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Queries

Nucleotide Sequence (335 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
335

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
90.0 90.0 27% 9.029e-18 46% NC_033494

Alignments

Botryosphaeria dothidea virus 1 strain YZN115 segment RNA3 hypothetical protein gene, complete cds

Sequence ID: Length: 1967 Number of Matches: 1

Range 1: 439 to 705 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 41/89(46%) 0/89(0%) Plus/Plus
Query        1  TRLLILGSGASRVVTKYLVRGVSSVTFVDTSEDALSTLASHITSTGLEARV*AECVCQVAWSYLREYDEEPYDTVVATKCVGLILAHAP  267
                +R+L+LGSG+SR +   L R  +S  FVDT++DAL TL  ++ S GL A + A  V Q AW YL   +   YD ++ATKC+GL+ A  P
Subject    439  SRILVLGSGSSRGMIPILRRLPASAVFVDTNQDALDTLEDNLASVGLLAPIDATFVNQDAWEYLENAEVASYDLILATKCMGLVYAVDP  705

Nucleotide Sequence (405 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
41
82
123
164
205
246
287
328
369
405

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
53.3 164.2 31% 5.047e-15 33% NC_033494

Alignments

Botryosphaeria dothidea virus 1 strain YZN115 segment RNA3 hypothetical protein gene, complete cds

Sequence ID: Length: 1967 Number of Matches: 4

Range 1: 802 to 996 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 25/65(38%) 0/65(0%) Minus/Plus
Query        3  EWEGKPIATGMDPAMFDLATVGGRYDNDIGYSWDISHPDLDGVARFSSPFADHQVQVWHVFHFRA  197
                E  G PI     P  F LAT+ GRY  D+ Y+   +   LD VA+ +     H VQ W  +H+RA
Subject    802  ERHGTPIPDVTAPEDFALATIAGRYAGDVCYTAQTTCTALDLVAKLTFDSVGHGVQEWAAYHYRA  996

Range 2: 601 to 705 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 16/35(46%) 0/35(0%) Minus/Plus
Query      294  YVCDDAWEYLKGLDTEQFDLIIALKCVGLILSSGP  398
                +V  DAWEYL+  +   +DLI+A KC+GL+ +  P
Subject    601  FVNQDAWEYLENAEVASYDLILATKCMGLVYAVDP  705

Range 3: 801 to 998 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 22/66(33%) 0/66(0%) Plus/Minus
Query        1  RARK*KTCQTWT*WSAKGEEKRATPSRSGCEISQE*PMSLS*RPPTVARSNIAGSMPVAMGFPSHS  198
                RAR      +WT W  + +   AT SR+   +   *  S +*RP  VAR+  +G++   +G P  S
Subject    801  RAR*W*AAHSWTPWPTESKVSLATRSRAVQVVCAV*HTSPA*RPAMVARAKSSGAVTSGIGVPWRS  998

Range 4: 612 to 686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 13/25(52%) 0/25(0%) Plus/Minus
Query      313  SPTHLSAMMRSNCSVSRPLRYSHAS  387
                SP H  A MRS  + S   +YSHAS
Subject    612  SPMHFVARMRS*DATSAFSKYSHAS  686

Nucleotide Sequence (453 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
46
92
138
184
230
276
322
368
414
453

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
117.0 117.0 28% 1.057e-25 34% NC_024704
165.6 301.5 49% 2.53e-40 37% NC_033476

Alignments

Cladosporium cladosporioides virus 1 putative RNA-dependent RNA polymerase gene, complete cds

Sequence ID: Length: 2434 Number of Matches: 1

Range 1: 1754 to 2137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 43/128(34%) 0/128(0%) Minus/Plus
Query        1  SGITTNISRVRFCSRAVVRTPEGLLVTRTHTALYQKLAARPEHDPMTDKLYVRAIMADYMGTDPVAYEAFSQVDRQLDVALDISVVTPKIKKILAPTARSFYGAEDDQALLNVLASLRAGQIDRRALL  384
                +G+++ +  VRFCSR  + TP GL + R+HT+++ K+  R E DP+ +KLYVRA+M D +GTDP+ Y     ++  +DV  D  +   ++ K++ P A+  YG    +++ + ++ L++     R +L
Subject   1754  TGVSSQLGDVRFCSRGALLTPHGLAIVRSHTSIFHKIGGRAEVDPVINKLYVRALMVDLLGTDPILYHGLQHLEASIDVPGDARLSEHRLHKMVEPFAKKLYGNSSPESVASFVSLLKSPSAPDRGVL  2137

Botryosphaeria dothidea virus 1 strain YZN115 RNA-dependent RNA polymerase (RdRp) gene, complete cds

Sequence ID: Length: 2397 Number of Matches: 3

Range 1: 1773 to 2138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 66/122(54%) 0/122(0%) Minus/Plus
Query        1  ISRVRFCSRAVVRTPEGLLVTRTHTALYQKLAARPEHDPMTDKLYVRAIMADYMGTDPVAYEAFSQVDRQLDVALDISVVTPKIKKILAPTARSFYGAEDDQALLNVLASLRAGQIDRRALL  366
                +   RFCSRA V+TP GL+VTR HT++YQKLA RP HDP  DKLYVRA+M D+MGTDP+A+E    VD  +DV L    +TP ++ +L   A+SFYG   D +L  VL +L   ++DRRALL
Subject   1773  VGDARFCSRAAVQTPYGLIVTRPHTSIYQKLAGRPRHDPAIDKLYVRALMMDHMGTDPIAFEIMDSVDSMVDVDLSTVGLTPAVRSVLTDAAKSFYGDASDDSLSRVLEALSTSRVDRRALL  2138

Range 2: 1790 to 2092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 49/101(49%) 0/101(0%) Plus/Minus
Query       47  TLRRAWSSSAP*KLRAVGARIFLIFGVTTEMSNATSNCLSTWENASYATGSVPM*SAIIARTYSLSVIGSCSGRAASFW*RAVCVRVTSRPSGVLTTAREQ  349
                TL R  S ++P*   A         GV+  +  +TS   ST    S A GSVPM S + ART SLS+ GS  GR ASFW*  V  RVT RP GV T AREQ
Subject   1790  TLERLSSLASP*NDLAASVSTERTAGVSPTVDRSTSTIESTLSMISKAMGSVPMWSIMSART*SLSIAGSWRGRPASFW*IEVWGRVTIRP*GVWTAAREQ  2092

Range 3: 1761 to 1997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 29/79(37%) 0/79(0%) Plus/Minus
Query      142  QRHIQLPVNLGECLIRDGISAHVVCHYCADIQLIRHRVMFRACRKLLVEGCMRAGDEQAFWCSDYCPRAEPNTADVRSN  378
                Q H+   VN    L  DG+  HVV H  A ++L+  RVM RA  +LLV   M   D++   C D   RAE    + R++
Subject   1761  QVHVNHRVNAIHDLEGDGVGTHVVHHERAHVELVNSRVMARATCELLVN*GMGPRDDKTIGCLDSSTRAEARVPNPRAD  1997