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Queries

Nucleotide Sequence (661 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
67
134
201
268
335
402
469
536
603
661

Descriptions

Alignments

Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77

Sequence ID: Length: 4784 Number of Matches: 6

Range 1: 3586 to 4230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
255.8 bits(552) 0.0 111/215(52%) 0/215(0%) Minus/Plus
Query       15  CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALRHILPHQTHSI  659
                C+DFEDFNSQHSV++M+AV+DAY D F H LT EQ  A+ WT  S+ +  + +N      YS KGT+LSGWRLTT MNSVLNY+YT  ++        S+HNGDDVLLG  ++       R A++  IRLQ SKCA+  IAEFLRVD  RGS G YL+R++AT+VHSR+ESKP  +++DL+EA+E+RL D   RG  +   A +R +  H+   I
Subject   3586  CIDFEDFNSQHSVEAMQAVLDAYSDVFDHLLTVEQKYALRWTAQSIGKTSITNNIANCGTYSTKGTMLSGWRLTTMMNSVLNYVYTTHLLGRDRDDTPSVHNGDDVLLGVKNMRVAQEMNRRAQRVGIRLQPSKCAFAGIAEFLRVDRIRGSGGQYLTRSVATIVHSRVESKPKPNVKDLIEAMETRLADLHQRGASIRKIARIREVYYHKLAGI  4230

Range 2: 3885 to 4103 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 31/73(42%) 0/73(0%) Plus/Minus
Query      142  GFDSILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPLC  360
                G DS LECT VA  L +Y P DP + ST +NSA+   AH   C+ +    A L     +     P+ TSSPLC
Subject   3885  GLDSTLECTIVATDLVKYCPPDPLILSTLKNSAMPANAHFEGCNLIPTLCARLFISCATRMFFTPSRTSSPLC  4103

Range 3: 3591 to 3710 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 24/40(60%) 0/40(0%) Plus/Minus
Query      535  VHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKS  654
                VH  A  CS V +W N SL AS TA I  T C LLKSSKS
Subject   3591  VHLKAYFCSTVNRWSNTSL*ASKTACIASTECWLLKSSKS  3710

Range 4: 3765 to 3842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 15/26(58%) 0/26(0%) Plus/Minus
Query      403  V*M*FRTLFMNVVSLQPDSKVPFALY  480
                V* *F TLF+ VVS  P + VPF  Y
Subject   3765  V*T*FNTLFIMVVSRHPLNIVPFVEY  3842

Range 5: 3967 to 4182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 28/72(39%) 0/72(0%) Plus/Minus
Query       63  PHRHPSRH*IIKPRLQCL*KIAHVAGWF*FYPGMYQCCHRPGQILPL*PPLMVDAQELCYSTVCTLAHL*PY  278
                P+  PS   + KPRL    +I HV   F  +P +Y   H   QIL  *P   VD  E   +  CTL  L PY
Subject   3967  PNACPSLVQVRKPRLHRFNQIFHVGFRFGLHP*VYYRRHGSCQILSA*PSDSVDP*EFRDARKCTLRRLQPY  4182

Range 6: 3587 to 3709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 19/41(46%) 0/41(0%) Plus/Minus
Query      536  STLLLPAVPELRNGQTCPCMRLLPPSLTSHCVDC*NLQNLH  658
                STL     P+   GQT  C RL PP+L    V C*+LQ+L+
Subject   3587  STLKRIFAPQSTGGQTRRCRRLKPPALLRPSVGC*SLQSLY  3709

Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4571 Number of Matches: 3

Range 1: 3414 to 4034 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.8 bits(541) 0.0 107/207(52%) 0/207(0%) Minus/Plus
Query       39  CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALRHI  659
                CVDFEDFNSQHS  +M+AV+ AY D +  ++T EQ+ A  WTR S+    V DN G K  Y  KGTL+SGWRLTTF+NSVLNY+YTQ ++        S+HNGDDVLLG  + + V      A K+N+RLQ +KCA+G +AEFLRVDH RG  G YL+R +AT++HSRIESK +    D+++A+E RL + + RG     A  LR +
Subject   3414  CVDFEDFNSQHSNDAMEAVVQAYIDAYSQYMTPEQVQAAMWTRESISNTRVIDNMGTKTSYKTKGTLMSGWRLTTFINSVLNYVYTQALISGSHAMSRSVHNGDDVLLGIRNFKIVRDIVARADKYNVRLQRTKCAFGGLAEFLRVDHMRGDYGQYLTRNIATVMHSRIESKIAVSAVDVVQAMEDRLREYLQRGGVWDYAVQLREL  4034

