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Queries

Nucleotide Sequence (894 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
90
180
270
360
450
540
630
720
810
894

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
692.5 3850.5 30% 0 87% NC_004667
177.9 619.5 23% 4.217e-79 33% NC_022072
114.2 165.3 17% 1.697e-24 38% NC_003604
128.0 204.8 23% 2.44e-36 23% NC_016509
85.8 217.9 12% 1.258e-24 46% NC_011702

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 10

Range 1: 4905 to 5768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
692.5 bits(1505) 0.0 284/288(99%) 0/288(0%) Plus/Plus
Query       30  SGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY  893
                SGWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY
Subject   4905  SGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY  5768

Range 2: 4903 to 5769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
649.4 bits(1411) 0.0 283/289(98%) 0/289(0%) Plus/Plus
Query       28  YQGGLVS*RIS*RQLSTQASLTIV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TLSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRT  894
                +QGGLV *RIS*RQLSTQAS T V*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*T STKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRT
Subject   4903  HQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRT  5769

Range 3: 4901 to 5767 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
645.8 bits(1403) 0.0 284/289(98%) 0/289(0%) Minus/Minus
Query       26  YGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHHIEYVDXXXXXXXXXSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDK  892
                YGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SG RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSS+EFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHL+EKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR RGHPD+
Subject   4901  YGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDE  5767

Range 4: 5334 to 5768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
356.2 bits(771) 0.0 144/145(99%) 0/145(0%) Minus/Minus
Query      459  VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST  893
                VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST
Subject   5334  VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST  5768

Range 5: 4914 to 5291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.9 bits(622) 0.0 121/126(96%) 0/126(0%) Minus/Minus
Query       39  IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTR  416
                IRHAAG*LQHPAYTKDAPSCPERQTDAPFVD VY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPAL+REVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*T+V+DAWVLNCR*DIL* TR
Subject   4914  IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTR  5291

Range 6: 5095 to 5769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
508.8 bits(1104) 0.0 223/225(99%) 0/225(0%) Minus/Minus
Query      220  RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV*EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR*SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT  894
                RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT
Subject   5095  RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT  5769

Range 7: 4888 to 5049 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 47/54(87%) 0/54(0%) Minus/Minus
Query       13  GYLMDSTPRHQRGMVRLHPSCTSALNNGQRRLGT*LPLRYPLGHEATLINAQTH  174
                GYLMDSTPRHQRGMVRLHPSCTSALN+G+RRLGT*LPLRYPLGHEATL+    H
Subject   4888  GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMKHGYH  5049

Range 8: 4901 to 5356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
355.7 bits(770) 0.0 150/152(99%) 0/152(0%) Plus/Plus
Query       26  FIRVASCPRGYLNGN*VPKRL*PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLYRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT  481
                FIRVASCPRGYLNGN*VPKRL PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKL+RRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT
Subject   4901  FIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT  5356

Range 9: 5408 to 5650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 81/81(100%) 0/81(0%) Plus/Plus
Query      533  EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC  775
                EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC
Subject   5408  EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC  5650

Range 10: 5702 to 5767 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 22/22(100%) 0/22(0%) Plus/Plus
Query      827  QVGHRSHFSFNTRRLACERPTV  892
                QVGHRSHFSFNTRRLACERPTV
Subject   5702  QVGHRSHFSFNTRRLACERPTV  5767

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 6

Range 1: 6434 to 6832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 70/133(53%) 0/133(0%) Plus/Plus
Query      495  KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY  893
                K  SE + R  +  STY++W EQD+V KC+WL+AD+P++AL+P    M FE V T T+EDA +EYLKY AIGIER Y A +    IAV  A+GVLK P Q YE LPG   YK   + ++H T+DGLR+ D+PY
Subject   6434  KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPY  6832

Range 2: 5948 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.9 bits(312) 0.0 60/110(55%) 0/110(0%) Plus/Plus
Query       33  GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRAT  362
                GWP VL++I+    Y   FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F  +C+         VAS D F+M  GFQR + H+V S  EGRISLTFR+T
Subject   5948  GWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST  6277

Range 3: 6001 to 6276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 48/92(52%) 0/92(0%) Minus/Minus
Query       86  VALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSK  361
                V LNVKL+ PS  E T C  +L*KP  I   S EAT         LH + K A P   TV IGLS G*H S SAWN   PP  Y  TKQWSK
Subject   6001  VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK  6276

Range 4: 6496 to 6768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 49/91(54%) 0/91(0%) Minus/Minus
Query      557  L*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCS  829
                L*  KPG+ S*   G F TP A +TAI L   NALY LS+PIA YF+YS  ASS V V T S  I    G RA  G SA + SH +T SCS
Subject   6496  L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCS  6768

Range 5: 6446 to 6832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 42/129(33%) 0/129(0%) Minus/Minus
Query      507  VR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSL  893
                +R ++  QA+L  + N +   LV+ +AR   ++L R  Q+TF  S GN++   +R V PLN    +LQVL   I   P  +  K H      KS + IIS +P+ L + +L  P  +   P   P   L
Subject   6446  IRYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL  6832

Range 6: 5963 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 35/105(33%) 0/105(0%) Minus/Minus
Query       48  SCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*  362
                S PE QTD+      + M V PLK   H K + RS+       T+  L  E+C+   + R   V+  +A  +ISVE Y +T+ +LL+  MV+   V     D++*
Subject   5963  SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV*  6277

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 2

Range 1: 1959 to 2291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 45/111(41%) 0/111(0%) Plus/Plus
Query       24  RLSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  356
                R  GW   L ++   +     +DHCL+Q+Y  GG + FHADDE CY     ++TVNL G A F +K  + GK+    +  GD ++M  G Q+TH H V S  +GR S+T R
Subject   1959  RSLGWDEALNELTQELGLDDSYDHCLIQRYTAGGSIGFHADDEPCYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGMQQTHKHRVTSHTDGRCSITLR  2291

Range 2: 2030 to 2284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 32/85(38%) 0/85(0%) Minus/Minus
Query       95  VKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQ  349
                V L RPS  E T C  V   P  I   SP  +      P       K A P +LTV       *H SSSAWN   PP +Y   +Q
Subject   2030  VMLQRPSV*EVTLCL*VCCIPGPITYTSPSCSSFFSIFPD*FSFTSKVASPCKLTVTTEPPGR*HGSSSAWNPILPPAVYLWIRQ  2284

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 5393 to 5716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 48/108(44%) 0/108(0%) Plus/Plus
Query       33  GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  356
                GW + L+++   +K    +DHCL+QKY+ G  + FHADDE+CY S   ++TVNL G+A F ++  K G+++   +  GD F+M  G QR   HSV S+DEGR+S+T R
Subject   5393  GWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR  5716

Range 2: 6164 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 15/38(39%) 0/38(0%) Plus/Plus
Query      780  KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPY  893
                K P  VYE+LPG  VY +   ++ ++ +DG  + DL Y
Subject   6164  KFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEY  6277

Range 3: 5867 to 6157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 22/97(23%) 0/97(0%) Plus/Plus
Query      486  SGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV  776
                S     S  + R+   +ST     E   + K  W+  ++PV+ ++     +  + +KT  +E   +E++ YLA      +  L  AR++   T + V
Subject   5867  SSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV  6157

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 5

Range 1: 5203 to 5355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 31/51(61%) 0/51(0%) Plus/Plus
Query       81  SVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKG  233
                S+FDHCL+QKY  G G+PFH D+E  YP  NPILT++L G+  FSIKC  G
Subject   5203  SMFDHCLIQKYNRGAGIPFHKDNEPVYPIGNPILTIHLSGEGMFSIKCGTG  5355

Range 2: 5386 to 5448 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 15/21(71%) 0/21(0%) Plus/Plus
Query      270  YFLMPCGFQRTHLHSVNSIDE  332
                +FLMPCGFQ+THLHSV    E
Subject   5386  WFLMPCGFQKTHLHSVTCSSE  5448

Range 3: 5449 to 5484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 8/12(67%) 0/12(0%) Plus/Plus
Query      336  RISLTFRATRRV  371
                R+SLTFRAT+++
Subject   5449  RVSLTFRATQQL  5484

Range 4: 5217 to 5354 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 21/46(46%) 0/46(0%) Minus/Minus
Query       95  PFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQ  232
                P  H IE    P +  VKIGL  G*  S S   G P P+LYF  +Q
Subject   5217  PVPHFIENIPSPLKWIVKIGLPIG*TGSLSL*KGIPAPLLYF*MRQ  5354

Range 5: 5391 to 5432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/14(64%) 0/14(0%) Minus/Minus
Query      275  TECKCVL*KPQGIR  316
                TE +CV  KPQGI+
Subject   5391  TE*RCVFWKPQGIK  5432

Nucleotide Sequence (300 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
30
60
90
120
150
180
210
240
270
300

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
230.2 1300.4 44% 4.632e-60 99% NC_004667
138.5 221.6 49% 1.789e-32 58% NC_022072
94.5 149.2 44% 3.122e-19 46% NC_029783
79.9 147.4 40% 8.096e-15 47% NC_001836
80.3 135.5 21% 5.893e-15 58% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 10660 to 10956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 98/99(99%) 0/99(0%) Minus/Plus
Query        3  Y*RFLILGEGLSSSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNW  299
                Y*RFLILGEGLS+SHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNW
Subject  10660  Y*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNW  10956

Range 2: 10660 to 10956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.8 bits(493) 0.0 99/99(100%) 0/99(0%) Plus/Minus
Query        3  PVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLI  299
                PVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLI
Subject  10660  PVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLI  10956

Range 3: 10659 to 10958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.9 bits(491) 0.0 99/100(99%) 0/100(0%) Minus/Plus
Query        1  LLAVFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELD  300
                LLAVFDFGGGTF VSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELD
Subject  10659  LLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELD  10958

Range 4: 10659 to 10958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.6 bits(486) 0.0 99/100(99%) 0/100(0%) Plus/Minus
Query        1  VQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DDESPSPKIKNR**  300
                VQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*D ESPSPKIKNR**
Subject  10659  VQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR**  10958

Range 5: 10661 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 82/83(99%) 0/83(0%) Plus/Minus
Query       50  GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETTKVPPPKSKTAN  298
                GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNET+KVPPPKSKTAN
Subject  10661  GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTAN  10909

Range 6: 10661 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.2 bits(411) 0.0 83/83(100%) 0/83(0%) Minus/Plus
Query       50  ISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP  298
                ISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP
Subject  10661  ISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP  10909

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 11627 to 11923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 57/99(58%) 0/99(0%) Minus/Plus
Query        4  LLAVFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDEL  300
                L+AVFDFGGGTF VSFVKKKG+IL V++S GDNFLGGRDID A+   +K+K+ G     KL  FVS++KED+SN+ ++  H++P   G E+V LT  EL
Subject  11627  LIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAEL  11923

Range 2: 11632 to 11847 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 42/72(58%) 0/72(0%) Plus/Minus
Query       80  LDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETTKVPPPKSKTA  295
                LD SS I DT   +L     P  F L     A SISLPPKKLSP E  T  I PFFLT +T+KVPPPKSKTA
Subject  11632  LDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTA  11847

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 10865 to 11119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 39/85(46%) 0/85(0%) Minus/Plus
Query       37  VFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  291
                VFDFGGGTF +S + K+G +L VI + GDN+LGGRD+D  I++ I   ++     +   I VS MKE +S+  A T+ +IP+E G
Subject  10865  VFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG  11119

Range 2: 10864 to 11001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 25/46(54%) 0/46(0%) Plus/Minus
Query      155  LITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETTKVPPPKSKT  292
                LI   I  S SLPP+ LSP+  +T + FP F   E +KVPPPKSKT
Subject  10864  LIVFIIFASTSLPPR*LSPSAPITPNTFPLFNIIEMSKVPPPKSKT  11001

