Queries
Nucleotide Sequence (625 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
455.2 | 1654.6 | 30% | 2.612e-127 | 52% | NC_001948 | |
125.2 | 387.5 | 22% | 3.548e-54 | 34% | NC_009892 | |
115.2 | 379.2 | 30% | 1.56e-52 | 34% | NC_003462 | |
136.7 | 340.6 | 31% | 4.422e-53 | 49% | NC_008020 | |
128.9 | 488.7 | 13% | 2.872e-52 | 29% | NC_010538 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6302 to 6922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
455.2 bits(987) | 0.0 | 186/207(90%) | 0/207(0%) | Plus/Plus |
Query 3 GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVIV*ALSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNINVPREAHFIK 623 GIFKKPQLIWERICIARE+GNLENCIDNYAIEVSYAYRLGEL+I +MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE I *ALS+WH +SIMNNLVKALSAFEFVGVF VLKFPVV+HSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGRYIKPYSPGCAV GK+NILDEYLSV D GFDVLFSDPYQNI++P+EAHFIK Subject 6302 GIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIK 6922
Range 2: 6301 to 6615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 80/105(76%) | 0/105(0%) | Minus/Minus |
Query 2 NSNADKALTKLFIILTPCQTLKA*TITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP 316 NSNAD ALTKLFIIL CQ LKA*+I SN+PEIEHLILCLF T+ TQL* ASTSSSVI + +SPS A*+TSIA*LS+QFS+LPISLAM I SQI+*GFLKIP Subject 6301 NSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIP 6615
Range 3: 6685 to 6918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 64/78(82%) | 0/78(0%) | Minus/Minus |
Query 386 MKCASLGTLMFW*GSENSTSKP*ISETDKYSSSMFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 619 MKCASLG LMFW GSENSTSKP S TDKYSSS+ FP TAHPGE*GLMYLPVR GLSGTPAVKA K SSSE+SSLI+ Subject 6685 MKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 6918
Range 4: 6302 to 6922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
274.2 bits(592) | 0.0 | 121/207(58%) | 0/207(0%) | Minus/Minus |
Query 3 LYEVCLPWNVDVLVRV*EQHIKTMNIRDRQVLIKYVYLPLHCTPWRVGLDVPSC*IWTVWHTCCESHERLVFRNELPY*ATFTATWNTMNNNWKFKHAEHTNKFKCRQSLD*VIHNTHTMPNT*GLNNNLKQTRN*APHFVLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRLFKDP 623 L E+CL N DVLV V EQHIKT I D QVLIKY+ P HCTPWR+ L+VPSC I VW+TCCES+E L+ N LPY* TFT T +TMN+ WKFKH E+T K KC Q +*+IHNT MPNT*GL N+ K N*A H +L+P+QE++ +IM +F L HH * S+SV I L II+N I Q+A+ PSNA PLP+ LRL +DP Subject 6302 LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD*LRLLEDP 6922
Range 5: 6300 to 6917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.3 bits(468) | 0.0 | 117/206(57%) | 0/206(0%) | Plus/Plus |
Query 1 RGSLKSLSLFGRGSALLGK*AIWKIALIIMQSRYLMPTDLENYL*A**LRRKLKRIITACVSWFGISTK*GAQFLVCLRLLFRP*VFGMV*VL*IT*SRLCLHLNLLVCSACLNFQLLFIVFQVAVKVA**GSSFLKTSLSWLSQQVCQTVQI*QEGTSSPTLQGVQCKGR*TYLMSTCLSLIFMVLMCCSQTLTRTSTFQGRHTS 618 +GS +SL+ G G ALLG+ A W+I L IM+ R M TD E+ ** R+K + II SW G S +* AQF L+LL RP*VFG++*VL*I * + C HL+L V S CLNFQ FIV V VKV **GS F + +S LSQQV QT I QEGT S LQGVQC+G+ YLMSTC S IF VLMCCS+T T+TS F RH S Subject 6300 KGSSRSLN*SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHIS 6917
Range 6: 6304 to 6642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 59/113(52%) | 0/113(0%) | Plus/Plus |
Query 5 DL*KASAYLGEDLHC*GNRQFGKLH**LCNRGILCLQTWRIIYRRDD*GGS*SAL*LRAFPGSE*AQNEVLNFWFV*GYCLGLKCLAWCEYYE*LSQGFVCI*ICWCVLRA*I 343 DL +AS LG D+HC*G+ Q G+L+* LC+RG+LC+ T R + DD G S L*L G E A +E+LNF +* Y LGLK LA EYYE* S V I*+C C A*I Subject 6304 DLQEASINLGADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*I 6642
Range 7: 6676 to 6921 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 51/82(62%) | 0/82(0%) | Plus/Plus |
Query 377 *K*PNKGAHF*RRVFRGFHSRCARQSKSNRKVHQALLSRVCSAREDKHT**VLVCL*YSWF*CAVLRPLPEHQRSKGGTLHK 622 *K* NKGA+F F FHSRC+RQ S+RKVH AL SRVCSARE +T**VLV + F*CAVL P+P+HQ S GT H+ Subject 6676 *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQ 6921
Range 8: 6303 to 6707 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 71/135(53%) | 0/135(0%) | Minus/Minus |
Query 4 QK*APLLGYFYRYLEHYEQQLEI*ARRTHQQIQMQTKP*LSYS*YSHHAKHLRPKQ*PQTNQKLSTSFCAYSEPGNARSYNALQLPPQSSRL*IILQVCRHKIPRLHNYQCNFPNCLFP*QCRSSPK*AEAF*RS 408 +K APLL YFY Y HYE LEI*A H Q QM T *L+YS*YS++AK+LRP Q* Q KLS S A S P +YN L P+SS + L V H+ P HN Q N P C P*QC S+P+ EA *RS Subject 6303 RKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRLIEAS*RS 6707
Range 9: 6765 to 6917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 33/51(65%) | 0/51(0%) | Minus/Minus |
Query 466 *SVPPLER*CSGKGLRTAHQNHEYQRQTSTHQVCLSSLALHTLESRA*CTF 618 *+VP E *C G G RTAHQN + +TSTHQV SLALHTLE++A*CTF Subject 6765 *NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTF 6917
Range 1: 6200 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 48/80(60%) | 0/80(0%) | Plus/Plus |
Query 3 GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVI 242 G+FKKP L+ ER+ IA E NL+NCIDNYAIEVSYAY +GE ++EEE++AHYNCVRF+V++ H ++CS+S LF I Subject 6200 GVFKKPDLVLERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 2: 6482 to 6832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 50/117(43%) | 0/117(0%) | Plus/Plus |
Query 270 VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNINVPREAHFI 620 V++M+ +V L + F ++ ++VH+VPGSGK++LIRE ++ + AF+ G PD PN+ GRYIK G G ILDEYLS GFD FSDP+QN AHF+ Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFV 6832
Range 3: 6199 to 6438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 39/80(49%) | 0/80(0%) | Minus/Minus |
Query 2 ITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP 241 I + E EH T TQL*CAS SSS+ +SP *A +TSIA*LSMQF +L +S A+ LS GFLK P Subject 6199 IDLKRSETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVSTAI*SLSSTKSGFLKTP 6438
Range 4: 6598 to 6801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 27/68(40%) | 0/68(0%) | Minus/Minus |
Query 386 FW*GSENSTSKP*ISETDKYSSSMFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 589 F *GSE S P + ++YSSSM P P M P FG SG+P KA+ +SLIR Subject 6598 F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR 6801
Range 5: 6200 to 6430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 26/77(34%) | 0/77(0%) | Minus/Minus |
Query 3 KQTRN*APHFVLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRLFKDP 233 K+ RN V + N E H V++ +F + +* V I L+CII+NAI ++ F SN PL +++ F++P Subject 6200 KEIRNRTF*KVGVLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNAILEVVCFNSNLKPLQHQIWFFENP 6430
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6351 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 46/78(59%) | 0/78(0%) | Plus/Plus |
Query 3 GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 236 G+FKKP L+ ER+ IARE NLENCIDNYAIEVS AY++GE +T +EV+AHYNCVRF+V++ H ++ +I LF+ Subject 6351 GVFKKPDLVLERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK 6584
Range 2: 6702 to 7052 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 53/117(45%) | 0/117(0%) | Plus/Plus |
Query 270 VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNINVPREAHFI 620 VSIM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS GF+ LFSDPYQN AHFI Subject 6702 VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI 7052
Range 3: 6350 to 6538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 36/63(57%) | 0/63(0%) | Minus/Minus |
Query 2 TRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP 190 T KRTQL* ASTS V + SP L A +TSIA*LS+QFSK +SLA+ LS+ GFL P Subject 6350 TMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSKFLVSLAICNLSRTRSGFLNTP 6538
Range 4: 6854 to 7021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 24/56(43%) | 0/56(0%) | Minus/Minus |
Query 422 FW*GSENSTSKP*ISETDKYSSSMFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT 589 FW*GSE P DKYSS M P P L+Y+P SGTP V A+ Subject 6854 FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTAS 7021
Range 5: 6357 to 6551 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 22/65(34%) | 0/65(0%) | Minus/Minus |
Query 9 VLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRLFK 203 +++ + ETH ++M + L S F+ V R + I+IN IFQ+ F SN L +K+R F+ Subject 6357 MIMLHNETHTIVMSIHLLGS*VQIEIFTHLVCARNFNSIVINTIFQVPCFSSNLQSLQDKIRFFE 6551
Range 1: 5844 to 6113 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 57/90(63%) | 0/90(0%) | Plus/Plus |
Query 3 GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVIV*ALSVWHGV 272 GI+KKPQL+ ER+CIA+E NL NCIDNYAIEVSYAY+LGEL++ M EEE EA YNCVR +V+NKH ++ SIS LF+ I *+ + GV Subject 5844 GIYKKPQLVLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGV 6113
Range 2: 6153 to 6359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 40/69(58%) | 0/69(0%) | Plus/Plus |
Query 279 MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPY 485 M+ LV F F V VL+ PV+ H VPG+GKS+LIRELI+ D F+AFTAG PD PNL+GR IK Y Subject 6153 MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY 6359
Range 3: 5843 to 6115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 45/91(49%) | 0/91(0%) | Minus/Minus |
Query 2 LTPCQTLKA*TITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP 274 +TP + + I+ NK EIE CLF T TQL AS SSS I+ NSPSL A*+TS+A*LS+Q KL +S A+ S S GFL +P Subject 5843 ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAIHRRSSTSCGFL*MP 6115
Range 1: 5708 to 5941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 48/78(62%) | 0/78(0%) | Plus/Plus |
Query 3 GIFKKPQLIWERICIAREIGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 236 GI+KKPQL+ ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++ M+EEEV A YNCVR ++RNKH ++ + G++E Subject 5708 GIYKKPQLVLERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE 5941
Range 2: 6022 to 6231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 37/70(53%) | 0/70(0%) | Plus/Plus |
Query 279 MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYS 488 M+ +V L F F + L+ P+VVH VPG+GKS+LIRELI+ D FVAFTAG+ D P+LTG +I+ +S Subject 6022 MDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTGNWIRKWS 6231
Range 3: 6232 to 6327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 12/32(38%) | 0/32(0%) | Plus/Plus |
Query 492 GCAVQGKINILDEYLSVSDIHGFDVLFSDPYQ 587 G A G +LDEY ++++ LF DP Q Subject 6232 GEASSGSFLVLDEYTLLTELPPAYALFGDPVQ 6327
Range 4: 5720 to 5908 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 30/63(48%) | 0/63(0%) | Minus/Minus |
Query 15 VLIPNQETHAVIMRFNFLLSHHAYR*FSKSVGIRYLDCIIINAIFQIAYFPSNADPLPNKLRL 203 +L+P + V+ NFLL+H R +K VGIR+L CIII+AI QI S+A PL ++LRL Subject 5720 MLVPYDYPYTVVKGANFLLTHAIDRLLTKRVGIRHLYCIIIDAIVQIIQLHSDAHPLQHQLRL 5908
Range 5: 6022 to 6210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 18/63(29%) | 0/63(0%) | Minus/Minus |
Query 279 SC*IWTVWHTCCESHERLVFRNELPY*ATFTATWNTMNNNWKFKHAEHTNKFKCRQSLD*VIH 467 +C W V+++ ES E V N+ FT +W+ MNN +F+ +++ K + + IH Subject 6022 TCEAWLVFYSGRESDESWVCVNQFTNQCAFTCSWDAMNNYGEFQLCAQSSETKLFKQTNYNIH 6210
Range 6: 5707 to 5931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 39/75(52%) | 0/75(0%) | Minus/Minus |
Query 2 PEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPISLAMQILSQIS*GFLKIP 226 P CLF RTQL* A TSSS++ SP *A TSIA*LSMQ +L S+AM ILS +*GFL +P Subject 5707 PRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILSSTN*GFLYMP 5931
Range 7: 6132 to 6221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 17/30(57%) | 0/30(0%) | Minus/Minus |
Query 389 LMYLPVRFGLSGTPAVKATKDSSSEMSSLI 478 L+ LPVR G S PAVKAT S+ +SS I Subject 6132 LIQLPVRLGSSSIPAVKATNLGSALISSRI 6221
Range 8: 5713 to 5943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 31/77(40%) | 0/77(0%) | Plus/Plus |
Query 8 L*KASAYLGEDLHC*GNRQFGKLH**LCNRGILCLQTWRIIYRRDD*GGS*SAL*LRAFPGSE*AQNEVLNFWFV*G 238 +*+AS GED+H G +LH *LCNRG +CL +W + +*GGS L L E A +V + W +*G Subject 5713 I*EASIGAGEDVHRYGVE*SAQLHR*LCNRGGVCLLSW*EGGQSHE*GGSWRLLQLCTDNHKEQASXKV*SPWGL*G 5943
Nucleotide Sequence (915 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
695.3 | 2319.3 | 33% | 0 | 45% | NC_001948 | |
237.0 | 298.6 | 11% | 1.893e-61 | 43% | NC_029087 | |
152.7 | 406.3 | 20% | 3.665e-73 | 41% | NC_018714 | |
156.4 | 424.7 | 19% | 1.687e-72 | 40% | NC_014821 | |
154.1 | 464.8 | 14% | 1.878e-70 | 27% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3767 to 4681 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
695.3 bits(1511) | 0.0 | 285/305(93%) | 0/305(0%) | Minus/Plus |
Query 1 ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 915 ICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF Subject 3767 ICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 4681
Range 2: 3769 to 4680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
539.5 bits(1171) | 0.0 | 250/304(82%) | 0/304(0%) | Plus/Minus |
Query 2 KSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQ 913 KSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNL LS LYLY PSS+L+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA TL SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPV+PPSKHP +FSA SKLGK VI DPF E +SRADRLTFR+SSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP SHLAQ Subject 3769 KSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQ 4680
Range 3: 3767 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.5 bits(368) | 0.0 | 76/163(47%) | 0/163(0%) | Plus/Minus |
Query 427 IHF*VPFD*IC*SSPR*DECYKFSFRSLHEALV*ETLSSPKCAKHNCQFSLFDVRS*HSSKPRL*IVKFLITYHASQTPQQAPLKFFRPLKTWKICYL*PVQRKQVKG*SFNFSQLIHLYTLRPVTNLFDMPNVFICYVKQSRYAPARINNLNFAIDITFGTD 915 IHF + FD*IC*S+ ++ Y+F+ R HE LV ETL SPKC KH+ QF ++ S ++ KPR I + LITY+AS P Q L+ F PLK W++ Y P+ K+++G S + Q IH Y LR +T +MP V I YVKQ R RIN+ N +I ITF + Subject 3767 IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSAN 4255
Range 4: 4301 to 4681 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 73/127(57%) | 0/127(0%) | Plus/Minus |
Query 1 EVMHIVEDCIISKGCSH*TFFEVTWQSRFKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP 381 +VMHI+EDCIIS+ SH FEVTWQS F+H ++KPPA V+PI + +Q +YVTL S QN I LR+ICALT ITSK +ES+T NK+ *IDV+RR+ L+ IK+H + SL +CNF KE+ K IP Subject 4301 KVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP 4681
