Queries
Nucleotide Sequence (529 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
198.6 | 325.6 | 37% | 5.214e-49 | 47% | JN997473.1 | |
148.2 | 235.1 | 33% | 7.762e-34 | 35% | JN997472.1 | |
148.2 | 235.1 | 33% | 7.762e-34 | 35% | JN997474.2 | |
148.2 | 235.1 | 33% | 7.762e-34 | 35% | NC_020903.1 | |
325.9 | 1095.0 | 24% | 2.371e-87 | 42% | LC075489.1 |
Alignments
Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997473.1 Length: 4619 Number of Matches: 2
Range 1: 4049 to 4546 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.6 bits(427) | 0.0 | 84/166(51%) | 0/166(0%) | Minus/Plus |
Query 12 GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVLQWRDMSSPFHLS 509 GM+L +T LR YY RQ+V+C P+E FY IK THRVAGG+SEA D+DV + G +++PKL GVH+YA VA L+MMK ++ + DR+ AT AV PK+R M ++PN + ++KAIYKAFKGK+ AGYGKAALVG ALDV+Q D + ++ Subject 4049 GMTLDTVTKLRHVYYNRQSVICNMPVEDFYRIKTTHRVAGGVSEAIDSDVSMSVIRGIDKSFNIKIPKLQGVHDYARAVAMELEMMKRLDYITDRMYKATYEAVVPKTRGMTVVPNKEEKWCYNVKAIYKAFKGKIQTAGYGKAALVGMALDVIQTSDKDTTLKMA 4546
Range 2: 4033 to 4512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 75/160(47%) | 0/160(0%) | Plus/Minus |
Query 46 CNTSSANPTSAAFPYPATSTFPLKALYIALRCLDAWMLGFGMIFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLSLRLVIICRLIPQHNQT 525 C TS A PT+AAFP PA FPL ALYIAL + FG + L G TA VA+ LS S+ FI+S+ AT+ A SCTP +LG L + P + TS S AS+ PPATL V LI *K+S G+LQ T CL *Y L V + +IP Q+ Subject 4033 CITSRAIPTNAAFP*PAVCIFPLNALYIALTL*HHFSSLFGTTVMPLVLGTTASYVALYILSVI*SSLFIISSSIATARA*SCTPCNLGILMLKLLSMPLITDILTSESIASDTPPATLWVVLIL*KSSTGILQITDCLL*YTCLSFVTVSSVIPLLRQS 4512
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997472.1 Length: 4655 Number of Matches: 3
Range 1: 4051 to 4512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 71/154(46%) | 0/154(0%) | Minus/Plus |
Query 48 GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL 509 GM+ II+ LR +YY RQ+V+C T +E Y+IKN HRV GGISE D+ + LI + V +P L GV+EYA E+ K L + ++ + DR+ AT AV+ K RKM I+ Q +++ IYKA KG YGKAALVGFAL+VL Subject 4051 GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL 4512
Range 2: 4083 to 4388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 36/102(35%) | 0/102(0%) | Plus/Minus |
Query 172 IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS 477 IFI TA VA LS + N S AYS TP G T +I S +S +PP TLC F I +S V +T CL *Y S Subject 4083 IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS 4388
Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997474.2 Length: 3666 Number of Matches: 3
Range 1: 3088 to 3549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 71/154(46%) | 0/154(0%) | Minus/Plus |
Query 48 GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL 509 GM+ II+ LR +YY RQ+V+C T +E Y+IKN HRV GGISE D+ + LI + V +P L GV+EYA E+ K L + ++ + DR+ AT AV+ K RKM I+ Q +++ IYKA KG YGKAALVGFAL+VL Subject 3088 GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL 3549
