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Queries

Nucleotide Sequence (313 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
313

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
215.6 1091.5 48% 1.243e-55 80% NC_004667
79.1 79.1 33% 1.488e-14 32% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 14978 to 15286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.6 bits(469) 0.0 95/103(92%) 0/103(0%) Plus/Plus
Query        3  IDDATLLAPSPVAPAPTEGVGPSEQLDVVALTSDVTELINTRGQGKISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI  311
                IDD +LL PSPV P  T GVGPSEQLDVVALTSDVTELINTRGQGKI FPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI
Subject  14978  IDDTSLLVPSPVVPESTGGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI  15286

Range 2: 14977 to 15288 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.6 bits(462) 0.0 94/104(90%) 0/104(0%) Minus/Minus
Query        2  CIMATIMFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKLILPCPLVLINSVTSDVKATTSSCSDGPTPSVGAGATGLGANNVASSM  313
                CIMATI+FPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGK ILPCPLVLINSVTSDVKATTSSCSDGPTP V +G TGLG NN  SS+
Subject  14977  CIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPPVDSGTTGLGTNNDVSSI  15288

Range 3: 14978 to 15286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.0 bits(417) 0.0 82/103(80%) 0/103(0%) Minus/Minus
Query        3  YHGHYHVPHISWCLTPAFRKNESA*PCVYL*SFRNR*IPLVVDIRFIDRQH*VGKTYLALPPGVDQFRYVRR*SHYV*LL*WTYTFRRRWCYWTWR*QRRIVD  311
                YHGHYH+PHISWCLTPAFRKNESA* CVYL*SFR R IPL+VDIRFIDR H*V KTYL LPP VDQFRYV R*SHY+ LL*WTYT RR W   T  *QRR+V+
Subject  14978  YHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTSRRLWYDRTRY*QRRVVN  15286

Range 4: 14992 to 15288 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 79/99(80%) 0/99(0%) Plus/Plus
Query       17  VVSAKSSSTSAYGRCRSIRATRRSGFNV*RNGIDQHQGAGQDKFSRLSVVDQ*SGYLRRAVFTDYGSSTDKRKATQTRSFERRESNTTRYGEHDSGHDT  313
                VVS +S  T  YGRCRSIRA   SGFNV RNGIDQH GA  D FSRLSV+DQ*SGYLR AVF D GSSTDKRK TQTRSFERRESNTTRYGE+DSGHDT
Subject  14992  VVSTESCRTRVYGRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDT  15288

Range 5: 15042 to 15287 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.3 bits(313) 0.0 67/82(82%) 0/82(0%) Plus/Plus
Query       67  HQSN*T*WL*RLT*RN*STPGGRAR*VFPTQCCRSMKRISTTSGIYRLRKLYR*TQGYADSFFRKAGVKHHEIWGT**WP*Y  312
                HQS+  *WL*R T*RN*ST GG+ R VF TQC RSMKRIST SGI R RKLYR*TQ YADSFFRKAGVKHHEIWG **WP*Y
Subject  15042  HQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*Y  15287

Range 6: 15048 to 15287 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 65/80(81%) 0/80(0%) Minus/Minus
Query       73  VSWPLSCSPYLVVFDSRLSKERVCVALRLSVELP*SVNTARRRYPLH*STTLSRENLSCPAPWC*SIPLRQTLKPLRLVA  312
                VSWPLS SPYLVVFDSRLSKERVCV LRLSVELP S NTA RRYPLH*S TLS EN+S  AP C*SIPLR+TLKPL   A
Subject  15048  VSWPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAA  15287

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 15877 to 16185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.1 bits(168) 0.0 33/103(32%) 0/103(0%) Plus/Plus
Query        3  IDDATLLAPSPVAPAPTEGVGPSEQLDVVALTSDVTELINTRGQGKISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI  311
                +D+ +L+    V   P     P+ +L+ + +   + +L+  RG+     P+ V +I E+DIYDER++   EAL++N+RL  L+ S G   +  D GN +V +I
Subject  15877  VDEGSLVDEPAVTEQPMNVTRPTSELEKLQMVGTLDKLVVERGKAIYDTPEKVFNIRESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLI  16185

Nucleotide Sequence (2006 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
201
402
603
804
1005
1206
1407
1608
1809
2006

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
1576.8 8633.4 44% 0 96% NC_004667
713.6 1628.0 35% 0 28% NC_022072
255.8 783.4 36% 3.153e-121 23% NC_029783
178.4 420.3 17% 1.337e-60 33% NC_005065
227.9 927.9 32% 2.144e-136 23% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 17

Range 1: 4899 to 6902 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1576.8 bits(3435) 0.0 660/668(99%) 0/668(0%) Plus/Plus
Query        2  VSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGVTRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*AYEFWTDLRR  2005
                VSSGWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQG TRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYV IAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTT LVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEV+MMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*AYEFWTDLRR
Subject   4899  VSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVLIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*AYEFWTDLRR  6902

Range 2: 4899 to 6902 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1533.3 bits(3340) 0.0 652/668(98%) 0/668(0%) Minus/Minus
Query        2  PSKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQXXXXXXXXXXXXXSNWPFGQRSYYWFILTANDLFRVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*HRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALSKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGYISSHKQRPVRPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGNTLALWLLVWNTW*FLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRPP**N  2005
                PSKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIG LRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVIS SNWPFGQRSYYWF+LTANDLFRVTLFRSPYGH*GQQVANI*RTPV FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH* RRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFAL KDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDG ISSHKQRPV PLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSG+TLALWLLVWNTW* LIRHAAG*LQHPAYTKDAPSCPERQTDAPFVD VY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPAL+REVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*T+V+DAWVLNCR*DIL* TRPP**N
Subject   4899  PSKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*RRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALGKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGSTLALWLLVWNTW*LLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTRPP**N  6902

Range 3: 4898 to 6442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1156.2 bits(2517) 0.0 507/515(98%) 0/515(0%) Minus/Minus
Query        1  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMNTYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHHIEYVDXXXXXXXXXSDRALPPDFGVIVLVTPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDET  1545
                FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIM TSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTN+VVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAM+TYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SG RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLV PWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSS+EFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHL+EKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR RGHPDET
Subject   4898  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNVVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMSTYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDET  6442

Range 4: 4900 to 6060 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
865.2 bits(1882) 0.0 377/387(97%) 0/387(0%) Plus/Plus
Query        3  FHQGGLVS*RIS*RQLSTQASLTIV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TLSTKGASV*RSGQLGASLV*AGCCS*PAACRMRNHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGRTGRCLWLEI*PSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSLLRAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRRC*WTNSLSHPIAQPPLRLMWEVL  1163
                FHQGGLV *RIS*RQLSTQAS T V*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*T STKGASV*RSGQLGASLV*AGCCS*PAACRMR+HQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRG TGRCLWLEI PSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSL RAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRR *WTNSLSHPIAQPPLRLMWEVL
Subject   4900  FHQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSLPRAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRRR*WTNSLSHPIAQPPLRLMWEVL  6060

Range 5: 5095 to 5790 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
513.8 bits(1115) 0.0 226/232(97%) 0/232(0%) Minus/Minus
Query      198  YLFQL*IRTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RLYF*P*ATPCTSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV*EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVISHPTRRRLTATSCLHQRRAELP*TSN*CALRR*SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT  893
                YLFQL*+RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**R YF*P*ATPC SSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLV SHPTRRRLTATSCLHQRRAELP*TSN*CALRR SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT
Subject   5095  YLFQL*VRTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT  5790

Range 6: 6257 to 6901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
454.2 bits(985) 0.0 211/215(98%) 0/215(0%) Plus/Plus
Query     1360  FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IIQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G*TSSKIAVQKANWNY**RS*NKR*RVLVHDPXXXXXXXXXXXXKRKRNTSDDSA*STGKNIQ*CGIV*DEEGR*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWLLSRYMSV*ILDRPSK  2004
                FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*I+QVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G TSSKIAVQKANWN+**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEE R*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWLLSRYMSV*ILDRPSK
Subject   6257  FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWLLSRYMSV*ILDRPSK  6901

Range 7: 4898 to 5356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
359.4 bits(778) 0.0 150/153(98%) 0/153(0%) Plus/Plus
Query        1  CFIRVASCPRGYLNGN*VPKRL*PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLYRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EITRCSKPATTEPRCYQNNHT  459
                CFIRVASCPRGYLNGN*VPKRL PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKL+RRRAHQFDVQGNSARLWCRQDVAVSRRRVG*E+TRCSKPATTEPRCYQNNHT
Subject   4898  CFIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT  5356

Range 8: 5702 to 6157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
327.8 bits(709) 0.0 150/152(99%) 0/152(0%) Plus/Plus
Query      805  QVGHRSHFSFNTRRLACERPTVRIHS*KRYLY*GQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKYXXXXXXXXXXXXQQCYHS*LQGGKLYRQ  1260
                QVGHRSHFSFNTRRLACERPTVR HS*KRYLY GQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKYGGEEERSEFGRSQQCYHS*LQGGKLYRQ
Subject   5702  QVGHRSHFSFNTRRLACERPTVRTHS*KRYLYQGQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKYGGEEERSEFGRSQQCYHS*LQGGKLYRQ  6157

Range 9: 6494 to 6901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.0 bits(692) 0.0 136/136(100%) 0/136(0%) Minus/Minus
Query     1597  LRRSVQNSYAHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  2004
                LRRSVQNSYAHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI
Subject   6494  LRRSVQNSYAHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  6901

Range 10: 6100 to 6495 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
309.4 bits(669) 0.0 130/132(98%) 0/132(0%) Plus/Plus
Query     1203  WKVSTVLPQLTPGW*TLSSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNHTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRINQ**DRCPKGQ  1598
                WKVSTVLPQLTPGW*TLSSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLN TGVR*MFATCCPQ*P*GERKSVTLKRSLAVR NQ**DRCPKGQ
Subject   6100  WKVSTVLPQLTPGW*TLSSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQ  6495

Range 11: 6112 to 6486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.8 bits(576) 0.0 122/125(98%) 0/125(0%) Minus/Minus
Query     1215  WTAILLLVYPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCMI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTXXXXXXXXXXXLDASCTPHPPKPFYTFP*R*SLPPWS*LW*HC  1589
                WTAILLLV PYR*RPFQGNTFPFPLRSLRTTSSKHLTDTC I*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASC PHPPKPFYTFP*R*SLPPWS*LW*HC
Subject   6112  WTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASCAPHPPKPFYTFP*R*SLPPWS*LW*HC  6486

Range 12: 6589 to 6903 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.9 bits(574) 0.0 104/105(99%) 0/105(0%) Plus/Plus
Query     1692  EKEKKHQ**QCMKHREKHSVMWYCLGRRRPMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVAFEVYERMNFGPTFEG  2006
                EKEKKHQ**QCMKHREKHSVMWYCLGRR+PMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVAFEVYERMNFGPTFEG
Subject   6589  EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVAFEVYERMNFGPTFEG  6903

Range 13: 6619 to 6903 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 94/95(99%) 0/95(0%) Minus/Minus
Query     1722  PFEGRSKIHTLIYLESNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHRPSSS*TIPHH*MFFPVLHA  2006
                PFEGRSKIHTLIYLESNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHR SSS*TIPHH*MFFPVLHA
Subject   6619  PFEGRSKIHTLIYLESNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHRLSSS*TIPHH*MFFPVLHA  6903

Range 14: 5408 to 5650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.3 bits(374) 0.0 79/81(98%) 0/81(0%) Plus/Plus
Query      511  EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDVQGVAYG*KYSRHYRRRC  753
                EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*ED+QGVAYG*KY RHYRRRC
Subject   5408  EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC  5650

Range 15: 4900 to 5049 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 48/50(96%) 0/50(0%) Minus/Minus
Query        3  GYLMDSTPRHQRGMVRLHPSCTSALNNGQRRLGT*LPLRYPLGHEATLMK  152
                GYLMDSTPRHQRGMVRLHPSCTSALN+G+RRLGT*LPLRYPLGHEATLMK
Subject   4900  GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMK  5049

Range 16: 5950 to 6072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 41/41(100%) 0/41(0%) Minus/Minus
Query     1053  YLCPQNFPH*P*WWLCYWVT*RIRPLTSSSYRHLGEHYSTY  1175
                YLCPQNFPH*P*WWLCYWVT*RIRPLTSSSYRHLGEHYSTY
Subject   5950  YLCPQNFPH*P*WWLCYWVT*RIRPLTSSSYRHLGEHYSTY  6072

Range 17: 5839 to 5904 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 22/22(100%) 0/22(0%) Minus/Minus
Query      942  LSVHLSN*WHRGKPVYRRIRTD  1007
                LSVHLSN*WHRGKPVYRRIRTD
Subject   5839  LSVHLSN*WHRGKPVYRRIRTD  5904

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 9

Range 1: 6434 to 7939 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
713.6 bits(1551) 0.0 291/502(58%) 0/502(0%) Plus/Plus
Query      473  KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*A  1978
                K  SE + R  +  STY++W EQD+V KC+WL+AD+P++AL+P    M FE V T T+EDA +EYLKY AIGIER Y A +    IAV  A+GVLK P Q YE LPG   YK   + ++H T+DGLR+ D+PYVF+ EKGIF KG+ +   +   +   +CD +LVFHDA+N  G LK+AR G+VG+ FKSF Y C NAPPGGGKTTM+V++F++ P +T  +TAN+GS++DIN  + K+   L    +ATT+NS+VVNF +R MY R+LVDEVYMMH+GLLQ G FA+GA EG+F+GD++QIPFINREK+FR   +   P+K  + YT ++YRCPLDVC++LS++     EKCY   VVSG   PVVRS  KRPIG+  DVA+I ADVYLC TQ EK +MKR L   G+  PVMTVHEAQGKTF  VVLFRTK+ADDS+F  QPH LV LSRHT SLVYAALSSKL D+VG+ I   +  +VS+ALLHTFAP+GCFR +*A
Subject   6434  KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPYVFLMEKGIFCKGQSLCGGMHGDETALLCDSLLVFHDALNFCGCLKIARLGLVGKEFKSFNYTCVNAPPGGGKTTMMVEKFLEQPRTTTMVTANLGSADDINKKLDKKLEELGLDRAATTINSKVVNFSLRLMYDRILVDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHTSSLVYAALSSKLSDRVGSMIDSTASSTVSNALLHTFAPSGCFRDV*A  7939

Range 2: 5942 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 61/112(54%) 0/112(0%) Plus/Plus
Query        5  SSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRAT  340
                S GWP VL++I+    Y   FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F  +C+         VAS D F+M  GFQR + H+V S  EGRISLTFR+T
Subject   5942  SRGWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST  6277

Range 3: 6796 to 7497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 114/234(49%) 0/234(0%) Minus/Minus
Query      835  *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMNTYGRSLTRKPSCV  1536
                *HFS   ++  DN   TSNG  Y   VY    F G +      N FS FM GI*  SP K PS AP AK P+CSKP CIM TSST+   YI L  KFTTLE  VVA L      +     + MSS LP LAV + V+ G   N ST IVV PPPGGAL  +  K LN  PT P  A F  P K  ASW TS  SH + +S          PL KIPFS  NTYG S + KPS V
Subject   6796  *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKPSCIM*TSSTRIRSYISLKEKFTTLEFIVVAALSRPNSSNFLSNFLLMSSALPKLAVTIVVVRGCSKNFSTIIVVFPPPGGALTQV*LKLLNSLPTKPSLAIFKHPQKFKASWNTSKESHNSAVSSPCMPPHNDCPLQKIPFSIKNTYGISHSLKPSSV  7497

Range 4: 7558 to 7938 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 72/127(57%) 0/127(0%) Minus/Minus
Query     1597  AHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  1977
                AH  RKQP GANV  +A  T       I  PTLS +FELRAA*T E VCL++ T   G  +N  SSA  VLN TT   VFPCAS TVITG + P  FN  FIS FS  V HKYTSA I ATS+ +PI
Subject   7558  AHTSRKQPDGANVCRRALLTVLDAVLSIIDPTLSLSFELRAA*TREEVCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI  7938

Range 5: 6001 to 6276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 48/92(52%) 0/92(0%) Minus/Minus
Query       64  VALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSK  339
                V LNVKL+ PS  E T C  +L*KP  I   S EAT         LH + K A P   TV IGLS G*H S SAWN   PP  Y  TKQWSK
Subject   6001  VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK  6276

Range 6: 6496 to 6768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 49/91(54%) 0/91(0%) Minus/Minus
Query      535  L*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCS  807
                L*  KPG+ S*   G F TP A +TAI L   NALY LS+PIA YF+YS  ASS V V T S  I    G RA  G SA + SH +T SCS
Subject   6496  L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCS  6768

Range 7: 6446 to 7417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 90/324(28%) 0/324(0%) Minus/Minus
Query      485  VYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*HRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALSKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGYISSHKQRPVRPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSL  1456
                V +  LL  + + +  ++LL VYE  L+ +S + +   +  +   L * LMHHV LI++N  IH    +V++  +  G      Q    L+   + V+ T+ +SR        L E  + HR  + +   I   + + L+   + A SSDF    +I G++E Q  +A ++ +   +        ++DT    E++R ++  QA+L  + N +   LV+ +AR   ++L R  Q+TF  S G ++   +R V+PLN    +LQVL   I   P  +  K H      KS + IIS +P+ L + +L  P  +   P   P   L
Subject   6446  VLDQVLLRFEETMLAAEYLLTVYERNLMNISVENSLFGS*SKTPKLQ*TLMHHVDLINKNTVIHQS*REVHNLRIYRGGCSV*AQFLQLLVQLLVDVVGTTQVSRYHRSRTRLLQELFNHHRSFSTSGWGIDTSVVKALEFLTNQAQSSDF*APTEIQGVMEYQQRIA*QRRLVTMHAPTQRLPFAEDTLLHQEHIRYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL  7417

Range 8: 7616 to 7963 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 44/116(38%) 0/116(0%) Minus/Minus
Query     1655  SKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQL  2002
                SK+  K  RSY SKAT R E V++ V Y  R    N   + + QL   S IN+   +  +++  +RL  E  V+  L  KQ +  E FSL  M CHH    S ++  PLH+ LL+L
Subject   7616  SKLPSKLRRSYISKATRRCECVQKGVTYCARCGAVNHRPNPVTQLRT*SSINERRSMP*KSH*SVRLRVEHTVVSALSSKQNNFLESFSLRLMDCHHRFNSSEAI*LPLHLSLLRL  7963

Range 9: 5951 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 36/109(33%) 0/109(0%) Minus/Minus
Query       14  SCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRP  340
                S PE QTD+      + M V PLK   H K + RS+       T+  L  E+C+   + R   V+  +A  +ISVE Y +T+ +LL+  MV+   V     D++*   P
Subject   5951  SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV*HMWP  6277

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 11

Range 1: 6924 to 7685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
255.8 bits(552) 0.0 114/254(45%) 0/254(0%) Plus/Plus
Query     1214  NSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*  1975
                N A T NS ++N + RG     L+DEVY++H+G L   + A    E + +GD+NQIPF NREK+F M  +   P +  + YT+ SYRCP DVCYLLS M     + CYP  V + +D+  +RS+   PI    +    + DV+L  TQ EK+++ R      +  PV T+HEAQGKTF  V L R KKADDS+    PH LVG+SRHTRS VY   +S+L DKVG+  SD S ++VSD +L        FRG+*
Subject   6924  NEARTANSWIINPMKRGSSVLGLIDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHTRSFVYMTYNSRLSDKVGSLCSDVSDKNVSDVVLQGLQRFDRFRGV*  7685

Range 2: 6453 to 6887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 55/145(38%) 0/145(0%) Plus/Plus
Query      758  KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKR  1192
                K P    +S PG   +      ++  ++    + DL YVF   +  F +G+D++ +    D   VCDD++ FHDA+NL   + +AR  ++G++F S + K  N+PPGGGKTT L D F+K  +     TANVGS+EDIN  + KR
Subject   6453  KFPKSYLDSTPGLREHSMLNKNLYVVSESVSTIYDLDYVFSVSRNRFIRGRDINVLCTNNDKFLVCDDLVPFHDALNLKAVISLARTSLIGKNFSSIKMKYVNSPPGGGKTTRLCDTFMKRKDGVVIATANVGSAEDINKEIAKR  6887

Range 3: 5694 to 5894 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 31/67(46%) 0/67(0%) Plus/Plus
Query       14  WPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGG  214
                W   L++IL   +    ++ CLVQ+Y  G  +P H+D+E CY  D+ +LTVNL GKA FS+KC  GG
Subject   5694  WFEGLDEILRKTEGDLSYNQCLVQRYPEGTMIPLHSDNEACYEPDHKVLTVNLTGKALFSVKCNVGG  5894

Range 4: 5907 to 6008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 19/34(56%) 0/34(0%) Plus/Plus
Query      233  VASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  334
                + + ++F+M  GFQRTH HSV S    RISLTFR
Subject   5907  LGNDEWFVMIQGFQRTHKHSVISRSPQRISLTFR  6008

Range 5: 6342 to 6428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/29(41%) 0/29(0%) Plus/Plus
Query      647  EDAVVEYLKYLAIGIERTYRALLMARNIA  733
                E A +EY+ YLA  +   YR+L  A   A
Subject   6342  EAASIEYILYLAYRVYNLYRSLSAAATYA  6428

Range 6: 6150 to 6290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 11/47(23%) 0/47(0%) Plus/Plus
Query      455  TPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMAL  595
                TP+  GKA SE         ST  +    + +   +W+   +P + +
Subject   6150  TPEPSGKANSEIIAASAANFSTLKVMQSYNALSPLKWMYDPDPALCI  6290

Range 7: 7343 to 7678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 44/112(39%) 0/112(0%) Minus/Minus
Query     1633  PRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS  1968
                PRK+          S T   + S   +PTLS   EL    T +RVCL+ PT   G     ESSAFF     T  NVFP AS  V TG         L  S FS  V  K TS
Subject   7343  PRKRSKRCKPCKTTSLTFLSETSEHRLPTLSERRELYVIYTKDRVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS  7678

Range 8: 5705 to 5893 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 26/63(41%) 0/63(0%) Minus/Minus
Query       25  PPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR  213
                PP LH  EK AFP RLTVK   S  * +S S   G   P  Y  T+ W       + + ISS+
Subject   5705  PPTLHFTEKSAFPVRLTVKTL*SGS*QASLSLCKGIIVPSGYR*TRHWLYDRSPSVFLSISSK  5893

Range 9: 6758 to 6889 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 20/44(45%) 0/44(0%) Minus/Minus
Query     1063  SLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGGAL  1194
                +LF  ++ MSS  PT AV +        N S N+VV PPPGG L
Subject   6758  ALFAISLLMSSAEPTFAVAMTTPSLRFMNVSHNLVVFPPPGGEL  6889

Range 10: 6590 to 6724 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 18/45(40%) 0/45(0%) Minus/Minus
Query      895  PTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVK  1029
                P    RA     ++L ASW  + SSHT  LS        SLPL+K
Subject   6590  PIKDVRAKLITALRLSASWNGTKSSHTKNLSLFVHRTLISLPLMK  6724

Range 11: 7101 to 7250 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 16/50(32%) 0/50(0%) Minus/Minus
Query     1391  RVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPV  1540
                RVT F     H GQ++A++  T V +  V +  L+      +H KHL  +
Subject   7101  RVTRFPIQIHHLGQEIAHVRWTSVGYVGVLDLRLIGFDRRVVHDKHLFAI  7250

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 7

Range 1: 4707 to 5399 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.4 bits(383) 0.0 88/231(38%) 0/231(0%) Plus/Plus
Query     1205  EGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYI  1897
                EG+  A T++SRV+N +  G    V +DE +++H G L++     GA E   +GD  QIPFINR + F     V    K  V+  + SYRCP DVC +LS    +    CYP  V  G      RS+S + I +  DV   N DV++  TQ EK  +    + +  +    TVHE QGKT   V + R K A+DS+FT   H +V LSRHT    Y ++S +L D +G  I
Subject   4707  EGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHTVGARYYSISKRLFDGIGREI  5399

Range 2: 3396 to 3530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 24/45(53%) 0/45(0%) Plus/Plus
Query       65  FDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIK  199
                F+  LVQ+Y +GG V +HADDE CY  D+ I+T+N  G+A FSI+
Subject   3396  FNTALVQRYTLGGYVSWHADDEPCYSHDDSIVTINFNGQAVFSIQ  3530

Range 3: 4494 to 4679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 24/62(39%) 0/62(0%) Plus/Plus
Query      989  LIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDIN  1174
                L   +K+ +     E F S      + PPGGGKTT ++  F  +P  T  +TAN+ SS DIN
Subject   4494  LANCMKLGKFYDFEERFSSSVVVLEDTPPGGGKTTNMLTRFRSNPYRTCILTANLESSLDIN  4679

Range 4: 3378 to 3539 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 18/54(33%) 0/54(0%) Minus/Minus
Query       47  LPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLN  208
                +P L+R+ CLP EID  + +I  +A L+I V  + +   + LH + V+ +  +N
Subject   3378  VPTLDRKYCLPIEIDSDNTIIM*VAGLIIRVPRHVTPQRIPLHQSCVEVSETVN  3539

Range 5: 4574 to 4690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 17/39(44%) 0/39(0%) Minus/Minus
Query     1069  FTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGG  1185
                F+ + MS      AV + V  G L N    +VVLPPPGG
Subject   4574  FSCLLMSRLDSKFAVKIHVR*GLLLNLVNMLVVLPPPGG  4690

Range 6: 5216 to 5329 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 18/38(47%) 0/38(0%) Minus/Minus
Query     1714  DKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVI  1827
                D+ T  C  +VN ESSA F L   T   VFP  S TV+
Subject   5216  DRATISCPVIVNTESSAAFSLIILTKGTVFP*IS*TVL  5329

Range 7: 4973 to 5044 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/24(50%) 0/24(0%) Minus/Minus
Query     1471  SG*HFSVPLTVIEDNK*QTSNGHL  1542
                +G*H    L++  DN  QTS GHL
Subject   4973  AG*HKFPRLSLFSDNMTQTSEGHL  5044

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 12

Range 1: 6164 to 6814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.9 bits(491) 0.0 99/217(46%) 0/217(0%) Plus/Plus
Query      758  KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF  1408
                K P  VYE+LPG  VY +   ++ ++ +DG  + DL YVF+   G F  G++++AV++  D + VCDD+LVFHDA+NL G +++A+  +VGE  K+      N+PPGGGKTT LVDE+          TAN GS+ DIN A++ R+   E    A T NS +VN   R      L+DEVYM+H+G+ QL V A G  E + +GD NQIPFINREK F
Subject   6164  KFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRPRPNSHVGLIDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF  6814

Range 2: 5387 to 5716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 49/110(45%) 0/110(0%) Plus/Plus
Query        5  SSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  334
                S GW + L+++   +K    +DHCL+QKY+ G  + FHADDE+CY S   ++TVNL G+A F ++  K G+++   +  GD F+M  G QR   HSV S+DEGR+S+T R
Subject   5387  SQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR  5716

Range 3: 7076 to 7387 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 48/104(46%) 0/104(0%) Plus/Plus
Query     1655  QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFR  1966
                ++++   K  +    K   V+T HEAQGKT+ DVVL R KKADD +F+++PHI+V LSRHTRS+ YA LSSK+ D +   I       VSD LL        FR
Subject   7076  EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHTRSMKYAVLSSKMSDTISKLIDGTYAGKVSDVLLQQLQRNDRFR  7387

Range 4: 6845 to 7087 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 41/81(51%) 0/81(0%) Plus/Plus
Query     1439  KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR  1681
                +E + YT  SYRCP DVCY+LSSMT     K YP  V    D   +RS  K PI T +D     ADVYL MTQ EK++M+R
Subject   6845  EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR  7087

Range 5: 5867 to 6157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 22/97(23%) 0/97(0%) Plus/Plus
Query      464  SGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV  754
                S     S  + R+   +ST     E   + K  W+  ++PV+ ++     +  + +KT  +E   +E++ YLA      +  L  AR++   T + V
Subject   5867  SSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV  6157

Range 6: 6541 to 6924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 49/128(38%) 0/128(0%) Minus/Minus
Query     1135  LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMV  1518
                ++VI+DN * TS GHLY++ VY+  S   +  +  + N FSL +NGI*F+SP    S  P+A T + + P C +YTSS           + T  E  V A    S F SL   A  +S+ LP  AV +
Subject   6541  ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSISPTCEFGRGRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAI  6924

Range 7: 7120 to 7302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 32/61(52%) 0/61(0%) Minus/Minus
Query     1699  LSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSF  1881
                +S   EL  A    RVCLDK T+I G      SSAFF L NTTS  V PCASC V T   F
Subject   7120  VSDILELSTAYFMLRVCLDKATTI*GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLF  7302

Range 8: 6247 to 6438 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 25/64(39%) 0/64(0%) Minus/Minus
Query      841  SPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMNTYGRSLTRKPS  1032
                SPT    A  + P K +AS  TS SS T+  S    TAS   P  K+P     TY +S    PS
Subject   6247  SPTNALLANLTHPRKFIAS*NTSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPS  6438

Range 9: 5455 to 5649 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 26/65(40%) 0/65(0%) Minus/Minus
Query       73  PQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQ  267
                P  I K SP     +   P       K A P + TV     D *H SSSA N    P LYFC KQ
Subject   5455  PGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  5649

Range 10: 6475 to 6513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/13(85%) 0/13(0%) Minus/Minus
Query     1069  SSTNIVVLPPPGG  1107
                SST  VVLPPPGG
Subject   6475  SSTRRVVLPPPGG  6513

Range 11: 6692 to 6814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 17/41(41%) 0/41(0%) Minus/Minus
Query     1286  KHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLI  1408
                K L PV +WYLI +S ++ F  +     *L  +LM H+H I
Subject   6692  KRLFPVDKWYLILISVRDNFFHSHRYHC*LKHSLMQHIHFI  6814

Range 12: 7133 to 7423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 33/97(34%) 0/97(0%) Minus/Minus
Query     1712  SKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHH  2002
                S  G     S  SKA    + ++Q+V +    R  N   D I  L AQ  +   A +  Q+N  MRL  E  +I LL+  QY+IT   +L FM   H
Subject   7133  SSCGAAEKHSIDSKAIIPLQLLQQNVTHFSSVRTINQLRDSIRHLRAQHRVFHAASMP*QSNYNMRLPREDRIICLLQSYQYNITIRLALRFMRR*H  7423

Nucleotide Sequence (1742 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
175
350
525
700
875
1050
1225
1400
1575
1742

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
1162.2 6811.7 28% 0 42% NC_004667
232.5 490.6 23% 2.548e-94 32% NC_022072
77.6 139.1 10% 3.945e-13 26% NC_005065
99.1 226.3 14% 1.298e-19 28% NC_016509
92.7 142.3 8% 1.107e-17 33% NC_029783

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 18

Range 1: 15148 to 16887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1162.2 bits(2530) 0.0 536/580(92%) 0/580(0%) Minus/Plus
Query        2  *SGYLRRAVFTDYGSSTDKRKATQTRSFESRESNTTRYGEHDSGHDTTFRTLLYCKEYKRQRWV*GGDRIRSKEGLLELFGSKGSYIRREIRRVSNQHCAILYEVFYSHHHYATYREENSASVHCPS*ARRPEEVHSVLLRLRTTG*QILPGGRVEG*RNGLRYSD*IS*FKA*RFGDV*HLRKHLII*RWNSDQF*LQFAVIPA*TLVV*K**LMXXXXXXXXTIVW*SHFETLTLDSPL*KSIRRIQRLY*VLINCFPRFLIRKVR**VTM*DRVSGFTTSFRKCVKISTRSARYNVPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*TI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVFL*WCLWIRRCES*VYFVRGESRIRVHRFLETSLRR*RRRWKHTTALTNLISRLKHHGPIVYYRADPFRLVQ**RDSPVHLD  1741
                *SGYLR AVF D GSSTDKRK TQTRSFE RESNTTRYGE+DSGHDTTFRTLLYCKEYKRQR V*GGDRIRSKE LL+LFGSKGSYIRREIR VSNQHCAIL+EVF SHH+Y+TYREENSASV+CPS*ARRPEEVHSVLLRLRTTG*QILPGGRVEG*RNGLRYSD*IS*FKA*RFGDV*HLRKHLII*RWNSDQF*LQFAVIPA*TLVV*K**LMTYTTT YS    *S FET TLDS L*K+ RRIQR Y*VLINCFPR LIRKVR**VTM*DRVSGFT SFRKCVKISTRSARYN PVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY* I*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQV L*W LWIRRCES*VYFV GESRI V RFLE SLRR* RRWK TTA TNLIS LKHHGPIVYY ADPFRLVQ**RDS +H D
Subject  15148  *SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QILPGGRVEG*RNGLRYSD*IS*FKA*RFGDV*HLRKHLII*RWNSDQF*LQFAVIPA*TLVV*K**LMTYTTTIYSITAR*SRFETPTLDSLL*KNTRRIQRSY*VLINCFPRSLIRKVR**VTM*DRVSGFTISFRKCVKISTRSARYNAPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD  16887

Range 2: 15147 to 16349 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
868.9 bits(1890) 0.0 387/401(97%) 0/401(0%) Minus/Plus
Query      540  MKRISTTSGIYRLRKLYR*TQGYADSFFRKPGVKHHEIWGT**WP*YNFSYSTLL*RI*ASKMGIGWRPN*VKRRST*VIRK*GKLY*EGNTTRLQPTLCDPL*GIXXXXXXXXXXXRKFSQRTLP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQWLAL*RLNQLI*GVKVRRRITS*KAFDYLKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNCVVKSFRDTDTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y  1742
                MKRIST SGI R RKLYR*TQ YADSFFRK GVKHHEIWG **WP*YNFSYSTLL*RI*ASK GIGWRPN*VKR ST*VIRK*GKLY*EGNT RLQPTLCDP *GILLTP L YL*RRKFSQR LP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQWLAL*RLNQLI*GVKVRRRITS*KAFDYLKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNC VKSFRDTDTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y
Subject  15147  MKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQWLAL*RLNQLI*GVKVRRRITS*KAFDYLKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNCAVKSFRDTDTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y  16349

Range 3: 15149 to 16276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
808.9 bits(1759) 0.0 358/376(95%) 0/376(0%) Minus/Plus
Query      613  EADIYDERYLPITEALQINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI*LSKDGIQTSFNYSSP*SRRKHW*FESDSL*LTLRQHIRQLCGKVISRH*HWIHRYERVFDEFSVYTKSL*TVFRGF**GR*DDK*RCRIEFQGLQHLFANV*RYQRDQRDTTCRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIERFEVGREQQGEI*GERHTRYLRFIV*LSRV*MK  1740
                EADIYDERYLPITEALQINARLRRLVLSK GSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI*LSKDGIQTSFNYSSP*SRRKHW*FESDSL*LTLRQ+IR L GKV+SRH HWIH YER+ DEFSV+TKSL*TVFRG **GR*DDK*RCRIEFQGLQ+LFANV*RYQRDQRDTT RLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK
Subject  15149  EADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI*LSKDGIQTSFNYSSP*SRRKHW*FESDSL*LTLRQYIR*LRGKVVSRHRHWIHCYERILDEFSVHTKSL*TVFRGL**GR*DDK*RCRIEFQGLQYLFANV*RYQRDQRDTTRRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK  16276

