Nucleotide Sequence (584 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
205.4 | 404.4 | 57% | 3.558e-52 | 36% | NC_013470 | |
106.5 | 132.3 | 29% | 2.697e-24 | 38% | NC_021222 | |
121.6 | 216.9 | 27% | 3.759e-30 | 41% | NC_010985 | |
86.8 | 241.3 | 37% | 1.848e-28 | 33% | NC_028498 | |
84.0 | 133.6 | 28% | 1.053e-24 | 31% | NC_030888 |
Alignments
Fusarium graminearum dsRNA mycovirus-4 dsRNA1, complete genome
Range 1: 1779 to 2297 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 97/173(56%) | 0/173(0%) | Plus/Plus |
Query 14 KMTGINWLGDKSFGTTILEDDDRIERQNTEEGCFKGVQYLGKFFRRHTVGEGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALALAPKEEITDMYTIA* 532 ++ G ++ GDKSF T L D E + TEEG F+G+QYLGKF R H + G V +PYRP EET +YYPER G RTY RALGNLLDNYGNP A WLN LLDWLE +++LLP +W DTVQDAARDYTS+LV VP+P RW+FEEW+ L L+ + + Y A* Subject 1779 RIFGQDYTGDKSFATYSLLDMWDEEEEFTEEGKFQGLQYLGKFLRGHKLDLDGRKITVALPYRPCEETFVHMYYPERKSEGVERTYQRALGNLLDNYGNPMMADWLNKLLDWLEPQMELLPTDWLEDTVQDAARDYTSDLVRVPRPLRWTFEEWVHLCLSSDDSDPEWYMYA* 2297
Range 2: 2060 to 2293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 40/78(51%) | 0/78(0%) | Minus/Minus |
Query 295 AMVYISVISSFGARASASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP*LS 528 A +Y S S + +HSSN R G GT T SLV*S AASCTVS S G+ S S+QS S FS A G P*LS Subject 2060 AYIYHSGSESSDDKHKCTHSSNVQRNGRGTRTRSLV*SRAASCTVSSSQSVGNSSICGSSQSSSLFSQSAIIGFP*LS 2293
Range 3: 1871 to 2008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 20/46(43%) | 0/46(0%) | Minus/Minus |
Query 106 RSG*YRRATVSSMGR*GITTSNASPPSPTVWRRKNLPKY*TPLKHP 243 RSG*Y VSS GR G T P ++ R+NLP+Y P P Subject 1871 RSG*YICTKVSSHGRYGKATVIFRPSRSSL*PRRNLPRYCKPWNFP 2008
Range 4: 2058 to 2240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 22/61(36%) | 0/61(0%) | Minus/Minus |
Query 293 PFLKRPPFGLRNNYQLTGIVSGCVLHRVRCPFHW**VQSGLQPVKKSIQPLSSMRITVVIQ 475 P LK P R+ +Q+TG+V +L+R+ P *+ LQPV++ IQP+ I+V+++ Subject 2058 PLLKCPAQWARHTHQVTGVVPRRILYRILQPIGGQ*LHLWLQPVQQLIQPVRHHWISVIVE 2240
Range 5: 2047 to 2241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 24/65(37%) | 0/65(0%) | Plus/Plus |
Query 282 WEISWITTVIRMLLSG*MDFLTGWSPDWTYYQWNGHLTRCRTQPETIPVSW*LFRSPNGGRLRNG 476 W I T I+ +G*+ TGWS W+Y G R R + T PV+W + R+ G LR+G Subject 2047 WAIYSTITEIQ*WRTG*ISCWTGWSHRWSYCPPIGWRIRYRMRRGTTPVTWCVCRAHCAGHLRSG 2241
Cryphonectria parasitica bipartite mycovirus 1 strain 09269 segment RNA1, complete sequence
Range 1: 1463 to 1888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 54/142(38%) | 0/142(0%) | Plus/Plus |
Query 104 EGCFKGVQYLGKFFRRHTVGEGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALALAPKEEITDMYTIA 529 +G F+G+Q+LGK+F G A IPYRP ET RL YPE +TYLRALGN LD GN WL ++WL+ +L P EW + + +RDY++ V VP+P++ F++W L + +E ++ A Subject 1463 QGEFQGLQFLGKYFYLGDYPVGDGAMQQPIPYRPASETYLRLLYPEYGDLPTPQTYLRALGNYLDAAGNRAMEAWLTAFIEWLQPQLSYEPNEWPDNFKRMVSRDYSNVGVEVPRPRQIDFQQWRDLVVLGREAYRRLWRTA 1888