Range 2: 3120 to 3425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 36/102(35%) | 0/102(0%) | Plus/Minus |
Query 172 IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS 477 IFI TA VA LS + N S AYS TP G T +I S +S +PP TLC F I +S V +T CL *Y S Subject 3120 IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS 3425
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: NC_020903.1 Length: 4655 Number of Matches: 3
Range 1: 4051 to 4512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 71/154(46%) | 0/154(0%) | Minus/Plus |
Query 48 GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL 509 GM+ II+ LR +YY RQ+V+C T +E Y+IKN HRV GGISE D+ + LI + V +P L GV+EYA E+ K L + ++ + DR+ AT AV+ K RKM I+ Q +++ IYKA KG YGKAALVGFAL+VL Subject 4051 GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL 4512
Range 2: 4083 to 4388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 36/102(35%) | 0/102(0%) | Plus/Minus |
Query 172 IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS 477 IFI TA VA LS + N S AYS TP G T +I S +S +PP TLC F I +S V +T CL *Y S Subject 4083 IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS 4388
Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052
Sequence ID: LC075489.1 Length: 4455 Number of Matches: 8
Range 1: 4013 to 4453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.9 bits(705) | 0.0 | 139/147(95%) | 0/147(0%) | Minus/Plus |
Query 78 LCWGMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKA 518 L GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAG+LEVEVPKL GVHEYA+EVAKTLDMMKDVELLV RVRMATLSAVTPKSRKM+IIPNPN+QASKHLKAIYKAFKGKVDVAGYGKA Subject 4013 LARGMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGKLEVEVPKLIGVHEYAVEVAKTLDMMKDVELLVSRVRMATLSAVTPKSRKMHIIPNPNVQASKHLKAIYKAFKGKVDVAGYGKA 4453
Range 2: 4006 to 4455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
255.8 bits(552) | 0.0 | 122/150(81%) | 0/150(0%) | Plus/Minus |
Query 76 AAFPYPATSTFPLKALYIALRCLDAWMLGFGMIFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLSLRLVIICRLIPQHNQT 525 AAFPYPATST PLKALY+A +CLDA LGFGM+ IFLD GVTAD VAILTL TS+STSFI+S+VFATS AYSCTP S GTSTSS PAGPGLISCSTSAS*AS+MPPATLCVFLIT* AS+GVLQTTACLA*Y SLR VIIC+LIP Q+ Subject 4006 AAFPYPATSTLPLKALYMAFKCLDA*TLGFGMMCIFLDLGVTADRVAILTLLTSNSTSFIISSVFATSTAYSCTPISFGTSTSSFPAGPGLISCSTSAS*ASDMPPATLCVFLIT*NASIGVLQTTACLA*YRSLRFVIICKLIPLAKQS 4455
Range 3: 4013 to 4450 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.4 bits(383) | 0.0 | 78/146(53%) | 0/146(0%) | Plus/Minus |
Query 81 LSISCYIYLPFESFVYCFEMFRRLDVRIRYDIHFP*FWSNC**RCHSHPIYE*FHIFHHV*CFRDLDRILVHSCQLRHLYF*PPCGSWFD*LFYISVVSFRNAPGHPVCVFNHVKSLNGRFTNHRLSRIISKPQVSYYL*THSPTQ 518 LSI Y++ F+SFVY F + RRL++RI YD+H P*F C * HS+P + F++FHH+ CF +RI ++ L + YF P G W D*LF+ISVVSFR APGHPVCVFNHVK L+ TNH L RII + +V YYL H Q Subject 4013 LSIPSYVHFAFKSFVYGF*VLRRLNIRIWYDVHLP*FRRYCR*SRHSNPTDQQFNVFHHIQCFCHFNRIFMYPY*LWYFYFQLPRGPWLD*LFHISVVSFRYAPGHPVCVFNHVKRLDRCLTNHCLPRIIPQSEVCYYLQAHPSRQ 4450
