGVSKIPHEGSHSVGWRRIVFPS*YSFPYFRIT*VDFLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIP 307 ++V SEPLRDAVLS*GS RWLNFLLYK*SN GVSKIPHEGSHSVGWRR VFPS*YSFPYFRIT*VD LLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIP Subject 15263 EAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIP 15568
Range 3: 15263 to 15562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.1 bits(485) | 0.0 | 96/100(96%) | 0/100(0%) | Minus/Plus |
Query 8 GNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY 307 GNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPY Subject 15263 GNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPY 15562
Range 4: 15262 to 15564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(452) | 0.0 | 95/101(94%) | 0/101(0%) | Plus/Minus |
Query 6 Q*GVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP 308 Q GVNLFGTPCLARAV+AG*IFFSISRV+VV* KYLMKDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP Subject 15262 QYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP 15564
Range 5: 15264 to 15569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 96/102(94%) | 0/102(0%) | Minus/Plus |
Query 1 GI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKRKST*VIRK*GKLY*EGNTMRLQPTLCDPS*GIXXXXXXXXX*RRKFSQRILP*LSTASRRGSLPTES 306 GI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKR+ST*VIRK*GKLY*EGNT+RLQPTLCDPS*GILLTP LLYL*RRKFSQR+LP*LSTASRRGSL T S Subject 15264 GI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTAS 15569
Range 6: 15423 to 15563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 44/47(94%) | 0/47(0%) | Plus/Minus |
Query 7 SRE*TSSGRRA*LGQYTLAEFSSL*VE*WWCE*NTS*RIAQCWLETH 147 S E*TSSGRRA*LGQYTLAEFSSL*VE* WCE NTS*RIAQCWLETH Subject 15423 STE*TSSGRRA*LGQYTLAEFSSL*VE**WCEQNTS*RIAQCWLETH 15563
Range 7: 15261 to 15299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 13/13(100%) | 0/13(0%) | Plus/Minus |
Query 271 VRKVVSWPLSYSP 309 VRKVVSWPLSYSP Subject 15261 VRKVVSWPLSYSP 15299
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 16159 to 16461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 54/101(53%) | 0/101(0%) | Minus/Plus |
Query 8 EGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY 310 +GN +V +IQLF+LYSTVK+ ++ Y++ L K+V LS+ VR AIL G D S TN VR++MRY+ +T ++LL+ K+QPAYTA AKHGVPKRF P+ Subject 16159 KGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPF 16461
Range 2: 16161 to 16463 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 45/101(45%) | 0/101(0%) | Plus/Minus |
Query 6 Q*GVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP 308 Q G NLFGTPCLA AV AG R+ V YL+ RT+LV + S P +IA LT+ LK T F + + LY L++ TV S KS I T FP Subject 16161 QNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFP 16463
Grapevine leafroll-associated virus 1, complete genome
Range 1: 15096 to 15389 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 31/98(32%) | 0/98(0%) | Minus/Plus |
Query 8 MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY 301 + + MIQ + +ST N+ + +V+ L +K + ++E+R I + N VR +MR+F+ TTI+L+ + P Y +A+HGV +F PY Subject 15096 LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPY 15389
Range 2: 13685 to 13870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 22/62(35%) | 0/62(0%) | Minus/Plus |
Query 8 LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY 193 L+Y +V+ A++ G ++ N +R + R F+ T + L++ K++P +HGVPKRF PY Subject 13685 LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPY 13870
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 15317 to 15607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 30/97(31%) | 0/97(0%) | Minus/Plus |
Query 8 IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY 298 ++A+IQ V YSTV++ + D V + + Y++ + I + +N +R +MR+++ TTI+L+ I+P Y A HGV K + PY Subject 15317 LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPY 15607
Range 1: 13653 to 13943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 27/97(28%) | 0/97(0%) | Minus/Plus |
Query 8 IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY 298 +V + Q+ V+ T N D + K+ +Y VRE+I N +R FMR + + + L I+P ++K GVP F PY Subject 13653 MVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPY 13943
Range 2: 8772 to 8954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 21/61(34%) | 0/61(0%) | Minus/Plus |
Query 8 SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY 190 +Y+EV I + N VR+F+R+ + I L+I I+P +AK+G+P++F PY Subject 8772 NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPY 8954
Nucleotide Sequence (501 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
346.6 | 1871.8 | 48% | 9.424e-95 | 85% | NC_004667 | |
281.9 | 620.1 | 49% | 2.648e-75 | 40% | NC_022072 | |
225.6 | 347.3 | 29% | 2.47e-58 | 52% | NC_016509 | |
133.0 | 358.2 | 38% | 1.593e-52 | 42% | NC_029783 | |
107.4 | 266.4 | 31% | 4.47e-40 | 44% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 7642 to 8127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.6 bits(750) | 0.0 | 161/162(99%) | 0/162(0%) | Minus/Plus |
Query 16 NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK 501 NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDP K Subject 7642 NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLK 8127
Range 2: 7643 to 8119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.7 bits(735) | 0.0 | 153/159(96%) | 0/159(0%) | Plus/Minus |
Query 24 DREQKRDYPRLELKT*NKNKEQLG*ISLRQNQNYRSEPTYQYLTAAD*I*GYHHH*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSLFSRRYHTHHKRK*TKLLYQHQXXXXXXXXXXXXEHSEICRTY*YPVHRCSIAGCPPN 500 DREQKRDYPRLELKT*NKN EQLG* SLRQNQNYRSEPTYQY TAAD*I*GYHH *LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSS FSRRYHTHHKRK*TKLLYQHQVSRVSTPPP S*EHSEICRTY*YPVHRCSIAGCPPN Subject 7643 DREQKRDYPRLELKT*NKNMEQLG*KSLRQNQNYRSEPTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPPAS*EHSEICRTY*YPVHRCSIAGCPPN 8119
Range 3: 7644 to 8051 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 130/136(96%) | 0/136(0%) | Minus/Plus |
Query 92 FGGHPAILHL*TGYQ*VRQISECSHETGGGVDTLDTWC**RSFVYFLLW*V**RRENNDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*W***PHI*SAAVRY*YVGSER*FWF*RKDI*P 499 FGGHPAILHL*TGYQ*VRQISECSHE GGGVDTLDTWC**RSFVYFLLW*V**RREN+DEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS* ***P+I*SAAV Y*YVGSER*FWF*RKD *P Subject 7644 FGGHPAILHL*TGYQ*VRQISECSHEAGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YVGSER*FWF*RKDF*P 8051
Range 4: 8033 to 8131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 28/33(85%) | 0/33(0%) | Minus/Plus |
Query 12 T*RYLTKLLLIFVLSF*FKSRIVSFLFPIPPNT 110 T*R+LTKLL IFVLSF*FKSRIVSFLFPI N+ Subject 8033 T*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNS 8131
Range 5: 7642 to 8127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.5 bits(643) | 0.0 | 153/162(94%) | 0/162(0%) | Plus/Minus |
Query 16 FGGIGNKKETILDLN*KLRTKIRSSLVKYLYVKTKIIAQXXXXXXXXLPTKYEAXXXXXXXXXXXXSPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHCSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQI 501 F IGNKKETILDLN*KLRTKI SSLVK LYVKTKIIAQNRRINI RLPTKY+AIIT NYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRH SHDAIILTTKESRQNFSINTKCQEYQLLHL HESTLRFVVLTDIQFIGVVLPDVPQI Subject 7642 FKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLLHESTLRFVVLTDIQFIGVVLPDVPQI 8127
Range 6: 7710 to 7931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 74/74(100%) | 0/74(0%) | Plus/Minus |
Query 212 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 433 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA Subject 7710 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 7931
Range 7: 7968 to 8126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 49/53(92%) | 0/53(0%) | Plus/Minus |
Query 17 LEGSGTKKRLSST*TKNLEQK*GAAWLNIFTSKPKLSLRTDVSISNGCRLNMR 175 L GSGTKKRLSST*TKNLEQK GAAWL IFTSKPKLSLRTDVSISNGCRLN+R Subject 7968 LSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISNGCRLNIR 8126
Range 8: 7644 to 7670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 9/9(100%) | 0/9(0%) | Plus/Minus |
Query 473 V*YCRMSPK 499 V*YCRMSPK Subject 7644 V*YCRMSPK 7670
Range 9: 7643 to 7930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.7 bits(484) | 0.0 | 94/96(98%) | 0/96(0%) | Minus/Plus |
Query 213 IWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSMIAS*EQ*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD 500 IWGTSGNTTPMNWISVSTTNLRVLS*+RWRS*YS*HLVLIEKFCLLSFVVSMIAS*E+*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD Subject 7643 IWGTSGNTTPMNWISVSTTNLRVLS*SRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD 7930
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 8706 to 9191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
281.9 bits(609) | 0.0 | 130/162(80%) | 0/162(0%) | Minus/Plus |