Little cherry virus 1, complete genome

Sequence ID: Length: 16934 Number of Matches: 2

Range 1: 9179 to 9394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 34/72(47%) 0/72(0%) Minus/Plus
Query       76  VFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNN  291
                VFDFGGGTF VS++KK G I+ +I + GD FLGGRDID+A+ E I QK      D  +     ++   +S N
Subject   9179  VFDFGGGTFDVSYIKKHGKIVSIIDTAGDLFLGGRDIDKALAEFISQKTGHSCDDLFINHLKETVTPGVSKN  9394

Range 2: 9178 to 9324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 28/49(57%) 0/49(0%) Plus/Minus
Query      146  IFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETTKVPPPKSKT  292
                +FC I S  ALS+SLPP+  SP   +  +IFP FL  +T+KVPPPKSKT
Subject   9178  VFCEINSAKALSMSLPPRNKSPAVSIMLTIFPCFLIYDTSKVPPPKSKT  9324

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 10444 to 10590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 30/49(61%) 0/49(0%) Minus/Plus
Query      148  AVFDFGGGTFVVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK  294
                AVFDFGGGT  +SF+ +  N++ V+FS GDNFLGGRDIDRAIV+ ++++
Subject  10444  AVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE  10590

Range 2: 10443 to 10571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 25/43(58%) 0/43(0%) Plus/Minus
Query      167  TIALSISLPPKKLSPTEKMTHSIFPFFLTNETTKVPPPKSKTA  295
                TIALS+S PP+KLSP E  T +       N+ +KVPPPKSKTA
Subject  10443  TIALSMSRPPRKLSPFENSTLTTLLNLDMNDISKVPPPKSKTA  10571

Nucleotide Sequence (369 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
369

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
269.1 1342.5 30% 1.236e-71 81% NC_004667
67.0 67.0 24% 8.341e-11 33% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 960 to 1304 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
269.1 bits(581) 0.0 103/115(90%) 0/115(0%) Plus/Plus
Query        7  IARGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMHMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPRAPNT  351
                I RGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTT+GWCWFNNERLRGEIYRRRCFSSSFS+GFLMH+GFRSLK +RFAGTNILH+PSLNEERTFGWK  DVYLP  P T
Subject    960  IVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFSIGFLMHLGFRSLKVIRFAGTNILHMPSLNEERTFGWKGGDVYLPNVPKT  1304

Range 2: 960 to 1298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 92/113(81%) 0/113(0%) Minus/Minus
Query        7  WCPGEINICALPPKGALFIERWYV*YVRARKPDGFQRSKAHVHQETYRKGR*EATASINFSPQPFVIKPTPPSGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPSPRN  345
                W  GEI++ ALPPKG LFIE W+V*YVRARKP+   RSKA VHQETYRKGR*EAT S+NFSPQP ++KPTPP GGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSP+P N
Subject    960  WDIGEIDVSALPPKGTLFIE*WHV*YVRARKPNDL*RSKAKVHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPTPHN  1298

Range 3: 959 to 1309 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 107/117(91%) 0/117(0%) Minus/Minus
Query        6  LGVFGALGR*TSALFHPKVRSSLSDGMCSMFVPANLTAFNDLKPMCIKKPTEKEDEKQRRXXXXXXXXXXLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRAI  356
                + VFG LGR*TS  FHPKVRSSLSDGMCSMFVPANL  FNDLKP CIKKP EKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPR I
Subject    959  IAVFGTLGR*TSPPFHPKVRSSLSDGMCSMFVPANLMTFNDLKPRCIKKPIEKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTI  1309

Range 4: 958 to 1299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
213.7 bits(460) 0.0 94/114(82%) 0/114(0%) Plus/Plus
Query        5  LLRGEGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPEGGVGLITKG*GEKFIDAVASHLPFR*VS*CTWALDR*KPSGLRARTYYTYHRSMKSAPLGGRAQMFISPGHQ  346
                LL G GLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPP+GGVGL  +G*GEKF D VASHLPFR*VS*CT ALDR*+  GLRARTYYT H SMKS PLGGRA+  ISP  Q
Subject    958  LLCGVGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CTLALDR*RSLGLRARTYYTCHHSMKSVPLGGRAETSISPMSQ  1299

Range 5: 959 to 1303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 94/115(82%) 0/115(0%) Plus/Plus
Query        6  YCAGKGYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV**RKAEGRNL*TPLLLIFLFGRFLDAHGL*IVESRQVCGHEHTTHTIAQ*RAHLWVEERRCLSPQGTKH  350
                YCAG GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV*  +AEGRNL T LLLIFLF RFLDA  L*IV+   VCGHEHTTH I Q*RA+LWVE RR LSPQ  K+
Subject    959  YCAG*GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLFDRFLDAPWL*IVKGH*VCGHEHTTHAITQ*RAYLWVEGRRRLSPQCPKN  1303

Range 6: 958 to 1290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 93/111(84%) 0/111(0%) Minus/Minus
Query        5  WGDKHLRSSTQRCALH*AMVCVVCSCPQT*RLSTI*SPCASRNLPKRKMRSNGVYKFLPSAFRY*TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYXXXXXXXXPFPAQ*  337
                WGD+ LR STQR ALH* M CVVCSCPQT*   TI*S  ASRNL KRKMRSN V KFLPSA   *TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYSR*SPRS*P+PAQ*
Subject    958  WGDRRLRPSTQRYALH*VMACVVCSCPQT**PLTI*SQGASRNLSKRKMRSNDVCKFLPSASHC*TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYSR*SPRS*PYPAQ*  1290

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 1697 to 1957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 29/87(33%) 0/87(0%) Plus/Plus
Query       25  TIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMHMGFRSLKAVRFAGTNILHIPS  285
                TI +F+    P  +V LP +  +  R R  V  + GWCW+N  RLR  +  R    S ++   +M MG R ++ VR A     H+ S
Subject   1697  TITEFLFGVGPDDEVQLPDMAFYCPRLRRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYTAKEVMDMGLRKVRMVRTAKVGFYHVVS  1957

Nucleotide Sequence (315 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
315

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
240.3 1297.2 16% 4.601e-63 43% NC_004667
132.6 240.6 14% 1.195e-30 38% NC_022072
69.8 127.2 20% 9.429e-12 32% NC_016509
61.6 61.6 31% 2.866e-09 31% NC_029783
47.3 94.2 19% 5.411e-05 28% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 15262 to 15564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.3 bits(518) 0.0 98/101(97%) 0/101(0%) Minus/Plus
Query        6  GEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFYSHHHYSTYREENSASVYCPS*ARRPEEVHSLL  308
                GEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVF SHH+YSTYREENSASVYCPS*ARRPEEVHS+L
Subject  15262  GEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVL  15564

Range 2: 15263 to 15568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.3 bits(494) 0.0 95/102(93%) 0/102(0%) Plus/Minus
Query        2  DSVGSEPLRDAVLS*GSIRWLNFLLYK*SNGGVSKIPHEGSHSVGWRRIVFPS*YSFPYFRIT*VDFLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIP  307
                ++V SEPLRDAVLS*GS RWLNFLLYK*SN GVSKIPHEGSHSVGWRR VFPS*YSFPYFRIT*VD LLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIP
Subject  15263  EAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIP  15568

Range 3: 15263 to 15562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.1 bits(485) 0.0 96/100(96%) 0/100(0%) Minus/Plus
Query        8  GNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  307
                GNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPY
Subject  15263  GNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPY  15562

Range 4: 15262 to 15564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(452) 0.0 95/101(94%) 0/101(0%) Plus/Minus
Query        6  Q*GVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP  308
                Q GVNLFGTPCLARAV+AG*IFFSISRV+VV* KYLMKDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP
Subject  15262  QYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP  15564

Range 5: 15264 to 15569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 96/102(94%) 0/102(0%) Minus/Plus
Query        1  GI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKRKST*VIRK*GKLY*EGNTMRLQPTLCDPS*GIXXXXXXXXX*RRKFSQRILP*LSTASRRGSLPTES  306
                GI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKR+ST*VIRK*GKLY*EGNT+RLQPTLCDPS*GILLTP LLYL*RRKFSQR+LP*LSTASRRGSL T S
Subject  15264  GI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTAS  15569

Range 6: 15423 to 15563 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 44/47(94%) 0/47(0%) Plus/Minus
Query        7  SRE*TSSGRRA*LGQYTLAEFSSL*VE*WWCE*NTS*RIAQCWLETH  147
                S E*TSSGRRA*LGQYTLAEFSSL*VE* WCE NTS*RIAQCWLETH
Subject  15423  STE*TSSGRRA*LGQYTLAEFSSL*VE**WCEQNTS*RIAQCWLETH  15563

Range 7: 15261 to 15299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query      271  VRKVVSWPLSYSP  309
                VRKVVSWPLSYSP
Subject  15261  VRKVVSWPLSYSP  15299

Range 8: 15336 to 15368 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 11/11(100%) 0/11(0%) Plus/Minus
Query      202  SFDLIRSPPYT  234
                SFDLIRSPPYT
Subject  15336  SFDLIRSPPYT  15368

Range 9: 13935 to 14060 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 18/42(43%) 0/42(0%) Minus/Plus
Query        8  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  133
                N VR ++ YFT T IT  +  K+      +A+HGVP +F PY
Subject  13935  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPY  14060

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 16159 to 16461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 54/101(53%) 0/101(0%) Minus/Plus
Query        8  EGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  310
                +GN +V +IQLF+LYSTVK+ ++   Y++   L  K+V LS+  VR AIL G  D S TN VR++MRY+ +T ++LL+  K+QPAYTA AKHGVPKRF P+
Subject  16159  KGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPF  16461

Range 2: 16161 to 16463 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 45/101(45%) 0/101(0%) Plus/Minus
Query        6  Q*GVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFP  308
                Q G NLFGTPCLA AV AG       R+  V   YL+  RT+LV + S  P +IA LT+  LK T F  + +  LY  L++   TV  S KS I  T  FP
Subject  16161  QNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFP  16463

Range 3: 14853 to 14978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 16/42(38%) 0/42(0%) Minus/Plus
Query        8  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  133
                N VR ++ +FT T +T ++  K+ P    +A+HGVP +F  Y
Subject  14853  NPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAY  14978

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 15096 to 15389 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 31/98(32%) 0/98(0%) Minus/Plus
Query        8  MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  301
                + + MIQ  + +ST  N+   +  +V+  L  +K  + ++E+R  I      +   N VR +MR+F+ TTI+L+    + P Y  +A+HGV  +F PY
Subject  15096  LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPY  15389

Range 2: 13685 to 13870 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 22/62(35%) 0/62(0%) Minus/Plus
Query        8  LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  193
                L+Y +V+ A++ G   ++  N +R + R F+ T + L++  K++P      +HGVPKRF PY
Subject  13685  LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPY  13870

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 15317 to 15607 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 30/97(31%) 0/97(0%) Minus/Plus
Query        8  IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  298
                ++A+IQ  V YSTV++  + D   V  +   +     Y++  + I   +     +N +R +MR+++ TTI+L+    I+P Y   A HGV K + PY
Subject  15317  LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPY  15607

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 13653 to 13943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 27/97(28%) 0/97(0%) Minus/Plus
Query        8  IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  298
                +V + Q+ V+  T  N    D       +  K+   +Y  VRE+I          N +R FMR  + + +  L    I+P    ++K GVP  F PY
Subject  13653  MVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPY  13943

Range 2: 8772 to 8954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 21/61(34%) 0/61(0%) Minus/Plus
Query        8  SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPY  190
                +Y+EV   I     +    N VR+F+R+ +   I L+I   I+P    +AK+G+P++F PY
Subject   8772  NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPY  8954

Nucleotide Sequence (501 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
51
102
153
204
255
306
357
408
459
501

