Nucleotide Sequence (304 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
103.2 | 202.1 | 45% | 7.616e-22 | 33% | NC_009947 | |
99.6 | 149.2 | 30% | 9.666e-21 | 41% | NC_007539 | |
112.9 | 168.9 | 31% | 9.663e-25 | 40% | NC_005978 | |
96.8 | 155.6 | 30% | 6.499e-20 | 49% | NC_033277 | |
45.1 | 45.1 | 17% | 0.0002509 | 36% | NC_005074 |
Alignments
Amasya cherry disease associated chrysovirus segment 1, complete sequence
Range 1: 2310 to 2612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 41/101(41%) | 0/101(0%) | Plus/Plus |
Query 2 DVDEAFTDGADPLRVLHIMNGIGFDAKMIKQMIAGKSEFFRVTITEEGTFASVTRGLASFCAGDWETSGRTTIREKVQSTLDQVSKLVRRGLDHEIGNILI 304 D+D + D +++ +M + F+A+ IKQMI SEFFR+T T G + S TR LA F +G+WE SG +RE++ +DQ++K+ RRG E+G+ L+ Subject 2310 DIDGGIRNMGDGVKMPVVMEKMQFEAQKIKQMIGIDSEFFRITFTASGAYGSATRALARFVSGNWEGSGVIPLRERISGLMDQMAKICRRGFHQEVGHTLL 2612
Range 2: 2352 to 2603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 28/84(33%) | 0/84(0%) | Minus/Minus |
Query 44 VPDLVVQSPSYKFGHLIKRRLYFLSYSSPA*CLPVTSTETCQPPCHTCKRTFLRDCNPEELTLASNHLLDHLCVKTNSVHNVKH 295 VPDL+V+ F HLI + Y L+ P+T + C C T T + NPEE + SNHL + L ++ + +H+ +H Subject 2352 VPDLLVKPTPTYFCHLIHQPRYPLTQWYNTATFPIT*DKPC*CSCRTTISTTCCEGNPEEFGIYSNHLFNLLSLELHLLHHHRH 2603
Range 3: 2372 to 2599 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 33/76(43%) | 0/76(0%) | Minus/Minus |
Query 64 PISWSNPLLTSLDT*SSVDCTFSLIVVLPDVSQSPAQKLASPLVTLANVPSSVIVTLKNSLLPAIICLIIFASKPI 291 P SW NP L *S S + P SQ P LAS V L P +V V LKNS IICLI AS I Subject 2372 PTSW*NPRLHIFAI*SISPDILSRNGITPLPSQLPETNLASARVALP*APLAVKVILKNSESIPIICLIF*ASNCI 2599
Penicillium chrysogenum virus segment 1, complete genome
Range 1: 2446 to 2733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 45/96(47%) | 0/96(0%) | Plus/Plus |
Query 2 DVDEAFTDGADPLRVLHIMNGIGFDAKMIKQMIAGKSEFFRVTITEEGTFASVTRGLASFCAGDWETSGRTTIREKVQSTLDQVSKLVRRGLDHEI 289 D+D ++ A L +M+ + F A KQM +SEFFR TI + +AS TR LASF AGDWE +GR T++E+V S LDQ++KL RRG E+ Subject 2446 DIDLGLSEPAVMPWFLEVMDAMLFKANKWKQMFGTRSEFFRNTICDGRVYASPTRALASFVAGDWEGAGRATVKERVVSLLDQIAKLRRRGCSEEL 2733
Range 2: 2445 to 2720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 38/92(41%) | 0/92(0%) | Minus/Minus |
Query 1 NPLLTSLDT*SSVDCTFSLIVVLPDVSQSPAQKLASPLVTLANVPSSVIVTLKNSLLPAIICLIIFASKPIPFIM*STRSGSAPSVNASSTS 276 +P S *SS T SL V P SQSPA KLA+ V LA S IV LKNS IC +FA I I + +A S++ S S Subject 2445 HPRRRSFAI*SSRLTTLSLTVARPAPSQSPATKLANARVGLA*TRPSHIVFLKNSDRVPNICFHLFALNNIASITSKNQGITAGSLSPRSMS 2720
Range 1: 2428 to 2706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 46/93(49%) | 0/93(0%) | Plus/Plus |
Query 2 DVDEAFTDGADPLRVLHIMNGIGFDAKMIKQMIAGKSEFFRVTITEEGTFASVTRGLASFCAGDWETSGRTTIREKVQSTLDQVSKLVRRGLD 280 DVD+ F D R+L +++ +GF+A KQMI SEFFRVTIT G +AS RGLA+F AG+WE +G +++E+V S +D KL+RRG+D Subject 2428 DVDQEFAQPEDAYRMLAVLDRMGFEATKSKQMIGRNSEFFRVTITRTGAYASPVRGLATFVAGNWEGTGNVSVKERVVSLVDMAWKLIRRGVD 2706
Range 2: 2427 to 2705 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 37/93(40%) | 0/93(0%) | Minus/Minus |
Query 1 SNPLLTSLDT*SSVDCTFSLIVVLPDVSQSPAQKLASPLVTLANVPSSVIVTLKNSLLPAIICLIIFASKPIPFIM*STRSGSAPSVNASSTS 279 S P L S S+ T S + P SQ PA +A+P LA P V+VT KNS IIC ASKPI S S+ N+ STS Subject 2427 STPRLISFQAISTKLTTLSFTLTFPVPSQFPATNVANPRTGLAYAPVLVMVTRKNSEFLPIICFDFVASKPILSSTASIL*ASSGCANS*STS 2705
Isaria javanica chrysovirus 1 isolate IjCV-1 RNA-dependent RNA polymerase (RdRp) gene, complete cds
Range 1: 2521 to 2751 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 44/77(57%) | 0/77(0%) | Plus/Plus |
Query 47 LHIMNGIGFDAKMIKQMIAGKSEFFRVTITEEGTFASVTRGLASFCAGDWETSGRTTIREKVQSTLDQVSKLVRRGL 277 L IM+ + F A KQM +SEFFR TI+ FAS TR LASF AGDWE +GR+T+RE+V S LDQ+ KL RRG+ Subject 2521 LEIMDNMLFKANKWKQMFGLRSEFFRNTISGARVFASPTRALASFIAGDWEGAGRSTVRERVGSLLDQIGKLRRRGV 2751
Range 2: 2538 to 2762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 37/75(49%) | 0/75(0%) | Minus/Minus |
Query 64 ISWSNPLLTSLDT*SSVDCTFSLIVVLPDVSQSPAQKLASPLVTLANVPSSVIVTLKNSLLPAIICLIIFASKPI 288 I+ + P L + *SS T SL V LP SQSPA KLA+ LV LAN + IV LKNS L IC + A K I Subject 2538 IASATPRLRNFPI*SSRLPTLSLTVDLPAPSQSPAMKLANALVGLANTLAPEIVFLKNSDLNPNICFHLLALKSI 2762
Helicobasidium mompa totivirus 1-17 segment L, complete sequence
Range 1: 4261 to 4419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 19/53(36%) | 0/53(0%) | Plus/Plus |
Query 113 EFFRVTITEEGTFASVTRGLASFCAGDWETSGRTTIREKVQSTLDQVSKLVRR 271 EF R+ +T G V R +ASF +G+W T T RE + + + Q L R Subject 4261 EFLRMAVTPVGAIGYVCRSIASFISGNWSTDAPLTPREYLTNCISQCHTLFNR 4419