Range 4: 15915 to 16886 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
666.8 bits(1449) 0.0 305/324(94%) 0/324(0%) Plus/Minus
Query        3  SRCTGLSRHYCTRRKGSAR**TIGP*CFNLEMRLVSAVVCFHLLLYLRRLVSRNLCTLILDSPLTKYT*LSQRRIHKHHYKNTCLSFFLSGNYL*LISLLPTLKQXXXXXXXXXXXNFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIVQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGTLYLADLVDIFTHLRKDVVNPETRSYIVTYHLTFLIKNRGKQF  974
                S+C  LSRHYCTRRKGSA+**TIGP*CFN EMRLV AVV FHLL+YLR+L SRNL T ILDSP TKYT*LSQRRIH HHY NTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQI+QYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTG LYLADLVDIFTHLRKD+VNPETRSYIVTYHLTFLIK+RGKQF
Subject  15915  SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGALYLADLVDIFTHLRKDIVNPETRSYIVTYHLTFLIKDRGKQF  16886

Range 5: 16325 to 16888 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
407.0 bits(882) 0.0 177/188(94%) 0/188(0%) Minus/Plus
Query        1  TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIRDNFRLRKRRGKYFYSGVCGSDVAKVRYILSGENRGLGYTDSLKLACVGREGGGNILQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILI  564
                TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSI+DNFRLRKRRGKY+YSG CGSDVAKV+YILSGENRGLG  DSLKL CVGR+GGGN+LQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LI
Subject  16325  TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLI  16888

Range 6: 16389 to 16880 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.3 bits(684) 0.0 148/164(90%) 0/164(0%) Minus/Plus
Query        9  SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLEIISA*EKGEASIFIVVFVDPTLRKLGIFCQGRIED*GTQIP*N*PA*VEKEVETYYSTY*SHL*VKASWTYRLLSCRSFPPCTIMT*QPCT  500
                SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQL+IISA*EKGEASI IVV VDPTLRKL IFC GRIED G  IP*+* A*V+KEVETYYSTY*SHL VKASWTYRLL CRSFPP TIMT*Q  T
Subject  16389  SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFT  16880

Range 7: 15148 to 15465 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.9 bits(478) 0.0 101/106(95%) 0/106(0%) Plus/Minus
Query     1424  KYLIKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIMFPISRGV*LPAFERTSLRSLAFICRASVIGKYRSS*ISAS  1741
                KYL+KDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATI+FPISRGV*LP FERTSLRSLAFICRASVIGKYRSS*ISAS
Subject  15148  KYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISAS  15465

Range 8: 15576 to 15875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.9 bits(443) 0.0 92/100(92%) 0/100(0%) Plus/Minus
Query     1014  FHNGESSVSVSK*LYHTIVEYXXXXXXISYHFQTTSVYAGITANCN*NWSEFHL*IIKCFLRCYTSPNLYALN*LI*SL*RKPLR*PSTRPPGNICYPVV  1313
                FHN ESSV VSK LY  ++EY+VVV*VISYHFQTTSVYAGITANCN*NWSEFHL*IIKCFLRCYTSPNLYALN*LI*SL*RKPLR*PSTRPPGNICYPVV
Subject  15576  FHNSESSVGVSKRLYRAVIEYIVVV*VISYHFQTTSVYAGITANCN*NWSEFHL*IIKCFLRCYTSPNLYALN*LI*SL*RKPLR*PSTRPPGNICYPVV  15875

Range 9: 15149 to 16174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
657.7 bits(1429) 0.0 324/342(95%) 0/342(0%) Plus/Minus
Query      715  NIPHHALWSXXXXXXXXXXXXVKTSKNISVSACPSPKYVSR*PARCXXXXXXXXXHICEKML*TLKXXXXXXXXXXXXXXKTAENSL*GLSINAEFVEYSFITVNPVSVSRNDFTTQLSNMLS*CKS*AITFKLPVFTPGSRRTVIKTGLNSIFR*SNAF*DVIRLRTFTP*IS*FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GSVRWLNFLLYK*RNGGVSKIPHKGSHSVGWRRVVFPS*YSFPYFRITQVDLLLT*FGLHPIPIFDAYILYSRVEYEKLYHGHYHVPHISWCLTPGFRKNESA*PCVYL*SFRNR*IPLVVDIRF  1740
                NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEK+L*TLKLDPTSLLIISPSLLKTAENSL*GLS+NAEFVEYSFITVNPVSVSRNDFT QLSN+LS*CKS*AITFKLPVFTPGSRRTVIKTGLNSIFR*SNAF*DVIRLRTFTP*IS*FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GS RWLNFLLYK* N GVSKIPH+GSHSVGWRR VFPS*YSFPYFRIT VD LLT*FGLHPIP+FDAYILYSRVEYEKLYHGHYH+PHISWCLTP FRKNESA* CVYL*SFR R IPL+VDIRF
Subject  15149  NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEKIL*TLKLDPTSLLIISPSLLKTAENSL*GLSMNAEFVEYSFITVNPVSVSRNDFTAQLSNILS*CKS*AITFKLPVFTPGSRRTVIKTGLNSIFR*SNAF*DVIRLRTFTP*IS*FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRF  16174

Range 10: 16235 to 16570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
256.7 bits(554) 0.0 112/112(100%) 0/112(0%) Plus/Minus
Query      319  GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V  654
                GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V
Subject  16235  GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V  16570

Range 11: 16651 to 16887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 68/79(86%) 0/79(0%) Plus/Minus
Query        2  IKMYRAVTSLLYKAERICTIINDRSMML*PRDEISKCCSMFPPPSLPTQASFKESVYPNPRFSPDKIYLTFATSDPQTP  238
                IK+  AVTSLLY+AERICTIINDRSMML*PRDEIS+CCS FPPP LPTQ SFKES +PNPRFSPDKIYLTFATSDPQ+P
Subject  16651  IKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQSP  16887

Range 12: 15508 to 16104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
386.9 bits(838) 0.0 186/199(93%) 0/199(0%) Plus/Minus
Query      785  HQKIYQCQPARLLNMFLGNRHVVSR*SR*YLYTFAKRCCKP*NSILHRYLSSHLPY*KPRKTVYKDLV*TLNSSNTLS*R*IQCQCLEMTLPHNCRICCRSVSHKLSLSNYQCLRRDHGEL*LKLV*IPSLDNQMLSKMLYVSEPLRLKXXXXXXXXXXXXXXFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAVYAG  1381
                HQKIYQCQPARLLNMFLGNR VVSR*SR*YLYTFAKR CKP*NSILHRYLSSHLPY*+PRKTVYKDLV*TLNSS+ LS*+*IQC+CLE TLP + RI CRSVSHKLSLSNYQCLRRDHGEL*LKLV*IPSLDNQMLSKMLYVSEPLRLKLADLIAIAQAIALAFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAV+AG
Subject  15508  HQKIYQCQPARLLNMFLGNRRVVSR*SR*YLYTFAKRYCKP*NSILHRYLSSHLPY*RPRKTVYKDLV*TLNSSSILS*Q*IQCRCLETTLPRSYRIYCRSVSHKLSLSNYQCLRRDHGEL*LKLV*IPSLDNQMLSKMLYVSEPLRLKLADLIAIAQAIALAFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAVHAG  16104

Range 13: 16607 to 16888 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 77/94(82%) 0/94(0%) Plus/Minus
Query        1  DQDVQGCHVIIVQGGKDLHDNKR*VHDALT*R*D**VL*YVSTSFSTYAG*FQGICVP*SSILP*QNIPNFRNVGSTNTTIKILASPFS*AEII  282
                +Q V+ CHVIIV+GGKDLH+NKR*VHDALT R*D**VL*YVSTS STYA * QGI  P SSILP QNI NFRNVGST TTI ILASPFS*AEII
Subject  16607  NQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII  16888

Range 14: 15147 to 15365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.2 bits(328) 0.0 67/73(92%) 0/73(0%) Plus/Minus
Query     1524  FDLIRSPPYTHL*RLYSLQ*SRVRKVVSWPLSCSPYLVVFDSRLSKERVCVALRLSVELP*SVNTARRRYPLH  1742
                FDLIRSPPYT L*RLYSLQ*SRVRKVVSWPLS SPYLVVFDSRLSKERVCV LRLSVELP S NTA RRYPLH
Subject  15147  FDLIRSPPYTRL*RLYSLQ*SRVRKVVSWPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH  15365

Range 15: 16378 to 16602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 75/75(100%) 0/75(0%) Plus/Minus
Query      287  IDFXXXXXXXXXXXXXIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL  511
                IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL
Subject  16378  IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL  16602

Range 16: 16165 to 16326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 53/54(98%) 0/54(0%) Plus/Minus
Query      563  VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNRSISH  724
                VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSN SISH
Subject  16165  VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH  16326

Range 17: 15426 to 15533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 32/36(89%) 0/36(0%) Plus/Minus
Query     1356  A*LGQCTLAEFSSL*VA*WWCE*NTS*RIAQCWLET  1463
                A*LGQ TLAEFSSL*V * WCE NTS*RIAQCWLET
Subject  15426  A*LGQYTLAEFSSL*VE**WCEQNTS*RIAQCWLET  15533

Range 18: 13935 to 14069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/45(42%) 0/45(0%) Minus/Plus
Query     1318  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  1452
                N VR ++ YFT T IT  +  K+      +A+HGVP +F PY  D
Subject  13935  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  14069

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 16048 to 16593 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.5 bits(501) 0.0 96/182(53%) 0/182(0%) Minus/Plus
Query     1195  EADIYDERYLPITEALQINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNIL  1740
                E+DIYDER++   EAL++N+RL  L+ S     +  D GN +V +IQLF+LYSTVK+ ++   Y++   L  K+V LS+  VR AIL G  D S TN VR++MRY+ +T ++LL+  K+QPAYTA AKHGVPKRF P+CFDFA+LD+RYY  DV+KANA+A A AI+ A  + +G E YN+L
Subject  16048  ESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIRLAKEKGEGKEQYNLL  16593

Range 2: 16752 to 17162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 56/137(41%) 0/137(0%) Minus/Plus
Query      615  TVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*  1025
                T+ + YSTNSAFIL+PYK+F AVF+K G+ I+ DV S FRVY++ + + + I +I+  +R  YL  Y   G +   I   V+ ++   V  +++ +H  W G+  DL WE++     KG+D+LD  +L  +YPGFK*
Subject  16752  TLSEGYSTNSAFILNPYKIFGAVFDKSGKAIATDVASVFRVYDLHNYVVEKIGDIALYKRVTYLCEYDSLGGSVETITVKVVKDDGTIVDVVIDNNHKCWAGLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK*  17162

Range 3: 16599 to 16712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 12/38(32%) 0/38(0%) Minus/Plus
Query     1065  LKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDN  1178
                ++MEF+PV I V +          V + D+    +FDN
Subject  16599  VRMEFKPVTIKVSKVGSGEIVPYNVESIDMVSYALFDN  16712

Range 4: 16407 to 16514 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 27/36(75%) 0/36(0%) Plus/Minus
Query     1274  FNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAVYAG  1381
                F TS  *YLLS  AKSKQ G NLFGTPCLA AV AG
Subject  16407  FITSCV*YLLSRIAKSKQNGRNLFGTPCLAAAV*AG  16514

Range 5: 14853 to 14987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 17/45(38%) 0/45(0%) Minus/Plus
Query     1318  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  1452
                N VR ++ +FT T +T ++  K+ P    +A+HGVP +F  Y  D
Subject  14853  NPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLD  14987

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 8772 to 9062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 33/97(34%) 0/97(0%) Minus/Plus
Query     1219  SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRK  1509
                +Y+EV   I     +    N VR+F+R+ +   I L+I   I+P    +AK+G+P++F PYCFDF++++   +  D + AN +A  +A+KS++ +R+
Subject   8772  NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVNTVTHGVDAVFANLLAKLVALKSSSHKRQ  9062

Range 2: 13578 to 14036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 40/153(26%) 0/153(0%) Minus/Plus
Query     1234  QINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSA  1692
                Q++  + +L     GS   + +   +V + Q+ V+  T  N    D       +  K+   +Y  VRE+I          N +R FMR  + + +  L    I+P    ++K GVP  F PY  D  + D        + A  MA  IA+K A
Subject  13578  QLSPSITKLCNEVWGSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPDAGKDGLSAVLAKMMASTIALKQA  14036

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 15096 to 15524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 50/143(35%) 0/143(0%) Minus/Plus
Query     1192  MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILE  1620
                + + MIQ  + +ST  N+   +  +V+  L  +K  + ++E+R  I      +   N VR +MR+F+ TTI+L+    + P Y  +A+HGV  +F PY FD+ +L   Y   D   A A+A A AI  AN RR G   YN  E
Subject  15096  LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCILLPSYNRRDDKVAAALARAQAIALANKRRAGKTLYNFSE  15524

Range 2: 13685 to 13951 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 29/89(33%) 0/89(0%) Minus/Plus
Query     1246  LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIA  1512
                L+Y +V+ A++ G   ++  N +R + R F+ T + L++  K++P      +HGVPKRF PY FDF       +  D ++A  +A   A
Subject  13685  LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESA  13951

Range 3: 16398 to 16829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 41/144(28%) 0/144(0%) Minus/Plus
Query     1294  DERYLPITEALQINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  1725
                +  YL    A +I   L RL L+        D   ++V +IQ  V Y T  +   K    V      K V L +  VR  I+        TN +R +MR+++  TI L+    ++P     AK G+        FD+ LLD R+
Subject  16398  ESTYLSKDVAKRITLALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF  16829

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 15317 to 15748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 47/144(33%) 0/144(0%) Minus/Plus
Query     1186  IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI  1617
                ++A+IQ  V YSTV++  + D   V  +   +     Y++  + I   +     +N +R +MR+++ TTI+L+    I+P Y   A HGV K + PYCFDF  LD+RY   D   A  +A  +AIK+     + S   N+  +I
Subject  15317  LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNKLRYNQSSNDENLHNTI  15748

Range 2: 14031 to 14225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 24/65(37%) 0/65(0%) Minus/Plus
Query     1258  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMA  1452
                N VR + R F+ + I+     KI+P    LA+HGV KRF  YC D       YY    ++A  +A
Subject  14031  NPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLA  14225

Nucleotide Sequence (1214 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
122
244
366
488
610
732
854
976
1098
1214

Descriptions

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 5358 to 6110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
582.5 bits(1265) 0.0 243/251(97%) 0/251(0%) Minus/Plus
Query        1  KSRGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGL  753
                KS GKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSG+DLIFHSTQDGLRVRDLPYV IAEKGIF KGKDVDAVVALGDNLFVCDDILVFHDAINL+GALKVARCGMVGESFKSFEYKCYNAPPGGGKTT LVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGL
Subject   5358  KSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVLIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGL  6110

Range 2: 4908 to 5303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
318.1 bits(688) 0.0 128/132(97%) 0/132(0%) Minus/Plus
Query      808  GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDERSP  1203
                GWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSV+SIDEGRISLTFRATRRVFGVGRMLQLAGGVSDE+SP
Subject   4908  GWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSP  5303

Range 3: 4898 to 6109 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
837.3 bits(1821) 0.0 366/404(91%) 0/404(0%) Plus/Minus
Query        2  RPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTSIVVLPPPGGAL*HLYSNDLNDSPTIPHRATFSAPIKLIASWKTNISSHTNRLSPKATTASTSLPLIKIPFSAMNTYGKSLTRKPSCVE*KMRSEPDL*TWKPGSDS*T*LGTFKTPSAVVTAMFLAISNALYVLSIPIARYFKYSTTASSEVPVFTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHQIEYVDXXXXXXXXXXDRALPLDFCATVPVVPWFCGCWFGTLGDLSSDTPPANCNILPTPKTRRVALNVKLMRPSSIELTECKCVL*KPQGMRK*SPEATFMTITLPPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSKTRGHPHKT  1213
                RPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSST++VVLPPPGGAL*HLYS DLNDSPT+PHRATFSAPIKL+ASWKT+ISSHTNRLSPKATTASTSLPL+KIPFSAM+TYG+SLTRKPSCVE*KMRS PDL*T KPGSDS*T*LGTF+TPSAVVTA+FLAISNALYVLS+PIARYFKYSTTASSEVPV TTSNVIGV*SG RAITGLSALSHSHFLT*SCSH IEYVDLPLTSLPLPSDRALP DF   V V PW CGCWFGT GD SSDTPPANCNILPTPKTRRVALNVKLMRPSS+E TECKCVL*KPQG+RK*SPEATFMT+TLPPFLHL+EK AFPTRLTV++GLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISS+ RGHP +T
Subject   4898  RPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNVVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMSTYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDET  6109

Range 4: 4899 to 6110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
751.6 bits(1634) 0.0 325/404(80%) 0/404(0%) Plus/Minus
Query        1  ETFQIRISLLHRHIYVLRTSHISRNGGRAIG*LDKFVH*HRRLTATWGSIIAFVFERLK*FTHHTTSSDFQCTHQINSIMENQYIITYEQIVAQSYYRVDIFALDKNTFLSYEYIR*VPHTQAVLC*MKNEI*A*LVNVEAR**FINLIRHFQNTFSSSDGNVPSHKQRPVCSLNTYSQILQVLHDGIFRGPGFYHFKRHWGVVGFESHHWIISPEPLTLLDVILFTPDRVRRPPLDFPTTSLRQSLAP*LLCDRSGSTLVLRLLVWNTW*PLIRHAAG*LQHPAYAEDTPSRPKRQTDAPFVNRAH*MQVRPLKTARHEKIVTRSHVYDHNLTTLPTLN*EVSLPHEIDCQDGVIRWIALLIIGVEWYASTHLVLLH*AMVKDARVLNCRQDIF*DTGPPP*N  1212
                ETFQIRISLLHRHIYVLRTSHISRNGG AIG*L++FVH* RRLTATWGSIIA +FE LK F HH  SSDFQCT+QIN I+ENQYI+ YEQIVAQSY+RVDIFAL K+TF SYEY+R*V HTQAVLC*MKNEI A LVNV+AR**FINLIR+FQNTF  SDGN+ SHKQRPVC LN YSQILQVLHDGIFRGPGF HFK HWGVV F+SHHWIISPEPLTL +VILF P RV RPPLDFPTTSLR SLAP   CD SGSTL L LLVWNTW* LIRHAAG*LQHPAY +D PS P+RQTDAPFV+  +*MQVRPLKTARH+KIVTRS+VYDH+LTTLP L+ EV LPHEID QD VI WIALL+I VEWYASTHLVLLH* +V+DA VLNCR DI * T PP *N
Subject   4899  ETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*RRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALGKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGSTLALWLLVWNTW*LLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTRPP**N  6110

Range 5: 4901 to 6073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
647.1 bits(1406) 0.0 308/391(79%) 0/391(0%) Minus/Plus
Query       38  FMGVAPCLRRYLDGN*VPERL*PLLSAEVQDGWRRTIPRR**GVLSIG*PHPDSQSRGEG*LLN*V*EGW*GYGHKRGFG*LFSHALRFSKDALAFSELY*RRAHQFDV*GDSACLXXXXXXXXXXXXVG*EVTKCSKPAAAKPRYYRNGRTKVKGQGSV*GKW*GSQGEVDVLDLV*TRLRQEV*VAQG**SSDGSQTRLHPNDV*SGKNRDL*RCRRGVLEVSGYRY*ENIQGVAYG*EHCRHYC*RCFESA*SSL*ITTGLPRLQVRLRSHFSFNTRRLACEGLTVCIHS*ERYFYQGQRCRRGSSFGRQSVRM**YIGFP*CY*FDGCTESRSMWYGG*II*VVRIQML*CSPRWR*DDDASGRICQVTQ*HGHHYG*CGKF*GHKY  1210
                F+ VA C R YL+GN*VP+RL PL SAEVQDGWRRTIPR * GVLSI *P+ D QSRGEG LL+*V EGW*G+GHKR FG*LFS+ALRFSKDALAFS+L+ RRAHQFDV G+SA L  RQDVAVSRRRVG*EVT+CSKPA  +PR Y+N  TK+ GQGS+*GKW*GSQGEVD+LD+V TRLR EV*VAQG**SSDGS T LHPND+*SG NRDL*RCRRGVLEVSGYR+*E+IQGVAYG*++CRHY  RC ES *SSL*ITTGL RLQV  RSHFSFNTRRLACE  TV  HS*+RY YQGQRCRRG SFGRQSVRM  Y GFP C+*FD CTESRSM +GG I+*V+RI +L*CSPRWR*DDD SGRI  VTQ*H HHYG*CGKF*GHKY
Subject   4901  FIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHTKIGGQGSI*GKW*GSQGEVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRCSEST*SSL*ITTGLSRLQVGHRSHFSFNTRRLACERPTVRTHS*KRYLYQGQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKY  6073

Range 6: 5140 to 6072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
546.3 bits(1186) 0.0 251/311(81%) 0/311(0%) Plus/Minus
Query       39  YLCPQNFPH*P*WWPCYWVT*QIRPLASSSYRHLGEHYSICIRTT*MIHPPYHIERLSVHPSN**HHGKPIYHHIRTDCRPKLLPRRHLCP**KYLSQL*IHTVSPSHASRLVLNEK*DLSLTCKRGSPVVIHKLD*ALSKHLQQ**RQCS*P*ATPCMFSQYL*PDTSSTPRRHLQRSRFLPLQTSLGCSRV*EPSLDYQP*ATHTS*RNLVHXXXXXXXXP*LPYHFPQTEPCPLTFVRPFR*YLGFAAAGLEHLVTSHPTRRRLTATSCLRRRHAESP*TSN*CALRQ*SSLNASASFENRKA*ENSH  971
                YLCPQNFPH*P*WW CYWVT*+IRPL SSSYRHLGEHYS  IR T* I PP  IERLSVH SN* H GKP+Y  IRTDCRPKL PRRHLCP *+YL QL*+ TV  SHASRLVLNEK*DL  TCKR SPVVIHKLD* LS+HL++**RQ  *P*ATPCM SQ L*PDTSSTPRRHLQRSRF PLQ SLGCS+V EPSLDYQP*ATHTS*RNLV T SS STSP*LPYHFPQ EPCP   V  F *+LG   AGLEHLVTSHPTRRRLTATSCL +R AE P*TSN*CALR+ S LNASASFENRKA*ENSH
Subject   5140  YLCPQNFPH*P*WWLCYWVT*RIRPLTSSSYRHLGEHYSTYIRRT*TIRPPCRIERLSVHLSN*WHRGKPVYRRIRTDCRPKLPPRRHLCPW*RYLFQL*VRTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSH  6072

Range 7: 4900 to 5103 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 49/68(72%) 0/68(0%) Plus/Minus
Query     1008  SYT*LRS*PSPRD*LSGWGYPMDSTPHHRRGMVRLHPSCTSALSNGQRRSGT*LPSRYLLRHGATPIK  1211
                S T* RS PSPRD* S  GY MDSTP H+RGMVRLHPSCTSAL++G+RR GT*LP RY L H AT +K
Subject   4900  SCT*SRSLPSPRD*PSR*GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMK  5103

Range 8: 5287 to 6060 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
437.3 bits(948) 0.0 208/258(81%) 0/258(0%) Minus/Plus
Query       51  RMRGHQVFQTSSRKTKVLPERSHKSQGARLCLREXXXXXXXXXXXXXXVNKITSRSVSGSGLIIQ*WLSNPTTPQ*RLKW*KPGPLKMPSWST*SIWL*VLREHTGRCLWLGTLPSLLLKVF*KCLIKFMNHYRASTFTSQAQISFFIQHKTACV*GTYRMYS*LRKVFLSRAKMSTR**LWATICSYVMIYWFSMMLLI*WVH*KSLDVVWWVNHLSRSNTNAIMLPQVAVRRRC*WTNLSSHPIARPPLRLMWEVL  824
                RMR HQVFQTS+ + KVLPE+SH+++GARL LREVVGKSRGGR TR G NKIT  SVSGSGLIIQ*WL N TTPQ* LKW KPGPLKMPSWST*SIWL* LR HTGRCLWL  LPSL  KVF*K LIKFMNHYRA TFTS+AQISFFIQHKTACV* TYR YS*L+KV L RAKMSTR *LWATICSY  IYWFS M LI* VH*KSLD  WW N LS SN +AIMLPQVAVRRR *WTN  SHPIA+PPLRLMWEVL
Subject   5287  RMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSLPRAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRRR*WTNSLSHPIAQPPLRLMWEVL  6060

Range 9: 4900 to 5241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.9 bits(406) 0.0 89/114(78%) 0/114(0%) Minus/Plus
Query      870  FYGGGPVS*KIS*RQLSTRASLTIA*CRSTRWVEAYHSTPMMRSAIHRITPS*QSISWGRLTSQLSVGRVVRLWS*TWLRVTIFSCLAVFKGRTCIQ*ALLTKGASV*RLGRLG  1211
                F+ GG V *+IS*RQLST+AS T  *CRSTRWVEAYHST M RSAIH+IT S*+SISWGR TS+LS GRVVR WS*T LRVTIF CLAVFKGRTCIQ*   TKGASV*R G+LG
Subject   4900  FHQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLG  5241

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 7

Range 1: 6434 to 7153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
324.6 bits(702) 0.0 126/240(52%) 0/240(0%) Minus/Plus
Query       22  KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKR  741
                K  SE + R  +  STY++W EQD+V KC+WL+AD+P++AL+P    M FE V T T+EDA +EYLKY AIGIER Y A +    IAV  A+GVLK P Q YE LPG   YK   + ++H T+DGLR+ D+PYVF+ EKGIF KG+ +   +   +   +CD +LVFHDA+N  G LK+AR G+VG+ FKSF Y C NAPPGGGKTTM+V++F++ P +T  +TAN+GS++DIN  + K+
Subject   6434  KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPYVFLMEKGIFCKGQSLCGGMHGDETALLCDSLLVFHDALNFCGCLKIARLGLVGKEFKSFNYTCVNAPPGGGKTTMMVEKFLEQPRTTTMVTANLGSADDINKKLDKK  7153

Range 2: 5948 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.3 bits(313) 0.0 60/110(55%) 0/110(0%) Minus/Plus
Query      874  GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFRAT  1203
                GWP VL++I+    Y   FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F  +C+         VAS D F+M  GFQR + H+V S  EGRISLTFR+T
Subject   5948  GWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST  6277

Range 3: 6796 to 7137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 55/114(48%) 0/114(0%) Plus/Minus
Query       38  IFMSSELPTLAVMVAVLLGDLTNSSTSIVVLPPPGGAL*HLYSNDLNDSPTIPHRATFSAPIKLIASWKTNISSHTNRLSPKATTASTSLPLIKIPFSAMNTYGKSLTRKPSCV  379
                + MSS LP LAV + V+ G   N ST IVV PPPGGAL  +    LN  PT P  A F  P K  ASW T+  SH + +S          PL KIPFS  NTYG S + KPS V
Subject   6796  LLMSSALPKLAVTIVVVRGCSKNFSTIIVVFPPPGGALTQV*LKLLNSLPTKPSLAIFKHPQKFKASWNTSKESHNSAVSSPCMPPHNDCPLQKIPFSIKNTYGISHSLKPSSV  7137

Range 4: 6490 to 6768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 50/93(54%) 0/93(0%) Plus/Minus
Query      407  L*TWKPGSDS*T*LGTFKTPSAVVTAMFLAISNALYVLSIPIARYFKYSTTASSEVPVFTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHQ  685
                L*  KPG+ S*   G F TP A +TA+ L   NALY LSIPIA YF+YS  ASS V V T S  I    G RA  G SA + SH +T SCS Q
Subject   6490  L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCSVQ  6768

Range 5: 6001 to 6276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 46/92(50%) 0/92(0%) Plus/Minus
Query      875  VALNVKLMRPSSIELTECKCVL*KPQGMRK*SPEATFMTITLPPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQWSK  1150
                V LNVKL+ PS  E T C  +L*KP  +   S EAT         LH + K A P   TV +GLS G*H S SAWN   PP  Y  TKQWSK
Subject   6001  VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK  6276

Range 6: 6446 to 7129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 65/228(29%) 0/228(0%) Plus/Minus
Query       46  VLRTSHISRNGGRAIG*LDKFVH*HRRLTATWGSIIAFVFERLK*FTHHTTSSDFQCTHQINSIMENQYIITYEQIVAQSYYRVDIFALDKNTFLSYEYIR*VPHTQAVLC*MKNEI*A*LVNVEAR**FINLIRHFQNTFSSSDGNVPSHKQRPVCSLNTYSQILQVLHDGIFRGPGFYHFKRHWGVVGFESHHWIISPEPLTLLDVILFTPDRVRRPPLDFPTTSL  729
                V+ T+ +SR        L +  + HR  + +   I   V + L+  T+   SSDF    +I  +ME Q  I  ++ +   +         ++T L  E+IR +   QA+L  + N +   LV+ +AR   ++L R  Q+TF  S GN+    +R V  LN    +LQVL   I   P  +  K H      +S + IIS +P+ L   +L  PD +   P   P   L
Subject   6446  VVGTTQVSRYHRSRTRLLQELFNHHRSFSTSGWGIDTSVVKALEFLTNQAQSSDF*APTEIQGVMEYQQRIA*QRRLVTMHAPTQRLPFAEDTLLHQEHIRYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL  7129

Range 7: 5942 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 40/112(36%) 0/112(0%) Plus/Minus
Query      874  SRPKRQTDAPFVNRAH*MQVRPLKTARHEKIVTRSHVYDHNLTTLPTLN*EVSLPHEIDCQDGVIRWIALLIIGVEWYASTHLVLLH*AMVKDARVLNCRQDIF*DTGPPP*  1209
                SRP+ QTD+      H M V PLK   H K + RSH       T+ TL  E+ +   +     V+  +A  II VE Y +T+ +LL+ AMV+  +V     D+ *   P P*
Subject   5942  SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV*HMWPTP*  6277

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 6164 to 6613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 65/150(43%) 0/150(0%) Minus/Plus
Query        7  KVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLE  456
                K P  VYE+LPG  VY +   ++ ++ +DG  + DL YVF+   G F+ G++++AV++  D + VCDD+LVFHDA+NL G +++A+  +VGE  K+      N+PPGGGKTT LVDE+          TAN GS+ DIN A++ R+   E
Subject   6164  KFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE  6613

Range 2: 5393 to 5716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 48/108(44%) 0/108(0%) Minus/Plus
Query      880  GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFR  1203
                GW + L+++   +K    +DHCL+QKY+ G  + FHADDE+CY S   ++TVNL G+A F ++  K G+++   +  GD F+M  G QR   HSV S+DEGR+S+T R
Subject   5393  GWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR  5716

Range 3: 5900 to 6157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 20/86(23%) 0/86(0%) Minus/Plus
Query      460  REVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV  717
                R+   +ST     E   + K  W+  ++PV+ ++     +  + +KT  +E   +E++ YLA      +  L  AR++   T + V
Subject   5900  RQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV  6157

Range 4: 6247 to 6438 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 26/64(41%) 0/64(0%) Plus/Minus
Query      182  SPTIPHRATFSAPIKLIASWKTNISSHTNRLSPKATTASTSLPLIKIPFSAMNTYGKSLTRKPS  373
                SPT    A  + P K IAS  T+ SS T+  S    TAS   P  K+P     TY KS    PS
Subject   6247  SPTNALLANLTHPRKFIAS*NTSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPS  6438

Range 5: 5455 to 5649 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 25/65(38%) 0/65(0%) Plus/Minus
Query      947  PQGMRK*SPEATFMTITLPPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQ  1141
                P  + K SP     +   P       K A P + TV     D *H SSSA N    P LYFC KQ
Subject   5455  PGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  5649

Range 6: 6475 to 6513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 11/13(85%) 0/13(0%) Plus/Minus
Query      107  SSTSIVVLPPPGG  145
                SST  VVLPPPGG
Subject   6475  SSTRRVVLPPPGG  6513

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 7

Range 1: 6453 to 6887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.8 bits(301) 0.0 56/145(39%) 0/145(0%) Minus/Plus
Query       22  KVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKR  456
                K P    +S PG   +   +  ++  ++    + DL YVF   +  FI+G+D++ +    D   VCDD++ FHDA+NL   + +AR  ++G++F S + K  N+PPGGGKTT L D F+K  +     TANVGS+EDIN  + KR
Subject   6453  KFPKSYLDSTPGLREHSMLNKNLYVVSESVSTIYDLDYVFSVSRNRFIRGRDINVLCTNNDKFLVCDDLVPFHDALNLKAVISLARTSLIGKNFSSIKMKYVNSPPGGGKTTRLCDTFMKRKDGVVIATANVGSAEDINKEIAKR  6887

Range 2: 5694 to 5894 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 31/67(46%) 0/67(0%) Minus/Plus
Query     1000  WPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGG  1200
                W   L++IL   +    ++ CLVQ+Y  G  +P H+D+E CY  D+ +LTVNL GKA FS+KC  GG
Subject   5694  WFEGLDEILRKTEGDLSYNQCLVQRYPEGTMIPLHSDNEACYEPDHKVLTVNLTGKALFSVKCNVGG  5894

Range 3: 5907 to 6008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 19/34(56%) 0/34(0%) Minus/Plus
Query      880  VASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFR  981
                + + ++F+M  GFQRTH HSV S    RISLTFR
Subject   5907  LGNDEWFVMIQGFQRTHKHSVISRSPQRISLTFR  6008

Range 4: 6342 to 6428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/29(41%) 0/29(0%) Minus/Plus
Query      481  EDAVVEYLKYLAIGIERTYRALLMARNIA  567
                E A +EY+ YLA  +   YR+L  A   A
Subject   6342  EAASIEYILYLAYRVYNLYRSLSAAATYA  6428

Range 5: 5705 to 5893 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 26/63(41%) 0/63(0%) Plus/Minus
Query     1001  PPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSK  1189
                PP LH  EK AFP RLTV+   S  * +S S   G   P  Y  T+ W       + + ISSK
Subject   5705  PPTLHFTEKSAFPVRLTVKTL*SGS*QASLSLCKGIIVPSGYR*TRHWLYDRSPSVFLSISSK  5893

Range 6: 6758 to 6889 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 19/44(43%) 0/44(0%) Plus/Minus
Query       20  SLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTSIVVLPPPGGAL  151
                +LF  ++ MSS  PT AV +        N S ++VV PPPGG L
Subject   6758  ALFAISLLMSSAEPTFAVAMTTPSLRFMNVSHNLVVFPPPGGEL  6889

Range 7: 6590 to 6709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 17/40(42%) 0/40(0%) Plus/Minus
Query      200  RATFSAPIKLIASWKTNISSHTNRLSPKATTASTSLPLIK  319
                RA     ++L ASW    SSHT  LS        SLPL+K
Subject   6590  RAKLITALRLSASWNGTKSSHTKNLSLFVHRTLISLPLMK  6709

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 5

Range 1: 5203 to 5355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 31/51(61%) 0/51(0%) Minus/Plus
Query     1003  SVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKG  1155
                S+FDHCL+QKY  G G+PFH D+E  YP  NPILT++L G+  FSIKC  G
Subject   5203  SMFDHCLIQKYNRGAGIPFHKDNEPVYPIGNPILTIHLSGEGMFSIKCGTG  5355

Range 2: 5386 to 5448 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 15/21(71%) 0/21(0%) Minus/Plus
Query      904  YFLMPCGFQRTHLHSVSSIDE  966
                +FLMPCGFQ+THLHSV+   E
Subject   5386  WFLMPCGFQKTHLHSVTCSSE  5448

Range 3: 5449 to 5484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 8/12(67%) 0/12(0%) Minus/Plus
Query      865  RISLTFRATRRV  900
                R+SLTFRAT+++
Subject   5449  RVSLTFRATQQL  5484

