Queries
Nucleotide Sequence (815 letters)
Query ID: | ds2016-57_12 |
Query definition: | No definition line |
Query length: | 638 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
562.4 | 2250.1 | 26% | 2.797e-158 | 50% | KY352402.1 | |
269.1 | 1062.6 | 40% | 4.089e-124 | 36% | KF688740.1 | |
54.7 | 102.0 | 17% | 5.354e-14 | 29% | JX658570.1 | |
48.7 | 124.2 | 15% | 1.862e-15 | 26% | KX884238.1 | |
48.7 | 124.2 | 15% | 1.862e-15 | 26% | NC_032131.1 |
Alignments
Alternaria alternata partitivirus 1 isolate Avi1 segment RNA1, complete sequence
Sequence ID: KY352402.1 Length: 1833 Number of Matches: 11
Range 1: 818 to 1630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
562.4 bits(1221) | 0.0 | 247/271(91%) | 0/271(0%) | Minus/Plus |
Query 1 FGVEVKVMEMRYCIPLVKRFSDMFGKTPYPVGRNMTKALPFIIDNLLDDKKFGLVTDISKLDTSVGPDWIDWAFSQLKSFFDMGMTASSETRNSHVFDFLHYYFKRTPILLPSGQLIKKAGGVPSGSGFXXXXXXXXXXXXXVYSRLRMGHKKPDIIKMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLGQSIAAGLSNSFFDKCNYWMEELVTL 813 + EVKV+EMRYCIPL+KRFS+MFGKTPYPVGRNMTKALPFIID+LL DKKFGLVTDISKLDTSVGPDWIDWAFSQLKSFFD G T SSE R+S+VFDFLH+YFKRTPILLPSGQL+KKAGGVPSGSGFTQLVDTLVTTLATVYSRLRMGH K I KMFVVGDDMATSVDHDFSIEEFSH M QLGFEINPSKVMFS+KGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQR LGQSIAAGLSNSFFDKCNYWMEELVTL Subject 818 YPAEVKVIEMRYCIPLMKRFSEMFGKTPYPVGRNMTKALPFIIDHLLQDKKFGLVTDISKLDTSVGPDWIDWAFSQLKSFFDFGFTLSSERRDSNVFDFLHFYFKRTPILLPSGQLVKKAGGVPSGSGFTQLVDTLVTTLATVYSRLRMGHTKDQIFKMFVVGDDMATSVDHDFSIEEFSHIMGQLGFEINPSKVMFSNKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRILGQSIAAGLSNSFFDKCNYWMEELVTL 1630
Range 2: 826 to 1422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
333.3 bits(721) | 0.0 | 155/199(78%) | 0/199(0%) | Plus/Minus |
Query 209 MPLSENMTLEGLISKPSWLI**ENSSIEKSWSTDVAISSPTTNILIMSGFLCPIRKRE*TVANVVTRVSTSWVKPEPEGTPPAFLIN*PEGKRIGVRLK***RKSKTCELRVSEEAVMPMSKNDLSCEKAQSIQSGPTDVSSLLISVTRPNFLSSSRLSIMKGSALVILRPTG*GVLPNMSEKRLTKGMQ*RISMTLTS 805 MPL ENMTLEG ISKPSW + ENSSIEKSWSTDVAISSPTTNIL + F+ PI +RE*TVANVVTRVSTSWVKPEP+GTPPAFL + PEGKRIGVRLK* *RKSKT R S+E+V P SK DLS EKAQSIQSGPT+VSS +SVTRPNFLS R S++KG A VILRPTG*GVLPN+SEKR GMQ*RISMTLTS Subject 826 MPLLENMTLEGFISKPSWPMMWENSSIEKSWSTDVAISSPTTNILNIWSFV*PILRRE*TVANVVTRVSTSWVKPEPDGTPPAFLTSWPEGKRIGVRLK*K*RKSKTLLSRRSDESVKPKSKKDLS*EKAQSIQSGPTEVSSFEMSVTRPNFLSCKRWSMIKGRAFVILRPTG*GVLPNISEKRFINGMQ*RISMTLTS 1422
