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Queries

Nucleotide Sequence (619 letters)

Query ID:ds2016-56_135
Query definition:No definition line
Query length:156
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
62
124
186
248
310
372
434
496
558
619

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
418.5 1348.2 15% 4.024e-115 51% JX559641.1
412.1 1426.2 27% 3.411e-113 47% DQ787959.1
408.4 1441.4 26% 4.358e-112 41% DQ855088.1
373.1 913.3 39% 1.808e-101 39% AF007415.2
373.1 913.3 39% 1.808e-101 39% AY244516.1

Alignments

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 7

Range 1: 2726 to 3259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
418.5 bits(907) 0.0 168/178(94%) 0/178(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                VDK KADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEP+EVLTSFGFAGSGKSHWCQTILRSC+VEKTL+ISPRKVLKDDWVGKISK+HKVVTFEVAFMDDFGCKAIVIDEIGLLPPGY+DLVISVFRPSTL+LLGDPLQSSYHSKRDNV+LEASQED+FSR+KGALPYLCYSHRLPK
Subject   2726  VDKAKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPVEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFRPSTLVLLGDPLQSSYHSKRDNVVLEASQEDVFSRIKGALPYLCYSHRLPK  3259

Range 2: 2770 to 3045 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.8 bits(410) 0.0 80/92(87%) 0/92(0%) Minus/Minus
Query      129  MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP  404
                +ALHPKSSM ATSNVTTLC  EIFPTQSS STFLGLM +VFSTSQLRSMV HQ*LFPDPAKPKEV+TS GSSNSAECIFPLLYFP+ TPVHP
Subject   2770  IALHPKSSMNATSNVTTLCFFEIFPTQSSFSTFLGLMISVFSTSQLRSMVWHQ*LFPDPAKPKEVSTSTGSSNSAECIFPLLYFPKRTPVHP  3045

Range 3: 3088 to 3258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 41/57(72%) 0/57(0%) Minus/Minus
Query      447  FGNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK  617
                FG+L E*QR GSAPF L K SS LASR TLS LL  EL* GSP+R+RVLGRKTE+T+
Subject   3088  FGSL*E*QRYGSAPFILLKTSS*LASRTTLSLLLW*EL*SGSPNRTRVLGRKTEITR  3258

Range 4: 2726 to 3259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.8 bits(456) 0.0 96/178(54%) 0/178(0%) Minus/Minus
Query       85  LW*PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH  618
                LW* V +AE+     +  ED+LL  L DH++ FA++  LK +    QS W ED D ++Y+AG   S LI +Y   P++IHE +LE ++LV L DL  PIIL HLS TND*CF N TTPEYGL PVTFSGPGETKRGQYL+ FLQFSRMHL  +VF ++   A T++AL + I    VH
Subject   2726  LW*SVRIAEIR*RPFYSAEDILLTSLQDHVVSFAVVRALKRVP*QNQSAWTED*DHKIYVAGG*QSDLIDDYRLAPKVIHECNLERHNLVLL*DLSDPIIL*HLSWTND*CFFNITTPEYGLAPVTFSGPGETKRGQYLNWFLQFSRMHLPFIVFSQENPSAPTIKALCQSIRFGFVH  3259

Range 5: 2712 to 3260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 93/183(51%) 0/183(0%) Plus/Plus
Query       71  RRVTTWTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVKP*L*MR*DYSRPAM*TWSSLSSAQVLCFYWAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR  619
                R  + WT+ ++I   +A  V A  +   NT + RCILLNWRN+ RY*PLLVSPGPEKVTG KPYSGVV L+KH*SLV ERC RMIG  RS R TR   SR  SWM  G + *  MR D   PA *   S SS Q L F     F+    A     S R  +R SS  *+  +  SA  T YQR
Subject   2712  RASSGWTKPKRIDWHKAFIVGALGFSWENTIKGRCILLNWRNQLRY*PLLVSPGPEKVTGAKPYSGVVMLKKH*SLVQERC*RMIGSERSQRSTRL*RSRLHSWMTLGARR*SSMRSDCYPPAT*IL*SQSSVQALWFC*GTRFKALTTAKETTWSWRLVRRMSSAE*KGRYRISAILTDYQR  3260

Range 6: 2728 to 3258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
163.3 bits(350) 0.0 90/177(51%) 0/177(0%) Plus/Plus
Query       87  GQDQGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFIS*QTG*CDPRGQPRGHLL*GEGRTSLPLLLTQVTK  617
                GQ Q  *   +LL W+H  +  +IQ  +DAFC*IGGT  G DLFWFRRVRKKSLV NHTPEL* *+N +H*S KGA+G*LG +DL EAQG  +RG  HG*  V   S+R*DR    RL R   L LP K+S S     S+ +  Q     P G   G L   +   ++ LL +Q TK
Subject   2728  GQSQSG*IGTKLL*WVHWGSLGKIQ*REDAFC*IGGTS*GTDLFWFRRVRKKSLVPNHTPEL*C*KNTNH*SKKGAKG*LGRKDLKEAQGCDVRGCIHG*LWVQGDSHR*DRIATPRLHRSCDLSLPSKHSGSVRGPASKLLPQQKRQRGPGG*SGGCLQQNKRGATVSLLFSQTTK  3258

Range 7: 2727 to 2966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 51/80(64%) 0/80(0%) Minus/Minus
Query       86  NHP*APF*D**LMFSQLHNSGVWFDTSDFFRTRRNQKRSIPRSVPPIQQNASFPCCISQEVHLCIHCRSSARAYLP*SCP  325
                NHP APF D**L+F Q HNSGVWF TSDFFRTRRNQKRS+P+ VPPIQQNAS   CI      C H +S    Y    CP
Subject   2727  NHPLAPFLD**LVFFQHHNSGVWFGTSDFFRTRRNQKRSVPQLVPPIQQNASSLYCIFPREPQCTHYKSFVPIYPLWLCP  2966

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 8

Range 1: 2740 to 3273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
412.1 bits(893) 0.0 166/178(93%) 0/178(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                VDK KADRLAQSFYSGCTGVLLGKYNKGKMH+AEL+EP EVLTSFGFAGSGKSHWCQTILRSC+VEKTL+ISPRKVLKDDWVGKISK+HKVVTFEVAFMDDFGCKAIVIDEIGLLPPGY+DLVISVF PSTL+LLGDPLQSSYHSKRDNVILEASQED+FSR+KGALPYLCYSHRLPK
Subject   2740  VDKAKADRLAQSFYSGCTGVLLGKYNKGKMHAAELDEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPSTLVLLGDPLQSSYHSKRDNVILEASQEDVFSRIKGALPYLCYSHRLPK  3273

Range 2: 2784 to 3059 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 83/92(90%) 0/92(0%) Minus/Minus
Query      129  MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP  404
                MALHPKSS+ ATS VTTLC LEIFPTQSSLSTFLGL+  VFSTSQLRSMV*HQ*LFPDPAKPKEVNTS+GSSNSA CIFPLLYFPRSTPVHP
Subject   2784  MALHPKSSINATSKVTTLCFLEIFPTQSSLSTFLGLIIKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRSTPVHP  3059

Range 3: 3102 to 3269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 39/56(70%) 0/56(0%) Minus/Minus
Query      447  GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK  614
                G+LCE*QR*G+APF L K SS LASRITLS LL  EL* GSPS ++VLG  TE+T+
Subject   3102  GSLCE*QR*GNAPFILLKTSS*LASRITLSLLLW*EL*SGSPSSTKVLGWNTEITR  3269

Range 4: 2743 to 3264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 96/174(55%) 0/174(0%) Minus/Minus
Query       88  PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLV  609
                P+*VAE+G+  L+P ED+LL  L +HII FA++  LK I  *    W E  D Q+ I   E SYLI +YG T EIIH+ D + +HLV LRDL +P++LEH  RT +  FL+ TTPEYGLTPVTFSGPGETK  QY   F+QFSR+HLS +V  +K+TCA  VEAL   IC  L+
Subject   2743  PM*VAEIGQRTLYPAEDILLTCLQNHIISFAVVRALKWIP**Y*GAWVEY*DHQINITWWEQSYLIDDYGLTSEIIHKCDFKGHHLVLLRDLSYPVVLEHFPRTYNQSFLDITTPEYGLTPVTFSGPGETKGSQYFSWFIQFSRVHLSFIVLSQKHTCAPAVEALS*SICFGLI  3264

Range 5: 2751 to 3260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 94/170(55%) 0/170(0%) Plus/Plus
Query       96  QGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFIS*QTG*CDPRGQPRGHLL*GEGRTSLPLLLT  605
                Q R*  ++LLQ +HRC S ++Q  KDA  *IG T+  ID  WFRRVRKKSLVSNHTPEL*  EN  + S*+ AQG LG +DL*EAQGG +  R +G*FR+* HS+R*DRT P RL   G L +PPK+ ++T  S S+ +  Q  *CD  G+ RG L   +G  +L LLLT
Subject   2751  QSR*TSSKLLQRVHRCASGKVQ*RKDARG*IG*TN*SIDFLWFRRVRKKSLVSNHTPEL*CRENFDYKS*ESAQGRLGRKDL*EAQGGDL*SRIYG*FRM*GHSHR*DRTAPTRLY*SGDLSIPPKHLSTTRGSTSKLLPQQKR*CDSGGKSRGCLQQDKGCVALSLLLT  3260

Range 6: 2747 to 3274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 94/176(53%) 0/176(0%) Plus/Plus
Query       92  RSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVKP*L*MR*DYSRPAM*TWSSLSSAQVLCFYWAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR  619
                R +QI   +AST  AQV F  +T +ERC  LNW N+ +Y*  LVSPGPEKVTGVKPYSGVV  RK *  VL +CSR  G  RSLR TRW   +S  WMIS V+P*  MR*D S   +  W S  S Q   +Y  I F+    A  IM*  R  KR SS G*R   P SATH G  R
Subject   2747  RPKQID*LKASTAGAQVCFWESTIKERCTRLNWMNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKL*L*VLGKCSRTTG*ERSLRSTRW*PLKSHLWMISDVRP*SSMR*DCSHQVILIW*SQYSTQAP*YY*GIHFKALTTAKEIM*FWRQVKRMSSAG*RVRCPISATHIGCPR  3274

Range 7: 2756 to 2980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 46/75(61%) 0/75(0%) Minus/Minus
Query      101  NHP*APF*D**LMFSQLHNSGVWFDTSDFFRTRRNQKRSIPRSVPPIQQNASFPCCISQEVHLCIHCRSSARAYL  325
                + P*A  *D *  FS+ HNSGVWFDTSDFFRTRRNQ++SI + V PIQ  ASF  C   E HLC  CRS    YL
Subject   2756  SRP*ALS*DL*SKFSRHHNSGVWFDTSDFFRTRRNQRKSILQLVHPIQPRASFLYCTFPEAHLCTRCRSFELVYL  2980