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
346.6 1871.8 48% 9.424e-95 85% NC_004667
281.9 620.1 49% 2.648e-75 40% NC_022072
225.6 347.3 29% 2.47e-58 52% NC_016509
133.0 358.2 38% 1.593e-52 42% NC_029783
107.4 266.4 31% 4.47e-40 44% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 7642 to 8127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.6 bits(750) 0.0 161/162(99%) 0/162(0%) Minus/Plus
Query       16  NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK  501
                NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDP K
Subject   7642  NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLK  8127

Range 2: 7643 to 8119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
339.7 bits(735) 0.0 153/159(96%) 0/159(0%) Plus/Minus
Query       24  DREQKRDYPRLELKT*NKNKEQLG*ISLRQNQNYRSEPTYQYLTAAD*I*GYHHH*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSLFSRRYHTHHKRK*TKLLYQHQXXXXXXXXXXXXEHSEICRTY*YPVHRCSIAGCPPN  500
                DREQKRDYPRLELKT*NKN EQLG* SLRQNQNYRSEPTYQY TAAD*I*GYHH *LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSS FSRRYHTHHKRK*TKLLYQHQVSRVSTPPP S*EHSEICRTY*YPVHRCSIAGCPPN
Subject   7643  DREQKRDYPRLELKT*NKNMEQLG*KSLRQNQNYRSEPTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPPAS*EHSEICRTY*YPVHRCSIAGCPPN  8119

Range 3: 7644 to 8051 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.6 bits(630) 0.0 130/136(96%) 0/136(0%) Minus/Plus
Query       92  FGGHPAILHL*TGYQ*VRQISECSHETGGGVDTLDTWC**RSFVYFLLW*V**RRENNDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*W***PHI*SAAVRY*YVGSER*FWF*RKDI*P  499
                FGGHPAILHL*TGYQ*VRQISECSHE GGGVDTLDTWC**RSFVYFLLW*V**RREN+DEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS* ***P+I*SAAV Y*YVGSER*FWF*RKD *P
Subject   7644  FGGHPAILHL*TGYQ*VRQISECSHEAGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YVGSER*FWF*RKDF*P  8051

Range 4: 8033 to 8131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/33(85%) 0/33(0%) Minus/Plus
Query       12  T*RYLTKLLLIFVLSF*FKSRIVSFLFPIPPNT  110
                T*R+LTKLL IFVLSF*FKSRIVSFLFPI  N+
Subject   8033  T*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNS  8131

Range 5: 7642 to 8127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.5 bits(643) 0.0 153/162(94%) 0/162(0%) Plus/Minus
Query       16  FGGIGNKKETILDLN*KLRTKIRSSLVKYLYVKTKIIAQXXXXXXXXLPTKYEAXXXXXXXXXXXXSPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHCSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQI  501
                F  IGNKKETILDLN*KLRTKI SSLVK LYVKTKIIAQNRRINI RLPTKY+AIIT NYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRH SHDAIILTTKESRQNFSINTKCQEYQLLHL HESTLRFVVLTDIQFIGVVLPDVPQI
Subject   7642  FKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLLHESTLRFVVLTDIQFIGVVLPDVPQI  8127

Range 6: 7710 to 7931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 74/74(100%) 0/74(0%) Plus/Minus
Query      212  NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  433
                NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA
Subject   7710  NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  7931

Range 7: 7968 to 8126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 49/53(92%) 0/53(0%) Plus/Minus
Query       17  LEGSGTKKRLSST*TKNLEQK*GAAWLNIFTSKPKLSLRTDVSISNGCRLNMR  175
                L GSGTKKRLSST*TKNLEQK GAAWL IFTSKPKLSLRTDVSISNGCRLN+R
Subject   7968  LSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISNGCRLNIR  8126

Range 8: 7644 to 7670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 9/9(100%) 0/9(0%) Plus/Minus
Query      473  V*YCRMSPK  499
                V*YCRMSPK
Subject   7644  V*YCRMSPK  7670

Range 9: 7643 to 7930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
224.7 bits(484) 0.0 94/96(98%) 0/96(0%) Minus/Plus
Query      213  IWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSMIAS*EQ*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD  500
                IWGTSGNTTPMNWISVSTTNLRVLS*+RWRS*YS*HLVLIEKFCLLSFVVSMIAS*E+*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD
Subject   7643  IWGTSGNTTPMNWISVSTTNLRVLS*SRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD  7930

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 7

Range 1: 8706 to 9191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
281.9 bits(609) 0.0 130/162(80%) 0/162(0%) Minus/Plus
Query       16  NLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK  501
                +LGDIR Y  YELDISKYDKSQ++LMKQVEELILLTLGVD+EVL TFFCGEYDS+V   +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG +  Y+VVSGDDSLIFSR  LDIDTS LSDNFGFDVK+F QA PYFCSKFLVQ +  LFFVPDP K
Subject   8706  DLGDIRAYTCYELDISKYDKSQASLMKQVEELILLTLGVDKEVLDTFFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLK  9191

Range 2: 8777 to 8992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 50/72(69%) 0/72(0%) Plus/Minus
Query      215  PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  430
                PL+ TDNKV  T +FPN V APPLRL* PTD TNS     T LSYSPQK V KTSLSTP VK I+SSTCF+R
Subject   8777  PLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSPQKNVSKTSLSTPRVKRISSSTCFIR  8992

Range 3: 9032 to 9184 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 30/51(59%) 0/51(0%) Plus/Minus
Query       23  GSGTKKRLSST*TKNLEQK*GAAWLNIFTSKPKLSLRTDVSISNGCRLNMR  175
                GSGTK    S  T+N EQK*G A L  FTS PKLSL  +VSISN  R  +R
Subject   9032  GSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNSVREKIR  9184

Range 4: 8716 to 8778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 9/21(43%) 0/21(0%) Plus/Minus
Query      429  EHSEICRTY*YPVHRCSIAGC  491
                E  E CRTY  P+H      C
Subject   8716  ETLETCRTYLCPIHNTCTLLC  8778

Range 5: 8736 to 8984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 35/83(42%) 0/83(0%) Plus/Minus
Query      223  YYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHCSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFI  471
                ++ QQG +   +  P V TT +PL  +RQ   LR   H  +I TTKE   +  IN +  E +L HL H+  LR VVLT +QFI
Subject   8736  HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLRG*RHQTVIFTTKERV*DLLINPQS*ENKLFHLLHQRRLRLVVLTYVQFI  8984

Range 6: 8728 to 8862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 23/45(51%) 0/45(0%) Minus/Plus
Query      345  TTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSM  479
                T  MNW  VSTT+L+ L *+RW+S +S*   LI +    SFVV+M
Subject   8728  TRVMNWT*VSTTSLKRL**SRWKSLFS*LWGLIRRS*TRSFVVNM  8862

Range 7: 8888 to 8977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/30(40%) 0/30(0%) Minus/Plus
Query      230  GIGVVCRLSEAQWWC*HVVGK*FSLVHLVV  319
                G+ +V   SEA+ WC H+V +    ++LVV
Subject   8888  GVSLVGWESEAKRWCEHLVREHSGALYLVV  8977

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 8169 to 8651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.6 bits(486) 0.0 102/161(63%) 0/161(0%) Minus/Plus
Query       16  LGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK  498
                LGD+  YY YELDISKYDKSQ A MK VE  IL+ LGV   V+  FFCGEYDSVV     ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS+  L ID  +L ++FGFD+K+  Q APYFCSK+LV+  D  +F+PDP K
Subject   8169  LGDVSGYYVYELDISKYDKSQGACMKDVERRILIGLGVSESVVDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFK  8651

Range 2: 8234 to 8452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 38/73(52%) 0/73(0%) Plus/Minus
Query      215  PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  433
                P     NKV +TK+FPNHV APP     PTD T+SF  ++TT SYSPQKK   T   TP    I  ST FM A
Subject   8234  PFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTPRPIKIRLSTSFMHA  8452

Range 3: 8519 to 8650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 23/44(52%) 0/44(0%) Plus/Minus
Query       17  LEGSGTKKRLSST*TKNLEQK*GAAWLNIFTSKPKLSLRTDVSI  148
                L GSG K + S   TK  EQK*GA W     S PKLS R   SI
Subject   8519  LNGSGKK*Q*SGVLTKYFEQK*GAHWHVNLRSNPKLSSRILSSI  8650

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 5

Range 1: 8458 to 8700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 56/81(69%) 0/81(0%) Minus/Plus
Query      256  LGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN  498
                LGDI QYY YELDISKYDKSQ+ LMK  E  +L  LGV+ + L  FF GEYDS V    KEL LS+GSQRRSGGANTWLGN
Subject   8458  LGDISQYYCYELDISKYDKSQAGLMKDTERALLSMLGVESDTLDMFFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGN  8700

Range 2: 8749 to 8940 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 35/64(55%) 0/64(0%) Minus/Plus
Query       16  YSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPSK  207
                +  ++ SGDDSLIFS++ LD+DT+ LS  +GFDVK+ + + PYFCSK+ V+  D L FVPDP K
Subject   8749  FDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFK  8940

Range 3: 8526 to 8738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 32/71(45%) 0/71(0%) Plus/Minus
Query      218  LSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  430
                L + DN  +KT +FPNHV APPL  * P D  NS + + T  SYSP+K + + SLSTP++ +   S  F++
Subject   8526  LRSIDNSDNKTIVFPNHVFAPPLLR*LPIDKDNSLLCIETLESYSPEKNISRVSLSTPNILNNALSVSFIK  8738

Range 4: 8802 to 8939 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 21/46(46%) 0/46(0%) Plus/Minus
Query       17  LEGSGTKKRLSST*TKNLEQK*GAAWLNIFTSKPKLSLRTDVSISN  154
                L GSGTK++ S   TK  EQK*G       TS P   L+  VS S+
Subject   8802  LNGSGTKRKPSFVFTKYFEQK*GTDKSLSLTSNPYA*LKVVVSRSS  8939

Range 5: 8456 to 8512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 8/19(42%) 0/19(0%) Plus/Minus
Query      444  CRTY*YPVHRCSIAGCPPN  500
                CRT+ YP+H  +     PN
Subject   8456  CRTWIYPIHNNNTEIYRPN  8512

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 4

Range 1: 6256 to 6489 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 42/78(54%) 0/78(0%) Minus/Plus
Query      256  IRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN  489
                ++  +  E+DISK+DKSQ  L+KQ+EE++L  LGVD EVL+ ++  EY+SV  T  K L +SV +QRR+GG+NTWLGN
Subject   6256  VQNLFCSEVDISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGN  6489

Range 2: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 30/60(50%) 0/60(0%) Minus/Plus
Query       25  SYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPD  204
                +++  SGDDSL+ SR P+  D   LS   GFDVK    A PYFCSK+++  ED +F VPD
Subject   6541  TFVCFSGDDSLVLSRDPIYFDFFKLSLELGFDVKFTPVATPYFCSKYIINTEDRIFIVPD  6720

Range 3: 6315 to 6497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 27/61(44%) 0/61(0%) Plus/Minus
Query      248  TKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  430
                T + PNHV  PP+ L   T+       VL TLSYS      KTS STP  +S  SS CF++
Subject   6315  TIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKRRSTISSICFIK  6497

Range 4: 6576 to 6728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 23/51(45%) 0/51(0%) Plus/Minus
Query       17  LEGSGTKKRLSST*TKNLEQK*GAAWLNIFTSKPKLSLRTDVSISNGCRLN  169
                L+ SGT K LSS     L QK G A    FTSKP   L    S   G R N
Subject   6576  LKMSGTIKILSSVFIMYLLQKYGVATGVNFTSKPNSKLNLKKSKYIGSRDN  6728

Nucleotide Sequence (355 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
355

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
244.8 1307.7 45% 2.392e-64 96% NC_004667
51.5 51.5 11% 3.866e-06 46% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 16171 to 16491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
244.8 bits(528) 0.0 107/107(100%) 0/107(0%) Plus/Plus
Query       35  Y*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGF  355
                Y*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGF
Subject  16171  Y*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGF  16491