Query 16 NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK 501 +LGDIR Y YELDISKYDKSQ++LMKQVEELILLTLGVD+EVL TFFCGEYDS+V +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG + Y+VVSGDDSLIFSR LDIDTS LSDNFGFDVK+F QA PYFCSKFLVQ + LFFVPDP K Subject 8706 DLGDIRAYTCYELDISKYDKSQASLMKQVEELILLTLGVDKEVLDTFFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLK 9191
Range 2: 8777 to 8992 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 50/72(69%) | 0/72(0%) | Plus/Minus |
Query 215 PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 430 PL+ TDNKV T +FPN V APPLRL* PTD TNS T LSYSPQK V KTSLSTP VK I+SSTCF+R Subject 8777 PLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSPQKNVSKTSLSTPRVKRISSSTCFIR 8992
Range 3: 9032 to 9184 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 30/51(59%) | 0/51(0%) | Plus/Minus |
Query 23 GSGTKKRLSST*TKNLEQK*GAAWLNIFTSKPKLSLRTDVSISNGCRLNMR 175 GSGTK S T+N EQK*G A L FTS PKLSL +VSISN R +R Subject 9032 GSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNSVREKIR 9184
Range 4: 8716 to 8778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 9/21(43%) | 0/21(0%) | Plus/Minus |
Query 429 EHSEICRTY*YPVHRCSIAGC 491 E E CRTY P+H C Subject 8716 ETLETCRTYLCPIHNTCTLLC 8778
Range 5: 8736 to 8984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 35/83(42%) | 0/83(0%) | Plus/Minus |
Query 223 YYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHCSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFI 471 ++ QQG + + P V TT +PL +RQ LR H +I TTKE + IN + E +L HL H+ LR VVLT +QFI Subject 8736 HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLRG*RHQTVIFTTKERV*DLLINPQS*ENKLFHLLHQRRLRLVVLTYVQFI 8984
Grapevine leafroll-associated virus 1, complete genome
Range 1: 8169 to 8651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 102/161(63%) | 0/161(0%) | Minus/Plus |
Query 16 LGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK 498 LGD+ YY YELDISKYDKSQ A MK VE IL+ LGV V+ FFCGEYDSVV ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS+ L ID +L ++FGFD+K+ Q APYFCSK+LV+ D +F+PDP K Subject 8169 LGDVSGYYVYELDISKYDKSQGACMKDVERRILIGLGVSESVVDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFK 8651
Range 2: 8234 to 8452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 38/73(52%) | 0/73(0%) | Plus/Minus |
Query 215 PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 433 P NKV +TK+FPNHV APP PTD T+SF ++TT SYSPQKK T TP I ST FM A Subject 8234 PFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTPRPIKIRLSTSFMHA 8452
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 8458 to 8700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 56/81(69%) | 0/81(0%) | Minus/Plus |
Query 256 LGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN 498 LGDI QYY YELDISKYDKSQ+ LMK E +L LGV+ + L FF GEYDS V KEL LS+GSQRRSGGANTWLGN Subject 8458 LGDISQYYCYELDISKYDKSQAGLMKDTERALLSMLGVESDTLDMFFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGN 8700
Range 2: 8749 to 8940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 35/64(55%) | 0/64(0%) | Minus/Plus |
Query 16 YSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK 207 + ++ SGDDSLIFS++ LD+DT+ LS +GFDVK+ + + PYFCSK+ V+ D L FVPDP K Subject 8749 FDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFK 8940
Range 3: 8526 to 8738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 32/71(45%) | 0/71(0%) | Plus/Minus |
Query 218 LSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 430 L + DN +KT +FPNHV APPL * P D NS + + T SYSP+K + + SLSTP++ + S F++ Subject 8526 LRSIDNSDNKTIVFPNHVFAPPLLR*LPIDKDNSLLCIETLESYSPEKNISRVSLSTPNILNNALSVSFIK 8738
Range 1: 6256 to 6489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 42/78(54%) | 0/78(0%) | Minus/Plus |
Query 256 IRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN 489 ++ + E+DISK+DKSQ L+KQ+EE++L LGVD EVL+ ++ EY+SV T K L +SV +QRR+GG+NTWLGN Subject 6256 VQNLFCSEVDISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGN 6489
Range 2: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 30/60(50%) | 0/60(0%) | Minus/Plus |
Query 25 SYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPD 204 +++ SGDDSL+ SR P+ D LS GFDVK A PYFCSK+++ ED +F VPD Subject 6541 TFVCFSGDDSLVLSRDPIYFDFFKLSLELGFDVKFTPVATPYFCSKYIINTEDRIFIVPD 6720
Range 3: 6315 to 6497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 27/61(44%) | 0/61(0%) | Plus/Minus |
Query 248 TKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 430 T + PNHV PP+ L T+ VL TLSYS KTS STP +S SS CF++ Subject 6315 TIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKRRSTISSICFIK 6497
Nucleotide Sequence (355 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 16171 to 16491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.8 bits(528) | 0.0 | 107/107(100%) | 0/107(0%) | Plus/Plus |
Query 35 Y*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGF 355 Y*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGF Subject 16171 Y*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGF 16491
Range 2: 16185 to 16490 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 102/102(100%) | 0/102(0%) | Minus/Minus |
Query 49 KPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPL 354 KPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPL Subject 16185 KPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPL 16490
Range 3: 16167 to 16349 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.9 bits(310) | 0.0 | 60/61(98%) | 0/61(0%) | Plus/Plus |
Query 31 GILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*SCQSRLERTITWF*Y 213 GILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS* CQSRLERTITWF*Y Subject 16167 GILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y 16349
Range 4: 16389 to 16490 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 34/34(100%) | 0/34(0%) | Plus/Plus |
Query 253 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL 354 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL Subject 16389 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL 16490
Range 5: 16162 to 16326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 53/55(96%) | 0/55(0%) | Minus/Minus |
Query 26 VLSDFDNFKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISHS 190 VLSDFDN KIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH+ Subject 16162 VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISHT 16326
Range 6: 16378 to 16491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 38/38(100%) | 0/38(0%) | Minus/Minus |
Query 242 KAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL 355 KAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL Subject 16378 KAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL 16491
Range 7: 16322 to 16489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 56/56(100%) | 0/56(0%) | Plus/Plus |
Query 186 RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKA 353 RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKA Subject 16322 RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKA 16489
Range 8: 16166 to 16273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 36/36(100%) | 0/36(0%) | Plus/Plus |
Query 30 WDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M 137 WDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M Subject 16166 WDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M 16273
Range 9: 16235 to 16489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 84/85(99%) | 0/85(0%) | Minus/Minus |
Query 99 SLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QL*DKIAERKQLHLNPG*SDDKT*V 353 SLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*Q *DKIAERKQLHLNPG*SDDKT*V Subject 16235 SLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V 16489
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Nucleotide Sequence (445 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
345.2 | 1923.9 | 30% | 2.089e-94 | 96% | NC_004667 | |
100.5 | 100.5 | 31% | 9.388e-21 | 37% | NC_022072 | |
47.3 | 47.3 | 14% | 9.396e-05 | 38% | NC_016417 | |
46.4 | 46.4 | 14% | 0.0001773 | 37% | NC_016081 | |
45.1 | 45.1 | 14% | 0.0004599 | 37% | NC_016416 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 12706 to 13140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
345.2 bits(747) | 0.0 | 145/145(100%) | 0/145(0%) | Plus/Plus |
Query 9 EKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE 443 EKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE Subject 12706 EKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE 13140
Range 2: 12702 to 13142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.9 bits(729) | 0.0 | 144/147(98%) | 0/147(0%) | Plus/Plus |