Range 4: 4035 to 4454 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 72/140(51%) | 0/140(0%) | Minus/Plus |
Query 77 K**LT*GLDIMRDRRWFVKRPLRLFT*LKTHTGWPGAFRKLTTLM*NN*SNQDPQGG*K*RCLSWQECTSMRSRSRKH*T**KMWNYS*IG*EWQRYQQLLQNQGK*ISYRILTSKRLNISKQYTKLSKGR*M*QDMERQ 496 K** T IMR ++WFV+ R FT*LKTHTGWPGA+ KLTTLM NN*S+Q P+G K*+ S +MR + +KH **K N +G EW+ Y+Q NQG+ SY+IL +RL+ K YTKL K + * MER+ Subject 4035 K**QTSDCGIMRGKQWFVRHLSRRFT*LKTHTGWPGAYLKLTTLMWNN*SSQGPRGSWK*KYQS**GYMNMRLKWQKHWI**KTLNCWSVGLEWRLYRQ*RLNQGRCTSYQILMFRRLST*KPYTKLLKAKWT*LGMERR 4454
Range 5: 4243 to 4452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 30/70(43%) | 0/70(0%) | Minus/Plus |
Query 79 VCDRGRENIRHDERCGTTRR*GENGNAISSYSKIKENEYHTES*HPSV*TSQSNIQSFQREGRCSRIWKG 288 +C +N +DER +*G NG++I S + IKE+ +HT+S* V* +S+IQSF R+ S +WKG Subject 4243 ICG*SGKNTGYDERR*IAGQ*G*NGDSIGSNA*IKEDAHHTKS*CSGV*ALKSHIQSF*RQSGRSWVWKG 4452
Range 6: 4024 to 4131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 20/36(56%) | 0/36(0%) | Minus/Plus |
Query 400 NESTNNN*PEA*ILCETGGGL*NAH*GFLRD*KHTQ 507 +E NNN P+ +LCE GL*+ + G LRD*KHTQ Subject 4024 DELANNNKPQTAVLCEASSGL*DTYRGVLRD*KHTQ 4131
Nucleotide Sequence (348 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
251.7 | 831.9 | 20% | 2.653e-65 | 53% | LC075489.1 | |
170.1 | 371.0 | 22% | 9.464e-41 | 36% | JN997472.1 | |
170.1 | 385.2 | 22% | 9.464e-41 | 37% | JN997474.2 | |
193.1 | 449.3 | 32% | 1.201e-47 | 37% | JN997473.1 | |
208.6 | 609.1 | 17% | 2.493e-52 | 45% | GU108587.1 |
Alignments
Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052
Sequence ID: LC075489.1 Length: 4455 Number of Matches: 8
Range 1: 3269 to 3610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 104/114(91%) | 0/114(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQINHQTHPT 342 GKLRAIYG DTTSYIL+NFAMYNCENVLPNRFPVGKAANDRNVVSRVR VLKDRLPYCLDFEDFNSQHSPEAM+AVVLAYGDVFNKTLTEDQMRALQWTAD ISNQI H T Subject 3269 GKLRAIYGTDTTSYILANFAMYNCENVLPNRFPVGKAANDRNVVSRVRGVLKDRLPYCLDFEDFNSQHSPEAMRAVVLAYGDVFNKTLTEDQMRALQWTADSISNQIIHDNTGT 3610
Range 2: 3287 to 3598 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 61/104(59%) | 0/104(0%) | Minus/Minus |
Query 19 LVVYLVRYWVCCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSV 330 +V LV Y V CPL+ PHLIF E FV++I+V QH H F +L +EV +VQ VWQPVL + *HHVS+V C +HRKP+ *HIF +VHGKIRQY+AC +CSV Subject 3287 VVYDLV*Y*VSCPLEGPHLIFRECFVKHIAVGQHYCPHCFRAVLAVEVFEVQTVWQPVL*HSPDS*HHVSIVGCLSHRKPIW*HIFAIVHGKIRQYIACGVCSV 3598
Range 3: 3285 to 3563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 51/93(55%) | 0/93(0%) | Plus/Plus |
Query 17 YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVSIVPKP*KPLCWLTEMYSTKRSLKIK*GRFNG 295 +TEQ QA Y ILPCT KMCY GFRW +Q T ETWCQ *RTGCHT WT +TS S K CW T M TK S KIK G +G Subject 3285 FTEQTPQAIYWRILPCTIAKMCYQIGFRWERQPTIETWCQESGEC*RTGCHTVWTSKTSTASTALKQCGQ*CWPTAMCLTKHSRKIKCGPSSG 3563
