Nucleotide Sequence (462 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds
Range 1: 4126 to 4563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 50/146(34%) | 0/146(0%) | Minus/Plus |
Query 5 VLDCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSK 442 V D Y IK +HR VGGISE+K S + LI S + I LPGV +Y+ + +L++ ++ R+ ATY+AV K+R + + R + + +R ++K HK NYGKA + GF ++VL + +LN S+ Subject 4126 VEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVLGREMPDATITTILNTSQ 4563
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 4077 to 4511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 53/145(37%) | 0/145(0%) | Minus/Plus |
Query 2 DCYRIKTSHRCVGGISEDKRSDVKWLIRSSGFRKGATQIGVLPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSKN 436 D Y I+T+HR VGGI+ED + V IR+S T LPGV Y+R++K L+LE P+ +RI AT +AV + + V + N++RY + RAL++ + + T+ +GKA +TGF+ DVL + + L++ ++N Subject 4077 DLYDIRTAHRVVGGIAEDVSARVDKFIRTSSESIETTLPDTLPGVDAYARLLKKVLELEVPVSVVSTRIRNATLNAVQLTRKTVTVEKTLNVQRYMVYRALYRAYADVTNNPMFGKAMLTGFIFDVLTQNAQLSAVAQLVSSAQN 4511
Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 4235 to 4546 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 41/104(39%) | 0/104(0%) | Minus/Plus |
Query 2 LPGVVDYSRMVKASLQLERPLQDFISRIMRATYDAVIPKERNINVSRNGNIKRYEILRALFKVHKEETDIVNYGKAKMTGFLMDVLNGANKSGPLLHLLNGSKN 313 LPG+ Y+ + ASL L R + R+ +AT +AV + I+V N ++KR +LRAL+K + + D +GKAKMTGF++DVL + K L L GS++ Subject 4235 LPGLDSYADELIASLGLSRHRKKVRERVQQATLNAVQLVRKAISVVSNVDMKRSRVLRALYKSYADVADSPMFGKAKMTGFVIDVLANSTKLRTLSMKLRGSQD 4546
Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77