Range 3: 1489 to 1626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 41/46(89%) | 0/46(0%) | Plus/Minus |
Query 5 VTSSSIQ*LHLSKNELDRPAAMDCPKLR*RERFGFPTYFSGKKAVW 142 VTSSSIQ*LHLSKNEL+ PAAMD P +R*RERFGFPTYFSGKKAVW Subject 1489 VTSSSIQ*LHLSKNELESPAAMD*PSIR*RERFGFPTYFSGKKAVW 1626
Range 4: 827 to 1630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
357.1 bits(773) | 0.0 | 163/268(61%) | 0/268(0%) | Plus/Minus |
Query 1 ECDKLFHPIVALVEE*VG*TSGDGLSQIALT*TVWVSDILFRKESSLEKFFDGTVKSTTPFGVAEELEFYALVREHDFGRVNFKTELAHIMRKLLD*EIVVDGCCHIVANYKHLNNVGLLVSHT*A*VNRSQCRDKSVNELGKAGTGRNATRLLDQLTRR*ENRCTFEVVMKKVENM*IASLRRSCHAHVEERLELRESPVDPIWTN*CIKLTDIGDKTEFLIIK*VVNNER*CLSHIATYRVRGLAKHVGKAFN*RYAVTHFHDFDF 804 E +KLFHPIV VEE*+G +GL+Q +LT*T+WVS+ILFRKESSLE+F D +K+TT FGV E+LEFYALVREHDFGRV FKTELAH + KLLD EIVVD C HIVAN KHL + V+H+ VN SQC +KSVNELGK GTGR+AT LLDQL RR*ENRC F+V +KKVE++ I R C VEE LELRESP+ PI T+ I+ ++ ++ + LI++ +V+++R L HI T RVR AKH+ +AF+* AVTH +DFDF Subject 827 EGNKLFHPIVTFVEE*IGEPCSNGLTQYSLT*TIWVSNILFRKESSLEEFLDWAIKATTTFGVTEKLEFYALVREHDFGRVYFKTELAHDVGKLLDREIVVDRCGHIVANNKHLEYLVFCVTHSKTRVNSSQCCNKSVNELGKTGTGRDATSLLDQLARR*ENRCAFKVEVKKVEDIAITPF*RKCETEVEEGLELRESPIYPIRTDRGIEF*NVSNEAKLLILQEMVDDKRQSLCHITTDRVRCFAKHLREAFH*WNAVTHLNDFDF 1630
Range 5: 1095 to 1622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.8 bits(528) | 0.0 | 117/176(66%) | 0/176(0%) | Minus/Plus |
Query 9 IHMFSTFFITTSNVHLFSYLLVN*SRRRVAFLPVPALPNSLTLLSRHWLRFTHAYVWDTRSPTLLRCL*LATIWQHPSTTISQSRSFLII*ASSVLKLTLPKSCSLTRA*NSSSSATPNGVVDFTVPSKNFSRLLSFLKSMSETQTVHVNAIWDNPSPLVYPTHSSTSATIGWKSL 536 I M STFF +T N HLFSYL N SRR VA PVP LPNSLTLL +HWL FT W T+ RCL LATIW H STTIS SRSF ASSVLK TLPKSCSLTRA*NSS S TPN VV F S+N S+LLSFLKSM ETQ VHVN W NP P HSST+ TIGWKSL Subject 1095 IAMSSTFFTSTLNAHLFSYLRANWSRRLVASRPVPVLPNSLTLLLQHWLLFTLVLEWVTQKTKYSRCLLLATIWPHLSTTISLSRSFPTSWASSVLK*TLPKSCSLTRA*NSSFSVTPNVVVAFIAQSRNSSKLLSFLKSMLETQIVHVNEYWVNPLLQGSPIHSSTNVTIGWKSL 1622
Range 6: 829 to 945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 22/39(56%) | 0/39(0%) | Minus/Plus |
Query 686 SQSHGNALLHTFS*TLFRHVWQDPLPCRSQYD*GTTFHY 802 SQSH +ALLH+ + TL VWQ+ LPCRS YD G+ F++ Subject 829 SQSH*DALLHSINETLL*DVWQNTLPCRS*YDKGSAFYH 945