Range 2: 16185 to 16490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 102/102(100%) 0/102(0%) Minus/Minus
Query       49  KPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPL  354
                KPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPL
Subject  16185  KPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPL  16490

Range 3: 16167 to 16349 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.9 bits(310) 0.0 60/61(98%) 0/61(0%) Plus/Plus
Query       31  GILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*SCQSRLERTITWF*Y  213
                GILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS* CQSRLERTITWF*Y
Subject  16167  GILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y  16349

Range 4: 16389 to 16490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 34/34(100%) 0/34(0%) Plus/Plus
Query      253  SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL  354
                SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL
Subject  16389  SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL  16490

Range 5: 16162 to 16326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 53/55(96%) 0/55(0%) Minus/Minus
Query       26  VLSDFDNFKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISHS  190
                VLSDFDN KIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH+
Subject  16162  VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISHT  16326

Range 6: 16378 to 16491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 38/38(100%) 0/38(0%) Minus/Minus
Query      242  KAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL  355
                KAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL
Subject  16378  KAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL  16491

Range 7: 16322 to 16489 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 56/56(100%) 0/56(0%) Plus/Plus
Query      186  RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKA  353
                RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKA
Subject  16322  RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKA  16489

Range 8: 16166 to 16273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 36/36(100%) 0/36(0%) Plus/Plus
Query       30  WDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M  137
                WDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M
Subject  16166  WDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M  16273

Range 9: 16235 to 16489 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 84/85(99%) 0/85(0%) Minus/Minus
Query       99  SLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QL*DKIAERKQLHLNPG*SDDKT*V  353
                SLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*Q *DKIAERKQLHLNPG*SDDKT*V
Subject  16235  SLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V  16489

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 17046 to 17162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 18/39(46%) 0/39(0%) Plus/Plus
Query       22  CLSGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*  138
                C +G+  DL WE++     KG+D+LD  +L  +YPGFK*
Subject  17046  CWAGLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK*  17162

Nucleotide Sequence (445 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
45
90
135
180
225
270
315
360
405
445

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
345.2 1923.9 30% 2.089e-94 96% NC_004667
100.5 100.5 31% 9.388e-21 37% NC_022072
47.3 47.3 14% 9.396e-05 38% NC_016417
46.4 46.4 14% 0.0001773 37% NC_016081
45.1 45.1 14% 0.0004599 37% NC_016416

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 12706 to 13140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
345.2 bits(747) 0.0 145/145(100%) 0/145(0%) Plus/Plus
Query        9  EKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  443
                EKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE
Subject  12706  EKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  13140

Range 2: 12702 to 13142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.9 bits(729) 0.0 144/147(98%) 0/147(0%) Plus/Plus
Query        5  RGEVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*IL*RSHMSG*ATLRHSQEQLEDAELCRRYVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERK  445
                R EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*+L*RSHMSG*ATLRHSQEQLEDAELCRR VSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERK
Subject  12702  RREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERK  13142

Range 3: 12707 to 13141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
335.6 bits(726) 0.0 143/145(99%) 0/145(0%) Minus/Minus
Query       10  FRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTYRLHNSASSNCSCECRNVA*PDM*DRYSIYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTS  444
                FRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLT RLHNSASSNCSCECRNVA*PDM*DRYS YIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTS
Subject  12707  FRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTS  13141

Range 4: 12706 to 13140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.9 bits(718) 0.0 143/145(99%) 0/145(0%) Minus/Minus
Query        9  FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RTVYITQRLPIVPANAVMSPSQTCEIAIVST*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLL  443
                FVRLDIVYNASVICGVDRISHLRSYTISRVIR*R VYITQRLPIVPANAVMSPSQTCEIAIV T*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLL
Subject  12706  FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLL  13140

Range 5: 12705 to 13142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
313.6 bits(678) 0.0 146/146(100%) 0/146(0%) Minus/Minus
Query        8  FSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFS  445
                FSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFS
Subject  12705  FSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFS  13142

Range 6: 12893 to 13054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.2 bits(245) 0.0 52/54(96%) 0/54(0%) Plus/Plus
Query      196  KIVPLEYQKSAG*TLNVYYVDTIAISHVWLGDITAFAGTIGRR*VM*TVR*RMT  357
                KIVPLEYQKSAG*TLNVYYV TIAISHVWLGDITAFAGTIGRR*VM*T R*RMT
Subject  12893  KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TGR*RMT  13054

Range 7: 12698 to 12832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 43/45(96%) 0/45(0%) Plus/Plus
Query        1  REGRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDA  135
                R  RSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDA
Subject  12698  RSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDA  12832

Range 8: 13091 to 13141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 17/17(100%) 0/17(0%) Plus/Plus
Query      394  STPQITLALYTISRRTK  444
                STPQITLALYTISRRTK
Subject  13091  STPQITLALYTISRRTK  13141

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 13679 to 14095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 51/139(37%) 0/139(0%) Plus/Plus
Query       27  LMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  443
                +++EN  +      A  II++YYSIYGTNA RI RRP  L V ++ R   + L  VE       +   IN  R L R Y+ LT   R  + I RNNW+TL  +DG +A+DT + +   +       D+   + +IK+NE
Subject  13679  VLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNE  14095

Grapevine leafroll-associated virus 6, complete genome

Sequence ID: Length: 13807 Number of Matches: 1

Range 1: 11590 to 11778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 24/63(38%) 0/63(0%) Plus/Plus
Query       12  KLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVED  200
                KLV  L+ +N  L +T   A++++L  Y  Y TNA R    P  L+  IK  V+KV   GV++
Subject  11590  KLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE  11778

Grapevine leafroll-associated virus 5, complete genome

Sequence ID: Length: 13384 Number of Matches: 1

Range 1: 11153 to 11341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 23/63(37%) 0/63(0%) Plus/Plus
Query       12  KLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVED  200
                KLV  L+  N  + +T   A++I+L  Y  Y TNA R    P  L+  IK  V++V   GV++
Subject  11153  KLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE  11341

Grapevine leafroll-associated virus 4, complete genome

Sequence ID: Length: 13830 Number of Matches: 1

Range 1: 11600 to 11788 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 23/63(37%) 0/63(0%) Plus/Plus
Query       12  KLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVED  200
                KLV  L+ +N  L ++   A++++L  Y  Y TNA R    P  L+  IKG V  V   GV++
Subject  11600  KLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN  11788

Nucleotide Sequence (358 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
358

Descriptions

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 10

Range 1: 13722 to 14072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.4 bits(621) 0.0 116/117(99%) 0/117(0%) Plus/Minus
Query        2  AVYRVRKEFRWYPMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLH  352
                AVYRVRKEFRWY MLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLH
Subject  13722  AVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLH  14072

Range 2: 13721 to 14071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.0 bits(596) 0.0 115/117(98%) 0/117(0%) Minus/Plus
Query        3  DGAV*EGYGRR*RSN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWGTTEILSVHDRL  353
                DGAV*EGYGRR*RSN*D+ILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAW TTEILSVHDRL
Subject  13721  DGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRL  14071

Range 3: 13719 to 14072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
261.3 bits(564) 0.0 116/118(98%) 0/118(0%) Minus/Plus
Query        2  VMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC  355
                +MELCKKVMGADDAATKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC
Subject  13719  LMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC  14072

Range 4: 13865 to 14071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.6 bits(366) 0.0 69/69(100%) 0/69(0%) Plus/Minus
Query        3  QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  209
                QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP
Subject  13865  QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  14071

Range 5: 13721 to 13825 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 34/35(97%) 0/35(0%) Plus/Minus
Query      249  EDDVKNVQAICITYKKNFVLVAASSAPITFLHSSI  353
                EDDVKNVQAICITYKKN VLVAASSAPITFLHSSI
Subject  13721  EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSI  13825

Range 6: 13798 to 14073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 91/92(99%) 0/92(0%) Plus/Minus
Query        1  RSLSCTERISVVPHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ  276
                RSLSCTERISVV HAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ
Subject  13798  RSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ  14073

Range 7: 13720 to 13746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/9(100%) 0/9(0%) Plus/Minus
Query      328  P*PSYTAPS  354
                P*PSYTAPS
Subject  13720  P*PSYTAPS  13746

Range 8: 13846 to 14073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 75/76(99%) 0/76(0%) Minus/Plus
Query        1  TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMGYHRNSFRTR*TA  228
                TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSM YHRNSFRTR*TA
Subject  13846  TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TA  14073

Range 9: 13720 to 13794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 25/25(100%) 0/25(0%) Minus/Plus
Query      280  *WSCVRRLWAPMTQQLRQNSSCT*C  354
                *WSCVRRLWAPMTQQLRQNSSCT*C
Subject  13720  *WSCVRRLWAPMTQQLRQNSSCT*C  13794

Range 10: 15437 to 15571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 18/45(40%) 0/45(0%) Minus/Plus
Query        5  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  139
                N VR ++ YF  T IT  +  K+      +A+HGVP +F PY  D
Subject  15437  NTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFD  15571

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 14646 to 14990 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 78/115(68%) 0/115(0%) Minus/Plus
Query        2  LCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC  346
                LC+K++GA+D  T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY   V++ IK A  STGYENPVRQYLA+FTPT +TA LNGKL  NEKVMAQHGVPPKFF YT+DC
Subject  14646  LCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDC  14990

Range 2: 14783 to 14989 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 38/69(55%) 0/69(0%) Plus/Minus
Query        3  QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  209
                QS V  KN GGTPC AITFS   SLP  +AV  VGV +ARY  TGFS PV+  AC +   T +  IF P
Subject  14783  QSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP  14989

Range 3: 14636 to 14737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 16/34(47%) 0/34(0%) Plus/Minus
Query      255  DVKNVQAICITYKKNFVLVAASSAPITFLHSSIT  356
                DV NV AIC   +  FV V  S AP  F HS+ +
Subject  14636  DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFS  14737

Range 4: 14646 to 14990 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 39/115(34%) 0/115(0%) Plus/Minus
Query        2  AVYRVRKEFRWYPMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQ  346
                A+  V KE RWY +L H+LLV  * T++  R +   + R IL   V +  R +S+F  + +   + L +I    VV+LF   R R  ER  +L +   E   S  ++ +  LLTQ
Subject  14646  AIQCVGKELRWYSVLSHHLLVRS*LTVKHSRHDRRGKPRQILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ  14990

Range 5: 16336 to 16470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/45(40%) 0/45(0%) Minus/Plus
Query        5  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  139
                N VR Y+ Y+  T ++  L+GKL       A+HGVP +F P+  D
Subject  16336  NKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFD  16470

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 4

Range 1: 13700 to 13879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 29/60(48%) 0/60(0%) Minus/Plus
Query        5  VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  184
                V   + + A  + +ENP+RQY   F+ T +   LNGKL  NEKV  QHGVP +F PYT D
Subject  13700  VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFD  13879

Range 2: 13532 to 13603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 11/24(46%) 0/24(0%) Minus/Plus
Query      275  LCKKVMGADDAATKTKFFLYVMQI  346
                LC +VMG  D  + T FFL ++Q+
Subject  13532  LCAEVMGNTDQKSLTDFFLAMLQL  13603

Range 3: 15231 to 15398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/56(45%) 0/56(0%) Minus/Plus
Query        5  IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  172
                I+ +   + YENPVRQY+ +F+ T I+   +G +V N  VMA+HGV  +F PY  D
Subject  15231  IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD  15398

Range 4: 13741 to 13881 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 21/47(45%) 0/47(0%) Plus/Minus
Query        3  QSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS  143
                +S VYG+N  GTPCC  TFSF  + PF +    V      Y   GFS
Subject  13741  KSKVYGRNLLGTPCCIATFSFGLNFPFNIKCTAVAENNLAY*RIGFS  13881