Query 5 RGEVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*IL*RSHMSG*ATLRHSQEQLEDAELCRRYVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERK 445 R EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*+L*RSHMSG*ATLRHSQEQLEDAELCRR VSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERK Subject 12702 RREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERK 13142
Range 3: 12707 to 13141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
335.6 bits(726) | 0.0 | 143/145(99%) | 0/145(0%) | Minus/Minus |
Query 10 FRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTYRLHNSASSNCSCECRNVA*PDM*DRYSIYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTS 444 FRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLT RLHNSASSNCSCECRNVA*PDM*DRYS YIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTS Subject 12707 FRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTS 13141
Range 4: 12706 to 13140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.9 bits(718) | 0.0 | 143/145(99%) | 0/145(0%) | Minus/Minus |
Query 9 FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RTVYITQRLPIVPANAVMSPSQTCEIAIVST*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLL 443 FVRLDIVYNASVICGVDRISHLRSYTISRVIR*R VYITQRLPIVPANAVMSPSQTCEIAIV T*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLL Subject 12706 FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLL 13140
Range 5: 12705 to 13142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.6 bits(678) | 0.0 | 146/146(100%) | 0/146(0%) | Minus/Minus |
Query 8 FSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFS 445 FSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFS Subject 12705 FSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFS 13142
Range 6: 12893 to 13054 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 52/54(96%) | 0/54(0%) | Plus/Plus |
Query 196 KIVPLEYQKSAG*TLNVYYVDTIAISHVWLGDITAFAGTIGRR*VM*TVR*RMT 357 KIVPLEYQKSAG*TLNVYYV TIAISHVWLGDITAFAGTIGRR*VM*T R*RMT Subject 12893 KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TGR*RMT 13054
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 13679 to 14095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 51/139(37%) | 0/139(0%) | Plus/Plus |
Query 27 LMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE 443 +++EN + A II++YYSIYGTNA RI RRP L V ++ R + L VE + IN R L R Y+ LT R + I RNNW+TL +DG +A+DT + + + D+ + +IK+NE Subject 13679 VLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNE 14095
Grapevine leafroll-associated virus 6, complete genome
Range 1: 11590 to 11778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 24/63(38%) | 0/63(0%) | Plus/Plus |
Query 12 KLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVED 200 KLV L+ +N L +T A++++L Y Y TNA R P L+ IK V+KV GV++ Subject 11590 KLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE 11778
Grapevine leafroll-associated virus 5, complete genome
Range 1: 11153 to 11341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 23/63(37%) | 0/63(0%) | Plus/Plus |
Query 12 KLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVED 200 KLV L+ N + +T A++I+L Y Y TNA R P L+ IK V++V GV++ Subject 11153 KLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE 11341
Grapevine leafroll-associated virus 4, complete genome
Range 1: 11600 to 11788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 23/63(37%) | 0/63(0%) | Plus/Plus |
Query 12 KLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVED 200 KLV L+ +N L ++ A++++L Y Y TNA R P L+ IKG V V GV++ Subject 11600 KLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN 11788
Nucleotide Sequence (358 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
287.4 | 1587.8 | 14% | 3.606e-77 | 40% | NC_004667 | |
179.3 | 397.6 | 13% | 1.287e-44 | 34% | NC_022072 | |
71.2 | 210.5 | 15% | 5.525e-15 | 45% | NC_016509 | |
70.7 | 116.7 | 19% | 6.31e-12 | 47% | NC_029783 | |
66.6 | 66.6 | 16% | 1.1e-10 | 42% | NC_011702 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 13722 to 14072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.4 bits(621) | 0.0 | 116/117(99%) | 0/117(0%) | Plus/Minus |
Query 2 AVYRVRKEFRWYPMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLH 352 AVYRVRKEFRWY MLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLH Subject 13722 AVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLH 14072
Range 2: 13721 to 14071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.0 bits(596) | 0.0 | 115/117(98%) | 0/117(0%) | Minus/Plus |
Query 3 DGAV*EGYGRR*RSN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWGTTEILSVHDRL 353 DGAV*EGYGRR*RSN*D+ILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAW TTEILSVHDRL Subject 13721 DGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRL 14071
Range 3: 13719 to 14072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 116/118(98%) | 0/118(0%) | Minus/Plus |
Query 2 VMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC 355 +MELCKKVMGADDAATKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC Subject 13719 LMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC 14072
Range 4: 13865 to 14071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.6 bits(366) | 0.0 | 69/69(100%) | 0/69(0%) | Plus/Minus |
Query 3 QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 209 QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP Subject 13865 QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 14071
Range 5: 13721 to 13825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 34/35(97%) | 0/35(0%) | Plus/Minus |
Query 249 EDDVKNVQAICITYKKNFVLVAASSAPITFLHSSI 353 EDDVKNVQAICITYKKN VLVAASSAPITFLHSSI Subject 13721 EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSI 13825
Range 6: 13798 to 14073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 91/92(99%) | 0/92(0%) | Plus/Minus |
Query 1 RSLSCTERISVVPHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ 276 RSLSCTERISVV HAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ Subject 13798 RSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ 14073
Range 7: 13720 to 13746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 9/9(100%) | 0/9(0%) | Plus/Minus |
Query 328 P*PSYTAPS 354 P*PSYTAPS Subject 13720 P*PSYTAPS 13746
Range 8: 13846 to 14073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 75/76(99%) | 0/76(0%) | Minus/Plus |
Query 1 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMGYHRNSFRTR*TA 228 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSM YHRNSFRTR*TA Subject 13846 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TA 14073
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 14646 to 14990 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 78/115(68%) | 0/115(0%) | Minus/Plus |
Query 2 LCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC 346 LC+K++GA+D T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY V++ IK A STGYENPVRQYLA+FTPT +TA LNGKL NEKVMAQHGVPPKFF YT+DC Subject 14646 LCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDC 14990
Range 2: 14783 to 14989 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 38/69(55%) | 0/69(0%) | Plus/Minus |
Query 3 QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 209 QS V KN GGTPC AITFS SLP +AV VGV +ARY TGFS PV+ AC + T + IF P Subject 14783 QSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP 14989
Range 3: 14636 to 14737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 16/34(47%) | 0/34(0%) | Plus/Minus |
Query 255 DVKNVQAICITYKKNFVLVAASSAPITFLHSSIT 356 DV NV AIC + FV V S AP F HS+ + Subject 14636 DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFS 14737
Range 4: 14646 to 14990 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 39/115(34%) | 0/115(0%) | Plus/Minus |
Query 2 AVYRVRKEFRWYPMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQ 346 A+ V KE RWY +L H+LLV * T++ R + + R IL V + R +S+F + + + L +I VV+LF R R ER +L + E S ++ + LLTQ Subject 14646 AIQCVGKELRWYSVLSHHLLVRS*LTVKHSRHDRRGKPRQILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ 14990
Grapevine leafroll-associated virus 1, complete genome
Range 1: 13700 to 13879 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 29/60(48%) | 0/60(0%) | Minus/Plus |
Query 5 VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID 184 V + + A + +ENP+RQY F+ T + LNGKL NEKV QHGVP +F PYT D Subject 13700 VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFD 13879
Range 2: 13532 to 13603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 11/24(46%) | 0/24(0%) | Minus/Plus |
Query 275 LCKKVMGADDAATKTKFFLYVMQI 346 LC +VMG D + T FFL ++Q+ Subject 13532 LCAEVMGNTDQKSLTDFFLAMLQL 13603
Range 3: 15231 to 15398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Plus |