Range 5: 4285 to 4680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 69/132(52%) | 0/132(0%) | Minus/Plus |
Query 2 IKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEVARRKVI*VQLGEPEVCKSDV*I*TAMSLQKRFNDCSLC*LCNLPQYA*L 397 +KEG +GC * P*+S R +GW L D ** + SW+HRSM + Y+ * FH +CW*S+SKHI* +K FG * E*H A + +*V + EVC+ +V I TAMSLQK +DC *LCNLP YA*L Subject 4285 VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*L 4680
Range 6: 3778 to 4239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 69/154(45%) | 0/154(0%) | Minus/Plus |
Query 443 M*CQWRN*GY*SGRAHICSV*HNK*TH*ACRKDW*RASKYKGG*AAKS*TISP*PAFSERVKDNIFSKF*EGGKTSGVLAGGFDWRDK**EI*RFKALACWSVNF*HQTKRIDSCAWHIWGWKEFPIQELHEEI*RKICNIRLT*ASSSKFNQK 904 M* +WR+* *S + C V*HN * H AC ++ * S++K G* A+ I P F+E V +N+ K * G K + + A G +WR K**E+ K LA W + +*+ K ID AW+IWGW+EF +QE HE++* I N+ + SKFNQK Subject 3778 M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK 4239
Range 7: 4350 to 4679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 58/110(53%) | 0/110(0%) | Plus/Minus |
Query 3 SHAYCGRLHNQQRLQSLNLF*SDMAV*IQTSDLQTSGSPSCTYMTFLRATSICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 332 SHAY GRLHNQ++ QS + F*SDMAV I+T QTS TY +A +CHS Q PK F +HMCFD DHQQ +*K H * IDRC QE HQ+S + QP Subject 4350 SHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP 4679
Range 8: 3777 to 4256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 73/160(46%) | 0/160(0%) | Plus/Minus |
Query 426 HPFLGPF*LNLLELA*VRRMLQIFLQIXXXXXCIGNSFQPQMCQAQLSILFV*CQKLTLQQAKALNR*ISHHLSRQSNPPASTPEVFPPSQNLENMLSLTRSEKAGQGLIV*LFAAHPPLYFEARYQSFRHA*CVHLLCQTEQICARPD**PQFRH*HHI 905 HPF F*LNLL+ ++ L+I+ Q S*+SC NS QPQM QA+ SI * Q Q+AK L+ * SHHL RQ P A+ F P+Q+L + L T S K +G I * A HP L E Y +HA C H LCQT Q D* Q H +HI Subject 3777 HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI 4256
Range 9: 3777 to 4190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 64/138(46%) | 0/138(0%) | Minus/Plus |
Query 492 NVMSMAKLRLLIRAGAYLLCLT*QMNTLGMSKRLVTGLKV*RWMSCEKLNDQPLTCFL*TGQR*HIFQVLRGRKNFRGACWGV*LA**VMRNLTIQSLGLLECQLLTSNKEN*QLCLAHLGLERVSYTRAS*RDLKEN 905 NV+ M +L+ LIR +L CLT* M+T GM ++ V L+ *+WM+C + +D P F * G +* Q L G K+ + C G *LA *VMR+ +Q+LG L LL ++ N* CL HLGL RVS TR S*+ L+ N Subject 3777 NVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN 4190
Range 10: 4467 to 4679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 43/71(61%) | 0/71(0%) | Minus/Plus |
Query 3 KAHMILKKIELFWVLNRVTY*GCSKESHIGTTWRAGGL*IRCLNLDCHVTSKKVQ*LQPLLIMQSSTICMT 215 KAHM K+I FW L+RVTY C + IG T +AGGL* +C N DCHVTSK+ +*L LIMQSS ICMT Subject 4467 KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMT 4679
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3451 to 4152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.0 bits(511) | 0.0 | 108/234(46%) | 0/234(0%) | Minus/Plus |
Query 70 LRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPC 771 L V +++LL G+ ITY P RA +L L GG TG IS +ND V S R L V+LGTFGAGKS L+K FM ++G+ +T+VSPRR LA D+++D + K++ + W V TFE FL + ++ G VI DEVQL+PPGY+DL L ++ I L GDPCQS YDS+KDR E SDI ++LE K Y YN+ SRRFVN +E RLPC Subject 3451 LTAVTEESVELLRGCGTLITYQPDQGRALRLAKNLHGGQTGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPC 4152
Range 2: 3840 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 45/104(43%) | 0/104(0%) | Plus/Minus |
Query 71 HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ 382 HG S + FT RL L LY SS L +SL S K+ LSF S L GSP+++M R RS PGG S TSS IT P + R SKV T Q Subject 3840 HGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ 4151
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 4360 to 4734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 59/125(47%) | 0/125(0%) | Minus/Plus |
Query 1 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 375 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L + I +AGDPCQS YDS DR I +SDI+R L G+SY++N+ S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4360 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF 4734
Range 2: 3820 to 4299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 65/160(41%) | 0/160(0%) | Minus/Plus |
Query 436 ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 915 IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L G TGV+ K A + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3820 ICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4299
Range 3: 4164 to 4265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 18/34(53%) | 0/34(0%) | Plus/Minus |
Query 470 LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVN 571 LG+T V FP D M L R+LFP PNVP +N Subject 4164 LGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN 4265
Range 4: 4503 to 4703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 28/67(42%) | 0/67(0%) | Plus/Minus |
Query 32 SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA 232 S+ + V K GSL IGF NL L L L P L MSL KI S S L GSPA Subject 4503 SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA 4703
Range 1: 4363 to 4737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 58/125(46%) | 0/125(0%) | Minus/Plus |
Query 1 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 375 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YDS DR I +SDI+R+L G++Y++N+ S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEF 4737
Range 2: 3823 to 4095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 36/91(40%) | 0/91(0%) | Minus/Plus |
Query 643 ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 915 IC D GE+ ++N GGRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L L G TGV+ Subject 3823 ICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL 4095
Range 3: 4153 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 436 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 585 + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4153 VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 4: 4161 to 4280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 20/40(50%) | 0/40(0%) | Plus/Minus |
Query 458 ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 577 AR LGET V FP D M L R+L P P VP N L Subject 4161 ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL 4280
Range 5: 4506 to 4706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 30/67(45%) | 0/67(0%) | Plus/Minus |
Query 32 SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA 232 S+ + V K HGSL + GF N L L L P + L MSL KI LS S L*QGSPA Subject 4506 SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA 4706
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 4359 to 4733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 58/125(46%) | 0/125(0%) | Minus/Plus |
Query 1 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 375 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G+SY++N+ S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF 4733
Range 2: 3819 to 4091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 33/91(36%) | 0/91(0%) | Minus/Plus |
Query 643 ICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 915 IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG+++ Y PS +RA L G TGV+ Subject 3819 ICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL 4091
Range 3: 4149 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 436 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 585 + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4149 VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 4: 4157 to 4264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/36(50%) | 0/36(0%) | Plus/Minus |
Query 470 LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 577 LGET V FP D M L ++LFP PNVP ++ L Subject 4157 LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL 4264
Range 5: 4502 to 4729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 32/76(42%) | 0/76(0%) | Plus/Minus |
Query 5 SCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA 232 SCIL + S+ + V L+ G+L N GF NL L L L P L +SL K+ LS +S L*QGSPA Subject 4502 SCILSQRVYSSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA 4729
Range 6: 4358 to 4462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 16/35(46%) | 0/35(0%) | Plus/Minus |
Query 272 RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT 376 +S+*PGG S* SS T *P+ SKV T Subject 4358 KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT 4462
Range 7: 4359 to 4733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 34/125(27%) | 0/125(0%) | Plus/Minus |
Query 1 EVMHIVEDCIISKGCSH*TFFEVTWQSRFKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGND 375 E+++ V ++ S EV QS KH I +P + + E +T ++++ I +I LTR+TS + + K I + R+ LNFI +++T L A E FK D Subject 4359 ELLYTVPKSVLLLI*SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD 4733
Nucleotide Sequence (483 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
329.6 | 1012.3 | 47% | 1.145e-89 | 43% | NC_001948 | |
113.3 | 291.1 | 56% | 4.739e-38 | 36% | NC_008552 | |
110.1 | 243.3 | 47% | 3.827e-39 | 49% | NC_028111 | |
115.6 | 264.1 | 29% | 1.086e-39 | 43% | NC_009991 | |
111.0 | 239.2 | 45% | 2.281e-37 | 48% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 758 to 1204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.6 bits(713) | 0.0 | 134/149(90%) | 0/149(0%) | Plus/Plus |
Query 2 MLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL 448 +LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSGSLL Subject 758 LLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSGSLL 1204
Range 2: 760 to 1203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 117/148(79%) | 0/148(0%) | Minus/Minus |
Query 4 SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKS 447 S+EPLLPQ +TSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKHRM E +RL IGVKL+K NFE ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS Subject 760 SKEPLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMSTE*REPSGRTTDLALSRYLHDKGCEYISFQLPSGAKS 1203
Range 3: 760 to 1212 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 65/151(43%) | 0/151(0%) | Plus/Plus |
Query 4 ALCSGW*LV*NVFTTIVK*VFA*S*ISGLI*WFTLCGRCPPFKILPSLIELHPNQ*SSSF*HSVFLWF*RHRH*GSGASKSRYA*LLSGAS*CCY*NISLFENPQKT**GICRGEIASAYRQAYWKGD*IH*GFCFTCHKLWKKWLSAFIQ 456 AL + W L *+V TT V + A I W TL G KI L HP *S F H++F W +RH S SK R+A LL S*CC *+ISLFEN Q+ *G+CRG+ ++ +R+ + +GD ++ GF T +KLW++WL A+ Q Subject 760 ALRTRWQLE*DVLTTFVMQIPAQGQICSSARWLTLLG*HHSLKI*SPLA*FHPYG*SFDFKHAMFFWLRCNRHKRS*TSKPRHAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEWLFAYAQ 1212
Range 4: 759 to 1100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 51/114(45%) | 0/114(0%) | Minus/Minus |
Query 3 PRQIPYQVF*GFSNKDIF**QHHDAPESSYAYRDLEAPDP*CRWRQNQRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPLI*L*ANTYLTMVVNTFHTSYHPEQRA 344 PRQ PY * FSNKDI * QHHD S+ A R LE D C ++Q+N C K +DY G*+ S IL+ +P SV+H+ I *A +T VV+T H+S H +RA Subject 759 PRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE*CQPSSVSHRAELQIWP*AGICMTKVVSTSHSSCHLVRRA 1100
Range 5: 1137 to 1211 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 13/25(52%) | 0/25(0%) | Minus/Minus |
Query 381 WMKAESHFFHNL*QVKQNPQ*I*SP 455 W A+SH HNL V++NP+* SP Subject 1137 WA*AKSHSSHNLLLVRKNPR*TLSP 1211
Range 6: 759 to 1106 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 51/116(44%) | 0/116(0%) | Plus/Plus |
Query 3 CSLLRMVTGVKCIHNHCQVGICLKLDQWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSLVLTPSALRIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKNLIRNLPRRN 350 CS +M TG++C HN C C + D M HA R S QN T SP +IF* T V L A +I +L* A C A + IMML L+YIFI*E S++ IR+LPR++ Subject 759 CSSHQMATGMRCTHNLCHADTCSRPDL*FCPMAHATRLTSFTQNLVTTCLVSPLWVIF*LQTCDVFLASMQ*A*KILNL*AAACTVASQYIMML*LRYIFI*ELSRSQIRSLPRQS 1106
Range 7: 881 to 1210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 49/110(45%) | 0/110(0%) | Minus/Minus |
Query 125 G*KQRATSSTTYDK*SKILNEFNLPSSRLVDKLTQFRLGRFLIRFFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQILNADGVKTRETPNVRN*KIIDWGEAQ*VMAEF*M 454 G KQRAT T Y * KIL++ LP +L++ LGR LI E SQIKIY S NIMM+ +A +H A *R +I A ++ R+T +V + KI GE + V+ +F*+ Subject 881 GHKQRATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*V 1210
Range 1: 881 to 1186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 51/102(50%) | 0/102(0%) | Plus/Plus |
Query 143 HLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL 448 H L+ + + IR F FDA+ L+PL R + FP+ +V++KIY YLRTL+KPD +SA AKL QLI PTG EIKFIE+FA LVI G+ S+L Subject 881 HHLTSITKGDAITEEIRTFGNFDAVSASHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLIVDPTGFEIKFIEEFAPLVIETGKMRSIL 1186
Range 2: 749 to 901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 25/51(49%) | 0/51(0%) | Plus/Plus |
Query 8 FAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 160 + PDG E Y+QPL +LLK + + L +G Y VD++HSKF HHL S T Subject 749 YYPDGVHAEGYTQPLDCSFLLKTKKIQLDNGEVYCVDLVHSKFSHHLTSIT 901
Range 3: 926 to 1147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 27/74(36%) | 0/74(0%) | Minus/Minus |
Query 188 SKILNEFNLPSSRLVDKLTQFRLGRFLIRFFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQILNADGVKTRETPN 409 S+ LN+FN +SR+ +LTQF G +R +GS+I I F+NNI +R++ + T Q+ + +K E+P+ Subject 926 SEFLNKFNFETSRVNYELTQFSYG*LNVRLLKGSEISINFANNINTNRESLTNVPTKWFQM*GRNSIKITESPD 1147
Range 4: 1000 to 1179 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 31/60(52%) | 0/60(0%) | Minus/Minus |
Query 262 EPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK 441 E +LP +T A SS+NLIS PVG ++S* N A AD SGF RVL+ IL+ T GK Subject 1000 ERILPVSITRGANSSINLISKPVGSTMS*PNLAMAD*TSGF*RVLRYL*ILLITLILIGK 1179
Nerine latent virus isolate Marijiniup 4, complete genome
Range 1: 960 to 1232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 47/91(52%) | 0/91(0%) | Plus/Plus |
Query 176 LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL 448 + ++R F FDA+ L+PL R + FP+ +V++KIY YLRTL+KPD +SA AKL QL+ PTG EIKFIE+FA LVI G+ S+L Subject 960 ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGKMRSIL 1232