Range 8: 3032 to 3259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 36/76(47%) 0/76(0%) Minus/Minus
Query      377  VSSRGREVRPSP*RRCPLGWPLGSHYPVCYDMNSEGDRPVEAEYLGGRQR*PSLHSRAGVVLSHL*LWLYTRNHP*  604
                VSSR R   P    R PL  P  SHY  C   + E D  V    LGG  R P  ++  G VLSH *LW Y RNHP*
Subject   3032  VSSRDRATHPLSC*RHPLDLPPESHYLFCCGKSFEVDPLVVLRCLGGILRSPDQYNLVGAVLSHR*LWPYIRNHP*  3259

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 8

Range 1: 2740 to 3273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
408.4 bits(885) 0.0 165/178(93%) 0/178(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                VDK+KADRLAQSFYSGCTGVLLGKYNKGKMH+AELEEP EVLTSFGFAGSGKSHWCQTILRSC+VEKTLVISPRKVLKDDW GKISK+HKVVTFEVAFMDDFGCKAIVIDEIGLLPPGY+DLVISVF P+TL+LLGDPLQSSYHSKRDNVILEASQEDIF+R+KGALPYLCYSHR PK
Subject   2740  VDKVKADRLAQSFYSGCTGVLLGKYNKGKMHAAELEEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLVISPRKVLKDDWAGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPNTLVLLGDPLQSSYHSKRDNVILEASQEDIFNRIKGALPYLCYSHRPPK  3273

Range 2: 2784 to 3059 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.2 bits(424) 0.0 83/92(90%) 0/92(0%) Minus/Minus
Query      129  MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP  404
                MALHPKSSM ATS VTTLC  EIFP QSSLSTFLGL+T VFSTSQLRSMV*HQ*LFPDPAKPKEVNTS+GSSNSA CIFPLLYFPRSTPVHP
Subject   2784  MALHPKSSMNATSKVTTLCFFEIFPAQSSLSTFLGLITKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRSTPVHP  3059

Range 3: 3102 to 3269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 41/56(73%) 0/56(0%) Minus/Minus
Query      447  GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK  614
                G LCE*QR*G+APF L K+SSWLASRITLSRLL  EL* GSPS ++V G  TEMT+
Subject   3102  GGLCE*QR*GNAPFILLKISSWLASRITLSRLLW*EL*SGSPSSTKVFGWNTEMTR  3269

Range 4: 2743 to 3264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 97/174(56%) 0/174(0%) Minus/Minus
Query       88  PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLV  609
                P+ VAE+  C L+  ED+LLA   DHI+ FA++  LK I  *    W E  DDQ+ +   E SYL+ + G T E++HE D + ++LV L DLP P+ILEHL RT +  FL+ TTPEYGLTPVTFSGPGETK  QY   FLQFSRMHL  VV  +KYTCA TVEAL   I  DLV
Subject   2743  PMRVAEIR*CTLYSVEDILLACFQDHIVSFAVVRALKWIT**Y*GVWMEH*DDQINVTRWEQSYLVDDNGLTSEVVHERDFKGHYLVLL*DLPCPVILEHLPRTYNQGFLDITTPEYGLTPVTFSGPGETKGSQYFSWFLQFSRMHLPFVVLSQKYTCAPTVEALS*SISFDLV  3264

Range 5: 2745 to 3257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.0 bits(417) 0.0 94/171(55%) 0/171(0%) Plus/Plus
Query       90  QDQGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFIS*QTG*CDPRGQPRGHLL*GEGRTSLPLLL  602
                Q Q  *  ++LLQW+HRCTS ++QQ +DA  *IGGT+  ID  WFRRVRKKSLVSNHTPEL*  EN+ + S*+GAQG*LG EDL EAQG  +  R HG  R+* H +R DRT P  L   GHL +P K+ ++T  S S+ +  QT  CDP  +PRG+L   +G  +L LLL
Subject   2745  QGQS**TSSKLLQWVHRCTSGKVQQREDACG*IGGTN*SIDFLWFRRVRKKSLVSNHTPEL*CRENLGYKS*EGAQG*LGREDLKEAQGSDL*SRVHGRLRM*GHCHRRDRTAPTWLH*SGHLSVPSKHLSTTR*STSKLLPQQTRQCDPGSKPRGYLQQNKGCITLSLLL  3257

Range 6: 2744 to 3274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 95/177(54%) 0/177(0%) Plus/Plus
Query       89  TRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVKP*L*MR*DYSRPAM*TWSSLSSAQVLCFYWAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR  619
                TRS+ I   +ASTV AQVYF  +TT+ RC+ LNWRN+ +Y*  LVSPGPEKVTGVKPYSGVV  RK    VL RCSRM G GRS R TR    +S SW  S V+P    R*D S      WSS  S Q   +Y  I F+    AN  M*S + AKR SS  *R H+  SAT  G  R
Subject   2744  TRSKLID*LKASTVGAQVYFWESTTKGRCMRLNWRNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKPWL*VLGRCSRMTGQGRSQRSTR**PLKSRSWTTSDVRPLSSTR*DCSHLVTLIWSSQCSIQTP*YY*VIHFKALTTANETM*SWKQAKRISSTE*RVHYLISATRIGRPR  3274

Range 7: 2744 to 2980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 52/79(66%) 0/79(0%) Minus/Minus
Query       89  NHP*APF*D**LMFSQLHNSGVWFDTSDFFRTRRNQKRSIPRSVPPIQQNASFPCCISQEVHLCIHCRSSARAYLP*SC  325
                +HP*AP *D *  FS+ HNSGVWFDTSDFFRTRRNQ++SI + VPPIQ +AS  CC   EVHLC HCRS    Y  * C
Subject   2744  SHP*APS*DL*PRFSRHHNSGVWFDTSDFFRTRRNQRKSILQLVPPIQPHASSLCCTFPEVHLCTHCRSFELVYQL*PC  2980

Range 8: 3032 to 3256 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 31/75(41%) 0/75(0%) Minus/Minus
Query      377  SSRGREVRPSP*RRCPLGWPLGSHYPVCYDMNSEGDRPVEAEYLGGRQR*PSLHSRAGVVLSHL*LWLYTRNHP*  601
                SSR + + P    R PLG   GSH  VC   + E D  V    L G  R*P   ++ G VLS  * W Y R+ P*
Subject   3032  SSRDKVMHPLFC*RYPLGLLPGSHCLVCCGKSFEVDHLVVLRCLDGTLR*PDQCNQVGAVLSRR*QWPYIRSRP*  3256

Grapevine virus A isolate PA3, complete genome

Sequence ID: AF007415.2 Length: 7351 Number of Matches: 7

Range 1: 2730 to 3263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
373.1 bits(808) 0.0 150/178(84%) 0/178(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                VDK KADRLAQSFY+G TGVLLGKYNKGKMHS  ++EP EVLT+FGFAGSGKSHWCQTIL+ C VEK LVISPRKVLKDDW  KISKRHKVVTFEVAFMDD+GCK +VIDEIGLLPPGY+DLVI+V RP TL+LLGDPLQS+YHSKRDNV+LEASQEDIF+R+KG LPYLCYSHRLPK
Subject   2730  VDKNKADRLAQSFYNGNTGVLLGKYNKGKMHSEGIDEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVVIDEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQSTYHSKRDNVVLEASQEDIFARIKGQLPYLCYSHRLPK  3263

Range 2: 2774 to 3262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 112/163(69%) 0/163(0%) Minus/Minus
Query      129  FGNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTKXXXXXXXXXXXXXTMALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP  617
                FG+  E*QR GS P  L KMSS LAS+ TLSRLL   L  GSP  + V G  T MTKS  PGGS+PISSIT +L P SSMKATSNVTTLCL EIF  QSSLSTF GL+T  FST Q  SMV*HQ*LFP+PA PK V+TS GSS  +ECI PLLYFPRSTPV P
Subject   2774  FGSRWE*QRYGSCPLILAKMSS*LASKTTLSRLLW*VLCSGSPRSTSVRGLCTAMTKSMYPGGSNPISSITTSLQP*SSMKATSNVTTLCLFEIFEVQSSLSTFRGLITRAFSTEQCLSMV*HQ*LFPEPANPKAVSTSFGSSMPSECILPLLYFPRSTPVFP  3262

Range 3: 2730 to 3263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 69/178(39%) 0/178(0%) Minus/Minus
Query       85  LW*PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH  618
                LW PV VAEV      P +DVLL GL D+++  A++  L+ I Q  Q TW+   +D + +  R    L+ N+     IIHES LEC+H VPL DL  P++ E+L   ++  FL  T  +YGLTPVTF    +++ G++L  F+    +HL+ +V  +K+ C   VE L + + L  VH
Subject   2730  LWEPVGVAEVW*LPFDPGKDVLLTGLQDYVVTLAVVGALQWIPQEHQCTWSMHSND*IDVPRR*QPDLVDNHILAAIIIHESHLECHHFVPL*DL*GPVVFEYLPWADNEGFLYGTVFKYGLTPVTFP*TCKSESGEHLLWFIYAL*VHLAFIVLSQKHPCVPVVETLGKAVSLIFVH  3263

Range 4: 2731 to 3045 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 42/105(40%) 0/105(0%) Plus/Plus
Query       86  WTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVK  400
                WT+ R     + ST   Q  F  +T + RC      N+ R  PL       KVTGVKPY   V  RK       R S+  G  RS RGT+W HSR LSWMI   +
Subject   2731  WTKIRLTALPKVSTTGTQGCFWESTIKARCTQRA*MNQRRCSPLSDLQVQGKVTGVKPYLNTVP*RKPSLSAHGRYSKTTGPQRSQRGTKW*HSRWLSWMIMAAR  3045

Range 5: 3133 to 3264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 20/44(45%) 0/44(0%) Plus/Plus
Query      488  WAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR  619
                W I  +    A+   *S RP KRTS  G +  + TSAT TG QR
Subject   3133  WGIHCKAPTTASVTT*SWRPVKRTSLPGSKGSYHTSATPTGSQR  3264

Range 6: 2840 to 3157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 41/106(39%) 0/106(0%) Plus/Plus
Query      195  TDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFI  512
                T  G   F   R R+KSLVSNHT  L   E+  +   +G Q  L  +DL EAQ G IRG FHG*  +    YR DR   + + R  H C    Y+ + G S ++ +
Subject   2840  TKGGAHRFRICRFREKSLVSNHT*TLFRRESPRYQPTEGTQRRLDLKDLKEAQSGDIRGGFHG*LWLQGCGYRRDRVATSWVHRFSHCCA*TTYTGAPGGSTAKHL  3157

Range 7: 3188 to 3262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/25(44%) 0/25(0%) Plus/Plus
Query      543  GQPRGHLL*GEGRTSLPLLLTQVTK  617
                GQ RGHL   +   ++PLLL    K
Subject   3188  GQSRGHLCQDQRAATIPLLLPPAPK  3262

Grapevine virus A, complete genome

Sequence ID: AY244516.1 Length: 7378 Number of Matches: 7

Range 1: 2727 to 3260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
373.1 bits(808) 0.0 150/178(84%) 0/178(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                VDK KADRLAQSFY+G TGVLLGKYNKGKMHS  ++EP EVLT+FGFAGSGKSHWCQTIL+ C VEK LVISPRKVLKDDW  KISKRHKVVTFEVAFMDD+GCK +VIDEIGLLPPGY+DLVI+V RP TL+LLGDPLQS+YHSKRDNV+LEASQEDIF+R+KG LPYLCYSHRLPK
Subject   2727  VDKNKADRLAQSFYNGNTGVLLGKYNKGKMHSEGIDEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVVIDEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQSTYHSKRDNVVLEASQEDIFARIKGQLPYLCYSHRLPK  3260