Range 7: 1003 to 1062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 14/20(70%) | 0/20(0%) | Minus/Plus |
Query 569 YISWSRLDRLGFLAAQVVLR 628 Y+ S LDRLGFL+AQV+LR Subject 1003 YLCRS*LDRLGFLSAQVLLR 1062
Range 8: 1152 to 1625 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.2 bits(483) | 0.0 | 105/158(66%) | 0/158(0%) | Plus/Minus |
Query 6 *QALPSNSCTCRRMSWIDQRRWIVPNCVDVNGLGFRHTFQERKQSGEVLRWDGKVHHPVWSSRGT*VLCPCQRT*LWKG*FQNRAGSYNEKTPRLRNRGRRMLPYRRQLQTS**CRASCVPYVSVSKP*PMS*QECQRVG*SRNRKERHPPS*SIDQK 479 *QALPSNS CRRM+W ++WI P VDVN LGF+HTFQERKQ G V R K HH VWS+R T*VLCPC RT*LWKG FQNRAG KTPR RNRGR+M PYRRQ QTS* C P+ SK *PM *QECQRVG*+RNR RH PS* + K Subject 1152 *QALPSNSYICRRMNWRALQQWIDPVFVDVNDLGFQHTFQERKQFGGVPRLGDKGHHHVWSNRET*VLCPC*RT*LWKGLFQNRAGP*CGKTPR*RNRGRQMWPYRRQQQTS*IFGLLCDPF*DESKQ*PML*QECQRVG*NRNRTGRHQPS*PVGPK 1625
Range 9: 828 to 1061 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 39/78(50%) | 0/78(0%) | Plus/Minus |
Query 570 RRTT*AARKPSRSNLDQLMYQAY*YR*QDRISYHQVGCQ**KVVP*SYCDLQGKGSCQTCRKSV*LKVCSNAFP*L*L 803 RR T*A RKP+ SN D+ Y+ +*+ + SY +**K P SY D QGK CQT ++SV L CSNA *L*L Subject 828 RRRT*AERKPNLSNQDRQRYRVLKCQ*RGQTSYPARDGR**KAEPLSYYDRQGKVFCQTSQRSVSLMECSNASQ*L*L 1061
Range 10: 1153 to 1626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.0 bits(513) | 0.0 | 103/158(65%) | 0/158(0%) | Minus/Plus |
Query 5 FWSIDQEGGWRSFRFRLYPTR*HSCHDIGYGLLTLTYGTQEARHY*DVCSWRRYGNIRRPRFLNRGVFSLYEPARF*N*PFQSHVL*QGHRTQVPRLLQTGWWTLPSHRRTSPDCFLS*KVCRKPKPFTSTQFGTIHRRWSIQLILRQVQLLDGRACH 478 F QEG WR RFR YPTR*HSC++IGY LL+ G+ + + DVC WRRYG+I RPRFL RGVF + PARF*N PFQSHVL*QGHRTQV RLLQT WW L +R T P+CFLS*KVC KPK FTST G+IH ++Q ILRQ+ LLDGRAC+ Subject 1153 FGPTGQEGWWRPVRFRFYPTR*HSCYNIGYCLLSS*NGSHKRPNIQDVCCWRRYGHICRPRFLYRGVFPHHGPARF*NKPFQSHVL*QGHRTQVSRLLQTWWWPLSPNRGTPPNCFLS*KVCWKPKSFTSTNTGSIHCCRALQFILRQM*LLDGRACY 1626
Botryosphaeria dothidea partitivirus 1 isolate LW 1 segment RNA 1 putative RNA dependent RNA polymerase (RdRp) gene, complete cds
Sequence ID: KF688740.1 Length: 1823 Number of Matches: 9
Range 1: 818 to 1288 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
269.1 bits(581) | 0.0 | 119/157(76%) | 0/157(0%) | Minus/Plus |