Range 4: 5217 to 5354 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 19/46(41%) 0/46(0%) Plus/Minus
Query     1004  PFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQ  1141
                P  H IE +  P +  V++GL  G*  S S   G P P+LYF  +Q
Subject   5217  PVPHFIENIPSPLKWIVKIGLPIG*TGSLSL*KGIPAPLLYF*MRQ  5354

Range 5: 5391 to 5447 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 9/19(47%) 0/19(0%) Plus/Minus
Query      905  SSIELTECKCVL*KPQGMR  961
                S   +TE +CV  KPQG++
Subject   5391  SDEHVTE*RCVFWKPQGIK  5447

Nucleotide Sequence (627 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
63
126
189
252
315
378
441
504
567
627

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
411.3 1084.4 35% 4.031e-114 37% NC_004667
259.1 444.7 15% 2.745e-68 31% NC_022072
181.1 181.1 27% 8.017e-45 44% NC_016509
118.2 118.2 20% 6.935e-26 40% NC_010178
127.3 127.3 20% 1.249e-28 41% NC_029783

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 10

Range 1: 10977 to 11603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
411.3 bits(896) 0.0 170/209(81%) 0/209(0%) Plus/Plus
Query        1  SIECVWRWSTGLENFYPDPVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEPKEMDIAVFKLSTDGTVSVIVNGEEVVNEYLVPGTTNILESLVYRSGREEVEAKAIPEYLKT  627
                S   V  + TGL+NFYPDPV+AVMTGGSSAL KVR DVANLPQ+SKV+FDS+DFRCSVACGAKVYCD L+G+S LRLVDTLTNTLTDEV   QPVVIFPKGSPIPCSYTHRY V G +VVYGIFEGENNRAFLNEPTFRG+SKRRG+P E D+A F LSTDGTVSVIVNGEEV NEYLVPGTTN+L+SLVY+SGRE++EAKAIPEYL T
Subject  10977  SARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTT  11603

Range 2: 11357 to 11602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 63/82(77%) 0/82(0%) Minus/Minus
Query      381  VFRYSGIAFASTSSLPDL*TKDSNMLVVPGTRYSFTTSSPLTITLTVPSVDNLNTAISISFGSPLRLDIPRNVGSFRKALLF  626
                V +YSGIA AS SSLPDL*T +S+  VVPGTRYSF TSSPLTIT TVPSV+ LN A S+S GSPLR D PRNVGSFRKALLF
Subject  11357  VVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLF  11602

Range 3: 10988 to 11188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 44/67(66%) 0/67(0%) Minus/Minus
Query       12  PESMSQYTFAPQATEHRKSELSNITFDTCGKFATSSLTFDSALEPPVMTATTGSG*KFSKPVLHRQT  212
                P  +SQ T APQATEH KS LSN T D CGK ATS LT   AL+PPV+TA TGSG*K S+PVL+  T
Subject  10988  PAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTST  11188

Range 4: 11249 to 11302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 15/18(83%) 0/18(0%) Minus/Minus
Query      273  VYEHGIGLPLGKITTG*K  326
                VYE GIGLP GKITTG*+
Subject  11249  VYEQGIGLPFGKITTG*R  11302

Range 5: 11007 to 11603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 74/199(37%) 0/199(0%) Minus/Minus
Query       31  CL*VLRYCFRFYFFPTRSVD*RF*YVSRPWH*ILVHDFLSVDDHTYRPICR*LKHCDIHLLRLTSTFGHTPERRFIQKGSVVLAFKDAVDDFIPTHVVPVSVRTRYRTTFGKNHHRLKIRHFIS*SVS*CVH*AQIATTGKYVAIYLRPTGH*TPKIRTIEYNL*HLWQIRYVLSYFR*RARTPRHDGHHRIWIKIFQT  627
                C  VL YC     F  R +D    YV  P + I +  FL+++D+ +R +   +K   + L  ++ TF + PERR I K SV+L FK  V     TH V +S+ T Y TTF +N+HRLK  + + * + * VH +Q A T + +A+ L PT H T KI T+E++  +L QI ++     *    P H+G++R+W+K+ +T
Subject  11007  CGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDLN*ST*PPSHNGNNRVWVKVVKT  11603

Range 6: 11252 to 11593 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 46/114(40%) 0/114(0%) Plus/Plus
Query      276  SAGGDFSQR*SDTVFVHSQVQREWG*SRLRHL*RREQQSLSE*TDVPGYVQT*R*AEGDGYRSV*VIYRWDGKCDRQRRGSRERVSSARDD*HIRIFSLQIW*GRSRSESNTGV  617
                SAGG+F +R*S+T+F++S +   W    +R++*R E QS S+* DVPG ++T*     D   +V* ++  +G C R   GS+E +S  RD+       L IW  R R   NT V
Subject  11252  SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWERRFRG*GNTRV  11593

Range 7: 11096 to 11233 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 19/46(41%) 0/46(0%) Plus/Plus
Query      120  FATSVKGYIR*FGFSVFSGLWGEGILRHTFR**QSAPSGHTN*HSN  257
                FA  +   +R + F +F GLWG G+LR+  R**++   GH N ++N
Subject  11096  FAADI*SRVRQYRF*MFGGLWG*GLLRYFGR**RTETGGHFNEYAN  11233

Range 8: 11095 to 11277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 24/61(39%) 0/61(0%) Plus/Plus
Query      119  ICHKCQRLYSIVRIFGVQWPVGRRYIATYFPVVAICA*WTH*LTL*LMKCLIFSRW*FFPK  301
                IC +  +  S V I  V+W VG R+ A  + V+A    WT *   *  +  +FSRW*F  K
Subject  11095  ICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRK  11277

Range 9: 11338 to 11409 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/24(62%) 0/24(0%) Plus/Plus
Query      362  TASLKARTTEPF*MNRRSGVCPNV  433
                T  LK R TE F*M+RRSG   NV
Subject  11338  TVYLKGRITELF*MSRRSGAYRNV  11409

Range 10: 11134 to 11322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 26/63(41%) 0/63(0%) Minus/Minus
Query      158  HSRCTCECTNTVSDYLWEKSPPAENQTLHQLEC*LVCPLGADCYYRKVCRNIPSPHRPLNTEN  346
                H  C  E  N V DYL  K PPAE+     L   L CP  +  YY    R+ P PH+P N  N
Subject  11134  HPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*N  11322

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 4

Range 1: 11966 to 12562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.1 bits(562) 0.0 106/199(53%) 0/199(0%) Plus/Plus
Query       22  WSTGLENFYPDPVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEPKEMDIAVFKLSTDGTVSVIVNGEEVVNEYLVPGTTNILESLVYRSGREEVEAKAIPEY  618
                +S  +E F PD  VAV+TGGSSAL +VR+ +A LP V+ V++D  DFRCSVACGAKVYCD L G  +LRLVDTLTN+L+DEV +F+P ++FPKG+PIPCSYT  Y+VS   VVYG++EGE NR++LNE TFR   +     K  D   + LS DGT+SV +NG+  VNE+     +N+++S  Y +GRE+ + + + EY
Subject  11966  FSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGREDTQKEGVGEY  12562

Range 2: 11975 to 12472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 51/166(31%) 0/166(0%) Minus/Minus
Query       31  LVHDFLSVDDHTYRPICR*LKHCDIHLLRLTSTFGHTPERRFIQKGSVVLAFKDAVDDFIPTHVVPVSVRTRYRTTFGKNHHRLKIRHFIS*SVS*CVH*AQIATTGKYVAIYLRPTGH*TPKIRTIEYNL*HLWQIRYVLSYFR*RARTPRHDGHHRIWIKIFQT  528
                LV+   ++D    RPI R*+    I  L   +    TPER F++  ++ L+F  ++ D   TH V   VR RY    GKN  RL++ H ++ ++S  ++ ++   T   +A+Y   T + T K+  + +   + W+  Y+LSYF * ART   +    IW + F +
Subject  11975  LVNSKFAIDSDAQRPIER*VVLNRIRSLAARTMSIFTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASYAWKRCYLLSYFH*GARTSG*NSDGPIW*ESFHS  12472

Range 3: 11992 to 12156 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 32/55(58%) 0/55(0%) Minus/Minus
Query       48  PESMSQYTFAPQATEHRKSELSNITFDTCGKFATSSLTFDSALEPPVMTATTGSG  212
                P   SQYTFAP ATEH KS  S  T  T G  A   LT   ALEPPV TAT  SG
Subject  11992  PPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSG  12156

Range 4: 12223 to 12270 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 11/16(69%) 0/16(0%) Minus/Minus
Query      279  VYEHGIGLPLGKITTG  326
                VYE GIG PLGK + G
Subject  12223  VYEQGIGFPLGKTSEG  12270

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 10783 to 11295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.1 bits(391) 0.0 76/171(44%) 0/171(0%) Plus/Plus
Query       22  WSTGLENFYPDPVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEPKEMDIAVFKLSTDGTVSVIVNGEEVVNEYL  534
                ++ G       P+V V+TGGS AL  V++ +  LP VS+  +DS  FR SVA GAK+Y DIL+G S+LRL+DT++ TL+DE+S F  +VIFPKG PIP  Y   + +SG  + YGI EGE+NR +LNE  F+G   R    ++ D   +++S DG + + V+G ++ N  L
Subject  10783  FAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL  11295

Pineapple mealybug wilt-associated virus 1, complete genome

Sequence ID: Length: 13071 Number of Matches: 1

Range 1: 9210 to 9590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.2 bits(253) 0.0 51/127(40%) 0/127(0%) Plus/Plus
Query       64  AVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEP  444
                AV+ GG+S L  V + VA+LP ++KVIFD   +R +VA G  +Y    SGSS  RL+D+++ +L+DE  + + V IFPKG PIP +   R+ +   +    + +GE++ A +NE TF G  K    P
Subject   9210  AVLIGGTSYLPGVIDSVASLPMITKVIFDRKTYRAAVALGGALYAQTFSGSSRYRLIDSISGSLSDEFKNLKAVCIFPKGHPIPSTVESRFTMPSTDTGVVLMQGESSMANMNEMTFSGSVKTSTYP  9590

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 11231 to 11602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.3 bits(273) 0.0 51/124(41%) 0/124(0%) Plus/Plus
Query       55  PVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMS  426
                P   V+TGGS+AL  +     ++  V+ V+++   FR SVA GAK+Y D+L+  S+L L+D+L+ TL+D+++ F+  ++FPKG+ IP ++   Y V   EV YG++EGE N  +LN+ TF+G++
Subject  11231  PTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA  11602

Nucleotide Sequence (293 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
30
60
90
120
150
180
210
240
270
293

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
234.3 1164.8 33% 2.506e-61 85% NC_004667
140.8 204.7 27% 3.449e-33 50% NC_022072
95.9 95.9 33% 1.136e-19 42% NC_029783
71.6 71.6 32% 2.322e-12 39% NC_005065
69.8 177.3 25% 1.944e-17 44% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 6204 to 6494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.3 bits(505) 0.0 97/97(100%) 0/97(0%) Plus/Plus
Query        3  QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  293
                QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP
Subject   6204  QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  6494

Range 2: 6204 to 6494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 84/97(87%) 0/97(0%) Minus/Minus
Query        3  WPFGQ*SHYRLILTTNDLFRVTLFRSPYGH*GQQVANV*RTSV*FRSVYNTFLLWNKYSTIHPKHLLPVYEWYLIYVSKKEAFRRASREDA*L**AL  293
                WPFGQ S+Y  +LT NDLFRVTLFRSPYGH*GQQVAN+*RT V FRSVYN FLLWNK STIHPKHLLPVYEWYLIYVSKKEAFRRA  EDA*L**AL
Subject   6204  WPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**AL  6494

Range 3: 6202 to 6492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.7 bits(412) 0.0 82/97(85%) 0/97(0%) Minus/Minus
Query        1  AFWTVISLPAYPYH*RPFQGNTFPFPLRSLRTTSSKRLTDICMI*KCIQHFPSLEQIQHNPS*TPSPCL*MVSDLCLQKRGLQTRQSRRRLIVVSLD  291
                AFWT I L   PY *RPFQGNTFPFPLRSLRTTSSK LTD C I*KCIQ FPSLEQ QHNPS*TPSPCL*MVSDLCLQKRGL TR+ RRRL+VVSLD
Subject   6202  AFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLD  6492

Range 4: 6202 to 6492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 84/97(87%) 0/97(0%) Plus/Plus
Query        1  IKAYYN*ASSRLARLKASFLET*IRYHS*TGRRCLGWIVLYLFQRRKVLYTLLNHTDVR*TFATCCPQ*P*GERKSVTLKRSLVVRISR**DHCPKG  291
                IKAYYN*ASS+ AR KASFLET*IRYHS*TGRRCLGWIVL+LFQRRK LYTLLN T VR* FATCCPQ*P*GERKSVTLKRSL VR ++**D CPKG
Subject   6202  IKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKG  6492

Range 5: 6203 to 6442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.4 bits(394) 0.0 78/80(98%) 0/80(0%) Minus/Minus
Query        2  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTNTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPNCSKP*  241
                FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGT TAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTP+CSKP*
Subject   6203  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*  6442

Range 6: 6203 to 6493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 82/97(85%) 0/97(0%) Plus/Plus
Query        2  SRLTTIRRLRDWRV*RPLFWRHKSDTIHKQGEGV*DGLCCICSKEGKCCIHF*IIQMSXXXXXXXXXNDRKGNGKVLP*KGR*W*G*AGSEITVQKA  292
                SRLTT RRLR+ RV RPLFWRHKSDTIHKQGEGV*DGLCC CSKEGK CIHF*I+Q+SVR LLLVVLNDRKGNGKVLP*KGR* *G   S+I VQKA
Subject   6203  SRLTTTRRLRNRRVGRPLFWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKA  6493

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 7268 to 7558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.8 bits(301) 0.0 55/97(57%) 0/97(0%) Plus/Plus
Query        3  QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  293
                +GLLQ G FA+GA EG+F+GD++QIPFINREK+FR   +   P+K  + YT ++YRCPLDVC++LS++     EKCY   VVSG   PVVRS  KRP
Subject   7268  EGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRP  7558

Range 2: 7270 to 7497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 38/76(50%) 0/76(0%) Minus/Minus
Query        5  *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTNTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPNCSKP  232
                *HFS   ++  DN   TSNG  Y   VY    F G        N FS FM GI*  SP K PS AP AK PNCSKP
Subject   7270  *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKP  7497

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 7017 to 7307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 41/97(42%) 0/97(0%) Plus/Plus
Query        3  QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  293
                +G L   + A    E + +GD+NQIPF NREK+F M  +   P +  + YT+ SYRCP DVCYLLS M     + CYP  V + +D+  +RS+   P
Subject   7017  KGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIP  7307

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 4812 to 5090 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 36/93(39%) 0/93(0%) Plus/Plus
Query        6  GLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLS  284
                G L++     GA E   +GD  QIPFINR + F     V    K  V+  + SYRCP DVC +LS    +    CYP  V  G      RS+S
Subject   4812  GELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVS  5090

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 6845 to 7003 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 26/53(49%) 0/53(0%) Plus/Plus
Query      135  KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  293
                +E + YT  SYRCP DVCY+LSSMT     K YP  V    D   +RS  K P
Subject   6845  EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVP  7003

Range 2: 6713 to 6814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 20/34(59%) 0/34(0%) Plus/Plus
Query        3  QGLLQLGVFATGASEGLFFGDINQIPFINREKVF  104
                +G+ QL V A G  E + +GD NQIPFINREK F
Subject   6713  KGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF  6814

Range 3: 6715 to 6924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 31/70(44%) 0/70(0%) Minus/Minus
Query        5  LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTNTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPNCSKP  214
                ++VI+DN * TS GHLY++ VY+  S   +  +  + N FSL +NGI*F+SP    S  P+A T N + P
Subject   6715  ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIP  6924

Nucleotide Sequence (752 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
76
152
228
304
380
456
532
608
684
752

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
501.0 2671.6 26% 5.286e-141 82% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 11

Range 1: 16998 to 17747 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
501.0 bits(1087) 0.0 216/250(86%) 0/250(0%) Plus/Minus
Query        1  PRNITYSTKTKNEQKD*PNYFIFLTFLYFKFIEGFLPITGC*TFSFSTYAN*SIQIVTNKHSD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKQTISTANKHAQVSNVNCNPFKDLTTAEQHNISTALRNKASRSTS*RSHSLKYTHYH*LDNSFVVCLLPQLRSVRSELALYVCQSIDHLSIQDIFYFPSFHDTLRITPST**LPEHLLNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA  750
                PRN TYSTK K+EQKD*PNYFIFLTF+YFKFIEGFLPITGC*TFSFSTYAN*SI IVTNKH+D*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQK TISTANKHAQ+S+ NCNPF++LT AEQHNI   LRNKASR+TS*RS +L+ T+YH*LD+SFVVCLL QLR VR ELA  +C  IDHLSIQDIF FPSFHDTLRITPST** PEHL NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA
Subject  16998  PRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA  17747

Range 2: 16997 to 17497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
332.8 bits(720) 0.0 143/167(86%) 0/167(0%) Minus/Plus
Query      251  LHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKKYLGYLSDQCSGKRIMLTQTGLTAVEEADILRTNYLVSGNGYISNCGIARMLILTLCCGAL*KCCVVQPLSNL*TGYS*RYLLAHVC*RC*LSAFVEGDEALRKTHQSSGT  751
                LHRTILIDSIDSAFAYDQVGCLVGIARGLL+HSEDVLEVIKSMELFEVCRGKRGSK+YLGYLSDQC+ K +MLTQ GL AVE ADILRTN+LVSGN +  N GIARML+LTLCCGAL*KC VVQP+SN  TGY+ RYL AHVC*RC*L AFVEGDEALRKTHQSSGT
Subject  16997  LHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAHVC*RC*LLAFVEGDEALRKTHQSSGT  17497

Range 3: 17531 to 17746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 65/72(90%) 0/72(0%) Minus/Plus
Query        2  VGCIYRRNVNRYVY*LLFVCSNWHM*KKRRFNNQ*WVKILQ*I*NKEK*EK*NN*ASLFVRFSFL*NRLYFE  217
                VGCIYRRNVNRYVY*LLF+CSN HM*K+RRFNNQ*WVKILQ*I*NK+K*EK*NN*ASLFVR S L*NR YFE
Subject  17531  VGCIYRRNVNRYVY*LLFICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFE  17746

Range 4: 16998 to 17639 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
437.3 bits(948) 0.0 185/214(86%) 0/214(0%) Minus/Plus
Query      109  CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLNIQKMFWKSSSRWSYSKCVVERGEVKNILDT*VINALANV*C*LRPD*PQLRKQTYYERII*SVVMGIFQTVGSLGC*S*RFVAERCRNVVLFSRCQIFKRVTVNVTYLRMFVSGANCLLL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIAMFISYYLYALIGICRKREGLTTSNG  750
                CIEQFSLTV*TPPSLMTKWGVWWA*LEVCL+I+KMFW+SSSRWSYSKCVVERGE K+ILDT*VINAL N *C*LRPD PQL++QTYYERII*SVV+   Q  GSLGC S*RFVAE  +NV+LFS+CQIFKRVT+  TYLRMFVSGANC LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLI MFISYYLYALI ICRK EGLTTSNG
Subject  16998  CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVISSLQISGSLGCCS*RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLTTSNG  17639

Range 5: 16997 to 17650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
413.9 bits(897) 0.0 187/218(86%) 0/218(0%) Plus/Minus
Query       98  KDFYPLLVVKPSLFLHMPIRAYK**LINIAINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKSRQLAPLTNMRK*VTLTVTRLKI*QRLNNTTFLQRSATKRQDQHPSDPTV*NIPITTD*IIRS*YVCFLNCGQSGLS*HYTFARALIT*VSKIFFTSPLSTTHFE*LHRLDDFQNIF*MFKQTSSYAHQTPHLVISEGGVYTVNENCSMQ  751
                KDFYPLLVVKPS FLHM IRAYK**LINI INVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS QLAPLTNMRK*V + VTRLKI*  LNN TFL  SATKRQ+QHPSDP +    ITTD*+IRS*YVC  NCGQSGLS*H+ F  ALIT*VSKI F SPLSTTHFE*LHRLDD QNIF M KQTSSYAHQTPHLVISEGGVYTVNENCSMQ
Subject  16997  KDFYPLLVVKPSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQ  17650

Range 6: 17699 to 17746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 15/16(94%) 0/16(0%) Plus/Minus
Query        2  LEI*PILQKRKTNKKT  49
                LEI PILQKRKTNKKT
Subject  17699  LEIKPILQKRKTNKKT  17746

Range 7: 17263 to 17649 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.8 bits(541) 0.0 114/129(88%) 0/129(0%) Plus/Minus
Query       99  RIFTHYWLLNLLFFYICQLEHTNSN**T*RLTLRL*IHPTRHKRHFARRNSVPLL*WVFLSASSPSTKADN*HR*QTCASK*R*L*PV*RFDNG*TTQHFYSAPQQSVKINILAIPQFEIYPLPLTR*F  485
                RIFTHYWLLNLL FYIC LEH NSN**T RLTLRL*IHPTRHKRHFARRNSVPLL*WVFLSASSPSTKA+N*HR*QTCA+K*R*L*PV*+FD G*TT HFYSAPQQSVK NILAIP+F    LPLTR*F
Subject  17263  RIFTHYWLLNLLLFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARRNSVPLL*WVFLSASSPSTKANN*HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*F  17649

Range 8: 16996 to 17211 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 67/72(93%) 0/72(0%) Plus/Minus
Query      537  IIRLPEH*SLKYPRYFLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS  752
                I+ L  H*SLKYPRY LLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS
Subject  16996  IMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS  17211

Range 9: 17695 to 17745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 14/17(82%) 0/17(0%) Plus/Minus
Query        3  SKYNLFYKNEKRTKRLA  53
                SK NLFYK+E+RTKRLA
Subject  17695  SK*NLFYKSERRTKRLA  17745

Range 10: 16996 to 17298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 86/101(85%) 0/101(0%) Minus/Plus
Query      450  AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFRRCSGSHQVDGVIRSVSWKEGK*KISWILK*SMLWQTYNANSDRTDRS*GSRHTTNELSSQW*WVYFK  752
                AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF RCSG HQVDGVIRSVSWKEGK KISWILK*SM  Q ++ANS RT RS* SRHTTNE SSQW* V  K
Subject  16996  AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDANSGRTGRS*RSRHTTNESSSQW**VLSK  17298

Range 11: 17338 to 17661 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.4 bits(383) 0.0 97/108(90%) 0/108(0%) Minus/Plus
Query       87  RSAVEMLCCSAVVKSLNGXXXXXXXXXXXXXXLIVCFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SLCLLVTICML*LAYVEKEKV*QPVMGKNPSINL  410
                RS ++MLCCSA VK  NGLQL+LL CACLLAVLIV FCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*S+CLLVTI ML*LAYVEKEKV*QPVMGKNPSINL
Subject  17338  RSTIKMLCCSASVKFSNGLQLSLLICACLLAVLIVSFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEKEKV*QPVMGKNPSINL  17661

Nucleotide Sequence (409 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
41
82
123
164
205
246
287
328
369
409

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
295.2 1562.9 30% 1.992e-79 87% NC_004667
54.7 54.7 11% 5.186e-07 51% NC_003602
58.3 108.9 19% 6.71e-16 49% NC_022072
57.4 57.4 9% 7.713e-08 59% NC_017859
54.2 54.2 8% 7.125e-07 61% NC_001748

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 5100 to 5492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.2 bits(638) 0.0 121/131(92%) 0/131(0%) Minus/Plus
Query        1  RKGGKVMVMNVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQRAQSQGVTRSITVRSGGKALSEGSGWEVKGRSTYSIWCEQDYVKKCEWLRADNPVMAL  393
                RKGGKVMV+NVASGDYFLMPCGFQRTHLHSV+SIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQ+ QSQG TR+IT +SGGKALSEGSG EVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL
Subject   5100  RKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMAL  5492

Range 2: 5096 to 5491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.0 bits(620) 0.0 119/132(90%) 0/132(0%) Plus/Minus
Query        2  RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSQPLPSDRALPPDLTVIDLVTP*LCARWFGTPGDFSSDTPPANCNILPTPNTRRVALNVKLIRPSSIELTECKCVL*KPQGIRK*SPEATFMTMTFPPFLH  397
                RAITGLSALSHSHFLT*SCSHHIEYVDLPLTS PLPSDRALPPD  VI LV P LC  WFGTPGDFSSDTPPANCNILPTP TRRVALNVKL+RPSS+E TECKCVL*KPQGIRK*SPEATFMTMT PPFLH
Subject   5096  RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLH  5491

Range 3: 5101 to 5490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
257.2 bits(555) 0.0 116/130(89%) 0/130(0%) Minus/Plus
Query        3  GRVGRSWS*T*LRVTIFLCLAVFKGRTCIQ*ALSTKGVSV*RSGQLGACLV*AGCCS*PAACRMRNRQVFQTSVHRVKVLPDQSL*DRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WL  392
                GRV RSWS*T*LRVTIFLCLAVFKGRTCIQ*  STKG SV*RSGQLGA LV*AGCCS*PAACRMR+ QVFQTS HR KVLP+QS  +RGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WL
Subject   5101  GRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WL  5490

Range 4: 5127 to 5492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.5 bits(547) 0.0 106/122(87%) 0/122(0%) Plus/Minus
Query        1  KSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRSYSD*SGNTLTLCTLVWNTWRFLIRHAAG*LQHPAYTKHAPSCPERQTDTPFVDRAH*MQVRPLKTARHKKIVTRSYV  366
                KSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPR + D SG+TL L  LVWNTW  LIRHAAG*LQHPAYTK APSCPERQTD PFVD  +*MQVRPLKTARHKKIVTRSYV
Subject   5127  KSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGSTLALWLLVWNTW*LLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYV  5492

Range 5: 5129 to 5491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.8 bits(541) 0.0 110/121(91%) 0/121(0%) Minus/Plus
Query        2  RSFG*LFSYALRFSKDALAFSELYRRRAYQFDVQGNSARVWCRQDVAVSRRRVG*EIARCSKPACTESRCYQINHCKIGGQGSI*GKWLGSQGEVDILDMVRTRLR*EV*VAQG**SSDGS  364
                RSFG*LFSYALRFSKDALAFS+L+RRRA+QFDVQGNSAR+WCRQDVAVSRRRVG*E+ RCSKPA TE RCYQ NH KIGGQGSI*GKW GSQGEVDILDMVRTRLR*EV*VAQG**SSDGS
Subject   5129  RSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHTKIGGQGSI*GKW*GSQGEVDILDMVRTRLR*EV*VAQG**SSDGS  5491

Range 6: 5128 to 5490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.2 bits(472) 0.0 110/121(91%) 0/121(0%) Plus/Minus
Query        3  EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPNHFPQIEPCPPILQ*LIW*HLDSVHAGLEHLAISHPTRRRLTATSCLHQTRAELP*TSN*YXXXXXXXXXXXXXFENRKA*ENSHPKLR  365
                EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LP HFPQIEPCPPIL *L W*HL SV AGLEHL  SHPTRRRLTATSCLHQ RAELP*TSN* ALRR S LNASASFENRKA*ENSHPKLR
Subject   5128  EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLR  5490

Grapevine virus B, complete genome

Sequence ID: Length: 7599 Number of Matches: 1

Range 1: 2119 to 2247 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 22/43(51%) 0/43(0%) Minus/Plus
Query      262  KGGKVMVMNVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFR  390
                K G   V+ ++ GD  +MP GFQ+TH H+V+    GRISLTFR
Subject   2119  KCGSESVVPLSDGDVLIMPKGFQKTHKHAVTGTSAGRISLTFR  2247

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 6434 to 6556 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 20/41(49%) 0/41(0%) Minus/Plus
Query        1  KALSEGSGWEVKGRSTYSIWCEQDYVKKCEWLRADNPVMAL  123
                K  SE +    +  STY++W EQD+V KC+WL+AD+P++AL
Subject   6434  KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILAL  6556

Range 2: 6170 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 23/36(64%) 0/36(0%) Minus/Plus
Query      256  VASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFRAT  363
                VAS D F+M  GFQR + H+V S  EGRISLTFR+T
Subject   6170  VASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST  6277

American hop latent virus, complete genome

Sequence ID: Length: 8601 Number of Matches: 1

Range 1: 2392 to 2502 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 22/37(59%) 0/37(0%) Minus/Plus
Query      262  VMNVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFR  372
                V  +  G+ F MPCGFQ+TH H+VS   EGRIS TFR
Subject   2392  VWELNDGECFTMPCGFQQTHKHAVSGCSEGRISFTFR  2502

Papaya mosaic virus, complete genome

Sequence ID: Length: 6656 Number of Matches: 1

Range 1: 2068 to 2166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 20/33(61%) 0/33(0%) Minus/Plus
Query      256  GDYFLMPCGFQRTHLHSVSSIDEGRISLTFRAT  354
                GDY+L P GFQ +H H+VS+   GR+SLTFR T
Subject   2068  GDYYLSPVGFQESHKHAVSNTTGGRVSLTFRCT  2166

Nucleotide Sequence (1057 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
106
212
318
424
530
636
742
848
954
1057

Descriptions

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 21

Range 1: 9674 to 10366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
507.8 bits(1102) 0.0 222/231(96%) 0/231(0%) Minus/Plus
Query      247  *VYFLSLVLSYMTLRQNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*SSC*AKVVS*FYIEVGVFVYGRF*TGNTVASSRFCLCDNSVAGSYVCRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHLQYNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED  939
                *VY LSLVLSYMTLR NYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE* SC*AKVVS*FYIEVGVFVYG F*TGNTVASSRFCL DNS AGSYV RPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNH Q+NLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED
Subject   9674  *VYLLSLVLSYMTLRPNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEVGVFVYG*F*TGNTVASSRFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED  10366

Range 2: 10415 to 10612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 66/66(100%) 0/66(0%) Minus/Plus
Query        1  HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTD  198
                HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTD
Subject  10415  HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTD  10612

Range 3: 9556 to 9627 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 23/24(96%) 0/24(0%) Minus/Plus
Query      986  YYVGYFGATPKVFPLCV*PLM*VS  1057
                YYVGYFGATP+VFPLCV*PLM*VS
Subject   9556  YYVGYFGATPEVFPLCV*PLM*VS  9627

Range 4: 9774 to 10610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
603.2 bits(1310) 0.0 270/279(97%) 0/279(0%) Plus/Minus
Query        3  RFVNNTSNRYTKTF*RLNNEASFKGVIVXXXXXXXXXXXXXXIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRKNQQQNYHKDKIDY*QQYCLFKIVHKQIRLLQYKITILPSLSTKIIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV  839
                RFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDV FDVIPRHT PPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKA+C E GSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+RKNQQQNYH+DKIDY*QQYCLFKI+HKQIRLLQYKITILPSLSTK+IRVAPSPISLLRRTRSIPISRKNLFMSPLNLV
Subject   9774  RFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVAFDVIPRHTCPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV  10610

Range 5: 9556 to 9630 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 24/25(96%) 0/25(0%) Plus/Minus
Query      983  QRNLH*RLHTKRKNLWRSAKITYVI  1057
                QRNLH*RLHTKRKNLWRSAK+TYVI
Subject   9556  QRNLH*RLHTKRKNLWRSAKVTYVI  9630

Range 6: 9693 to 9734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 13/14(93%) 0/14(0%) Plus/Minus
Query      879  KIHNFDVASYTTTL  920
                KIHN DVASYTTTL
Subject   9693  KIHNLDVASYTTTL  9734

Range 7: 10001 to 10612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
401.5 bits(870) 0.0 203/204(100%) 0/204(0%) Plus/Minus
Query        1  VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVSGXXXXXXXXXXXXLSIFTVYVGFNFST*RSTLSLVTPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR  612
                VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTP HLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR
Subject  10001  VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTPAHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR  10612

Range 8: 9659 to 9949 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.0 bits(476) 0.0 95/97(98%) 0/97(0%) Plus/Minus
Query      664  ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIILT*RHIRQH*GKKINLDRRKE  954
                ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFII T*RHIRQH*GKKINL+RRKE
Subject   9659  ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIIWT*RHIRQH*GKKINLNRRKE  9949

Range 9: 9558 to 9626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/23(96%) 0/23(0%) Plus/Minus
Query      987  ETYIKGYTQRGKTFGVAPK*PT*  1055
                ETYIKGYTQRGKT GVAPK*PT*
Subject   9558  ETYIKGYTQRGKTSGVAPK*PT*  9626

Range 10: 10017 to 10610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
400.6 bits(868) 0.0 197/198(99%) 0/198(0%) Minus/Plus
Query        3  PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDXXXXXXXXXXXXGPDTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP  596
                PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRW GVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEP
Subject  10017  PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWAGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEP  10610

Range 11: 9690 to 9950 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.2 bits(435) 0.0 86/87(99%) 0/87(0%) Minus/Plus
Query      663  P*CCRI*RYVKIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA  923
                P*CCRI*RYV+IMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA
Subject   9690  P*CCRI*RYVQIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA  9950

Range 12: 9558 to 9623 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 20/22(91%) 0/22(0%) Minus/Plus
Query      990  LRRLFWRYAKGFSSLCVAFNVG  1055
                LRRL WRYA+GFSSLCVAFNVG
Subject   9558  LRRLLWRYARGFSSLCVAFNVG  9623

Range 13: 9949 to 10353 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
306.2 bits(662) 0.0 128/135(95%) 0/135(0%) Plus/Minus
Query      260  M*VLISRRNVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSKLY*RWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRQT*EPATELSQRQNRLLATVL  664
                M*VLISRR+VRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKS+L *+WFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGR+T*EPA ELS+RQNRLLATVL
Subject   9949  M*VLISRRSVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVL  10353

Range 14: 9697 to 9900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 66/68(97%) 0/68(0%) Plus/Minus
Query      713  HDTTFAQHEDHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F*RSVIYDN  916
                HDTTFAQHE HSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F RSVIYDN
Subject   9697  HDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*FGRSVIYDN  9900

Range 15: 10414 to 10488 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 25/25(100%) 0/25(0%) Plus/Minus
Query      125  TYTFRTPVSRLSRINILRQRPSIRC  199
                TYTFRTPVSRLSRINILRQRPSIRC
Subject  10414  TYTFRTPVSRLSRINILRQRPSIRC  10488

Range 16: 10537 to 10611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 25/25(100%) 0/25(0%) Plus/Minus
Query        2  SVR*QHL*PVYQDLLAPQQRSFV*R  76
                SVR*QHL*PVYQDLLAPQQRSFV*R
Subject  10537  SVR*QHL*PVYQDLLAPQQRSFV*R  10611

Range 17: 9557 to 9604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 15/16(94%) 0/16(0%) Plus/Minus
Query     1009  HKEEKPLA*RQNNLRN  1056
                HKEEKPLA*RQ+NLRN
Subject   9557  HKEEKPLA*RQSNLRN  9604

Range 18: 9709 to 10197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
353.9 bits(766) 0.0 156/163(96%) 0/163(0%) Minus/Plus
Query      416  DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMIFVLSEGSIVILY*SRRICLWTILNRQYCC**SILSL**FCCWFLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPPSVQFAFPHLGSAVVLLWPVVFTLKPKF  904
                DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRM FVLSEGSIVILY*SRRICLW ILNRQYCC**SILS **FCCWFLR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEP S Q AFPHLGSAVVLLWPVVFTLKPKF
Subject   9709  DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGSAVVLLWPVVFTLKPKF  10197