Range 2: 795 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 27/51(53%) | 0/51(0%) | Plus/Plus |
Query 8 FAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 160 + PDG E Y+QPL S +LLK + + L DG Y VD++HSKF HHL+S T Subject 795 YYPDGVHSEGYTQPLDSSFLLKTKKIQLDDGETYCVDLIHSKFSHHLISIT 947
Range 3: 974 to 1231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 42/86(49%) | 0/86(0%) | Minus/Minus |
Query 190 SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHR 447 S E +LP +T A SSMNLIS PVG + S* N A AD SGF RVL+ IL+ T GK I RG R ASK K R Subject 974 SIERILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGKA*PIFLPRGLRCPADTASKLPKVR 1231
Range 1: 940 to 1203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 49/88(56%) | 0/88(0%) | Plus/Plus |
Query 185 NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL 448 N+R F FDA + LEPL+ + CFPV +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS S+L Subject 940 NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIISTNTIKSIL 1203
Range 2: 766 to 918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 28/51(55%) | 0/51(0%) | Plus/Plus |
Query 8 FAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 160 F PDG E Y QPL + YLLKA+ ++L DG Y VDV+ SKF HHL++ T Subject 766 FYPDGVRTEGYLQPLKNGYLLKAKRILLPDGGVYHVDVVQSKFAHHLIAIT 918
Range 3: 963 to 1175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 32/71(45%) | 0/71(0%) | Minus/Minus |
Query 208 MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMAS 420 M ++AKS NLIS P G I+ + A AD SGF V + RY L TTS TGKQ + GS +AS Subject 963 MINDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS 1175
Range 1: 935 to 1189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 43/85(51%) | 0/85(0%) | Plus/Plus |
Query 173 LLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISC 427 L+ +R FSGF+A K + PL R + SCFP+H +++ +IY YLRTLKKPD +S+ AKL Q++ PTG EIKF E+F+ L+++C Subject 935 LINQKMRPFSGFEATSSKGISPLMRKVGSCFPIHPNLILRIYRYLRTLKKPDLQSSMAKLSQVLPNPTGPEIKFFEEFSKLLLNC 1189
Range 2: 767 to 925 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 26/53(49%) | 0/53(0%) | Plus/Plus |
Query 2 MLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 160 +++APDG E Y QPLS YLLK + L DGS Y++D++ S F HHL+ T Subject 767 LIYAPDGCMQEAYIQPLSGCYLLKTSGIELPDGSFYSLDLVKSTFSHHLICIT 925
Range 3: 958 to 1188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 37/77(48%) | 0/77(0%) | Minus/Minus |
Query 196 QLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEK 426 QL + SS NLIS PVG +* +FA D SGF VLK*RYIL C GKQ R++G +ASKP K Subject 958 QLSNNFENSSKNLISGPVGFGRT*LSFAMDDWRSGFFSVLK*RYILRIKFGCIGKQEPTLRIKGEIPFEEVASKPLK 1188
Nucleotide Sequence (544 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
352.1 | 1441.5 | 26% | 2.352e-96 | 63% | NC_001948 | |
114.7 | 139.1 | 23% | 2.176e-26 | 45% | NC_009892 | |
84.5 | 137.8 | 22% | 5.575e-26 | 36% | NC_024449 | |
85.8 | 179.2 | 33% | 9.345e-25 | 32% | NC_020996 | |
86.3 | 133.6 | 22% | 9.344e-25 | 31% | NC_002468 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6815 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
352.1 bits(762) | 0.0 | 145/150(97%) | 0/150(0%) | Minus/Plus |
Query 93 NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHRKKLVIMQ*NAFSAAC 542 NILDEYLSVQD SGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLD VIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHR+KL+IMQ*+AFSAAC Subject 6815 NILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAAC 7264
Range 2: 7018 to 7263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 74/82(90%) | 0/82(0%) | Plus/Minus |
Query 94 QAAEKAFYCIMTNFFLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPRTSHGNLNSELCATARSTASLPKHISTPSTSRVKGD 339 QAAEKA YC++ NF LCLVAAM*NQCLSSGVGSLDFKRVTTLKVEP TS GNLNSELCATARSTASLPKHISTPSTS VKGD Subject 7018 QAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGD 7263
Range 3: 6817 to 6969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 44/51(86%) | 0/51(0%) | Plus/Minus |
Query 388 EERYLQVFTPNLQVLDLMKCASFGILIFWYGSENSTSKPEMS*TDKYSSSM 540 EERYLQVFTPNLQV DLMKCAS G+L+FWYGSENSTSKPE S TDKYSSS+ Subject 6817 EERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSI 6969
Range 4: 6815 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.0 bits(524) | 0.0 | 103/150(69%) | 0/150(0%) | Plus/Minus |
Query 93 AGC*KGILLHNDQFLPMSCGSDVKPVPVLWGWVS*FQKGYHIEG*TSNLTRQLEFRVVRNSEIYRLLAKTYQHPFNI*SEGRSHNDVVQPVAANFKTERGKVFASVHTKPTSFGLNEMRLFWNTDILVRV*KQYIKTRNVLNGQVLIKYV 542 AGC*KGILLH+ QFLP+SC S+VKPVP+LWGW+S*FQK Y ++ *TSN TR EFRVVRNSEI+ LL K Y HPFNI* + R HND VQ V AN KTE GK+FAS+H KPTSF L+EM LF N D+LV V +Q+IKT +L+GQVLIKY+ Subject 6815 AGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYI 7264
Range 5: 7009 to 7275 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 56/89(63%) | 0/89(0%) | Minus/Plus |
Query 82 HCGIALHSRC*RGADMFWQGGGRSRCCAQL*IQVAV*GSRFNLQCGNPFEIKRPNPRGQALVLHRCHKT*EEIGHYAVKCLFSSLLLSK 348 HCG+A ++RC*RGA+M W GG SRCCAQL*IQ+ +* RFN N FEIKR NPRG ALVLH C+KT EI ++AV+CLFSSL + + Subject 7009 HCGVAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQ 7275
Range 6: 6817 to 6969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 33/51(65%) | 0/51(0%) | Minus/Plus |
Query 388 HT**VLVRSRHFGF*CTVFRPVPEYQYSKRGAFH*VQNL*VWCEHLQIPFL 540 +T**VLVR R F F*C V P+P++Q+S RG FH V+NL*VW E+LQI FL Subject 6817 YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFL 6969
Range 7: 6819 to 7265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.1 bits(391) | 0.0 | 101/149(68%) | 0/149(0%) | Minus/Plus |
Query 92 YLMSTCPFKTFRVLMYCFQTRTRISVFQKRRISLSPKLVGLV*TLANTFPLSVLKLAATGWTTSLWDRPSL*MLKGC*YVXXXXXXXXXXXXXLNSSCRVRFEVQPSMW*PF*NQETQPQRTGTGFTSLPQDIGRNWSLCSKMPFQQPA 538 YLMSTCP K F+VLM C +T T+ S F KR IS S KLVGL * LAN FP SVL+LA T WT SLW R *MLKGC*Y L RR+ ISLLRTTLNS+ V+ EVQ * F*NQE QPQR GTGFT L QD GRN CSKMPFQQPA Subject 6819 YLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPA 7265
Range 8: 7032 to 7262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 54/77(70%) | 0/77(0%) | Plus/Minus |
Query 95 RLLKRHFTA**PISSYVLWQRCKTSACPLGLGLLISKGLPH*RLNLEPHTAT*IQSCAQQRDLPPPCQNISAPLQHL 325 RLLKRH TA* IS VL Q+CKTSA PLGL LLISK L *+LNL H *IQSCAQQRD PP Q+I APLQHL Subject 7032 RLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHL 7262
Range 9: 6819 to 6971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 34/51(67%) | 0/51(0%) | Plus/Minus |
Query 386 KRKGICKCSHQTYKFWT**NAPLLEY*YSGTGLKTVHQNPKCLERTSTHQV 538 +RK ICK S QTYKF T**N PL E * G G +T HQN K L RTSTHQV Subject 6819 RRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQV 6971
Range 1: 6731 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 51/113(45%) | 0/113(0%) | Minus/Plus |
Query 201 ILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLL 539 ILDEYLS + +GFD FSDP+QN AHF+ + RFG NT L S G+ V+S D++I + F ++EG +IC K D ++ E++LPC+VRGSTF VVT + Subject 6731 ILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Cherry twisted leaf associated virus isolate CTLV_8431, complete genome
Range 1: 6456 to 6647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 35/64(55%) | 0/64(0%) | Minus/Plus |
Query 351 NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDD 542 N+LDEYLS GFD+L SDPYQN P AHFI S T RFG + CKYL+ GF++ S +D Subject 6456 NVLDEYLSGPSYEGFDLLLSDPYQNFRKPLTAHFINSCTYRFGPSVCKYLNLLGFEIVSGREED 6647
Range 2: 6651 to 6827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 21/59(36%) | 0/59(0%) | Minus/Plus |
Query 177 DVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPE 353 ++I G F ++ G +ICF KE DL H+++F PC++RG+ F VT + + E Subject 6651 ELIFGKIFGGEIRGEIICFEKEVEDLLNKHSAKFHHPCDLRGAEFEHVTFISAHSDLQE 6827
Cherry rusty mottle associated virus isolate 95CI192R3, complete genome
Range 1: 6427 to 6603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 34/59(58%) | 0/59(0%) | Minus/Plus |
Query 366 NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSS 542 N+LDEYLS GFD+L SDPYQN P AHFI S T RFG + CKYL+ GF+++S Subject 6427 NVLDEYLSGPSYEGFDLLLSDPYQNFRKPLTAHFINSSTYRFGHSVCKYLNLLGFEINS 6603
Range 2: 6622 to 6798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 19/59(32%) | 0/59(0%) | Minus/Plus |
Query 177 DVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPE 353 ++I G F ++G +ICF KE +L H++++ PC +RG+ F VT + + E Subject 6622 ELIFGRIFEGTIKGEIICFEKEVQELLDNHSAKYHHPCNLRGAEFEHVTFISAHSDLQE 6798
Range 3: 6427 to 6618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 24/64(38%) | 0/64(0%) | Plus/Minus |
Query 351 VVQPVAANFKTERGKVFASVHTKPTSFGLNEMRLFWNTDILVRV*KQYIKTRNVLNGQVLIKYV 542 ++ + + KT KVF + TKP S ++EM W +IL+R+ KQ IKT + Q+L+K V Subject 6427 ILLSLRVDLKT**VKVFTNRMTKPISRTIDEMSSKWFAEILIRIGKQQIKTLVRRSRQILVKNV 6618
Range 1: 6462 to 6638 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 33/59(56%) | 0/59(0%) | Minus/Plus |
Query 366 NILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSS 542 N+LDEYLS GFD+L SDPYQN P AHFI S T RFGV+ C++L+ GF+++S Subject 6462 NVLDEYLSGPSYEGFDLLLSDPYQNFRKPLTAHFINSNTYRFGVSVCQFLNKLGFEINS 6638
Range 2: 6657 to 6833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 18/59(31%) | 0/59(0%) | Minus/Plus |
Query 177 DVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPE 353 ++I G F ++ G +ICF E ++ H+++F PC +RG+ F+ VT + + E Subject 6657 ELIFGKVFGGEIRGEIICFEAEVEEILRKHSAKFHHPCNLRGAEFDHVTFITAHQDLQE 6833
Nucleotide Sequence (421 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
260.0 | 792.2 | 33% | 8.7e-69 | 40% | NC_001948 | |
55.1 | 55.1 | 20% | 3.904e-07 | 33% | NC_009383 | |
56.5 | 56.5 | 19% | 1.505e-07 | 28% | NC_009892 | |
55.1 | 55.1 | 19% | 3.904e-07 | 28% | NC_014821 | |
54.7 | 54.7 | 19% | 5.363e-07 | 27% | NC_018714 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1193 to 1561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 104/123(85%) | 0/123(0%) | Minus/Plus |
Query 27 GSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSWFGLGNVHFNRQRAPYSLGVSHWLNSPFSVEHKFAGAIS 395 GSLLMPNISKLVISF CRMMPNALARLSSSFRE SLDSFVY+LEPFNFSV+L+D+TPDFFEHLFLFSCLNELIEED+EEVMD+SWFGLG++ FNRQRAP+ LG S+WLNS FSVEHKF+G I+ Subject 1193 GSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTIN 1561
Range 2: 1192 to 1560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 84/123(68%) | 0/123(0%) | Plus/Minus |
Query 28 LMAPANLCSTENGELSQCDTPSEYGAL*RLKCTLPSPNHELXXXXXXXXXXXXLRQENKNRCSKKSGVTSIRLTEKLKGSRA*TNESSEVSRKLEDNLAKALGIIRHKNDITSFEILGINREP 396 LM P NLCSTEN ELSQ + P + GAL RL C PSPN ELS+TSS SSSI+S RQE +N+CSKKSGV S +LTEKLKGS TNESSE SRKLE++LA A GIIR KND+T+ E+LGI++EP Subject 1192 LMVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKEP 1560
Range 3: 1184 to 1558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 56/125(45%) | 0/125(0%) | Plus/Minus |
Query 30 DGTCKLMLDREWRVKPV*YP**IWSPLTVKVHIAKSKP*TIHNLLNVLFNQLIEAGEQK*VLKEIRGHIYQANRKIERLKGVDKRVK*SFAET*RQPG*GIRHHPTQK*YHQL*NIRHQ*GTTLP 404 DG KL+L+ ++ V+P+* P PL +++ + KSKP +H+L NVL +QLI AGE+K*+LKEIR +I+ N KI+ LK V K + + ++ R+PG I HHP ++*Y QL N+ H+ T P Subject 1184 DGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRATPP 1558
Range 4: 1206 to 1559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 55/118(47%) | 0/118(0%) | Minus/Plus |
Query 29 CLIFQSW*YHFCVG*CLMP*PGCLQVSAKLHLTRLSTPLSLSIFRLA**M*PLISLSTYFCSPASMS*LKRTLRRLWIVHGLDLAMCTLTVRGLHIH*GYHTGLTLHSLSSISLQVPS 382 C F SW YH G*C M PG L + L T LS IF L * +* LISLS YF SPA MS* +RTL+R W + GLDL RG G H G T + S S Q PS Subject 1206 CPTFLSWSYHSFAG*CQMHSPGSLLAFESVR*IHLCTHLSPLIFPLI*WI*LLISLSIYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARGPRSFLGLHIGSTPNFQLSTSFQAPS 1559
Range 5: 1192 to 1581 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 52/130(40%) | 0/130(0%) | Minus/Plus |
Query 7 WFPIDA*YFKAGDIIFVSDDA*CLSQVVFKFPRNFT*LVCLRP*AFQFFG*PDRCDP*FL*APIFVLLPQ*AD*RGH*GGYG*FMVWTWQCAL*PSEGSIFTRGITLA*LSILCRA*VCRCHQPTKHTQH 396 W A +F G II + DDA C Q +F R F +C+ *A FF * + *FL*A I +LLP+* D G * G+G F+VWTW + EG + + LA L I A V R HQ + H + Subject 1192 WLFAYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVLSWVFILAQLQIFS*AQVFRHHQFSNHASY 1581
Range 6: 1215 to 1559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 49/115(43%) | 0/115(0%) | Plus/Minus |
Query 29 *WHLQTYARQRMES*ASVIPLVNMEPSDG*SAHCQVQTMNYP*PPQCPLQSAH*GRRTKIGAQRNQGSHLSG*PKN*KAQGRRQTSQVKFRGNLKTTWLRH*ASSDTKMISPALK 373 *W L+T A+ ++ S*A++ PS * QVQT N P*P Q P +S H GRR +I AQRNQ + * KN*+AQ Q + + K W H ASS +MI P K Subject 1215 *WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINAQRNQELYPLN*RKN*RAQVSTQMNLANTLES*KRAWRVHLASSGKRMI*PT*K 1559
Range 1: 1190 to 1441 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 28/84(33%) | 0/84(0%) | Minus/Plus |
Query 141 SLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 392 +L+ P + K + MP+ LA SS E SLD FV +EPF F V L+DV ++ + LFS E D+ ++++ + Subject 1190 TLIKPEVIKQFLGRWLGKMPHVLAVRFSSVAEVSLDEFVSQMEPFTFQVKLVDVDWNYHHNWDLFSKAEEDYGVDVCDLLNEGF 1441
Range 1: 1208 to 1453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 23/82(28%) | 0/82(0%) | Minus/Plus |
Query 141 LMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 386 L+PN+ KL+ +F + P+++AR F++ SLD+F+ +E FNFSV ++ + + + ++ DI+ + W Subject 1208 LLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW 1453
Range 1: 1204 to 1449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 23/82(28%) | 0/82(0%) | Minus/Plus |
Query 141 LMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 386 ++P++ ++V F ++ PN +AR ++ LD+F+ LE F+F V ++T D+ + L + + D++E DS+W Subject 1204 MLPDMKRIVQGFFLKLFPNPIARNFKVVQQLHLDNFIETLEDFSFCVPTEELTLDWKDDLEFVNLTFGETDFDLDESFDSTW 1449
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 1204 to 1449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 22/82(27%) | 0/82(0%) | Minus/Plus |
Query 141 LMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVSLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 386 ++P++ ++V F ++ PN ++R ++ LD+F+ LE FNFS++ D++ ++ + L + I+ ++EE S+W Subject 1204 MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW 1449
