Nucleotide Sequence (462 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
100.0 | 100.0 | 32% | 1.928e-19 | 34% | JN997472.1 | |
100.0 | 100.0 | 32% | 1.928e-19 | 34% | JN997474.2 | |
112.0 | 112.0 | 31% | 4.999e-23 | 37% | KX882983.1 | |
112.0 | 112.0 | 31% | 4.999e-23 | 37% | NC_033465.1 | |
102.3 | 173.7 | 20% | 3.94e-20 | 36% | JN997473.1 |
Alignments
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997472.1 Length: 4655 Number of Matches: 1
Range 1: 4126 to 4563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 50/146(34%) | 0/146(0%) | Minus/Plus |
Query 5 VLDCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSK 442 V D Y IK +HR VGGISE+K S + LI S + I LPGV +Y+ + +L++ ++ R+ ATY+AV K+R + + R + + +R ++K HK NYGKA + GF ++VL + +LN S+ Subject 4126 VEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVLGREMPDATITTILNTSQ 4563
Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997474.2 Length: 3666 Number of Matches: 1
Range 1: 3163 to 3600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 50/146(34%) | 0/146(0%) | Minus/Plus |
Query 5 VLDCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSK 442 V D Y IK +HR VGGISE+K S + LI S + I LPGV +Y+ + +L++ ++ R+ ATY+AV K+R + + R + + +R ++K HK NYGKA + GF ++VL + +LN S+ Subject 3163 VEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVLGREMPDATITTILNTSQ 3600
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Sequence ID: KX882983.1 Length: 4571 Number of Matches: 1
Range 1: 4077 to 4511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 53/145(37%) | 0/145(0%) | Minus/Plus |
Query 2 DCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSKN 436 D Y I+T+HR VGGI+ED + V IR+S T LPGV Y+R++K L+LE P+ +RI AT +AV + + V + N++RY + RAL++ + + T+ +GKA +TGF+ DVL + + L++ ++N Subject 4077 DLYDIRTAHRVVGGIAEDVSARVDKFIRTSSESIETTLPDTLPGVDAYARLLKKVLELEVPVSVVSTRIRNATLNAVQLTRKTVTVEKTLNVQRYMVYRALYRAYADVTNNPMFGKAMLTGFIFDVLTQNAQLSAVAQLVSSAQN 4511
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Sequence ID: NC_033465.1 Length: 4571 Number of Matches: 1
Range 1: 4077 to 4511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 53/145(37%) | 0/145(0%) | Minus/Plus |
Query 2 DCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSKN 436 D Y I+T+HR VGGI+ED + V IR+S T LPGV Y+R++K L+LE P+ +RI AT +AV + + V + N++RY + RAL++ + + T+ +GKA +TGF+ DVL + + L++ ++N Subject 4077 DLYDIRTAHRVVGGIAEDVSARVDKFIRTSSESIETTLPDTLPGVDAYARLLKKVLELEVPVSVVSTRIRNATLNAVQLTRKTVTVEKTLNVQRYMVYRALYRAYADVTNNPMFGKAMLTGFIFDVLTQNAQLSAVAQLVSSAQN 4511
Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997473.1 Length: 4619 Number of Matches: 3
Range 1: 4115 to 4537 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 51/141(36%) | 0/141(0%) | Minus/Plus |
Query 29 HMTVLDCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPL 451 +M V D YRIKT+HR GG+SE SDV + + +I L GV DY+R V L++ + L R+ +ATY+AV+PK R + V N K ++A++K K + YGKA + G +DV+ ++K L Subject 4115 NMPVEDFYRIKTTHRVAGGVSEAIDSDVSMSVIRGIDKSFNIKIPKLQGVHDYARAVAMELEMMKRLDYITDRMYKATYEAVVPKTRGMTVVPNKEEKWCYNVKAIYKAFKGKIQTAGYGKAALVGMALDVIQTSDKDTTL 4537
Range 2: 4123 to 4296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 23/58(40%) | 0/58(0%) | Plus/Minus |
Query 270 SDAFTILE*STTPGSTPICVAPFLNPDDLINHLTSDRLSSLMPPTHLWEVFIL*QSST 443 S T *S TP + I + L+ + + LTS+ ++S PP LW V IL*+SST Subject 4123 SSIATARA*SCTPCNLGILMLKLLSMPLITDILTSESIASDTPPATLWVVLIL*KSST 4296
Range 3: 4324 to 4506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 23/61(38%) | 0/61(0%) | Plus/Minus |
Query 60 TSIRKPVILAFP*LTISVSSLCTLNNARKISYRLILPFLETFMFLSFGITASYVARIILEM 242 TS P AFP* + + L L A + + F T M L G TASYVA IL + Subject 4324 TSRAIPTNAAFP*PAVCIFPLNALYIALTL*HHFSSLFGTTVMPLVLGTTASYVALYILSV 4506