Range 4: 3274 to 3423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 39/50(78%) | 0/50(0%) | Minus/Minus |
Query 6 FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIALS 155 F T TLDTTFLS AA PTGNL GNTFSQLYMAK S+*LVVS P IALS Subject 3274 FSTPLTLDTTFLSLAAFPTGNLFGNTFSQLYMAKFASI*LVVSVP*IALS 3423
Range 5: 3423 to 3551 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 23/43(53%) | 0/43(0%) | Minus/Minus |
Query 155 PSFDLQ*AFC*IHLRKPTQRLSWLRDYADY*SPQSPSSMAACP 283 P+FDL * FC* H R+PT + L+ A *S +SP+SMA CP Subject 3423 PAFDLP*VFC*THRRRPTLLPALLQGCAGC*SLRSPNSMATCP 3551
Range 6: 3286 to 3567 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 52/94(55%) | 0/94(0%) | Plus/Plus |
Query 18 IRSRYDKLHTV*FCHVQL*KCVTQQVSGG*SSKRQKRGVKGTSGSEGQAAIXXXXXXXQ*SA*SRSHESRCVGLRRCIQQNAH*RSNEGASMDS 299 +R+R+ KL+T FCHVQL KCVT+ VSGG S+R KRGVK ++GQ AIL GL LQ A S+ VGLRRC+ QN H RSN G +DS Subject 3286 LRNRHHKLYTGEFCHVQLRKCVTK*VSGGKGSQR*KRGVKSQGSAKGQVAILFGLRRLQQPAQP*SNAGSSVGLRRCV*QNTHGRSNAGPPVDS 3567
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997472.1 Length: 4655 Number of Matches: 5
Range 1: 3298 to 3618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 69/107(64%) | 0/107(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQI 321 GK RAIYG D TSY+LSNFA YNCENVLPN+FPVG+ AND NVV+RV VL +R+P+CLDFEDFNSQHS MKAV+ AY + F LT +Q +A WTA + QI Subject 3298 GKQRAIYGTDLTSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQI 3618
Range 2: 3306 to 3452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 33/49(67%) | 0/49(0%) | Minus/Minus |
Query 9 FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIAL 155 F T TL TTF S A+ PTGN G+TFSQL AKLDS *LV S PYIAL Subject 3306 FSTPETLFTTFSSLASRPTGN*FGSTFSQL*NAKLDST*LVRSVPYIAL 3452
Range 3: 3455 to 3496 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.1 bits(42) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Minus |
Query 158 DY*SPQSPSSMAAC 199 DY*SPQS A C Subject 3455 DY*SPQSQDRKAFC 3496
Range 4: 3313 to 3597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 34/95(36%) | 0/95(0%) | Minus/Minus |
Query 16 CCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY 300 C P R L S+ E + +S + H +LTIEVLKV+ V+ + HHV V+ + K + *++ T+V +IRQYVA +IC +Y Subject 3313 CGPHCRLLLFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKTERHSVI*HSRNSVHHVFVIGISSDWKLIW*YVLTIVKREIRQYVASQICPIY 3597
Range 5: 3314 to 3499 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 26/62(42%) | 0/62(0%) | Plus/Plus |
Query 17 YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVS 202 Y QI ATYCLI T V+ Y F+ + T+TW + * T C + TLRTSIV+ Subject 3314 YMGQI*LATYCLISRFTIVRTYYQINFQSDEMPMTKTW*TEFREC*ITECLSVLTLRTSIVN 3499
Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997474.2 Length: 3666 Number of Matches: 5