Range 19: 10240 to 10485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.3 bits(374) 0.0 80/82(98%) 0/82(0%) Minus/Plus
Query      128  RGKLIVTV*REGCMLTRKGG*V*RGITSNVTSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI  373
                RGKLIVTV*REGCMLTRKGG V*RGITSN TSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI
Subject  10240  RGKLIVTV*REGCMLTRKGGQV*RGITSNATSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI  10485

Range 20: 9557 to 9610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 17/18(94%) 0/18(0%) Minus/Plus
Query     1003  IT*VILALRQRFFLFVCS  1056
                IT*V LALRQRFFLFVCS
Subject   9557  IT*VTLALRQRFFLFVCS  9610

Range 21: 10528 to 10554 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 9/9(100%) 0/9(0%) Minus/Plus
Query       59  TITPLNEAS  85
                TITPLNEAS
Subject  10528  TITPLNEAS  10554

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 11048 to 11335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 61/96(64%) 0/96(0%) Minus/Plus
Query      246  LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  533
                + M+VGIDFGTTFST+C+S SG  GCT VAGS++VETQ+F+PE  + Y IGK AGK YRDGV GRLY+NPKRWVGV   N   +++KLKP Y+V++
Subject  11048  IPMDVGIDFGTTFSTLCYSASGAGGCTRVAGSIFVETQVFVPEEGTRYYIGKVAGKLYRDGVVGRLYLNPKRWVGVNAINFSSFMKKLKPAYSVEL  11335

Range 2: 11381 to 11578 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 45/66(68%) 0/66(0%) Minus/Plus
Query        3  DTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP  200
                D  L V D+ICLFLR LI E E  T  TVT+AVVTVPADYNSFKR F+V AL+GLGIPV+ ++NEP
Subject  11381  DIKLSVTDIICLFLRGLIKEAESETGKTVTSAVVTVPADYNSFKRGFIVTALRGLGIPVKAIINEP  11578

Range 3: 11053 to 11274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 45/74(61%) 0/74(0%) Plus/Minus
Query      307  TPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSI  528
                TPTH  G  YNLP+TPSR  FPA LPI  ++  SG    VST  LPAT VQP  PD E   VL VVPKS+PTSI
Subject  11053  TPTHRLGFRYNLPTTPSRYNFPATLPI*YLVPSSGTNTCVSTKMLPATLVQPPAPDAE*HRVLNVVPKSMPTSI  11274

Range 4: 11380 to 11580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 39/67(58%) 0/67(0%) Plus/Minus
Query        1  VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVS  201
                VGS    LTGIPRP  A T K  L EL*SAGTVTTA VTV  V LS S I   +N+HI S T + +S
Subject  11380  VGSFMMALTGIPRPRRAVTMKPLLNEL*SAGTVTTAEVTVFPVSLSASLINPRRNRHIISVTDSLIS  11580

Range 5: 11054 to 11332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 36/93(39%) 0/93(0%) Plus/Minus
Query      249  LHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFH  527
                LH VC F     T  V   +  PPFR+ +Q    ++ I FP +FT  VS+A FR K L F  + T H  TT+  R   A  T+ GS++Y + H
Subject  11054  LHAVCWFQLFHETAKVYRVYADPPFRI*VQSPYDSIPIQFPGNFTYIVSSAFFRDKYLRFYKDATCHPGTTSCTRRRIA*STKCGSEVYAHVH  11332

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 10198 to 10389 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 34/64(53%) 0/64(0%) Minus/Plus
Query        3  LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP  194
                L+RVVD++ LF++ ++LE E      V+  V TVPA+YNSFKRSF+  AL+GLG P+R ++NEP
Subject  10198  LVRVVDLVFLFVKGILLETEEAVGKAVSGVVCTVPAEYNSFKRSFLGVALEGLGKPLRALINEP  10389

Range 2: 10000 to 10149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 24/50(48%) 0/50(0%) Minus/Plus
Query      246  TYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  395
                TY IG  A   +  G  G LY+NPKRWVGV   N +    KL P Y VK+
Subject  10000  TYSIGHRAYSDFVAGKPGGLYINPKRWVGVDGYNFQAVKRKLNPEYEVKL  10149

Range 3: 9865 to 9915 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 15/17(88%) 0/17(0%) Minus/Plus
Query      477  MEVGIDFGTTFSTICFS  527
                MEVG+DFGTTFST CFS
Subject   9865  MEVGLDFGTTFSTACFS  9915

Range 4: 9934 to 9987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 9/18(50%) 0/18(0%) Minus/Plus
Query      411  SGCTPVAGSVYVETQIFI  464
                SGC  +  S +V TQ+FI
Subject   9934  SGCVTLVNSPFVPTQVFI  9987

Range 5: 10203 to 10391 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 28/63(44%) 0/63(0%) Plus/Minus
Query        1  VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTL  189
                VGS    L G+P P  A+  KLRL EL SAGTV T   T +    S SS      +   STTL
Subject  10203  VGSFMRALNGLPNPSRATPKKLRLNELYSAGTVQTTPDTALPTASSVSSNIPFTKRKTKSTTL  10391

Range 6: 9864 to 9914 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 15/17(88%) 0/17(0%) Plus/Minus
Query      478  EKQIVLKVVPKSIPTSI  528
                EKQ VLKVVPKS PTSI
Subject   9864  EKQAVLKVVPKSSPTSI  9914

Plum bark necrosis and stem pitting-associated virus, complete genome

Sequence ID: Length: 14214 Number of Matches: 5

Range 1: 9379 to 9570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 32/64(50%) 0/64(0%) Minus/Plus
Query        3  LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP  194
                ++ VVD+I L+++ L+      T+  V +A  +VPADYNSFKRSFV  A   LGI VR V+NEP
Subject   9379  VMPVVDLIYLYIKGLVQLTISQTNLQVGSASCSVPADYNSFKRSFVYTACSALGIGVRAVINEP  9570

Range 2: 9061 to 9126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 16/22(73%) 0/22(0%) Minus/Plus
Query      462  MEVGIDFGTTFSTICFSPSGVS  527
                ME+GIDFGTTFS++CFSP+  S
Subject   9061  MELGIDFGTTFSSVCFSPANKS  9126

Range 3: 9238 to 9333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 14/32(44%) 0/32(0%) Minus/Plus
Query      243  LYVNPKRWVGVTRDNVERYVEKLKPTYTVKID  338
                +Y + KRWVG    N   +  KLKP Y V +D
Subject   9238  VYRDIKRWVGCNHINESEFRRKLKPEYIVVVD  9333

Range 4: 9387 to 9572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 32/62(52%) 0/62(0%) Plus/Minus
Query        1  VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTT  186
                VGSL T  T +PR   A  TKLRL EL*SAGT+  A  T   V+   S  K L  K+I STT
Subject   9387  VGSLMTARTPMPRALQAV*TKLRLNEL*SAGTLQEALPTCRFVWEIVSCTKPLIYKYIKSTT  9572

Range 5: 9060 to 9113 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/18(78%) 0/18(0%) Plus/Minus
Query      475  GEKQIVLKVVPKSIPTSI  528
                GEK  +LKVVPKSIP SI
Subject   9060  GEKHTLLKVVPKSIPNSI  9113

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 8

Range 1: 10625 to 10807 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 34/61(56%) 0/61(0%) Minus/Plus
Query        3  VVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP  185
                + D+I LFL+ LI E E  T   V     +VPA YNSFKRSF++ ALKGLG P+R +VNEP
Subject  10625  ITDLIALFLKGLITEAETQTGVAVVGVTCSVPAKYNSFKRSFLMTALKGLGKPLRALVNEP  10807

Range 2: 10463 to 10564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 17/34(50%) 0/34(0%) Minus/Plus
Query      246  EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  347
                EG LYVNPKRW+G+   N   +++KLKP + V +
Subject  10463  EGLLYVNPKRWIGMNSRNKHIFMDKLKPQHEVLV  10564

Range 3: 10283 to 10333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 14/17(82%) 0/17(0%) Minus/Plus
Query      477  MEVGIDFGTTFSTICFS  527
                MEVGIDFGTTFST+C++
Subject  10283  MEVGIDFGTTFSTLCYN  10333

Range 4: 10358 to 10405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/16(50%) 0/16(0%) Minus/Plus
Query      411  CTPVAGSVYVETQIFI  458
                C  +AGS+YV T+I +
Subject  10358  CVRIAGSIYVPTEILV  10405

Range 5: 10630 to 10809 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 27/60(45%) 0/60(0%) Plus/Minus
Query        1  VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITS  180
                VGSLT+   G P+PF A   KL L EL  AGT      T   V +S S IK L+ + I S
Subject  10630  VGSLTSARNGFPKPFKAVIRKLLLNELYFAGTEQVTPTTATPV*VSASVIKPLRKRAIRS  10809

Range 6: 10279 to 10320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 12/14(86%) 0/14(0%) Plus/Minus
Query      490  VLKVVPKSIPTSIS  531
                VL VVPKSIPTSI+
Subject  10279  VLNVVPKSIPTSIT  10320

Range 7: 10462 to 10500 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 10/13(77%) 0/13(0%) Plus/Minus
Query      310  PTHLFGLTYNLPS  348
                P HLFGLTY+ PS
Subject  10462  PIHLFGLTYSKPS  10500

Range 8: 8384 to 8455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 10/24(42%) 0/24(0%) Plus/Minus
Query      757  LPRFLF*GELVLSQSRAKTYLCRH  828
                +PR L    L+LS+ R   Y C+H
Subject   8384  VPRPLMQNSLLLSRRRTVLYPCKH  8455

Nucleotide Sequence (429 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
429

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
323.6 1762.6 38% 6.033e-88 95% NC_004667
205.4 349.1 52% 2.307e-52 32% NC_022072
142.7 189.5 43% 1.82e-33 44% NC_016509
125.7 125.7 31% 2.31e-28 40% NC_029783
85.4 85.4 30% 3.176e-16 32% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 2079 to 2483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
323.6 bits(700) 0.0 133/135(99%) 0/135(0%) Plus/Plus
Query        2  KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ  406
                KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAV+ Q
Subject   2079  KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVRSQ  2483

Range 2: 2078 to 2482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
304.4 bits(658) 0.0 134/135(99%) 0/135(0%) Minus/Minus
Query        1  CGLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF  405
                C LTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF
Subject   2078  CDLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF  2482

Range 3: 2080 to 2484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
301.2 bits(651) 0.0 131/135(97%) 0/135(0%) Plus/Plus
Query        3  RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVELRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRSIL*EHSRIERLSMPLGRSNRK  407
                RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCV LRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRS L* HSRIERLSMPLGRS RK
Subject   2080  RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRSTL*GHSRIERLSMPLGRSGRK  2484

Range 4: 2079 to 2483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
290.7 bits(628) 0.0 131/135(97%) 0/135(0%) Minus/Minus
Query        2  LRFDRPNGILKRSILECSYSIERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNXXXXXXXXSTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL  406
                LR DRPNGILKRSILEC YS+ERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLS THSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL
Subject   2079  LRPDRPNGILKRSILECPYSVERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL  2483

Range 5: 2078 to 2278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 66/67(99%) 0/67(0%) Plus/Plus
Query        1  EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*SSEVTWN  201
                EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV* SEVTWN
Subject   2078  EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN  2278

Range 6: 2318 to 2485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 53/56(95%) 0/56(0%) Plus/Plus
Query      241  QIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQYYRNIRE*NV*VCRWGGQTAK  408
                QIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQ+YR+IRE*NV*VCRWGGQ AK
Subject   2318  QIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQHYRDIRE*NV*VCRWGGQVAK  2485

Range 7: 2176 to 2484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.2 bits(411) 0.0 99/103(96%) 0/103(0%) Minus/Minus
Query       99  FAV*PPQRHTQTFYSRMFL*Y*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICXXXXXXXXXXXPQFQVTSELYT**DDGNHNGIPHTLA*TRSRTKCVH  407
                FA *PPQRHTQTFYSRM L* *ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSE YT**DDGNHNGIPHTLA*TRSRTKCVH
Subject   2176  FAT*PPQRHTQTFYSRMSL*C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*TRSRTKCVH  2484

Range 8: 2080 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 20/20(100%) 0/20(0%) Minus/Minus
Query        3  NVHTSHHTDQHCRPGNHLPS  62
                NVHTSHHTDQHCRPGNHLPS
Subject   2080  NVHTSHHTDQHCRPGNHLPS  2139

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 2798 to 3202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 83/135(61%) 0/135(0%) Plus/Plus
Query        2  KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ  406
                +R GD L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK    EVT R +V SF  K++V IPV+ G+ +SFK++VLD+DFVDR+YSYALNT+  FE RTFEYAVGAV+ Q
Subject   2798  RRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYAVGAVRSQ  3202

Range 2: 2827 to 3201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 58/125(46%) 0/125(0%) Minus/Minus
Query       31  CGLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PT  405
                C LTAPTAYSNV  S +  V  A E   STKS S T  LKD   P+ TG+ T     ND T    VTS+   F*    V+ W*P   PSYS+L T PD V     V+   T E  C Y SP  PT
Subject   2827  CDLTAPTAYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPT  3201

Range 3: 2930 to 3202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 29/91(32%) 0/91(0%) Minus/Minus
Query      134  LRFDRPNGILKRSILECSYSIERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNXXXXXXXXSTHSEMMVTTTVSLIL  406
                LR   P+GILKR  L+  + ++ + I  + +V ++   LK H R+  +RY    F  +R +  P  NL     L+S +  ++V   V+LIL
Subject   2930  LRSHGPDGILKRPHLKVRHRVQGIRIHAIHEVSVKH*RLKRHVRSLQHRYHDNCFCGKR*NHHPPGNLLGSDFLTSRNR*VVVAYPVTLIL  3202

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 2660 to 3061 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 59/134(44%) 0/134(0%) Plus/Plus
Query        5  REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ  406
                R+GD + Y VG  G+ Y HS   +  FF  + V+  SG+ F +EY GYR GYH  ++C    +  +    R +  +F G SLV IP +A   +SF+ + LDSDFVDR+YSY LNT   F +RTFEYAV   + Q
Subject   2660  RKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQ  3061

Range 2: 2887 to 3042 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 25/52(48%) 0/52(0%) Minus/Minus
Query      232  TAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTN  387
                TAYSNVL +N  +VLS  E   STKSES+ I L +    A +G+ T   P N
Subject   2887  TAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLN  3042

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 3198 to 3599 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 53/134(40%) 0/134(0%) Plus/Plus
Query        5  REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ  406
                R+GD L Y+VG  G+ Y+HSF  V    T   V  S    +  EY GYRCGYHH+ M             R +  +  GK++V  P      + FK I +D++FV R+Y+YALN   TF  RTFEYA+ + + Q
Subject   3198  RKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYAMSSFRSQ  3599

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 1308 to 1694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 41/129(32%) 0/129(0%) Plus/Plus
Query       20  LAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ  406
                + Y +G  G+ Y H    +  + T + V ++ G  + + YEG R GY +  + R+  S  T  T R    S  G     +PV        K + LD DFV+R+ SY LN       RTFEY V  ++ Q
Subject   1308  VTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSYLLNVAAGVNERTFEYTVTNIRSQ  1694

Nucleotide Sequence (566 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
566

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
434.5 2449.6 21% 3.678e-121 42% NC_004667
215.5 345.0 12% 3.15e-55 38% NC_022072
78.0 202.5 25% 7.563e-14 28% NC_016509
61.6 115.8 23% 6.987e-09 25% NC_005065
84.0 130.4 12% 1.218e-15 35% NC_029783

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 15032 to 15595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
434.5 bits(942) 0.0 183/188(97%) 0/188(0%) Plus/Minus
Query        2  ISVIQ*CEVEAVRSEPLRDAVLS*GSIRWLNFLLYK*SNGGVSKIPHEGSHSVGWRRIVFPS*YSFPYFRIT*VDFLLT*FGLHPIPVFDAYILYGRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYT  565
                ISVIQ*CEVEAVRSEPLRDAVLS*GS RWLNFLLYK*SN GVSKIPHEGSHSVGWRR VFPS*YSFPYFRIT*VD LLT*FGLHPIPVFDAYILY RVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYT
Subject  15032  ISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYT  15595

Range 2: 15031 to 15594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
430.9 bits(934) 0.0 185/188(98%) 0/188(0%) Minus/Plus
Query        3  RCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYRKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFYSHHHYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI  566
                RCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLY KEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVF SHH+YSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI
Subject  15031  RCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI  15594

Range 3: 15032 to 15595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
430.9 bits(934) 0.0 184/188(98%) 0/188(0%) Minus/Plus
Query        2  GVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  565
                GVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPYCFDFALLDNRY
Subject  15032  GVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRY  15595

Range 4: 15031 to 15594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
409.8 bits(888) 0.0 183/188(97%) 0/188(0%) Plus/Minus
Query        3  YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTP  566
                YLLSSSAKSKQYGVNLFGTPCLARAV+AG*IFFSISRV+VV* KYLMKDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTP
Subject  15031  YLLSSSAKSKQYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTP  15594

Range 5: 15033 to 15596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
391.9 bits(849) 0.0 183/188(97%) 0/188(0%) Minus/Plus
Query        1  V*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLP*RI*ASKTGIGWRPN*VKRKST*VIRK*GKLY*EGNTMRLQPTLCDPS*GIXXXXXXXXX*RRKFSQRILP*LSTASRRGSLRTASTSHYWITDI  564
                V*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTL *RI*ASKTGIGWRPN*VKR+ST*VIRK*GKLY*EGNT+RLQPTLCDPS*GILLTP LLYL*RRKFSQR+LP*LSTASRRGSLRTASTSHYWITDI
Subject  15033  V*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDI  15596

Range 6: 15033 to 15281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.4 bits(418) 0.0 83/83(100%) 0/83(0%) Plus/Minus
Query      316  WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLH  564
                WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLH
Subject  15033  WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLH  15281

Range 7: 15423 to 15533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 35/37(95%) 0/37(0%) Plus/Minus
Query       64  A*LGQYTLAEFSSL*VE*WWCE*NTS*RIAQCWLETH  174
                A*LGQYTLAEFSSL*VE* WCE NTS*RIAQCWLETH
Subject  15423  A*LGQYTLAEFSSL*VE**WCEQNTS*RIAQCWLETH  15533

Range 8: 15336 to 15368 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 11/11(100%) 0/11(0%) Plus/Minus
Query      229  SFDLIRSPPYT  261
                SFDLIRSPPYT
Subject  15336  SFDLIRSPPYT  15368

Range 9: 13935 to 14069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/45(42%) 0/45(0%) Minus/Plus
Query       26  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  160
                N VR ++ YFT T IT  +  K+      +A+HGVP +F PY  D
Subject  13935  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  14069

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 15940 to 16494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 88/185(48%) 0/185(0%) Minus/Plus
Query        2  PSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  556
                P+ +L+ + +   + +L+  RG+     P+ V +I E+DIYDER++   EAL++N+RL  L+ S G   +  D GN +V +IQLF+LYSTVK+ ++   Y++   L  K+V LS+  VR AIL G  D S TN VR++MRY+ +T ++LL+  K+QPAYTA AKHGVPKRF P+CFDFA+LD+RY
Subject  15940  PTSELEKLQMVGTLDKLVVERGKAIYDTPEKVFNIRESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRY  16494

Range 2: 16155 to 16493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 54/113(48%) 0/113(0%) Plus/Minus
Query        3  YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPIS  341
                YLLS  AKSKQ G NLFGTPCLA AV AG       R+  V   YL+  RT+LV + S  P +IA LT+  LK T F  + +  LY  L++   TV  S KS I  T  FP+S
Subject  16155  YLLSRIAKSKQNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFPLS  16493

Range 3: 14853 to 14987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 17/45(38%) 0/45(0%) Minus/Plus
Query       26  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  160
                N VR ++ +FT T +T ++  K+ P    +A+HGVP +F  Y  D
Subject  14853  NPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLD  14987

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 15096 to 15410 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 34/105(32%) 0/105(0%) Minus/Plus
Query       14  MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALL  328
                + + MIQ  + +ST  N+   +  +V+  L  +K  + ++E+R  I      +   N VR +MR+F+ TTI+L+    + P Y  +A+HGV  +F PY FD+ +L
Subject  15096  LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCIL  15410

Range 2: 13685 to 13882 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 25/66(38%) 0/66(0%) Minus/Plus
Query       23  LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDF  220
                L+Y +V+ A++ G   ++  N +R + R F+ T + L++  K++P      +HGVPKRF PY FDF
Subject  13685  LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDF  13882

Range 3: 16398 to 16829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 41/144(28%) 0/144(0%) Minus/Plus
Query        2  DERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  433
                +  YL    A +I   L RL L+        D   ++V +IQ  V Y T  +   K    V      K V L +  VR  I+        TN +R +MR+++  TI L+    ++P     AK G+        FD+ LLD R+
Subject  16398  ESTYLSKDVAKRITLALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF  16829

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 8772 to 8978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 25/69(36%) 0/69(0%) Minus/Plus
Query       11  SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD  217
                +Y+EV   I     +    N VR+F+R+ +   I L+I   I+P    +AK+G+P++F PYCFDF++++
Subject   8772  NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVN  8978

Range 2: 13578 to 13967 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 33/130(25%) 0/130(0%) Minus/Plus
Query       11  QINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD  400
                Q++  + +L     GS   + +   +V + Q+ V+  T  N    D       +  K+   +Y  VRE+I          N +R FMR  + + +  L    I+P    ++K GVP  F PY  D  + D
Subject  13578  QLSPSITKLCNEVWGSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPD  13967

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 15317 to 15640 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 38/108(35%) 0/108(0%) Minus/Plus
Query        2  IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  325
                ++A+IQ  V YSTV++  + D   V  +   +     Y++  + I   +     +N +R +MR+++ TTI+L+    I+P Y   A HGV K + PYCFDF  LD+RY
Subject  15317  LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRY  15640

Range 2: 14031 to 14165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query       26  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  160
                N VR + R F+ + I+     KI+P    LA+HGV KRF  YC D
Subject  14031  NPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLD  14165

Nucleotide Sequence (1792 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
180
360
540
720
900
1080
1260
1440
1620
1792

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
164.6 1511.6 16% 2.052e-68 36% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 33

Range 1: 177 to 560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 67/128(52%) 0/128(0%) Minus/Plus
Query      700  LRQFSFPHVNSTLEFYRFNKGNSDVNKFIVNLKPAGGAKVVDFSPKCAAYVYIGKLTQGVKRVFAPSPVNGYTRQFALVSGNGVAVRADGEKVKLVARSNSSDVSDSTNQAVTFEAVSHSPGCLSYYK  1083
                LR FSFPHVN+TLE+ R+NK N DV  F+  +K  G  K+ DF+P+CAA +YIGKLT+GVKR F P PV G+ RQ+A+VSG+  A+R DG+KV + AR+++S  SD ++  V FEAVS++   + Y++
Subject    177  LRVFSFPHVNNTLEYVRYNKANGDVGAFLTTMKFIGNVKLSDFTPRCAAMIYIGKLTKGVKRTFVPPPVKGFARQYAVVSGSVSALRGDGKKVLMEARTSTSATSDVSDFDVVFEAVSNALLVVHYHR  560

Range 2: 8740 to 8922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 32/61(52%) 0/61(0%) Minus/Plus
Query      243  GYPSYFRRCIDGEKFSPISLGRLALL**HTMCCDFSRSVRVG*GPTGGQQPALLERWKCWV  425
                GYPSY  R I     +P+S G+     *   C DF   V VG*GPTG QQPAL  RWKCW+
Subject   8740  GYPSYSCRSIHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWI  8922

Range 3: 8897 to 9043 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 29/49(59%) 0/49(0%) Minus/Plus
Query      112  LEVLGSVRVHVSWPNICLGRVQQ*SLASLWGMTEVFRFSTVATM*VAHA  258
                L   GSV   +S PNI LG VQ+ SL  LWGMT   RF TVA M*V HA
Subject   8897  LRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHA  9043

Range 4: 9067 to 9153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 19/29(66%) 0/29(0%) Minus/Plus
Query       12  HLGVCPRVASVRCPAASSKGR*KCWALQV  98
                HLG CPR ASVR  AA S  R*KC  L+V
Subject   9067  HLGECPRAASVR*LAAGSTER*KC*VLKV  9153

Range 5: 8578 to 8625 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 13/16(81%) 0/16(0%) Minus/Plus
Query      630  LLGEPSVRLIPVAILL  677
                LLG PSV+LIPVA+LL
Subject   8578  LLGVPSVKLIPVALLL  8625

Range 6: 179 to 529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 56/117(48%) 0/117(0%) Plus/Minus
Query      731  ETASNVTA*FVLSETSDEFDLATNLTFSPSALTATPLPLTKANCLV*PLTGDGANTRFTPWVSLPI*T*AAHFGEKSTTLAPPAGLRLTMNLLTSLFPLLNR*NSKVELT*GKEN*R  1081
                ETASN T+    SE ++   LA+  TF PS L+A   PLT A C   PLTG G N RFTP VS P+*  AAH G KS     P    +     TS   LL    SKV LT*GKE  R
Subject    179  ETASNTTSKSDTSEVAEVEVLASIKTFLPSPLSALTEPLTTAYCRANPLTGGGTNVRFTPLVSFPM*IIAAHLGVKSDNFTFPMNFMVVRKAPTSPLALLYLTYSKVLLT*GKEKTR  529

Range 7: 8715 to 8927 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 31/71(44%) 0/71(0%) Plus/Minus
Query      238  NRTQHFQRSKRAGCWPPVGP*PTLTLREKSQHMVCYHNSANRPKDIGENFSPSMHRRK*EGYPKRKNSLLY  450
                ++ QHFQR+  AGCW PVGP PT T   KS+H+  Y    + P D G      M R++*EG P+     LY
Subject   8715  DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCMLRQE*EG*PET*RKTLY  8927

Range 8: 8908 to 9045 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 25/46(54%) 0/46(0%) Plus/Minus
Query      110  SACATYMVATVLNLNTSVIPQRLARLYCCTRPKQMFGQLTCTRTEP  247
                +AC TY+ ATVLNL   VIPQR  +L  CT PK++FG L    T P
Subject   8908  AACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLP  9045

Range 9: 9050 to 9160 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 25/37(68%) 0/37(0%) Plus/Minus
Query        5  PTIPAEPSTFSALLSWLLDT*PRLP*GKRPNALTQSA  115
                PT+P+ PSTFSA  S LL T*P LP*G RPNA T  A
Subject   9050  PTVPSGPSTFSAP*SRLLVT*PTLP*GTRPNACTSYA  9160

Range 10: 8577 to 8624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 12/16(75%) 0/16(0%) Plus/Minus
Query      631  RRIATGINLTDGSPRR  678
                RR ATGIN TDG+P+R
Subject   8577  RRSATGINFTDGTPKR  8624

Range 11: 8667 to 8726 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 13/20(65%) 0/20(0%) Plus/Minus
Query      434  KTLYCTSQAGINLTD*TKRK  493
                KTLYCT   G+ LT *TK+K
Subject   8667  KTLYCTCSTGLVLTV*TKQK  8726

Range 12: 8821 to 8925 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 22/35(63%) 0/35(0%) Plus/Minus
Query      240  PNPTLPAL*KSRLLATCWTLTYPDATRKVTTHGVL  344
                PNPTLPA  K RLL TCW L+Y D   KV T G L
Subject   8821  PNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL  8925

Range 13: 9054 to 9161 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 20/36(56%) 0/36(0%) Plus/Minus
Query        4  PHYTCRAQHFQRPFELAAGHLTEATLGQTPKCAHAI  111
                P+ T R  HFQR  E AA HLT+A LG +PKC H +
Subject   9054  PNCTFRT*HFQRSVEPAASHLTDAALGHSPKCMHVL  9161

Range 14: 8949 to 9041 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 20/31(65%) 0/31(0%) Plus/Minus
Query      114  HVRLTW*LRC*T*TLPSSPKDSLDSTAVHDL  206
                H RLT  L+ *T*+LPSSPKD+L+ T VH L
Subject   8949  HARLT*QLQS*T*SLPSSPKDTLN*TPVHRL  9041

Range 15: 8729 to 8776 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 10/16(62%) 0/16(0%) Plus/Minus
Query      389  PHLCTDESRKGTPKEK  436
                PH+C+D+SRKG P+ K
Subject   8729  PHVCSDKSRKGNPRLK  8776

Range 16: 8565 to 8630 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 13/22(59%) 0/22(0%) Plus/Minus
Query      555  TRIRSATGIALTDGTRRREN*N  620
                T  RSATGI  TDGT +R   N
Subject   8565  TSRRSATGINFTDGTPKRRRKN  8630

Range 17: 8668 to 8730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 10/21(48%) 0/21(0%) Plus/Minus
Query      430  RKNSLLYKSSRY*PHGLD*TK  492
                +K+ LLY   R  PHG++ TK
Subject   8668  KKDPLLYMFHRSCPHGVNKTK  8730

Range 18: 8828 to 8932 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 21/35(60%) 0/35(0%) Plus/Minus
Query      233  TRTEPNTSSALKEQAVGHLLDPNLP*RYEKSHNTW  337
                T T+ NTSSA   QAVGHLL P LP    KS +TW
Subject   8828  TETKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTW  8932

Range 19: 9049 to 9156 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 21/36(58%) 0/36(0%) Plus/Minus
Query        9  LYLQSPALSAPF*AGCWTPNRGYPRANAQMRSRNQH  116
                LYLQ  ALSA   AGC +P+R  PRA AQM +R  H
Subject   9049  LYLQDLALSALRRAGC*SPDRRCPRALAQMHARLTH  9156

Range 20: 315 to 533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 26/73(36%) 0/73(0%) Plus/Minus
Query      727  MRDRFKRNGLIRTIGNVRRV*PSH*LDFLAVRPNRHTIAAN*GELPSIAVNG*WGKYTLHPLGELTNINVSGA  945
                +R+ F+ +  IR +G+     P    D L +   R   AA+   LP    N    K TLHP GEL+N+N S A
Subject    315  IRNSFEYDVEIRHVGSCGS*GPCLHQDLLTIPSQRAD*AADNSVLPCKPFNWWGDKRTLHPFGELSNVNHSCA  533

Range 21: 8981 to 9040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 13/20(65%) 0/20(0%) Plus/Minus
Query      115  MCDLHGSYGAKPKHFRHPPK  174
                M DLH SY  KP   RHPPK
Subject   8981  MHDLHSSYSPKPSRSRHPPK  9040

Range 22: 102 to 248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 18/49(37%) 0/49(0%) Plus/Minus
Query     1012  VTISLIKPVKLQSGVNVRKGELTQNTKTKTKER*ANRTTLNKNRRERNS  1158
                +TI L+ P  LQ  +NVRKGE  Q       E *  +   N+N   R +
Subject    102  ITIGLVVPNVLQGVINVRKGENAQWANVVHSET*KLKRRGNRNNGLRRT  248

Range 23: 8666 to 8755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 13/30(43%) 0/30(0%) Plus/Minus
Query      405  TKVGRVPQKKKLSTVQVKPVLTSRTRLNEK  494
                ++ G    K++ STV V PVL+SR   N+K
Subject   8666  SRKGNPRLKERPSTVHVPPVLSSRCEQNKK  8755

Range 24: 8567 to 8626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 12/20(60%) 0/20(0%) Plus/Minus
Query      629  KEGSPLVLTSQMARLEDRNK  688
                +EG P VLTS+MARL +  K
Subject   8567  REGVPPVLTSRMARLREDEK  8626

Range 25: 8733 to 8933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 32/67(48%) 0/67(0%) Minus/Plus
Query      232  SFGVPFLLSSVHRWGEIFSYIFGTIGAIMIAHHVL*LFS*RQGRLGSNRWPTACSFRALEVLGSVRV  432
                S G+PFLL S H  G + S I  T     IA  V  L +  +GR+G+NR PTAC+  ALEVL  V V
Subject   8733  SLGLPFLLLSEHTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLVSV  8933

Range 26: 9050 to 9157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 20/36(56%) 0/36(0%) Minus/Plus
Query        8  C*LRERIWAFALG*PRLGVQQPAQKGAESAGLCRYS  115
                C  R  IWA ALG  R G  QPA + AESA   RYS
Subject   9050  CVRRACIWASALGQRRSGD*QPALRSAESARS*RYS  9157

Range 27: 332 to 406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 14/25(56%) 0/25(0%) Minus/Plus
Query      854  YW*AHPRGEACICPITR*RLY*AIR  928
                +W AH RGEA +CP T *R+  A+R
Subject    332  HWKAHQRGEAYVCPPTS*RVCTAVR  406

Range 28: 8935 to 8997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 13/21(62%) 0/21(0%) Minus/Plus
Query      158  AEHLFRSCTAVESSESLGDDG  220
                A++ FR CT V  S SLGDDG
Subject   8935  AKYPFRRCTGV*FSVSLGDDG  8997

Range 29: 4074 to 4157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 13/28(46%) 0/28(0%) Minus/Plus
Query      706  SNSSDVSDSTNQAVTFEAVSHSPGCLSY  789
                +N  DV  STN  VT E  +HSP  + Y
Subject   4074  TNVRDVGISTNGEVTGEEETHSPRSVQY  4157

Range 30: 8982 to 9041 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 14/20(70%) 0/20(0%) Minus/Plus
Query      114  FGG*RKCLGLAP*LPCKSHM  173
                FGG*R+ LGL  *L CKS M
Subject   8982  FGG*RERLGLGL*LLCKSCM  9041

Range 31: 8577 to 8624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/16(75%) 0/16(0%) Minus/Plus
Query      631  SSRRAICEVNTSGDPS  678
                S RRAI EVNT G PS
Subject   8577  SLRRAIREVNTGGTPS  8624

Range 32: 8744 to 8926 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 33/61(54%) 0/61(0%) Minus/Plus
Query      239  TLPTFVGA*MGRNFLLYLWDDWRYYDSTPCVVTFLVASG*VRVQQVANSLLF*SAGSVGFG  421
                TLPT VGA M    L YL D      S P V TF + S * R QQV NSL    AGSVGFG
Subject   8744  TLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFG  8926

Range 33: 316 to 456 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 21/47(45%) 0/47(0%) Minus/Plus
Query      804  APLTFILVSSPKG*SVYLPHHPLTAILGNSP*LAAMVWRLGRTARKS  944
                A L F L SSPKG*SV L  H L  + G++   AA   R     R+S
Subject    316  AQL*FTLESSPKG*SVRLSPHQLKGLHGSTLLSAAQSAR*EGMVRRS  456

Nucleotide Sequence (305 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
31
62
93
124
155
186
217
248
279
305

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
214.1 1037.4 25% 3.174e-55 82% NC_004667
123.0 123.0 32% 8.924e-28 52% NC_022072
76.7 76.7 32% 7.62e-14 35% NC_029783
55.6 55.6 31% 1.686e-07 33% NC_005065
55.6 103.4 17% 1.686e-07 39% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 6198 to 6494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 89/99(90%) 0/99(0%) Minus/Plus
Query        1  MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  297
                MHQ LLQLGVFATGASEGLFF DIN IPFIN EK FRMDC VFVPKKESV+YTSKSYR PLD CY LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP
Subject   6198  MHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  6494

Range 2: 6198 to 6494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.2 bits(424) 0.0 82/99(83%) 0/99(0%) Plus/Minus
Query        1  WPFGQ*SHYRLILTTNDLFRVTLFRSPYGH*GQEVAII*RSPV*FRSVYNAFLLWNKNRTIHPKRLLAVYEWYVIYVCEKEAFRRAGCEDA*L**GLMH  297
                WPFGQ S+Y  +LT NDLFRVTLFRSPYGH*GQ+VA I*R+PV FRSVYNAFLLWNKN TIHPK LL VYEWY+IYV +KEAFRRAGCEDA*L** LMH
Subject   6198  WPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMH  6494