Query 343 FGVEVKVMEMRYCIPLVKRFSDMFGKTPYPVGRNMTKALPFIIDNLLDDKKFGLVTDISKLDTSVGPDWIDWAFSQLKSFFDMGMTASSETRNSHVFDFLHYYFKRTPILLPSGQLIKKAGGVPSGSGFXXXXXXXXXXXXXVYSRLRMGHKKPDII 813 + EVKV+EMRY IPL++RF FGK PYPVG N+TKALPFIID+LL+D K G VTD+SKLDTSVGPDWIDWAFS LK F+ MGMT SSETRNSHVFDFLHYYFKRTPIL PSGQL++K+GGVPSGSGFTQ+VDTL T L T YS LRMG+++ DII Subject 818 YPAEVKVIEMRYVIPLLERFKSQFGKIPYPVGVNLTKALPFIIDHLLNDGKHGFVTDVSKLDTSVGPDWIDWAFSFLKDFYYMGMTESSETRNSHVFDFLHYYFKRTPILFPSGQLVRKSGGVPSGSGFTQIVDTLCTLLMTTYSMLRMGYQEDDII 1288
Range 2: 1292 to 1624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 80/111(72%) | 0/111(0%) | Minus/Plus |
Query 10 KMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLGQSIAAGLSNSFFDKCNYWMEEL 342 K+F VGDDMATSV F +E+FS Y+ QLGFEIN KVMFS++GIELKFLGYSK GG ++RPI+ELLQTA+FPEKYVGNP RSRQR LGQ++A+GL+N F K NYWMEEL Subject 1292 KIFAVGDDMATSVPSSFDVEQFSFYVGQLGFEINVDKVMFSNRGIELKFLGYSKYGGNIWRPIDELLQTAYFPEKYVGNPERSRQRILGQTLASGLTNGFLSKVNYWMEEL 1624
Range 3: 826 to 1287 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 95/154(62%) | 0/154(0%) | Plus/Minus |
Query 344 IMSGFLCPIRKRE*TVANVVTRVSTSWVKPEPEGTPPAFLIN*PEGKRIGVRLK***RKSKTCELRVSEEAVMPMSKNDLSCEKAQSIQSGPTDVSSLLISVTRPNFLSSSRLSIMKGSALVILRPTG*GVLPNMSEKRLTKGMQ*RISMTLTS 805 IMS PI E* V V VST WVKP+PEGTPP F + PEGKRIGVRLK** +KSKT ELRVS ++VMPM L E AQSIQSGPTDVS+ SVT+P F S ++ S+MKG ALV L PTG G+ PN KR +GM *RIS+TLTS Subject 826 IMSSSW*PILSIE*VVIKSVQSVSTIWVKPDPEGTPPDFRTSCPEGKRIGVRLK**CKKSKTWELRVSLDSVMPM**KSLRKENAQSIQSGPTDVSNFDTSVTKPCFPSFNK*SMMKGRALVRLTPTGYGIFPN*DLKRSRRGMT*RISITLTS 1287
Range 4: 1495 to 1623 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 26/43(60%) | 0/43(0%) | Plus/Minus |
Query 11 SSSIQ*LHLSKNELDRPAAMDCPKLR*RERFGFPTYFSGKKAV 139 SSSIQ*L L + RP A P +R RER G PTYFSGK AV Subject 1495 SSSIQ*LTLERKPFVRPEARV*PSIRCRERSGLPTYFSGKYAV 1623
Range 5: 1294 to 1425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 24/44(55%) | 0/44(0%) | Plus/Minus |
Query 209 MPLSENMTLEGLISKPSWLI**ENSSIEKSWSTDVAISSPTTNI 340 +P EN+TL LISKPS * EN S K T+VA+SSPT I Subject 1294 IPRFENITLSTLISKPSCPT*KENCSTSKLEGTEVAMSSPTAKI 1425
Range 6: 827 to 1288 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 67/154(44%) | 0/154(0%) | Plus/Minus |