Range 1: 2335 to 2655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 69/107(64%) | 0/107(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQI 321 GK RAIYG D TSY+LSNFA YNCENVLPN+FPVG+ AND NVV+RV VL +R+P+CLDFEDFNSQHS MKAV+ AY + F LT +Q +A WTA + QI Subject 2335 GKQRAIYGTDLTSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQI 2655
Range 2: 2343 to 2489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 33/49(67%) | 0/49(0%) | Minus/Minus |
Query 9 FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIAL 155 F T TL TTF S A+ PTGN G+TFSQL AKLDS *LV S PYIAL Subject 2343 FSTPETLFTTFSSLASRPTGN*FGSTFSQL*NAKLDST*LVRSVPYIAL 2489
Range 3: 2492 to 2533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 10/14(71%) | 0/14(0%) | Minus/Minus |
Query 158 DY*SPQSPSSMAAC 199 DY*SPQS MA C Subject 2492 DY*SPQSQDRMAFC 2533
Range 4: 2350 to 2634 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 35/95(37%) | 0/95(0%) | Minus/Minus |
Query 16 CCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY 300 C P R L S+ E + +S + H +LTIEVLKV+ W V+ + HHV V+ + K + *++ T+V +IRQYVA +IC +Y Subject 2350 CGPHCRLLLFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKTEWHSVI*HSRNSVHHVFVIGISSDWKLIW*YVLTIVKREIRQYVASQICPIY 2634
Range 5: 2351 to 2536 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 27/62(44%) | 0/62(0%) | Plus/Plus |
Query 17 YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVS 202 Y QI ATYCLI T V+ Y F+ + T+TW + * T CH+ TLRTSIV+ Subject 2351 YMGQI*LATYCLISRFTIVRTYYQINFQSDEMPMTKTW*TEFREC*ITECHSVLTLRTSIVN 2536
Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997473.1 Length: 4619 Number of Matches: 5
Range 1: 3296 to 3610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 76/105(72%) | 0/105(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISN 315 GKLRAIYG D TSY+LSNFA YNCENVLP RFPVGK AND NVV+RV VLKDRLPYCLDFEDFNSQHS +MKAV+ AYGDV+ + TE Q+ AL WTA+ + + Subject 3296 GKLRAIYGTDLTSYVLSNFAFYNCENVLPKRFPVGKDANDANVVNRVAGVLKDRLPYCLDFEDFNSQHSVSSMKAVIYAYGDVYRQVFTEQQLEALAWTAESLDD 3610
Range 2: 3314 to 3592 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 40/93(43%) | 0/93(0%) | Minus/Minus |
Query 19 CPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSV 297 CP + L+ E YI+VS H MLT+E+ K+ VWQPV Q+ P +HVSVV FT+R+P IF V+ K+RQY+ +I SV Subject 3314 CPCQSFQLLLCEHLPVYITVSIDYCLH*RHAMLTVEIFKI*TVWQPVFQHSCNPVYHVSVVGVFTNREPFWQDIFAVIKRKVRQYITSQIRSV 3592
Range 3: 3315 to 3560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 34/82(41%) | 0/82(0%) | Plus/Plus |
Query 20 TEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVSIVPKP*KPLCWLTEMYSTKRS 265 TE+I YC L T KM G R VK TT TW G + *+TGCHT L+ S V+I + *+ LT MY+ + S Subject 3315 TERI*LVMYCRTLRFITAKMSCQNGSRLVKTPTTLTW*TGLQEC*KTGCHTV*ILKISTVNIACRQ*RQ*SMLTVMYTGRCS 3560