Range 3: 6199 to 6492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 83/98(85%) 0/98(0%) Minus/Plus
Query        3  CIKPYYN*ASSQPARRKASFSQT*ITYHS*TARRRLGWIVLFLFQRRKALYTLLNHTGDR*MIATSCPQ*P*GERKSVTLKRSLVVRISR**DHCPKG  296
                CIK YYN*ASSQPARRKASF +T*I YHS*T RR LGWIVLFLFQRRKALYTLLN TG R*M AT CPQ*P*GERKSVTLKRSL VR ++**D CPKG
Subject   6199  CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKG  6492

Range 4: 6197 to 6442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.9 bits(371) 0.0 74/82(90%) 0/82(0%) Plus/Minus
Query       53  FSG*HFSVPLTVIEDKK*QSSNGHLYDLEVYITLSFFGTKTGQSILNAFSLFMNGM*FMSAKKRPSDAPVAKTPSCSKA*CI  298
                FSG*HFSVPLTVIED K*Q+SNGHLYDLEVY TLSFFGTKT QSILN FSLFMNG+*FMS KKRPSDAPVAKTPSCSK *CI
Subject   6197  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CI  6442

Range 5: 6265 to 6492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 62/76(82%) 0/76(0%) Plus/Minus
Query        3  AFWTVISLPAYPYH*RPFQGNTFPFPLRSLRTRSSNHLTVTCMI*KCI*RFPSLEQKQDNPS*TPSRCL*MVCDLC  230
                AFWT I L   PY *RPFQGNTFPFPLRSLRT SS HLT TC I*KCI RFPSLEQKQ NPS*TPS CL*MV DLC
Subject   6265  AFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLC  6492

Range 6: 6266 to 6493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 62/76(82%) 0/76(0%) Minus/Plus
Query        2  HKSHTIHKQREGV*DGLSCFCSKEGKRYIHF*IIQVTVRXXXXXXLNDRKGNGKVLP*KGR*W*G*AGSEITVQKA  229
                HKS TIHKQ EGV*DGL CFCSKEGKR IHF*I+QV+VR LLL+VLNDRKGNGKVLP*KGR* *G   S+I VQKA
Subject   6266  HKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKA  6493

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 7262 to 7558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 51/99(52%) 0/99(0%) Minus/Plus
Query        1  MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  297
                MH+ LLQ G FA+GA EG+F+ D++ IPFIN EK FR       P+K  + YT ++YR PLD C+ LS++     EKCY   VVSG   PVVRS  KRP
Subject   7262  MHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRP  7558

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 7011 to 7307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 35/99(35%) 0/99(0%) Minus/Plus
Query        1  MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  297
                +H+  L   + A    E + + D+N IPF N EK F M      P +  + YT+ SYR P D CY LS M     + CYP  V + +D+  +RS+   P
Subject   7011  LHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIP  7307

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 4803 to 5090 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 32/96(33%) 0/96(0%) Minus/Plus
Query       10  MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLS  297
                +H   L++     GA E   + D   IPFIN  ++F     V    K  VI  + SYR P D C  LS    +    CYP  V  G      RS+S
Subject   4803  VHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVS  5090

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 6733 to 6924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 25/64(39%) 0/64(0%) Plus/Minus
Query       80  LTVIEDKK*QSSNGHLYDLEVYITLSFFGTKTGQSILNAFSLFMNGM*FMSAKKRPSDAPVAKT  271
                ++VI+D  * +S GHLY++ VY   S   +     + N FSL +NG+*F+S     S  P+A T
Subject   6733  ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATT  6924

Range 2: 6845 to 7003 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 24/53(45%) 0/53(0%) Minus/Plus
Query        1  KESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP  159
                +E + YT  SYR P D CY LSSMT     K YP  V    D   +RS  K P
Subject   6845  EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVP  7003

Nucleotide Sequence (425 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
425

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
276.9 1521.2 29% 6.928e-74 87% NC_004667
137.2 309.0 25% 4.303e-42 58% NC_022072
99.1 203.4 24% 1.908e-28 45% NC_016509
100.0 231.5 34% 3.98e-29 39% NC_029783
70.3 124.6 25% 3.755e-17 50% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 10266 to 10685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 122/140(87%) 0/140(0%) Plus/Minus
Query        4  SPKVENR***VFYSRLS*GIEGCGCRFVNNTSNRYTKTFQCLNNEASFKGVIISRYRYNCGCNRSRRIPFALQYQGSQE*THHVNDPQ*GVRSGT*TSD**GASAVYLYGVCGF*FLNVTFDVIPRHTYPPFRVNIQPSL  423
                SPK++NR***VFYSRLS*GIEGCG RFVNNTSNRYTKTF  LNNEASFKGVI+SRYRYN  CNR RRIPFALQYQGSQE*T++VNDPQ*GV SGT*TS+**GASAVYL+GVC F*FL+V FDVIPRHT PPFRVNIQPSL
Subject  10266  SPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVAFDVIPRHTCPPFRVNIQPSL  10685

Range 2: 10266 to 10688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.9 bits(574) 0.0 139/141(99%) 0/141(0%) Minus/Plus
Query        1  EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDXXXXXXXXXXXXGPDTLLRVVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG  423
                EGRLYVNPKRW GVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDV+CLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG
Subject  10266  EGRLYVNPKRWAGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG  10688

Range 3: 10265 to 10687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
257.7 bits(556) 0.0 140/141(99%) 0/141(0%) Plus/Minus
Query        2  PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVSGXXXXXXXXXXXXLSIFTVYVGFNFST*RSTLSLVTPTHLFGLTYNLPS  424
                PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTP HLFGLTYNLPS
Subject  10265  PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTPAHLFGLTYNLPS  10687

Range 4: 10409 to 10687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.6 bits(403) 0.0 82/93(88%) 0/93(0%) Minus/Plus
Query        2  TGHLIEGR*RDVFILESLDTGVRKVYVYYGYSRSCNGTG*L*LL*TKLRC*GTERSWYTG*RCC*RTDSRSPLFLS*VASRRPIISGFRLWGR  280
                T HLIEGR*R++FILESLDTGVRKVYVY GYS  CNGTG*L*LL*TKLRC*G +RSWYTG*RCC*RTD RSPLFLS*VASRRPIISGF  WGR
Subject  10409  TRHLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGR  10687

Range 5: 10265 to 10357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 29/31(94%) 0/31(0%) Minus/Plus
Query      332  RGKVVC*PEKVGRCDEG*RRTLR*EIKTHIH  424
                RGKVVC*PEKVGRCDEG*RRTLR EIKT+IH
Subject  10265  RGKVVC*PEKVGRCDEG*RRTLRREIKTYIH  10357

Range 6: 10264 to 10485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 67/74(91%) 0/74(0%) Minus/Plus
Query      204  *REGCMLTRKGG*V*RGITSNVTLRN*NPHTP*R*TAEAPY*SEV*VPDRTPY*GSLT*CVYS*EP*YWSAKGI  425
                *REGCMLTRKGG V*RGITSN T RN*N HTP*R*TAEAPY* EV*VPD+TPY*GSLT* VYS*EP*YWSAKGI
Subject  10264  *REGCMLTRKGGQV*RGITSNATSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI  10485

Range 7: 10531 to 10686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 48/52(92%) 0/52(0%) Minus/Plus
Query        3  ITPLNEASLLRH*KVLVYRLEVLLTNRQPQPSIP*LSRE*KTYY*RFSTLGE  158
                ITPLNEASLLR *KVLVYRLEVLLTNR+PQPSIP*LSRE*KTYY*RF  LGE
Subject  10531  ITPLNEASLLRR*KVLVYRLEVLLTNRRPQPSIP*LSRE*KTYY*RFLILGE  10686

Range 8: 10408 to 10686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.9 bits(323) 0.0 81/93(87%) 0/93(0%) Plus/Minus
Query        3  LPQSRKPLIIGLLLAT*LRNRGLRLSVR*QHL*PVYQDLSVPQQRSFV*RSYNXXXXXXXXXXXX*TYTFRTPVSRLSRINTSRQRPSIRCPV  281
                LPQ++KPLIIGLLLAT*LRNRGLR SVR*QHL*PVYQDL  PQQRSFV*RSY+QPVPLQ  L*P *TYTFRTPVSRLSRIN  RQRPSIRC V
Subject  10408  LPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*RSYSQPVPLQQLL*PS*TYTFRTPVSRLSRINILRQRPSIRCLV  10686

Range 9: 10264 to 10353 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 27/30(90%) 0/30(0%) Plus/Minus
Query      336  MWVLISQRNVRRYPSSHLPTFSG*HTTFPL  425
                M VLIS+R+VRRYPSSHLPTFSG*HTTFPL
Subject  10264  M*VLISRRSVRRYPSSHLPTFSG*HTTFPL  10353

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 4

Range 1: 11381 to 11656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 65/92(71%) 0/92(0%) Minus/Plus
Query        1  DTLLRVVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG  276
                D  L V D++CLFLR LI E E  T  TVT+AVVTVPADYNSFKR F+V AL+GLGIPV+ ++NEPTAAALYSLAKS ++D+L+AVFDFGGG
Subject  11381  DIKLSVTDIICLFLRGLIKEAESETGKTVTSAVVTVPADYNSFKRGFIVTALRGLGIPVKAIINEPTAAALYSLAKSGLDDMLIAVFDFGGG  11656

Range 2: 11237 to 11335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 19/33(58%) 0/33(0%) Minus/Plus
Query      322  GRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  420
                GRLY+NPKRWVGV   N   +++KLKP Y+V++
Subject  11237  GRLYLNPKRWVGVNAINFSSFMKKLKPAYSVEL  11335

Range 3: 11380 to 11655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 57/92(62%) 0/92(0%) Plus/Minus
Query        2  PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVS  277
                PPPKSKTA N SS+ DLA E +AAAVGS    LTGIPRP  A T K  L EL*SAGTVTTA VTV  V LS S I   +N+HI S T + +S
Subject  11380  PPPKSKTAINISSSPDLASEYKAAAVGSFMMALTGIPRPRRAVTMKPLLNEL*SAGTVTTAEVTVFPVSLSASLINPRRNRHIISVTDSLIS  11655

Range 4: 11233 to 11274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 9/14(64%) 0/14(0%) Plus/Minus
Query      383  TPTHLFGLTYNLPS  424
                TPTH  G  YNLP+
Subject  11233  TPTHRLGFRYNLPT  11274

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 10198 to 10467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 47/90(52%) 0/90(0%) Minus/Plus
Query        1  LLRVVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG  270
                L+RVVD++ LF++ ++LE E      V+  V TVPA+YNSFKRSF+  AL+GLG P+R ++NEPT+AALY   +        AVFDFGGG
Subject  10198  LVRVVDLVFLFVKGILLETEEAVGKAVSGVVCTVPAEYNSFKRSFLGVALEGLGKPLRALINEPTSAALYGAVRGGALKETYAVFDFGGG  10467

Range 2: 10051 to 10149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 18/33(55%) 0/33(0%) Minus/Plus
Query      322  GRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  420
                G LY+NPKRWVGV   N +    KL P Y VK+
Subject  10051  GGLYINPKRWVGVDGYNFQAVKRKLNPEYEVKL  10149

Range 3: 10203 to 10466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 40/88(45%) 0/88(0%) Plus/Minus
Query        2  PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTL  265
                PPPKSKTA    S   L    +AA VGS    L G+P P  A+  KLRL EL SAGTV T   T +    S SS      +   STTL
Subject  10203  PPPKSKTAYVSFSAPPLTAPYKAADVGSFMRALNGLPNPSRATPKKLRLNELYSAGTVQTTPDTALPTASSVSSNIPFTKRKTKSTTL  10466

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 4

Range 1: 10625 to 10885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 45/87(52%) 0/87(0%) Minus/Plus
Query        1  VVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG  261
                + D++ LFL+ LI E E  T   V     +VPA YNSFKRSF++ ALKGLG P+R +VNEPTAA L  ++ S  ++ +  VFDFGGG
Subject  10625  ITDLIALFLKGLITEAETQTGVAVVGVTCSVPAKYNSFKRSFLMTALKGLGKPLRALVNEPTAAGLLGMSVSSNDNTVYGVFDFGGG  10885

Range 2: 10463 to 10564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 17/34(50%) 0/34(0%) Minus/Plus
Query      322  EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  423
                EG LYVNPKRW+G+   N   +++KLKP + V +
Subject  10463  EGLLYVNPKRWIGMNSRNKHIFMDKLKPQHEVLV  10564

Range 3: 10630 to 10884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 38/85(45%) 0/85(0%) Plus/Minus
Query        2  PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITS  256
                PPPKSKT     S  D       AAVGSLT+   G P+PF A   KL L EL  AGT      T   V +S S IK L+ + I S
Subject  10630  PPPKSKTPYTVLSLLDTLIPNNPAAVGSLTSARNGFPKPFKAVIRKLLLNELYFAGTEQVTPTTATPV*VSASVIKPLRKRAIRS  10884

Range 4: 10475 to 10558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 11/28(39%) 0/28(0%) Plus/Minus
Query      328  YGVCGF*FLNVTFDVIPRHTYPPFRVNI  411
                Y V  F*F++    +   HT PP RV++
Subject  10475  YFVLRF*FIHKYMLIPRIHTNPPLRVDV  10558

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 3

Range 1: 9658 to 9870 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 37/71(52%) 0/71(0%) Minus/Plus
Query       49  VVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAK  261
                VVD++ LF+R + +  E      V + V TVPADYNS+KRSF++E+ K L   +  VVNEPTAAALYS  K
Subject   9658  VVDLIALFVRGISVAIENQYGENVVSLVCTVPADYNSYKRSFLLESSKLLDQEIIAVVNEPTAAALYSALK  9870

Range 2: 9493 to 9570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 13/26(50%) 0/26(0%) Minus/Plus
Query      346  EGRLYVNPKRWVGVTRDNVERYVEKL  423
                +G LY + KRWVGV + N   Y  KL
Subject   9493  DGWLYKDIKRWVGVNKYNFNEYKTKL  9570

Range 3: 9898 to 9924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 7/9(78%) 0/9(0%) Minus/Plus
Query        1  LAVFDFGGG  27
                +AV+DFGGG
Subject   9898  VAVYDFGGG  9924

Nucleotide Sequence (1013 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
102
204
306
408
510
612
714
816
918
1013

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
742.4 3794.0 36% 0 80% NC_004667
195.8 195.8 33% 5.531e-49 29% NC_022072
48.7 48.7 7% 0.0001047 36% NC_016417
47.3 47.3 7% 0.0002714 34% NC_016081
46.4 46.4 7% 0.0005122 34% NC_016416

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 12160 to 13167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
742.4 bits(1614) 0.0 309/336(92%) 0/336(0%) Minus/Plus
Query        3  LGIQEGKYVDVTQNLESTIVPLRVMEIKKRRVSAHVALPKVVSAYVDLYTNLQELLSDEVTKARTDTVSAYAADSMAFLVKMLPLTAREQWLRDMLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIKSFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVEDRAYRISEKRGINAQRILCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRSMINHADHASIIHYIKTNENQVTGTTLP  1010
                + +Q GKYVDVTQNLESTIVPLRVMEIKKRR SAHV+LPKVVSAYVD YTNLQELLSDEVT+ARTDTVSAYA DSMAFLVKMLPLTAREQWL+D+LGYLLVRRRPANFSYD+RVAWVYDVIATLKLVI+ FFNKDTPGGIKDLKP VPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENY+LRLTPV ALII+L+YYS+YGTNATRIKRRPDFLNVRI+G+VEKVSLRGVEDRA+RISEKRGINAQR+LCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVR+ IN ADHASIIHYIKTNENQVTGTTLP
Subject  12160  VSVQVGKYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPCVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQVTGTTLP  13167

Range 2: 12168 to 13169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
628.4 bits(1365) 0.0 281/334(84%) 0/334(0%) Minus/Plus
Query        1  SGGEVCGRNAEFRKYDRAVKSYGNKEEASIGARCFTEGGICIRRSLYELAGVAVR*SN*GQNRYSFGLRC*LYGFLS*DVAPDSP*AVVERHVRISASTKTTGKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTICAYRVLRPLSRAFILFL*VEL*DDDR*RGKDMPGDRREVGAPSNGGKL*VKINPSGGLNNYADLLLRLRHKRYQD*TTPRFPQCEDKRKSRESFVTGGRRSRL*NIRKARDKRSTYIV*VL**SHMSG*ATLRHSQKQLEDAELCRWYVGV*HG*LYNF*GEKYDQPCRSR*HYTLY*DERKPGYRDYSTT  1002
                SG EVCGRNAEFRKYDRAVKSYGNKE+  I    FTEGGI +RR LYELAG+AV *SN*GQNRYSFG+R  LYGFLS*DV PD  *AVV+R  RISA T+TT KFFLR KSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKT+CAYRV+RPLSRAF+LFL*V+L DDDR*RGKDMPGDRREVGAPSNGGKL*VKI+PS GLNNY  +LL LRHKRYQD* TP FPQCEDK KSRE FVTGGRRS L*NIRKARDKRST I+*VL* SHMSG*ATLRHSQ+QLEDAELCR  V V*HG*LYNF*GEKYDQ  RSR*HYTLY DERKPGYR+YSTT
Subject  12168  SGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKLRDDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPGYRNYSTT  13169

Range 3: 12648 to 13169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.5 bits(752) 0.0 162/174(93%) 0/174(0%) Plus/Minus
Query        1  CGRVVPVTWFSFVLI*CIMLA*SAWLIILLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNIR*AFIPRFSDIL*ARSSTPRNETFSTFPLILTLRKSGRRLILVAFVP*TE**ISIIIKAATGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNL  522
                CGRVVPVTWFSFVLI*CIMLA*SA LI+ LTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHN R*AFIPRFSDIL ARSSTPRNETFST P ILTLRKSGR LILVAFVP* E*  SIIIKA TGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNL
Subject  12648  CGRVVPVTWFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNL  13169

Range 4: 12168 to 12605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
296.6 bits(641) 0.0 132/146(90%) 0/146(0%) Plus/Minus
Query      565  IGTYGFKSLIPPGVSLLKNDFMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPNMSLNHCSRAVRGNILTKKAIESAA*AETVSVLALVTSSDSNSCKFV*RSTYADTTFGKATCADTRLFFISITLNGTIVLSKFCVTSTYFPS*  1002
                IGT+GFKSLIPPGVSLLKN+ MTSLSVAITSYTQATL S*EKFAGRLRTSRYP+ S NHCSRAVRGNILTKKAIES A AETVSVLALVTSSDSNSCKFV*+ST ADTTFGK TCAD RLFFISITLNGTIVLSKFCVTSTYFP+*
Subject  12168  IGTHGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYFPT*  12605

Range 5: 12475 to 13167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
460.6 bits(999) 0.0 200/231(87%) 0/231(0%) Plus/Minus
Query        3  W*SSPGNLVFVRLNIVYNASVICMVDHTSHLRSYTISRVIRQRTIYITQRLPIVSANAVMSPSQTCEITIVPTQYTLSVYPALF*YSIGAIFYPP*RNFLDFSSYPHIEEIWASFNPGSVCAVNGVVNQHNY*GRHWG*S*PIIFLH*TAHQLLGDLRAYLSPFTCRHLITQPREIG*KLVKGVEGLYRHIWF*VFNTPGCVLVEKRFYDQLERSDHVIYPSYSYVVGKIC  695
                W*SS GNLVFVRL+IVYNASVIC VD  SHLRSYTISRVIR R +YITQRLPIV ANAVMSPSQTCEI IVPT YTLSVYPALF*YS G IFYPP*RN LD S YPHIEEI ASFNPGSVCAVNGVV Q+NY*G HWG S* I+FLH*TAHQLLGDLRAYLSPFTCRHL+T PREIG KLVKGVE LYRH  F*VFNTPGCVLVEK+ YDQLERSDHVIYPSYSYVVGKIC
Subject  12475  W*SSSGNLVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRHTRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKIC  13167

Range 6: 12166 to 12432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 71/89(80%) 0/89(0%) Plus/Minus
Query      738  PLLTGCQGQHLN*ESHRVSSVGRNCIGSGLSYFI*QQLLQVRIKIYVCRYHLR*SNVRRYSPLLYFHNS*RHDRTF*ILRYVHILPLLN  1004
                PLLT  QG HLN*ESHRV SV RNCIGSG SYFI QQ LQVRIKIYV  YHLR*+N+   S  LYFHNS*RHDRTF*ILRYVHILP LN
Subject  12166  PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPYLN  12432

Range 7: 12167 to 13168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
594.4 bits(1291) 0.0 280/334(84%) 0/334(0%) Plus/Minus
Query        2  VVE*SR*PGFRSS*YSV*C*RDLHG*SYFSP*KLYNQPCHTPTYHLHNSASSNCFCECRNVA*PDM*DHYSTYTIYVERLSRAFLIFYRRDLLPPVTKLSRLFLLSSH*GNLGVV*SW*RLCRKRSSKSA*LLRPPLGLILTYNFPPLDGAPTSRRSPGISFPLYLSSSHNST*RNRMKARERGRRTL*AHMVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLCRRKNLPVVFVLADILTCLSTTAHGLSGATS*LRKP*SQQRRPKLYRFWP*LLHLTATPASSYKDLRMQIPPSVKQRAPILASSLFP*LLTARSYFLNSALRPHTSPPE  1003
                VVE* R*PGFRSS*YSV*C*RDL  *SYFSP*KLYNQPCHT T  LHNSASSNC CECRNVA*PDM*D YSTY I+VERLSRAFLIF R DLLPPVTK SRLF LSSH*GN GV *SW*RLCRK SS   *LLRP LG ILTY+FPPLDGAPTSRRSPGISFPLYLSSS N T*RNR KARERGR TL*AH VLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLL RRKNL VV V ADIL  L TTAH  SG TS*LRKP*S+ R PKLYRFWP*LLH TA PASSYK+LR +IPPSV     IL  SLFP*LLTARSYFLNSALRPHTS PE
Subject  12167  VVE*FR*PGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPE  13168

Range 8: 12167 to 13015 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
501.0 bits(1087) 0.0 237/283(84%) 0/283(0%) Minus/Plus
Query      155  FRRGSMWT*RRI*KVRSCR*ELWK*RRGEXXXXXXXXXXXLHT*IFIRTCRSCCQMK*LRPEPIQFRPTLLTLWLS*LRCCP*QPVSSG*ETC*DIC*YEDDRQIFPTT*E*LGYMT*SLRSSWS*NRFSTRTHPGVLKT*NHMCL*SPSTPFTSFHPISLG*VMR*RQVKGERYARRSPRSWCAV*WRKIIG*D*PQWRP**LC*FTTPFTAQTLPGLNDAQISSM*G*EEKSRKFRYGG*KIAPIEYQKSAG*TLNVYCVGTIVISHVWLGDITAFAETIG  1003
                FR GSMWT*RRI*KVRSCR*ELWK*R+ E +  L+YRRWY  T*IFIRTCR+CC+MK*L PEPIQFR TL TLWLS*LRC P*  VSSG*+TC*DIC Y DD+QIFPTT*E*LGYMT*SLRSSWS*+ FSTRTHPGVLKT*N +CL*S STPFTSF PISLG*V R*RQVKGERYARRSPRSWCAV*WRK I *D*PQ  P**L  +TTPFTAQTLPGL DA+ISSM*G* E+SR+FRYGG*KI P+EYQKSAG*TLNVY VGTI ISHVWLGDITAFA TIG
Subject  12167  FR*GSMWT*RRI*KVRSCR*ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRVCL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REESRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIG  13015

Range 9: 13058 to 13168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 32/37(86%) 0/37(0%) Minus/Plus
Query        2  LIV*LLR*EV*STMQITLALYTILRRTKTRLPGLLYH  112
                LIV*LLR*E+ ST QITLALYTI RRTKTRLP LLYH
Subject  13058  LIV*LLR*EIRSTPQITLALYTISRRTKTRLPELLYH  13168

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 13115 to 14110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.8 bits(421) 0.0 97/332(29%) 0/332(0%) Minus/Plus
Query       15  LGIQEGKYVDVTQNLESTIVPLRVMEIKKRRVSAHVALPKVVSAYVDLYTNLQELLSDEVTKARTDTVSAYAADSMAFLVKMLPLTAREQWLRDMLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIKSFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVEDRAYRISEKRGINAQRILCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRSMINHADHASIIHYIKTNENQVTG  1010
                L +  GK   ++    + +VPL  + ++KR        P VV +++  Y ++ + L D+    R   +  Y  + +A++  +  +     ++   +   L+R +P N +YD RVAW   V + L   I   F +     +   +P+VP+E  D  HE +SYFSR++      K   + PE+    +  +++EN  +      A  I+++YYS+YGTNA RI RRP  L V +R +   + L  VE       +   IN  R L R Y+ LT   R  + I RNNW+TL  +DG +A+DT + +   +       D+   + +IK+NE +V G
Subject  13115  LSVYLGKATGLSDLGPNLVVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGRVVSVSVTSARPFVPLEGTDQLHESNSYFSRVALTQGRSKQSSVVPELMMSAIDAVLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNEKRVEG  14110

Grapevine leafroll-associated virus 6, complete genome

Sequence ID: Length: 13807 Number of Matches: 1

Range 1: 11578 to 11778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 24/67(36%) 0/67(0%) Minus/Plus
Query      273  EIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVED  473
                E+  KLV  L+ +N  L +T   A++++L  Y  Y TNA R    P  L+  I+ +V+KV   GV++
Subject  11578  ELTRKLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE  11778

Grapevine leafroll-associated virus 5, complete genome

Sequence ID: Length: 13384 Number of Matches: 1

Range 1: 11141 to 11341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 23/67(34%) 0/67(0%) Minus/Plus
Query      273  EIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVED  473
                E+  KLV  L+  N  + +T   A++I+L  Y  Y TNA R    P  L+  I+ +V++V   GV++
Subject  11141  ELTRKLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE  11341

Grapevine leafroll-associated virus 4, complete genome

Sequence ID: Length: 13830 Number of Matches: 1

Range 1: 11588 to 11788 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 23/67(34%) 0/67(0%) Minus/Plus
Query      273  EIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVED  473
                E+  KLV  L+ +N  L ++   A++++L  Y  Y TNA R    P  L+  I+G V  V   GV++
Subject  11588  ELTRKLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN  11788

Nucleotide Sequence (354 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
354

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
217.8 1157.3 25% 3.242e-56 87% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 8332 to 8643 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 96/104(92%) 0/104(0%) Plus/Plus
Query       40  QFCRLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRYAFSIKRGLSR*PRYSVSVPRFFVRLIPKGRRTYLSLPVCRLLLGVPSVRLIPVALLLEVGIKD  351
                QFCRLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASR+AFSIKRG SR PRYSVSVPRFFVRLIPKGRRTYLS    RLLLGVPSV+LIPVALLLEVGIKD
Subject   8332  QFCRLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRWPRYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKD  8643

Range 2: 8332 to 8643 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.8 bits(456) 0.0 90/104(87%) 0/104(0%) Minus/Minus
Query       40  VFNTHFKKECHRY*PHGWHA*EKTTNWKTEISTTTLRY*PHEEPRHRNTIAWLTR*TPLYRKGITRSFPP*YSRLQGQQGKRLRPLNRAHVKIHAIVVI*PTEL  351
                VFNTHF+KECHRY* HGWHA*EKT    TEISTTTLRY*PHEEPRHRNTIAW TR TPLYRKG TRSFPP* S LQGQQGKRL PLNRAH++IHAIVVI*PTEL
Subject   8332  VFNTHFEKECHRY*LHGWHA*EKTKK*ITEISTTTLRY*PHEEPRHRNTIAWPTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNRAHIEIHAIVVI*PTEL  8643

Range 3: 8345 to 8644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.6 bits(377) 0.0 87/100(87%) 0/100(0%) Plus/Plus
Query       53  YITTIA*ILTCALFRGRSRFPCWP*RREY*GGKLLVMPFR*RGVYRVSHAIVFLCLGSS*G*YRRXXXXXXXXXXXXXS*ACHP*G*YRWHSFLKWVLKT  352
                YITTIA*I  CALFRG SRFPCWP*R+E+*GGKLLV+PFR*RGV RV HAIVFLCLGSS*G*YRRVVVLISV  F VFS*ACHP* *YRWHSF KWVLKT
Subject   8345  YITTIA*ISMCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFSKWVLKT  8644

Range 4: 8333 to 8539 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.9 bits(310) 0.0 63/69(91%) 0/69(0%) Minus/Minus
Query       41  PSVLTSRRTEAQKHYSVANAINPSLSKRHNEKLSTLIFSPSRPARKATPSSE*GARQDSRYCGNITYRT  247
                PSVLTSRRTEAQKHYSVANAINPSLSKR NEKLSTL F PSRPARKAT SSE*GA +DSRYCGNITYRT
Subject   8333  PSVLTSRRTEAQKHYSVANAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAHRDSRYCGNITYRT  8539

Range 5: 8580 to 8642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 20/21(95%) 0/21(0%) Minus/Minus
Query      288  SLIPTSRRSATGINLTDGTPK  350
                SLIPTSRRSATGIN TDGTPK
Subject   8580  SLIPTSRRSATGINFTDGTPK  8642

Range 6: 8346 to 8645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 88/100(88%) 0/100(0%) Plus/Plus
Query       54  ILPQ*RES*RAPYSEDGVAFLAGLEGENIKVESFSLCLFDKEGFIALATL*CFCASVLREVNTEGXXXXXXXXXXXXXXRRAIREVNTGGTPS*SGY*RP  353
                ILPQ*RES  APYSED VAFLAGLEG+N KVESFS CLFDKEG IALATL*CFCASVLREVNTEGSSYLSQ    SSSLRRAIREVNTGGTPS SGY*RP
Subject   8346  ILPQ*RESRCAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIALATL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPSRSGY*RP  8645

Range 7: 8334 to 8540 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 65/69(94%) 0/69(0%) Minus/Minus
Query       42  PFGINLTKNRGTETL*RG*RDKPLFIEKA*REAFHLNILAFKASKESDSVL*IGRTSRFTLLW*YNLQN  248
                PFGINLTKNRGTETL*RG RD PLFIEKA REAFHL ILAFKASKESDSVL*IGRTSRFTLLW*YNLQN
Subject   8334  PFGINLTKNRGTETL*RGQRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNLQN  8540

Range 8: 8588 to 8644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/19(95%) 0/19(0%) Minus/Minus
Query      296  GL*YPLQEGVPPVLTSRMA  352
                GL*YPL+EGVPPVLTSRMA
Subject   8588  GL*YPLREGVPPVLTSRMA  8644

Nucleotide Sequence (1304 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
131
262
393
524
655
786
917
1048
1179
1304

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
901.9 4783.0 27% 0 65% NC_004667
72.4 120.5 8% 2.065e-20 41% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 20

Range 1: 3309 to 4604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
901.9 bits(1962) 0.0 395/432(91%) 0/432(0%) Plus/Minus
Query        3  SRNTWGGFLLDMWCGARNGXXXXXXXXXXLSRYFGLGDFWNSCWWYTLRTGLYWFPVAFVGCGLCCVVIYSSPPFLNRRITDVAFWKQPLVVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDVSVLHASR*MGLFFTSNFPVGVNPHVAHICDTIIA*DTRSGSITIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIIHIPPLYRWDVSKLRYGVVKQTPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHSRRKPSSHD*RSTGYCARXXXXXXXXXL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYESDEVI*GNFTPK  1298
                SRNTWGGFL+D W GARN R+ +F FHFFLS Y GLGD WN   W T +TGLYW PVAFV  GLCCV I SS PFL RR+TD AFW+QP  VHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLD+SVLHASR*MGLFFTSNFPVG NPHVAHICD IIA*DTRSGSI IVTGNRFMLSPRWTSTFVIVKVPVIPKRLI+HIPPLYRWDVSKLRYGVVKQ PYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGH RRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYES EVI*GNFTPK
Subject   3309  SRNTWGGFLIDDWRGARNSRQWYFLFHFFLSMYLGLGDLWNISLWRTHKTGLYWLPVAFVDRGLCCVTICSSSPFLCRRLTDDAFWEQPFAVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPHVAHICDNIIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPK  4604

Range 2: 3526 to 4047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
397.0 bits(860) 0.0 170/174(98%) 0/174(0%) Plus/Minus
Query      560  KWIHHYRHREPLHAESQMDQHLRHSQSPGNT*ASHHTHSSPLPVGRKQVEVWCR*ANPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSQPTKTLFARLKIHRILC  1081
                KWIH YRHREPLHAESQMDQHLRHSQSPGNT*ASH THSSPLPVGRKQVEVWCR*A+PL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RS PTKTLFARLKIHRILC
Subject   3526  KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC  4047

Range 3: 4090 to 4386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 92/99(93%) 0/99(0%) Plus/Minus
Query      221  PLLESAHHRCRFLEATPCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRRKCIARFEVNGSLLHQ*LPRWC*SP  517
                P L SA HR RFL AT CRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPR KCIARFEVNGSLLHQ*LPRWC*SP
Subject   4090  PFLVSAPHRRRFLGATLCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP  4386

Range 4: 3310 to 3483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 57/58(98%) 0/58(0%) Plus/Minus
Query     1124  TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRK**SHLRKLHSK  1297
                TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRK *SHLRKLHSK
Subject   3310  TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRKW*SHLRKLHSK  3483

Range 5: 4367 to 4606 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 55/80(69%) 0/80(0%) Plus/Minus
Query        1  RVVTLGAGFSSTCGVALGTVVGGTSSFTSF*AGISDLATFGTAAGGTLSGLDCTGSLWPSSAAACAVLSSTALPPS*IGA  240
                RVVTLGAGFSST GVA  TV  GTS FTSF*A  SD  TFG +A G L+ LDCTGSL PS  A CAVL S ALP S +GA
Subject   4367  RVVTLGAGFSSTIGVAPETVANGTSCFTSF*ACTSDWVTFGISACGELTRLDCTGSLSPSLTAVCAVLPSAALPLSCVGA  4606

Range 6: 3311 to 4303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
734.7 bits(1597) 0.0 325/331(98%) 0/331(0%) Minus/Plus
Query      304  LE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGCDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGFA*RHHTSTCLRPTGRGEECV**DA*VLPGL*L*RRCWSIWDSA*SGSR*R**WIHF*CLKL*WCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLRRGRGCPVCSCGGKTR*SVGFWYR*RYGFXXXXXXXXXXCLSPTV*W  1296
                LE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVG DRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKG A*RHHTSTCLRPTGRGEECV *DA*VLPGL*L*RRCWSIWDSA*SGSR*R* WIHF*CLKL* CHKCARRGD*HQRGSYW*RRDPFTSKRAIHL RGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W
Subject   3311  LE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*CCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W  4303

Range 7: 4499 to 4606 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 25/36(69%) 0/36(0%) Minus/Plus
Query        1  VRNTCSERSETRSAADDRSERHTTCRGETRPKCYDS  108
                VR TCSERSETRS   D   RH   R ETRPKCYDS
Subject   4499  VRGTCSERSETRSTIGDCFGRHANRR*ETRPKCYDS  4606

Range 8: 4340 to 4390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/17(65%) 0/17(0%) Minus/Plus
Query      217  VASRKRHR*CADSRRGE  267
                VA RKR R* AD+R+G+
Subject   4340  VAPRKRRR*GADTRKGK  4390

Range 9: 3604 to 3918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.7 bits(543) 0.0 104/105(99%) 0/105(0%) Minus/Plus
Query      689  NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GVCLTTPYLNLLTSH  1003
                NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*G CLTTPYLNLLTSH
Subject   3604  NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH  3918