Query 5 IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID 172 I+ + + YENPVRQY+ +F+ T I+ +G +V N VMA+HGV +F PY D Subject 15231 IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD 15398
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 13986 to 14165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 28/60(47%) | 0/60(0%) | Minus/Plus |
Query 5 VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID 184 +Y I+ A + YENPVRQY F+P+ I+A+ GK+ N+KV+AQHGV +F Y +D Subject 13986 LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLD 14165
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 12579 to 12749 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 24/57(42%) | 0/57(0%) | Minus/Plus |
Query 2 IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC 172 + + A+ GYEN +RQ+ FT + +GKL +N K+ A HGVPP ++PY+ DC Subject 12579 LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDC 12749
Nucleotide Sequence (496 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 9695 to 10189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
350.7 bits(759) | 0.0 | 154/165(93%) | 0/165(0%) | Minus/Plus |
Query 1 VLSYMTLRQNYELSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*SSCRAKVES*FYIEVGVFVYGRF*TGNTVASSRFCLRDNSVAGSYVCRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHLQYNLLFPIWGQRLYSCGR*CLL*N 495 VLSYMTLR NYE SFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE* SC AKV S*FYIEVGVFVYG F*TGNTVASSRFCLRDNS AGSYV RPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNH Q+NLLFPIWGQRLYSCGR*CL *N Subject 9695 VLSYMTLRPNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEVGVFVYG*F*TGNTVASSRFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSCGR*CLR*N 10189
Range 2: 9695 to 9949 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 82/85(96%) | 0/85(0%) | Plus/Minus |
Query 241 ACLKSSINKYAYFNIKSRFYLRSARRSFAWRLPRFLF*GELVLSQSRAKAYLCRH*TSSSADERTQRRLHEGKFIILT*RHIRQH 495 ACLKSSINKYAYFNIKSR+YLRSARRSFAWRLPRFLF*GELVLSQSRAK YLCRH*TSSSADERTQRRLHEGKFII T*RHIRQH Subject 9695 ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIIWT*RHIRQH 9949
Range 3: 9949 to 10188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.0 bits(380) | 0.0 | 74/80(92%) | 0/80(0%) | Plus/Minus |
Query 2 FQSKHYRPQEYNR*PQMGKSKLY*RWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRQT*EPATELSRRQNRLLATVL 241 FQ KHYRPQEYNR*PQMGKS+L *+WFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGR+T*EPA ELSRRQNRLLATVL Subject 9949 FQRKHYRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVL 10188
Range 4: 9697 to 10188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.0 bits(751) | 0.0 | 154/164(94%) | 0/164(0%) | Minus/Plus |
Query 2 VVVYDATSKL*TFLRVGVVECVHRR*TRFSGDINRLLREIGIERVRLKREIGEGATRMIFVQSEGRIVILY*SRRICLWTILNRQYCC**SILSS**FCCWFLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPPSVQFAFPHLGSAVVLLWPVVFTLK 493 VVVYDATSKL* FLRVGVVECVHRR*TRFSGDINR LREIGIERVRLKREIGEGATRM FV SEG IVILY*SRRICLW ILNRQYCC**SILSS**FCCWFLR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEP S Q AFPHLGSAVVLLWPVVFTLK Subject 9697 VVVYDATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGSAVVLLWPVVFTLK 10188
Range 5: 9774 to 10187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.3 bits(684) | 0.0 | 129/138(93%) | 0/138(0%) | Plus/Minus |
Query 3 FKVNTTGHRSTTADPRWGKANCTEGGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRKNQQQNYHEDKIDY*QQYCLFKIVHKQIRLLQYKITILPSLCTKIIRVAPSPISLLRRTRSIPISRKSLFMSPLNLV 416 F VNTTGHRSTTADPRWGKA+C E GSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+RKNQQQNYHEDKIDY*QQYCLFKI+HKQIRLLQYKITILPSL TK+IRVAPSPISLLRRTRSIPISRK+LFMSPLNLV Subject 9774 FNVNTTGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV 10187
Range 6: 9696 to 9734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/13(85%) | 0/13(0%) | Plus/Minus |
Query 456 KVHNFDVASYTTT 494 K+HN DVASYTTT Subject 9696 KIHNLDVASYTTT 9734
Range 7: 9696 to 9950 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 82/85(96%) | 0/85(0%) | Minus/Plus |
Query 240 CCRI*RYVKIMNFPSCRRR*VRSSALDEV*WRHK*AFARDWDRTSSP*KRNRGRRHANDLRAERR*NRDFILK*AYLFMDDFKQA 494 CCRI*RYV+IMNFPSCRRR*VRSSALDEV*WRHK* FARDWDRTSSP*KRNRGRRHANDLRAERR* RDFILK*AYLFMDDFKQA Subject 9696 CCRI*RYVQIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA 9950
Range 8: 10017 to 10187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 56/57(98%) | 0/57(0%) | Minus/Plus |
Query 3 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYFE 173 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVY E Subject 10017 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVE 10187
Range 9: 9694 to 9900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 64/69(93%) | 0/69(0%) | Plus/Minus |
Query 290 HDSTFALHEDHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKESS*F*RSVIYDNT 496 HD+TFA HE HSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKE+S*F RSVIYDNT Subject 9694 HDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*FGRSVIYDNT 9900
Range 10: 10001 to 10189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 62/63(98%) | 0/63(0%) | Plus/Minus |
Query 1 VSK*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR 189 VS *TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR Subject 10001 VST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR 10189
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Plum bark necrosis and stem pitting-associated virus, complete genome
Pineapple mealybug wilt-associated virus 1, complete genome
Nucleotide Sequence (499 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
375.0 | 1843.1 | 28% | 2.644e-103 | 84% | NC_004667 | |
238.0 | 346.2 | 35% | 4.621e-62 | 46% | NC_022072 | |
159.6 | 159.6 | 33% | 1.784e-38 | 42% | NC_016509 | |
146.8 | 209.4 | 50% | 1.299e-34 | 39% | NC_029783 | |
104.2 | 104.2 | 32% | 8.741e-22 | 31% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1938 to 2426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
375.0 bits(812) | 0.0 | 156/163(96%) | 0/163(0%) | Minus/Plus |
Query 10 VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYNAQT 498 VYDISPQQVAEAMDKKGAL FD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVT RSLVP+FVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSY T Subject 1938 VYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNT 2426
Range 2: 1937 to 2434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.2 bits(734) | 0.0 | 151/166(91%) | 0/166(0%) | Plus/Minus |
Query 2 VGCVWAL*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNANAPFLSIASATCCGDISYT 499 V V + *E*ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL VTSVPGDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S +APFLSIASATCCGDISYT Subject 1937 VPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYT 2434
Range 3: 1938 to 2414 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.1 bits(701) | 0.0 | 136/159(86%) | 0/159(0%) | Plus/Minus |
Query 22 VGIDPVDKIRIEDYRLEGHTRTSYNRYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLILKLKHVPG*SAYVRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IECQRTLLIHSLCHLLRGYIVH 498 VGIDPVDK+RIEDY L+GHTRTSYNRY+HQRFAHERRDQ P R+L SR*LL PTHS+MMV TVSLIL LKHVPG SAY+RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVH Subject 1938 VGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVH 2414
Range 4: 1939 to 2364 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
280.6 bits(606) | 0.0 | 123/142(87%) | 0/142(0%) | Minus/Plus |
Query 72 CTIYPRSRWQRLWIRRVRWHSI*LLCSPWSCCMVTAKFTWRNSIR**RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLTYALHPGTCLSLSMRDTVAATIILLCVGHRSHLEPRSRVGHWSRRSWANRWCXXXXXXXXVCP 497 CTIYPRSR QRLWIRRVRW S *LLCSPWSCC VT KFTW+NSIR *RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL YAL PGTCLS SMRDTV TII LCVG RSHLE R R+G WSRRSWANRWC YLL*LVLVCP Subject 1939 CTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCP 2364
Range 5: 1937 to 2416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.7 bits(604) | 0.0 | 134/160(84%) | 0/160(0%) | Minus/Plus |
Query 20 CVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLRTHFIRERV*A*V*GIPLRLPSSYYV*GTEVTWNRGHA*VIGPDVRGQIVGVYTCCSWF*CVLQDDSPRFGFCRQDLFLQ 499 CVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL THF+RERV*A V*GIPL LPSS+YV*G+EVTWN G+ *V+GP VRGQI GV+TCCSWF*CVL D+SPRFG CRQDLFL+ Subject 1937 CVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLR 2416
Range 6: 2200 to 2412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 60/71(85%) | 0/71(0%) | Plus/Minus |
Query 24 RNRSCRQNPNRGLSS*RTH*NQLQQV*TPTICPRTSGPMTYA*PRFQVTSVPYT**DDGSRNGIPHTQA*T 236 RNRSCRQ+PNRGL S*RTH*NQLQQV*TP ICPRT+GP TY *P+FQVTS PYT**DDG+ NGIPHT A*T Subject 2200 RNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T 2412