Nucleotide Sequence (350 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
245.8 | 804.6 | 31% | 1.232e-64 | 46% | NC_001948 | |
173.4 | 328.1 | 30% | 7.66e-43 | 32% | NC_009892 | |
170.6 | 264.7 | 32% | 5.15e-42 | 51% | NC_003462 | |
164.6 | 315.7 | 32% | 3.199e-40 | 29% | NC_014821 | |
165.1 | 310.7 | 30% | 2.328e-40 | 31% | NC_009991 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5222 to 5542 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 100/107(93%) | 0/107(0%) | Plus/Plus |
Query 1 ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 321 ESTRARWVGKMALKE+REVRCG+E TQQFFDEHRGG GEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASH Subject 5222 ESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASH 5542
Range 2: 5224 to 5538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.6 bits(403) | 0.0 | 80/105(76%) | 0/105(0%) | Minus/Minus |
Query 3 LAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLALVD 317 LAFNG DRK S++NFP G ARLS AAST GFEN +RFRTA++KV+ES PLCLG*MLS S ALL+CSP+PPLCSSKNC*V+S P RTSR SFKAI PTHLALVD Subject 5224 LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVD 5538
Range 3: 5222 to 5548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 50/109(46%) | 0/109(0%) | Minus/Minus |
Query 1 G*VASIQWDF**ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSPG*L 327 G + QWDF *E + EF + PQ SF+L L K SD H + +I+ M +NA K T IAQLLT + P+ IKELLS + T++L +LFQ HF +P PG*L Subject 5222 GIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*L 5548
Range 4: 5223 to 5531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 47/103(46%) | 0/103(0%) | Minus/Minus |
Query 2 SMGLLIGKCRAGIFRKALHASASQLPPVALKTLSVFGRPLKK*WSHYPYV*DKCSQNVHKHCSIAHPCPPCVHQRIAELSHAHIVPHDALSKPFSQPI*PWLT 310 SMG IGK I AS QL P A K FG+P + +H+ Y KC Q H HCS+AH P HQRI E H H P D LS+PF P PWLT Subject 5223 SMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLT 5531
Range 5: 5224 to 5532 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 48/103(47%) | 0/103(0%) | Plus/Plus |
Query 3 VNQG*MGWENGFERAS*GTMWA*DNSAIL**TQGGHG*AIEQCL*TF*EHLS*T*G**LHHFFNGRPKTLKVFKATGGSCEAEACKALRKIPARHFPIKSPIE 311 VNQG +G NG ER S G +W *++S IL** G + *A EQC+* *+HL * * ++ +G PK ++F+A G SC+ EA + + +I R FPI++PIE Subject 5224 VNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIE 5532
Range 6: 5223 to 5549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 52/109(48%) | 0/109(0%) | Plus/Plus |
Query 2 SQPGLDGLGKWL*KSIVRYDVGMRQLSNSLMNTGGAWVSN*AMLVNVLRAFILDIRVMTPSLF*WPSENA*SFQSHRWKLRS*GVQSLTENSCSTLSYQKSH*MLATYP 328 SQPG G KW *KSI R V M+ L+NSLM+ G VSN*AM V L+AF I+ M W SE+ +F+S R KL +*G + NS LSY KSH* P Subject 5223 SQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIP 5549
Range 1: 5120 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.4 bits(372) | 0.0 | 68/107(64%) | 0/107(0%) | Plus/Plus |
Query 1 ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 321 E+ RARWV K+ KE RE R GHE T+QF DEH G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +PL H Subject 5120 EAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKH 5440
Range 2: 5128 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 51/99(52%) | 0/99(0%) | Minus/Minus |
Query 9 GTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLAL 305 G + RKV RN P G A L+ A S G+E F TAI+ V ES+PLCLG*++S S AL+ C P LCSS NC V S P S SF +I THLAL Subject 5128 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLAL 5424
Range 3: 5129 to 5413 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 30/95(32%) | 0/95(0%) | Minus/Minus |
Query 10 *ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSP 294 *E +++EF+ +P +F+ WL + F + H*+ D V LM RIN+ F+ + L +F+ +LLS LM L+ +F +P P Subject 5129 *EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCP 5413
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5271 to 5591 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.6 bits(366) | 0.0 | 68/107(64%) | 0/107(0%) | Plus/Plus |
Query 1 ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 321 E+ RA+WV K+ +E RE R G TT+QF D+H G++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VPLN+SH Subject 5271 EAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSH 5591
Range 2: 5279 to 5587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 53/103(51%) | 0/103(0%) | Minus/Minus |
Query 9 LAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLAL 317 L F GT RKVSSRN P G A SFA S G E F TAI+ V S+PLCLG + S RS AL+N P L SS NC VV P R S S + TH AL Subject 5279 LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVNS*PRFLL*SSVNCSVVMSPMRNSLSSLEINL*TH*AL 5587
Range 1: 5275 to 5595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 66/107(62%) | 0/107(0%) | Plus/Plus |
Query 1 ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 321 E+ RA+WV ++ KE RE R G TT+QF DEH G +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VPL+ H Subject 5275 EAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKH 5595
Range 2: 5283 to 5591 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 54/103(52%) | 0/103(0%) | Minus/Minus |
Query 9 LAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLAL 317 L GT +KVS RNFP G A L+ A S G E F TAIK V S+PLCLG*M S S AL++ SP+ LCSS NC VV P R SR S + TH AL Subject 5283 LRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*AL 5591
Range 3: 5284 to 5589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 30/102(29%) | 0/102(0%) | Minus/Minus |
Query 10 SIQWDF**ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSP 315 +IQ D + ++++FS PQ F W + * F H*+ G+ +LMS +N F+ + + VFI EL +P S ++L +P SP Subject 5284 AIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSP 5589
Range 1: 4885 to 5202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 66/106(62%) | 0/106(0%) | Plus/Plus |
Query 1 ESTRARWVGKMALKEHREVRCGHETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNAS 318 ES RA+WV K+ KE REVR GH ++QF DEH G+QL+NA ERFE+IYPRHK ND++TF+MAV+KRLKFS+P E AKL A PYGKF+L FL K+P+N S Subject 4885 ESVRAKWVHKILAKEFREVRIGHLVSEQFTDEHPREQGKQLTNAAERFEAIYPRHKANDTVTFMMAVKKRLKFSRPATEKAKLVEAMPYGKFMLKEFLKKIPMNKS 5202
Range 2: 4887 to 5195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 49/103(48%) | 0/103(0%) | Minus/Minus |
Query 3 FNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSCPHRTSRCSFKAIFPTHLALVD 311 F G F R + NFP G A + A S G EN F TAI V S LCLG + SKRS AL++C P CSS NC P TS SF I THLAL D Subject 4887 FIGIFLRNSFNMNFPYGIASTNLAFSVAGLENLSLFLTAIMNVTVSFALCLGYIASKRSAALVSCLPCSRGCSSVNCSETRWPILTSLNSFARILCTHLALTD 5195
Range 3: 4885 to 5196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 32/104(31%) | 0/104(0%) | Minus/Minus |
Query 1 IQWDF**ESVEQEFSVRLCTPQLRSFHLWL*KL*AFSDGH*KSDGVITLMSRINALKTFTSIAQLLTHAPPVFIKELLSCLMPTSYLTMLFQSHFPNPSSPG*L 312 + WD E + EFS+ C Q F W *K D H + +I L+ R+ K I +LLT VFI +LL M + + +P P *L Subject 4885 VHWDLLEELFQHEFSIWHCLHQFSFFCCWS*KFKPLLDSHHERHSIIRLVPRVYCFKALRRIGELLTLFARVFIGKLLRNEMAYPDFSKFLCQNLMHPLGPD*L 5196
Nucleotide Sequence (405 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
297.1 | 957.9 | 30% | 5.528e-80 | 40% | NC_001948 | |
98.7 | 143.7 | 28% | 6.247e-28 | 47% | NC_018714 | |
98.2 | 214.6 | 40% | 8.547e-28 | 41% | NC_014821 | |
97.3 | 142.3 | 28% | 1.6e-27 | 46% | NC_003462 | |
87.7 | 216.4 | 36% | 8.551e-28 | 41% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3272 to 3673 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.1 bits(642) | 0.0 | 120/134(90%) | 0/134(0%) | Plus/Plus |
Query 3 FPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSGPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL 404 F VPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESE V LS P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL Subject 3272 FSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL 3673
Range 2: 3271 to 3672 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 97/134(72%) | 0/134(0%) | Minus/Minus |
Query 2 K*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVIMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGPERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQLPSPGTGK 403 +* +TSTSRLPSA+AMAVIMQP GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LTWC QN AIISFSA*AFS +C + G ER+ T SLST D IPAF+A PSVL +KPTECQKQLPSPGT K Subject 3271 R*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEK 3672
Range 3: 3272 to 3670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 62/133(47%) | 0/133(0%) | Minus/Minus |
Query 3 VIEHVYLTPSKC*CNGCNHAAIKRGTRLKMI*LQTQNST*RPLIFPKFPAHLIFWCYNDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FAFHERSYSCLQSQTVGAEKKAN*VPKAVTITRHRK 401 +I H+ TPSKC* NGC+HA I+ G L++I* + +NST* PL FP+FP + IFWC + + ++VPNAE* +H I ISI +L W K HERS + L +++ A+ K N +PKA+ ITRHR+ Subject 3272 II*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRE 3670
Range 4: 3504 to 3650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 30/49(61%) | 0/49(0%) | Minus/Minus |
Query 235 HAFQVLMQWL*SCSH*EGHKVENDLTSNTKFHIEATHFPQISSSPHILV 381 HAFQVL QWL*SC+H G V +DL +FHI ATH P+IS+ HILV Subject 3504 HAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV 3650
Range 5: 3270 to 3482 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 29/71(41%) | 0/71(0%) | Minus/Minus |
Query 1 GA*RRIRQSFHFLHKHFHQVASVWLGPKELNQLVIRFPRTILFLPSKPNRRC*EESQLSAKSSYHHQAQEK 213 GA RI +S H HKH + LG K+L+ PR I + P +C* ++Q +AKS+ HHQAQ K Subject 3270 GAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRK 3482
Range 6: 3346 to 3651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 49/102(48%) | 0/102(0%) | Plus/Plus |
Query 77 EGRNKIVRGKRITS*FSSFGPNHTEATW*KCLCRK*NDCLILR*APCETDHYNTRI*GELEIWGK*VASMWNFVFEVKSFSTLCPS*WLHDYSHCISTWKA* 382 +GR I RG+ SF P++ +CLCR+*+D +IL AP + +TRI* LEI G+*VA MWN + +KS T+ P+ WLHD+SHC STWKA* Subject 3346 KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA* 3651
Range 7: 3504 to 3662 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 31/53(58%) | 0/53(0%) | Plus/Plus |
Query 235 HQNMR*AGNLGKMSGLYVEFCV*SQIIFNLVPLLMAA*LQPLHQHLEGVR*TC 393 HQNM+ GN GK+SG YVEF +QI N P M A* QPL QHLEGV+ C Subject 3504 HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC 3662
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3460 to 3726 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 42/89(47%) | 0/89(0%) | Plus/Plus |
Query 138 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL 404 P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L Subject 3460 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVL 3726
Range 1: 3463 to 3729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 41/89(46%) | 0/89(0%) | Plus/Plus |
Query 138 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL 404 P + KQL N +AE E +A FC + ++L ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L Subject 3463 PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVL 3729
Range 2: 3343 to 3420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 16/26(62%) | 0/26(0%) | Plus/Plus |
Query 3 FPVPGDGNCFWHSVGFLLSTDGLALK 80 F V DGNCFWHSVG L+ DG +K Subject 3343 FDVDADGNCFWHSVGPLIGVDGECIK 3420
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3459 to 3725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 41/89(46%) | 0/89(0%) | Plus/Plus |
Query 138 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL 404 P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AI+SAL RREVDVL L Subject 3459 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVL 3725
Range 1: 3326 to 3580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 35/85(41%) | 0/85(0%) | Plus/Plus |
Query 150 KQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYL 404 +Q+ + +AE E +A FC + ++L +++ V+W F + L + NHF PC P+NGC++ AIASALGRRE+DVL L Subject 3326 RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVL 3580
Range 2: 3194 to 3283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 20/30(67%) | 0/30(0%) | Plus/Plus |
Query 3 FPVPGDGNCFWHSVGFLLSTDGLALKAGIR 92 F VPGDGNCFWHSVG L+ DG+ LK +R Subject 3194 FDVPGDGNCFWHSVGPLIGVDGILLKGILR 3283
Nucleotide Sequence (546 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
399.7 | 1601.4 | 38% | 1.062e-110 | 66% | NC_001948 | |
163.3 | 361.2 | 40% | 5.235e-60 | 56% | NC_008020 | |
162.4 | 315.7 | 47% | 6.136e-55 | 49% | NC_001361 | |
154.1 | 335.1 | 39% | 1.738e-55 | 48% | NC_010538 | |
150.4 | 366.7 | 55% | 6.747e-56 | 35% | NC_031089 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6248 to 6769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
399.7 bits(866) | 0.0 | 164/174(94%) | 0/174(0%) | Minus/Plus |
Query 24 KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVVD*ALSIWRCSSIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGR 545 KVQFVSNPTFCGWCLFKEG FKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE +D*ALSIW SIMNNLVKALSAFEF+GVFSVLKFPVVIHSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGR Subject 6248 KVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGR 6769
Range 2: 6249 to 6761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.1 bits(546) | 0.0 | 118/171(69%) | 0/171(0%) | Plus/Minus |
Query 32 *D*DCLEHLQ*KPQNSRPLRLTPLLNYSYHYQAHYV*QLET*AH*KHL*TRRLIML*LNYS*YSNNAKYLRPNQPLQTGLKLNTSFYACS*PGTSHNCSVPPPPLLSSFQLIAHPIYMHRTPLSHNCQYSSPNCPSLWLCIFAPKLVEVS*RFPP*TSTIHRMWG*KQTEP 544 *D* CLEHL *K NS P +L PLLNY YHYQAHY * LE *AH*KHL T+ L ML*LNYS*YSNNAKYLRPNQ LQ GLKL+ S YACS*P HN + PP SSFQ +A P+ MHR PLSHNCQY+SP CPS CI AP+L+E S*R P* +TI RMW KQTEP Subject 6249 *D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRLIEAS*RSLP*INTIRRMWDWKQTEP 6761
Range 3: 6247 to 6642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.8 bits(480) | 0.0 | 115/132(87%) | 0/132(0%) | Plus/Minus |
Query 151 NLSTLKTPINSKADNALTKLFIILEQRQILKA*STTSNRPEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGLETN*TL 546 NLSTLKTP NS ADNALTKLFIIL+ QILKA*S SNRPEIEHLILCLFLT+NLTQL* ASTSSSVIIS+ SSP+ YA*+TSIA*LSIQFS+LPISLAMHIRSQI+*GFLK+PSLNKHHPQNVGLETN*TL Subject 6247 NLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIPSLNKHHPQNVGLETN*TL 6642