Range 2: 2771 to 3259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 112/163(69%) 0/163(0%) Minus/Minus
Query      129  FGNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTKXXXXXXXXXXXXXTMALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP  617
                FG+  E*QR GS P  L KMSS LAS+ TLSRLL   L  GSP  + V G  T MTKS  PGGS+PISSIT +L P SSMKATSNVTTLCL EIF  QSSLSTF GL+T  FST Q  SMV*HQ*LFP+PA PK V+TS GSS  +ECI PLLYFPRSTPV P
Subject   2771  FGSRWE*QRYGSCPLILAKMSS*LASKTTLSRLLW*VLCSGSPRSTSVRGLCTAMTKSMYPGGSNPISSITTSLQP*SSMKATSNVTTLCLFEIFEVQSSLSTFRGLITRAFSTEQCLSMV*HQ*LFPEPANPKAVSTSFGSSMPSECILPLLYFPRSTPVFP  3259

Range 3: 2727 to 3260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 69/178(39%) 0/178(0%) Minus/Minus
Query       85  LW*PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYIAGRE*SYLIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH  618
                LW PV VAEV      P +DVLL GL D+++  A++  L+ I Q  Q TW+   +D + +  R    L+ N+     IIHES LEC+H VPL DL  P++ E+L   ++  FL  T  +YGLTPVTF    +++ G++L  F+    +HL+ +V  +K+ C   VE L + + L  VH
Subject   2727  LWEPVGVAEVW*LPFDPGKDVLLTGLQDYVVTLAVVGALQWIPQEHQCTWSMHSND*IDVPRR*QPDLVDNHILAAIIIHESHLECHHFVPL*DL*GPVVFEYLPWADNEGFLYGTVFKYGLTPVTFP*TCKSESGEHLLWFIYAL*VHLAFIVLSQKHPCVPVVETLGKAVSLIFVH  3260

Range 4: 2728 to 3042 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 42/105(40%) 0/105(0%) Plus/Plus
Query       86  WTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVK  400
                WT+ R     + ST   Q  F  +T + RC      N+ R  PL       KVTGVKPY   V  RK       R S+  G  RS RGT+W HSR LSWMI   +
Subject   2728  WTKIRLTALPKVSTTGTQGCFWESTIKARCTQRA*MNQRRCSPLSDLQVQGKVTGVKPYLNTVP*RKPSLSAHGRYSKTTGPQRSQRGTKW*HSRWLSWMIMAAR  3042

Range 5: 3130 to 3261 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 20/44(45%) 0/44(0%) Plus/Plus
Query      488  WAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGYQR  619
                W I  +    A+   *S RP KRTS  G +  + TSAT TG QR
Subject   3130  WGIHCKAPTTASVTT*SWRPVKRTSLPGSKGSYHTSATPTGSQR  3261

Range 6: 2837 to 3154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 41/106(39%) 0/106(0%) Plus/Plus
Query      195  TDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTTPARLCRLGHLCLPPKYSASTGRSPSEFI  512
                T  G   F   R R+KSLVSNHT  L   E+  +   +G Q  L  +DL EAQ G IRG FHG*  +    YR DR   + + R  H C    Y+ + G S ++ +
Subject   2837  TKGGAHRFRICRFREKSLVSNHT*TLFRRESPRYQPTEGTQRRLDLKDLKEAQSGDIRGGFHG*LWLQGCGYRRDRVATSWVHRFSHCCA*TTYTGAPGGSTAKHL  3154

Range 7: 3185 to 3259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/25(44%) 0/25(0%) Plus/Plus
Query      543  GQPRGHLL*GEGRTSLPLLLTQVTK  617
                GQ RGHL   +   ++PLLL    K
Subject   3185  GQSRGHLCQDQRAATIPLLLPPAPK  3259

Nucleotide Sequence (342 letters)

Query ID:ds2016-56_135
Query definition:No definition line
Query length:156
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
342

Descriptions

Alignments

Grapevine virus A clone HHCS3 16 RNA dependent RNA polymerase (RdRP) gene, partial cds

Sequence ID: KF013689.1 Length: 750 Number of Matches: 6

Range 1: 394 to 612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 72/73(99%) 0/73(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  310
                AFDRSQDEKILDME+EVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH
Subject    394  AFDRSQDEKILDMEIEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  612

Range 2: 397 to 615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.2 bits(291) 0.0 52/73(71%) 0/73(0%) Minus/Minus
Query       95  RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK  313
                ++VPH  E+H+ Q VEEEGSEFTREPHY QITQSTAHHQLE LVFLDHFL PK++IE+F+LHI+Y L+L S++
Subject    397  QMVPHATEYHITQSVEEEGSEFTREPHYSQITQSTAHHQLERLVFLDHFLGPKKKIEYFDLHIQYFLVLRSIE  615

Range 3: 390 to 611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 66/74(89%) 0/74(0%) Minus/Minus
Query       88  WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKAI  309
                WYL+QLNT+LLRVLKKKVPNSPENLI+A+SPRALPII+LSVSYSLIISSGQRKKLSTS SISSIFSSCD SKA+
Subject    390  WYLMQLNTILLRVLKKKVPNSPENLIIARSPRALPIISLSVSYSLIISSGQRKKLSTSISISSIFSSCDRSKAL  611

Range 4: 417 to 611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 48/65(74%) 0/65(0%) Plus/Plus
Query      115  EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP  309
                E+T YG  S QF  LA GNDQGIRD Q DDGQCSG* G+NEVLW*IRNLLLQH E +G+QL+EVP
Subject    417  ENTGYGDRSTQFFSLARGNDQGIRDAQADDGQCSG*SGYNEVLW*IRNLLLQHSE*YGIQLHEVP  611

Range 5: 392 to 610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 49/73(67%) 0/73(0%) Minus/Minus
Query       90  GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  308
                GTS +* P  S C*RRRFRIHQRTSL P+HPEHCPSS * SRIP*SFP+AK +N* L+ PY V S   I ++P
Subject    392  GTSCN*IPYYSEC*RRRFRIHQRTSL*PDHPEHCPSSA*ASRIP*SFPRAKEKN*VLRSPYPVFSRLAIDRKP  610

Range 6: 404 to 610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 51/69(74%) 0/69(0%) Plus/Plus
Query      102  DHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GT  308
                D + R+Y IWR K SI  FG RK*SRNTR SS**WAVLWVIW **GSLVNSEPSSST *  W S  *GT
Subject    404  DRKTRKYWIWRSKYSIFFFGPRK*SRNTRRSS**WAVLWVIWL**GSLVNSEPSSSTL*VIWYSVA*GT  610

Grapevine virus A clone LVCS92 06_4c RNA dependent RNA polymerase (RdRP) gene, partial cds

Sequence ID: KF013731.1 Length: 750 Number of Matches: 6

Range 1: 394 to 612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 71/73(97%) 0/73(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  310
                AFDRSQDEKILDME+EVLNFFLWPEEMI+EYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH
Subject    394  AFDRSQDEKILDMEIEVLNFFLWPEEMIREYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  612

Range 2: 394 to 615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 46/74(62%) 0/74(0%) Minus/Minus
Query       92  RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVKG  313
                +++PH AE H+A GV+EEG EF  EPHYGQ+TQSTAHHQ E  V   HFL P EEIEH   H++YLLIL  +KG
Subject    394  QMIPHAAEDHIA*GVKEEGPEFAGEPHYGQVTQSTAHHQFERFVLPYHFLGP*EEIEHLYFHVQYLLILGPIKG  615

Range 3: 393 to 608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 64/72(89%) 0/72(0%) Minus/Minus
Query       91  YLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA  306
                YL+QL T+LLRVLKKKVPNSPENLIMAKSP+ALPIINLSVSYSLIISSG RKKLSTS S+SSIFSS DLSKA
Subject    393  YLMQLKTILLRVLKKKVPNSPENLIMAKSPKALPIINLSVSYSLIISSGHRKKLSTSISMSSIFSSWDLSKA  608

Range 4: 393 to 608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 47/72(65%) 0/72(0%) Plus/Plus
Query       91  GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEV  306
                GL* + G*EDT +G   AQFLP+A GND+G+R+ Q+DDGQC G* GHNEVL  IR+LLL HP+Q+G+QL+EV
Subject    393  GL**VPG*EDTGHGNRGAQFLPMARGNDKGVRNAQIDDGQCFG*LGHNEVLRRIRDLLL*HPKQYGLQLHEV  608

Range 5: 392 to 607 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 48/72(67%) 0/72(0%) Minus/Minus
Query       90  TSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  305
                TS S* P C GC*RRR RI +RTSLWP+HP+HCPSS *  R P SFP+A GRN*A   P  VSSHP   QRP
Subject    392  TSCS*RPYCLGC*RRRSRIRRRTSLWPSHPKHCPSSI*AFRTPLSFPRAIGRN*APLFPCPVSSHPGTYQRP  607

Range 6: 395 to 607 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 47/71(66%) 0/71(0%) Plus/Plus
Query       93  PLTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*G  305
                PL   RMRRY  W+ +CSISS+G RK*  +T+ S+**WAVLWV WP**GS  NS PSS TP*A W SA *G
Subject    395  PLIGPRMRRYWTWK*RCSISSYGPRK**GSTKRSN**WAVLWVTWP**GSPANSGPSSLTP*AIWSSAA*G  607

Grapevine virus A clone LVCS92 06 11 RNA dependent RNA polymerase (RdRP) gene, partial cds

Sequence ID: KF013737.1 Length: 750 Number of Matches: 6

Range 1: 394 to 612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 71/73(97%) 0/73(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  310
                AFDRSQDEKILDME+EVLNFFLWPEEMI+EYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH
Subject    394  AFDRSQDEKILDMEIEVLNFFLWPEEMIREYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  612

Range 2: 394 to 615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 47/74(64%) 0/74(0%) Minus/Minus
Query       92  RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVKG  313
                +++PH AE H+A GV+EEG EF  EPHYGQ+TQSTAHHQ E  V   HFL P EEIEH   H++YLLIL SV+G
Subject    394  QMIPHAAEDHIA*GVKEEGPEFAGEPHYGQVTQSTAHHQFERFVLPYHFLGP*EEIEHLYFHVQYLLILGSVEG  615

Range 3: 393 to 608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 64/72(89%) 0/72(0%) Minus/Minus
Query       91  YLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA  306
                YL+QL T+LLRVLKKKVPNSPENLIMAKSP+ALPIINLSVSYSLIISSG RKKLSTS S+SSIFSS DLSKA
Subject    393  YLMQLKTILLRVLKKKVPNSPENLIMAKSPKALPIINLSVSYSLIISSGHRKKLSTSISMSSIFSSWDLSKA  608