Query 343 NNVGLLVSHT*A*VNRSQCRDKSVNELGKAGTGRNATRLLDQLTRR*ENRCTFEVVMKKVENM*IASLRRSCHAHVEERLELRESPVDPIWTN*CIKLTDIGDKTEFLIIK*VVNNER*CLSHIATYRVRGLAKHVGKAFN*RYAVTHFHDFDF 804 +NV LLV+H+ V R Q K ++ LG+ +G + +RL ++L+RR ENR EVV+++VE++ IA L CHAHV E L+ E PVDP+ TN + L IGDKT II+ V+++ER L I + RVR L + +AF VTH ++ DF Subject 827 DNVILLVTHSKHRVGRHQECTKRIDYLGETRSGGDTSRLPNELSRREENRSALEVVVQEVEDVGIARLA*FCHAHVVEVLKKGERPVDPVRTNGRV*LRHIGDKTVLSIIQQVIDDERESLGKIDSDRVRNLPELRFEAFEEGNDVTHLNNLDF 1288
Range 7: 829 to 1287 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 57/153(37%) | 0/153(0%) | Minus/Plus |
Query 344 SQSHGNALLHTFS*TLFRHVWQDPLPCRSQYD*GTTFHY*QPT***EIRSCHRYQ*A*YISWSRLDRLGFLAAQVVLRHGHDSFF*DSQFTCFRXXXXXXXXXXXXXTFWSIDQEGGWRSFRFRLYPTR*HSCHDIGYGLLTLTYGTQEARHY 802 SQ + +AL H+ TL + +D +PCRSQ G+ FH+ * + R CHR ++ WS LDRLG L + +L HGHD D+QF RL +LLLQ ++YSL FW+ E G R +P ++ + + LL G HY Subject 829 SQGY*DALRHSPPRTLQISIREDSVPCRSQSYQGSPFHHRSLVE*WKARFCHRCVEVRHVRWS*LDRLGVLLS*GLLLHGHDRIKRDAQFPRLRLLALLLQAHSYSLPFWTTRSEVGRCPLRIWFHPDSRYALYTLDDDLLYA*NGLPRG*HY 1287
Range 8: 1293 to 1628 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 40/112(36%) | 0/112(0%) | Minus/Plus |
Query 6 RCL*LATIWQHPSTTISQSRSFLII*ASSVLKLTLPKSCSLTRA*NSSSSATPNGVVDFTVPSKNFSRLLSFLKSMSETQTVHVNAIWDNPSPLVYPTHSSTSATIGWKSLS 341 + L LAT W PS S S * +S K L + CS T +S+S AT N VV V + + + L+SM T+ N P P V T SS TIGW+S + Subject 1293 KSLLLATTWLPPSLLASMLSSSPFT*DNSASKSMLIR*CSQTAVLSSNSWATQNTVVISGVLLTSCFKQRTSLRSMLATRNALDNVYSVKPWPQV*QTASSPKLTIGWRSFA 1628
Range 9: 927 to 1109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 27/61(44%) | 0/61(0%) | Plus/Minus |
Query 522 RKHVNCESQKKLSCPCRRTT*AARKPSRSNLDQLMYQAY*YR*QDRISYHQVGCQ**KVVP 704 R+ NC S+ LSCPC R+ * R PSRS+ DQ +R*Q+R +H +**K P Subject 927 RRRGNCASRLILSCPCSRSP*ERRTPSRSSQDQRTCLTSTHR*QNRAFHHSTSDR**KGEP 1109
Grapevine partitivirus isolate 3138 03 561 RNA dependent RNA polymerase (RdRp) gene, complete cds
Sequence ID: JX658570.1 Length: 1775 Number of Matches: 2
Range 1: 1219 to 1530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 30/104(29%) | 0/104(0%) | Minus/Plus |
Query 40 DIIKMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLGQSIAAGLSNSFF 351 +I + V+GDD A +F + G + P K + +E K LG + RGG +RP EE + A +PE V + + S R +G I + + F Subject 1219 EIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTYRGGRPHRPTEEWFKLALYPEGGVSSLDVSLTRLVGLWIGGAMHDLHF 1530