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2657 to 3145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.0 bits(513) | 0.0 | 97/163(60%) | 0/163(0%) | Minus/Plus |
Query 10 VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYNAQT 498 VYD+ ++AEA+D KG + FDL M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK EVTRR +V +F K++V IPV+ G+ +SFK++VLD+DFVDR+YSY T Subject 2657 VYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNT 3145
Range 2: 2683 to 3117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 67/145(46%) | 0/145(0%) | Plus/Minus |
Query 38 STKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNANAPFLSIASA 472 STKS S T LKD P+ TGI T N T VTS+ F V+ W*P PSYS+L T PD V V+ T E C Y SP PT SP+ T VS+SSK TSPLP +SSTG+++ KS PF S ASA Subject 2683 STKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASA 3117
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2516 to 3004 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 68/163(42%) | 0/163(0%) | Minus/Plus |
Query 10 VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYNAQT 498 VYD+ ++A+A++KK F+L LMFP+EL +G + + EL V R+GD + Y VG G+ Y HS + FF + V+ SG+ F +EY GYR GYH ++C + + R + TF G SLV IP +A +SF+ + LDSDFVDR+YSY T Subject 2516 VYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNT 3004
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 3054 to 3530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 62/159(39%) | 0/159(0%) | Minus/Plus |
Query 22 VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSY 498 VYD+S +VA ++ KG FD+ M PVEL+ +G ++EL+T+V R+GD L Y+VG G+ Y+HSF V T V S + EY GYRCGYHH+ M R + T GK++V P + FK I +D++FV R+Y+Y Subject 3054 VYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNY 3530
Range 2: 3176 to 3352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 25/59(42%) | 0/59(0%) | Plus/Minus |
Query 200 *PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSS 376 *P YP YS + E T +V+ T KEC Y SP PTL* SP T V +S Subject 3176 *PHLYPIYSVVYAPTSEKDTAGQVRREKTF*KECWYESPVPPTL*VSRSPLRVTTVFNS 3352
Range 1: 1149 to 1625 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 50/159(31%) | 0/159(0%) | Minus/Plus |
Query 22 VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSY 498 VYDIS + + MDK + ++AL+ P EL+ +GEV ++ L+T+V+ + + Y +G G+ Y H + + T + V ++ G + + YEG R GY + + R+ S T T R + G +PV K + LD DFV+R+ SY Subject 1149 VYDISLLSLVDGMDKHKTVFTNVALILPAELIEESGEVDIQSLNTVVRWDHSTVTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSY 1625
Nucleotide Sequence (488 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 12172 to 12624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.6 bits(750) | 0.0 | 147/151(97%) | 0/151(0%) | Plus/Minus |
Query 6 KGVE*LYRHIRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY*QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNF*RHDRTL*ILRYVHILPY 458 KGVE*LYRH RF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHN *RHDRT *ILRYVHILPY Subject 12172 KGVE*LYRHTRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPYQQIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPY 12624
Range 2: 12172 to 12624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 147/151(97%) | 0/151(0%) | Minus/Plus |
Query 6 VGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYAADSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPF 458 VGKYVDVTQNLESTIVPL+VMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYA DSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYD+RVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKP VPIESFDPF Subject 12172 VGKYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPCVPIESFDPF 12624
Range 3: 12171 to 12626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 148/152(97%) | 0/152(0%) | Minus/Plus |
Query 4 GREVCGRNAEFREYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRCRLYGFLS*DVTPDCS*AVVKRRARISASTETTSKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLS 459 GREVCGRNAEFR+YDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIR RLYGFLS*DVTPDCS*AVVKRRARISA TETTSKFFLR KSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLS Subject 12171 GREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLS 12626
Range 4: 12171 to 12623 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.0 bits(727) | 0.0 | 147/151(97%) | 0/151(0%) | Plus/Minus |
Query 7 KGSNDSIGTYGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESAAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITFNGTIVLSKFCVTSTYFPT 459 KGSNDSIGT+GFKSLIPPGVSLLKNNLMTSLSVAITSYTQATL S*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIES AYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISIT NGTIVLSKFCVTSTYFPT Subject 12171 KGSNDSIGTHGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYFPT 12623
Range 5: 12167 to 12625 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
323.6 bits(700) | 0.0 | 148/153(97%) | 0/153(0%) | Plus/Minus |
Query 5 ERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLCRRKNLLVVSVLADILARLLTTAHEQSGVTS*LRKP*SRQRMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYSLNSALRPHTSLPK 463 ERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLL RRKNLLVVSV ADILARLLTTAHEQSGVTS*LRKP*SR RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSY LNSALRPHTSLP+ Subject 12167 ERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPE 12625
Range 6: 12227 to 12625 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
312.6 bits(676) | 0.0 | 130/133(98%) | 0/133(0%) | Minus/Plus |
Query 5 KLWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC*YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRMCL*SHSTPF 403 +LWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NR+CL*SHSTPF Subject 12227 ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRVCL*SHSTPF 12625
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 13127 to 13573 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 35/149(23%) | 0/149(0%) | Minus/Plus |
Query 12 VGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYAADSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFD 458 +GK ++ + +VPL + ++KR P VV +++ Y ++ + L D+ R + Y + +A++ + + ++ + L+R +P N +YD RVAW V + L I F + + +P+VP+E D Subject 13127 LGKATGLSDLGPNLVVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGRVVSVSVTSARPFVPLEGTD 13573
Nucleotide Sequence (763 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 3383 to 4144 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
593.5 bits(1289) | 0.0 | 251/254(99%) | 0/254(0%) | Plus/Plus |
Query 2 GVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGCDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECV**DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*WCHKCARRGD*HQRGSYW*RRDPFTS 763 GVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVG DRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECV *DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL* CHKCARRGD*HQRGSYW*RRDPFTS Subject 3383 GVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*CCHKCARRGD*HQRGSYW*RRDPFTS 4144
Range 2: 3384 to 4142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
557.8 bits(1211) | 0.0 | 248/253(98%) | 0/253(0%) | Minus/Minus |
Query 3 R*MGLFFTSNFPVGANPHVAHICDTIIV*DTRSGSIAIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIIHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHSRRKPSSHD*RSTGYCARXXXXXXXXGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRR 761 R*MGLFFTSNFPVGANPHVAHICD II *DTRSGSI IVTGNRFMLSPRWTSTFVIVKVPVIPKRLI+HIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGH RRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRR Subject 3384 R*MGLFFTSNFPVGANPHVAHICDNIIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRR 4142
Range 3: 3573 to 4025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
338.3 bits(732) | 0.0 | 151/151(100%) | 0/151(0%) | Plus/Plus |
Query 192 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMXXXXXXXXXXARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPG 644 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPG Subject 3573 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPG 4025
Range 4: 3382 to 3567 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 62/62(100%) | 0/62(0%) | Plus/Plus |
Query 1 WRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF 186 WRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF Subject 3382 WRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF 3567
Range 5: 4071 to 4142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 24/24(100%) | 0/24(0%) | Plus/Plus |
Query 690 VTNVRDVGISTNGEVTGEEETHSP 761 VTNVRDVGISTNGEVTGEEETHSP Subject 4071 VTNVRDVGISTNGEVTGEEETHSP 4142
Range 6: 3526 to 4047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
400.6 bits(868) | 0.0 | 172/174(99%) | 0/174(0%) | Minus/Minus |