Range 4: 393 to 608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 48/72(67%) 0/72(0%) Plus/Plus
Query       91  GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEV  306
                GL QI G*EDT +G   AQFLP+A GND+G+R+ Q+DDGQC G* GHNEVL  IR+LLL HP+Q+G+QL+EV
Subject    393  GLRQIPG*EDTGHGNRGAQFLPMARGNDKGVRNAQIDDGQCFG*LGHNEVLRRIRDLLL*HPKQYGLQLHEV  608

Range 5: 392 to 607 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 49/72(68%) 0/72(0%) Minus/Minus
Query       90  TSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  305
                TS S* P C GC*RRR RI +RTSLWP+HP+HCPSS *  R P SFP+A GRN*A   P  VSSHP IC+RP
Subject    392  TSCS*RPYCLGC*RRRSRIRRRTSLWPSHPKHCPSSI*AFRTPLSFPRAIGRN*APLFPCPVSSHPGICRRP  607

Range 6: 395 to 607 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 48/71(68%) 0/71(0%) Plus/Plus
Query       93  PLTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*G  305
                P TD RMRRY  W+ +CSISS+G RK*  +T+ S+**WAVLWV WP**GS  NS PSS TP*A W SA *G
Subject    395  PSTDPRMRRYWTWK*RCSISSYGPRK**GSTKRSN**WAVLWVTWP**GSPANSGPSSLTP*AIWSSAA*G  607

Grapevine virus A clone HHCS2_3c RNA dependent RNA polymerase (RdRP) gene, partial cds

Sequence ID: KF013687.1 Length: 750 Number of Matches: 6

Range 1: 394 to 612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 72/73(99%) 0/73(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  310
                AFDRSQDEKILDME+EVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH
Subject    394  AFDRSQDEKILDMEIEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  612

Range 2: 397 to 615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 53/73(73%) 0/73(0%) Minus/Minus
Query       95  RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK  313
                ++VPH  E+H+ Q VEEEGSEFTREPHY QITQSTAHHQLE LVFLDHFL PK+EIE+F+LHI+Y L+L S++
Subject    397  QMVPHATEYHITQSVEEEGSEFTREPHYSQITQSTAHHQLERLVFLDHFLGPKKEIEYFDLHIQYFLVLRSIE  615

Range 3: 393 to 611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 66/73(90%) 0/73(0%) Minus/Minus
Query       91  WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA  309
                WYL+QLNT+LLRVLKKKVPNSPENLI+A+SPRALPII+LSVSYSLIISSGQRKKLSTS SISSIFSSCD SKA
Subject    393  WYLMQLNTILLRVLKKKVPNSPENLIIARSPRALPIISLSVSYSLIISSGQRKKLSTSISISSIFSSCDRSKA  611

Range 4: 417 to 611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 49/65(75%) 0/65(0%) Plus/Plus
Query      115  EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP  309
                E+T YG  S QFL LA GNDQGIRD Q DDGQCSG* G+NEVLW*IRNLLLQH E +G+QL+EVP
Subject    417  ENTGYGDRSTQFLSLARGNDQGIRDAQADDGQCSG*SGYNEVLW*IRNLLLQHSE*YGIQLHEVP  611

Range 5: 392 to 610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 50/73(68%) 0/73(0%) Minus/Minus
Query       90  GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  308
                GTS +* P  S C*RRRFRIHQRTSL P+HPEHCPSS * SRIP*SFP+AK RN* L+ PY V S   I ++P
Subject    392  GTSCN*IPYYSEC*RRRFRIHQRTSL*PDHPEHCPSSA*ASRIP*SFPRAKERN*VLRSPYPVFSRLAIDRKP  610

Range 6: 404 to 610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 52/69(75%) 0/69(0%) Plus/Plus
Query      102  DHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GT  308
                D + R+Y IWR K SIS FG RK*SRNTR SS**WAVLWVIW **GSLVNSEPSSST *  W S  *GT
Subject    404  DRKTRKYWIWRSKYSISFFGPRK*SRNTRRSS**WAVLWVIWL**GSLVNSEPSSSTL*VIWYSVA*GT  610

Grapevine virus A clone HHCS1_3c RNA dependent RNA polymerase (RdRP) gene, partial cds

Sequence ID: KF013685.1 Length: 750 Number of Matches: 6

Range 1: 394 to 612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 71/73(97%) 0/73(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  310
                AFDRSQDEKILDME+EVLNFFLWPEEMI+EYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH
Subject    394  AFDRSQDEKILDMEIEVLNFFLWPEEMIREYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  612

Range 2: 397 to 615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 51/73(70%) 0/73(0%) Minus/Minus
Query       95  RVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK  313
                ++VPH  E+H+ Q VEEEGSEFTREPHY QITQSTAHHQLE LVF DHFL PK+EIE+ +LHI+Y L+L S++
Subject    397  QMVPHATEYHITQSVEEEGSEFTREPHYSQITQSTAHHQLERLVFPDHFLGPKKEIEYLDLHIQYFLVLRSIE  615

Range 3: 393 to 611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 66/73(90%) 0/73(0%) Minus/Minus
Query       91  WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA  309
                WYL+QLNT+LLRVLKKKVPNSPENLI+A+SPRALPII+LSVSYSLIISSGQRKKLSTS SISSIFSSCD SKA
Subject    393  WYLMQLNTILLRVLKKKVPNSPENLIIARSPRALPIISLSVSYSLIISSGQRKKLSTSISISSIFSSCDRSKA  611

Range 4: 417 to 611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 48/65(74%) 0/65(0%) Plus/Plus
Query      115  EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP  309
                E+T YG    QFL LA GNDQGIRD Q DDGQCSG* G+NEVLW*IRNLLLQH E +G+QL+EVP
Subject    417  ENTGYGDRGTQFLSLARGNDQGIRDAQADDGQCSG*SGYNEVLW*IRNLLLQHSE*YGIQLHEVP  611

Range 5: 392 to 610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 49/73(67%) 0/73(0%) Minus/Minus
Query       90  GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  308
                GTS +* P  S C*RRRFRIHQRTSL P+HPEHCPSS * SRIP*SFP+AK RN*  + PY V S   I ++P
Subject    392  GTSCN*IPYYSEC*RRRFRIHQRTSL*PDHPEHCPSSA*ASRIP*SFPRAKERN*VPRSPYPVFSRLAIDRKP  610

Range 6: 404 to 610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 50/69(72%) 0/69(0%) Plus/Plus
Query      102  DHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GT  308
                D + R+Y IWR + SIS FG RK*S NTR SS**WAVLWVIW **GSLVNSEPSSST *  W S  *GT
Subject    404  DRKTRKYWIWRSRYSISFFGPRK*SGNTRRSS**WAVLWVIWL**GSLVNSEPSSSTL*VIWYSVA*GT  610

Nucleotide Sequence (465 letters)

Query ID:ds2016-56_135
Query definition:No definition line
Query length:156
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
465

Descriptions

Alignments

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 8

Range 1: 562 to 1023 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
373.6 bits(809) 0.0 145/154(94%) 0/154(0%) Plus/Plus
Query        2  CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                CECVFIHDEVQYWSLDEMQRFLGSL+HANRVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGCSKT+DS+SRSWTITKLQT+GAHHIFSAVLGSFLTED+YKYDNFT+INPNDILRGRRGCKPLYLRARMI
Subject    562  CECVFIHDEVQYWSLDEMQRFLGSLEHANRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMI  1023

Range 2: 561 to 1022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
281.5 bits(608) 0.0 127/154(82%) 0/154(0%) Minus/Minus
Query        1  IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHSQ  462
                IILARKY GLHPL PLSISFGL+ VKLSYL  SSVRKLPRTALK+ CAP VCSFVMVQLLD ES VLLHPS+ GFTGCV*APSALPSGY V+LPS KS V*ASGNRL   PASTSAGYT+LYTT  AC  DP+NLCISSKLQY*TSS INTHSQ
Subject    561  IILARKYKGLHPLRPLSISFGLITVKLSYLYESSVRKLPRTALKIWCAPTVCSFVMVQLLDFESIVLLHPSSQGFTGCV*APSALPSGYQVSLPSRKSNV*ASGNRLWLKPASTSAGYTMLYTTLLACSRDPKNLCISSKLQY*TSSWINTHSQ  1022

Range 3: 562 to 1023 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 90/154(58%) 0/154(0%) Minus/Minus
Query        2  DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHAFT  463
                DHP S VQRL PPS+PEYIV V+ GEVVVLV +L  EATQN  ED++RP  LQLC+GPAS L*V+ L  P  P I+ L VG    TI +P  P    IK + L +  L E  I+L RVHN +H  V VLER *+SLH + APVLNLVV+KHAFT
Subject    562  DHPGSQVQRLAPPSSPEYIVRVDHGEVVVLVRVLC*EATQNCTEDMVRPNGLQLCDGPAS*L*VYSLAAP**PRIYRLCVGPFCLTIWIPSKPPIPQIKRVSLWKQTLVETSIHLCRVHNAIHHPVSVLERP*KSLHLI*APVLNLVVDKHAFT  1023

Range 4: 561 to 1022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.4 bits(372) 0.0 86/154(56%) 0/154(0%) Plus/Plus
Query        1  L*MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG*KGV*AAVLTS*DD  462
                L*MRVY RRGSILEL  +AKI R+++AR    V +CVP  G C  + K +  GL++*F G +  +V RW* R  LH T +S+  RV  D  L+V+KLDH+KAAD  GA +LQ  SG*LP+RG +QVRQLH   P+RYTQG KGV A VL S DD
Subject    561  L*MRVYPRRGSILELR*DAKIFRVSRAR*QGGV*HCVPCRGGCWFQPKSVSRGLHV*FAGWEAYLVSRW*GRRGLHTTGKSLATRVQQDYRLKVKKLDHHKAADRWGAPYLQCSSG*LPNRGLVQVRQLHRDQPERYTQGTKGVQAFVLASQDD  1022

Range 5: 563 to 913 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 63/117(54%) 0/117(0%) Plus/Plus
Query        3  VNACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAPFWVA  353
                VNACL TTRFNTGA  +CKD *  SST T  C  LCT  R M  S K   +R   LI    G  G  MV+ + PT N+*I G  G  R  TQS EAGP QSCR  GR  SS  FWVA
Subject    563  VNACLSTTRFNTGA*MRCKDF*GLSSTLTGWCIALCTLQRWMLVSTKVCFQRLTRLICGMGGLLGIQMVRQKGPTHNR*ILGY*GAARL*TQSQEAGPSQSCRPLGRTISSVQFWVA  913

Range 6: 968 to 1024 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 14/19(74%) 0/19(0%) Plus/Plus
Query      408  IYSGVEGGVSRCTYELG*S  464
                IYSG EGG S CT E G*S
Subject    968  IYSGDEGGASLCTCEPG*S  1024

Range 7: 878 to 1021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 32/48(67%) 0/48(0%) Minus/Minus
Query      318  SS*LVSTAAYTPFYP*VYRLG**W*SCRTCRYPRSGSYPERR*RCDAP  461
                SS L ST A TPF P*VYR G*  *SCRTC  P  GSYPE  *R  AP
Subject    878  SSWLASTKACTPFVP*VYRSG*SR*SCRTCTSPLLGSYPELH*RYGAP  1021