Range 10: 3310 to 3567 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 85/86(99%) 0/86(0%) Minus/Plus
Query     1040  FGVKFP*MTSSLSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF  1297
                FGVKFP*MTS LSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF
Subject   3310  FGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF  3567

Range 11: 3958 to 4221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 84/88(95%) 0/88(0%) Minus/Plus
Query      386  ITGTLTMTKVLVHLGLSMKRFPVTIVMDPLLVSQAMMVSQMCATWGLTPTGKLLVKKRPIHLEACNTLTSRKRLPRLQLWRKDKVIRR  649
                ITGTLTMTKVLVHLGLSMKRFPVTI MDPLLVSQAMM+SQMCATWGL PTGKLLVKKRPIHLEACNTL SRKRLPRLQLWRKDKVIRR
Subject   3958  ITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMMLSQMCATWGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR  4221

Range 12: 4273 to 4515 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 61/81(75%) 0/81(0%) Minus/Plus
Query       92  STMSFTNSLVGKRLVRLRWTTRGCFQKATSVMRRFKKGGEL*MTTQHKPQPTKATGNQYSPVLRVYHQQLFQKSPSPKYLL  334
                STMSFTNSLVGKRLVRLRWT +GC QKA+SV RR KKG EL M TQHKP+ TKATG+QYSPVL V H+ +FQ+SPSP+Y+L
Subject   4273  STMSFTNSLVGKRLVRLRWTAKGCSQKASSVRRRHKKGEELQMVTQHKPRSTKATGSQYSPVL*VRHRLIFQRSPSPRYML  4515

Range 13: 4506 to 4604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.5 bits(113) 0.0 24/33(73%) 0/33(0%) Minus/Plus
Query        3  IPAQKEVKLEVPPTTVPSATPHVEEKPAPSVTT  101
                + AQKEVK EVP  TV  ATP V+EKPAPSVTT
Subject   4506  VHAQKEVKQEVPLATVSGATPIVDEKPAPSVTT  4604

Range 14: 3305 to 3940 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
456.5 bits(990) 0.0 210/212(99%) 0/212(0%) Plus/Minus
Query      667  YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVSXXXXXXXXXXXXIPRLYFHAIGAAPKDATNIPISTLFRNTKVMKSFKETSLQKS  1302
                YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPISTLFRNTKV+KSFKETSLQ S
Subject   3305  YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPISTLFRNTKVVKSFKETSLQNS  3940

Range 15: 3983 to 4159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 58/59(98%) 0/59(0%) Plus/Minus
Query      448  VYCTLRGEWXXXXXXXXXXXXIPTSRTFVTPS*LETLEVDPSLSSPGTASC*VPDGPAP  624
                VYCTLRGEWVSSSPVTSPLVLIPTSRTFVT S*LETLEVDPSLSSPGTASC*VPDGPAP
Subject   3983  VYCTLRGEWVSSSPVTSPLVLIPTSRTFVTTS*LETLEVDPSLSSPGTASC*VPDGPAP  4159

Range 16: 4202 to 4315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 38/38(100%) 0/38(0%) Plus/Minus
Query      292  RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL  405
                RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL
Subject   4202  RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL  4315

Range 17: 3573 to 4022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
334.7 bits(726) 0.0 150/150(100%) 0/150(0%) Minus/Plus
Query      585  AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMXXXXXXXXXGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP  1034
                AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP
Subject   3573  AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP  4022

Range 18: 4077 to 4439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.1 bits(403) 0.0 108/121(89%) 0/121(0%) Minus/Plus
Query      168  NVRDVGIXXXXXXXXXXXTHSPRSVQYTYXXXXXXXXXXXXERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDDKGLLPESDIGDAPIQEGGRAVDDNTAQAAADEGHR  530
                NVRDVGI+TNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVD KGLLPES +G+AP QE GRA D NTAQ A +EG R
Subject   4077  NVRDVGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDGKGLLPESVVGEAPTQERGRAADGNTAQTAVNEGDR  4439

Range 19: 3309 to 3458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.6 bits(251) 0.0 49/50(98%) 0/50(0%) Minus/Plus
Query     1149  FWSEVSLNDFITFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG  1298
                FWSEVSLNDF TFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG
Subject   3309  FWSEVSLNDFTTFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG  3458

Range 20: 4552 to 4605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 14/18(78%) 0/18(0%) Minus/Plus
Query        2  FRAPHHMSRRNPPQVLRL  55
                FRAP   S RNPPQVLRL
Subject   4552  FRAPRQSSMRNPPQVLRL  4605

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 5225 to 5398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.4 bits(152) 0.0 24/58(41%) 0/58(0%) Minus/Plus
Query      639  VPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD  812
                +P +VW+G +   +L+ + + +SL++R L  D +PQ+  +  +EGRNVYDE L+YY+D
Subject   5225  MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD  5398

Range 2: 5018 to 5137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.1 bits(99) 0.0 21/40(52%) 0/40(0%) Minus/Plus
Query      900  RATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLM  1019
                R TV  RQVP ALL  + SY + G     +WAH LPR+LM
Subject   5018  RTTVGTRQVPSALLYSTLSYWVGGVCAGDLWAHILPRNLM  5137

Nucleotide Sequence (341 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
341

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
263.0 1244.8 25% 7.487e-70 69% NC_004667
168.6 336.3 40% 1.94e-41 39% NC_022072
106.9 155.6 53% 7.417e-23 43% NC_029783
83.3 83.3 30% 9.447e-16 40% NC_005065
81.0 198.1 42% 1.783e-26 48% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 6396 to 6734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.0 bits(573) 0.0 112/113(99%) 0/113(0%) Plus/Plus
Query        1  LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT  339
                LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTF DVVLFRTKKADDSLFTKQPHILVGLSRHT
Subject   6396  LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHT  6734

Range 2: 6396 to 6734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 93/113(82%) 0/113(0%) Minus/Minus
Query        1  CMS*QTNKYMRLFSEQ*VICLLCPEQHHITECFSLCFMYCHHWCFFPFSLQRPLHIRLLQLGHAQIHVSVYFSHVISSSNWPFGQ*SHYRLILTTNDLFRVTLFRSPYGH*GQ  339
                C+S QTNKYMRLFSE  VI  L P+Q+HITECFSLCFM+CHHWCFF FSLQRPLHIRLLQLGHAQ+HVSVYFS+VIS SNWPFGQ S+Y  +LT NDLFRVTLFRSPYGH*GQ
Subject   6396  CVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQ  6734

Range 3: 6494 to 6736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 78/81(96%) 0/81(0%) Minus/Minus
Query       99  RVCLDRPTSICGCLVNNESSAFFVLNNTTSPNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  341
                RVCLD+PTSICGCLVN ESSAFFVLNNTTS NVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI
Subject   6494  RVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  6736

Range 4: 6398 to 6442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 15/15(100%) 0/15(0%) Minus/Minus
Query        3  FSG*HFSVPLTVIED  47
                FSG*HFSVPLTVIED
Subject   6398  FSG*HFSVPLTVIED  6442

Range 5: 6397 to 6558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 46/54(85%) 0/54(0%) Plus/Plus
Query        2  CPQ*P*GERKSVTLKRSLVVRISR**DHCPKGQLELLMTWLK*TLTCICA*PSW  163
                CPQ*P*GERKSVTLKRSL VR ++**D CPKGQLE LMT LK*TLTC CA*PSW
Subject   6397  CPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQLEPLMT*LK*TLTCTCA*PSW  6558

Range 6: 6589 to 6735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 38/49(78%) 0/49(0%) Plus/Plus
Query      194  EKGKKHQ**QYMKHREKHSVMWCCSGQRRQMTHCSLNNRIYLLVCQDIH  340
                EK KKHQ**Q MKHREKHSVMW C G+R+ MT  SLNNRIYLLVC+D H
Subject   6589  EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTH  6735

Range 7: 6398 to 6736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 92/113(81%) 0/113(0%) Plus/Plus
Query        3  VLNDRKGNGKVLP*KGR*W*G*AGSEITVQKANWNY**RG*NKR*RVFVHDPXXXXXXXXXXXXKRERNTSDDST*STGKNIR*CGVVQDKEGR*LIVH*TTAYTCWSVKTYT  341
                VLNDRKGNGKVLP*KGR* *G   S+I VQKANWN+**R *NKR*RV VHDPVGEVGYEEVVEGKR+RNTSDDS *STGKNI+*CG+V D+E R*L +H*TTAYTCW V+T+T
Subject   6398  VLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHT  6736

Range 8: 6397 to 6552 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 43/52(83%) 0/52(0%) Minus/Minus
Query        2  GSCTNTRQRLFQPRHQ*FQLAFWTVISLPAYPYH*RPFQGNTFPFPLRSLRT  157
                GSCT+TRQRLFQ RHQ FQLAFWT I L   PY *RPFQGNTFPFPLRSLRT
Subject   6397  GSCTSTRQRLFQLRHQWFQLAFWTAILLLVCPYR*RPFQGNTFPFPLRSLRT  6552

Range 9: 6640 to 6735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 22/32(69%) 0/32(0%) Minus/Minus
Query      245  VYVLTDQQVYAVV**TMSHLPSLS*TTPHHRM  340
                V V T+QQVYAVV**  SH  S S*T PHH M
Subject   6640  VCVSTNQQVYAVV**IGSHRLSSS*TIPHH*M  6735

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 4

Range 1: 7460 to 7798 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.6 bits(365) 0.0 74/113(65%) 0/113(0%) Plus/Plus
Query        1  LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT  339
                LS++     EKCY   VVSG   PVVRS  KRPIG+  DVA+I ADVYLC TQ EK +MKR L   G+  PVMTVHEAQGKTF  VVLFRTK+ADDS+F  QPH LV LSRHT
Subject   7460  LSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHT  7798

Range 2: 7558 to 7797 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 47/80(59%) 0/80(0%) Minus/Minus
Query       99  VCLDRPTSICGCLVNNESSAFFVLNNTTSPNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  338
                VCL+R T   G  +N  SSA  VLN TT   VFPCAS TVITG + P  FN  FIS FS  V HKYTSA I ATS+ +PI
Subject   7558  VCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI  7797

Range 3: 7511 to 7642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 17/44(39%) 0/44(0%) Minus/Minus
Query       52  PLHIRLLQLGHAQIHVSVYFSHVISSSNWPFGQ*SHYRLILTTN  183
                PLH+ LL+L   Q+H+S+   ++  +S+ P  +*SHYR + + N
Subject   7511  PLHLSLLRLCLTQVHISLDLRNISHTSDRPLLK*SHYRRLQSGN  7642

Range 4: 7673 to 7795 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 16/41(39%) 0/41(0%) Minus/Minus
Query      214  MS*QTNKYMRLFSEQ*VICLLCPEQHHITECFSLCFMYCHH  336
                M *+++  +RL  E  V+  L  +Q++  E FSL  M CHH
Subject   7673  MP*KSH*SVRLRVEHTVVSALSSKQNNFLESFSLRLMDCHH  7795

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 7209 to 7547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(229) 0.0 49/113(43%) 0/113(0%) Plus/Plus
Query        1  LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT  339
                LS M     + CYP  V + +D+  +RS+   PI    +    + DV+L  TQ EK+++ R      +  PV T+HEAQGKTF  V L R KKADDS+    PH LVG+SRHT
Subject   7209  LSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHT  7547

Range 2: 7343 to 7549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 31/69(45%) 0/69(0%) Minus/Minus
Query      135  RVCLDRPTSICGCLVNNESSAFFVLNNTTSPNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS  341
                RVCL+ PT   G     ESSAFF     T  NVFP AS  V TG         L  S FS  V  K TS
Subject   7343  RVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS  7549

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 5034 to 5339 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.3 bits(177) 0.0 41/102(40%) 0/102(0%) Plus/Plus
Query       34  CYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT  339
                CYP  V  G      RS+S + I +  DV   N DV++  TQ EK  +    + +  +    TVHE QGKT   V + R K A+DS+FT   H +V LSRHT
Subject   5034  CYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHT  5339

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 7076 to 7258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.0 bits(172) 0.0 32/61(52%) 0/61(0%) Plus/Plus
Query      157  QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT  339
                ++++   K  +    K   V+T HEAQGKT+GDVVL R KKADD +F+++PHI+V LSRHT
Subject   7076  EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHT  7258

Range 2: 6905 to 7087 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(120) 0.0 29/61(48%) 0/61(0%) Plus/Plus
Query        1  LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR  183
                LSSMT     K YP  V    D   +RS  K PI T +D     ADVYL MTQ EK++M+R
Subject   6905  LSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR  7087

Range 3: 7120 to 7260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 28/47(60%) 0/47(0%) Minus/Minus
Query      201  RVCLDRPTSICGCLVNNESSAFFVLNNTTSPNVFPCASCTVITGVSF  341
                RVCLD+ T+I G      SSAFF L NTTSP V PCASC V T   F
Subject   7120  RVCLDKATTI*GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLF  7260

Nucleotide Sequence (498 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
498

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
281.9 716.2 40% 2.626e-75 34% NC_004667
187.6 312.0 43% 6.82e-47 36% NC_022072
77.1 199.8 26% 1.191e-13 28% NC_016509
63.4 114.4 23% 1.637e-09 27% NC_005065
84.9 159.0 21% 5.384e-16 32% NC_029783

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 15209 to 15628 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
281.9 bits(609) 0.0 117/140(84%) 0/140(0%) Plus/Plus
Query       11  RLRRLVLSKGGSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKANSM  430
                RLRRLVLSKGGS TP+DMGNMIV+MIQLFVLYSTVKNI VKDGY+VET LG K VYLSYSEVREAILGGKY  + +N VRS+MRY+ HT ITLL+EK+IQPA TALAKHGVPKRFTPYCFDFALLDNRYYPAD+LKAN+M
Subject  15209  RLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAM  15628

Range 2: 15208 to 15627 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 91/140(65%) 0/140(0%) Minus/Minus
Query       10  IELAFSISAG*YLLSNKAKSKQ*GVNLLGTPCFAKAV*AGWIRFSTSSVIAV*V*YLM*ERTTFDDVPSYFPPNIASLTSE*LRYTGLPPRIVSTL*PSFTSMFFTVEYSTKS*IIETIIFPMSWGVIDPPFDNTNLRNL  429
                I LAF+ SAG*YLLS+ AKSKQ GVNL GTPC A+AV AG I FS S VI V*  YLM +RT       YFPPNIASLTSE*L+ T   P  VSTL PS T +FFTVE STKS I+ TIIFP+S GV  PPF+ T+LR+L
Subject  15208  IALAFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSL  15627

Range 3: 15257 to 15649 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 47/131(36%) 0/131(0%) Minus/Minus
Query       59  FDGLGTRH*IGLQYIRWVIPII*QSEIEAVRSKSFRHSVLR*GRVGWLDSFLY**CDRRMSIVSHVGTHYIRRCTIVLSSQYRLSNLRIA*IYRFTAEDCFHFVTILYVYVLHRRI*HEKLNHRDYHIPHV  451
                F+     H + LQ++R VI +I   E+EAVRS+  R +VL *G   WL+  LY * +  +S + H G+H +     V  S Y     RI *+         H + +   Y+L+ R+ +EKL H  YHIPH+
Subject  15257  FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHI  15649

Range 4: 15232 to 15558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 37/109(34%) 0/109(0%) Plus/Plus
Query       34  ERGIDYAPRHGEYDSLYDSTFRAIFYGEEHRRKGWLQSGNNPRR*TCISKLF*G*RGDIGRKVRWYIVECSAFLHEILYSYGDHTTSRETNPTSLHGLSEARSA*KIYS  360
                ER      R+GEYDS +D+TFR + Y +E++R+  +  G+  R    + KLF      I R++R    +  A LHE+  S+  ++T RE N  S++  S AR   +++S
Subject  15232  ERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHS  15558

Range 5: 15228 to 15629 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 46/134(34%) 0/134(0%) Plus/Plus
Query       30  YRKGDRLRPKTWGI**SL*FNFSCYILR*RT*T*RMVTKWKQSSAVNLYI*AILRLERRYWEESTMVHRRM*CVPT*DTILIRRSHY**RNESNQPTRP*RSTECLKDLLLTASISLC*IIGITQRIY*RPIQW  431
                +RK      + WGI**  *+NFS   L *R *  +    W+ +       * I +  + Y E +T+  +   C P+*  +L     Y *R + +Q   P* ST   +  L TAS S   I  IT+R  *R  QW
Subject  15228  FRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQW  15629

Range 6: 13935 to 14069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/45(40%) 0/45(0%) Plus/Plus
Query      239  NVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFD  373
                N VR Y+ Y+T T IT  +  ++      +A+HGVP +F PY  D
Subject  13935  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  14069

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 16108 to 16527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.6 bits(403) 0.0 77/140(55%) 0/140(0%) Plus/Plus
Query       11  RLRRLVLSKGGSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKANSM  430
                RL  L+ S G   +  D GN +V +IQLF+LYSTVK+  +   YK+   L GK V LS+  VR AIL G  D +S+N VR+YMRYY +TA++LL+  ++QPAYTA AKHGVPKRF P+CFDFA+LD+RYY  D++KAN++
Subject  16108  RLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANAL  16527

Range 2: 16155 to 16520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 55/122(45%) 0/122(0%) Minus/Minus
Query       58  LAFSISAG*YLLSNKAKSKQ*GVNLLGTPCFAKAV*AGWIRFSTSSVIAV*V*YLM*ERTTFDDVPSYFPPNIASLTSE*LRYTGLPPRIVSTL*PSFTSMFFTVEYSTKS*IIETIIFPMS  423
                LAF  S  *YLLS  AKSKQ G NL GTPC A AV*AG     +  + AV  *YL+  RT      S  P +IA LT+  L+ T  P  ++  L    +    TV YS KS I  T  FP+S
Subject  16155  LAFITSCV*YLLSRIAKSKQNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFPLS  16520

Range 3: 14853 to 14987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 16/45(36%) 0/45(0%) Plus/Plus
Query      239  NVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFD  373
                N VR Y+ ++T T +T ++  ++ P    +A+HGVP +F  Y  D
Subject  14853  NPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLD  14987

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 15096 to 15434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 36/113(32%) 0/113(0%) Plus/Plus
Query       71  MIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPAD  409
                + + MIQ  + +ST  N+   +  KV+  L G+   + ++E+R  I          N VR YMR+++ T I+L+    + P Y  +A+HGV  +F PY FD+ +L   Y   D
Subject  15096  LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCILLPSYNRRD  15434

Range 2: 13685 to 13927 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 28/81(35%) 0/81(0%) Plus/Plus
Query      179  LSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKA  421
                L+Y +V+ A++ G    T  N +R Y R ++ TA+ L++  +++P      +HGVPKRF PY FDF       +  D ++A
Subject  13685  LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRA  13927

Range 3: 16440 to 16829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 37/130(28%) 0/130(0%) Plus/Plus
Query        8  MRLRRLVLSKGGSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  397
                + L RL L+        D   ++V +IQ  V Y T  +   K    V     GK V L +  VR  I+        +N +R YMR+++   I L+    ++P     AK G+        FD+ LLD R+
Subject  16440  LALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF  16829

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 8772 to 9014 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/81(32%) 0/81(0%) Plus/Plus
Query      182  SYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKAN  424
                +Y+EV   I     +    N VR+++R+ +   I L++   I+P    +AK+G+P++F PYCFDF++++   +  D + AN
Subject   8772  NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVNTVTHGVDAVFAN  9014

Range 2: 13620 to 13967 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 31/116(27%) 0/116(0%) Plus/Plus
Query       41  GSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLD  388
                GS   + +   +V + Q+ V+  T  N    D       + GK    +Y  VRE+I          N +R +MR  + + +  L    I+P    ++K GVP  F PY  D  + D
Subject  13620  GSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPD  13967

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 15317 to 15652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 40/112(36%) 0/112(0%) Plus/Plus
Query       74  IVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPAD  409
                ++++IQ  V YSTV++  + D   V     G+     Y++  + I   +     SN +R YMR+++ T I+L+    I+P Y   A HGV K + PYCFDF  LD+RY   D
Subject  15317  LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKD  15652

Range 2: 14031 to 14213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 22/61(36%) 0/61(0%) Plus/Plus
Query      239  NVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKA  421
                N VR Y R ++ + I+     +I+P    LA+HGV KRF  YC D       YY    ++A
Subject  14031  NPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRA  14213

Range 3: 13869 to 13970 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 11/34(32%) 0/34(0%) Plus/Plus
Query       74  IVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPV  175
                +++  Q+ V YST +  ++K+ Y      G KPV
Subject  13869  VLACFQVVVTYSTSEETELKEQYGAVIGYGDKPV  13970

Nucleotide Sequence (324 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
324

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
198.6 1081.7 39% 1.726e-50 76% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 3364 to 3684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.6 bits(427) 0.0 88/107(82%) 0/107(0%) Plus/Plus
Query        1  CLLGFLWRLWVRPLLHGSTGAELRLTPEDMRAVVTKL*AH*VLKPLVVYAV*PLAQYPAGHLLCEEGFRRLWPSPGRP*LNVKSP*RCYRFLPHTPFPAAVC*AFGH  321
                CL G+ WRLWVRP LHGS GAELRLT E  RAVVTKL*A *V KP VVYAV*PLAQYP     CEEGFRR  PS GRP*LNVKSP*RCYRFLPHTPFPAAVC*AFGH
Subject   3364  CLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGFRRR*PSLGRP*LNVKSP*RCYRFLPHTPFPAAVC*AFGH  3684

Range 2: 3366 to 3686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 85/107(79%) 0/107(0%) Minus/Minus
Query        3  VCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPGDGHSRRKPSSHNK*PAGYCASGYTA*TTSGLRTQ*A*SFVTTARISSGVSRNSAPVLPCNRGRTQRRHKNPNK  323
                +CPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRP DGH RRKPSSH+    GYCA G TA*TT GL T  A*SFVTTAR+ S VSRNSAP+LPCN GRTQRRH+ P+K
Subject   3366  MCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDK  3686

Range 3: 3365 to 3685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 81/107(76%) 0/107(0%) Plus/Plus
Query        2  AYWDFCGVFGCGPCCMEVQARNCGLRQKICGQ*LRNSKLIEFSSRWWFTRYNR*HSIRRVICCAKRVFVGCGRHQGDRS*TSSPLSAVIVFYLIRHFRLQYARHLGT  322
                AY D  GVFGCGP CMEV ARNCG R K+ GQ*LRNSKL++F+SR WFTR+N *HSIR +   AKRVFVG  RH GDRS*TSSPLS  IVFYLIRHFRLQY RHLGT
Subject   3365  AYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGT  3685

Range 4: 3364 to 3684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 82/107(77%) 0/107(0%) Minus/Minus
Query        1  VPKCLAYCSRKWRMR*KTITALRGLDV*LRSPW*RPQPTKTLFAQQMTRRILC*RLYRVNHQRLENSMSLEFRNYCPHIFWRKPQFRACTSMQQGPHPKTPQKSQ*A  321
                VPKCL YCSRKWRMR*KTI  LRGLDV*LRSP *R  PTKTLFA+    RILC*RL RVNH+RL N  SLEFRNYCP  F R PQFRA TSMQ GPHPKTP+ S+*A
Subject   3364  VPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC*RLNRVNHRRLVNLTSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*A  3684

Range 5: 3365 to 3571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 62/69(90%) 0/69(0%) Minus/Minus
Query        2  DENPLRTTNDPPDTVLAVIPRKPPAA*ELNELRVSXXXXXXXXXXXAIPRLYFHATGAAPKDATKIPIS  208
                DENPLRTT DPPDTVL V PRKPPAA ELNELRVS*LLPAYLLA AAIPRLYFHA GAAPKDAT IPIS
Subject   3365  DENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPIS  3571

Range 6: 3614 to 3685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 21/24(88%) 0/24(0%) Minus/Minus
Query      251  CAQMPSILQPEMAYEVENDNSAKG  322
                CAQMP+ILQPEMAYEVEND++AKG
Subject   3614  CAQMPNILQPEMAYEVENDSNAKG  3685

Range 7: 3492 to 3686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 61/65(94%) 0/65(0%) Plus/Plus
Query      129  QAAGGLRGITASTVSGGSFVVRRGFSSXXXXXXXXXXXXXXPLALLSFSTSYAISGCSMLGIWAH  323
                QAAGGLRG+T+STVSGGS VVRRGFSSAV VTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAH
Subject   3492  QAAGGLRGLTSSTVSGGSLVVRRGFSSAVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAH  3686

Range 8: 3366 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 16/17(94%) 0/17(0%) Plus/Plus
Query        3  LIGIFVASLGAAPVAWK  53
                LIGIFVASLGAAP+AWK
Subject   3366  LIGIFVASLGAAPIAWK  3416

Nucleotide Sequence (566 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
566

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
391.0 2225.7 28% 4.671e-108 81% NC_004667
108.7 108.7 28% 4.336e-23 34% NC_022072
51.0 51.0 12% 1.039e-05 37% NC_016417
50.1 50.1 12% 1.962e-05 36% NC_016081
48.7 48.7 12% 5.087e-05 36% NC_016416

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 7

Range 1: 12661 to 13155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
391.0 bits(847) 0.0 163/165(99%) 0/165(0%) Plus/Plus
Query        1  EMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQATG  495
                EMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKG+VEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQ TG
Subject  12661  EMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQVTG  13155

Range 2: 12663 to 13169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
380.0 bits(823) 0.0 163/169(96%) 0/169(0%) Plus/Plus
Query        3  DDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRYVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPGDRTTKHT  509
                DDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRR VSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPG R    T
Subject  12663  DDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPGYRNYSTT  13169

Range 3: 12661 to 13155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
379.5 bits(822) 0.0 162/165(98%) 0/165(0%) Minus/Minus
Query        1  SGRLVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*RTVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDFSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHL  495
                SG LVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*R VYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLD SLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHL
Subject  12661  SGNLVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHL  13155

Range 4: 12662 to 13153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
379.1 bits(821) 0.0 162/164(99%) 0/164(0%) Minus/Minus
Query        2  RSPGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTYRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSS  493
                R PGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLT RLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSS
Subject  12662  R*PGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSS  13153

Range 5: 12663 to 13154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
355.3 bits(769) 0.0 162/164(99%) 0/164(0%) Minus/Minus
Query        3  PVAWFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTFPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVI  494
                PV WFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFST PFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVI
Subject  12663  PVTWFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVI  13154

Range 6: 12662 to 13054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 129/131(98%) 0/131(0%) Plus/Plus
Query        2  R*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REKSRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TVR*RMT  394
                R*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*RE+SRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*T R*RMT
Subject  12662  R*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REESRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TGR*RMT  13054

Range 7: 13091 to 13168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 21/26(81%) 0/26(0%) Plus/Plus
Query      431  STPQITLALYTISRRTKTRRPDHQTH  508
                STPQITLALYTISRRTKTR P+   H
Subject  13091  STPQITLALYTISRRTKTRLPELLYH  13168

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 13631 to 14110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 54/160(34%) 0/160(0%) Plus/Plus
Query       16  KGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQATG  495
                K   + PE+    +  +++EN  +      A  II++YYSIYGTNA RI RRP  L V ++ +   + L  VE       +   IN  R L R Y+ LT   R  + I RNNW+TL  +DG +A+DT + +   +       D+   + +IK+NE +  G
Subject  13631  KQSSVVPELMMSAIDAVLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNEKRVEG  14110

Grapevine leafroll-associated virus 6, complete genome

Sequence ID: Length: 13807 Number of Matches: 1

Range 1: 11578 to 11778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 25/67(37%) 0/67(0%) Plus/Plus
Query       37  EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED  237
                E+  KLV  L+ +N  L +T   A++++L  Y  Y TNA R    P  L+  IK +V+KV   GV++
Subject  11578  ELTRKLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE  11778

Grapevine leafroll-associated virus 5, complete genome

Sequence ID: Length: 13384 Number of Matches: 1

Range 1: 11141 to 11341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 24/67(36%) 0/67(0%) Plus/Plus
Query       37  EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED  237
                E+  KLV  L+  N  + +T   A++I+L  Y  Y TNA R    P  L+  IK +V++V   GV++
Subject  11141  ELTRKLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE  11341

Grapevine leafroll-associated virus 4, complete genome

Sequence ID: Length: 13830 Number of Matches: 1

Range 1: 11588 to 11788 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 24/67(36%) 0/67(0%) Plus/Plus
Query       37  EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED  237
                E+  KLV  L+ +N  L ++   A++++L  Y  Y TNA R    P  L+  IKG V  V   GV++
Subject  11588  ELTRKLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN  11788

Nucleotide Sequence (1025 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
103
206
309
412
515
618
721
824
927
1025

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
471.2 3996.3 51% 0 69% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 23

Range 1: 16998 to 17612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
471.2 bits(1022) 0.0 199/205(97%) 0/205(0%) Minus/Minus
Query        3  FSTYAN*SI*IVTNKHTD*RYAYKYIPPITNVTSHDAIVYRYSDGFL*VPHRLLQQQTISTANKHAQISSDNCNPFENLTLAEQHNNFIVLRNKASRATS*RSRNLKRTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA  617
                FSTYAN*SI*IVTNKHTD*RYAYKYIPP+TNVTSHDAIVYRYSDGF *VPHRLLQ+ TISTANKHAQISSDNCNPFENLTLAEQHN FIVLRNKASRATS*RSRNL+RTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA
Subject  16998  FSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA  17612

Range 2: 17635 to 17919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 89/95(94%) 0/95(0%) Minus/Minus
Query      641  DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVEFSHLTSKYNLFYKNEKRTKRLA*LFHFSYFCLFQIY*RVFTY  925
                DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREV+FSHLTSK NLFYK+E+RTKRLA*LFHFSYFCLFQIY*R+FT+
Subject  17635  DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTH  17919

Range 3: 16997 to 17614 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
458.8 bits(995) 0.0 197/206(96%) 0/206(0%) Plus/Plus
Query        2  LHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSSNFGIARMLLLTLCCGAL*NCYVVQPVSNFQTGYNYRYLFAHVC*RC*LFVVVEGDEALRETHQSSDTLLRRAK*RL*WVGCIYRRNVNRYVY*LLFICSN*HM*KR  619
                LHRTILIDSIDSAFAYDQVGCLVGIARGLL+HSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFS NFGIARMLLLTLCCGAL* CYVVQPVSNFQTGYNYRYLFAHVC*RC*L   VEGDEALR+THQSS TLLRRAK*RL* VGCIYRRNVNRYVY*LLFICSN*HM*KR
Subject  16997  LHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAHVC*RC*LLAFVEGDEALRKTHQSSGTLLRRAK*RL*RVGCIYRRNVNRYVY*LLFICSN*HM*KR  17614

Range 4: 17609 to 17917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 92/103(89%) 0/103(0%) Plus/Plus
Query      615  KGGRSVNY**VKTLQ*I*NKQK*EK*NN*ASLFVRFSFL*NRLYFEVR*LNSTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR  923
                K  R  N * VK LQ*I*NKQK*EK*NN*ASLFVR S L*NR YFEVR*LN TSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR
Subject  17609  KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR  17917

Range 5: 16997 to 17614 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
419.0 bits(908) 0.0 199/206(97%) 0/206(0%) Minus/Minus
Query        2  PFLHMLIRAYK**LXXXXXXXXXXXTSHPSQTSLRTTQ*CIATLMGFSKCLIAFYNNKQLAPLTNMRK*VAIIVTRLKI*HWLNNITIL*CSATKRQEQHPSDPEI*RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMFKQTSSYAHQTPHLVISEGGVYTVNENCSMQ  619
                PFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*C ATLMGFSKCLIAFY + QLAPLTNMRK*VAIIVTRLKI*HWLNNIT L*CSATKRQEQHPSDPEI RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRM KQTSSYAHQTPHLVISEGGVYTVNENCSMQ
Subject  16997  PFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQ  17614

Range 6: 17616 to 17918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.8 bits(432) 0.0 92/101(91%) 0/101(0%) Minus/Minus
Query      622  T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNITYSTKTKNEQKD*PNYFIFLTFVYFKFIEESLPINNSQTF  924
                T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRN TYSTK K+EQKD*PNYFIFLTFVYFKFIE  LPI    TF
Subject  17616  T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TF  17918

Range 7: 17325 to 17615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
224.7 bits(484) 0.0 94/97(97%) 0/97(0%) Plus/Plus
Query      330  *RFVAEHYKIVMLFSQCQIFKRVTIIATYLRMFVSGANCLLL*KAMRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKG  620
                *RFVAEHYK VMLFSQCQIFKRVTIIATYLRMFVSGANC LL*KAMRHLEKPIRVA+HYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKG
Subject  17325  *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKG  17615

Range 8: 16998 to 17264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.3 bits(468) 0.0 88/89(99%) 0/89(0%) Plus/Plus
Query        3  CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLNIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER  269
                CIEQFSLTV*TPPSLMTKWGVWWA*LEVCL+IRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER
Subject  16998  CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER  17264

Range 9: 17595 to 17918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.8 bits(373) 0.0 96/108(89%) 0/108(0%) Plus/Plus
Query      601  LAYVEKGEGL*IINR*RLFNKFEINKSKKNEXXXXXXXXXXXXCRIGYISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG  924
                ++   KGEGL   N *+ FNKFEINKSKKNEIIRLVFLFVFRFCRIG+ISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG
Subject  17595  ISICRKGEGLTTSNG*KSFNKFEINKSKKNEIIRLVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG  17918

Range 10: 16996 to 17217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.0 bits(369) 0.0 74/74(100%) 0/74(0%) Plus/Plus
Query        1  AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN  222
                AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN
Subject  16996  AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN  17217

Range 11: 17743 to 17919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 59/59(100%) 0/59(0%) Plus/Plus
Query      749  RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V  925
                RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V
Subject  17743  RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V  17919

Range 12: 17464 to 17613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 48/50(96%) 0/50(0%) Plus/Plus
Query      469  GT*RNPSE*RYTIASCEVTFVMGGMYL*A*R*SVCLLVTIYML*LAYVEK  618
                GT*+NPSE*RYTIASCEVTFV GGMYL*A*R*SVCLLVTIYML*LAYVEK
Subject  17464  GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEK  17613

Range 13: 17260 to 17403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 46/48(96%) 0/48(0%) Plus/Plus
Query      265  NESSSQW**VLFKFRDR*DVALDALLRSTIKLLCCSASVKFSNGLQLS  408
                NESSSQW**VL KFRDR*DVALDALLRSTIK+LCCSASVKFSNGLQLS
Subject  17260  NESSSQW**VLSKFRDR*DVALDALLRSTIKMLCCSASVKFSNGLQLS  17403

Range 14: 17608 to 17703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 22/32(69%) 0/32(0%) Plus/Plus
Query      614  KRGKVCELLIGKDSSINLK*TKVRKMK*LG*S  709
                ++ KV + ++GK+ SINLK*TKVRKMK*LG*S
Subject  17608  EKEKV*QPVMGKNPSINLK*TKVRKMK*LG*S  17703

Range 15: 17699 to 17917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 71/73(97%) 0/73(0%) Minus/Minus
Query      705  PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GRV*SSYLEI*PILQKRKTNKKT  923
                PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*G+V*SSYLEI PILQKRKTNKKT
Subject  17699  PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKT  17917

Range 16: 16996 to 17217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 74/74(100%) 0/74(0%) Minus/Minus
Query        1  VSIMYLLVH*SXXXXXXXXXXXXXRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS  222
                VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS
Subject  16996  VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS  17217