Range 2: 3416 to 3661 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 46/82(56%) 0/82(0%) Plus/Minus
Query      412  *FRTLFMNVVSLQPDSKVPFALYSILRPWLSCTITLSRDSRVHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKST  657
                *FRT  MNVV+L PD +VPF LY +L P LS T+ L  DSRVH  A +CS V      S+YA  TA I    C LLKSSKST
Subject   3416  *FRTELMNVVNLHPDMRVPFVLYDVLVPMLSITLVLEIDSRVHIAACTCSGVMYCE*ASMYA*TTASIASLECWLLKSSKST  3661

Range 3: 3716 to 3922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 31/69(45%) 0/69(0%) Plus/Minus
Query      151  SILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPL  357
                SIL C  VAI L +Y+P  PR+ ST RNSA  P AH ++C+  L   A      T  +  +P++TSSPL
Subject   3716  SILLCMTVAIFLVKYWP*SPRM*STLRNSAKPPKAHFVLCNLTLYLSALATISRTILKFRIPSSTSSPL  3922

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: Length: 4655 Number of Matches: 7

Range 1: 3469 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 120/205(59%) 0/205(0%) Minus/Plus
Query       45  CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALR  659
                C+DFEDFNSQHS  +MKAVI AY +TF   LT EQ  A  WT  SLD+ I++DN G K  Y +KGTLLSGWRLTTFMNSVLNYIYT  +  +  +  +SLHNGDDVL+G  S+       +NA K+N+R+Q SKCA GAIAEFLR+DHK+G  G YLSRA+AT+VHSRIES+ S+D+RDL++++E+R  D+  RGM   + + LR
Subject   3469  CLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQIINDNVGTKTTYESKGTLLSGWRLTTFMNSVLNYIYTTKLAAEEKRPGDSLHNGDDVLIGVRSMALPQRCMQNAIKYNVRMQSSKCAVGAIAEFLRIDHKQGGNGQYLSRAVATMVHSRIESRVSTDIRDLVQSMENRFADAKGRGMANDIISGLR  4083

Range 2: 3468 to 3977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 95/170(56%) 0/170(0%) Plus/Minus
Query      151  SILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPLCRLFCDCTTSGTIS*V*M*FRTLFMNVVSLQPDSKVPFALYSILRPWLSCTITLSRDSRVHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKSTQ  660
                SILECT VA ALDRY+P  P LWS RRNSAIAP AHLL+C R L  +AF       + +L P  TSSPLC+L     +S     V*+*F TLFM VVSL P+S VP   Y +L P LS  I LS D+ VH  A SCS V++   VS+ A ITAF+   LC*LLKSSKS Q
Subject   3468  SILECTIVATALDRYWPLPPCLWSIRRNSAIAPTAHLLLCIRTLYLMAFCIHLCGRAIDLTPIKTSSPLCKLSPGRFSSAANFVV*I*FNTLFMKVVSLHPESSVPLDSYVVLVPTLSLIICLSNDAAVHIAACSCSGVRQSMKVSI*AYITAFMLPELC*LLKSSKSRQ  3977

Range 3: 3489 to 3788 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 40/100(40%) 0/100(0%) Minus/Plus
Query      340  QQSTQCEVNEGGNRRIQGHVWPFLNSGTAGSSRVDTTIS*QSDRTRQPRP*DGV*CEGDFTVRLEAHHVHEQCSKLHLYSTDSTRRSAVTKQPAQRRRCI  639
                Q STQ   +EG N R+         SGT  S  VD ++  Q+D   Q    D V*   + T  +EA   HEQC +L+LY+  S+RR A     AQRRRC+
Subject   3489  Q*STQLGQHEGCNIRLYRDFHRLSYSGTRASGNVDRSVIRQTDNQ*QRWNQDYV*I*RNATFGVEADDFHEQCVELYLYNEISSRRKASG**LAQRRRCL  3788

Range 4: 3882 to 4010 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/43(37%) 0/43(0%) Minus/Plus
Query      118  CYSRVPARRP*AGVKGVVSVQGDGNIGTFQDRIKTIQRHARSS  246
                C  R+PA RP  G +  V +Q  G+ GTF++   ++  H R S
Subject   3882  CNCRIPADRPQTGRQRPVPIQSSGHNGTFEN*K*SLD*HKRLS  4010