Xinzhou partiti like virus 1 strain XZSJSC65291 segment Seg 1 RdRp gene, complete cds
Sequence ID: KX884238.1 Length: 1523 Number of Matches: 3
Range 1: 752 to 892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 20/47(43%) | 0/47(0%) | Minus/Plus |
Query 592 PYPVGRNMTKALPFIIDNLLDDKKFGLVTDISKLDTSVGPDWIDWAF 732 P +G++M K LP+ ++ LL D F DIS D+SV +IDW F Subject 752 PIYIGKDMFKELPYTLNRLLRDNFFAYCIDISAFDSSVNQIFIDWFF 892
Range 2: 1112 to 1366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 22/85(26%) | 0/85(0%) | Minus/Plus |
Query 94 IIKMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRS 348 ++ +V+GDD + +E F + GF++N K + S E+ FLG++ G L R L A E + N +++ Subject 1112 VVPTYVLGDDSIFCHHNPNHLESFRVLFEEFGFKLNVRKTIVSKSSQEIVFLGHNFYGSRLTRDDFTLACLAIHTETPIVNSSQT 1366
Xinzhou partiti like virus 1 strain XZSJSC65291 segment Seg 1 RdRp gene, complete cds
Sequence ID: NC_032131.1 Length: 1523 Number of Matches: 3
Range 1: 752 to 892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 20/47(43%) | 0/47(0%) | Minus/Plus |
Query 592 PYPVGRNMTKALPFIIDNLLDDKKFGLVTDISKLDTSVGPDWIDWAF 732 P +G++M K LP+ ++ LL D F DIS D+SV +IDW F Subject 752 PIYIGKDMFKELPYTLNRLLRDNFFAYCIDISAFDSSVNQIFIDWFF 892
Range 2: 1112 to 1366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 22/85(26%) | 0/85(0%) | Minus/Plus |
Query 94 IIKMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRS 348 ++ +V+GDD + +E F + GF++N K + S E+ FLG++ G L R L A E + N +++ Subject 1112 VVPTYVLGDDSIFCHHNPNHLESFRVLFEEFGFKLNVRKTIVSKSSQEIVFLGHNFYGSRLTRDDFTLACLAIHTETPIVNSSQT 1366
Nucleotide Sequence (365 letters)
Query ID: | ds2016-57_12 |
Query definition: | No definition line |
Query length: | 638 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
89.5 | 232.8 | 22% | 4.27e-30 | 52% | KY352403.1 | |
49.2 | 49.2 | 10% | 0.0002755 | 46% | KF688741.1 |
Alignments
Alternaria alternata partitivirus 1 isolate Avi1 segment RNA2, complete sequence
Sequence ID: KY352403.1 Length: 1680 Number of Matches: 4
Range 1: 969 to 1175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 36/69(52%) | 0/69(0%) | Plus/Plus |