Range 4: 6694 to 6774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 22/27(81%) | 0/27(0%) | Plus/Minus |
Query 19 LVLPVRLGLSGTPAVKATKLSSSEINS 99 + LPVRLGLSGTPAVKA K SSSEI+S Subject 6694 MYLPVRLGLSGTPAVKAMKFSSSEISS 6774
Range 5: 6472 to 6762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 71/97(73%) | 0/97(0%) | Minus/Plus |
Query 31 LCEVPG*EQA*NEVFNFRPV*SG*LGLKYLALFEYYE*FS*SIISLRVYRCFQCAQVSSCYT*CAW*W*E*FNKGVNLRGREFCGFHCRCSRQS*SH 321 LC + G EQA*+E+ NFRP+*S *LGLKYLALFEYYE*FS*SI+S+ V RCFQCA +SS ++*CAW*W*+*FNKG N RG EF FH RCSRQ *SH Subject 6472 LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SH 6762
Range 6: 6247 to 6420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 41/58(71%) | 0/58(0%) | Minus/Plus |
Query 373 QGSVCF*PHILWMVLV*GGNLQETSTNLGANMHSQRDGQFGELY*QLCDRGVLCI*IG 546 QGSVCF HIL MV +*G +LQE S NLGA+MH DGQ GELY*QLCDRG+LCI G Subject 6247 QGSVCFQSHILRMVFI*GRDLQEASINLGADMHC*GDGQPGELY*QLCDRGLLCIPTG 6420
Range 7: 6248 to 6769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 117/174(67%) | 0/174(0%) | Plus/Minus |
Query 24 PPREIRTVWNTCSESHKTLVL*D*LPYXXXXXXXXXXMYNNWKLEHTENTYKLEG**CFN*IIHNTRTTPNT*GLINHFKQA*N*TPHFMLVPNQEPHTIXXXXXXXXXXXXN**LTQSICIGHLYRIIVNTVLQIAHLSGYAYSLPN*LRFLEGSLLKQAPSTECGVRNKLNL 545 P EIR VWNTC ES++ L+L +*LPY*TT TTTRHTM + WK +HTENTYKL+ * CFN*IIHNT+ PNT*GLIN FK A*N* H MLVP+QE +TI++ LH HHFN *L+QS+CIG LYRIIVNT+LQ+AHL AY LP+*LR LE LK PS ECG+ NKLNL Subject 6248 PSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD*LRLLEDPFLK*TPSAECGIGNKLNL 6769
Range 8: 6249 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 79/119(66%) | 0/119(0%) | Minus/Plus |
Query 188 RFSLFLTPHSVDGACLRREPSRNLN*FGSEYA*PERWAIWRTVLTIMR*RCPMHIDWVSYQLK**QKRRWRHTTIV*GSWLGTSIK*GVQFQACLKWLIRP*VFGVVRVL*II*LKHYQ 544 RFSLF PHS DG LR+ SR+LN* GS YA RWA WR VLTIMR*R PMH DW S LK** +++WR IV SW GTSI+* QFQA LK LIRP*VFG++ VL*II*LKH Q Subject 6249 RFSLFPIPHSADGVYLRKGSSRSLN*SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQ 6605
Range 1: 5790 to 6092 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.3 bits(350) | 0.0 | 65/101(64%) | 0/101(0%) | Minus/Plus |
Query 243 KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVVD*A 545 KV F S+PTFCGW L K G +KKPQL+ ER+CIA+E NL NCIDNYAIEVSYAY+LGEL++ M EEE EA YNCVR +V+NKH ++ SIS LF+ + *+ Subject 5790 KVDFTSHPTFCGWNLTKYGIYKKPQLVLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*S 6092
Range 2: 6153 to 6344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 38/64(59%) | 0/64(0%) | Minus/Plus |
Query 24 MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGR 215 M+ LV F F V SVL+ PV+ H VPG+GKS+LIRELI+ D F+AFTAG PD PNL+GR Subject 6153 MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGR 6344
Range 3: 5810 to 6073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 49/88(56%) | 0/88(0%) | Plus/Minus |
Query 262 NRPEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVG 525 N+ EIE CLF T LTQL AS SSS I +SP+LYA*+TS+A*LSIQ KL +S A+H RS S GFL +P K PQ VG Subject 5810 NKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAIHRRSSTSCGFL*MPYFVKFQPQKVG 6073
Range 1: 5687 to 5977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 62/97(64%) | 0/97(0%) | Minus/Plus |
Query 252 VQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVV 542 VQFV+ PTFCGW L +G +KKPQL+ ER+CIA+EM NL NCIDNYAIEV+YAY+LGE ++ M EEEV A YNCVR +VRNKH +R + +FEV+ Subject 5687 VQFVNKPTFCGWHLCPDGIYKKPQLVLERMCIAKEMNNLSNCIDNYAIEVAYAYKLGEKAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDVKQVFEVL 5977
Range 2: 6019 to 6207 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 31/63(49%) | 0/63(0%) | Minus/Plus |
Query 27 MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTG 215 M+ +V L ++F + + L P+V+H VPG+GKSSLIREL+ D F A+TAGV D P L+G Subject 6019 MDVIVDLLYKYKFERLSNKLVCPIVVHCVPGAGKSSLIRELLELDSRFCAYTAGVEDQPRLSG 6207
Range 3: 5686 to 5976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 53/97(55%) | 0/97(0%) | Plus/Minus |
Query 253 TTSNRPEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGLETN*T 543 +TSN + CLF T LTQL* A+TSSS I+ SPNLYA TS+A*LS+Q +L IS AMHI S S GFL +PS ++ PQ VGL TN T Subject 5686 STSNTCFTSERMRCLFRTMILTQL*NAATSSSSILFTAFSPNLYAYATSMA*LSMQLLRLFISFAMHILSSTSCGFLYIPSGHRCQPQKVGLFTNCT 5976
Range 1: 5654 to 5941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 57/96(59%) | 0/96(0%) | Minus/Plus |
Query 258 KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 545 KVQ PTFCGW L +G +KKPQL+ ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++ M+EEEV A YNCVR ++RNKH ++ + G++E Subject 5654 KVQMTGTPTFCGWHLTPDGIYKKPQLVLERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE 5941
Range 2: 6022 to 6210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 34/63(54%) | 0/63(0%) | Minus/Plus |
Query 27 MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTG 215 M+ +V L F F + + L+ P+V+H VPG+GKS+LIRELI+ D FVAFTAG+ D P+LTG Subject 6022 MDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTG 6210
Range 3: 5653 to 5931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 45/93(48%) | 0/93(0%) | Plus/Minus |
Query 268 PEIEHLILCLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGLETN*TL 546 P CLFL TQL* A TSSS++ SP A TSIA*LS+Q +L S+AMHI S +*GFL +PS + HPQ VG+ TL Subject 5653 PRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILSSTN*GFLYMPSGVRCHPQKVGVPVIWTL 5931
Range 1: 5675 to 5959 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 56/95(59%) | 0/95(0%) | Minus/Plus |
Query 261 KVQFVSNPTFCGWCLFKEGTFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLF 545 KV F + PTFCGW L +G +KKPQL+ ER+CIA+E NL NCIDNYAIEVSYAYRLGE ++ M EEE A YNCVR +++NKH ++ ++ L+ Subject 5675 KVAFTNKPTFCGWNLTPDGIYKKPQLVMERMCIAKETNNLANCIDNYAIEVSYAYRLGEKALNRMDEEEAAAMYNCVRIIIKNKHLLKSDVATLY 5959
Range 2: 6016 to 6207 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 36/64(56%) | 0/64(0%) | Minus/Plus |
Query 24 MNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGR 215 M+ LVK L+ + FI + ++ PVVIH VPG+GK+SLIRE+I D FVA+T G+PD PNL GR Subject 6016 MDILVKYLNKYNFIRLSQSIRPPVVIHCVPGAGKTSLIREIIQADSRFVAYTCGIPDKPNLEGR 6207
Range 3: 5692 to 5928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 48/79(61%) | 0/79(0%) | Plus/Minus |
Query 292 CLFLTRNLTQL*CAXXXXXXXXXXXXXPNLYA*DTSIA*LSIQFSKLPISLAMHIRSQIS*GFLKVPSLNKHHPQNVGL 528 CLFL LTQL A+ SSS I SPN YA*+TS+A*LSIQF++L +SLAMHI S + GFL +PS K HPQ VGL Subject 5692 CLFLMIILTQLYIAAASSSSIRFNAFSPNRYA*ETSMA*LSIQFARLFVSLAMHILSITNCGFL*IPSGVKFHPQKVGL 5928
Range 4: 5730 to 5909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 21/60(35%) | 0/60(0%) | Plus/Minus |
Query 311 TSHNCSVPPPPLLSSFQLIAHPIYMHRTPLSHNCQYSSPNCPSLWLCIFAPKLVEVS*RF 490 +SHNC++ PL ++ HP M + P HNC+Y+ + S C F+P VS R+ Subject 5730 SSHNCTLQLLPLHPFDSMLFHPTDMRKRPQWHNCRYNLQDYSSP*QCTFSPSPTAVSCRY 5909
Nucleotide Sequence (1061 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
788.7 | 3360.6 | 31% | 0 | 65% | NC_001948 | |
167.9 | 474.2 | 36% | 2.786e-82 | 38% | NC_014821 | |
165.1 | 459.6 | 36% | 8.231e-80 | 38% | NC_003462 | |
165.6 | 488.9 | 27% | 1.549e-79 | 38% | NC_018714 | |
157.3 | 502.8 | 34% | 9.659e-69 | 33% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3680 to 4705 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
788.7 bits(1715) | 0.0 | 327/342(96%) | 0/342(0%) | Minus/Plus |
Query 24 PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLPTPNTP 1049 PSTNHIFEELCQGGGLNMMYLAE FEAFDICAKCDINGEIEVINP GKISALFDITNEHIRHVEKIGNGPQSIK+DELRKVKRSALD LSMNGSKITYFP+FERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGIST DIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDD CKVAKAG+SKKEGWDVVTFEVFLRKV+GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLL P Subject 3680 PSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGP 4705
Range 2: 3679 to 4704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
670.1 bits(1456) | 0.0 | 306/342(89%) | 0/342(0%) | Plus/Minus |
Query 25 GVFGVGRRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTTSHPSFFDLPALATLQPSSISRSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISAVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKFGK*VILDPFIERRSRADRLTFLNSSIFML*GPLPIFSTCLMCSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSSKMWLVLG 1050 G F + RRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFT LLSMLYLYV PSSSLSMSLCSAPKIARSFCESYVL HGSPASEMKASLR+ SKHRS+YPGGNN TSSKITQ PAF P TFLRKTSKVTTSHPSFFDLPALATLQ SSISRSFLIEFAKARLGETKVTN PSDLFMKLLYKKLFPAPNVPSTTV+SLG IS VDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSK GK*VILDPFIER+SRADRLTF NSS FML*GPLPIFSTCLMCSLV+SN AEILP GL+TSISPFISHLAQ+SKASK SAKYI+L PPP SSSK+ LVLG Subject 3679 GPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLG 4704
Range 3: 3671 to 4690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
522.0 bits(1133) | 0.0 | 231/340(68%) | 0/340(0%) | Plus/Minus |
Query 39 R*EEVMHIVEDCIISKGCSH*TFFEVTWQSRFKHWVHKTSAFYVVPICLSFKQSEYVTLLSSQNCSXXXXXXXXXXWITSK*NESITAYDK*TQIDISRGKQLNLIENHTMPSLQTRNFSKENFKGHYIPPFLL*FACFGNFAAIIHFKIIFD*ICQGSSRGNKSNKFSLRSLHETLIQETLSSPKCAKHDS*LSWLYIRS*YTRKPGFCITELFITYNTS*AP*QAPLQLFSPLKVWKIGYFGPIH*KKIKGGSLNLPQLIYFYALRAIADLLNMPYVLIGYIKQGGNLTIWVNDLNFPIYITLSANIKGLKSLSQVHHIKPSPLAQLLKNVVGARPTR 1058 R E+VMHI+EDCIIS+ SH FEVTWQS F+HWVHK AFYV+PI + KQS+YVTLLS+QNC ILL +ICAL WITSK*NESIT Y+K ID+SR KQL+LI+NHT+ SLQ+ NFSKEN K +YIPPFLL* CF NFAAIIHFKIIFD*IC +S NK +F+LR HETL+QETL SPKC KHDS WL I S YTRKP FCITEL ITYN S*AP*Q LQLFSPLK W++GYF PIH*K+I+GGSL+LPQ I+FYALRAI LNMPYVLI Y+KQ N T +N N IYIT SAN+KGLKS S +HH+K L +LLKN++ A T+ Subject 3671 RQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQ 4690
Range 4: 3685 to 4704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
480.8 bits(1043) | 0.0 | 226/340(66%) | 0/340(0%) | Minus/Plus |
Query 25 HQPHF*GAVPGGRA*YDVLG*DF*GL*YLR*V*YKWGN*GH*PKW*DFRLV*YNQ*AHKAC*EDRQWPSEHKNR*VEEG*AIRP*SSFNEWVQNNLFSKL*AG*KVARVLARGPNWCYK**KVQ*CKTLAFWYINCGYKAKRANCRAWHIWGWKEFLV*EFHEEI*GKICYFCFP*TSLGKFNQK*S*NG*WLQSCQSRQIKEGRVGCSDL*SFP*KSFWFEGWALCDFR*GSVVSPWIYRSVFTCHTQ*CFHFTCW*SMPEHI*FTEGSSNFGS*AE*HTQTA*RKDI*VQHRKQTFCEPNV*I*TAMSLQKRFNDCSLC*LCNLPQYA*LPPTDPKHT 1044 H +F*GA+ G *+DV * F*GL*+LR*+*YKW +* * W*+F +V*+N *AHKAC*E+R WPSEHK+ *+ EG AIRP FNEWV NNL KL*AG*KVAR+ ARGPNW YK**+VQ*CKTLAFWYI Y AK +CRAW+IWGW+EFLV EFHE++*G I CF T KFNQK*S*NG* LQSC SR +KEGRVGCS+ * FP*KS EGW LCDF *G VVS WI+RS+ +T *CFHFTCW*SM +HI* +GS NFG *AE*HT TA* +++*V HRKQ CEPNV I TAMSLQK +DC *LCNLP YA*L P + K + Subject 3685 H*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRS 4704
Range 5: 3696 to 4706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
447.4 bits(970) | 0.0 | 228/337(68%) | 0/337(0%) | Minus/Plus |
Query 23 FLRSCARGEGLI*CTWLRLLRPLIFALSVI*MGKLRSLTQMVRFPPCLI*PMST*GMLRRSAMALRA*K*MS*GRLSDPPLIFFQ*MGPK*PIFQTLSGLKSCKGAC*GA*LVL*VMKSSVMQNPGFLVYQLRI*SQES*LSCLAHLGLERVSCIRVS*RDLRENLLLLFPLDEPWQIQSKMILKWMMAAKLPKQANQRRKGGM**PLKFSLEKFLV*RLGIV*FSMRFSCFPLDISICVYLSYAVMLSFHLLVIHARAHMIHRRIEQFWELSRVTYSDCLKERHIGTT*KADVL*TQCLNLDCHVTSKKVQ*LQPLLIMQSSTICMTSSYRPQTHP 1033 FLRS R L *C L+LLRPL FAL+VI*M +L+ L ++V+F CL * MST*GMLR+ MALRA*K M+ GR SDPP I FQ*MG K*P Q LSGLKSCK C*GA*L L*VM+SSVMQN GFLVY L I SQ +*LSCL HLGL RVSC RVS*+ LR N LF D QIQSKMILKWM+AAKL KQ QRRKGGM** L+FSLEK *RL V*F MR SCF LD SI L Y VMLSFHLLVIH +AHM +RI QFW LSRVTY DCL+ + IG T*KA L*TQC N DCHVTSK+ +*L LIMQSS ICMT S+R Q P Subject 3696 FLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVP 4706
Range 6: 4065 to 4697 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.4 bits(645) | 0.0 | 142/211(67%) | 0/211(0%) | Plus/Minus |
Query 32 LGSVGGSHAYCGRLHNQQRLQSLNLF*SDMAV*IQTLGSQNVCFLCCTYMSFLQAV*VCHSAQLPKLLDPSVNHMCSGMDHQQVK*KHHCV*QVNTDRYIQGETTEPHRKSHNAQPSNQKLF*GKLQRSLHPTLPSLICLLWQLCSHHPFQDHF*LNLPRLV*GKQK*QIFPQISS*NSYTRNSFQPQMCQARQLALLALYPQLIYQKARV 664 L S G SHAY GRLHNQ++ QS + F*SDMAV I+TLGSQ CFLC TY QAV*VCHSAQ PKL DP +HMC MDHQQVK*KHH V* + DR IQ ETT PH+KSH+ QPS +LF*GK Q+ LHPTLPSL LL QLCS+HPFQDHF*LNL + V KQ+ +I+PQ S*NS TRNS QPQM QARQ LA Y IYQKA+V Subject 4065 LTSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKV 4697
Range 7: 3684 to 4025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 74/114(65%) | 0/114(0%) | Plus/Minus |
Query 704 GPLASTLATFQPAQSLENRLFWTHSLKEDQGRIA*PSSTHLFLCSEGHCRSSQHALCAHWLYQTRRKSYHLG**PQFPHLYHT*RKYQRPQKSQPSTSY*ALPPGTAPQKCGWC 1045 GPLA+ LATFQPAQSL +RLF THSLK ++GRIA*PS+ H LCSEGH SQHALCAH L QT +K YH * Q HLYH *RK QRPQK Q +TS * P APQK C Subject 3684 GPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*C 4025
Range 1: 3736 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 74/189(39%) | 0/189(0%) | Minus/Plus |
Query 483 PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL 1049 P+ +F+E+ +G G ++ L+ FE F IC D GE+ ++N G+I A F + EH+ H+ + S + +L +V SA+ L+MNG++I Y P+ +RA L L G TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI NDL Subject 3736 PAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 2: 4363 to 4737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 60/125(48%) | 0/125(0%) | Minus/Plus |
Query 48 VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 422 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YDS DR I +SDI+R+L G+TY++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEF 4737
Range 3: 4146 to 4301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 20/52(38%) | 0/52(0%) | Plus/Minus |
Query 484 RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA 639 +S L++ A+ LGETKV FP D M L ++L P P VP + L + ++ Subject 4146 KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFLSWTAS 4301
Range 4: 3756 to 3911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 23/52(44%) | 0/52(0%) | Plus/Minus |
Query 874 CSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSS 1029 CS N A ILP L SP +S L QI K SK + IL P P +SS Subject 3756 CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSS 3911
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3732 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 72/189(38%) | 0/189(0%) | Minus/Plus |