Range 8: 563 to 817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 38/85(45%) 0/85(0%) Minus/Minus
Query        3  TRATMDSLVACRLPRLYHRGTMLTFLPLNQRYRPPGIGFDRTLHLPQPGTQYCTRLGLRA*AILGIFAFRPSSSIEPRRE*TRIH  257
                T    D  V CR    YH  T     P NQ  +P    F    H P  GTQ  T    RA   L IFA   SSSIEPRR *TRIH
Subject    563  TLVAKDLPVVCRPLLPYHLDTK*ASHPANQTCKPLETDFG*NQHPPLQGTQCYTPPC*RARETLKIFASHLSSSIEPRRG*TRIH  817

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 8

Range 1: 551 to 1009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
370.8 bits(803) 0.0 147/153(96%) 0/153(0%) Plus/Plus
Query        5  ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                ECVFIHDEVQYWSLDEMQRFLGSLKH  RVVYSIVYPAEVDAGF QSLFPEAYTFDLK+GRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQT+GAHHIFSAVLGSFLTED+YKYDNFTIINPNDILRGRRGCKPLYLRARMI
Subject    551  ECVFIHDEVQYWSLDEMQRFLGSLKHVKRVVYSIVYPAEVDAGFSQSLFPEAYTFDLKDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTIINPNDILRGRRGCKPLYLRARMI  1009

Range 2: 550 to 1011 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
302.6 bits(654) 0.0 132/154(86%) 0/154(0%) Minus/Minus
Query        4  RIILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHS  465
                RIILA +Y GLHPL PLS+SFGLMMVKLSYL* SSVRKLP+TALKM CAP VC+FV+VQLLDSESTVLLHPSN GFTGCV APSALPSGYHVNLPSF+SKV*ASGNRL*  PASTSAGYT+LYTT F CLS+PRNLCISSKLQY TSS*+NTHS
Subject    550  RIILALRYKGLHPLRPLSMSFGLMMVKLSYL*ESSVRKLPKTALKMWCAPTVCNFVIVQLLDSESTVLLHPSNQGFTGCVYAPSALPSGYHVNLPSFRSKV*ASGNRL*LKPASTSAGYTMLYTTLFTCLSEPRNLCISSKLQYWTSS*MNTHS  1011

Range 3: 557 to 1009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.2 bits(448) 0.0 92/151(61%) 0/151(0%) Minus/Minus
Query       11  DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKH  463
                DHP S +QRLTPPSTPEY+V V+DGEVV+LV IL QEATQNG EDV+RP+CLQLC+ PA  L V+  TTP  P +H LRV  L FTI VP *P    I+ +G  E*ALTE  ++L RV+N VH+   + ER+ +SLHF+QAPVL+L+VN+H
Subject    557  DHPGSEIQRLTPPSTPEYVVRVDDGEVVILVRILCQEATQNGTEDVVRPHCLQLCDRPAPRLRVYSFTTP**PRVHRLRVCPLCFTIWVPR*PPVFQIESVGFWE*ALTETSVHLCRVYNAVHNPFHMFERAQKSLHFIQAPVLDLIVNEH  1009

Range 4: 559 to 1011 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 87/151(58%) 0/151(0%) Plus/Plus
Query       13  VYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG*KGV*AAVLTS*DDP  465
                V+SR G ILELG NAKI  +AQ  +   VQ+C+P  G    +SKPIP  L+   + R+VN+VPRW*SRG +HA  E +V RV**+  L V +LD +K A++ GA HLQ R G*LPDRG+LQV QLHHH P+R+TQG KGV*A V  S DDP
Subject    559  VHSR*GPILELG*NAKISGLAQTCEKGCVQHCIPCRGGRWFQSKPIPRSLHFRSERREVNVVPRW*SRGGIHAAGEPLVTRV**NCRL*V*ELDDHKVANSGGAPHLQCRFG*LPDRGFLQV*QLHHHQPERHTQGSKGV*AFVSQSQDDP  1011

Range 5: 864 to 1010 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 35/49(71%) 0/49(0%) Minus/Minus
Query      318  GSS*LVSTAAYTPFYP*VYRLG**W*SCRTCRYPRSGSYPERR*RCDAP  464
                GSS L  T AYTPF P*V R G**W*SC TC+ P SGSYP+R *RC AP
Subject    864  GSSWL*DTKAYTPFDP*VCRSG**W*SCHTCKNPLSGSYPKRH*RCGAP  1010

Range 6: 558 to 809 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 42/84(50%) 0/84(0%) Minus/Minus
Query       12  YYTRATMDSLVACRLPRLYHRGTMLTFLPLNQRYRPPGIGFDRTLHLPQPGTQYCTRLGLRA*AILGIFAFRPSSSIEPRRE*T  263
                YYT  T  S  AC  P LYH GT LT    +++ R  GIGFD     P  G Q CT+     *A   IFAF PSSSI P RE*T
Subject    558  YYTLVTKGSPAACMPPLLYHLGTTLTSRLSDRKCRLLGIGFD*NQRPPLQGIQCCTQPFSHV*ASPEIFAFHPSSSIGPHRE*T  809

Range 7: 552 to 899 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 62/116(53%) 0/116(0%) Plus/Plus
Query        6  NACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAPFWVA  353
                + C FT R NTGAW KCKD   RS+     CT L T  R    SVKAYS++P   I*+  G* GT MVK R  TR++*  G  GVV+  T S  AG  QSC+Q GR TSS PFWVA
Subject    552  SVCSFTMRSNTGAWMKCKDFWARSNM*KGLCTALYTLQRWTLVSVKAYSQKPTLSI*KTGG*RGTQMVKQRGHTRSR*TLGY*GVVKL*TLSLGAGRSQSCKQWGRTTSSVPFWVA  899

Range 8: 957 to 1010 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 14/18(78%) 0/18(0%) Plus/Plus
Query      411  YSGVEGGVSRCTYELG*S  464
                YSGVEGGVS C  E G*S
Subject    957  YSGVEGGVSLCISEPG*S  1010

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 8

Range 1: 562 to 1023 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
368.6 bits(798) 0.0 143/154(93%) 0/154(0%) Plus/Plus
Query        2  CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                CECVFIHDEVQYWSLDEMQRFLGSL+HA RVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGC KT+DS+SRSWTITKLQT+GAHHIFSAVLGSFLTED+YKYDNFT+INPNDILRGRRGCKPLYLRARMI
Subject    562  CECVFIHDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCRKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMI  1023

Range 2: 561 to 1022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
273.2 bits(590) 0.0 124/154(81%) 0/154(0%) Minus/Minus
Query        1  IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHSQ  462
                IILARKY GLHPL PLS+SFGLM VKLSYL  SSVRKLPRTALKM CAP VCSFV+VQLLD ES VL HPS+ GFTGCV APSALPSGY V+LPS +S V*ASGNRL   PASTSAGYT+L TT FAC SDPRNLCISSKLQY TSS +NTHSQ
Subject    561  IILARKYKGLHPLRPLSMSFGLMTVKLSYLYESSVRKLPRTALKMWCAPTVCSFVIVQLLDFESIVLRHPSSQGFTGCVYAPSALPSGYQVSLPSRRSNV*ASGNRLWLKPASTSAGYTML*TTLFACSSDPRNLCISSKLQYWTSSWMNTHSQ  1022

Range 3: 562 to 1023 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 76/154(49%) 0/154(0%) Minus/Minus
Query        2  DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHAFT  463
                DHP S*+QRL P S PEY++ V+DGEVV+LV +L  EATQ+  EDV+RP  LQLC+ PA  L*V+ L  P  P ++ L V     TI +P  P    IK + L E  L E  ++L  VHN +   +C+LER *+ LH + AP+L+LVV++HAFT
Subject    562  DHPGS*IQRLAPSSPPEYVIRVDDGEVVILV*VLC*EATQDCTEDVVRPDGLQLCDSPAPRL*VYSLAAP**PRVYRLCVRPFCLTIWIPSKPPISQIKRVSLWEQTLVETSVHLCWVHNAIDHPLCMLERP*KPLHLI*APILDLVVDEHAFT  1023

Range 4: 561 to 1022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 74/154(48%) 0/154(0%) Plus/Plus
Query        1  L*MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG*KGV*AAVLTS*DD  462
                L*MRV+ RRG ILEL  +AK+ R+A+A K   + +CVP  G    + K +P GL++*    +  +V RW* R  +H T + +  RV  D  L+V +LD++KAA+ RGA HLQ   G*LP+RG +QV QLH H P+ +TQG K V A V TS DD
Subject    561  L*MRVHPRRGPILELR*DAKVSRVARACKEGGL*HCVPSRGGRWFQPKSVPRGLHV*SARWEAYLVSRW*GRRGVHTTGKPLATRVPQDYRLKV*ELDYHKAANRRGAPHLQCSPG*LPNRGLIQV*QLHRHQPE*HTQGAKRVQAFVFTSQDD  1022

Range 5: 563 to 913 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 53/117(45%) 0/117(0%) Plus/Plus
Query        3  VNACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAPFWVA  353
                VNAC  TTR N GA  +CK  * RSS Q      LCT+ R    S K  S+R   LI    G  G  MV+ +  T N+*  G  G  R  TQS  AG  QSC+  GR TSS   WVA
Subject    563  VNACSSTTRSNIGA*MRCKGF*GRSSMQRGWSIALCTQQRWTLVSTKVCSQRLTRLICEMGGLLGIQMVRQKGRTHNR*TLGY*GAARL*TQSLGAGLSQSCKPSGRTTSSVQSWVA  913

Range 6: 971 to 1024 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/18(67%) 0/18(0%) Plus/Plus
Query      411  YSGVEGGVSRCTYELG*S  464
                YSG E G S C YE G*S
Subject    971  YSGGEEGASLCIYEPG*S  1024

Range 7: 878 to 1021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 29/48(60%) 0/48(0%) Minus/Minus
Query      318  SS*LVSTAAYTPFYP*VYRLG**W*SCRTCRYPRSGSYPERR*RCDAP  461
                SS LV+T A T F P*V   G** *SC TC  P  GSYP   *RC AP
Subject    878  SSWLVNTKACTLFAP*VCHSG**R*SCHTCMSPLLGSYPGLH*RCGAP  1021

Range 8: 563 to 793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 30/77(39%) 0/77(0%) Minus/Minus
Query        3  VACRLPRLYHRGTMLTFLPLNQRYRPPGIGFDRTLHLPQPGTQYCTRLGLRA*AILGIFAFRPSSSIEPRRE*TRIH  233
                V C     YH  T       +Q  +P G  F      P  GTQ      L A A L  FA   SS+I PRR *TRIH
Subject    563  VVCTPLLPYHLDTK*ASHLADQTCKPLGTDFG*NQRPPLLGTQCYRPPSLHARATLETFASHLSSNIGPRRG*TRIH  793