Range 17: 17257 to 17436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 58/60(97%) 0/60(0%) Minus/Minus
Query      262  *HR*QTCANK*R*L*PV*KFDTG*TT*QFYSAPQQSVKSNILAIPKFEENLLPLTR*FVR  441
                *HR*QTCANK*R*L*PV*KFDTG*TT* FYSAPQQSVKSNILAIPKF ENLLPLTR*FVR
Subject  17257  *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*FVR  17436

Range 18: 17503 to 17613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 36/37(97%) 0/37(0%) Minus/Minus
Query      508  LFYIC*LEHINSN**TYRLTLRL*IHPTHHKRHFARR  618
                LFYIC*LEHINSN**TYRLTLRL*IHPT HKRHFARR
Subject  17503  LFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARR  17613

Range 19: 9556 to 9654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 31/33(94%) 0/33(0%) Minus/Plus
Query      927  YYVGYFGATPKVFPLCV*PLM*VSLFYFCLLGG  1025
                YYVGYFGATP+VFPLCV*PLM*VSLFYFCL GG
Subject   9556  YYVGYFGATPEVFPLCV*PLM*VSLFYFCLSGG  9654

Range 20: 9558 to 9653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 30/32(94%) 0/32(0%) Minus/Plus
Query      928  LRRLFWRYAKGFSSLCVAFNVGFFVLFLPFRR  1023
                LRRL WRYA+GFSSLCVAFNVGFFVLFLPFRR
Subject   9558  LRRLLWRYARGFSSLCVAFNVGFFVLFLPFRR  9653

Range 21: 9556 to 9660 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 32/35(91%) 0/35(0%) Plus/Minus
Query      921  RSAA*KAKIKQRNLH*RLHTKRKNLWRSAKITYVI  1025
                + AA*KAKIKQRNLH*RLHTKRKNLWRSAK+TYVI
Subject   9556  KRAA*KAKIKQRNLH*RLHTKRKNLWRSAKVTYVI  9660

Range 22: 9558 to 9665 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 31/36(86%) 0/36(0%) Plus/Minus
Query      916  KLGQPPKRQK*NKETYIKGYTQRGKTFGVAPK*PT*  1023
                K   PP+RQK*NKETYIKGYTQRGKT GVAPK*PT*
Subject   9558  KRNAPPERQK*NKETYIKGYTQRGKTSGVAPK*PT*  9665

Range 23: 9557 to 9655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 31/33(94%) 0/33(0%) Minus/Plus
Query      926  IT*VILALRQRFFLFVCSL*CRFLCFIFAF*AA  1024
                IT*V LALRQRFFLFVCSL*CRFLCFIFAF AA
Subject   9557  IT*VTLALRQRFFLFVCSL*CRFLCFIFAFQAA  9655

Nucleotide Sequence (355 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
355

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
264.1 1452.0 34% 3.851e-70 90% NC_004667
127.9 127.9 33% 3.658e-29 45% NC_022072
95.1 95.1 28% 2.865e-19 38% NC_016509
70.0 70.0 18% 1.035e-11 40% NC_029783
51.2 78.8 24% 7.771e-09 35% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 11209 to 11562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
264.1 bits(570) 0.0 106/118(90%) 0/118(0%) Minus/Plus
Query        1  WTL*RIR*RTGWWIFSRW*FSRRVVQYPVHILIDAQWVVGMWYSVYLKGRITGLF*MNRRAGAYRNVGETQWRPTWRSLISPRTDRCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE  354
                WTL*RIR*RT  W+FSRW*FSR+VVQYPVHILID QWVV MWY+VYLKGRIT LF*M+RR+GAYRNVGETQ RPTWRSLISPRT+RCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE
Subject  11209  WTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE  11562

Range 2: 11208 to 11561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.9 bits(563) 0.0 107/118(91%) 0/118(0%) Plus/Minus
Query        2  SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLHWVSPTFRYAPARRFI*KSPVILPFKYTEYHIPTTHCASMSI*TGYWTTLRENYHRLKIHHPVR*RIR*SVH  355
                SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGL+WVSPTFRYAP RR I*KS VILPFKYT YHI TTHC SMSI*TGYWTT RENYHRLK H+ VR*RIR*SVH
Subject  11208  SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVH  11561

Range 3: 11208 to 11561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.4 bits(562) 0.0 109/118(92%) 0/118(0%) Minus/Plus
Query        2  VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVSKRRGDPVEADVAQFNLSTDGSVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR  355
                VDTL NTLTD VV  QPVVIFPKGSPIPCSYTHR TVGGGDVV+GIFEGENNRAFLNEPT RGVSKRRGDPVE DVAQFNLSTDG+VSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR
Subject  11208  VDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR  11561

Range 4: 11209 to 11562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.5 bits(525) 0.0 109/118(92%) 0/118(0%) Plus/Minus
Query        1  LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPIRPWRD*TAPRRPPLGLPYVSIRPGTSVHLEKPCYSPLQIYRIPHPHHPLCIYEYMNRVLDYPSGKLXXXXXXXXXXLAYSLKCP  354
                LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTP RPWRD*TAPRR  LGLPYVSIRPGTS HLEK CYSPLQIYRIPH HHPLCIYEYMNRVLDY SGKLPPAE+P PRPLAYSLKCP
Subject  11209  LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCP  11562

Range 5: 11210 to 11560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.8 bits(458) 0.0 106/117(91%) 0/117(0%) Minus/Plus
Query        3  GHFSEYXXXXXXXXXXXXXFPEG*SNTLFIYS*MHSGWWGCGIRYI*RGE*QGFSK*TDVPGRIET*GRPSGGRRGAV*SLHGRIGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE  353
                GHF+EYANGRG G SAGGNFPE *SNTLFIYS*+HSGWW CGIRYI*RGE*Q FSK* DVPGRIET*GRPS  RRGAV*SLHGR GVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE
Subject  11210  GHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE  11560

Range 6: 11210 to 11560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(455) 0.0 108/117(92%) 0/117(0%) Plus/Minus
Query        3  LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTDPSVERLNCATSASTGSPLRFDTPRHVGSFRKALLFXXXXXXXXXXXXXXVHL*VYEQGIGLPFGKITTG*KSTTPSVSVFAKVS  353
                LPDL*TNESSTFVVPGTRYSFFTSSPLTITDT PSVERLNCATS STGSPLRFDTPR+VGSFRKALLFSPSNIP TTSPPPTV+L*VYEQGIGLPFGKITTG*+ TT SVSVF KVS
Subject  11210  LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKITTG*RPTTSSVSVFVKVS  11560

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 12176 to 12529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.9 bits(274) 0.0 53/118(45%) 0/118(0%) Minus/Plus
Query        2  VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVSKRRGDPVEADVAQFNLSTDGSVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR  355
                VDTL N+L+D VV+F+P ++FPKG+PIPCSYT   +V   +VV+G++EGE NR++LNE T R   +        D  +++LS DG++SV +NG+   NE+     +NV+ S  Y +GR
Subject  12176  VDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGR  12529

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 10993 to 11295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.1 bits(202) 0.0 38/101(38%) 0/101(0%) Minus/Plus
Query       53  VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVSKRRGDPVEADVAQFNLSTDGSVSVIVNGEEVKNEYL  355
                +DT++ TL+D +  F  +VIFPKG PIP  Y     + G  + +GI EGE+NR +LNE   +G   R  +  ++D  ++ +S DG + + V+G ++KN  L
Subject  10993  IDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL  11295

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 11408 to 11602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.0 bits(147) 0.0 26/65(40%) 0/65(0%) Minus/Plus
Query      161  VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVS  355
                +D+L+ TL+D +  F+  ++FPKG+ IP ++    TVG  +V +G++EGE N  +LN+ T +GV+
Subject  11408  IDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA  11602

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 10447 to 10626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.2 bits(106) 0.0 21/60(35%) 0/60(0%) Minus/Plus
Query      176  VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPT  355
                VDTL++ + D +V  +  V+  KG  +P +        GG++   ++EGE+  AF+NEPT
Subject  10447  VDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPT  10626

Range 2: 10681 to 10752 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.5 bits(54) 0.0 11/24(46%) 0/24(0%) Minus/Plus
Query       44  LSTDGSVSVIVNGEEVKNEYLVPG  115
                L  DGS+ V V G+++KN++L  G
Subject  10681  LRRDGSLVVSVFGKQIKNKFLPKG  10752

Nucleotide Sequence (435 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
435

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
245.3 1354.8 44% 2.379e-64 83% NC_004667
48.3 48.3 8% 4.828e-05 47% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 16164 to 16562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.3 bits(529) 0.0 115/133(86%) 0/133(0%) Minus/Plus
Query        6  CGILNDLKWEESNKEKFKGRDILDTYILSSDYPGFK*GYFRSAILS*GCQSRLKRTITWF*YL*RKRL*TITTPLLPMRVPY*ATFAKV*GIFS*PGVVRKTPAVS*RP*SLI*SVR*R*KQLEALSET*YSS  404
                CGILNDLKWEESNKEKFKGRDILDTY+LSSDYPGFK*  FRSAILS*GCQSRL+RTITWF*YL*R+RL*TITTPL PMRVPY* T AKV* IFS*PG VRK PA S*R *SL  SVR R*KQ E LSET*YSS
Subject  16164  CGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*YL*RRRL*TITTPLSPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSS  16562

Range 2: 16168 to 16560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.3 bits(516) 0.0 109/131(83%) 0/131(0%) Minus/Plus
Query        8  GY*MI*SGKRATRKNLRGETY*IPTSYRLITQGLNEVTFAPLSYLEVVKVA*NERSPGFDTYKGSAYKLLQRLFYR*ECRTKRLSRKYREFSHSQV*FAKLLPCHEGLDH*YSL*GDDRNS*KLYRRLNTR  400
                GY*MI*SGKRATR+NLRGETY*I T YRLI QGLNEV FAPLSYL+VVKVA*NERS GF+TYKG AYKLLQRLF+R* CR KRLSRKYREFS SQV FAK LP HEG DH*+SL*  DRNS K YRRLNTR
Subject  16168  GY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTR  16560

Range 3: 16159 to 16344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 53/62(85%) 0/62(0%) Plus/Minus
Query      224  KTR*SFVLSDFDNLKIR*RSESNLI*TLGNQTIRCRYLICLSP*IFPCCSLPTSNHSISRTT  409
                KT+*SFVLSDFDNLKIR*RSESN I*TL NQTI+ +YL+CLSP*I PCCSLPTSNHSIS TT
Subject  16159  KTK*SFVLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISHTT  16344

Range 4: 16378 to 16560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 52/61(85%) 0/61(0%) Plus/Minus
Query        8  TSIKSPIKLLAVSIVTLQTILVIKAFMTRQEFCELHLAMRKFPILSRKSLSTALSSVKEAL  190
                TSIKSPIKLLAVSI  LQT+LVIKAFMTRQEFCE HLA RKF ILSR+SL+TA SSVKEAL
Subject  16378  TSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL  16560

Range 5: 16322 to 16561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
163.7 bits(351) 0.0 70/80(88%) 0/80(0%) Minus/Plus
Query        7  KTNDHLVLILIKEALINYYNASFTDESAVLSDFRESIGNFLIARCSSQNSCRVMKALITNIVCKVTIETARSFIGDLILV  246
                +TNDHLVLILIKEALINYYNASFTDE AVL D RESI NFL+ARC SQNSCRVMKALITN VCK++IETARSFIGDLILV
Subject  16322  RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILV  16561

Range 6: 16160 to 16273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 32/38(84%) 0/38(0%) Minus/Plus
Query      295  VVRDIE*FEVGREQQGKI*GERHIRYLHLIV*LPRV*M  408
                VV DIE*FEVGREQQG+I*GERH RYL  IV*L RV*M
Subject  16160  VVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M  16273

Range 7: 16235 to 16561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
206.3 bits(444) 0.0 90/109(83%) 0/109(0%) Plus/Minus
Query        7  DEY*VSDKASSCFYRHLTDYISDQGLHDTAGVLRTTPGYEKIPYTFAKVA*YGTLIGKRGVVIVYKRFLYKYQNQVIVRFKRL*QPQDKIAERK*PHLNPG*SDDKM*V  333
                DEY*VSDK S CFYRHLTD +SDQ LHD+AG+LRT PGYEKI YTFA+V+*YGTLIG+RGVVIVYKR LYKY NQVIVR KRL*QP DKIAERK  HLNPG*SDDK *V
Subject  16235  DEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V  16561

Range 8: 16167 to 16475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.6 bits(427) 0.0 88/103(85%) 0/103(0%) Plus/Minus
Query       93  GRSFANYTWL*ENSLYFRESRLVRHSHR*KRRCNSL*ALPL*VSKPGDRSF*ATLTTSR*DSGAKVTSFKPWVIRR*DVGI*YVSPLKFFLVALFPLQIIQYP  401
                GR+FAN TWL ENSLYFRES L+RH HR*KRRCNSL*A PL*V KP DRSF*ATLTT R*DSGAK TSFKPW+IRR*+V I*YVSPLKF LVALFPLQIIQYP
Subject  16167  GRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYP  16475

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 17055 to 17162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 17/36(47%) 0/36(0%) Minus/Plus
Query      294  GILNDLKWEESNKEKFKGRDILDTYILSSDYPGFK*  401
                G+  DL WE++     KG+D+LD  +L  +YPGFK*
Subject  17055  GLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK*  17162

Nucleotide Sequence (725 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
73
146
219
292
365
438
511
584
657
725

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
550.5 2593.7 33% 6.4e-156 76% NC_004667
233.4 304.6 42% 1.807e-60 43% NC_016509
345.2 549.4 40% 3.989e-94 27% NC_022072
181.1 181.1 27% 9.58e-45 39% NC_029783
128.4 128.4 26% 6.98e-29 33% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 11

Range 1: 2079 to 2801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
550.5 bits(1195) 0.0 231/241(96%) 0/241(0%) Plus/Plus
Query        2  KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSV  724
                KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVT RSLVP+FVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFE+ VGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFS+ VS YAKAMVHDNFNVLETL+SMP+AFI KVPGSV
Subject   2079  KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSNAVSVYAKAMVHDNFNVLETLMSMPRAFIRKVPGSV  2801

Range 2: 2079 to 2801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
462.0 bits(1002) 0.0 195/241(81%) 0/241(0%) Minus/Minus
Query        2  N*PRYFTNERFGHGYKRLQNVEIIVHHCLSVGGDYTRKTVTHGLKEELEDPGETPLTGFYKVIRANTLRPILNCLSHNGDD*TPHIIRRDIDLAVDDATPRNDMSLLRPDCPNAELECSILKRPYGVERVGIDPVDKIRIEDYRLEGHTRTSYNGYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLILKLKHVPG*SAYVRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL  724
                N PRYFT+ER GH +KRLQNVE+IVHHCLS+ GD  RKT+ +GLKEELEDPGETPLTGFYKVI ANTLRPILN LSHN D+*TPHIIRR+I+LAVD+ATP NDM LLRPD PN  L+ SIL+ PY VERVGIDPVDK+RIEDY L+GHTRTSYN Y+HQRFAHERRDQ P R+L SR*LL PTHS+MMV  TVSLIL LKHVPG SAY+RKGEKPAYVREGMFIHLTTLTNIVGQVITFPL
Subject   2079  NRPRYFTDERSGHRHKRLQNVEVIVHHCLSIDGDCVRKTIAYGLKEELEDPGETPLTGFYKVIGANTLRPILNRLSHNSDN*TPHIIRRNINLAVDNATPCNDMGLLRPDRPNGILKRSILECPYSVERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL  2801

Range 3: 2078 to 2557 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
341.5 bits(739) 0.0 151/160(94%) 0/160(0%) Minus/Minus
Query        1  KPHISSGEISTLLWTTRLPVMT*VFCDLTAPTPNSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF  480
                KPHISSGEISTLLWTTRLPVMT VFCDLTAPT  SNVLFSNVP+VLSA*E*ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL VTSVPGDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF
Subject   2078  KPHISSGEISTLLWTTRLPVMTWVFCDLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF  2557

Range 4: 2606 to 2800 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 60/65(92%) 0/65(0%) Minus/Minus
Query      529  TDPGTLQMNALGMDISVSKTLKLSCTIALA*VETTLEKQSPTV*KKSLKTPARLPSLAFIKL*ER  723
                TDPGTL+MNALG+DISVSKTLKLSCTIALA* ET  EKQSPTV*KKSLKTPARLPSLAFIKL*ER
Subject   2606  TDPGTLRMNALGIDISVSKTLKLSCTIALA*TETAFEKQSPTV*KKSLKTPARLPSLAFIKL*ER  2800

Range 5: 2078 to 2557 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
301.2 bits(651) 0.0 130/160(81%) 0/160(0%) Plus/Plus
Query        1  EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLRTHFIRERV*A*V*GIPLRLPSSYYV*GTEVTWNRGHA*VIGPDVRGQIVGVYTRCSWF*CVLQDDSPRFGFCRQDLFLRAQHHRDV*E*NIRVRRWGSQVAKDSCHYGESRRPQQGRYLSG*YVGF  480
                EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL THF+RERV*A V*GIPL LPSS+YV*G+EVTWN G+ *V+GP VRGQI GV+T CSWF*CVL D+SPRFG CRQDLFLRAQH+RD+ E*N+ V RWG QVAKD CHY ESR PQQG Y S *YVGF
Subject   2078  EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQHYRDIRE*NV*VCRWGGQVAKDPCHYRESRCPQQG*YFS**YVGF  2557

Range 6: 2609 to 2797 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 54/63(86%) 0/63(0%) Plus/Plus
Query      532  LL*LYKSQ*GESRRGLQALLSDRG*LFFECSLHLR*GNGAR*FQRFGDAYIHAQSVHL*STWV  720
                LL*LYKSQ*GESRRGLQALLSDR  LFFE SL L *GNGAR* QRFGDAY++AQSVH *STWV
Subject   2609  LL*LYKSQ*GESRRGLQALLSDRRRLFFERSLRLC*GNGAR*LQRFGDAYVYAQSVHP*STWV  2797

Range 7: 2080 to 2328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 72/83(87%) 0/83(0%) Plus/Plus
Query        3  RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLTYALHPGTCLSLSMRDTVAATIILLCVGHRSHLEPRSRVGHWSRRSWANRW  251
                RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL YAL PGTCLS SMRDTV  TII LCVG RSHLE R R+G WSRRSWANRW
Subject   2080  RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRW  2328

Range 8: 2410 to 2802 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.0 bits(369) 0.0 100/131(76%) 0/131(0%) Plus/Plus
Query      333  PTRSTP*GRLRIEHSSSALGQSGRKRLMSLRGVASSTARSISLRMICGV*SSPLWLRQLRIGRRVFALITL*KXXXXXXXXXXXXXXXPWVTVFRV*SPPTLRQWCTIISTFWRRLYPCPKRSFVKYLGQL  725
                PTRST *G  RIE  S  LG+SGRKR MSL+GVA STAR I L MICGV* S LWLR+LRIGRRVFA ITL*KPVRGVSPGSSSSSFRP   VFR  SP  LRQWCTI STFWRRL  CP+RS VKYLG L
Subject   2410  PTRSTL*GHSRIERLSMPLGRSGRKRPMSLQGVALSTARLIFLLMICGV*LSLLWLRRLRIGRRVFAPITL*KPVRGVSPGSSSSSFRP*AIVFRTQSPSMLRQWCTITSTFWRRLCLCPERSSVKYLGLL  2802

Range 9: 2200 to 2556 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.0 bits(476) 0.0 94/119(79%) 0/119(0%) Minus/Minus
Query      123  NPTYHPERYRPCCGRRDSP**HESFAT*LPQRRTRMFYSQTSLWC*ARRNRSCRQNPNRGLSS*RTH*NQLQRV*TPTICPRTSGPMTYA*PRFQVTSVPYT**DDGSRNGIPHTQA*T  479
                NPTYH E+Y+PCCG+RDS **H SFAT* PQR T+ FYS+ SL C*ARRNRSCRQ+PNRGL S*RTH*NQLQ+V*TP ICPRT+GP TY *P+FQVTS PYT**DDG+ NGIPHT A*T
Subject   2200  NPTYHQEKYQPCCGQRDSL**HGSFAT*PPQRHTQTFYSRMSL*C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T  2556

Range 10: 2686 to 2802 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 31/39(79%) 0/39(0%) Minus/Minus
Query      609  QLTQVLYK*TLWAWI*ASPKR*NYRAPLP*RRWRLHSKN  725
                Q TQVLY *TLWA  *ASPKR*+YRAPLP* R RL SKN
Subject   2686  QQTQVLYG*TLWA*T*ASPKR*SYRAPLP*HRRRLRSKN  2802

Range 11: 2080 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 20/20(100%) 0/20(0%) Minus/Minus
Query        3  NVHTSHHTDQHCRPGNHLPS  62
                NVHTSHHTDQHCRPGNHLPS
Subject   2080  NVHTSHHTDQHCRPGNHLPS  2139

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 2660 to 3379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.4 bits(503) 0.0 103/240(43%) 0/240(0%) Plus/Plus
Query        5  REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSV  724
                R+GD + Y VG  G+ Y HS   +  FF  + V+  SG+ F +EY GYR GYH  ++C    +  +    R +  TF G SLV IP +A   +SF+ + LDSDFVDR+YSY LNT   F +RTFE+ V   RSQKTHVI G+RVVH KV++SP++ WGLVVA+M QAI DR K+  +++ I+A  G+L     L  + +   F S ++ YA  M+    + L+ L+     F+  VP +V
Subject   2660  RKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHVAHHSIEALRGNLWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATV  3379

Range 2: 2884 to 3132 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 40/83(48%) 0/83(0%) Minus/Minus
Query      229  PHISSGEISTLLWTTRLPVMT*VFCDLTAPTPNSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNV  477
                PH SSG+ STL  TTR+P +T VF      T  SNVL +N  +VLS  E   STKSES+ I L +    A +GI T   P NV
Subject   2884  PHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNV  3132

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 2798 to 3511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
345.2 bits(747) 0.0 140/238(59%) 0/238(0%) Plus/Plus
Query        2  KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVP  715
                +R GD L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK    EVTRR +V +F  K++V IPV+ G+ +SFK++VLD+DFVDR+YSYALNT+  FE RTFE+ VGAVRSQKTHVITG+RVVHSKV+IS DDMWGLVVA+MAQA+KDR KS+ S++ IKAS G L     + ++ V    +S ++ Y K ++ DNF+VLE L++ PK  I +VP
Subject   2798  RRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYAVGAVRSQKTHVITGTRVVHSKVEISSDDMWGLVVAIMAQAVKDRLKSLESFSIIKASNGCLVSTINIIYRRVMKIVTSAMTGYFKGVIRDNFSVLELLVNNPKKLIVRVP  3511

Range 2: 2827 to 3276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 74/150(49%) 0/150(0%) Minus/Minus
Query       31  KPHISSGEISTLLWTTRLPVMT*VFCDLTAPTPNSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PT  480
                +PH+SS EISTL WTT +PV+T*VFCDLTAPT  SNV  S +  V  A E   STKS S T  LKD   P+ TGI T     N  T    VTS+   F     V+ W*P   PSYS+L T PD V     V+   T E  C Y SP  PT
Subject   2827  RPHMSSEEISTLEWTTLVPVIT*VFCDLTAPTAYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPT  3276

Range 3: 2930 to 3397 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 42/156(27%) 0/156(0%) Minus/Minus
Query      134  HGLKEELEDPGETPLTGFYKVIRANTLRPILNCLSHNGDD*TPHIIRRDIDLAVDDATPRNDMSLLRPDCPNAELECSILKRPYGVERVGIDPVDKIRIEDYRLEGHTRTSYNGYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLIL  601
                H   + ++   +T +   Y   R    +P+L+ LSH   +*TPH++ R++ L +D     N++S LR   P+  L+   LK  + V+ + I  + ++ ++  RL+ H R+  + Y    F  +R +  P  +L     L   +  ++VA  V+LIL
Subject   2930  HTAVDNIDRANQTTIRCLYDRERLQRFQPVLHSLSHYRHN*TPHVVGRNLHLRMDHPRTCNNVSFLRSHGPDGILKRPHLKVRHRVQGIRIHAIHEVSVKH*RLKRHVRSLQHRYHDNCFCGKR*NHHPPGNLLGSDFLTSRNR*VVVAYPVTLIL  3397

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 3198 to 3788 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.1 bits(389) 0.0 77/197(39%) 0/197(0%) Plus/Plus
Query        5  REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQ  595
                R+GD L Y+VG  G+ Y+HSF  V    T   V  S    +  EY GYRCGYHH+ M             R +  T  GK++V  P      + FK I +D++FV R+Y+YALN   TF  RTFE+ + + RSQKT++I G+RV+HSKVDI   D  G+V+A++ +A++ R  ++ +Y+ I+ S  S+     L ++
Subject   3198  RKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYAMSSFRSQKTNIIVGTRVIHSKVDIEMGDEAGVVLAILIEALRSRRGAMNAYSKIELSTVSVRQFILLLWE  3788

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 1308 to 1874 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 62/189(33%) 0/189(0%) Plus/Plus
Query       20  LAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKL  586
                + Y +G  G+ Y H    +  + T + V ++ G  + + YEG R GY +  + R+  S  T  T R    +  G     +PV        K + LD DFV+R+ SY LN       RTFE+ V  +RSQKTH+I GSR VHSKV+I    +  L   ++  +++ R  ++ +     + +GSLAG+  L
Subject   1308  VTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSYLLNVAAGVNERTFEYTVTNIRSQKTHLIVGSRTVHSKVEIDSTYLPILAAVLLTDSVRKRNLALGATKDFLSEKGSLAGMLHL  1874

Nucleotide Sequence (503 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
51
102
153
204
255
306
357
408
459
503

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
299.4 835.8 40% 1.532e-80 32% NC_004667
81.7 81.7 21% 5.059e-15 30% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 14513 to 14998 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
299.4 bits(647) 0.0 120/162(74%) 0/162(0%) Minus/Plus
Query       18  VSSSFMLVNSVGDYFECGLCHNKPYVGREVVFARKYIGGRGIEVTTGKNYTSNNWNESSYVINVTIKNGIARTVVNSSYTQTDVTGLPKDFNRIYKITKIVSVDSNLYPGCFSASKLDVMNIRSVSIQGKTIYFRDVLLKPLKKSFLALRETALGIDDSSLL  503
                VSSSFML+N VGDYFECG+CHNKPY+GREV+F RKYIGGRG+E+TTGKNYTSNNWNE+SYVI V + +G+A+T VNS+YTQTDV+GLPK++ RIYKITKIVSVD NLYPGCFS SKL VM IRS+ +    I+FRD+LLKPLKKSF A  E  L IDD+SLL
Subject  14513  VSSSFMLMNDVGDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKKSFNARIEDVLNIDDTSLL  14998

Range 2: 14515 to 14997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 97/161(60%) 0/161(0%) Plus/Minus
Query       19  NNDESSIPKAVSLKARKLFFSGFNSTSLKYIVLP*IETDLIFITSNLLAEKHPGYRFESTDTIFVILYILLKSLGSPVTSV*V*DELTTVRAIPFFIVTLITYDDSFQLFEV*FFPVVTSIPLPPIYFLANTTSLPT*GLLWHKPHSK*SPTLLTSINDDD  501
                NND SSI    S+ A   FF GFN  SLK +      +DLI IT +  +EK PG RF STDTIFVIL I ++ LG P+TSV V* ELT V A P    T ITYD SFQLF+V*F PVV S PLPP+YFL   TS P *GLL H PHSK*SPT   SINDDD
Subject  14515  NNDVSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SPTSFISINDDD  14997

Range 3: 14513 to 14881 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 52/123(42%) 0/123(0%) Plus/Minus
Query      135  PYIHHVQFTCRKTSWVQVRIN*HYFCYFVYSIKILRQSCYVGLSIR*INHGSRYPVLYSHIDYIRRLVPIV*GVILPRGDFYSSTSDIFPSKHHFSPHIRFVVA*TAFKIVAYTINEHKRR*Y  503
                PY H+ QF   +T+ V+V I  HY CYFV +  I   +  V L I  IN G   P+ Y H+ Y+RRLVPIV  V+L  GD +SS + +FP++ +F   + FVV   A +++++ +++HKRR*Y
Subject  14513  PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVISHVVHQHKRR*Y  14881

Range 4: 14515 to 14763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 37/83(45%) 0/83(0%) Minus/Plus
Query      253  IIVVYAR**CRRLF*MRFMPQQTLCGERSGVC*EIYRR*RNRSHHGEELHLKQLERVVVCNQCDYKERDSANRG*FILYSDRR  501
                IIVVYA     RL  +R + QQTL    S + *EI+R  R+  HH  ELH++QLER VV N  +     S +  *F LY++ R
Subject  14515  IIVVYADERRGRLLRVRRVSQQTLLRTGSYLL*EIHRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR  14763

Range 5: 14796 to 14996 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 27/67(40%) 0/67(0%) Minus/Plus
Query       20  TK*QK*CQLIRTCTQDVFRQVNWT**I*GPSLFKARRYTLETCY*SR*RKVS*P*GKRL*V*TTHHC  220
                TK*Q+*C  IRT T  V +  NW * +*G   F     +L   Y*+ *R  S    +  *+ TT  C
Subject  14796  TK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*RNRSTQESRMC*ILTTRRC  14996

Range 6: 14559 to 14762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 30/68(44%) 0/68(0%) Minus/Plus
Query      254  NAVYATTNLMWGEKWCLLGNISEVEE*KSPRGRITPQTIGTSRRM*SM*L*RTG*REPWLIHLILRPT  457
                +A   TTN     K   +GN    EE +SP  R T +TIGT RR *  * *  G*  P LI LI + T
Subject  14559  SAACVTTNPT*DGKLSSVGNT*VGEEWRSPLVRTTRRTIGTRRRT*YK*T*SMG*HRPLLILLIRKRT  14762

Range 7: 14794 to 15000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 22/69(32%) 0/69(0%) Minus/Plus
Query       16  IQNNKNSVS*FEPVPRMFFGK*IGRDEYKVRLYSRQDDIL*RRAIKAAEEKFPSLKGNGFRYRRLIIVA  222
                +QNNK+SV   EP+P +F     G + YKV +      +L*   I+  EE           Y R ++V+
Subject  14794  LQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIETFEEIVQRKNRGCAEY*RHVVVS  15000

Range 8: 14796 to 14882 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 14/29(48%) 0/29(0%) Plus/Minus
Query      134  TLYSSRPIYLPKNILGTGSNQLTLFLLFC  220
                TLY+  P+   +N  G GS+  TL LLFC
Subject  14796  TLYALHPVSSLRNNQGRGSDLRTLSLLFC  14882

Range 9: 14514 to 14675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 20/54(37%) 0/54(0%) Plus/Minus
Query      341  NCLRCNSSPW*LLFLYLRYIS*QTPLLSPHKVCCGINRIQNSRLHY*RA*TTMI  502
                NC  C+S  W*   L    IS +  L    +VCC   R +++      A*TTMI
Subject  14514  NCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMI  14675

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 15448 to 15768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 32/107(30%) 0/107(0%) Minus/Plus
Query      150  GDYFECGLCHNKPYVGREVVFARKYIGGRGIEVTTGKNYTSNNWNESSYVINVTIKNGIARTVVNSSYTQTDVTGLPKDFNRIYKITKIVSVDSNLYPGCFSASKLD  470
                G + E  + HN PYV RE +  R+Y G    E+ TG+N+T N+W+ES Y + +++        VN+ +  +D+ G+ ++   I       +VD+  +PG +  S ++
Subject  15448  GKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPGKYDDSIIE  15768

Nucleotide Sequence (897 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
90
180
270
360
450
540
630
720
810
897

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
666.4 3612.0 31% 0 88% NC_004667
503.3 1226.4 34% 1.334e-141 28% NC_022072
388.7 821.2 52% 4.061e-107 32% NC_016509
294.3 618.9 23% 7.027e-84 30% NC_029783
141.3 463.4 16% 3.759e-62 36% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 12

Range 1: 7117 to 8007 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
666.4 bits(1448) 0.0 295/297(99%) 0/297(0%) Minus/Plus
Query        2  SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTS  892
                SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDR VTALFSCIFTACVERLKYVVDERWLFYHGMDTAELA ALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTS
Subject   7117  SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTS  8007

Range 2: 7115 to 8008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
641.6 bits(1394) 0.0 276/298(93%) 0/298(0%) Plus/Minus
Query        1  PTYQYLTAAD*I*GYHHH*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQXXXXXXXXXXXXEHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATFHPLHISNALRTQ*RCRRKAQLRVYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYKTST*TDERQTNLKPA*ETCKR*VPFCPTNLITTSCCWTNGFPSPLLNELC*RPPRRKSPSVHAPQSHHNPRYNRDRR*NSCSQTLPGCTLMCCASVNLH*T  894
                PTYQY TAAD*I*GYHH *LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPP S*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATF PL I +ALRTQ*+C++KAQLR YRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYK ST*TDERQTNLKPA*ETCKR*VPFCPTNLITTSCCWTNGFPSPLLNELC*RPPRRKSPSVHAPQS HNPRYNRDRR*NS  QT  G T  CCA VNL *T
Subject   7115  PTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPPAS*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATFRPLRILSALRTQ*KCKKKAQLRTYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYKKST*TDERQTNLKPA*ETCKR*VPFCPTNLITTSCCWTNGFPSPLLNELC*RPPRRKSPSVHAPQSRHNPRYNRDRR*NSYFQT*RGYTSRCCALVNLR*T  8008

Range 3: 7114 to 8007 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
611.4 bits(1328) 0.0 273/298(92%) 0/298(0%) Plus/Minus
Query        2  RRINI*RLPTKYEAXXXXXXXXXXXXSPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQIVPQCNRQLRSVHPVVEEPPFIHYIFQTLYARSKDAGEKRSYASIVVDYILPRYVLRQWRIVQLGFYVCFHHKRIRRQHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRVITTHVTTAIGVEIPVLKRYQVAL*CVALR*TYTRP  895
                RRINI RLPTKY+AIIT NYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHL HESTLRFVVLTDIQFIGVVLPDVPQIVPQC+RQLRSVHPVVEEPPF+HY+F  LYARSK+A +KRSYA IVVDYILPRYVLRQWRIVQLGFYVCFHH+RIR QHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRV+TTHVTTAIGVEIP+ KR +V L  VAL *TY RP
Subject   7114  RRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLLHESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQLRSVHPVVEEPPFVHYVF*ALYARSKNARKKRSYAPIVVDYILPRYVLRQWRIVQLGFYVCFHHERIRSQHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRVVTTHVTTAIGVEIPIFKRDEVTLQGVALW*TYARP  8007

Range 4: 7116 to 8006 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
583.0 bits(1266) 0.0 274/297(92%) 0/297(0%) Minus/Plus
Query        3  V*CRFTEAQHIKVQPGNV*EQEFQRRSRL*RGL**LCGA*TEGDFLXXXXXXXXXXXGDGKPFVQQHDVVIRLVGQKGT*RLQVSQAGFRFVCLSSVYVDVLYAYGESRRKTQVGQYAIVEVRNGAEYSLPR*TRNCAFLLHLYCVRRAFEICSG*KVALLPRDGHCGVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHETGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*W***PHI*SAAVRY*YV  893
                V* RFT+AQH++V P +V*+ EFQRRSRL*RGL* LCGA*TEGDFLRGGR*QSSFSRGDGKPFVQQHDVVIRLVGQKGT*RLQVSQAGFRFVCLSSVYVD LYA+GESRRKTQVGQYAIVEVRNGAEYSLPR* RNCAF LH YCVRRA +I SG KVALLPRDGHCGVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHE GGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS* ***P+I*SAAV Y*YV
Subject   7116  V*RRFTKAQHLEV*PRHV*K*EFQRRSRL*RGL*RLCGA*TEGDFLRGGR*QSSFSRGDGKPFVQQHDVVIRLVGQKGT*RLQVSQAGFRFVCLSSVYVDFLYAHGESRRKTQVGQYAIVEVRNGAEYSLPR*VRNCAFFLHFYCVRRALKIRSGRKVALLPRDGHCGVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHEAGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YV  8006