Query 157 SKSDYLEINGKWYNVGLPNSELKKLPGYKLEGDYLTEVEQLMDQARSAKRERITPRFDPAYEPTSYKIS 363 +++DY +I+ KWY+ GL + ++K YK E YL EV +LM QA++AKRERITP D AY+P SY IS Subject 969 NRADYEQIDDKWYHTGLDPTAVRKTTSYKTETGYLEEVNELMKQAKAAKRERITPILDSAYKPESYTIS 1175
Range 2: 813 to 962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 28/50(56%) | 0/50(0%) | Plus/Plus |
Query 4 LKKEELIRRISQAKRNASFVR*AVDDGRAEVVNDRVYLYPEVSVDVVNKA 153 +KK++LIRRI+ AKRNA+ V A+DDGRA ++++RVY YP V V V+ A Subject 813 VKKQDLIRRIATAKRNANSVSSAIDDGRAVLLDNRVYFYPVVDVKEVDAA 962
Botryosphaeria dothidea partitivirus 1 isolate LW 1 segment RNA 2 putative coat protein (CP) gene, complete cds
Sequence ID: KF688741.1 Length: 1623 Number of Matches: 1
Nucleotide Sequence (328 letters)
Query ID: | ds2016-57_12 |
Query definition: | No definition line |
Query length: | 638 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
183.4 | 813.8 | 46% | 8.531e-45 | 64% | KY352403.1 | |
110.6 | 214.7 | 28% | 7.156e-23 | 58% | KF688741.1 |
Alignments
Alternaria alternata partitivirus 1 isolate Avi1 segment RNA2, complete sequence
Sequence ID: KY352403.1 Length: 1680 Number of Matches: 6
Range 1: 188 to 502 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 85/105(81%) | 0/105(0%) | Minus/Minus |
Query 8 PSASNLTFSIRWYSWRAEQWRNSSYEKRAGIEGFTEMRRW*DELTMWKYLSVLNGDKILSR*PERLKP*LSRAALPSA*PGVDLEDEDSVFELEDFGGPDPLPLP 322 P+ASNLTFSIR Y+WRAEQ RNSSY KR GIEG T +RR *D LTMWK LSVLNGDKILSR PERLKP*L RAALPSA PGVDLE E SVFELED G P PLPLP Subject 188 PNASNLTFSIR*YNWRAEQ*RNSSYVKRLGIEGLTLIRR**DALTMWKNLSVLNGDKILSRYPERLKP*LRRAALPSAKPGVDLEFEVSVFELEDLGLPFPLPLP 502
Range 2: 267 to 506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 71/80(89%) | 0/80(0%) | Plus/Plus |
Query 87 YAEGNAAXXXXXXXXXXXRERILSPFKTDKYFHMVSSSYQRLISVKPSIPARFSYEEFLHCSALQLYQRMENVKFDALGI 326 +AEGNAALLSYGLSLSGYRERILSPFKTDK+FH+VS+SYQRLI+VKPSIP+RF+YEEFLHCSALQLYQR+ENVKFDALG+ Subject 267 FAEGNAALLSYGLSLSGYRERILSPFKTDKFFHIVSASYQRLINVKPSIPSRFTYEEFLHCSALQLYQRIENVKFDALGV 506
Range 3: 194 to 496 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 65/101(64%) | 0/101(0%) | Plus/Plus |
Query 14 GQRVWPPKVLEFEDRVFVL*IDTRLCRGQCCPT*LRFEPFWLPRENLVAV*D*QVLPHGEFVLPTSHLGETLDSCSFLI*GISPLLRSPTVPTYGECQI*C 316 GQR +VLEFEDR F L IDTRLCRGQCCP L FE W+ RENLVAV*D*QVLPH E VL T LDS F +* IS LLRSP V TY + Q+*C Subject 194 GQRERQSQVLEFEDRDFELQIDTRLCRGQCCPPQLWFESLWVSRENLVAV*D*QVLPHCECVLSTPDQC*ALDS*PFHV*RISSLLRSPIVSTY*KRQV*C 496