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 13986 to 14165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 28/60(47%) 0/60(0%) Minus/Plus
Query        5  VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  184
                +Y  I+ A +   YENPVRQY   F+P+ I+A+  GK+  N+KV+AQHGV  +F  Y +D
Subject  13986  LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLD  14165

Range 2: 14024 to 14134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 19/37(51%) 0/37(0%) Plus/Minus
Query       36  TPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*  146
                TPCCA TF F   LP  +A++ +G  + +YC TGFS*
Subject  14024  TPCCAKTF*FGLILPTELALIILGENFRQYCRTGFS*  14134

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 1

Range 1: 12579 to 12749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 24/57(42%) 0/57(0%) Minus/Plus
Query        2  IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDC  172
                +  + A+ GYEN +RQ+   FT   +    +GKL +N K+ A HGVPP ++PY+ DC
Subject  12579  LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDC  12749

Nucleotide Sequence (496 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
496

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
350.7 2038.7 14% 5.313e-96 85% NC_004667
66.1 112.6 7% 2.414e-10 66% NC_022072
45.1 45.1 4% 0.0005341 73% NC_009992
45.1 45.1 4% 0.0005341 89% NC_010178

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 10

Range 1: 9695 to 10189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
350.7 bits(759) 0.0 154/165(93%) 0/165(0%) Minus/Plus
Query        1  VLSYMTLRQNYELSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*SSCRAKVES*FYIEVGVFVYGRF*TGNTVASSRFCLRDNSVAGSYVCRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHLQYNLLFPIWGQRLYSCGR*CLL*N  495
                VLSYMTLR NYE SFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE* SC AKV S*FYIEVGVFVYG F*TGNTVASSRFCLRDNS AGSYV RPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNH Q+NLLFPIWGQRLYSCGR*CL *N
Subject   9695  VLSYMTLRPNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEVGVFVYG*F*TGNTVASSRFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSCGR*CLR*N  10189

Range 2: 9695 to 9949 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 82/85(96%) 0/85(0%) Plus/Minus
Query      241  ACLKSSINKYAYFNIKSRFYLRSARRSFAWRLPRFLF*GELVLSQSRAKAYLCRH*TSSSADERTQRRLHEGKFIILT*RHIRQH  495
                ACLKSSINKYAYFNIKSR+YLRSARRSFAWRLPRFLF*GELVLSQSRAK YLCRH*TSSSADERTQRRLHEGKFII T*RHIRQH
Subject   9695  ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIIWT*RHIRQH  9949

Range 3: 9949 to 10188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 74/80(92%) 0/80(0%) Plus/Minus
Query        2  FQSKHYRPQEYNR*PQMGKSKLY*RWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRQT*EPATELSRRQNRLLATVL  241
                FQ KHYRPQEYNR*PQMGKS+L *+WFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGR+T*EPA ELSRRQNRLLATVL
Subject   9949  FQRKHYRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVL  10188

Range 4: 9697 to 10188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.0 bits(751) 0.0 154/164(94%) 0/164(0%) Minus/Plus
Query        2  VVVYDATSKL*TFLRVGVVECVHRR*TRFSGDINRLLREIGIERVRLKREIGEGATRMIFVQSEGRIVILY*SRRICLWTILNRQYCC**SILSS**FCCWFLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPPSVQFAFPHLGSAVVLLWPVVFTLK  493
                VVVYDATSKL* FLRVGVVECVHRR*TRFSGDINR LREIGIERVRLKREIGEGATRM FV SEG IVILY*SRRICLW ILNRQYCC**SILSS**FCCWFLR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEP S Q AFPHLGSAVVLLWPVVFTLK
Subject   9697  VVVYDATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGSAVVLLWPVVFTLK  10188

Range 5: 9774 to 10187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.3 bits(684) 0.0 129/138(93%) 0/138(0%) Plus/Minus
Query        3  FKVNTTGHRSTTADPRWGKANCTEGGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRKNQQQNYHEDKIDY*QQYCLFKIVHKQIRLLQYKITILPSLCTKIIRVAPSPISLLRRTRSIPISRKSLFMSPLNLV  416
                F VNTTGHRSTTADPRWGKA+C E GSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+RKNQQQNYHEDKIDY*QQYCLFKI+HKQIRLLQYKITILPSL TK+IRVAPSPISLLRRTRSIPISRK+LFMSPLNLV
Subject   9774  FNVNTTGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV  10187

Range 6: 9696 to 9734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 11/13(85%) 0/13(0%) Plus/Minus
Query      456  KVHNFDVASYTTT  494
                K+HN DVASYTTT
Subject   9696  KIHNLDVASYTTT  9734

Range 7: 9696 to 9950 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.6 bits(414) 0.0 82/85(96%) 0/85(0%) Minus/Plus
Query      240  CCRI*RYVKIMNFPSCRRR*VRSSALDEV*WRHK*AFARDWDRTSSP*KRNRGRRHANDLRAERR*NRDFILK*AYLFMDDFKQA  494
                CCRI*RYV+IMNFPSCRRR*VRSSALDEV*WRHK* FARDWDRTSSP*KRNRGRRHANDLRAERR* RDFILK*AYLFMDDFKQA
Subject   9696  CCRI*RYVQIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA  9950

Range 8: 10017 to 10187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 56/57(98%) 0/57(0%) Minus/Plus
Query        3  PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYFE  173
                PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVY E
Subject  10017  PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVE  10187

Range 9: 9694 to 9900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 64/69(93%) 0/69(0%) Plus/Minus
Query      290  HDSTFALHEDHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKESS*F*RSVIYDNT  496
                HD+TFA HE HSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKE+S*F RSVIYDNT
Subject   9694  HDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*FGRSVIYDNT  9900

Range 10: 10001 to 10189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 62/63(98%) 0/63(0%) Plus/Minus
Query        1  VSK*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR  189
                VS *TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR
Subject  10001  VST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR  10189

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 11048 to 11155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 24/36(67%) 0/36(0%) Minus/Plus
Query        3  LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYFE  110
                + M+VGIDFGTTFST+C+S SG  GCT VAGS++ E
Subject  11048  IPMDVGIDFGTTFSTLCYSASGAGGCTRVAGSIFVE  11155

Range 2: 11053 to 11157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 23/35(66%) 0/35(0%) Plus/Minus
Query        1  VSK*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSI  105
                VS   LPAT VQP  PD E   VL VVPKS+PTSI
Subject  11053  VSTKMLPATLVQPPAPDAE*HRVLNVVPKSMPTSI  11157

Plum bark necrosis and stem pitting-associated virus, complete genome

Sequence ID: Length: 14214 Number of Matches: 1

Range 1: 9061 to 9126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 16/22(73%) 0/22(0%) Minus/Plus
Query       39  MEVGIDFGTTFSTICFSPSGVS  104
                ME+GIDFGTTFS++CFSP+  S
Subject   9061  MELGIDFGTTFSSVCFSPANKS  9126

Pineapple mealybug wilt-associated virus 1, complete genome

Sequence ID: Length: 13071 Number of Matches: 1

Range 1: 8268 to 8321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 16/18(89%) 0/18(0%) Minus/Plus
Query       51  MEVGIDFGTTFSTICFSP  104
                MEVGIDFGTT+ST+CFSP
Subject   8268  MEVGIDFGTTYSTLCFSP  8321

Nucleotide Sequence (499 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
499

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
375.0 1843.1 28% 2.644e-103 84% NC_004667
238.0 346.2 35% 4.621e-62 46% NC_022072
159.6 159.6 33% 1.784e-38 42% NC_016509
146.8 209.4 50% 1.299e-34 39% NC_029783
104.2 104.2 32% 8.741e-22 31% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 7

Range 1: 1938 to 2426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
375.0 bits(812) 0.0 156/163(96%) 0/163(0%) Minus/Plus
Query       10  VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYNAQT  498
                VYDISPQQVAEAMDKKGAL FD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVT RSLVP+FVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSY   T
Subject   1938  VYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNT  2426

Range 2: 1937 to 2434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
339.2 bits(734) 0.0 151/166(91%) 0/166(0%) Plus/Minus
Query        2  VGCVWAL*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNANAPFLSIASATCCGDISYT  499
                V  V + *E*ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL VTSVPGDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S  +APFLSIASATCCGDISYT
Subject   1937  VPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYT  2434

Range 3: 1938 to 2414 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
324.1 bits(701) 0.0 136/159(86%) 0/159(0%) Plus/Minus
Query       22  VGIDPVDKIRIEDYRLEGHTRTSYNRYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLILKLKHVPG*SAYVRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IECQRTLLIHSLCHLLRGYIVH  498
                VGIDPVDK+RIEDY L+GHTRTSYNRY+HQRFAHERRDQ P R+L SR*LL PTHS+MMV  TVSLIL LKHVPG SAY+RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVH
Subject   1938  VGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVH  2414

Range 4: 1939 to 2364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
280.6 bits(606) 0.0 123/142(87%) 0/142(0%) Minus/Plus
Query       72  CTIYPRSRWQRLWIRRVRWHSI*LLCSPWSCCMVTAKFTWRNSIR**RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLTYALHPGTCLSLSMRDTVAATIILLCVGHRSHLEPRSRVGHWSRRSWANRWCXXXXXXXXVCP  497
                CTIYPRSR QRLWIRRVRW S *LLCSPWSCC VT KFTW+NSIR *RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL YAL PGTCLS SMRDTV  TII LCVG RSHLE R R+G WSRRSWANRWC YLL*LVLVCP
Subject   1939  CTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCP  2364

Range 5: 1937 to 2416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
279.7 bits(604) 0.0 134/160(84%) 0/160(0%) Minus/Plus
Query       20  CVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLRTHFIRERV*A*V*GIPLRLPSSYYV*GTEVTWNRGHA*VIGPDVRGQIVGVYTCCSWF*CVLQDDSPRFGFCRQDLFLQ  499
                CVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL THF+RERV*A V*GIPL LPSS+YV*G+EVTWN G+ *V+GP VRGQI GV+TCCSWF*CVL D+SPRFG CRQDLFL+
Subject   1937  CVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLR  2416

Range 6: 2200 to 2412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 60/71(85%) 0/71(0%) Plus/Minus
Query       24  RNRSCRQNPNRGLSS*RTH*NQLQQV*TPTICPRTSGPMTYA*PRFQVTSVPYT**DDGSRNGIPHTQA*T  236
                RNRSCRQ+PNRGL S*RTH*NQLQQV*TP ICPRT+GP TY *P+FQVTS PYT**DDG+ NGIPHT A*T
Subject   2200  RNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T  2412

Range 7: 1999 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 41/47(87%) 0/47(0%) Plus/Minus
Query      297  NVHTSHHTDQHCRPGNHLPSSLTYRVPPSKLRRYHTTAPRGT*ELNR  437
                NVHTSHHTDQHCRPGNHLPSS TYRV PSKL RY TT PRGT*EL R
Subject   1999  NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCR  2139

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 2657 to 3145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.0 bits(513) 0.0 97/163(60%) 0/163(0%) Minus/Plus
Query       10  VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYNAQT  498
                VYD+   ++AEA+D KG + FDL  M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK    EVTRR +V +F  K++V IPV+ G+ +SFK++VLD+DFVDR+YSY   T
Subject   2657  VYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNT  3145

Range 2: 2683 to 3117 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 67/145(46%) 0/145(0%) Plus/Minus
Query       38  STKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNANAPFLSIASA  472
                STKS S T  LKD   P+ TGI T     N  T    VTS+   F     V+ W*P   PSYS+L T PD V     V+   T E  C Y SP  PT     SP+  T VS+SSK TSPLP +SSTG+++ KS    PF S ASA
Subject   2683  STKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASA  3117