Query 145 KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHHTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSQPTKTLFARLKIHRILC 666 KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASH THSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RS PTKTLFARLKIHRILC Subject 3526 KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC 4047
Range 7: 3382 to 3483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Minus |
Query 1 TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTP 102 TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTP Subject 3382 TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTP 3483
Range 8: 4090 to 4143 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 18/18(100%) | 0/18(0%) | Minus/Minus |
Query 709 EVNGSLLHQ*LPRWC*SP 762 EVNGSLLHQ*LPRWC*SP Subject 4090 EVNGSLLHQ*LPRWC*SP 4143
Range 9: 3383 to 3940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.5 bits(872) | 0.0 | 186/186(100%) | 0/186(0%) | Minus/Minus |
Query 2 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVSXXXXXXXXXXXAIPRLYFHAIGAAPKDA 559 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDA Subject 3383 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDA 3940
Range 10: 3983 to 4144 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 52/54(96%) | 0/54(0%) | Minus/Minus |
Query 602 RGEWXXXXXXXXXXXLIPTSRTFVTPS*FETLEVDPSLSSPGTASC*VPDGPAP 763 RGEWVSSSPVTSPLVLIPTSRTFVT S* ETLEVDPSLSSPGTASC*VPDGPAP Subject 3983 RGEWVSSSPVTSPLVLIPTSRTFVTTS*LETLEVDPSLSSPGTASC*VPDGPAP 4144
Range 11: 3604 to 3918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 105/105(100%) | 0/105(0%) | Plus/Plus |
Query 223 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH 537 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH Subject 3604 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH 3918
Range 12: 3958 to 4143 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 59/62(95%) | 0/62(0%) | Plus/Plus |
Query 577 ITGTLTMTKVLVHLGLSMKRFPVTIAMDPLLVSQTMMVSQMCATWGLAPTGKLLVKKRPIHL 762 ITGTLTMTKVLVHLGLSMKRFPVTI MDPLLVSQ MM+SQMCATWGLAPTGKLLVKKRPIHL Subject 3958 ITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMMLSQMCATWGLAPTGKLLVKKRPIHL 4143
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 5225 to 5398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 24/58(41%) | 0/58(0%) | Plus/Plus |
Query 414 VPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD 587 +P +VW+G + +L+ + + +SL++R L D +PQ+ + +EGRNVYDE L+YY+D Subject 5225 MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD 5398
Nucleotide Sequence (626 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
479.9 | 2574.8 | 34% | 9.3e-135 | 93% | NC_004667 | |
316.8 | 585.0 | 28% | 1.184e-85 | 32% | NC_022072 | |
152.7 | 152.7 | 31% | 2.843e-36 | 38% | NC_005065 | |
209.1 | 291.9 | 20% | 3.075e-53 | 32% | NC_029783 | |
93.2 | 387.9 | 47% | 7.451e-55 | 45% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 6165 to 6758 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
479.9 bits(1041) | 0.0 | 193/198(97%) | 0/198(0%) | Plus/Minus |
Query 31 KSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVGVYFSYVISGSNWPFGQRSYYWFILTANDLFRVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI 624 +SGINQ*ACVSRQTNKYMRLFSE*GVIG LRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHV VYFSYVISGSNWPFGQRSYYWF+LTANDLFRVTLFRSPYGH*GQQVANI*RTPV FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI Subject 6165 QSGINQ*ACVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI 6758
Range 2: 6165 to 6761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
469.4 bits(1018) | 0.0 | 198/199(99%) | 0/199(0%) | Minus/Plus |
Query 28 YKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS 624 YKRVLVDEV+MMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS Subject 6165 YKRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS 6761
Range 3: 6163 to 6558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.5 bits(656) | 0.0 | 129/132(98%) | 0/132(0%) | Minus/Plus |
Query 231 CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNHTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRINQ**DRCPKGQLEPLMT*LK*TPTCTCA*PSW 626 CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLN TGVR*MFATCCPQ*P*GERKSVTLKRSLAVR NQ**DRCPKGQLEPLMT*LK*T TCTCA*PSW Subject 6163 CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQLEPLMT*LK*TLTCTCA*PSW 6558
Range 4: 6589 to 6756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 55/56(98%) | 0/56(0%) | Minus/Plus |
Query 33 EKEKKHQ**QCMKHREKHSVMWYCLGRRRPMTPYSLNNRIYLLVCRDTHAHWFMPL 200 EKEKKHQ**QCMKHREKHSVMWYCLGRR+PMTPYSLNNRIYLLVCRDTHAHWFMPL Subject 6589 EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTHAHWFMPL 6756
Range 5: 6164 to 6442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 92/93(99%) | 0/93(0%) | Plus/Minus |
Query 347 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLY 625 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIM TSSTKTLLY Subject 6164 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSSTKTLLY 6442
Range 6: 6494 to 6766 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.7 bits(460) | 0.0 | 89/91(98%) | 0/91(0%) | Plus/Minus |
Query 23 FGERAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 295 F RAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI Subject 6494 FELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 6766
Range 7: 6257 to 6766 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.9 bits(753) | 0.0 | 164/170(96%) | 0/170(0%) | Minus/Plus |
Query 23 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IIQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G*TSSKIAVQKANWNH**RS*NKRRRVLVHDPXXXXXXXXXXXGKRKRNTSDDSA*STGKNIQ*CGIV*DEEGR*LPIH*TTAYTCWFVETHTLTGLCRSFTK 532 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*I+QVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G TSSKIAVQKANWNH**RS*NKR RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEE R*LPIH*TTAYTCWFVETHTLTGLCRS K Subject 6257 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHTLTGLCRSELK 6766
Range 8: 6164 to 6205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 13/14(93%) | 0/14(0%) | Minus/Plus |
Query 584 V*KGFGG*GVHDAS 625 V*KGFGG*G HDAS Subject 6164 V*KGFGG*GAHDAS 6205
Range 9: 6163 to 6534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 120/124(97%) | 0/124(0%) | Plus/Minus |
Query 255 RRRLFQLRHQWFQLAFWTAILLLVYPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCMI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTXXXXXXXXXXXXDASCTPHPPKPFYT 626 R+RLFQLRHQWFQLAFWTAILLLV PYR*RPFQGNTFPFPLRSLRTTSSKHLTDTC I*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASC PHPPKPFYT Subject 6163 RQRLFQLRHQWFQLAFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASCAPHPPKPFYT 6534
Range 10: 6619 to 6765 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 46/49(94%) | 0/49(0%) | Plus/Minus |
Query 24 LVKERHKPVSVCVSTNQQVYAVV**IGSHRPSSS*TIPHH*MFFPVLHA 170 L ERHKPVSVCVSTNQQVYAVV**IGSHR SSS*TIPHH*MFFPVLHA Subject 6619 LSSERHKPVSVCVSTNQQVYAVV**IGSHRLSSS*TIPHH*MFFPVLHA 6765
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 7229 to 7825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.8 bits(685) | 0.0 | 130/199(65%) | 0/199(0%) | Minus/Plus |
Query 28 YKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS 624 Y R+LVDEVYMMH+GLLQ G FA+GA EG+F+GD++QIPFINREK+FR + P+K + YT ++YRCPLDVC++LS++ EKCY VVSG PVVRS KRPIG+ DVA+I ADVYLC TQ EK +MKR L G+ PVMTVHEAQGKTF VVLFRTK+ADDS+F QPH LV LSRHT SLVYAALS Subject 7229 YDRILVDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHTSSLVYAALS 7825
Range 2: 7558 to 7830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 53/91(58%) | 0/91(0%) | Plus/Minus |
Query 23 FGERAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 295 F RAA*T E VCL++ T G +N SSA VLN TT VFPCAS TVITG + P FN FIS FS V HKYTSA I ATS+ +PI Subject 7558 FELRAA*TREEVCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI 7830
Range 3: 7228 to 7497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 45/90(50%) | 0/90(0%) | Plus/Minus |
Query 356 *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLY 625 *HFS ++ DN TSNG Y VY F G + N FS FM GI* SP K PS AP AK P+CSKP CIM TSST+ Y Subject 7228 *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKPSCIM*TSSTRIRSY 7497
Range 4: 7511 to 7819 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 33/103(32%) | 0/103(0%) | Plus/Minus |
Query 34 SGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVGVYFSYVISGSNWPFGQRSYYWFILTAN 342 S IN+ + +++ +RL E V+ L KQ + E FSL M CHH S ++ PLH+ LL+L QVH+ + + S+ P + S+Y + + N Subject 7511 SSINERRSMP*KSH*SVRLRVEHTVVSALSSKQNNFLESFSLRLMDCHHRFNSSEAI*LPLHLSLLRLCLTQVHISLDLRNISHTSDRPLLK*SHYRRLQSGN 7819
