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Nucleotide Sequence (334 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
334

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
251.7 1230.0 28% 1.84e-66 79% NC_021480
52.8 83.7 16% 2.731e-10 31% NC_033817

Alignments

Grapevine satellite virus isolate AUD46129, complete sequence

Sequence ID: Length: 1060 Number of Matches: 7

Range 1: 635 to 958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.7 bits(543) 0.0 102/108(94%) 0/108(0%) Plus/Plus
Query        1  RDNSTPMKDLVFFMRKANFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDANSIKNKIIVRNFDLM*VRVGAIRPNTP  324
                RDNSTPMKDLVFFMRK NFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCD NSIKNKIIVRNFDLM*VRVG  R N+P
Subject    635  RDNSTPMKDLVFFMRKVNFVDDDVYDFVMAHYVSWGWYGGNIGITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAFSRLCDTNSIKNKIIVRNFDLM*VRVGVCRLNSP  958

Range 2: 635 to 958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.6 bits(462) 0.0 94/108(87%) 0/108(0%) Minus/Minus
Query        1  GCVWTNCAHPDSH*VKISYNNLILNTIRVTETAKCYQL*EFITYR*RISNAI*KFFTLITKIEGDADVSTVPPPTDIVGHHKIVNIVIDEVCLSHEKY*IFHGCAVIS  324
                G V T  AHPDSH*+KISYNNLIL TIRVTETAKCYQL*EFITYR*RISN I*KFFT I KIEG+ DVSTVP PTDI+GHHKIVNIVIDEV LSHEKY*IFHGCAVIS
Subject    635  G*VKTTYAHPDSH*IKISYNNLILYTIRVTETAKCYQL*EFITYR*RISNTI*KFFTFIAKIEGNTDVSTVPTPTDIMGHHKIVNIVIDEVYLSHEKY*IFHGCAVIS  958

Range 3: 637 to 948 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.6 bits(451) 0.0 93/104(89%) 0/104(0%) Plus/Plus
Query        3  R*QHTHERSSIFHEKGKLRR*RCLRFCDGPLCQLGVVRWKHRHHLRFW**V*RIFKSRY*SVSGK**ILTVDSI*PSL*RE*Y*E*DYCKKF*LNVSPGGRNSS  314
                R*QHTHER SIFHEKGKLRR*RCLRFCDGPLCQLG+VRWKHR++LRFW *+*RIFKS Y*SVSGK**ILTVDSI*PSL* E*Y E*DYCKKF* NVSPGGR SS
Subject    637  R*QHTHERFSIFHEKGKLRR*RCLRFCDGPLCQLGLVRWKHRYYLRFWQ*M*RIFKSCY*SVSGK**ILTVDSI*PSL*HE*YKE*DYCKKF*FNVSPGGRMSS  948

Range 4: 636 to 947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 92/104(88%) 0/104(0%) Minus/Minus
Query        2  DELRPPGLTLSQNFLQXXXXXXXSRHRDG*MLSTVRIYYLPLTDQ*RDLKILYTYYQNRR*CRCFHRTTPN*HSGPSQNRKHRHRRSLPFS*KILDLSWVCCYL  313
                D++RPPGLTL+QNFLQ*SYS YYS HRDG*MLSTVRIYYLPLTDQ* DLKILY Y QNRR* RCFHRT PN*H+GPSQNRKHRHRRSLPFS*KIL+LSWVCCYL
Subject    636  DDIRPPGLTLNQNFLQ*SYSLYYSCHRDG*MLSTVRIYYLPLTDQ*HDLKILYIYCQNRR*YRCFHRTNPN*HNGPSQNRKHRHRRSLPFS*KILNLSWVCCYL  947

Range 5: 637 to 957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 96/107(90%) 0/107(0%) Minus/Minus
Query        3  GVFGRIAPTRTHIKSKXXXXXXXXXXFASQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVMPMFPPYHPQLT*WAIXXXXXXXXXKFAFLMKNTRSFMGVLLS  323
                G   R  PTRTHIKSKFLTIILF ILF SQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKV+PMFPPY PQLT*WAITKS*TSSSTKF FLMKNT+SFMGVLLS
Subject    637  GELRRHTPTRTHIKSKFLTIILFFILFVSQRRLNAINCENLLLTADGSVTRFKNSLHLLPKSKVIPMFPPYQPQLT*WAITKS*TSSSTKFTFLMKNTKSFMGVLLS  957

Range 6: 636 to 875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.1 bits(319) 0.0 72/80(90%) 0/80(0%) Plus/Plus
Query        2  EITAHP*KI*YFS*ERQTSSMTMFTIL*WPTMSVGGGTVETSASPSILVISVKNF*IALLIRQR*VINSHS**HLAVSVT  241
                EITAHP*KI*YFS*ER TSSMTMFTIL*WP MSVG GTVETS  PSIL I+VKNF*I LLIRQR*VINSHS**HLAVSVT
Subject    636  EITAHP*KI*YFS*ER*TSSMTMFTIL*WPIMSVGVGTVETSVLPSILAINVKNF*IVLLIRQR*VINSHS**HLAVSVT  875

Range 7: 918 to 959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 11/14(79%) 0/14(0%) Plus/Plus
Query      284  *CESGWAQFVQTHP  325
                *CESGWA  V THP
Subject    918  *CESGWAYVVLTHP  959

Cassava satellite virus isolate Casatv_Br, complete genome

Sequence ID: Length: 1228 Number of Matches: 2

Range 1: 682 to 744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 16/21(76%) 0/21(0%) Plus/Plus
Query       58  VDDDVYDFVMAHYVSWGWYGG  120
                + D+VYDF+MAHYVSWGWY G
Subject    682  IPDEVYDFIMAHYVSWGWYAG  744

Range 2: 760 to 855 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 10/32(31%) 0/32(0%) Plus/Plus
Query      130  ITFDFGNKCKEFLNRVTDPSAVSNKFSQLIAF  225
                +TF+F ++ + F+N+  DP   S  ++ L+ F
Subject    760  VTFNFKSEVRAFVNKYPDPQIASGIYTYLLKF  855