Range 4: 3301 to 3450 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 31/50(62%) | 0/50(0%) | Minus/Minus |
Query 6 FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIALS 155 F T TL TT S A+LPTGN G TFSQL AK DS *LV S P IA S Subject 3301 FNTPATLFTTLASLASLPTGNRFGKTFSQL*NAKFDST*LVRSVP*IARS 3450
Range 5: 3313 to 3594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 35/94(37%) | 0/94(0%) | Plus/Plus |
Query 18 IRSRYDKLHTV*FCHVQL*KCVTQQVSGG*SSKRQKRGVKGTSGSEGQAAIXXXXXXXQ*SA*SRSHESRCVGLRRCIQQNAH*RSNEGASMDS 299 +R+ D L TV C + L KC+ + V G * +R+ RG +G E Q AIL * Q S * +E + LR CIQ H + + MDS Subject 3313 LRNGSD*LCTVELCVL*LRKCLAKTVPGW*RRQRR*RGKQGCRSVERQVAILSRF*RFQQST*RVVNEGSNLCLR*CIQAGVHRAATGSSGMDS 3594
Grapevine associated mycovirus 1 isolate Ctg150 putative RNA dependent RNA polymerase gene, partial cds
Sequence ID: GU108587.1 Length: 1225 Number of Matches: 7
Range 1: 946 to 1224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.6 bits(449) | 0.0 | 84/93(90%) | 0/93(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQM 279 GKLRAIYG DTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAM+ VVLAYGDVF ++LT++Q+ Subject 946 GKLRAIYGTDTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMREVVLAYGDVFRQSLTDEQL 1224
Range 2: 948 to 1100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 42/51(82%) | 0/51(0%) | Minus/Minus |
Query 3 FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIALSF 155 F TA TL+TTFLS AA PTGNL GNTFSQLYMAK DS+*LVVS PYIALSF Subject 948 FNTALTLETTFLSLAAFPTGNLFGNTFSQLYMAKFDSI*LVVSVPYIALSF 1100
Range 3: 1158 to 1196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 9/13(69%) | 0/13(0%) | Minus/Minus |
Query 213 NTSP*ANTTAFMA 251 NTSP ANTT+ +A Subject 1158 NTSPYANTTSLIA 1196
Range 4: 946 to 1221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 43/92(47%) | 0/92(0%) | Minus/Minus |
Query 1 LIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVYSPELS 276 L+ S+R E+++V H H F T+LT++VLKVQ +W VLQ+ S ++VS+V F+ R+ V *+IF VVHGKI QY+ + SVY +LS Subject 946 LLISQRLSEHVTVC*HYFPHCFRTVLTVKVLKVQTIW*SVLQHCSDSRNNVSIVGGFSDRESVR*YIFAVVHGKI*QYITRCVRSVYCSQLS 1221
Range 5: 947 to 1207 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 39/87(45%) | 0/87(0%) | Plus/Plus |
Query 2 ESSGLYTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVSIVPKP*KPLCWLTEMYSTKR 262 ES YTE+ ++ YC ILPCTT KM Y T K T ET + E+ *RT H WTLRT V+ V K * C T S R Subject 947 ES*EQYTERTQRVIYCQILPCTTAKMYYRTDSLSEKPPTIETLFRESEQC*RTDYHIVWTLRTLTVNTVLKQ*GK*C*HTVTCSDSR 1207
Range 6: 989 to 1165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 31/59(53%) | 0/59(0%) | Minus/Minus |
Query 44 SWLRDYADY*SPQSPSSMAACPSEPLVPLTPRFCRLLLYPPETCWVTHFHSCTWQN*TV 220 S L+D D *SPQSP++M CPS L RF R L+ C V HF SCTWQN TV Subject 989 SLLQDCVDC*SPQSPNNMVVCPSTLL*LSKQRFYRWRLFRQGICSVIHFRSCTWQNLTV 1165
Range 7: 948 to 1115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 26/56(46%) | 0/56(0%) | Plus/Plus |