Query 483 PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL 1049 P+ +FEE+ +G G ++ L FE F IC D GE+ ++N NG+I A F + EH+ H+ + S + +L +V SA+ L++NG+++ Y P+ +RA L G TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI +DL Subject 3732 PAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 2: 4359 to 4733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 58/125(46%) | 0/125(0%) | Minus/Plus |
Query 48 VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 422 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G++Y++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF 4733
Range 3: 4142 to 4297 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 24/52(46%) | 0/52(0%) | Plus/Minus |
Query 484 RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA 639 +S L++ A LGETKV FP D M L K+LFP PNVP +S L + ++ Subject 4142 KS*LMDSASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFLSWTNS 4297
Range 4: 3749 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 23/53(43%) | 0/53(0%) | Plus/Minus |
Query 874 CSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSSK 1032 CS N A ILPF L SP +S L QI K S + +L P P +SSK Subject 3749 CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSK 3907
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3733 to 4299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 72/189(38%) | 0/189(0%) | Minus/Plus |
Query 483 PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL 1049 P+ +FEE+ +G G ++ L FE F IC D GE+ ++N NG+I A F + EH+ H+ + S + +L +V SA+ L++NG++I Y P+ +RA L G TGV+ K + + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI +DL Subject 3733 PAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4299
Range 2: 4360 to 4734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 59/125(47%) | 0/125(0%) | Minus/Plus |
Query 48 VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 422 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L + I +AGDPCQS YDS DR I +SDI+R L G++Y++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4360 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF 4734
Range 3: 4359 to 4703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 46/115(40%) | 0/115(0%) | Plus/Minus |
Query 79 SAKAAVIEPFLK*HGSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTT 423 S+ + V K GSL IGF L ML L + P L MSL KI RS S LWHGSPA M S RS+ PGGN+* SS T P+ S V T Subject 4359 SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPAIIMFTFRFNPSMIRSM*PGGNS*ISSMTTV*PSLMLSRCKMNNSNVLT 4703
Range 4: 4164 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 20/45(44%) | 0/45(0%) | Plus/Minus |
Query 484 RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVS 618 +S I+ A LG+TKV FP D M L ++LFP PNVP ++ Subject 4164 KS*FIDSASDLLGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN 4298
Range 5: 3750 to 3917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 24/56(43%) | 0/56(0%) | Plus/Minus |
Query 865 CLMCSLVISNKAEILPFGLMTSISPFISHLAQISKASKVSAKYIILSPPPWHSSSK 1032 C CS N A ILPF L SP +S L QI S + IL P P +SSK Subject 3750 CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSK 3917
Range 1: 4208 to 4588 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 64/127(50%) | 0/127(0%) | Minus/Plus |
Query 42 VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLL 422 V+TFE+FL ++ +K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQS YDS+ DR + SDI+ +L GK+YRYNI S+RF NP+F SRLPC +T +Y ++ ++ F L Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTLWDSITQFEL 4588
Range 2: 3587 to 4030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 49/148(33%) | 0/148(0%) | Minus/Plus |
Query 606 PSTNHIFEELCQGGGLNMMYLAETFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGNGPQSIKIDELRKVKRSALDLLSMNGSKITYFPNFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTADIKPRELTVV 1049 P ++E+ C G G + L FE F I A+ D G + +N +GKISA F + EH+ H++++ S I +L V +SAL LL +NGS+I+Y P+ +RA+ L L G TGV+ E ++ + + G+ + + T++ Subject 3587 PEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII 4030
Range 3: 4030 to 4116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 14/29(48%) | 0/29(0%) | Minus/Plus |
Query 517 WHIWGWKEFLV*EFHEEI*GKICYFCFP* 603 W++W W E +*E H +I K FCFP* Subject 4030 WYLWMW*EHSI*EVHIKITRKSYNFCFP* 4116
Range 4: 4207 to 4509 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 38/101(38%) | 0/101(0%) | Plus/Minus |
Query 121 GSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQCPAFKPETFLRKTSKVTT 423 G+ + GF LS+LY + P MS K RS S LW GSPA S + ++ RS PGG +* SS IT CP +R +SKV+T Subject 4207 GNREEKTGFLNL*LSILYR*LLPFKMWMMSESELAKR*RSSLLS*SLWQGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST 4509
Range 5: 4030 to 4146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 20/39(51%) | 0/39(0%) | Plus/Minus |
Query 487 SFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVP 603 S LI A+ LGETKV FP D M L + L P P VP Subject 4030 SHLISSARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP 4146
Range 6: 3814 to 4023 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 24/70(34%) | 0/70(0%) | Plus/Minus |
Query 613 VSSLGFISAVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKFGK*VILDPFIERRSRADRLTFLNS 822 V SL P L S+ ITPV P + + A S G+* I DP I R A LT S Subject 3814 VHSLRSAMFASSPSIMCLLEL*VSAHITPVVPAWRLLASV*ALSMEGE*EISDPLIIRSFSALLLTVWRS 4023
Range 7: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/68(49%) | 0/68(0%) | Minus/Plus |
Query 435 ADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKK 638 A+I R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Nucleotide Sequence (449 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
319.1 | 1369.0 | 25% | 1.536e-86 | 62% | NC_001948 | |
105.1 | 141.4 | 28% | 3.511e-27 | 44% | NC_018714 | |
90.0 | 209.1 | 22% | 1.103e-25 | 37% | NC_009892 | |
103.2 | 211.8 | 25% | 1.23e-26 | 40% | NC_014821 | |
102.3 | 138.7 | 27% | 2.302e-26 | 46% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3275 to 3694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
319.1 bits(690) | 0.0 | 128/140(91%) | 0/140(0%) | Minus/Plus |
Query 22 SVPGHGNCFWHSDGFLLSTDGFALKAGIRPFVESERLISSDLSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPSTKH 441 SVPG GNCFWHS GFLLSTDG ALKAGIR FVESERL+S DLSAP ISKQLEENAYAENEMIALFCIRHHVR IV+TPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGR EVDVLNYLCRPST H Subject 3275 SVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNH 3694
Range 2: 3469 to 3690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 67/74(91%) | 0/74(0%) | Plus/Minus |
Query 26 LVLGLHR*FNTSTSGLPSAEAMAVIMQPFSGAHGWK*LDFRQRIPHRGHSLSPNFQLTSYSGVTTISLTWCRIQ 247 LVLGLHR*FNTSTS LPSAEAMAVIMQPFSGAHGWK* D RQRIPHRGHS SPNFQLTSYSGV TI LTWCR+Q Subject 3469 LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQ 3690
Range 3: 3273 to 3485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 44/71(62%) | 0/71(0%) | Plus/Minus |
Query 231 RGAGYKIMQSSHSQHKHSLPIV*KWLELKDLN**GAHSPQKVECLPSERNHQY*AGNHLNAKSNCHDQVRR 443 RGA +IM+SSHS+HKHSLPIV*K L LKDL+ AHSP+K+E P + HQ * N NAKSNCH Q +R Subject 3273 RGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQR 3485
Range 4: 3271 to 3687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 96/139(69%) | 0/139(0%) | Minus/Plus |
Query 29 YLRTWSWQLLLAFRWFPAQY*WFRSEGRHSTFCGE*APY*FRSFSSNHF*TIGRECLC*E*DDCIILYPAPRKADSSNTRI*S*LEIWGK*VAPMWNSLPEVQSLPTMCPTEWLHDHGHCLSAWEA*S*CVKLSM*A*H 445 +L W WQLLLAF WF +*W +GR+S F GE*A RSFS ++F*TIGRECLC E*DD IIL+ APRKA S +TRI*S*LEI G+*VAPMWNSLP ++SLPTM PTEWLHDH HC S W+A*S*CVKLS+* H Subject 3271 FLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH 3687
Range 5: 3278 to 3694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 95/139(68%) | 0/139(0%) | Plus/Minus |
Query 22 VFGARPT*II*HINFRPPKR*GNGRDHATIQWGTWLEVIGLQAKNST*GPLTFPKFPTNFIFWCYYYQPYVVPDTK*CNHXXXXXXXXFQLFRNGWS*KI*TNKALTLHKRSNACLQSETISTEQETI*MPKAIAMTRY 438 + A T II*HINF P K * NG DHATIQWG WLEVI +AKNST*GPLTFP+FPTNFIFWC +Y+PYVVP+ +*C+HLIL ISILFQLFRN W *KI T +ALTLH+RSN L ++IS + +T MPKAIA+TR+ Subject 3278 MISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRH 3694
Range 6: 3267 to 3677 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 101/137(74%) | 0/137(0%) | Minus/Plus |
Query 39 TLSPYLVMAIAFGIQMVSCSVLMVSL*RQAFDLLWRVSALLVQIFQLQPFLNNWKXXXXXXXXXLHYFVSGTT*G****HQNMKLVGNLGKVSGPYVEFFA*SPITSNHVPH*MVA*SRPLPQRLGGLKLMC*IIYV 449 TLS LVMAIAFGI +V LM *R FDL WRVSA VQIFQ Q FLNNWKRMLM RMR* HY GTT*G ** HQNMKLVGN GKVSGPYVEFFA + ITSNH PH*MVA*S+PL Q L G+KLMC*II V Subject 3267 TLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICV 3677
Range 7: 3522 to 3686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 41/55(75%) | 0/55(0%) | Plus/Minus |
Query 30 C*AYIDNLTHQLQASQALRQWP*SCNHSVGHMVGSDWTSGKEFHIGATHFPQISN 194 C Y DNLTHQL A Q L+QW *SCNHSVG MVGSD GKEFHIGATH P+ISN Subject 3522 CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN 3686
Range 8: 3274 to 3423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 39/50(78%) | 0/50(0%) | Plus/Minus |
Query 293 CLEMVGAERSELIRRSLSTKGRMPAFRAKPSVLSRKPSECQKQLP*PGTE 442 CLE+ GAERS L +RSLSTK R+PAFRA PSVLS+KP+ECQKQLP PGTE Subject 3274 CLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTE 3423
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3430 to 3738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 45/103(44%) | 0/103(0%) | Minus/Plus |
Query 31 ERLISSDLSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPS 339 ++ + + P +SKQLE N +AE E +A FC + +RL V+ E +W F E L + NHF+PC P+NGC+I AIASAL R EVDVL L +P+ Subject 3430 DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPA 3738
Range 1: 3284 to 3589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 38/102(37%) | 0/102(0%) | Minus/Plus |
Query 34 ERLISSDLSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRP 339 ER + ++ + +Q+ + +AE E +A FC + ++L V++ V+W F ++ L + NHF PC P+NGC++ AIASALGR E+DVL L +P Subject 3284 ERCGRNGITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKP 3589
Range 2: 3191 to 3283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 17/31(55%) | 0/31(0%) | Minus/Plus |
Query 355 LISVPGHGNCFWHSDGFLLSTDGFALKAGIR 447 + VPG GNCFWHS G L+ DG LK +R Subject 3191 VFDVPGDGNCFWHSVGPLIGVDGILLKGILR 3283
Range 1: 3454 to 3741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 44/96(46%) | 0/96(0%) | Minus/Plus |
Query 31 LSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPS 318 + P +SKQLE N +AE E +A FC + ++L V+ E +W F E L + NHF+PC P+NGC+I AIASAL R EVDVL L +P+ Subject 3454 VKCPRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPA 3741
Range 2: 3349 to 3420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 13/24(54%) | 0/24(0%) | Minus/Plus |
Query 367 VPGHGNCFWHSDGFLLSTDGFALK 438 V GNCFWHS G L+ DG +K Subject 3349 VDADGNCFWHSVGPLIGVDGECIK 3420
Range 3: 3543 to 3737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 26/65(40%) | 0/65(0%) | Plus/Minus |
Query 35 GLHR*FNTSTSGLPSAEAMAVIMQPFSGAHGWK*LDFRQRIPHRGHSLSPNFQLTSYSGVTTISL 229 GL R TSTS AEAMA++ QPF+G G K*L + ++ S N Q+ S +T +L Subject 3543 GLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHSSLA*STFNL 3737
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3450 to 3737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 44/96(46%) | 0/96(0%) | Minus/Plus |
Query 31 LSAPTISKQLEENAYAENEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRPEVDVLNYLCRPS 318 + P +SKQLE N +AE E +A FC + +RL V+ E +W F E L + NHF+PC P+NGC+I AI+SAL R EVDVL L +P+ Subject 3450 VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPA 3737
Nucleotide Sequence (543 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
270.0 | 1464.3 | 33% | 5.068e-98 | 51% | NC_001948 | |
189.4 | 478.2 | 29% | 5.505e-64 | 29% | NC_009892 | |
193.5 | 477.0 | 33% | 1.419e-63 | 30% | NC_003462 | |
186.6 | 464.0 | 29% | 1.614e-61 | 31% | NC_014821 | |
175.6 | 497.6 | 67% | 6.485e-59 | 36% | NC_031089 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5189 to 5542 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.0 bits(583) | 0.0 | 109/118(92%) | 0/118(0%) | Plus/Plus |
Query 188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 541 WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASH Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASH 5542
Range 2: 5003 to 5137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 42/45(93%) | 0/45(0%) | Plus/Plus |
Query 2 VIRDLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 136 VIRDLLPGEP+FF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQ Subject 5003 VIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQ 5137
Range 3: 5188 to 5538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 88/117(75%) | 0/117(0%) | Minus/Minus |
Query 187 LAFSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 537 LAF+G +RK S+KNFPYG ARL+ AAST GFEN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P TSR SF AI PTHLALVDS+LL G+WVLNH Subject 5188 LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH 5538
Range 4: 5002 to 5121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 33/40(82%) | 0/40(0%) | Minus/Minus |
Query 1 MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLIT 120 +TF+ GSPH+FSSLTPSF PMLTLKPLKKLGSPGSKS +T Subject 5002 ITFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMT 5121
Range 5: 5006 to 5542 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 99/179(55%) | 0/179(0%) | Minus/Minus |
Query 5 VAGIQWNL*KESVK*KLPIWLCAP*FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEAGLTWKQIPY 541 + G QW+ E + *+ PIW P F SF+L L KF+T + HE+G+*II+FM W+ AFK TCIAQLL SSTP+ IKELL FITT+H + Q H ++PPGPG* Q+T D+GFKPF I*AF L NF ILIL +EKH+ *P +TT LLL + FI NAN++ +E LTW+QI Y Subject 5006 MTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISY 5542
Range 6: 5013 to 5537 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.1 bits(426) | 0.0 | 95/175(54%) | 0/175(0%) | Minus/Minus |