Range 5: 7229 to 7417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 21/63(33%) | 0/63(0%) | Plus/Minus |
Query 436 VYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI 624 V + LL + + + ++LL VYE L+ +S + + + + L * LMHHV LI++N I Subject 7229 VLDQVLLRFEETMLAAEYLLTVYERNLMNISVENSLFGS*SKTPKLQ*TLMHHVDLINKNTVI 7417
Range 1: 4779 to 5366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 75/196(38%) | 0/196(0%) | Minus/Plus |
Query 28 VLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS 615 V +DE +++H G L++ GA E +GD QIPFINR + F V K V+ + SYRCP DVC +LS + CYP V G RS+S + I + DV N DV++ TQ EK + + + + TVHE QGKT V + R K A+DS+FT H +V LSRHT Y ++S Subject 4779 VCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHTVGARYYSIS 5366
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 6990 to 7562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 89/191(47%) | 0/191(0%) | Minus/Plus |
Query 40 LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVY 612 L+DEVY++H+G L + A E + +GD+NQIPF NREK+F M + P + + YT+ SYRCP DVCYLLS M + CYP V + +D+ +RS+ PI + + DV+L TQ EK+++ R + PV T+HEAQGKTF V L R KKADDS+ PH LVG+SRHTRS VY Subject 6990 LIDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHTRSFVY 7562
Range 2: 7343 to 7558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 32/72(44%) | 0/72(0%) | Plus/Minus |
Query 44 TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS 259 T +RVCL+ PT G ESSAFF T NVFP AS V TG L S FS V K TS Subject 7343 TKDRVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS 7558
Grapevine leafroll-associated virus 1, complete genome
Range 1: 7076 to 7303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 38/76(50%) | 0/76(0%) | Minus/Plus |
Query 10 QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSPNTPNT 237 ++++ K + K V+T HEAQGKT+ DVVL R KKADD +F+++PHI+V LSRHTRS+ YA LS +T Subject 7076 EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHTRSMKYAVLSSKMSDT 7303
Range 2: 6845 to 7087 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 41/81(51%) | 0/81(0%) | Minus/Plus |
Query 211 KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR 453 +E + YT SYRCP DVCY+LSSMT K YP V D +RS K PI T +D ADVYL MTQ EK++M+R Subject 6845 EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR 7087
Range 3: 6686 to 6814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 27/43(63%) | 0/43(0%) | Minus/Plus |
Query 484 LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF 612 L+DEVYM+H+G+ QL V A G E + +GD NQIPFINREK F Subject 6686 LIDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF 6814
Range 4: 6691 to 6924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 35/78(45%) | 0/78(0%) | Plus/Minus |
Query 374 LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSS 607 ++VI+DN * TS GHLY++ VY+ S + + + N FSL +NGI*F+SP S P+A T + + P C +YTSS Subject 6691 ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSS 6924
Nucleotide Sequence (1204 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
847.4 | 4461.7 | 35% | 0 | 87% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 16644 to 17846 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
847.4 bits(1843) | 0.0 | 375/401(94%) | 0/401(0%) | Minus/Minus |
Query 2 VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNITYSTKTKNEQKD*PNYFIFLTFVYFKFIEESLPINSSQTFPFSTYAN*SI*IVTNKHTD*RYAYKYIPPITNVTSHDAIVYRYSDGFL*VPHRLLQQLTISTANKHAQISSDNCNPFEDLTLAEQHNIFIVLRNKASRATS*RSRNLKRTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDRLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*SNL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQXXXXXLRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVSAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQQEPKHTQHN 1204 VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRN TYSTK K+EQKD*PNYFIFLTFVYFKFIE LPI TF FSTYAN*SI*IVTNKHTD*RYAYKYIPP+TNVTSHDAIVYRYSDGF *VPHRLLQ+LTISTANKHAQISSDNCNPFE+LTLAEQHNIFIVLRNKASRATS*RSRNL+RTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CID LSIQDIFCFPSFHDTLRITPST**PPEHLPNV*+NL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLV AVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQ+ + +N Subject 16644 VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYN 17846
Range 2: 16670 to 17419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
534.9 bits(1161) | 0.0 | 242/250(97%) | 0/250(0%) | Plus/Plus |
Query 28 VAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEVNXXXXXXXXXXXXXLHRTILIDSIDSAFAYGQVGCLVGIARGLIKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSSNFGIARMLLLTLCCGAL*KCYVVQPVSNLQTGYNYRYLFAH 777 VAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATT LHRTILIDSIDSAFAY QVGCLVGIARGL++HSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFS NFGIARMLLLTLCCGAL*KCYVVQPVSN QTGYNYRYLFAH Subject 16670 VAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAH 17419
Range 3: 17453 to 17845 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.3 bits(518) | 0.0 | 116/131(89%) | 0/131(0%) | Plus/Plus |
Query 811 EGDEALRETHQSSDTLLRRAK*RL*WVGCIYRRNVNRYVY*LLFICSN*HM*KKGRSGNY**VKTLQ*I*NKQK*EK*NN*ASLFVRFSFL*NRLYFEVR*LNSTSRFNTLIFVKLVRKADSDIILV*YNK 1203 EGDEALR+THQSS TLLRRAK*RL* VGCIYRRNVNRYVY*LLFICSN*HM*K+ R N * VK LQ*I*NKQK*EK*NN*ASLFVR S L*NR YFEVR*LN TSRFNTLIFVKLVRK DSDIILV*YNK Subject 17453 EGDEALRKTHQSSGTLLRRAK*RL*RVGCIYRRNVNRYVY*LLFICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV*YNK 17845
Range 4: 16670 to 17629 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
621.9 bits(1351) | 0.0 | 306/320(96%) | 0/320(0%) | Minus/Minus |
Query 28 VPRPSLFLHMLIRAYK**LXXXXXXXXXXXTSHPSQTSLRTTQ*CIATLMGFSKCLIAFYNN*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEI*RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIA*VSKISFASPLSTTHFE*LHRLDDLQNIFRMFNQTSSYAHQTPHLAISEGGVYTVNENCSMQHSRRCSSYVSLHDVNLSLRIVYRCPXXXXXXXXXXXXXXVKCCHVIIVQGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRN 987 V +PS FLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*C ATLMGFSKCLIAFY +*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEI RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALI *VSKISFASPLSTTHFE*LHRLDDLQNIFRM QTSSYAHQTPHL ISEGGVYTVNENCSMQ SRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQ+VKCCHVIIV+GGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRN Subject 16670 VVKPSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRN 17629
Range 5: 17699 to 17845 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 46/49(94%) | 0/49(0%) | Minus/Minus |
Query 1057 FIILY*YNITIGFTD*FYKYQSIKP*GRV*SSYLEI*PILQKRKTNKKT 1203 FIILY*YNITI FTD*FYKYQSIKP*G+V*SSYLEI PILQKRKTNKKT Subject 17699 FIILY*YNITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKT 17845
Range 6: 17325 to 17846 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
343.8 bits(744) | 0.0 | 165/174(95%) | 0/174(0%) | Plus/Plus |
Query 683 *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKREGLGTINR*RLFNKFEINKSKKNEXXXXXXXXXXXXCRIGYISR*DD*TLPHGLIL*YL*N*SVKPIVILY*YSIIN 1204 *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVA+HYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRK EGL T N *+ FNKFEINKSKKNEIIRLVFLFVFRFCRIG+ISR*DD*TLPHGLIL*YL*N*SVK IVILY*YSIIN Subject 17325 *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLTTSNG*KSFNKFEINKSKKNEIIRLVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIIN 17846
Range 7: 16998 to 17264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.3 bits(446) | 0.0 | 85/89(96%) | 0/89(0%) | Plus/Plus |
Query 356 CIEQFSLTV*TPPSLMAKWGVWWA*LEV*LNIRKMFWRSSSRWSYSKCVVERGEAKDILDT*AINALTNT*C*LRPDWPQLKEQTYYER 622 CIEQFSLTV*TPPSLM KWGVWWA*LEV L+IRKMFWRSSSRWSYSKCVVERGEAKDILDT* INALTNT*C*LRPDWPQLKEQTYYER Subject 16998 CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER 17264
Range 8: 16644 to 16928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 85/95(89%) | 0/95(0%) | Plus/Plus |
Query 2 IVLGVFGFLLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPCTIMT*QHFTF*LTRIIALMIRRAGQ 286 I++ + LRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPP TIMT*QHFT *LTRIIALMIRRAGQ Subject 16644 IIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFTL*LTRIIALMIRRAGQ 16928
Range 9: 16672 to 17217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
366.3 bits(793) | 0.0 | 177/182(97%) | 0/182(0%) | Plus/Plus |
Query 30 CES*VYFVWGESRIGVRRFLEASLXXXXXXXXXXXALTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDDCAA*NNSH*QYRLRLRLWPSGVFGGHS*RFD*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILKRSMH*QIHDAN 575 CES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTA TNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD AA*NNSH*QYRLRLRL PSGVFGGHS*RF *TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK SMH*QIHDAN Subject 16672 CES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN 17217