Range 5: 3469 to 3573 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 14/35(40%) 0/35(0%) Plus/Minus
Query      555  LFLS*EMAKRVPVCVYYRLH*LHTVLTVEIFKIYT  659
                LF S  + + + + VYY LH    VLT+E+ K+ T
Subject   3469  LFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKT  3573

Range 6: 3677 to 3784 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 16/36(44%) 0/36(0%) Plus/Minus
Query      344  HRRRCAGCFVTALRLVLSVEYKCNLEHCS*TW*ASS  451
                HR RCA     A  L+L   YK +  HCS*   AS+
Subject   3677  HRLRCASYHPDAFLLLLISLYKYSSTHCS*KSSAST  3784

Range 7: 3844 to 3978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 15/45(33%) 0/45(0%) Plus/Minus
Query      150  FYPGMYQCCHRPGQILPL*PPLMVDAQELCYSTVCTLAHL*PYVV  284
                F   MY C H  G +L +    +V  QE C  T    A L  +V+
Subject   3844  FNSRMYHCGHCSG*VLAVASLFVVYPQEFCNCTHGAFAALHSHVI  3978

Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4605 Number of Matches: 3

Range 1: 3449 to 4063 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 108/205(53%) 0/205(0%) Minus/Plus
Query       45  CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALR  659
                C+DFEDFNSQHS +SM AVI+AY + +    ++EQ++A++WT  S+    V DN G K EY  KGTL+SGWRLTTF+NSVLNY+YT+ ++ +      S+HNGDDVL+G  +L       RNA+K+N+RLQ  K   G+IAEFLRVDH RG  G YL+R +ATLVHSRIES+ +  + DL+EA+E R  +  +RG  M L   LR
Subject   3449  CIDFEDFNSQHSNESMIAVIEAYLEVYQESFSKEQIMALQWTIQSIKETHVIDNMGTKTEYQTKGTLMSGWRLTTFVNSVLNYVYTRELIGESKTVTRSVHNGDDVLVGITNLAVARDVVRNARKYNVRLQTVKSNLGSIAEFLRVDHARGEYGQYLTRNIATLVHSRIESQKAVSLIDLIEAMEDRFGEFFTRGGSMDLITRLR  4063

Range 2: 3598 to 3960 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 57/121(47%) 0/121(0%) Plus/Minus
Query      148  DSILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPLCRLFCDCTTSGTIS*V*M*FRTLFMNVVSLQPDSKVPFALYSILRPWLSCT  510
                DSILE T+VA+ L RY P+ P   ST +NSAI P     + SR L FLAFL     ++R ++P  TSSPL         S   S V  *FRT F  VV  QPD +VPF  YS+  P LS T
Subject   3598  DSILEWTSVAMFLVRYCPYSPLA*STLKNSAIEPRLLFTVWSRTLYFLAFLTTSRATARLVMPTKTSSPLWTDLVTVFDSPISSLVYT*FRTEFTKVVRRQPDIRVPFVWYSVFVPILSIT  3960

Range 3: 3449 to 3574 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 21/42(50%) 0/42(0%) Plus/Minus
Query      534  CPLYCYQLFLS*EMAKRVPVCVYYRLH*LHTVLTVEIFKIYT  659
                CPL  + LFL   +     VC  +  H L  VLTVEIFKIYT
Subject   3449  CPLQSHNLFLGK*LLVYFEVCFDHCNHGLV*VLTVEIFKIYT  3574

Beihai blue swimmer crab virus 3 strain YYSZX17757 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4998 Number of Matches: 3

Range 1: 3791 to 4066 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 46/92(50%) 0/92(0%) Minus/Plus
Query      384  CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPD  659
                C+DFEDFNSQHS  +M+AV++A+ D +   LT +QL    W   S+    V    G    Y  +GTL SGWRLTTFMN+V+NY YTQ +V D
Subject   3791  CLDFEDFNSQHSSGNMRAVLEAFFDVYSQDLTDDQLKLRRWVLDSVLNQYVMPGSGNTHAYRTEGTLFSGWRLTTFMNTVMNYCYTQCLVED  4066