Query 12 WHSVEPLKGKCQVKTSHMALRALILQLRLEALKISDVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVHQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQVPQLRNPHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHLEAN 536 W S+ GK ++ SHM A + QL+ A KI D +P* R LNH+LY L CFQ HMHCS+A FH HQR V SFHNH + S P + PTWPWL P Y G GF*TI HLSI T QL NPHL GKA* L HH SP LHS QC* *+H*RS AHL AN Subject 5013 WLSMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AHLGAN 5537
Range 7: 5013 to 5537 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 98/175(56%) | 0/175(0%) | Plus/Plus |
Query 12 ICFQVSPASLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRNLSLNAQMRNGLKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLMNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNV*NFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MP 536 IC QVS S + LAL MK RRS VV G*+ CFS KMRI KL+ S NAQM+NGLKP S *V W+QPGPGG +W *++ + VVMK N+SLM+ GVE SN*AMHV+ LKA+ Q IK MIQ*P SW +V NF+S + KL N*G +HMG+ Y LS+ + H* P Subject 5013 ICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KP 5537
Range 8: 5002 to 5538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 91/179(51%) | 0/179(0%) | Plus/Plus |
Query 1 CNKGFASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGHAFPWPR*GLRS*GT*V*MLK*GMV*NPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL**TQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETSEIFKASSRSCKIKARKAIWEVFT*HFPFKGSTECQ 537 C+ FA R*A LL W *HW E*R GE +W* + K +AFP R*GL S* V MLK* MV*NP+P++* G+NQGQVG +G+E +WL*ND T+L** W A EQCM*++*KH+ K *R *F++L HG + S+IF+A SC+ +A + IWE+ FP + E Q Subject 5002 CHTRFAPR*A*LLQWL*R*HWKE*RC*GGEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQ 5538
Range 1: 5087 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 75/118(64%) | 0/118(0%) | Plus/Plus |
Query 188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 541 WFKTHIP+ LE+ RARWV K+ KE RE R G+E T+QF DEH +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +PL H Subject 5087 WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKH 5440
Range 2: 4910 to 5035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 29/42(69%) | 0/42(0%) | Plus/Plus |
Query 11 DLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 136 DLLPG+P F GF V+IGR+E VRE KL GDPWLK +FLGQ Subject 4910 DLLPGKPEFIEGFQVNIGRDEEVREPKLSGDPWLKTAIFLGQ 5035
Range 3: 5236 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 34/63(54%) | 0/63(0%) | Minus/Minus |
Query 337 GTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNC 525 G + RKV +N P G A LN A S G+E FLTA+R VTES+PLCLG ++S LS AL+ C Subject 5236 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVIC 5424
Range 4: 5089 to 5220 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 25/44(57%) | 0/44(0%) | Minus/Minus |
Query 190 LCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 321 LCSS NC V S*P L S SF +I THLAL S+ G+ VLN Subject 5089 LCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN 5220
Range 5: 4904 to 5383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 47/160(29%) | 0/160(0%) | Minus/Minus |
Query 5 WLCAP*FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEAGLTWKQIPY 484 W +P*F +F+ L + + F N H + + M I +F F+C+ L A +F+ +LL +T + FL ++ +PP P + W++ F+P + F FL + +L ++ P ITT L++ FIP N ++ET+ + L+ K+I Y Subject 4904 WHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT*FRLAYLFIPANIHLETLNKFRLSGKEINY 5383
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5238 to 5591 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 76/118(64%) | 0/118(0%) | Plus/Plus |
Query 188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 541 WFKTHIP+ +LE+ RA+WV K+ +E RE R G TT+QF D+H R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VPLN+SH Subject 5238 WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSH 5591
Range 2: 5055 to 5186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 27/44(61%) | 0/44(0%) | Plus/Plus |
Query 5 IRDLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 136 I DLLPG P GF +G +EGVRE KL GDPWLK +FLGQ Subject 5055 IIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ 5186
Range 3: 5390 to 5587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 36/66(55%) | 0/66(0%) | Minus/Minus |
Query 340 LAFSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN 537 L F GT RKVSS+N P G A +FA S G E FLTA+R V S+PLCLGY+ S S AL+N Subject 5390 LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN 5587
Range 4: 5051 to 5170 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 17/40(42%) | 0/40(0%) | Minus/Minus |
Query 1 MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLIT 120 + F+ GSP S +SLTPS P P G PGS+S+++ Subject 5051 LVFNHGSPTSLASLTPSSAPTWLWNPSMSSGRPGSRSIMS 5170
Range 5: 5240 to 5365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 19/42(45%) | 0/42(0%) | Minus/Minus |
Query 190 SSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 315 SS NC VV P S S TH AL S+L+ G+ VLN Subject 5240 SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN 5365
Range 6: 5085 to 5516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 43/144(30%) | 0/144(0%) | Minus/Minus |
Query 35 FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKE 466 FC R + Q+ N H+K I M +Y+F + + I+ LL + V I ELL +T + + + NP + WD+ +P L ++ NF + IL KE L*P IT S FI N +E+ E Subject 5085 FCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPILGRLNLIRDFNFKVRILPKEDLGL*PWITH*FSFSDTFISTNLALESFNE 5516
Range 1: 5242 to 5595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.6 bits(401) | 0.0 | 73/118(62%) | 0/118(0%) | Plus/Plus |
Query 188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 541 WFKTH+P+ LE+ RA+WV ++ KE RE R G TT+QF DEH R +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VPL+ H Subject 5242 WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKH 5595
Range 2: 5059 to 5190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 27/44(61%) | 0/44(0%) | Plus/Plus |
Query 5 IRDLLPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 136 I DLLPG P GF +G +EGVRE KL GDPWLK +FLGQ Subject 5059 IIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ 5190
Range 3: 5244 to 5597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 57/118(48%) | 0/118(0%) | Minus/Minus |
Query 190 LWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 543 L L GT +KVS +NFP G A LN A S G E F TA++ V S+PLCLG M S LS AL++ S L LCSS NC VV P SR S + TH AL S + G VLN Subject 5244 LCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN 5597
Range 4: 5055 to 5174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 17/40(42%) | 0/40(0%) | Minus/Minus |
Query 1 MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLIT 120 + F+QGSP S +S TPS P KP G PG++S+++ Subject 5055 LVFNQGSPTSLASRTPSSAPTWL*KPSISSGRPGNRSIMS 5174
Range 5: 5089 to 5451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 37/121(31%) | 0/121(0%) | Minus/Minus |
Query 35 IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKFLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKE 397 I + MSW+ F F+C+ + VFI EL + S F++ L ++P P + W M +P L K + F + LAKE L*P I+ LS+ I PN ++T + Subject 5089 ISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGISN*FSLSNALICPNLALKTFNQ 5451
Range 1: 4616 to 4969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 71/118(60%) | 0/118(0%) | Plus/Plus |
Query 188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASH 541 WFKTH+P ++LE RA WV K+ KE REVR GY + QF DEH +QL+NA ERFE+IYPRH+ ND+VTF+MAV+KRL+FS P E KL +AK YGKFLLD FL K+PL H Subject 4616 WFKTHLPQADLEGVRATWVHKIMAKEMREVRLGYLVSDQFTDEHSKQLGKQLTNAAERFETIYPRHRANDTVTFIMAVKKRLRFSNPAKEMGKLGQAKLYGKFLLDEFLKKIPLKRQH 4969
Range 2: 4445 to 4564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 25/40(62%) | 0/40(0%) | Plus/Plus |
Query 17 LPGEPSFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 136 LPGEP F + +++++G++EGV+EEKL GDPWLK M+FLGQ Subject 4445 LPGEPKFTHSYDLNVGKDEGVKEEKLAGDPWLKGMIFLGQ 4564
Range 3: 4615 to 4959 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 52/115(45%) | 0/115(0%) | Minus/Minus |
Query 187 FSGTFERKVSSKNFPYGFARLNFAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 531 F+G F + SSKNFP A +F S GFEN F TA+ VT SL CLG ++SNLS A ++C CSS N P+LTS S I TH+AL S+ G VLNH Subject 4615 FNGIFFKNSSSKNFP*SLAWPSFPISFAGFENLNLFFTAIMNVTVSLARCLG*IVSNLSAAFVSCLPSCFECSSVN*SDTKYPNLTSLISLAMILWTHVALTPSRSACGKCVLNH 4959
Range 4: 4438 to 4539 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/34(53%) | 0/34(0%) | Minus/Minus |
Query 10 SQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKS 111 S GSP SFSS TPS P LGSPG K+ Subject 4438 SHGSPASFSSFTPSSLPTFKSYECVNLGSPGKKA 4539
Range 5: 4610 to 4960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 42/117(36%) | 0/117(0%) | Minus/Minus |
Query 182 IQWNL*KESVK*KLPIWLCAP*FCSFDLRL*KFQTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFL 532 +QWN E +K*K I L *F F R+*+ Q F H + II+ + W+ + KS CI QL A +FI EL+ I S + FL +P P ++ W + FKP L Subject 4610 LQWNFL*EFIK*KFSIKLSLA*FPHFLCRI*ESQPFFYSHNECDSIISSVPWVNSLKSLGCICQLFAKLL*MFISELIRY*IPQSDLSHFLSHDFVDPRRPHTLEIRLW*VCFKPLL 4960
Range 6: 4731 to 4958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 29/76(38%) | 0/76(0%) | Plus/Plus |
Query 303 SSLMNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNV*NFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH* 530 +SLMN A+N* M +DL+ + Q ++MI W *+ Q L+ K N* S M +FYL S ++FH* Subject 4731 NSLMNIQSNLANN*QMQPRDLRLFTQGTELMILSHSLWL*KKG*DSQILQRKWGN*AKLSFMENFYLMNS*RKFH* 4958
Nucleotide Sequence (1158 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
665.0 | 2447.6 | 5% | 0 | 43% | NC_001948 | |
177.9 | 603.9 | 29% | 2.463e-70 | 39% | NC_009892 | |
135.8 | 464.9 | 21% | 4.199e-65 | 40% | NC_014821 | |
134.4 | 455.1 | 18% | 1.061e-62 | 41% | NC_018714 | |
133.5 | 411.5 | 21% | 3.722e-62 | 38% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6350 to 7312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
665.0 bits(1445) | 0.0 | 269/321(84%) | 0/321(0%) | Minus/Plus |
Query 194 REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWRVVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDRHRHW 1156 REMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+W + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIREL++EDE+FIAFTAGVPD+PNL+GRYIKPYSPGCAV G++NILDEYLSV D SGFDVLFSDPYQN+S+P+EAHFIKSKTCRFG NTCKYL SFGF + SD D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID HW Subject 6350 REMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHW 7312
Range 2: 6685 to 7311 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.6 bits(702) | 0.0 | 148/209(71%) | 0/209(0%) | Plus/Minus |
Query 195 QCLCRSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLTF*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK 821 QC + SM F PNSQ AEKA +CM+INF LCLVAAM*NQCLSS VGSLDF +VTT V P TSQG+L SELCA A+STASLPK ISTPSTS+ G+P +T S SL LKPK+ RYL VF+PNLQVFD MK ASLG L F YGSEN+TSKPE S TD+YSSS+ P TA PGE GLMYLP RLG+SGTPAVKAMK SSS SSLIK Subject 6685 QCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 7311
Range 3: 6352 to 6603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 66/84(79%) | 0/84(0%) | Plus/Minus |
Query 903 DKALTKLFIIITTRQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPIS 1154 D ALTKLFII+ Q LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS A*+TSIA*LS+QFSRLPIS Subject 6352 DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPIS 6603
Range 4: 6356 to 7312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
335.1 bits(725) | 0.0 | 160/319(50%) | 0/319(0%) | Plus/Minus |
Query 194 PMPMPIVNGVIVLAQFAGC*KGISLHDDQLLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIWVRK*HVKTRNVTYRQILIKYVYPPFYSTARGVWLDVPSREVGSVGNAGRKGYEALVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHNTPNT*GLIYSFKQPGN*APHLVLISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTH 1150 PMP P VNGV+V AQFAGC*KGI LHD Q L +SC SNV+PV I+ G I *FQ ++K TS TR FE ++R+ I+CLL KA *H NI K R N F++ VT +KT+G K+ I AK *L E+ L N D+L+WVR+ H+KT + Q+LIKY+ P++ T + L+VPS E+ +V N + YE L+L + Y*TTFTTTR+ MN+ WK +H NT+KLK Q FN*+IHN PNT*GLI SFK N*A HL+L+ + E +T+++ +F HHFN L+Q V IG L I++N +LQV H Subject 6356 PMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAH 7312
Range 5: 6708 to 7295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 98/196(50%) | 0/196(0%) | Minus/Plus |
Query 211 RTRAS*PLRPAFPTLPTSLEGTSSHTPLAVL*KGG*TYLMSICL*VTFLVLTCYFLTHIKMSVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*FAXXXXXXXXXXXXXXISNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERS*SSCSEMPFQQPANWAKTITPLT 798 R R S* + F T S EGT S V +G YLMS C F VL C TH K S F R S SQ+ LA I + F P VL VT K L R L ML+ C*+AL RRQ I LR SN+LV+ EV L +*NQ I+P I TG TLL QD R+* SCS+MPFQQPANWAKTITPLT Subject 6708 RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLT 7295
Range 6: 6355 to 6624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 48/90(53%) | 0/90(0%) | Minus/Plus |
Query 882 NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFRVV*SYRLGLKCLACCDYYE*LS*SFVYV*VCGC 1151 +G PGEL+* LC+ G+LC+ GR +*ND+ S L LC + + A DE+LNFR +*SY LGLK LA +YYE* S*S V +*VC C Subject 6355 DGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRC 6624
Range 7: 7036 to 7311 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 50/92(54%) | 0/92(0%) | Minus/Plus |
Query 195 C*GCANLLWQGGS*FSGCA*FRFQTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEVDHHAVKCLFSNLRIGPKLSPH*RSA*AL 470 C* AN+LW GGS CA Q +L* R * EIK S+ R *ALVLHCC KT E+D+HAV+CLFS+LRIG K H*+ A AL Subject 7036 C*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWAL 7311
Range 8: 6676 to 6981 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 44/102(43%) | 0/102(0%) | Minus/Plus |
Query 525 *K*FNKRTCH*GRELHSLYGRRSRHSQPLWKVHQAILPWLCCKREDKHT**VSVCK*HFWF*RVIF*PISKCQCSKGGSLHKVKDLQIWRKYM*VPSVLWF* 830 *K*FNK G E HS + R SR KVH A+ +C RE +T**V V F F* + PI K Q S G+ H+VK+L +WR+Y+ + +L F* Subject 6676 *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF* 6981
Range 9: 6348 to 6572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 37/75(49%) | 0/75(0%) | Minus/Plus |