Query 3 KAQGYIRSRYDKLHTV*FCHVQL*KCVTQQVSGG*SSKRQKRGVKGTSGSEGQAAI 170 KA+ IR+ +++L+TV FCHVQL KC+T+Q+ S +R KR + S EGQ I Subject 948 KAESNIRNGHNELYTVKFCHVQLRKCITEQIPCRKSRQR*KRCFESQSSVEGQTTI 1115
Nucleotide Sequence (412 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
232.0 | 531.4 | 28% | 3.038e-59 | 32% | LC075489.1 | |
112.0 | 112.0 | 30% | 4.131e-23 | 41% | JN997472.1 | |
112.0 | 112.0 | 30% | 4.131e-23 | 41% | JN997474.2 | |
181.6 | 359.7 | 29% | 4.523e-44 | 41% | GU108587.1 | |
118.4 | 168.9 | 18% | 4.842e-25 | 40% | JN997473.1 |
Alignments
Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052
Sequence ID: LC075489.1 Length: 4455 Number of Matches: 5
Range 1: 2300 to 2683 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.0 bits(500) | 0.0 | 97/128(76%) | 0/128(0%) | Plus/Plus |
Query 27 G*RSDSEVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR 410 G SD EVV S+FGVAM G+MLQGV KSYFYA+IDQYIITRSKAMLA+FTRHFSGLY SV WDTPL+T ALYRDRLP+ + ++SMT +IE+ GYPKITSGH IHYTYSEV KSTPRDK +RV +LAR Subject 2300 GPSSDKEVVVSIFGVAMTGIMLQGVTKSYFYARIDQYIITRSKAMLALFTRHFSGLYGSVFWDTPLSTDALYRDRLPDEKPAKSMTPMEIESLGYPKITSGHHIHYTYSEVLKSTPRDKLNRVAELAR 2683
Range 2: 2290 to 2631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 75/114(66%) | 0/114(0%) | Minus/Minus |
Query 17 TSE*V*CI*CPDVIFG*PPASI*DSVIDSDNWFSGSLSLYNAFVFNGVSQSTDSYKPEKCLVNIANMALERVIIYWSIFA*K*LFSTPCNMTPNIATPNTDATTSLSLLYPKHT 358 TSE V* I* PDVI G P SI VID + SGSLSLY+A V GVSQ TD Y PEKCLVN AN+AL+ VI+Y SI A*K*LF TPCNM P IATPN D TTSLS P T Subject 2290 TSEYV*WI*WPDVILGYPRDSISIGVIDLAGFSSGSLSLYSASVLRGVSQKTDPYNPEKCLVNRANIALDLVIMY*SILA*K*LFVTPCNMIPVIATPNIDTTTSLSEEGPSDT 2631
Range 3: 2359 to 2661 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 41/101(41%) | 0/101(0%) | Plus/Plus |
Query 86 HVARS*EKLLLRKNRPIYNNALQSHVSDIHKALLWFI*VSTLGHTVKHEGVIQRQAARKPIIRINDGISNRGRGLPEDHIRASNTLHLFRSAEKYSKG*TQ 388 HV RS ++L LR+NR ++ N + S+VS IH ALL I V LGH +H IQ A + IND NR G+ ++I S L++FR +K++K T+ Subject 2359 HVTRSDKELFLRENRSVHYN*V*SYVSSIH*ALLRIIWVCLLGHAPQH*CTIQG*AT*RKTG*INDADGNRIPGVS*NNIWPSYPLYVFRGTQKHAKRQTE 2661
Range 4: 2312 to 2485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 26/58(45%) | 0/58(0%) | Minus/Minus |
Query 39 PKY*LI*TREVPCEYR*HGFGARYYILVYFCVEVTFLNSLQHDP*HRHSEHRRHYFTV 212 PK I*+ EVP E *H F Y +L+Y VE+ +SL HDP H H E+R +Y + Subject 2312 PKDRPI*S*EVPSE*S*HSFRPSYNVLIYSRVEIALCHSL*HDPCHSHPEYRYNYLLI 2485
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997472.1 Length: 4655 Number of Matches: 1
Range 1: 2347 to 2712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 50/122(41%) | 0/122(0%) | Plus/Plus |
Query 45 EVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR 410 E SV+GV M G+++ + +F+A I QY++T+SKAML TRHFS LYES +D P + L+RDR P +E+MT Q+E KI+ H H+T +V KS R + R +R Subject 2347 EASKSVYGVTMSGLVIANGKAKFFFASIKQYLLTQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKISGAHHFHFTPMQVLKSIGRGRLERAIQASR 2712
Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997474.2 Length: 3666 Number of Matches: 1
Range 1: 1384 to 1749 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 50/122(41%) | 0/122(0%) | Plus/Plus |
Query 45 EVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR 410 E SV+GV M G+++ + +F+A I QY++T+SKAML TRHFS LYES +D P + L+RDR P +E+MT Q+E KI+ H H+T +V KS R + R +R Subject 1384 EASKSVYGVTMSGLVIANGKAKFFFASIKQYLLTQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKISGAHHFHFTPMQVLKSIGRGRLERAIQASR 1749
Grapevine associated mycovirus 1 isolate Ctg150 putative RNA dependent RNA polymerase gene, partial cds
Sequence ID: GU108587.1 Length: 1225 Number of Matches: 3
Range 1: 22 to 360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.6 bits(390) | 0.0 | 73/113(65%) | 0/113(0%) | Plus/Plus |
Query 72 AMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR 410 +M GV+LQGVE+SYFYAK++QY++TR+KAMLAI TRHFSGLYESV WD+PL T AL+RDRLP+ SE+M IE GYPKITSGH IHYTY+EV KS R+ L+R Subject 22 SMTGVLLQGVEQSYFYAKVNQYVLTRNKAMLAILTRHFSGLYESVYWDSPLETGALFRDRLPDRDQSEAMAAPSIERLGYPKITSGHHIHYTYTEVMKSVEPHLRKRIETLSR 360
Range 2: 24 to 314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 61/97(63%) | 0/97(0%) | Minus/Minus |
Query 74 FCTSE*V*CI*CPDVIFG*PPASI*DSVIDSDNWFSGSLSLYNAFVFNGVSQSTDSYKPEKCLVNIANMALERVIIYWSIFA*K*LFSTPCNMTPNI 364 F TS V*C+* PDVIFG*P SI + I SD SG+LSL A V NG SQ TDSY PEKC V+IA++AL V YW FA*K*L STPCN TP I Subject 24 FITSVYV*CM*WPDVIFG*PNLSIDGAAIASDWSRSGNLSLNKAPVSNGESQYTDSYSPEKCRVSIASIALFLVKTYWFTFA*K*LCSTPCNSTPVI 314
Range 3: 57 to 314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 35/86(41%) | 0/86(0%) | Plus/Plus |
Query 107 KLLLRKNRPIYNNALQSHVSDIHKALLWFI*VSTLGHTVKHEGVIQRQAARKPIIRINDGISNRGRGLPEDHIRASNTLHLFRSAE 364 +LLLRK+ PI N Q + + AL I*V LG TV++ IQRQ AR I N R GL ++++ S+TL+++RS E Subject 57 ELLLRKSEPICLNQKQGYAGNTDSALFRAI*VCILGLTVRNRCFIQRQVARSGPIGSNGCTIYRKIGLSKNYVGPSHTLYVYRSNE 314
Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997473.1 Length: 4619 Number of Matches: 2
Range 1: 2339 to 2662 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 49/108(45%) | 0/108(0%) | Plus/Plus |
Query 36 SDSEVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEV 359 S++E ++ GV M G+ L G +Y YAK+DQY++TR KA++AI TRHF+GLY SV + PLN +A++RDR P+++L +I KIT+ H IH+T EV Subject 2339 SENESNVNIMGVLMSGLRLAGDNCTYLYAKVDQYLVTRKKAVIAIMTRHFNGLYGSVFLNDPLNMEAMFRDRAPDDELMPKQNYEKICKKENTKITAQHHIHFTSEEV 2662
Range 2: 2338 to 2562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 30/75(40%) | 0/75(0%) | Minus/Minus |
Query 35 SGSLSLYNAFVFNGVSQSTDSYKPEKCLVNIANMALERVIIYWSIFA*K*LFSTPCNMTPNIATPNTDATTSLSL 259 SG+LSL A +F G ++TD Y+P K V IA A V YWS A + + +P P+I TP S SL Subject 2338 SGALSLNIASMFKGSFKNTDPYRPLKWRVIIAITAFFLVTRYWSTLAYRYVQLSPAKRKPDINTPIMFTFDSFSL 2562