Range 2: 4055 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 43/107(40%) 0/107(0%) Minus/Plus
Query       78  LIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSR  398
                L+     +S  +LH+GDDV +      D +    +A++ NIRL + KC   +I EFLR DH+  +   YL+R ++TLVH R ES   SD+ +LL+A E+RL++ V+R
Subject   4055  LVEDSGAKSYGTLHSGDDVFMSVMEPNDYIRMQFSAERWNIRLSLQKCFMTSIKEFLRKDHQHKAGAQYLARGVSTLVHGRTESVQHSDIIELLKANETRLEEIVNR  4375

Range 3: 3790 to 4065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 44/92(48%) 0/92(0%) Plus/Minus
Query      385  SGTIS*V*M*FRTLFMNVVSLQPDSKVPFALYSILRPWLSCTITLSRDSRVHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKSTQ  660
                S T   V* *F T+FMNVVSLQP++KVP  LY+ + P    T   S  S  H    S S VK     S  AS TA +   LC  LKSSKS Q
Subject   3790  SSTKHWV*Q*FITVFMNVVSLQPENKVPSVLYACVLPDPGITY*FSTLSNTHRRNFS*SSVKS*EYTSKKASSTARMLPELCCELKSSKSKQ  4065

Nucleotide Sequence (518 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
52
104
156
208
260
312
364
416
468
518

Descriptions

Alignments

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: Length: 4655 Number of Matches: 1

Range 1: 1145 to 1657 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 51/171(30%) 0/171(0%) Plus/Plus
Query        5  WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY  517
                +MG++  + NYAS    WR+AF+  +E   +L     RAA+ SV  GKE+ T  N + +++++   +  V +V    ++E GYP S  +  V   VSG+L       +     HL     + + E   + P+DALR+A  YR+FGHE+      +  +   + P     +Y
Subject   1145  FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY  1657

Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4571 Number of Matches: 2

Range 1: 1078 to 1443 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 30/122(25%) 0/122(0%) Plus/Plus
Query        2  MWMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSI  367
                MW G+Y  + N A   + W+  F S+ +  ++L +P+ RAA  SV  G+E  +  N    +  +   + + + +     ++     S  +  + A VSG L+ G +  E++  +HL+G++++
Subject   1078  MWYGLYTLLHNEARTRNSWKTVFSSVADELKMLYTPMMRAACVSVITGREYASCMNHGAGMYIDMSSMYKQKYIGPLVPLDGTVGTSVEIEAIYAPVSGGLVLGTMTGEFETTAHLTGVRAL  1443

Range 2: 1480 to 1542 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/21(43%) 0/21(0%) Plus/Plus
Query      398  KDALRLANAYRVFGHEVVFED  460
                K+   LA  YR+FG+E+  +D
Subject   1480  KELSVLATMYRLFGYELELKD  1542

Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds

Sequence ID: Length: 4605 Number of Matches: 3

Range 1: 1362 to 1499 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 17/46(37%) 0/46(0%) Plus/Plus
Query      245  EGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGED  382
                +G P +  +T +PA VSG+L+ G +   +  + HL G+Q +P+ ED
Subject   1362  DGSPATIPITTIPAPVSGSLVLGTLSGPFATVQHLKGLQKLPVHED  1499

Range 2: 1131 to 1343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 18/71(25%) 0/71(0%) Plus/Plus
Query       11  GIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEV  223
                G+Y  ++N A+    WR+ + S  +   V+ + + RAA  SV  G E+ T  ++ C+  ++   ++  +E+
Subject   1131  GLYTLLDNEAANRENWRDVYTSTIDDLGVIKTHLCRAACVSVVTGLEIGTTMHEGCFTYYDTSDMSFCEEL  1343

Range 3: 1524 to 1613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 10/30(33%) 0/30(0%) Plus/Plus
Query      401  DALRLANAYRVFGHEVVFEDLSSRGLFTPY  490
                + ++LAN YR+FG++  F+ L  + +  P+
Subject   1524  EVVQLANVYRLFGNDTTFQSLYGQKMINPW  1613

Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77

Sequence ID: Length: 4784 Number of Matches: 1

Range 1: 1502 to 1699 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 27/66(41%) 0/66(0%) Plus/Plus
Query      287  YVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFT  484
                YVSGAL AG    + DG  H+   Q+I I +   +   D  RLA AYR FGHE+    +  R  F+
Subject   1502  YVSGALFAGACGLDVDGFEHIMPRQTIEIPKSGNLYRDDVFRLAAAYRYFGHELDISAVRDRTRFS  1699