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 2516 to 3004 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 68/163(42%) 0/163(0%) Minus/Plus
Query       10  VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYNAQT  498
                VYD+   ++A+A++KK    F+L LMFP+EL   +G + + EL   V R+GD + Y VG  G+ Y HS   +  FF  + V+  SG+ F +EY GYR GYH  ++C    +  +    R +  TF G SLV IP +A   +SF+ + LDSDFVDR+YSY   T
Subject   2516  VYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNT  3004

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 3054 to 3530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 62/159(39%) 0/159(0%) Minus/Plus
Query       22  VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSY  498
                VYD+S  +VA ++  KG   FD+  M PVEL+  +G   ++EL+T+V R+GD L Y+VG  G+ Y+HSF  V    T   V  S    +  EY GYRCGYHH+ M             R +  T  GK++V  P      + FK I +D++FV R+Y+Y
Subject   3054  VYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNY  3530

Range 2: 3176 to 3352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/59(42%) 0/59(0%) Plus/Minus
Query      200  *PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSS  376
                *P  YP YS +     E  T  +V+   T  KEC Y SP  PTL*   SP   T V +S
Subject   3176  *PHLYPIYSVVYAPTSEKDTAGQVRREKTF*KECWYESPVPPTL*VSRSPLRVTTVFNS  3352

Range 3: 3053 to 3145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 12/31(39%) 0/31(0%) Plus/Minus
Query      407  SSTGNIRAKSNANAPFLSIASATCCGDISYT  499
                SSTG+I+  S    P ++   AT     SYT
Subject   3053  SSTGSIKTMSKVLTPLIAKLRATSYELRSYT  3145

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 1149 to 1625 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 50/159(31%) 0/159(0%) Minus/Plus
Query       22  VYDISPQQVAEAMDKKGALAFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSY  498
                VYDIS   + + MDK   +  ++AL+ P EL+  +GEV ++ L+T+V+ +   + Y +G  G+ Y H    +  + T + V ++ G  + + YEG R GY +  + R+  S  T  T R    +  G     +PV        K + LD DFV+R+ SY
Subject   1149  VYDISLLSLVDGMDKHKTVFTNVALILPAELIEESGEVDIQSLNTVVRWDHSTVTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSY  1625

Nucleotide Sequence (488 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
488

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
346.6 2005.1 27% 9.102e-95 97% NC_004667
71.2 71.2 31% 7.207e-12 23% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 12172 to 12624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.6 bits(750) 0.0 147/151(97%) 0/151(0%) Plus/Minus
Query        6  KGVE*LYRHIRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY*QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNF*RHDRTL*ILRYVHILPY  458
                KGVE*LYRH RF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHN *RHDRT *ILRYVHILPY
Subject  12172  KGVE*LYRHTRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPYQQIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPY  12624

Range 2: 12172 to 12624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.1 bits(749) 0.0 147/151(97%) 0/151(0%) Minus/Plus
Query        6  VGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYAADSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPF  458
                VGKYVDVTQNLESTIVPL+VMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYA DSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYD+RVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKP VPIESFDPF
Subject  12172  VGKYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPCVPIESFDPF  12624

Range 3: 12171 to 12626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 148/152(97%) 0/152(0%) Minus/Plus
Query        4  GREVCGRNAEFREYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRCRLYGFLS*DVTPDCS*AVVKRRARISASTETTSKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLS  459
                GREVCGRNAEFR+YDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIR RLYGFLS*DVTPDCS*AVVKRRARISA TETTSKFFLR KSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLS
Subject  12171  GREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLS  12626

Range 4: 12171 to 12623 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.0 bits(727) 0.0 147/151(97%) 0/151(0%) Plus/Minus
Query        7  KGSNDSIGTYGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESAAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITFNGTIVLSKFCVTSTYFPT  459
                KGSNDSIGT+GFKSLIPPGVSLLKNNLMTSLSVAITSYTQATL S*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIES AYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISIT NGTIVLSKFCVTSTYFPT
Subject  12171  KGSNDSIGTHGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYFPT  12623

Range 5: 12167 to 12625 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
323.6 bits(700) 0.0 148/153(97%) 0/153(0%) Plus/Minus
Query        5  ERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLCRRKNLLVVSVLADILARLLTTAHEQSGVTS*LRKP*SRQRMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYSLNSALRPHTSLPK  463
                ERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLL RRKNLLVVSV ADILARLLTTAHEQSGVTS*LRKP*SR RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSY LNSALRPHTSLP+
Subject  12167  ERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPE  12625

Range 6: 12227 to 12625 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
312.6 bits(676) 0.0 130/133(98%) 0/133(0%) Minus/Plus
Query        5  KLWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC*YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRMCL*SHSTPF  403
                +LWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NR+CL*SHSTPF
Subject  12227  ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRVCL*SHSTPF  12625

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 13127 to 13573 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 35/149(23%) 0/149(0%) Minus/Plus
Query       12  VGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYAADSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFD  458
                +GK   ++    + +VPL  + ++KR        P VV +++  Y ++ + L D+    R   +  Y  + +A++  +  +     ++   +   L+R +P N +YD RVAW   V + L   I   F +     +   +P+VP+E  D
Subject  13127  LGKATGLSDLGPNLVVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGRVVSVSVTSARPFVPLEGTD  13573

Nucleotide Sequence (763 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
77
154
231
308
385
462
539
616
693
763

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
593.5 3180.1 44% 7.358e-169 95% NC_004667
72.5 120.8 13% 9.044e-21 41% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 13

Range 1: 3383 to 4144 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
593.5 bits(1289) 0.0 251/254(99%) 0/254(0%) Plus/Plus
Query        2  GVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGCDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECV**DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*WCHKCARRGD*HQRGSYW*RRDPFTS  763
                GVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVG DRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECV *DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL* CHKCARRGD*HQRGSYW*RRDPFTS
Subject   3383  GVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*CCHKCARRGD*HQRGSYW*RRDPFTS  4144

Range 2: 3384 to 4142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
557.8 bits(1211) 0.0 248/253(98%) 0/253(0%) Minus/Minus
Query        3  R*MGLFFTSNFPVGANPHVAHICDTIIV*DTRSGSIAIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIIHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHSRRKPSSHD*RSTGYCARXXXXXXXXGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRR  761
                R*MGLFFTSNFPVGANPHVAHICD II *DTRSGSI IVTGNRFMLSPRWTSTFVIVKVPVIPKRLI+HIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGH RRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRR
Subject   3384  R*MGLFFTSNFPVGANPHVAHICDNIIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRR  4142

Range 3: 3573 to 4025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
338.3 bits(732) 0.0 151/151(100%) 0/151(0%) Plus/Plus
Query      192  AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMXXXXXXXXXXARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPG  644
                AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPG
Subject   3573  AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPG  4025

Range 4: 3382 to 3567 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.9 bits(312) 0.0 62/62(100%) 0/62(0%) Plus/Plus
Query        1  WRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF  186
                WRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF
Subject   3382  WRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF  3567

Range 5: 4071 to 4142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 24/24(100%) 0/24(0%) Plus/Plus
Query      690  VTNVRDVGISTNGEVTGEEETHSP  761
                VTNVRDVGISTNGEVTGEEETHSP
Subject   4071  VTNVRDVGISTNGEVTGEEETHSP  4142

Range 6: 3526 to 4047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
400.6 bits(868) 0.0 172/174(99%) 0/174(0%) Minus/Minus
Query      145  KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHHTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSQPTKTLFARLKIHRILC  666
                KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASH THSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RS PTKTLFARLKIHRILC
Subject   3526  KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC  4047

Range 7: 3382 to 3483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 34/34(100%) 0/34(0%) Minus/Minus
Query        1  TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTP  102
                TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTP
Subject   3382  TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTP  3483

Range 8: 4090 to 4143 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 18/18(100%) 0/18(0%) Minus/Minus
Query      709  EVNGSLLHQ*LPRWC*SP  762
                EVNGSLLHQ*LPRWC*SP
Subject   4090  EVNGSLLHQ*LPRWC*SP  4143

Range 9: 3383 to 3940 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
402.5 bits(872) 0.0 186/186(100%) 0/186(0%) Minus/Minus
Query        2  YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVSXXXXXXXXXXXAIPRLYFHAIGAAPKDA  559
                YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDA
Subject   3383  YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDA  3940

Range 10: 3983 to 4144 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 52/54(96%) 0/54(0%) Minus/Minus
Query      602  RGEWXXXXXXXXXXXLIPTSRTFVTPS*FETLEVDPSLSSPGTASC*VPDGPAP  763
                RGEWVSSSPVTSPLVLIPTSRTFVT S* ETLEVDPSLSSPGTASC*VPDGPAP
Subject   3983  RGEWVSSSPVTSPLVLIPTSRTFVTTS*LETLEVDPSLSSPGTASC*VPDGPAP  4144

Range 11: 3604 to 3918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.5 bits(547) 0.0 105/105(100%) 0/105(0%) Plus/Plus
Query      223  NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH  537
                NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH
Subject   3604  NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH  3918

Range 12: 3958 to 4143 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 59/62(95%) 0/62(0%) Plus/Plus
Query      577  ITGTLTMTKVLVHLGLSMKRFPVTIAMDPLLVSQTMMVSQMCATWGLAPTGKLLVKKRPIHL  762
                ITGTLTMTKVLVHLGLSMKRFPVTI MDPLLVSQ MM+SQMCATWGLAPTGKLLVKKRPIHL
Subject   3958  ITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMMLSQMCATWGLAPTGKLLVKKRPIHL  4143

Range 13: 3384 to 3458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/25(100%) 0/25(0%) Plus/Plus
Query        3  ASLGAAPIAWKYRRGIAANARRYAG  77
                ASLGAAPIAWKYRRGIAANARRYAG
Subject   3384  ASLGAAPIAWKYRRGIAANARRYAG  3458

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 5225 to 5398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 24/58(41%) 0/58(0%) Plus/Plus
Query      414  VPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD  587
                +P +VW+G +   +L+ + + +SL++R L  D +PQ+  +  +EGRNVYDE L+YY+D
Subject   5225  MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD  5398

Range 2: 5018 to 5137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 21/40(52%) 0/40(0%) Plus/Plus
Query      207  RATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLM  326
                R TV  RQVP ALL  + SY + G     +WAH LPR+LM
Subject   5018  RTTVGTRQVPSALLYSTLSYWVGGVCAGDLWAHILPRNLM  5137

Nucleotide Sequence (626 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
63
126
189
252
315
378
441
504
567
626

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
479.9 2574.8 34% 9.3e-135 93% NC_004667
316.8 585.0 28% 1.184e-85 32% NC_022072
152.7 152.7 31% 2.843e-36 38% NC_005065
209.1 291.9 20% 3.075e-53 32% NC_029783
93.2 387.9 47% 7.451e-55 45% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 10

Range 1: 6165 to 6758 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
479.9 bits(1041) 0.0 193/198(97%) 0/198(0%) Plus/Minus
Query       31  KSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVGVYFSYVISGSNWPFGQRSYYWFILTANDLFRVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI  624
                +SGINQ*ACVSRQTNKYMRLFSE*GVIG LRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHV VYFSYVISGSNWPFGQRSYYWF+LTANDLFRVTLFRSPYGH*GQQVANI*RTPV FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI
Subject   6165  QSGINQ*ACVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI  6758

Range 2: 6165 to 6761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
469.4 bits(1018) 0.0 198/199(99%) 0/199(0%) Minus/Plus
Query       28  YKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS  624
                YKRVLVDEV+MMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS
Subject   6165  YKRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS  6761

Range 3: 6163 to 6558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.5 bits(656) 0.0 129/132(98%) 0/132(0%) Minus/Plus
Query      231  CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNHTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRINQ**DRCPKGQLEPLMT*LK*TPTCTCA*PSW  626
                CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLN TGVR*MFATCCPQ*P*GERKSVTLKRSLAVR NQ**DRCPKGQLEPLMT*LK*T TCTCA*PSW
Subject   6163  CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQLEPLMT*LK*TLTCTCA*PSW  6558