Range 4: 184 to 495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 70/104(67%) | 0/104(0%) | Plus/Plus |
Query 4 SRVRAKGLAXXXXXXXXXXXXXXNRHPAMPRAMLPYLATV*AFLVTARESCRRLRLTSTSTW*VRPTNVSSR*NPRFLLVSHMRNFSIAPLSNCTNVWRMSNLM 315 + RAKG A SPRVRRP LR NRHPA+PRAMLP A V* L ARESCRRLRLTS+ST *VRP N S +PRFL VS M+NF IAPLSNC NV + S+LM Subject 184 TEARAKGKAIPSPRVRRPRLRTPNRHPALPRAMLPSSAMV*VSLGIARESCRRLRLTSSSTL*VRPINA*SMLSPRFLAVSRMKNFFIAPLSNCINVLKTSSLM 495
Range 5: 264 to 494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 52/77(68%) | 0/77(0%) | Minus/Minus |
Query 84 IKFDILHTLVQLESGAMEKFLI*ETSRNRGFHRDETLVGRTHHVEVLVSLKRRQDSLAVTRKAQTVAK*GSIALGIA 314 IK D+ +TL+QLESGAM+KF I ET+RNRG + D+ L+GRTH+VE LVSLKRRQDSLA+ R+ QT+A+ GSIALG A Subject 264 IKLDVFNTLIQLESGAMKKFFIRETARNRGLNIDQALIGRTHNVEELVSLKRRQDSLAIPRETQTIAEEGSIALGKA 494
Range 6: 253 to 495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 52/81(64%) | 0/81(0%) | Minus/Minus |
Query 73 HQI*HSPYVGTVGERSNGEIPHMRNEQESRVSPR*DVGRTNSPCGSTCQS*TATRFSRGNQKGSNRS*VGQHCPRHSRVSI 315 HQ * YV T+GERSN EI H N ESR V RT+S CG TCQS*TATRFSR Q+ SN S* GQHCPR SRVSI Subject 253 HQT*RFQYVDTIGERSNEEILHT*NG*ESRA*H*SGVDRTHSQCGRTCQS*TATRFSRDTQRDSNHS*GGQHCPRQSRVSI 495
Botryosphaeria dothidea partitivirus 1 isolate LW 1 segment RNA 2 putative coat protein (CP) gene, complete cds
Sequence ID: KF688741.1 Length: 1623 Number of Matches: 2
Range 1: 232 to 471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 52/80(65%) | 0/80(0%) | Plus/Plus |
Query 87 YAEGNAAXXXXXXXXXXXRERILSPFKTDKYFHMVSSSYQRLISVKPSIPARFSYEEFLHCSALQLYQRMENVKFDALGI 326 ++EG + L +YGLS+SG +ERILSPFK DK+FH V S+Q+L+SVKPS+P RFS E+ H SALQLYQR+E VKFD+LGI Subject 232 FSEGTSVLQNYGLSVSGRKERILSPFKADKFFHFVEQSWQKLVSVKPSLPNRFSLAEYRHASALQLYQRIEAVKFDSLGI 471
Range 2: 195 to 473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 54/93(58%) | 0/93(0%) | Minus/Minus |
Query 50 LIPSASNLTFSIRWYSWRAEQWRNSSYEKRAGIEGFTEMRRW*DELTMWKYLSVLNGDKILSR*PERLKP*LSRAALPSA*PGVDLEDEDSVF 328 LIP SNLT SIRWYS AE R S+ E R G G T+ D T WK LS LNGD+ILS PE L P* R +PS PGVDLE EDSVF Subject 195 LIPRESNLTASIRWYS*SAEACRYSARENRFGRLGLTDTSFCHDCSTKWKNLSALNGDRILSLRPETLSP*F*RTEVPSENPGVDLELEDSVF 473