Queries
Nucleotide Sequence (1228 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
151.3 | 391.8 | 23% | 1.228e-57 | 30% | GU108589.1 |
Alignments
Grapevine associated chrysovirus 2 isolate Ctg208 putative capsid protein gene, partial cds
Sequence ID: GU108589.1 Length: 945 Number of Matches: 7
Range 1: 244 to 600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.3 bits(327) | 0.0 | 61/119(51%) | 0/119(0%) | Plus/Plus |
Query 38 DNKHQQTLIQELSNSGVSIEVDDVPRSMFMMEGTCIHANYKRGARKRKWTKHFGDKTVMSDNLHSIERKKPGRRINQKGSTGCTSNRSSVVSPIRGMKSKRENVDDRADEIRDTGADEP 394 DN+H QT IQELS SGV ++ +VP+S F++EGTCIH N +R ++ +KWTK++G+KT + NL + + + RR + STG TSNRSSVVSP+RGM+ RE VD+ D I +TG +P Subject 244 DNEHAQTFIQELSLSGVQVQAFEVPKSSFVVEGTCIHINRRRTSKHQKWTKYYGEKTTSTGNLPTPDLVRAKRRTLNRSSTGYTSNRSSVVSPLRGMRQARETVDEMVDNIEETGTVDP 600
Range 2: 604 to 867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(197) | 0.0 | 40/88(45%) | 0/88(0%) | Plus/Plus |
Query 401 TFRAKPIEQVLAEEATGRQVAYAAVTPNIMRDEEKERALEAAANVMGGDDLDYFNKLVDRNSLEYVPVVWSKADASEETQFFLIGLNV 664 T R KPIEQVLAEEATGR +V PN+ R + E AL AA VM G+D +YF+ L+++ +L+ VP +W+K ++ T +L+ L++ Subject 604 TNRIKPIEQVLAEEATGRDTRPVSVKPNLRRRPDTEVALSAAQKVMDGEDFEYFHSLIEKTTLKNVPGLWTKPTNNKGTWAYLLTLSL 867
Range 3: 886 to 945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.3 bits(47) | 0.0 | 6/20(30%) | 0/20(0%) | Plus/Plus |
Query 689 WKLDMQEWAVDHGMGLSLAK 748 W+ D++ WA++H + L + Subject 886 WRRDIKVWAIEHDLERQLIR 945
Range 4: 384 to 533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 23/50(46%) | 0/50(0%) | Minus/Minus |
Query 178 IPLMGETTDDLLDVQPVLPFWLIRRPGFFRSIEWRLSDITVLSPKCFVHF 327 IP G+TTDDLLDV PVL + + R +S +L V SP VHF Subject 384 IPRSGDTTDDLLDV*PVLLLFNVLRFARTKSGVGKLPVEVVFSP*YLVHF 533
Range 5: 618 to 683 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 13/22(59%) | 0/22(0%) | Minus/Minus |
Query 415 GVTAAYATCLPVASSANTCSIG 480 G+T PVASSA+TCSIG Subject 618 GLTDTGLVSRPVASSASTCSIG 683
Nucleotide Sequence (376 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
52.6 | 52.6 | 18% | 2.636e-05 | 30% | GU108589.1 | |
48.5 | 48.5 | 13% | 0.0004403 | 40% | AJ781398.1 |
Alignments
Grapevine associated chrysovirus 2 isolate Ctg208 putative capsid protein gene, partial cds
Sequence ID: GU108589.1 Length: 945 Number of Matches: 1
Range 1: 169 to 369 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.6 bits(110) | 0.0 | 20/67(30%) | 0/67(0%) | Plus/Plus |
Query 11 CDRTKTGNKSGIVNVLKNGKSDKYQINPYKDMLMDEIERGGIDLSQTDVPDSSFIIEGVCIYKSRKR 211 C G + G++ + GK D N + + E+ G+ + +VP SSF++EG CI+ +R+R Subject 169 CRTAGFGVERGLLQTMLQGKGDLTSDNEHAQTFIQELSLSGVQVQAFEVPKSSFVVEGTCIHINRRR 369
Cherry chlorotic rusty spot associated chrysovirus CP gene for putative coat protein, segment 2, genomic RNA
Sequence ID: AJ781398.1 Length: 3125 Number of Matches: 1