Range 4: 6589 to 6756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 55/56(98%) 0/56(0%) Minus/Plus
Query       33  EKEKKHQ**QCMKHREKHSVMWYCLGRRRPMTPYSLNNRIYLLVCRDTHAHWFMPL  200
                EKEKKHQ**QCMKHREKHSVMWYCLGRR+PMTPYSLNNRIYLLVCRDTHAHWFMPL
Subject   6589  EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTHAHWFMPL  6756

Range 5: 6164 to 6442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 92/93(99%) 0/93(0%) Plus/Minus
Query      347  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLY  625
                FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIM TSSTKTLLY
Subject   6164  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSSTKTLLY  6442

Range 6: 6494 to 6766 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
213.7 bits(460) 0.0 89/91(98%) 0/91(0%) Plus/Minus
Query       23  FGERAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  295
                F  RAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI
Subject   6494  FELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  6766

Range 7: 6257 to 6766 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.9 bits(753) 0.0 164/170(96%) 0/170(0%) Minus/Plus
Query       23  FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IIQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G*TSSKIAVQKANWNH**RS*NKRRRVLVHDPXXXXXXXXXXXGKRKRNTSDDSA*STGKNIQ*CGIV*DEEGR*LPIH*TTAYTCWFVETHTLTGLCRSFTK  532
                FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*I+QVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G TSSKIAVQKANWNH**RS*NKR RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEE R*LPIH*TTAYTCWFVETHTLTGLCRS  K
Subject   6257  FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHTLTGLCRSELK  6766

Range 8: 6164 to 6205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 13/14(93%) 0/14(0%) Minus/Plus
Query      584  V*KGFGG*GVHDAS  625
                V*KGFGG*G HDAS
Subject   6164  V*KGFGG*GAHDAS  6205

Range 9: 6163 to 6534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 120/124(97%) 0/124(0%) Plus/Minus
Query      255  RRRLFQLRHQWFQLAFWTAILLLVYPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCMI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTXXXXXXXXXXXXDASCTPHPPKPFYT  626
                R+RLFQLRHQWFQLAFWTAILLLV PYR*RPFQGNTFPFPLRSLRTTSSKHLTDTC I*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASC PHPPKPFYT
Subject   6163  RQRLFQLRHQWFQLAFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASCAPHPPKPFYT  6534

Range 10: 6619 to 6765 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 46/49(94%) 0/49(0%) Plus/Minus
Query       24  LVKERHKPVSVCVSTNQQVYAVV**IGSHRPSSS*TIPHH*MFFPVLHA  170
                L  ERHKPVSVCVSTNQQVYAVV**IGSHR SSS*TIPHH*MFFPVLHA
Subject   6619  LSSERHKPVSVCVSTNQQVYAVV**IGSHRLSSS*TIPHH*MFFPVLHA  6765

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 7229 to 7825 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.8 bits(685) 0.0 130/199(65%) 0/199(0%) Minus/Plus
Query       28  YKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS  624
                Y R+LVDEVYMMH+GLLQ G FA+GA EG+F+GD++QIPFINREK+FR   +   P+K  + YT ++YRCPLDVC++LS++     EKCY   VVSG   PVVRS  KRPIG+  DVA+I ADVYLC TQ EK +MKR L   G+  PVMTVHEAQGKTF  VVLFRTK+ADDS+F  QPH LV LSRHT SLVYAALS
Subject   7229  YDRILVDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHTSSLVYAALS  7825

Range 2: 7558 to 7830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 53/91(58%) 0/91(0%) Plus/Minus
Query       23  FGERAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  295
                F  RAA*T E VCL++ T   G  +N  SSA  VLN TT   VFPCAS TVITG + P  FN  FIS FS  V HKYTSA I ATS+ +PI
Subject   7558  FELRAA*TREEVCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI  7830

Range 3: 7228 to 7497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 45/90(50%) 0/90(0%) Plus/Minus
Query      356  *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLY  625
                *HFS   ++  DN   TSNG  Y   VY    F G +      N FS FM GI*  SP K PS AP AK P+CSKP CIM TSST+   Y
Subject   7228  *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKPSCIM*TSSTRIRSY  7497

Range 4: 7511 to 7819 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 33/103(32%) 0/103(0%) Plus/Minus
Query       34  SGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVGVYFSYVISGSNWPFGQRSYYWFILTAN  342
                S IN+   +  +++  +RL  E  V+  L  KQ +  E FSL  M CHH    S ++  PLH+ LL+L   QVH+ +    +   S+ P  + S+Y  + + N
Subject   7511  SSINERRSMP*KSH*SVRLRVEHTVVSALSSKQNNFLESFSLRLMDCHHRFNSSEAI*LPLHLSLLRLCLTQVHISLDLRNISHTSDRPLLK*SHYRRLQSGN  7819

Range 5: 7229 to 7417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 21/63(33%) 0/63(0%) Plus/Minus
Query      436  VYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFI  624
                V +  LL  + + +  ++LL VYE  L+ +S + +   +  +   L * LMHHV LI++N  I
Subject   7229  VLDQVLLRFEETMLAAEYLLTVYERNLMNISVENSLFGS*SKTPKLQ*TLMHHVDLINKNTVI  7417

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 4779 to 5366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 75/196(38%) 0/196(0%) Minus/Plus
Query       28  VLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALS  615
                V +DE +++H G L++     GA E   +GD  QIPFINR + F     V    K  V+  + SYRCP DVC +LS    +    CYP  V  G      RS+S + I +  DV   N DV++  TQ EK  +    + +  +    TVHE QGKT   V + R K A+DS+FT   H +V LSRHT    Y ++S
Subject   4779  VCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHTVGARYYSIS  5366

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 6990 to 7562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 89/191(47%) 0/191(0%) Minus/Plus
Query       40  LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVY  612
                L+DEVY++H+G L   + A    E + +GD+NQIPF NREK+F M  +   P +  + YT+ SYRCP DVCYLLS M     + CYP  V + +D+  +RS+   PI    +    + DV+L  TQ EK+++ R      +  PV T+HEAQGKTF  V L R KKADDS+    PH LVG+SRHTRS VY
Subject   6990  LIDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHTRSFVY  7562

Range 2: 7343 to 7558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 32/72(44%) 0/72(0%) Plus/Minus
Query       44  TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS  259
                T +RVCL+ PT   G     ESSAFF     T  NVFP AS  V TG         L  S FS  V  K TS
Subject   7343  TKDRVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS  7558

Range 3: 7101 to 7250 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 16/50(32%) 0/50(0%) Plus/Minus
Query      352  RVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPV  501
                RVT F     H GQ++A++  T V +  V +  L+      +H KHL  +
Subject   7101  RVTRFPIQIHHLGQEIAHVRWTSVGYVGVLDLRLIGFDRRVVHDKHLFAI  7250

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 5

Range 1: 7076 to 7303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 38/76(50%) 0/76(0%) Minus/Plus
Query       10  QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSPNTPNT  237
                ++++   K  +    K   V+T HEAQGKT+ DVVL R KKADD +F+++PHI+V LSRHTRS+ YA LS    +T
Subject   7076  EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHTRSMKYAVLSSKMSDT  7303

Range 2: 6845 to 7087 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 41/81(51%) 0/81(0%) Minus/Plus
Query      211  KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR  453
                +E + YT  SYRCP DVCY+LSSMT     K YP  V    D   +RS  K PI T +D     ADVYL MTQ EK++M+R
Subject   6845  EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR  7087

Range 3: 6686 to 6814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 27/43(63%) 0/43(0%) Minus/Plus
Query      484  LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF  612
                L+DEVYM+H+G+ QL V A G  E + +GD NQIPFINREK F
Subject   6686  LIDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF  6814

Range 4: 6691 to 6924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 35/78(45%) 0/78(0%) Plus/Minus
Query      374  LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSS  607
                ++VI+DN * TS GHLY++ VY+  S   +  +  + N FSL +NGI*F+SP    S  P+A T + + P C +YTSS
Subject   6691  ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSS  6924

Range 5: 7120 to 7260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 28/47(60%) 0/47(0%) Plus/Minus
Query       53  RVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSF  193
                RVCLDK T+I G      SSAFF L NTTS  V PCASC V T   F
Subject   7120  RVCLDKATTI*GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLF  7260

Nucleotide Sequence (1204 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
121
242
363
484
605
726
847
968
1089
1204

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
847.4 4461.7 35% 0 87% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 16

Range 1: 16644 to 17846 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
847.4 bits(1843) 0.0 375/401(94%) 0/401(0%) Minus/Minus
Query        2  VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNITYSTKTKNEQKD*PNYFIFLTFVYFKFIEESLPINSSQTFPFSTYAN*SI*IVTNKHTD*RYAYKYIPPITNVTSHDAIVYRYSDGFL*VPHRLLQQLTISTANKHAQISSDNCNPFEDLTLAEQHNIFIVLRNKASRATS*RSRNLKRTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDRLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*SNL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQXXXXXLRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVSAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQQEPKHTQHN  1204
                VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRN TYSTK K+EQKD*PNYFIFLTFVYFKFIE  LPI    TF FSTYAN*SI*IVTNKHTD*RYAYKYIPP+TNVTSHDAIVYRYSDGF *VPHRLLQ+LTISTANKHAQISSDNCNPFE+LTLAEQHNIFIVLRNKASRATS*RSRNL+RTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CID LSIQDIFCFPSFHDTLRITPST**PPEHLPNV*+NL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLV AVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQ+   +  +N
Subject  16644  VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYN  17846

Range 2: 16670 to 17419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
534.9 bits(1161) 0.0 242/250(97%) 0/250(0%) Plus/Plus
Query       28  VAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEVNXXXXXXXXXXXXXLHRTILIDSIDSAFAYGQVGCLVGIARGLIKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSSNFGIARMLLLTLCCGAL*KCYVVQPVSNLQTGYNYRYLFAH  777
                VAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATT LHRTILIDSIDSAFAY QVGCLVGIARGL++HSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFS NFGIARMLLLTLCCGAL*KCYVVQPVSN QTGYNYRYLFAH
Subject  16670  VAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAH  17419

Range 3: 17453 to 17845 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.3 bits(518) 0.0 116/131(89%) 0/131(0%) Plus/Plus
Query      811  EGDEALRETHQSSDTLLRRAK*RL*WVGCIYRRNVNRYVY*LLFICSN*HM*KKGRSGNY**VKTLQ*I*NKQK*EK*NN*ASLFVRFSFL*NRLYFEVR*LNSTSRFNTLIFVKLVRKADSDIILV*YNK  1203
                EGDEALR+THQSS TLLRRAK*RL* VGCIYRRNVNRYVY*LLFICSN*HM*K+ R  N * VK LQ*I*NKQK*EK*NN*ASLFVR S L*NR YFEVR*LN TSRFNTLIFVKLVRK DSDIILV*YNK
Subject  17453  EGDEALRKTHQSSGTLLRRAK*RL*RVGCIYRRNVNRYVY*LLFICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV*YNK  17845

Range 4: 16670 to 17629 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
621.9 bits(1351) 0.0 306/320(96%) 0/320(0%) Minus/Minus
Query       28  VPRPSLFLHMLIRAYK**LXXXXXXXXXXXTSHPSQTSLRTTQ*CIATLMGFSKCLIAFYNN*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEI*RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIA*VSKISFASPLSTTHFE*LHRLDDLQNIFRMFNQTSSYAHQTPHLAISEGGVYTVNENCSMQHSRRCSSYVSLHDVNLSLRIVYRCPXXXXXXXXXXXXXXVKCCHVIIVQGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRN  987
                V +PS FLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*C ATLMGFSKCLIAFY +*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEI RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALI *VSKISFASPLSTTHFE*LHRLDDLQNIFRM  QTSSYAHQTPHL ISEGGVYTVNENCSMQ SRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQ+VKCCHVIIV+GGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRN
Subject  16670  VVKPSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRN  17629