Query 934 LVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEISTR*GAQFPGCLKL*IRP*VFGVL* 1158 L +W TWR L M+ R PM T W S LK** ++K + V S S R* AQF LKL IRP*VFG++* Subject 6348 LGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII* 6572
Range 10: 6357 to 6692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 61/112(54%) | 0/112(0%) | Plus/Minus |
Query 814 LLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SQHAKHLRPNL*LQTTRKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYP 1149 LLNYFYHYQ YE LEI*A KH QTQ T L*L+YS* S +AK+LRPN *LQ KLS SS A * H+ + L SSFQ P HR P H+ Q +SPG P Subject 6357 LLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCP 6692
Range 11: 7155 to 7310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 33/52(63%) | 0/52(0%) | Plus/Minus |
Query 196 NAYADRQWGDSFGPIRRLLKRHFTA**STSFYVLLQQCRTSAYHRRSDPLIS 351 NA A+ QW F PIRRLLKRH TA* S S VL QQC+TSAY D LIS Subject 7155 NAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7310
Range 12: 6765 to 6980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 31/72(43%) | 0/72(0%) | Plus/Minus |
Query 526 *NQRTEGTYMYFRQICRSLTL*SEPPLEH*HFDMGQKITRQNQKCHLQTDTHQVCLSSLLQHSQGSMA*CTF 741 *N+R + Y RQ + LT *+ P E * F MG + QN K +T THQV SL H+ + A*CTF Subject 6765 *NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTF 6980
Range 13: 7154 to 7327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 34/58(59%) | 0/58(0%) | Plus/Plus |
Query 1 LRSGDPTSDDMSWFYIGATGHR*VWIIMQ*IAFSAAGDLGQNYPPIVVGVGHWVGAAF 174 L+S DPT +D WFYI AT HR IIMQ* AFSAA +LG+N+ I +GHW AAF Subject 7154 LKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAF 7327
Range 14: 7178 to 7345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 27/56(48%) | 0/56(0%) | Minus/Minus |
Query 25 KYDLLTKSSTNPMPNPNDNGGIILAQIPSC*KSNSLHDDPHLSMSCCTNVKPRHII 192 ++D L K ST+PMP P NG ++ AQ C*K LHD L +SC +NVKP I+ Subject 7178 RFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPIL 7345
Range 15: 7159 to 7344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 31/62(50%) | 0/62(0%) | Minus/Minus |
Query 6 NMTYLRKAAPTQCPTPTTMGG*FWPKSPAAEKAIHCMMIHTYLCPVAPM*NHDISSDVGSPD 191 ++T AA QCP+ +M F P S AAEKA +CM+I+ LC VA M*N +SS VGS D Subject 7159 DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLD 7344
Range 16: 7156 to 7323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 26/56(46%) | 0/56(0%) | Plus/Plus |
Query 3 EIRGSYVR*YVVVLHWCNRT*IGVDHHAVNCFFSSWGFGPKLSPHCRWGWALGWCC 170 EI+ S R +VLH C +T +D+HAV C FSS G K H + WALG CC Subject 7156 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCC 7323
Range 17: 7155 to 7322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 28/56(50%) | 0/56(0%) | Minus/Minus |
Query 2 QHQPNAQPQRQWGDNFGPNPQLLKKQFTA**STPIYVLLHQCKTTTYHRT*DPLIS 169 QH+PNAQ QW F P +LLK+ TA* S VL QCKT+ Y D LIS Subject 7155 QHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7322
Range 1: 6482 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 80/196(41%) | 0/196(0%) | Minus/Plus |
Query 350 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL 937 V +M+ +V L + F + ++VH+VPGSGK++LIRE + + AF+ G PD PN+ GRYIK G G ILDEYLS +GFD FSDP+QN AHF+ + RFG NT L S G++++S + DE+I + F ++EG +IC K D ++ +++LPC+VRG+TF+VVT + Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Range 2: 6251 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 38/63(60%) | 0/63(0%) | Minus/Plus |
Query 965 EMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI 1153 E NL+NCIDNYAIEVSYAY +GE + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I Subject 6251 ETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 3: 7109 to 7150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Plus |
Query 269 YIAATRHRKKLIIM 310 YIA TRH KK+ I+ Subject 7109 YIALTRHSKKIQIL 7150
Range 4: 6250 to 6420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 33/57(58%) | 0/57(0%) | Plus/Minus |
Query 984 EIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPIS 1154 E EH LT N TQL*CAS SSS +SP *A +TSIA*LSMQF RL +S Subject 6250 ETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVS 6420
Range 5: 6883 to 7065 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 26/61(43%) | 0/61(0%) | Plus/Minus |
Query 354 KVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPK 536 KVTTS V PRT QGSL S+ KS+ Q++ PS+S ++SS L+L L P+ Subject 6883 KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR 7065
Range 6: 6598 to 6828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 30/77(39%) | 0/77(0%) | Plus/Minus |
Query 591 K*ASLGTLTF*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK 821 K*A + F* GSE S P + +RYSSSM LP P M P+ G SG+P KA +++SLI+ Subject 6598 K*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR 6828
Range 7: 6251 to 6394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 23/48(48%) | 0/48(0%) | Plus/Minus |
Query 1010 ISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHF 1153 + N EPHTVVVC +F F L V I LNCI++NA+L+V F Subject 6251 VLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNAILEVVCF 6394
Range 8: 6246 to 6380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 22/45(49%) | 0/45(0%) | Plus/Minus |
Query 1024 TAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHE 1158 T+HSCSV LHSS T P +H PQLH+ QC+S G F + Subject 6246 TSHSCSVHPFLLHSSTWKVTPPWSKHMKPQLHNCQCNSGGCLFQQ 6380
Range 9: 6246 to 6419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 28/58(48%) | 0/58(0%) | Minus/Plus |
Query 985 LVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEISTR*GAQF 1158 L+K T R AL MQLR+ M T W S *+K+K HTTTV GS L T * F Subject 6246 LLKQTTSRIALTIMQLRFHMLTPWGSHFPST*VKKKWMHTTTV*GSLLSTPTF*NVLF 6419
Range 1: 6662 to 7129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 64/156(41%) | 0/156(0%) | Minus/Plus |
Query 473 VVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL 940 +V+IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN AHFI + RFG T + L + G+N+ S + D V + F L Subject 6662 LVLIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL 7129
Range 2: 6403 to 6585 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 33/61(54%) | 0/61(0%) | Minus/Plus |
Query 974 REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 1156 RE NLENCIDNYAIEVS AY++GE ++ E++AHYNCVRF++ + H ++ +I LF Subject 6403 RETRNLENCIDNYAIEVSCAYQMGENLNLYLSPHEMDAHYNCVRFIILHNHLLKSNIKDLF 6585
Range 3: 7130 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 22/45(49%) | 0/45(0%) | Minus/Plus |
Query 341 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR 475 ++ EG +IC KE D A H+ ++KLPC+VRGATFD VT + + Subject 7130 VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 4: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 8/15(53%) | 0/15(0%) | Minus/Plus |
Query 269 FYIAATRHRKKLIIM 313 +Y+A TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 5: 7126 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 30/67(45%) | 0/67(0%) | Plus/Minus |
Query 279 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS 479 N LCLV+A ++ + KVT S VAPRT QG+L S C A KS+ S +QI PS S S Subject 7126 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS 7326
Range 6: 6781 to 6975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 26/65(40%) | 0/65(0%) | Plus/Minus |
Query 627 GSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK 821 GSEN KP DRYSS M LP P L+ +P SGTP V A L + + IK Subject 6781 GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTASILWFLIKACFIK 6975
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6667 to 7134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 64/156(41%) | 0/156(0%) | Minus/Plus |
Query 473 VVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL 940 V +IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN AHFI + RFG T + L G+N+ S + D V + F+L Subject 6667 VNLIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL 7134
Range 2: 6400 to 6582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 35/61(57%) | 0/61(0%) | Minus/Plus |
Query 974 REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 1156 RE NLENCIDNYAIEVS AY++GE ++ +EV+AHYNCVRF+V++ H ++ +I LF Subject 6400 RETRNLENCIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF 6582
Range 3: 7135 to 7269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 20/45(44%) | 0/45(0%) | Minus/Plus |
Query 341 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR 475 +D EGV+IC + D H+ ++KLPC+VRGAT+D+VT + + Subject 7135 VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK 7269
Range 4: 6399 to 6548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 31/50(62%) | 0/50(0%) | Plus/Minus |
Query 1008 LFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISR 1157 L T RTQL*CASTS SP L*A +TSIA*LSMQFSR +SR Subject 6399 LCCTMKRTQL*CASTS*GDRYKFKFSPIL*AQETSIA*LSMQFSRFLVSR 6548
Range 5: 7131 to 7331 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 31/67(46%) | 0/67(0%) | Plus/Minus |
Query 279 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS 479 N LCLV A L+S VT S VAP T QGSL S LC KS+ +QI TPS S S Subject 7131 NLVLCLVKATKRSGLTSSSRGFS*INVTMSYVAPLTWQGSLYSTLCHLRKSSTLSSRQIITPSGSTS 7331
Range 6: 6816 to 6989 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 25/58(43%) | 0/58(0%) | Plus/Minus |
Query 618 F*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKL 791 F*YGSE KP DRYSS + P P LM +P SGTP V A L Subject 6816 F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML 6989
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6702 to 7166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 64/155(41%) | 0/155(0%) | Minus/Plus |
Query 473 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVSDISGFDVLFSDPYQNVSVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL 937 V IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN AHFI + RFG T + L G+N+ S + D V + F+L Subject 6702 VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL 7166
Range 2: 6399 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 35/62(56%) | 0/62(0%) | Minus/Plus |
Query 971 REMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 1156 RE NLENCIDNYAIEVS AY++GE + +EV+AHYNCVRF+V++ H ++ +I LF+ Subject 6399 RETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK 6584
Range 3: 7167 to 7301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 20/45(44%) | 0/45(0%) | Minus/Plus |
Query 341 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR 475 ++ EGV+IC K D H+ ++K PC+VRGATFD+VT + + Subject 7167 IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK 7301
Range 4: 7163 to 7285 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 23/41(56%) | 0/41(0%) | Plus/Minus |
Query 357 VTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS 479 VT S VAPRT QG+L S LC KS+ +QI TPS S S Subject 7163 VTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS 7285
Range 5: 6818 to 7051 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 30/78(38%) | 0/78(0%) | Plus/Minus |
Query 588 MK*ASLGTLTF*YGSENNTSKPEMSLTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK 821 MK*A + F GSE P D+YSS M LP P L+Y+P L SGTP V A L + + IK Subject 6818 MK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASILLFRIKACFIK 7051
Nucleotide Sequence (396 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
268.2 | 1261.7 | 42% | 2.613e-71 | 71% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7510 to 7890 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.2 bits(579) | 0.0 | 114/127(90%) | 0/127(0%) | Minus/Plus |
Query 5 HSYMYCLFGILVLVGIAIAIQILAHVDNSSGSHQGCFIRATGESILIENCGPSEALASTVREVLGGLKALGISHITEEIDYRC*IG*MASQVGKLPGESNEAFEARLKSLELARAQKQPEGPNTPNT 385 HSYMYCLFGILVLVGI IAIQILAHVD+SSG+HQGCFIRATGESILIENCGPSEALASTV+EVLGGLKALG+S EEIDY C*IG*MASQ+GKLPGESNEAFEARLKSLELARAQKQPEG N P T Subject 7510 HSYMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPT 7890
Range 2: 7506 to 7883 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.6 bits(521) | 0.0 | 108/126(86%) | 0/126(0%) | Plus/Minus |
Query 12 GVFGPSGCF*ALANSSDFSRASNASFDSPGSLPT*LAI*PI*QR*SISSVIWLIPKAFKPPNTSLTVDARASLGPQFSIKIDSPVALIKQPW*LPLLLST*ARIWMAIAIPTKTRIPNRQYMYECN 389 G PSGCF*ALANSSDFSRAS ASFDSPGS P *LAI PI*Q *SISS L PKAFKPP+TS TVDARASLGPQFSIKIDSPVAL+KQPW LPLLLST*ARIWMAI IPTKTRIPNRQYMYEC+ Subject 7506 GALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQYMYECD 7883
Range 3: 7503 to 7871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 100/123(81%) | 0/123(0%) | Minus/Plus |
Query 24 VIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLYQGHWRVYFD*KLWPKRGPCINSEGGVGRFEGFRN*PYY*RXXXXXXXXXNGESGW*APRRIK*GI*SPAEITGVG*SSKAARR 392 +IAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQ PRLL+ GHWRV FD*KL PK GPCI+ EGG GRFEGFR *P *RN*LSLLNWLNG+S W PR IK*G *SPA+I GV *SSKAA R Subject 7503 LIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGR 7871
Range 4: 7505 to 7870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.3 bits(446) | 0.0 | 100/122(82%) | 0/122(0%) | Plus/Minus |
Query 25 LLAAFEL*PTPVISAGLQMPHLIRRGAYQPDSPXXXXXXXXXXXXXYG*FLKPSNLPTPPSLLMQGPRLGHNFQSK*TLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAI 390 L AAFEL* TP I AGLQ PHLI RG Q D PF+QFNNDNQFLQ +G* LKPSNLP PPS MQGP LG +FQSK TLQWP**SNLG CHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAI Subject 7505 LPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAI 7870
Range 5: 7504 to 7827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 83/108(77%) | 0/108(0%) | Plus/Minus |
Query 68 PGFKCLI*FAGEXXXXXXXXXXXXXIINFFSNMANS*SLQTSQHLPHC*CKGLAWATIFNQNRLSSGPDKATLVTATTVVYMSKDLDGNCNSYQDQNSKQTIHV*MQL 391 PGFK LI*F GE NLT H NLT IINFF++ AN *SLQTSQHL H CKGL WA +FNQN LSSGP++ATLV ATT VYMSKDLDGN NSYQDQNSKQTIHV*M+L Subject 7504 PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRL 7827
Range 6: 7505 to 7585 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 25/27(93%) | 0/27(0%) | Minus/Plus |
Query 310 NCIHTCIVCLEFWSW*ELQLPSKSLLM 390 N IHTCIVCLEFWSW*EL LPSKSLLM Subject 7505 NRIHTCIVCLEFWSW*EL*LPSKSLLM 7585