Grapevine virus A isolate GTR1SD 1, complete genome

Sequence ID: DQ855081.2 Length: 7352 Number of Matches: 5

Range 1: 568 to 1026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
338.8 bits(733) 0.0 128/153(84%) 0/153(0%) Plus/Plus
Query        5  ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                +C+FIHDEVQYWSLDEMQRFLGSL   NRVVYSI+YPAEV+AG+ QSLFPEAYTFDLKEGR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTITKLQT+GAHH+FSA+ GS+LTED+YKYDNFT+INPNDILRGRRG KPLYLRARMI
Subject    568  QCIFIHDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIRGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMI  1026

Range 2: 570 to 1025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.4 bits(418) 0.0 98/152(64%) 0/152(0%) Minus/Minus
Query        7  IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTH  462
                IILAR+Y+GL PLLP  +S GL+ VKLSYL* SSVR LP  ALK   AP VCSFVMV  L  ES VL H  +HG  G V APSALPSGY + LPS +S V*ASG RL*  PASTSAG  +LYTT F     PR  CISSKLQY TSS I  H
Subject    570  IILARRYNGLLPLLPRRMSLGLITVKLSYL*ESSVR*LPLMALKRW*APTVCSFVMVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSKLQYWTSSCIKMH  1025

Range 3: 571 to 1026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 62/152(41%) 0/152(0%) Minus/Minus
Query        8  DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHA  463
                DH    VQ L  P + + ++ V+  EV++ VGIL      +G E V+    LQLC GP S L +  L   E+P I  L + +LGFTI VP  P+ L IK IG  E AL  PC+Y   V+  +H S+  ++ +*++LH +QAP+L+LV+ K+A
Subject    571  DHSGPEVQWLASPPSSQDVIGVDHSEVIIFVGILR*ITPPDGTEKVVSTNRLQLCYGPCSILGIDRLRASEKPRIDRLGICTLGFTIRVPNHPTLLKIKCIGFWEEALRVPCLYFCWVNYAIHYSIY*IQTT*KALHLIQAPILDLVMYKNA  1026

Range 4: 570 to 953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 50/128(39%) 0/128(0%) Plus/Plus
Query        7  MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLH  390
                M  Y+ RG ILELG +A + R  +  K S V + +P   R RV SKP+P  LY+*  G   ++VP W*SRG ++ T +S+ +++ *D   +   +DH KAA+   +   Q   G L + G+LQ+  LH
Subject    570  MHFYT*RGPILELG*DAALSR*FEFSK*SSV*HNLPSRSRGRVLSKPLPRSLYI*S*GG*GDLVPGW*SRGCIYPTYQSVASQML*DDRFQG*SMDHNKAANGWCSPPFQCHQGELSNGGFLQI**LH  953

Range 5: 653 to 904 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 37/84(44%) 0/84(0%) Plus/Plus
Query       90  ESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAP  341
                E C    T+ +* QG++KA S++PI LI R+ G* GT MVKPR    N  I G S  +R      E GP QSC++    T S P
Subject    653  E*CIA*FTQQK*RQGTLKASSQKPIHLILRRVG*FGTRMVKPRVHIPNLSIRGFSDALRRSIPRIEHGP*QSCKRLVLTTFSVP  904

Grapevine virus A isolate BMo32 1, complete genome

Sequence ID: DQ855087.2 Length: 7352 Number of Matches: 6

Range 1: 568 to 1026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
337.4 bits(730) 0.0 127/153(83%) 0/153(0%) Plus/Plus
Query        5  ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                +C+FIHDEVQYWSLDEMQRFLGSL   NRVVYSI+YPAEV+AG+ QSLFPEAYTFDLK+GR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTITKLQT+GAHH+FSA+ GS+LTED+YKYDNFT+INPNDILRGRRG KPLYLRARMI
Subject    568  QCIFIHDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKDGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIKGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMI  1026

Range 2: 570 to 1025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 97/152(64%) 0/152(0%) Minus/Minus
Query        7  IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTH  462
                IILAR+Y+GL PLLP  IS GL+ VKLSYL* SSVR LP  ALK * AP VCSFV+V  L  ES VL H  +HG  G V APSALPSGY + LPS +S V*ASG RL*  PASTSAG  +LYTT F     PR  CISS+LQY TSS +  H
Subject    570  IILARRYNGLLPLLPRRISLGLITVKLSYL*ESSVR*LPLMALKR**APTVCSFVIVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSRLQYWTSSCMKMH  1025

Range 3: 571 to 1026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 59/152(39%) 0/152(0%) Minus/Minus
Query        8  DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHA  463
                DH    VQ L  P + + I+ V+  EV++ + I       +G + VM    LQLC  P S L V      E+PW+  L V +L FTI VP  P+ L IK IG  E AL  PC+Y   ++  +H S+  +  +*++LH VQAP+L+LVV ++A
Subject    571  DHSGPQVQWLASPPSSQDIIGVDHSEVIIFIRIFC*ITPLDGTKKVMSTNRLQLCYSPCSILGVDCFRASEKPWVDRLGVCTLCFTIWVPNHPAILKIKCIGFWEEALRVPCLYFCWINYAIHYSIY*I*TT*KALHLVQAPILDLVVYENA  1026

Range 4: 570 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 51/135(38%) 0/135(0%) Plus/Plus
Query        7  MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRY  411
                M  ++RRG ILE GR+A + R  +  K S V + +    R RV SKP+P  LY+*  G + ++VPRW*SRG +H T + M +++ *+  L+   +D+ KAA+   +S      G L +R +L +  LH   P+ Y
Subject    570  MHFHTRRGPILEPGRDAALSR*FKFSK*SSV*HNLSSRSRGRVLSKPLPRSLYI*S*GWQGDLVPRW*SRGCIHPTYQPMASQML*NNRLQG*SMDYNKAANGWCSSPF*CHQGELSNRRFL*I**LHCDQPQ*Y  974

Range 5: 653 to 904 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 35/84(42%) 0/84(0%) Plus/Plus
Query       90  ESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITSSAP  341
                E C     + +* QG++KA S++PI LI R  G* GT MVK R  T N   HG S  ++  T   E G  QSC++   IT   P
Subject    653  E*CIA*FIQQK*RQGTLKASSQKPIHLILRMAG*FGTQMVKQRVHTPNLSTHGFSDALKQSTPRIEHGL*QSCKRLVLITFLVP  904

Range 6: 569 to 619 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 11/17(65%) 0/17(0%) Plus/Plus
Query        6  NACLFTTRFNTGAWTKC  56
                NA  +TTR N GAWT+C
Subject    569  NAFSYTTRSNIGAWTRC  619

Nucleotide Sequence (542 letters)

Query ID:ds2016-56_135
Query definition:No definition line
Query length:156
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
55
110
165
220
275
330
385
440
495
542

Descriptions

Alignments

Grapevine virus A isolate KWVMo4 1, complete genome

Sequence ID: DQ855083.2 Length: 7351 Number of Matches: 8

Range 1: 5642 to 6142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
327.3 bits(708) 0.0 131/167(78%) 0/167(0%) Plus/Plus
Query       42  LTQAMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                +T AMS GD QG + S   L EIK+FNVKRNTKDLE+LNK+LHRGD Y+TELIE+VFPRRT+KCV+H+EL+VKDGRVDCDLD+MD+GLD+VDE+EFPLYHVGCIVVALMPHGKNL GKV VEV DTRL+   +RISRS MD+SKP+SACADFPGYFISTTDLLNGYT
Subject   5642  VTAAMSSGDSQGTQGSRSDLQEIKIFNVKRNTKDLESLNKSLHRGDVYDTELIERVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVALMPHGKNLQGKVAVEVVDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTTDLLNGYT  6142

Range 2: 5644 to 5841 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 41/66(62%) 0/66(0%) Minus/Minus
Query       44  CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDIAWV  241
                C THFLV  GNT S++SVS*+SP CR LFR+S+S VFL TLK  IS R+  D + P*+SP DIA V
Subject   5644  CTTHFLVLRGNTLSMSSVS*TSPLCRLLFRLSRSFVFLLTLKILISCRSERDPWVP*ESPDDIAAV  5841

Range 3: 6040 to 6141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 27/34(79%) 0/34(0%) Minus/Minus
Query      440  VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIR  541
                VYPLS+SVVLMK PGKSA AL GLD SM+LL+IR
Subject   6040  VYPLSKSVVLMKYPGKSAQALSGLDKSMRLLEIR  6141

Range 4: 5935 to 5991 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 17/19(89%) 0/19(0%) Minus/Minus
Query      335  PFRFLPWGINATTMQPTWY  391
                P RFLP GINATTMQPTWY
Subject   5935  PCRFLPCGINATTMQPTWY  5991

Range 5: 5636 to 6139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 61/168(36%) 0/168(0%) Minus/Minus
Query       36  VPVE*ISGAYEVTREICTCTYGLGHIHEAP*YPRIWSSESCVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHSLGQTP  539
                V +E +    EV+REI       G +HE  *     + ++ V   + +L +QILAM HQR   A ++V  EL+L++++   +H ++VTI  T+F+ +  +++AL  P  +H LY+  +I IP V +LV +L +L VPL +EDL  +    R L TL+IS  HS    P
Subject   5636  VSIEQVCSTDEVSREIRASA*RFG*VHETS*DSGRSTLQTSVHHFNRHLPLQILAMWHQRDDYAANVVQRELILIYVV*TGVHQVQVTIHATVFDDEFSVHNALLGPSREHPLYEFCIIDIPPVQALVQTLEVLCVPLDIEDLNFL*I*ARSLGTLRIS*RHSRCHPP  6139

Range 6: 5644 to 5835 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 33/64(52%) 0/64(0%) Plus/Plus
Query       44  DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVR  235
                D  YV RRFSG+ GI  RS+ +  LQ +EEH+G R+S+Q     G L* R  REGV   D+EVR
Subject   5644  DSGYVVRRFSGYPGIALRSTGN*DLQCQEEHKGPRESEQEPAQGGCL*YRTHREGVPAKDQEVR  5835

Range 7: 6016 to 6141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 13/42(31%) 0/42(0%) Plus/Plus
Query      416  HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH  541
                H ++     ++K+ HG +Q  K +  FPW+LH+++   Q +H
Subject   6016  HSSEEWSGPNLKKSHGLIQTAKRLRGFPWILHQYYRLAQWIH  6141

Range 8: 5652 to 5987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 44/112(39%) 0/112(0%) Minus/Minus
Query       52  SDSCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*  387
                +DSCH AST   C++ G  GT P        P    HN    L*       RTS S   TPSL    H HP     C +S  P CSS  *R     +   IP  PENL  T*
Subject   5652  ADSCHVASTRRLCSQRGTKGTHPHLRRLDRSPSGPSHNPRDRL*R*VLCAQRTSWSFAGTPSL*VLYHRHPPCAGSCSDSRGPLCSS*H*RS*FPVDLSAIPGYPENLLTT*  5987

Grapevine virus A clone MT25/7 movement protein (MP) and coat protein (CP) genes, complete cds