Range 10: 17443 to 17703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 76/87(87%) | 0/87(0%) | Plus/Plus |
Query 801 SCCRRR*GT*RNPSE*RYTIASCEVTFVMGGMYL*A*R*SVCLLVTIYML*LAYVEKGKVWELLIGKDSSINLK*TKVRKMK*LG*S 1061 S CRRR*GT*+NPSE*RYTIASCEVTFV GGMYL*A*R*SVCLLVTIYML*LAYVEK KV + ++GK+ SINLK*TKVRKMK*LG*S Subject 17443 SFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEKEKV*QPVMGKNPSINLK*TKVRKMK*LG*S 17703
Range 11: 17260 to 17391 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 42/44(95%) | 0/44(0%) | Plus/Plus |
Query 618 NESSSQW**VLFKFRDR*DVALDALLRSTIKMLCCSASVKSSNG 749 NESSSQW**VL KFRDR*DVALDALLRSTIKMLCCSASVK SNG Subject 17260 NESSSQW**VLSKFRDR*DVALDALLRSTIKMLCCSASVKFSNG 17391
Range 12: 17743 to 17844 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 34/34(100%) | 0/34(0%) | Plus/Plus |
Query 1101 RGKMTKLYLTV*YSDICKISP*SR**YYISIV** 1202 RGKMTKLYLTV*YSDICKISP*SR**YYISIV** Subject 17743 RGKMTKLYLTV*YSDICKISP*SR**YYISIV** 17844
Range 13: 17503 to 17844 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 99/114(87%) | 0/114(0%) | Minus/Minus |
Query 861 LLYYTNIISLSALRTNFTNIRVLNREVEFSHLTSKYNLFYKNEKRTKRLA*LFHFSYFCLFQIY*RVFTY**FPDLPFFYIC*LEHINSN**TYRLTLRL*IHPTHHKRHFARR 1202 LLYYTNIISLS LRTNFTNIRVLNREV+FSHLTSK NLFYK+E+RTKRLA*LFHFSYFCLFQIY*R+FT+ +L FYIC*LEHINSN**TYRLTLRL*IHPT HKRHFARR Subject 17503 LLYYTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTHYWLLNLLLFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARR 17844
Range 14: 16651 to 16941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 89/97(92%) | 0/97(0%) | Minus/Minus |
Query 9 GSFIAAQRVVSSTLLYALIKM*SAVTSLLYKAERICTIINDRSMML*PRDEISKCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATRTQTHP 299 GSFIAAQRVVSSTLLYALIK+*SAVTSLLY+AERICTIINDRSMML*PRDEIS+CCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFAT P Subject 16651 GSFIAAQRVVSSTLLYALIKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQSP 16941
Range 15: 17257 to 17436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 58/60(97%) | 0/60(0%) | Minus/Minus |
Query 615 *HR*QTCANK*R*L*PV*RFDTG*TT*HFYSAPQQSVKSNILAIPKFEENLLPLTR*FVR 794 *HR*QTCANK*R*L*PV*+FDTG*TT*HFYSAPQQSVKSNILAIPKF ENLLPLTR*FVR Subject 17257 *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*FVR 17436
Range 16: 17008 to 17217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 68/70(97%) | 0/70(0%) | Minus/Minus |
Query 366 VSIMYLLVH*SXXXXXXXXXXXXXRHTSNNSIDLMTSRTSSECLIKPLAMPTKHPTWP*AKAESILSMRI 575 VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECL KPLAMPTKHPTW *AKAESILSMRI Subject 17008 VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRI 17217
Nucleotide Sequence (454 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
337.4 | 1883.1 | 41% | 4.76e-92 | 84% | NC_004667 | |
205.0 | 367.3 | 18% | 3.473e-52 | 32% | NC_022072 | |
156.4 | 156.4 | 30% | 1.451e-37 | 46% | NC_016509 | |
103.7 | 128.6 | 27% | 2.288e-23 | 43% | NC_005065 | |
116.5 | 116.5 | 22% | 1.452e-25 | 44% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 11082 to 11510 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.4 bits(730) | 0.0 | 140/143(98%) | 0/143(0%) | Plus/Plus |
Query 23 SDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL 451 SDVANLPQISKVVFDSTDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV QPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL Subject 11082 SDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL 11510
Range 2: 11082 to 11510 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.8 bits(720) | 0.0 | 139/143(97%) | 0/143(0%) | Minus/Minus |
Query 23 QIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRYLRQISHIT 451 QIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERR I*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLK HYLVR*RIR*SVHQSQSAITCQ+IAVNLSPTSHRTSKIGTVEHD RYLRQISHIT Subject 11082 QIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHIT 11510
Range 3: 11074 to 11511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.1 bits(701) | 0.0 | 141/146(97%) | 0/146(0%) | Minus/Minus |
Query 15 PDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSVHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAENPLPRPLAYSLKCPPVSVRYYLPKYRSXXXXXXXPNI*NRYCRTRP*ISAAN*PHHLDP 452 PDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTS HLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAE+PLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTR *ISAAN*PHH P Subject 11074 PDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P 11511
Range 4: 11083 to 11511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
319.1 bits(690) | 0.0 | 139/143(97%) | 0/143(0%) | Plus/Plus |
Query 24 VMWLICRRYLRSCSTVPILDVRWLVGLRFTAIFWQVIAD*DWWTLXXXXXXXX*WIFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MNRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIW 452 VMWLICRRYL+SCSTVPILDVRWLVGLRFTAI WQVIAD*DWWTL*RIR*RTR*W+FSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*M+RRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIW Subject 11083 VMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIW 11511
Range 5: 11264 to 11512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 82/83(99%) | 0/83(0%) | Minus/Minus |
Query 205 SRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI 453 +RYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI Subject 11264 TRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI 11512
Range 6: 11081 to 11197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 38/39(97%) | 0/39(0%) | Minus/Minus |
Query 22 PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKLATSL 138 PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSL Subject 11081 PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSL 11197
Range 7: 11192 to 11512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
246.2 bits(531) | 0.0 | 105/107(98%) | 0/107(0%) | Plus/Plus |
Query 133 *RTETGGHFNEYANGRGSGFSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*TDVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISG 453 *RTETGGHFNEYANGRGSG SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK* DVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISG Subject 11192 *RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISG 11512
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 12056 to 12475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.0 bits(441) | 0.0 | 80/140(57%) | 0/140(0%) | Plus/Plus |
Query 29 VANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEY 448 +A LP ++ VV+D DFRCSVACGAKVYCD L G LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT Y+V +VVYG++EGE NR++LNE TFR + TD +++LS DGT+SV +NG+ NE+ Subject 12056 IAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEF 12475
Range 2: 12074 to 12367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 31/98(32%) | 0/98(0%) | Minus/Minus |
Query 47 YAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRY 340 + PER F+ +++ L F ++++ I TH V + YW +N RL++++LV I ++QS+ +T IAV T + TSK+ V H Y Subject 12074 FTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASY 12367
Range 3: 12058 to 12159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 21/34(62%) | 0/34(0%) | Minus/Minus |
Query 31 LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKLA 132 LP K SQ T AP ATEHLKS S TTL G A Subject 12058 LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAA 12159
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10882 to 11295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 63/138(46%) | 0/138(0%) | Plus/Plus |
Query 38 LPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL 451 LP +S+ +DS FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+ F +VIFPKG PIP Y + + G + YGI EGE+NR +LNE F+G R + ++D ++ +S DG + + V+G ++KN L Subject 10882 LPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL 11295
Range 1: 10327 to 10629 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 44/101(44%) | 0/101(0%) | Plus/Plus |
Query 29 VANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTF 331 VA + +VVFD+ FR +VA GAKVY D L N GL LVDTL++ + DE+V + V+ KG +P + Y GG++ ++EGE+ AF+NEPT+ Subject 10327 VATCRGVKRVVFDNNTFRIAVAVGAKVYSDSLVSNKGLVLVDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPTY 10629
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 11306 to 11602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 44/99(44%) | 0/99(0%) | Plus/Plus |
Query 47 ISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVS 343 ++ V+++ FR SVA GAK+Y D+L S L L+D+L+ TL+D++ F+ ++FPKG+ IP ++ YTVG +V YG++EGE N +LN+ TF+GV+ Subject 11306 VTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA 11602