Curvularia thermal tolerance virus RNA1, complete sequence
Range 1: 1545 to 1952 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 57/136(42%) | 0/136(0%) | Plus/Plus |
Query 113 FKGVQYLGKFFRRHTVGEGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALALAPKEEITDMY 520 F+GVQYLGK+FRR V IPYRP +ET RL YPE A +T+LR LGN LD GNP KWL G +DWLE ++ P W S+ + +RDY+ + +P+P+R +E+W L + P+++ ++ Subject 1545 FQGVQYLGKYFRREEYPLDEGTVVVAIPYRPFKETYLRLLYPEYGSLEADQTWLRLLGNYLDAAGNPVTEKWLQGFMDWLEPQVVAPPQVWPSNFQRMVSRDYSGIGIEMPRPERMCYEQWRDLVVLPRDDYRQLW 1952
Range 2: 1473 to 1559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 12/29(41%) | 0/29(0%) | Plus/Plus |
Query 17 MTGINWLGDKSFGTTILEDDDRIERQNTE 103 M GI+W G KSF TT + D ++ Q + Subject 1473 MFGIDWSGKKSFATTAVLDATALQFQGVQ 1559
Penicillium aurantiogriseum bipartite virus 1 segment RNA 1 putative RdRp gene, complete cds
Range 1: 1506 to 1730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 38/75(51%) | 0/75(0%) | Plus/Plus |
Query 113 FKGVQYLGKFFRRHTVGEGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNG 337 F+GVQYLGK+FRR VVIPYRP ET RL YPE +T+LR LGN +D GNP +WL G Subject 1506 FQGVQYLGKYFRREEYPTEDGPVGVVIPYRPFGETFLRLLYPEYGTLDVEQTWLRVLGNYIDAAGNPVTERWLQG 1730
Range 2: 1773 to 1898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 17/42(40%) | 0/42(0%) | Plus/Plus |
Query 380 EWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALALAPKEE 505 +W S+ ++ +RDYT V VP+P+R S+E+W L + P+ E Subject 1773 QWPSNFLRMVSRDYTGVGVEVPRPERMSYEQWRDLVVLPRSE 1898
Range 3: 1440 to 1520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 11/27(41%) | 0/27(0%) | Plus/Plus |
Query 23 GINWLGDKSFGTTILEDDDRIERQNTE 103 GI+W G KSF TT + D ++ Q + Subject 1440 GIDWFGKKSFATTAVVDVTPLQFQGVQ 1520
Range 4: 1697 to 1960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 29/88(33%) | 0/88(0%) | Minus/Minus |
Query 304 YAKGVKSPSTQAQAMVYISVISSFGARASASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP 567 Y G S + + + + S G + H S D R G GT+T + V*S + H S SNQS SP+SH + GLP Subject 1697 YISGS*SAVSSSSSAFQADLYSDLGRTTRSRHCSYDIRSGRGTSTPTPV*SRDTIRRKLEGHWANVASTCGSNQSSSPWSHRSVTGLP 1960
Sclerotium hydrophilum virus 1 isolate ShR#20 putative RNA-dependent RNA polymerase gene, complete cds
Range 1: 1476 to 1703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 38/76(50%) | 0/76(0%) | Plus/Plus |
Query 23 GINWLGDKSFGTTILEDDDRIERQNTEEGCFKGVQYLGKFFRRHTVGEGGDAFDVVIPYRPIEETVARLYYPERVG 250 GINW G KSF T+ D D E G F+G+Q+LGK+F V +A VIPYRPI ET+ RL YPER G Subject 1476 GINWFGSKSFATSAAYDVDDGSALPKEGGPFEGLQFLGKYFCLREVEGDEEAIQAVIPYRPITETLDRLAYPERPG 1703
Range 2: 1743 to 1997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 26/85(31%) | 0/85(0%) | Plus/Plus |
Query 266 TYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALALAPKEEITDMY 520 +Y+RA+GN +D GN +L G L WLE + + W D +Q Y +R+++EEWL L L K+ + ++ Subject 1743 SYMRAVGNYMDGAGNKLTRVFLEGYLTWLEGKGHHEGIRWREDDLQKMTGIYDGVAETFLPARRYTYEEWLDLVLVEKKVVQRVF 1997