Sequence ID: EU008561.1 Length: 1523 Number of Matches: 13

Range 1: 73 to 570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
332.4 bits(719) 0.0 136/166(82%) 0/166(0%) Plus/Plus
Query       45  TQAMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                T AMS GD +G KES   L EIKVF+VKRNT+DLETLNK+LHRGD Y+TELIEKVFPRRT+KCVIHKEL+VKDGRVDCDLD+MD+GLD+VDEEEFPLYHVGCIVVALMPHGKNL GKV VEV DTRL+   +RISRS MDMSKP+SACADFPGYFIST+DLLNGYT
Subject     73  TSAMSQGDSRGTKESPSELQEIKVFHVKRNTRDLETLNKSLHRGDVYDTELIEKVFPRRTKKCVIHKELIVKDGRVDCDLDLMDSGLDDVDEEEFPLYHVGCIVVALMPHGKNLQGKVAVEVVDTRLKDGAARISRSLMDMSKPLSACADFPGYFISTSDLLNGYT  570

Range 2: 79 to 567 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 75/163(46%) 0/163(0%) Minus/Minus
Query       51  VPVE*ISGAYEVTREICTCTYGLGHIHEAP*YPRIWSSESCVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS  539
                VP++ I+G  EV R+ICT      H+HEAP*YPR    + CV DL+ +L++++L M HQRHHD  ++V WELL V +I+P +H+I++TI   I + QLLMY A   P  + LLYQL ++ I +V + +  L +  VPLHV+DL  ++   RFL T +IS  HS
Subject     79  VPIQQIAGTDEVPRKICTGA*RF*HVHEAP*YPRCPILQPCVHDLYCHLSLKVLTMWHQRHHDTANVVKWELLFVDVIQPTVHEIQITIHAAILHDQLLMYDAFLGPSREDLLYQLCVVHITSVQAFIEGLKVSCVPLHVKDLNFLQL*GRFLCTPRISLRHS  567

Range 3: 57 to 269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 46/71(65%) 0/71(0%) Minus/Minus
Query       29  CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDIAWVRLPLD  241
                C+THFLV LG TFSI+SVS +SP CR L RVS+SLVFLFT KT IS  +  DSF P +SP DIA V L L+
Subject     57  CMTHFLVLLGKTFSISSVSYTSPLCRLLLRVSRSLVFLFT*KTLISCSSEGDSFVPRESPCDIADVPLCLN  269

Range 4: 471 to 569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 24/33(73%) 0/33(0%) Minus/Minus
Query      443  VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDI  541
                VYP S+S+VLMK PGKSA AL G D+SM+LLDI
Subject    471  VYPFSKSLVLMKYPGKSAQALSGFDMSMRLLDI  569

Range 5: 366 to 419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 14/18(78%) 0/18(0%) Minus/Minus
Query      338  PFRFLPWGINATTMQPTW  391
                P RFLP GI+ATT+QPTW
Subject    366  P*RFLPCGISATTIQPTW  419

Range 6: 206 to 568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 58/121(48%) 0/121(0%) Plus/Plus
Query      178  MIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT  540
                M    S**RR  + G  +A YIRS   +M   IV  ISW  G M  T+RSSH+T    SWWR*C M R    R   RS TQ      RGYQGASW C + *  VQI   TS  P I   GT
Subject    206  MCTTQS**RRSSREGPRNASYIRS*S*RMAAWIVIWISWTVGWMTSTKRSSHFTTLAVSWWR*CHMVRTFRERWQ*RSWTQG*RMGQRGYQGASWTCQNR*APVQIFRGTSSVPAIC*MGT  568

Range 7: 66 to 167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 19/34(56%) 0/34(0%) Plus/Plus
Query       38  ESDPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQ  139
                + D SYV RRF+G+KGI  R++ + GL REEEH+
Subject     66  KGDISYVARRFAGYKGIALRAAGN*GLSREEEHK  167

Range 8: 206 to 409 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 32/68(47%) 0/68(0%) Minus/Minus
Query      178  SCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNH  381
                S H AS PPR ++ G VGTP R  H A  P*   HN   H    APYV R S S    PSLS     H
Subject    206  SYHVASAPPRYSQRGKVGTPLRRRHPAHCP*DPNHNPRGHPSRSAPYV*RISWSFSGRPSLSALCRTH  409

Range 9: 467 to 568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 16/34(47%) 0/34(0%) Minus/Minus
Query      439  CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISA  540
                CT   ++W  *S   NLH  L   T P* SLIS+
Subject    467  CTHSANRWY**STPENLHRRLAVLTCP*GSLISS  568

Range 10: 56 to 163 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 19/36(53%) 0/36(0%) Minus/Minus
Query       28  CSSSR*RPLSHEERVTIPLNPENLRRT*LGSDSH*T  135
                CSSSR RP        IPL P NL  T*L S   *T
Subject     56  CSSSRERP*FPAALRAIPLYPANLLAT*LMSPFA*T  163

Range 11: 444 to 569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 17/42(40%) 0/42(0%) Plus/Plus
Query      416  HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH  541
                HK +     DIKE HG+V+  K +CRF  +LH++    + VH
Subject    444  HKVEGWGSEDIKEPHGHVKTAKRLCRFSGVLHQYQRFAEWVH  569

Range 12: 219 to 293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 13/25(52%) 0/25(0%) Plus/Plus
Query      191  RVDREGVSKADKEVRDT*GAGG*RW  265
                R DREG+ + D+E+R T*GA    W
Subject    219  RADREGLPEKDQEMRHT*GADREGW  293

Range 13: 354 to 404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 11/17(65%) 0/17(0%) Plus/Plus
Query      326  VPTIPCRLHRGGVDAPW  376
                VPT+P  L+RGG DA W
Subject    354  VPTLPRWLYRGGADATW  404

Grapevine virus A isolate GTR1 1, complete genome

Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 10

Range 1: 5661 to 6152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.6 bits(737) 0.0 141/164(86%) 0/164(0%) Plus/Plus
Query       51  AMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                +MS  D Q  K SS  LHEIKVFNVKRNTKDLETLNKALHRGD YETELIEKVFPRRT+KCVIH+ELVVKDGRVDCDLDIMD GL +V+EEE+PLYHVGCIVVALMPHGKNL GKVVVE+KDTRL+ P+SRISRSFMDMSKPISACADFPGYFIST DLLNGYT
Subject   5661  SMSNRDSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIEKVFPRRTKKCVIHRELVVKDGRVDCDLDIMDNGLGDVNEEEYPLYHVGCIVVALMPHGKNLTGKVVVELKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGYT  6152

Range 2: 5653 to 6000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 84/116(72%) 0/116(0%) Minus/Minus
Query       43  RSDSCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGS  390
                +SDSCHGAS PPR N HGIV TPP    Q  YP*YQGHNRPYH  PPA  V  TSLS L TP LSTRSH HP G  PC ES NPWCS+S *RPLSHEERV IPLNPENL  T LGS
Subject   5653  QSDSCHGASVPPRYNPHGIVDTPPHSHPQVHYP*YQGHNRPYHPSPPALCVLHTSLSFLGTPFLSTRSHKHPRGAGPCSESPNPWCSASH*RPLSHEERVMIPLNPENLCWTYLGS  6000

Range 3: 6051 to 6152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 27/34(79%) 0/34(0%) Minus/Minus
Query      441  CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YP  542
                CVP+E*+ GAYEVTREI T TY  GHIHEAP*YP
Subject   6051  CVPIE*VCGAYEVTREISTGTYRFGHIHEAP*YP  6152

Range 4: 5661 to 6029 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 84/123(68%) 0/123(0%) Minus/Minus
Query       51  CVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS  419
                CVL+LH++LA QILAMGHQ HHD T MV*W LLL+H+ K  IHDIKVTIDPTI +HQL +Y+ L CP W+HL YQLGLI IP V  LV SL ILGVPLH++DLYLMK+ *  L* L+IS GH+
Subject   5661  CVLELHNHLASQILAMGHQCHHDTTHMV*WILLLIHIPKSIIHDIKVTIDPTILHHQLSVYYTLLCPSWEHLFYQLGLINIPAVQGLVQSLQILGVPLHIKDLYLMKSV**SL*ILRISVGHT  6029

Range 5: 6046 to 6150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 25/35(71%) 0/35(0%) Minus/Minus
Query      436  CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISAN  540
                CT *V   CL*SNQGN H HL  WTYP*SSLIS +
Subject   6046  CTH*VSLRCL*SNQGNQHRHL*VWTYP*SSLISVS  6150

Range 6: 5654 to 5902 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 61/83(73%) 0/83(0%) Plus/Plus
Query       44  DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVRDT*GAGG*RW*GRL*P*YH  292
                DP YV++RFSGFKGI+TRSS*DKGL  E EHQGF DS+QG  P G L*DRVDR+GV K DKEV +T  AGG  W*GRL*P*YH
Subject   5654  DPKYVQQRFSGFKGIITRSS*DKGL*CEAEHQGFGDSEQGPAPRGCL*DRVDRKGVPKKDKEVCNTQRAGGEGW*GRL*P*YH  5902

Range 7: 5936 to 6151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 49/72(68%) 0/72(0%) Plus/Plus
Query      326  VPTIPCRLHRGGVDAPWXXXXXXXXXXXXXHKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH  541
                V TIPC L+RGG DAPWQES+ QG  G QGHK +R    DIKELHGYVQ +KC+C FPWLLHKH   TQ VH
Subject   5936  VSTIPCGLYRGGTDAPWQESDWQGGCGAQGHKAKRA*LTDIKELHGYVQTYKCLC*FPWLLHKHRRLTQWVH  6151

Range 8: 5945 to 6151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 58/69(84%) 0/69(0%) Minus/Minus
Query      335  VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTWY  541
                VYPLS+S VLMK*PGKSA AL+GLDISMKLLDIRE G  SLVSL+STTTLP RFLPWGI+ATT+QPTWY
Subject   5945  VYPLSKSAVLMK*PGKSAQALIGLDISMKLLDIRELGSFSLVSLSSTTTLPVRFLPWGISATTIQPTWY  6151

Range 9: 5663 to 5851 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 51/63(81%) 0/63(0%) Minus/Minus
Query       53  CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDI  241
                CITHF V LGNTFSINSVS*+SPRCRALFRVSKSLVF FTLKTFIS*R  DD F+ *+S  DI
Subject   5663  CITHFFVLLGNTFSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*ESLLDI  5851

Range 10: 5761 to 6150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 89/130(68%) 0/130(0%) Plus/Plus
Query      151  L*TRLYTVGMIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT  540
                L*TR  T GM MRPS**+RC Q GQ S *Y  SWW +MVGSIVTLISWI  L    RRS HYTM V SWW *CPMARI* AR  W SRTQ  +    GYQGASWICP+ *V V ISLVTS*AP  YS GT
Subject   5761  L*TRPCTAGMFMRPS**KRCSQEGQRSV*YTESWW*RMVGSIVTLISWIMDLGM*MRRSIHYTMWVVSWWH*CPMARI*LARWLWSSRTQG*KSLAHGYQGASWICPNL*VPVLISLVTS*APQTYSMGT  6150

Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene

Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 11

Range 1: 5661 to 6152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 141/164(86%) 0/164(0%) Plus/Plus
Query       51  AMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                +MS    Q  K SS  LHEIKVFNVKRNTKDLETLNKALHRGD YETELIE+VFPRRTRKCVIH+ELVVKDGRVDCDLDIMD GL+ VDE+E+PLYHVGCIVVALMPHGKNL+GKVVVEVKDTRL+ P+SRISRSFMDMSKPISACADFPGYFIST DLLNGYT
Subject   5661  SMSNRGSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDIMDDGLENVDEDEYPLYHVGCIVVALMPHGKNLSGKVVVEVKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGYT  6152

Range 2: 5661 to 6152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
267.3 bits(577) 0.0 110/164(67%) 0/164(0%) Minus/Minus
Query       51  CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YPRIWSSESCVLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS  542
                CVP+E*+ GAYEVTREI TCTY  GHIHEAP*YP     +SCVLDLH++ A  +L MGHQRHHD  DMV*W L+L+H++K  IHDIKVTIDP I  H L +YH LPCPPW+H  YQLGL+ IP V  LV SL ILGVPL+VEDLYLMK+ *R L* L+ S GH+
Subject   5661  CVPIE*VRGAYEVTREISTCTYRFGHIHEAP*YP*AGLFQSCVLDLHYHFAT*VLTMGHQRHHDTADMV*WILILIHILKSIIHDIKVTIDPAILYH*LSVYHTLPCPPWEHPFYQLGLVNIPAVQGLVQSLQILGVPLYVEDLYLMKSV*RSL*ILRTSVGHT  6152

Range 3: 5653 to 5991 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 79/113(70%) 0/113(0%) Minus/Minus
Query       43  SCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGS  381
                S HGAS PPR +RHGIV T P P  Q  +P*YQGHNRP H  P A  VS TSLS+L TP LSTRS  HP G  PC ES NPWCS+ R*RPLSHEERVTIPLNPENL  T LGS
Subject   5653  SYHGASAPPRYSRHGIVDTHPHPHSQVHHP*YQGHNRPCHPLPLALCVSHTSLSSLGTPFLSTRSRKHPRGAGPCSESPNPWCSALR*RPLSHEERVTIPLNPENLCWTYLGS  5991

Range 4: 6046 to 6150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 26/35(74%) 0/35(0%) Minus/Minus
Query      436  CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISAN  540
                CT *V   CL*SNQGN HMHL  WTYP*SSLIS +
Subject   6046  CTH*VSPRCL*SNQGNQHMHL*VWTYP*SSLISVS  6150

Range 5: 5654 to 5902 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 61/83(73%) 0/83(0%) Plus/Plus
Query       44  DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVRDT*GAGG*RW*GRL*P*YH  292
                DP YV++RFSGFKGIVTRSS*DKGLQR+ EHQGF DS+QG  P G L DRVDR+GV K DKEV DT  A G  W GRL*P*YH
Subject   5654  DPKYVQQRFSGFKGIVTRSS*DKGLQRKAEHQGFGDSEQGPAPRGCLRDRVDRKGVPKEDKEVCDTQRASGKGWQGRL*P*YH  5902

Range 6: 6026 to 6151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 30/42(71%) 0/42(0%) Plus/Plus
Query      416  HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH  541
                HKT+R +  DIKELHGYVQ +KCMC FPWLLHKH   TQ VH
Subject   6026  HKTERAQLTDIKELHGYVQTYKCMC*FPWLLHKHRGLTQWVH  6151

Range 7: 5936 to 5986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 14/17(82%) 0/17(0%) Plus/Plus
Query      326  VPTIPCRLHRGGVDAPW  376
                V TIPCRL+RGG DAPW
Subject   5936  VSTIPCRLYRGGADAPW  5986

Range 8: 5761 to 6150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.9 bits(419) 0.0 87/130(67%) 0/130(0%) Plus/Plus
Query      151  L*TRLYTVGMIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT  540
                L*TR  T GM  RPS**+ C QGGQGS *Y  S W +M GSIVTLISW+  L  W R S HYTMS  SWWR*CPM R * A+  WRSRTQD +    GYQGASWICP+ *VHV ISLVTS*AP  YS GT
Subject   5761  L*TRPCTAGMFTRPS**KGCSQGGQGSV*YTES*W*RMAGSIVTLISWMMDLRMWMRMSIHYTMSAVSWWR*CPMVRT*VAKW*WRSRTQD*KSPAHGYQGASWICPNL*VHVLISLVTS*APRTYSMGT  6150

Range 9: 5945 to 6151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 60/69(87%) 0/69(0%) Minus/Minus
Query      335  VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTWY  541
                VYPLS+S VLMK*PGKSAHAL+GLDISMKLLDIRE G  SLVSLTSTTTLP RFLPWGI+ATT+QPTWY
Subject   5945  VYPLSKSAVLMK*PGKSAHALIGLDISMKLLDIRELGSFSLVSLTSTTTLPLRFLPWGISATTIQPTWY  6151

Range 10: 5663 to 5851 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 50/63(79%) 0/63(0%) Minus/Minus
Query       53  CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDI  241
                CITHFLV LGNT SINSVS*+SPRCRALFRVSKSLVF FTLKTFIS*R  DD F+ *+   DI
Subject   5663  CITHFLVLLGNTLSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*EPLLDI  5851

Range 11: 5659 to 5715 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 9/19(47%) 0/19(0%) Plus/Plus
Query       49  KLCPAEIFRV*RNRHAFFM  105
                ++CP E+ R+ R+RH  FM
Subject   5659  QVCPTEVLRIQRDRHTLFM  5715

Grapevine virus A isolate 3138 03, complete genome

Sequence ID: JX559641.1 Length: 7346 Number of Matches: 10

Range 1: 5650 to 6138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
350.7 bits(759) 0.0 144/163(88%) 0/163(0%) Plus/Plus
Query       54  MSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                MS    QG K SS  LHEIKVFNVKRNTKDLETLNKALHRGD YETELIE+VFPRRTRKCVIH+ELVVKDGRVDCDLDI+D+GLD+VDEEE+PLYHVGCIVVALMPHGKNL GKVVVEVKDTRL+GP+SRISRSFMD+SKPISACADFPGYFISTTDLLNGYT
Subject   5650  MSSEGSQGSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDILDSGLDDVDEEEYPLYHVGCIVVALMPHGKNLGGKVVVEVKDTRLKGPSSRISRSFMDLSKPISACADFPGYFISTTDLLNGYT  6138

Range 2: 5639 to 5986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 81/116(70%) 0/116(0%) Minus/Minus
Query       43  RSDSCHGASTPPRCNRHGIVGTPPRPPHQALYP*YQGHNRPYHL*PPAPYVSRTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGS  390
                R D CHGASTPPRCNRHGIV TP RP HQAL P YQ  NRP H   P P VSRTSL + ETPS S  S  HP G  PCLES +PWCS   *RPLSHE RV IPLNPENLR T* GS
Subject   5639  RPDFCHGASTPPRCNRHGIVDTPLRPHHQALNPRYQDRNRPDHPLQPIPCVSRTSLFSSETPSQSILSRKHPRGAGPCLESPDPWCSV*H*RPLSHEARVMIPLNPENLRWT**GS  5986

Range 3: 6037 to 6138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 23/34(68%) 0/34(0%) Minus/Minus
Query      441  CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YP  542
                CVPVE + GAYE+TREI    Y  G IHEAP*YP
Subject   6037  CVPVEQVRGAYEITREIGASAYRFG*IHEAP*YP  6138

Range 4: 5647 to 6012 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 82/122(67%) 0/122(0%) Minus/Minus
Query       51  VLDLHHYLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLMKNA*RFL*TLKISAGHS  416
                +LDLH++LA QI AMGHQRHHDATDMV*W LL VH+IKP I DIK+ IDPTI  +Q  +YHALPC P KH L Q  L+ IP V  LV*SL ILGVP  +EDLYLMK  *  L*TL+  AGHS
Subject   5647  ILDLHYHLAAQIFAMGHQRHHDATDMV*WILLFVHIIKP*IQDIKIAIDPTILYNQFPVYHALPCSPRKHPLNQFCLVNIPAVQGLV*SLQILGVPFDIEDLYLMKRV**SL*TLRTFAGHS  6012

Range 5: 6032 to 6136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/35(60%) 0/35(0%) Minus/Minus
Query      436  CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLISAN  540
                CTR*   WCL*+NQGN    L  W  P*SSLIS +
Subject   6032  CTR*AGPWCL*NNQGNRRKRL*VWINP*SSLISVS  6136

Range 6: 5931 to 6137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 63/69(91%) 0/69(0%) Minus/Minus
Query      335  VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTWY  541
                VYPLSRSVVLMK*PGKSA AL+GLD SMKLLDIRE GP SLVSLTSTTTLP RFLPWGINATTMQPTWY
Subject   5931  VYPLSRSVVLMK*PGKSAQALIGLDKSMKLLDIRELGPFSLVSLTSTTTLPPRFLPWGINATTMQPTWY  6137

Range 7: 5649 to 5837 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 48/63(76%) 0/63(0%) Minus/Minus
Query       53  CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDI  241
                CITHFLV LGNT SINSVS*+SPRCRALFRVS+SLVF  TLKTFIS*   DD F+P*+   DI
Subject   5649  CITHFLVLLGNTLSINSVS*TSPRCRALFRVSRSLVFRLTLKTFIS*SACDDPFEP*EPSLDI  5837

Range 8: 5640 to 5885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 55/82(67%) 0/82(0%) Plus/Plus
Query       44  DPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVRDT*GAGG*RW*GRL*P*Y  289
                DP YV+RRFSGFKGI+TR+S*DKGLQ + EHQG  DSKQG  P G L DR+D EGVS+ +KEVRDT G G   W GRL  *Y
Subject   5640  DPYYVQRRFSGFKGIITRAS*DKGLQCQTEHQGSGDSKQGPAPRGCLRDRID*EGVSEENKEVRDTQGIGCKGWSGRLRS*Y  5885

Range 9: 5922 to 6137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 47/72(65%) 0/72(0%) Plus/Plus
Query      326  VPTIPCRLHRGGVDAPWXXXXXXXXXXXXXHKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH  541
                V TIPCRLHRGGVDAPWQ+S RQG  GGQG++ +  +  DIKELHG++Q +K + RFPWL HKHH   QRVH
Subject   5922  VSTIPCRLHRGGVDAPWQKSGRQGGSGGQGYEAKGAQLTDIKELHGFIQTYKRLRRFPWLFHKHHGPAQRVH  6137

Range 10: 5747 to 6136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 83/130(64%) 0/130(0%) Plus/Plus
Query      151  L*TRLYTVGMIMRPS**RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDSEDQIRGYQGASWICPSP*VHVQISLVTS*APLIYSTGT  540
                L*TR  T GM  R +* R CF+G QGSA*Y  +W  +MVGSI  LISWIQGLM WT+RS HYTMSVASWWR*CPMA+I  AR  WRSR +       GYQGASWI P+ *    ISLV S*AP   STGT
Subject   5747  L*TRPCTAGMFTRQN*LRGCFRGEQGSA*YTGNWL*RMVGSIAILISWIQGLMMWTKRSIHYTMSVASWWR*CPMAKIWAARW*WRSRIRG*RGPAHGYQGASWIYPNL*ALAPISLVIS*APRTCSTGT  6136