Range 5: 17699 to 17845 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 46/49(94%) 0/49(0%) Minus/Minus
Query     1057  FIILY*YNITIGFTD*FYKYQSIKP*GRV*SSYLEI*PILQKRKTNKKT  1203
                FIILY*YNITI FTD*FYKYQSIKP*G+V*SSYLEI PILQKRKTNKKT
Subject  17699  FIILY*YNITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKT  17845

Range 6: 17325 to 17846 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
343.8 bits(744) 0.0 165/174(95%) 0/174(0%) Plus/Plus
Query      683  *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKREGLGTINR*RLFNKFEINKSKKNEXXXXXXXXXXXXCRIGYISR*DD*TLPHGLIL*YL*N*SVKPIVILY*YSIIN  1204
                *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVA+HYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRK EGL T N *+ FNKFEINKSKKNEIIRLVFLFVFRFCRIG+ISR*DD*TLPHGLIL*YL*N*SVK IVILY*YSIIN
Subject  17325  *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLTTSNG*KSFNKFEINKSKKNEIIRLVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIIN  17846

Range 7: 16998 to 17264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
207.3 bits(446) 0.0 85/89(96%) 0/89(0%) Plus/Plus
Query      356  CIEQFSLTV*TPPSLMAKWGVWWA*LEV*LNIRKMFWRSSSRWSYSKCVVERGEAKDILDT*AINALTNT*C*LRPDWPQLKEQTYYER  622
                CIEQFSLTV*TPPSLM KWGVWWA*LEV L+IRKMFWRSSSRWSYSKCVVERGEAKDILDT* INALTNT*C*LRPDWPQLKEQTYYER
Subject  16998  CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER  17264

Range 8: 16644 to 16928 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 85/95(89%) 0/95(0%) Plus/Plus
Query        2  IVLGVFGFLLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPCTIMT*QHFTF*LTRIIALMIRRAGQ  286
                I++ +    LRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPP TIMT*QHFT *LTRIIALMIRRAGQ
Subject  16644  IIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFTL*LTRIIALMIRRAGQ  16928

Range 9: 16672 to 17217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
366.3 bits(793) 0.0 177/182(97%) 0/182(0%) Plus/Plus
Query       30  CES*VYFVWGESRIGVRRFLEASLXXXXXXXXXXXALTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDDCAA*NNSH*QYRLRLRLWPSGVFGGHS*RFD*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILKRSMH*QIHDAN  575
                CES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTA TNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD AA*NNSH*QYRLRLRL PSGVFGGHS*RF *TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK SMH*QIHDAN
Subject  16672  CES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN  17217

Range 10: 17443 to 17703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 76/87(87%) 0/87(0%) Plus/Plus
Query      801  SCCRRR*GT*RNPSE*RYTIASCEVTFVMGGMYL*A*R*SVCLLVTIYML*LAYVEKGKVWELLIGKDSSINLK*TKVRKMK*LG*S  1061
                S CRRR*GT*+NPSE*RYTIASCEVTFV GGMYL*A*R*SVCLLVTIYML*LAYVEK KV + ++GK+ SINLK*TKVRKMK*LG*S
Subject  17443  SFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEKEKV*QPVMGKNPSINLK*TKVRKMK*LG*S  17703

Range 11: 17260 to 17391 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 42/44(95%) 0/44(0%) Plus/Plus
Query      618  NESSSQW**VLFKFRDR*DVALDALLRSTIKMLCCSASVKSSNG  749
                NESSSQW**VL KFRDR*DVALDALLRSTIKMLCCSASVK SNG
Subject  17260  NESSSQW**VLSKFRDR*DVALDALLRSTIKMLCCSASVKFSNG  17391

Range 12: 17743 to 17844 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 34/34(100%) 0/34(0%) Plus/Plus
Query     1101  RGKMTKLYLTV*YSDICKISP*SR**YYISIV**  1202
                RGKMTKLYLTV*YSDICKISP*SR**YYISIV**
Subject  17743  RGKMTKLYLTV*YSDICKISP*SR**YYISIV**  17844

Range 13: 17503 to 17844 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 99/114(87%) 0/114(0%) Minus/Minus
Query      861  LLYYTNIISLSALRTNFTNIRVLNREVEFSHLTSKYNLFYKNEKRTKRLA*LFHFSYFCLFQIY*RVFTY**FPDLPFFYIC*LEHINSN**TYRLTLRL*IHPTHHKRHFARR  1202
                LLYYTNIISLS LRTNFTNIRVLNREV+FSHLTSK NLFYK+E+RTKRLA*LFHFSYFCLFQIY*R+FT+    +L  FYIC*LEHINSN**TYRLTLRL*IHPT HKRHFARR
Subject  17503  LLYYTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTHYWLLNLLLFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARR  17844

Range 14: 16651 to 16941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(455) 0.0 89/97(92%) 0/97(0%) Minus/Minus
Query        9  GSFIAAQRVVSSTLLYALIKM*SAVTSLLYKAERICTIINDRSMML*PRDEISKCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATRTQTHP  299
                GSFIAAQRVVSSTLLYALIK+*SAVTSLLY+AERICTIINDRSMML*PRDEIS+CCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFAT     P
Subject  16651  GSFIAAQRVVSSTLLYALIKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQSP  16941

Range 15: 17257 to 17436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 58/60(97%) 0/60(0%) Minus/Minus
Query      615  *HR*QTCANK*R*L*PV*RFDTG*TT*HFYSAPQQSVKSNILAIPKFEENLLPLTR*FVR  794
                *HR*QTCANK*R*L*PV*+FDTG*TT*HFYSAPQQSVKSNILAIPKF ENLLPLTR*FVR
Subject  17257  *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*FVR  17436

Range 16: 17008 to 17217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 68/70(97%) 0/70(0%) Minus/Minus
Query      366  VSIMYLLVH*SXXXXXXXXXXXXXRHTSNNSIDLMTSRTSSECLIKPLAMPTKHPTWP*AKAESILSMRI  575
                VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECL KPLAMPTKHPTW *AKAESILSMRI
Subject  17008  VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRI  17217

Nucleotide Sequence (454 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
46
92
138
184
230
276
322
368
414
454

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
337.4 1883.1 41% 4.76e-92 84% NC_004667
205.0 367.3 18% 3.473e-52 32% NC_022072
156.4 156.4 30% 1.451e-37 46% NC_016509
103.7 128.6 27% 2.288e-23 43% NC_005065
116.5 116.5 22% 1.452e-25 44% NC_029783

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 11082 to 11510 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
337.4 bits(730) 0.0 140/143(98%) 0/143(0%) Plus/Plus
Query       23  SDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL  451
                SDVANLPQISKVVFDSTDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV  QPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL
Subject  11082  SDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL  11510

Range 2: 11082 to 11510 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
332.8 bits(720) 0.0 139/143(97%) 0/143(0%) Minus/Minus
Query       23  QIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRYLRQISHIT  451
                QIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERR I*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLK HYLVR*RIR*SVHQSQSAITCQ+IAVNLSPTSHRTSKIGTVEHD RYLRQISHIT
Subject  11082  QIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHIT  11510

Range 3: 11074 to 11511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
324.1 bits(701) 0.0 141/146(97%) 0/146(0%) Minus/Minus
Query       15  PDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSVHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAENPLPRPLAYSLKCPPVSVRYYLPKYRSXXXXXXXPNI*NRYCRTRP*ISAAN*PHHLDP  452
                PDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTS HLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAE+PLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTR *ISAAN*PHH  P
Subject  11074  PDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P  11511

Range 4: 11083 to 11511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
319.1 bits(690) 0.0 139/143(97%) 0/143(0%) Plus/Plus
Query       24  VMWLICRRYLRSCSTVPILDVRWLVGLRFTAIFWQVIAD*DWWTLXXXXXXXX*WIFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MNRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIW  452
                VMWLICRRYL+SCSTVPILDVRWLVGLRFTAI WQVIAD*DWWTL*RIR*RTR*W+FSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*M+RRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIW
Subject  11083  VMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIW  11511

Range 5: 11264 to 11512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 82/83(99%) 0/83(0%) Minus/Minus
Query      205  SRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI  453
                +RYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI
Subject  11264  TRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI  11512

Range 6: 11081 to 11197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 38/39(97%) 0/39(0%) Minus/Minus
Query       22  PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKLATSL  138
                PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSL
Subject  11081  PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSL  11197

Range 7: 11192 to 11512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
246.2 bits(531) 0.0 105/107(98%) 0/107(0%) Plus/Plus
Query      133  *RTETGGHFNEYANGRGSGFSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*TDVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISG  453
                *RTETGGHFNEYANGRGSG SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK* DVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISG
Subject  11192  *RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISG  11512

Range 8: 11075 to 11131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 16/19(84%) 0/19(0%) Plus/Plus
Query       16  GSK*CG*FAADI*GRVRQY  72
                G +*CG*FAADI* RVRQY
Subject  11075  GQE*CG*FAADI*SRVRQY  11131

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 12056 to 12475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.0 bits(441) 0.0 80/140(57%) 0/140(0%) Plus/Plus
Query       29  VANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEY  448
                +A LP ++ VV+D  DFRCSVACGAKVYCD L G   LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT  Y+V   +VVYG++EGE NR++LNE TFR   +       TD  +++LS DGT+SV +NG+   NE+
Subject  12056  IAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEF  12475

Range 2: 12074 to 12367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 31/98(32%) 0/98(0%) Minus/Minus
Query       47  YAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRY  340
                + PER F+  +++ L F ++++ I  TH V   +   YW    +N  RL++++LV   I   ++QS+  +T   IAV    T + TSK+  V H   Y
Subject  12074  FTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASY  12367

Range 3: 12058 to 12159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 21/34(62%) 0/34(0%) Minus/Minus
Query       31  LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKLA  132
                LP K SQ T AP ATEHLKS  S TTL   G  A
Subject  12058  LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAA  12159

Range 4: 12235 to 12270 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 10/12(83%) 0/12(0%) Minus/Minus
Query      208  VYEQGIGLPFGK  243
                VYEQGIG P GK
Subject  12235  VYEQGIGFPLGK  12270

Range 5: 12298 to 12357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 12/20(60%) 0/20(0%) Minus/Minus
Query      271  NVGSFRKALLFSPSNIPYTT  330
                NV S R    FSPS  PYTT
Subject  12298  NVSSLR*LRFFSPSYTPYTT  12357

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 10882 to 11295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 63/138(46%) 0/138(0%) Plus/Plus
Query       38  LPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL  451
                LP +S+  +DS  FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+  F  +VIFPKG PIP  Y   + + G  + YGI EGE+NR +LNE  F+G   R  +  ++D  ++ +S DG + + V+G ++KN  L
Subject  10882  LPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL  11295

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 10327 to 10629 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 44/101(44%) 0/101(0%) Plus/Plus
Query       29  VANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTF  331
                VA    + +VVFD+  FR +VA GAKVY D L  N GL LVDTL++ + DE+V  +  V+  KG  +P +    Y   GG++   ++EGE+  AF+NEPT+
Subject  10327  VATCRGVKRVVFDNNTFRIAVAVGAKVYSDSLVSNKGLVLVDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPTY  10629

Range 2: 10681 to 10743 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 9/21(43%) 0/21(0%) Plus/Plus
Query      389  LSTDGTVSVIVNGEEVKNEYL  451
                L  DG++ V V G+++KN++L
Subject  10681  LRRDGSLVVSVFGKQIKNKFL  10743

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 11306 to 11602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 44/99(44%) 0/99(0%) Plus/Plus
Query       47  ISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVS  343
                ++ V+++   FR SVA GAK+Y D+L   S L L+D+L+ TL+D++  F+  ++FPKG+ IP ++   YTVG  +V YG++EGE N  +LN+ TF+GV+
Subject  11306  VTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA  11602