Range 5: 7380 to 7670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 93/97(96%) 0/97(0%) Plus/Minus
Query      339  V*YCRMSPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV*DVNIDG*KTNEPK  629
                V*YCRMSPKLFLNA ANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVT LSW*TIFCPVTYFDNGVLSNLGFTSAFT+SV*+VNIDG*KTNEPK
Subject   7380  V*YCRMSPKLFLNAAANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTHLSW*TIFCPVTYFDNGVLSNLGFTSAFTMSV*EVNIDG*KTNEPK  7670

Range 6: 7710 to 7931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 74/74(100%) 0/74(0%) Plus/Minus
Query       78  NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  299
                NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA
Subject   7710  NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  7931

Range 7: 7116 to 7340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.5 bits(368) 0.0 74/75(99%) 0/75(0%) Plus/Minus
Query      669  SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD  893
                SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHF VLRFGKPTLD
Subject   7116  SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFKVLRFGKPTLD  7340

Range 8: 7968 to 8006 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 12/13(92%) 0/13(0%) Plus/Minus
Query        3  DVSISNGCRLNMR  41
                DVSISNGCRLN+R
Subject   7968  DVSISNGCRLNIR  8006

Range 9: 7517 to 7930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
302.6 bits(654) 0.0 131/138(95%) 0/138(0%) Minus/Plus
Query       79  A*LRFSPASLLRA*SV*NM*WMKGGSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD  492
                A*LRF  A LLRA*S *N *W KGGSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*+RWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD
Subject   7517  A*LRFFLAFLLRA*SA*NT*WTKGGSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*SRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD  7930

Range 10: 7115 to 7351 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 70/79(89%) 0/79(0%) Minus/Plus
Query      658  GLV*VYRSATH*SATW*RLRTGISTPIAVVTWVVMTLWRMNXXXXXXXXSLTKLV*QR*RKAICPATRCCYQIGWTKGH  894
                GL *VY+SAT *S T  RL+ GISTPIAVVTWVV TLWRMN*RRFSSRRSLTKLV*QR*RKAICPATRCCYQIGWTKGH
Subject   7115  GLA*VYQSATP*SVTSSRLKIGISTPIAVVTWVVTTLWRMN*RRFSSRRSLTKLV*QR*RKAICPATRCCYQIGWTKGH  7351

Range 11: 7430 to 7474 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      535  W*KQT*NPSWTIRHC  579
                W*KQT*NPSWTIRHC
Subject   7430  W*KQT*NPSWTIRHC  7474

Range 12: 7961 to 8008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 14/16(88%) 0/16(0%) Minus/Plus
Query        1  MIASYLVGSR*ILIRR  48
                MIA YLVGSR ILIRR
Subject   7961  MIALYLVGSRWILIRR  8008

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 14

Range 1: 8181 to 9071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
503.3 bits(1092) 0.0 223/297(75%) 0/297(0%) Minus/Plus
Query        2  SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTS  892
                S+VGLPKRNTLKCNLVTFENRNFNADRGCNVGCDD +A EL  +F   VV+ ++LA+V++  LSSN  LL DWLDKR P AY+ LK  L  FVFHPS+L  YTLMVKADVKPKLD+TPL KYVTGQNIVYHD  VTALFSCIFTA VERLK+VV + W+FYHGMD   LA  +  +LGDIR Y  YELDISKYDKSQ++LMKQVEELILLTLGVD+EVL TFFCGEYDS+V   +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG +  Y+VVSGDDSLIFSR  LDIDTS
Subject   8181  SNVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDLMAEELVALFMRTVVDSSKLAQVSQDRLSSNEFLLGDWLDKRTPAAYRGLKGKLYDFVFHPSLLLKYTLMVKADVKPKLDDTPLYKYVTGQNIVYHDSCVTALFSCIFTAVVERLKFVVSDNWVFYHGMDIDSLAQRISADLGDIRAYTCYELDISKYDKSQASLMKQVEELILLTLGVDKEVLDTFFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTS  9071

Range 2: 8777 to 8992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 50/72(69%) 0/72(0%) Plus/Minus
Query       81  PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  296
                PL+ TDNKV  T +FPN V APPLRL* PTD TNS     T LSYSPQK V KTSLSTP VK I+SSTCF+R
Subject   8777  PLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSPQKNVSKTSLSTPRVKRISSSTCFIR  8992

Range 3: 8486 to 8728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 47/81(58%) 0/81(0%) Plus/Minus
Query      345  YCRMSPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV  587
                Y  MSP+  L   A  ++S+PW* + LS TT F  ST AVK+ E +AVT  S *T+F PVTY  +GV SNLGFTSAFTISV
Subject   8486  YALMSPRSALIL*ARLSISMPW*NTQLSLTTNFNLSTTAVKIHENNAVTHES**TMF*PVTYLYSGVSSNLGFTSAFTISV  8728

Range 4: 8180 to 8404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 39/75(52%) 0/75(0%) Plus/Minus
Query      669  SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD  893
                SNQS +   LL      T A     TT     + +S A  SS PTLQPRSALKFLFS VTRLH  V  FG PT D
Subject   8180  SNQSPSRNSLLLNLSCDTCASFEESTTVRMNRATNSSAIRSSHPTLQPRSALKFLFSKVTRLHLRVFLFGSPTFD  8404

Range 5: 8736 to 8984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 35/83(42%) 0/83(0%) Plus/Minus
Query       89  YYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFI  337
                ++ QQG +   +  P V TT +PL  +RQ   LR   H  +I TTKE   +  IN +  E +L HL H+  LR VVLT +QFI
Subject   8736  HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLRG*RHQTVIFTTKERV*DLLINPQS*ENKLFHLLHQRRLRLVVLTYVQFI  8984

Range 6: 8394 to 8687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 32/98(33%) 0/98(0%) Plus/Minus
Query      386  QLRSVHPVVEEPPFIHYIFQTLYARSKDAGEKRSYASIVVDYILPRYVLRQWRIVQLGFYVCFHHKRIRRQHRRMKDKRT*SPLERLVSVRCPFVQPI  679
                Q   +H +V+ P   H+  Q  +   +D  ++R  A I+++ +L   VL Q  ++QLG ++  HH RI +Q  R+K++     L+  VS R P +QPI
Subject   8394  QAVDIHAMVKHPVIAHHELQPFHHCREDTRKQRCDARIMINNVLTSDVLVQRCVIQLGLHISLHH*RIFKQ*TRVKNEIIELTLQTSVSCRSPLIQPI  8687

Range 7: 8178 to 8303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 21/42(50%) 0/42(0%) Plus/Minus
Query      770  QFMRHRVITTHVTTAIGVEIPVLKRYQVAL*CVALR*TYTRP  895
                Q +RH++IT H+ TAIG+EI +LK Y++AL  V L   + RP
Subject   8178  QLLRHKIITPHIATAIGIEISILKSYEIALESVPLWKPHIRP  8303

Range 8: 8653 to 8862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 30/70(43%) 0/70(0%) Minus/Plus
Query      211  GSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSM  420
                G  T  W   +W   *  I  T   T  MNW  VSTT+L+ L *+RW+S +S*   LI +    SFVV+M
Subject   8653  GCFTMAWISTAWLRG*VRI*VT*ERTRVMNWT*VSTTSLKRL**SRWKSLFS*LWGLIRRS*TRSFVVNM  8862

Range 9: 8194 to 8295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 18/34(53%) 0/34(0%) Minus/Plus
Query      778  YRSATH*SATW*RLRTGISTPIAVVTWVVMTLWR  879
                ++  T  SA  * LR  IS PIAV  W VM LWR
Subject   8194  FQRGTLSSAIS*LLRIEISMPIAVAMWGVMILWR  8295

Range 10: 8483 to 8611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 14/43(33%) 0/43(0%) Minus/Plus
Query      462  LYAYGESRRKTQVGQYAIVEVRNGAEYSLPR*TRNCAFLLHLY  590
                +YA GE   + QVG +  V+VR+ +E+ L    R+    ++L+
Subject   8483  IYANGEG*CEAQVG*HTAVQVRHWSEHCLS*FVRHSVVFVYLH  8611

Range 11: 8888 to 8977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/30(40%) 0/30(0%) Minus/Plus
Query       96  GIGVVCRLSEAQWWC*HVVGK*FSLVHLVV  185
                G+ +V   SEA+ WC H+V +    ++LVV
Subject   8888  GVSLVGWESEAKRWCEHLVREHSGALYLVV  8977

Range 12: 8206 to 8307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 17/34(50%) 0/34(0%) Plus/Minus
Query      766  PSVHAPQSHHNPRYNRDRR*NSCSQTLPGCTLMC  867
                P    P  HH P  NRDR *N  SQ L  CT  C
Subject   8206  PPTPPP*DHHTPHCNRDRH*NFYSQKLRDCT*EC  8307

Range 13: 8485 to 8778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 27/98(28%) 0/98(0%) Plus/Minus
Query      295  EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATFHPLHISNALRTQ*RCRRKAQLRVYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AY  588
                E  E CRTY  P+H      C  +      P  + P  G+  ++     S      *R  +    R    +  S   RT T    PTW     SP AY
Subject   8485  ETLETCRTYLCPIHNTCTLLCHLDPHLSSEPGCRYPCHGKTPSYRSPRTSTFPPLP*RYTKTTL*RTNHDKQCSDQ*RTCTAVCHPTWASHQPSPLAY  8778

Range 14: 8821 to 8943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 16/41(39%) 0/41(0%) Plus/Minus
Query      130  TTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQ  252
                T C HH  AS+S+ T   P    +   H HHKR   +  YQ
Subject   8821  TKCSHHRFASDSQPTRLTP*RLKTPNCHIHHKRTCLRPPYQ  8943

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 7

Range 1: 7641 to 8525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
388.7 bits(842) 0.0 176/295(60%) 0/295(0%) Minus/Plus
Query        8  SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDID  892
                S +G PKRN+LKCNLVTFE+RNFNADRGC+V  D   A EL  +FF+  V+ ++LAE     +S N +  S WLD R+  A +SL   L SFV+  S +T Y LMVK+D KPKLD+TPL +Y+TGQNIVYHDR +TA+FS IFT  VERLKYV+  + L YHGM T + +  + + LGD+  YY YELDISKYDKSQ A MK VE  IL+ LGV   V+  FFCGEYDSVV     ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS+  L ID
Subject   7641  SVIGRPKRNSLKCNLVTFESRNFNADRGCDVSSDPIAATELASLFFDTWVDGSKLAECVGDTISQNAVAASSWLDSRSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVSGYYVYELDISKYDKSQGACMKDVERRILIGLGVSESVVDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQID  8525

Range 2: 7640 to 8176 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 78/179(44%) 0/179(0%) Plus/Minus
Query      357  SPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV*DVNIDG*KTNEPKXXXXXXXXXXXXXSNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD  893
                SP L   +   S+V IPW       +TYF  ST  VKM E  AV  LSW T+FCPV Y   GV SN G  S  TIS+* V  D   T + K    D  A+  LLS+  D      D      SA     T  SK    SS A   S  T  P SALKFL SNVTRLHF + R G+P  D
Subject   7640  SPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIEDLLSSHDDAATAFWDIVSPTHSASLLPSTQVSKNKLASSVAAIGSDETSHPLSALKFLLSNVTRLHFKLFRLGRPITD  8176

Range 3: 8234 to 8452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 38/73(52%) 0/73(0%) Plus/Minus
Query       81  PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  299
                P     NKV +TK+FPNHV APP     PTD T+SF  ++TT SYSPQKK   T   TP    I  ST FM A
Subject   8234  PFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTPRPIKIRLSTSFMHA  8452

Range 4: 7659 to 8105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 48/149(32%) 0/149(0%) Plus/Minus
Query      428  IHYIFQTLYARSKDAGEKRSYASIVVDYILPRYVLRQWRIVQLGFYVCFHHKRIRRQHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRVITTHVTTAIGVEIPVLKRYQVAL*CVAL  874
                + +IFQ L    KD  + RSY+SI+V  +LP  VL   R VQL F V  +HK I    R++ DKR  +  +RL+S R P ++P   +H + G      LC  + +N  +++   +      +   +T+ + +E+  LKR +V    V L
Subject   7659  MQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRPAIEPRRRRHCILGYCVPDALCELTPINPGIKKQAGKLSSSDRVRRDITSPVCIEVSALKRDEVTFQTVPL  8105

Range 5: 8292 to 8441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/50(36%) 0/50(0%) Plus/Minus
Query       92  YGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQN  241
                Y QQ  ++ ++  PR+ T+ +PLR  RQ++ +       IIL+T+ES  N
Subject   8292  YRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIILSTEESIYN  8441

Range 6: 7904 to 8128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 31/75(41%) 0/75(0%) Minus/Plus
Query      405  FRFVCLSSVYVDVLYAYGESRRKTQVGQYAIVEVRNGAEYSLPR*TRNCAFLLHLYCVRRAFEICSG*KVALLPR  629
                F   CL SV  D L AYG  RR+T+VG +A   V   A++ +P *+ NC    HLY   R  EIC+  +   +PR
Subject   7904  FAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPR  8128

Range 7: 7915 to 8127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 29/71(41%) 0/71(0%) Plus/Minus
Query      406  RGRRATFHPLHISNALRTQ*RCRRKAQLRVYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYKTST*TDERQ  618
                RG     +  HIS +    *RC + +QL +Y G    A   T+  A+ PT V RL  P*AY  S  TD RQ
Subject   7915  RGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQ  8127

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 8

Range 1: 7939 to 8700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
294.3 bits(636) 0.0 134/254(53%) 0/254(0%) Minus/Plus
Query      122  GLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN  883
                G  KRNTLKCNLVTFE+RNFNAD  CNVG  + +A  + +   E   ++ R  E +   +S N +    W +KR    +KSL R     VF  + LT YTLMVKAD KPKLD + ++ YV GQNIVY D+   A FS IF    ERLKYV   + LF+ G      A  +   LGDI QYY YELDISKYDKSQ+ LMK  E  +L  LGV+ + L  FF GEYDS V    KEL LS+GSQRRSGGANTWLGN
Subject   7939  GTKKRNTLKCNLVTFESRNFNADTTCNVGSANHIAERIAKFTAETFFDEGRYLECSGDAISQNRVAFGVWAEKREGPKWKSLLRECAKNVFDLTALTRYTLMVKADGKPKLDASVMTNYVAGQNIVYSDKVSIARFSHIFQQVAERLKYVCRGKVLFFCGSTIENFASEVEERLGDISQYYCYELDISKYDKSQAGLMKDTERALLSMLGVESDTLDMFFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGN  8700

Range 2: 8749 to 8820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 13/24(54%) 0/24(0%) Minus/Plus
Query        2  YSYIVVSGDDSLIFSRQPLDIDTS  73
                +  ++ SGDDSLIFS++ LD+DT+
Subject   8749  FDLVLASGDDSLIFSKEKLDLDTT  8820

Range 3: 8526 to 8738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 32/71(45%) 0/71(0%) Plus/Minus
Query       84  LSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  296
                L + DN  +KT +FPNHV APPL  * P D  NS + + T  SYSP+K + + SLSTP++ +   S  F++
Subject   8526  LRSIDNSDNKTIVFPNHVFAPPLLR*LPIDKDNSLLCIETLESYSPEKNISRVSLSTPNILNNALSVSFIK  8738

Range 4: 8235 to 8480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 35/82(43%) 0/82(0%) Plus/Minus
Query      342  *YCRMSPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV  587
                *Y  +SPK    + A  ++  P   S L   TYFKRS    KM E  A+  LS  TIFCP T       S+LG  SA T+SV
Subject   8235  *Y*DISPKRSSTSDAKFSIVEPQKNSTLPLQTYFKRSATC*KMCENLAIDTLSEYTIFCPAT*LVITEASSLGLPSALTMSV  8480

Range 5: 7938 to 8030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 20/31(65%) 0/31(0%) Plus/Minus
Query      792  SQPTLQPRSALKFLFSNVTRLHFNVLRFGKP  884
                ++PTL   SALKF  S VTRLHF+VLRF  P
Subject   7938  AEPTLHVVSALKFRLSKVTRLHFSVLRFLVP  8030

Range 6: 8458 to 8709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 25/84(30%) 0/84(0%) Plus/Minus
Query      113  D*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQ  364
                D  ISQPR+   T  L  +RQ QF     +  ++   KE  +  +++    + +   + H + L  VVL  IQFI ++L  + Q
Subject   8458  DHRISQPRICPATPALTPNRQRQFFVVHRNA*VVFPGKEHIEGIALHA*HTQQRPFSVLH*ARL*LVVLGYIQFITIILRYIAQ  8709

Range 7: 8227 to 8319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 14/31(45%) 0/31(0%) Plus/Minus
Query      503  VDYILPRYVLRQWRIVQLGFYVCFHHKRIRR  595
                + YILP  ++   R V+ GF VCF+H+R+ R
Subject   8227  IHYILPGDIVSHHRGVEFGFTVCFNHERVPR  8319

Range 8: 7948 to 8040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/31(39%) 0/31(0%) Plus/Minus
Query      782  HRVITTHVTTAIGVEIPVLKRYQVAL*CVAL  874
                + +  T+V   + VE+P LK Y+VA   +AL
Subject   7948  YMISRTYVARRVRVEVPALKGYEVAFQRIAL  8040

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 7

Range 1: 5716 to 6252 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 68/179(38%) 0/179(0%) Minus/Plus
Query      356  SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGD  892
                SS+G  K N LK NLVT+E RNF +D G +  C D  A  + + FF+  ++  +L+      ++ N   + +WLDKR    + ++ + + + +   + LTS+ LM+K D KPKLD++ LS   +GQNIVYH   V ALFS IF   VERL  V+   +L   GM   E    L + L +
Subject   5716  SSIGSKKLNRLKQNLVTYEARNFVSDAGADRLCSDMTARRMVDNFFDNYIDYDKLSLEVPDQITFNKRSVGEWLDKRDGRRFNNVLKDMTTQMIPENDLTSFKLMLKTDSKPKLDDSVLSSVPSGQNIVYHRSSVNALFSHIFCQTVERLHRVLKRNFLLATGMSQDEFETYLNDGLNN  6252

Range 2: 6256 to 6489 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 42/78(54%) 0/78(0%) Minus/Plus
Query      122  IRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN  355
                ++  +  E+DISK+DKSQ  L+KQ+EE++L  LGVD EVL+ ++  EY+SV  T  K L +SV +QRR+GG+NTWLGN
Subject   6256  VQNLFCSEVDISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGN  6489

Range 3: 6541 to 6603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 10/21(48%) 0/21(0%) Minus/Plus
Query        8  SYIVVSGDDSLIFSRQPLDID  70
                +++  SGDDSL+ SR P+  D
Subject   6541  TFVCFSGDDSLVLSRDPIYFD  6603

Range 4: 6277 to 6480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 29/68(43%) 0/68(0%) Plus/Minus
Query      131  PRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQF  334
                PRV TT  PLR  R       R+  A +LTT    QN  INT+  +Y  L+LF++ TLRFV    + F
Subject   6277  PRVRTTCPPLRVYRNC*TFIERTAHAFVLTTIPPIQNLLINTQATKYHFLNLFYQRTLRFVKFRYVHF  6480

Range 5: 6021 to 6236 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 26/72(36%) 0/72(0%) Plus/Minus
Query      372  LNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV  587
                L   +NS+  IP     L   T    ST   KM E  A T L W*TIF P+   ++   S+ G  S F+I++
Subject   6021  LRYVSNSSCDIPVASKKLRFKTR*SLSTV*QKM*ENKAFTELRW*TIFWPLGTLESTESSSFGLESVFSINL  6236

Range 6: 5715 to 5855 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 20/47(43%) 0/47(0%) Plus/Minus
Query      753  SKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD  893
                SKK+S    A  S      P S  KFL S VTR  F  L F  P  D
Subject   5715  SKKLSTIRLAVISEHNLSAPASLTKFLASYVTRFCFKRLSFLLPIDD  5855

Range 7: 6315 to 6497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 27/61(44%) 0/61(0%) Plus/Minus
Query      114  TKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  296
                T + PNHV  PP+ L   T+       VL TLSYS      KTS STP  +S  SS CF++
Subject   6315  TIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKRRSTISSICFIK  6497

Nucleotide Sequence (303 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
31
62
93
124
155
186
217
248
279
303

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
205.0 1166.4 29% 1.821e-52 83% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 3109 to 3402 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.0 bits(441) 0.0 87/98(89%) 0/98(0%) Minus/Plus
Query        2  *LVGLRRRPFLALRRSFPQVHYSTTAV*LKMKGLMLWCAQRML*THRWAYWRRRV*L*AR**LDRKNFGVKFP*MTLLPLHCGIRCLLGFLWRLWVRP  295
                *LVGLRRRPFLALRRSFPQVHYSTTAV*LKMKGLMLWCAQRML*THRWAYWRRR *L*AR *L+RKNFGVKFP*MT    +CGIRCL G+ WRLWVRP
Subject   3109  *LVGLRRRPFLALRRSFPQVHYSTTAV*LKMKGLMLWCAQRML*THRWAYWRRRA*L*ARS*LERKNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRP  3402

Range 2: 3102 to 3401 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.5 bits(429) 0.0 87/100(87%) 0/100(0%) Plus/Minus
Query        3  GRTQRRHKNPNKHLIPQCKGSKVIQGNFTPKFFRSSYYLAHSYTRRLQ*AHR*VYSILCAHQSIKPFIFS*TAVVE**TCGKERRNARKGLRRSPTSY*T  302
                GRTQRRH+ P+KHLIPQ +  +VI GNFTPKFFRSSY LAHSY RRLQ AHR*VYSILCAHQSIKPFIFS*TAVVE**TCGKERRNARKGLRRSPTSY T
Subject   3102  GRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFFRSSYDLAHSYARRLQYAHR*VYSILCAHQSIKPFIFS*TAVVE**TCGKERRNARKGLRRSPTSYQT  3401

Range 3: 3103 to 3402 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.0 bits(404) 0.0 87/100(87%) 0/100(0%) Plus/Minus
Query        2  GPHPKTPQKSQ*APYSAMQR**SHSRKLHSKILSIQLLPCSQLHATXXXXXXXXL*HSLCAPEHQAFHLQLNRGRRIVNLWKRTT*CQKRPSSQPHELLN  301
                GPHPKTP+ S+*APYSA+++ *SH RKLHSKILS QL PCSQL ATSPV PPVSL*HSLCAPEHQAFHLQLNRGRRIVNLWKRTT*CQKRPSSQPHEL N
Subject   3103  GPHPKTPRISR*APYSAIRKW*SHLRKLHSKILSFQLRPCSQLRATSPVCPPVSL*HSLCAPEHQAFHLQLNRGRRIVNLWKRTT*CQKRPSSQPHELPN  3402

Range 4: 3102 to 3401 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.8 bits(394) 0.0 97/100(97%) 0/100(0%) Minus/Plus
Query        3  GLVARGAATKAXXXXXXXXXXXXXFYDRGLTEDERLDALVRTENAINSPVGLLETSRVAVSKVVAGSKEFWSEVSLNDFTTFALRNKVLIGIFVASLGAA  302
                GLVARGAATKAFSGITSFFSTGSLFYDRGLTEDERLDALVRTENAINSPVG+LETSRVAVSKVVAG+KEFWSEVSLNDFTTF LRNKVLIGIFVASLGAA
Subject   3102  GLVARGAATKAFSGITSFFSTGSLFYDRGLTEDERLDALVRTENAINSPVGILETSRVAVSKVVAGTKEFWSEVSLNDFTTFVLRNKVLIGIFVASLGAA  3401

Range 5: 3101 to 3310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
163.7 bits(351) 0.0 65/70(93%) 0/70(0%) Minus/Plus
Query       94  GFSSSWGCDEGLFWHYVVLFHRFTILRPRFN*R*KA*CSGAHRECYKLTGGLTGDVACSCEQGSSWIERI  303
                GF SSWGCDEGLFWHYVVLFHRFTILRPRFN*R*KA*CSGAHRECYKLTGG TGDVA SCEQG SW ERI
Subject   3101  GFGSSWGCDEGLFWHYVVLFHRFTILRPRFN*R*KA*CSGAHRECYKLTGGHTGDVARSCEQGRSWNERI  3310

Range 6: 3350 to 3403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 15/18(83%) 0/18(0%) Minus/Plus
Query        1  IAE*GAYWDFCGVFGCGP  54
                IAE*GAY D  GVFGCGP
Subject   3350  IAE*GAYRDIRGVFGCGP  3403

Range 7: 3212 to 3403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.6 bits(290) 0.0 60/64(94%) 0/64(0%) Plus/Minus
Query        1  GAAPKDATKIPISTLFRNAKVVKSFKETSLQNSFDPATTLLTATRDVSSKPTGEFIAFSVRTRA  192
                GAAPKDAT IPISTLFRN KVVKSFKETSLQNSF PATTLLTATRDVSS PTGEFIAFSVRTRA
Subject   3212  GAAPKDATNIPISTLFRNTKVVKSFKETSLQNSFVPATTLLTATRDVSSMPTGEFIAFSVRTRA  3403

Range 8: 3101 to 3169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.6 bits(119) 0.0 23/23(100%) 0/23(0%) Plus/Minus
Query      235  EPVEKNDVMPEKAFVAAPRATKP  303
                EPVEKNDVMPEKAFVAAPRATKP
Subject   3101  EPVEKNDVMPEKAFVAAPRATKP  3169

Nucleotide Sequence (501 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
51
102
153
204
255
306
357
408
459
501

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
148.6 148.6 32% 3.678e-35 39% NC_016509
298.9 935.2 21% 2.086e-80 42% NC_004667
230.2 434.2 27% 1.031e-59 30% NC_022072
136.2 136.2 31% 1.949e-31 39% NC_029783
95.9 95.9 30% 2.68e-19 33% NC_009992

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 2531 to 3004 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 61/158(39%) 0/158(0%) Minus/Plus
Query        1  VLQVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALNT  474
                V ++A+A++KK    F++ LMFPIEL   +G + + ++   VVR+GD + Y VG  G+ Y HS   +  FF +  V+  S + + +EY G R GYH F++C      ++    R +  TF G S+V +P +    + F+ + LDSDFVDR+YSY LNT
Subject   2531  VFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNT  3004

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 1959 to 2426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
298.9 bits(646) 0.0 121/156(78%) 0/156(0%) Minus/Plus
Query        1  QVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALNT  468
                QVAEAMDKKG L FDIALMFP+ELLYGNGEVYLE++DTLV REGD L YNVG CGE+Y HSF+NVSGFFT +YVR SS NV+KLEYEG RCGYHH TMCRAQK    EVT RS+VP+F+GKS+VF+PVV G+ V FK++VLDSDFVDRIYSYALNT
Subject   1959  QVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNT  2426

Range 2: 1958 to 2425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.6 bits(473) 0.0 108/156(69%) 0/156(0%) Plus/Minus
Query        2  VLRA*E*ILSTKSESRTKDLKHTLVPSTTGKNTIDLPRNVGTMDLCVTSALCNF*ALHIVK*WYPHRQPSYSSLYTFLEEART*ALVKKPLTLAKEWT*TSPHMPTL*VNASPSRTTNVSTSSRYTSPFPYNNSIGNMRAISKARHPFLSIASATC  469
                VL A*E*ILSTKSESRT  LK TL P+TTG NT DLP N GT DL VTS   +F*ALHIV+*W P R PSYSSL TF +E RT*  VK PLTL KE +  SPH PTL*   SPS  TNVS+SS+ TSP PYNNS GN+RA+SK   PFLSIASATC
Subject   1958  VLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATC  2425

Range 3: 1968 to 2423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 66/152(43%) 0/152(0%) Plus/Minus
Query        4  VEGVRIDSVNKIRIQNQRLKAHLGPINNRQKHDRFTKKRGDNGPLRNLRALQLLSSAHREVMVPTPATLVLQLIHISRRSTDVGVGKEAAYVGEGMDINFSAHANIVS*RIPFPNYQRVDVL*VHLPISIQQFDREHEGYIKGQTPLLIHSL  459
                VE V ID V+K+RI++  LK H     NR +H RF  +R D  P+RNL +  LLS  H E+MV T  +L+L L H+  RS  +  G++ AYV EGM I+ +   NIV   I FP +QR++   V+  +++QQ   EH+ Y++ Q  LLIHSL
Subject   1968  VERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSL  2423

Range 4: 2201 to 2425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 36/75(48%) 0/75(0%) Minus/Plus
Query        2  V*AGVRGLPVWVPSLHDVQSSKVAERGGYAKVHCPHVSW*IYRVFACC*WDQGVL*VXXXXXXFC*QNLFLRPQH  226
                V*A V G+P+W+PS H V  S+V    GY  V  P V   I  V  CC W   VL*     FG C Q+LFLR QH
Subject   2201  V*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQH  2425

Range 5: 1969 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 24/57(42%) 0/57(0%) Minus/Plus
Query      288  RLWIRRGVWPLI*PSCSRSNCCMEMGRCT*RTSTRW*FGKGMR*LTMLACAEKFMSI  458
                RLWIRR  W   *  CS  +CC    + T + S RW* GK +   TML    + M+I
Subject   1969  RLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNI  2139

Range 6: 2200 to 2424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 32/75(43%) 0/75(0%) Plus/Minus
Query        3  C*GRKNRFCQQNPNPEPKT*STPWSHQQQAKTR*IYQETWGQWTFA*PPRSATFELCTS*SDGTHTGNPRTPAYT  227
                C* R+NR C+Q+PN    +* T  +  QQ  T  I   T G  T+ *P    T E  T * DG H G P T A T
Subject   2200  C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T  2424

Range 7: 1969 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 24/57(42%) 0/57(0%) Plus/Minus
Query      288  NGHKLLRTCQHCKLTHPLPELPTCRRPLGTPPHFHTTIRSGT*GLYQRPDTPSYP*P  458
                N H    T QHC+  + LP  PT R        + TT   GT* L ++P  PSYP*P
Subject   1969  NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCRKPAHPSYP*P  2139

Range 8: 2200 to 2424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 32/75(43%) 0/75(0%) Minus/Plus
Query        3  CISWSTRVAGVGTITSRCAELKSCRARRLRKGPLSPRFLVNLSCFCLLLMGPRCALSLWFWIRILLTESILTPST  227
                C+S S R   V TI S C  L+S    RLR G  S R   N  C  LL +   C L     IR L T SI T ST
Subject   2200  CLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRST  2424

Range 9: 1949 to 2035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 15/29(52%) 0/29(0%) Minus/Plus
Query      392  IRIASRRGYG*EGVSGL*YSPHVPDRIVV  478
                I  A  RGYG*EG +G  +S +VP  +VV
Subject   1949  IPAAGSRGYG*EGCAGFRHSSYVPRGVVV  2035

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 2678 to 3145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 91/156(58%) 0/156(0%) Minus/Plus
Query        1  QVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALNT  468
                ++AEA+D KG + FD+  M P+ELL G+GEVYLE++DT V R GD L Y+VG+CGE Y H F+ VS + T+AY R  S  VYK+EYEG R GYHH T+ R+QK+ + EVT+R +V +F  K+IV +PV++GT + FKSLVLD+DFVDR+YSYALNT
Subject   2678  ELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNT  3145

Range 2: 2683 to 2844 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 29/54(54%) 0/54(0%) Plus/Minus
Query      302  SPHMPTL*VNASPSRTTNVSTSSRYTSPFPYNNSIGNMRAISKARHPFLSIASA  463
                SP  PT  +N SP+R T VS SS+YTSP P ++S G+M+  SK   PF S ASA
Subject   2683  SPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASA  2844

Range 3: 2917 to 3144 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 36/76(47%) 0/76(0%) Plus/Minus
Query        2  VLRA*E*ILSTKSESRTKDLKHTLVPSTTGKNTIDLPRNVGTMDLCVTSALCNF*ALHIVK*WYPHRQPSYSSLYT  229
                V +A E   STKS S T DLK   VPS TG  TI    N  T    VTS +  F*    VK W P   PSYS+L T
Subject   2917  VFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*T  3144

Range 4: 2909 to 3142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 26/78(33%) 0/78(0%) Plus/Minus
Query        4  VEGVRIDSVNKIRIQNQRLKAHLGPINNRQKHDRFTKKRGDNGPLRNLRALQLLSSAHREVMVPTPATLVLQLIHISR  237
                V+G+RI +++++ +++ RLK H+  + +R   + F  KR ++ P  NL     L+S +R V+V  P TL+L  I   R
Subject   2909  VQGIRIHAIHEVSVKH*RLKRHVRSLQHRYHDNCFCGKR*NHHPPGNLLGSDFLTSRNR*VVVAYPVTLILHFIDSPR  3142

Range 5: 2684 to 2845 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 16/54(30%) 0/54(0%) Plus/Minus
Query      301  FSAHANIVS*RIPFPNYQRVDVL*VHLPISIQQFDREHEGYIKGQTPLLIHSLG  462
                FSA  + V   +   ++  V +L*VHL  + QQ   +HE  ++   P  +   G
Subject   2684  FSAETHGVYQFVSSTSHAGVQLL*VHLTTTSQQLYGKHEAQVEDHHPFHVQRFG  2845

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 3075 to 3539 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.2 bits(291) 0.0 61/155(39%) 0/155(0%) Minus/Plus
Query        4  QVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALN  468
                +VA ++  KG   FDI  M P+EL+  +G   +++++T+V R+GD LTY+VG  G+ Y HSF  V    T   V  S    Y  EY G RCGYHH  M      ++     R I  T  GK+IV  P      + FK + +D++FV R+Y+YALN
Subject   3075  EVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALN  3539

Plum bark necrosis and stem pitting-associated virus, complete genome

Sequence ID: Length: 14214 Number of Matches: 1

Range 1: 3041 to 3493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 50/151(33%) 0/151(0%) Minus/Plus
Query        4  AMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALN  456
                AM+KKG +   +A MF  EL   NG          V REGD LTY VG  GE YVHSF  +S + ++    +  + +Y +E  GC   Y  FT+     + S   T R        K+++     DG +    S+ +D DF  R+  Y  N
Subject   3041  AMEKKGAVIAKVAFMFCPELALSNGTCSYPGAGVTVCREGDLLTYFVGDSGESYVHSFEVLSSYVSSERAMSEQKLLYSVELSGCYGPYVLFTVSITSDVMSKPTTSRVFPAWRRNKTLIKYVKYDGVRHHLNSIYVDRDFATRMLLYMSN  3493

Nucleotide Sequence (507 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
51
102
153
204
255
306
357
408
459
507

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
372.7 2031.2 23% 1.327e-102 96% NC_004667
53.8 53.8 27% 1.324e-06 28% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 11661 to 12146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
372.7 bits(807) 0.0 160/162(99%) 0/162(0%) Plus/Plus
Query        8  GFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHRCLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYHAL*PNKL*ELGQVI*GFKRVFQDPN*R*DLCIAFCGQQSSKERQG*HHGSESTTIAIGRQ  493
                GFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHR LGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYHAL*PNKL*ELGQVI*GFKRVFQDPN*R*DLCIAFCGQQSSKERQG*HHGSESTTIAIGR+
Subject  11661  GFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHRRLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYHAL*PNKL*ELGQVI*GFKRVFQDPN*R*DLCIAFCGQQSSKERQG*HHGSESTTIAIGRR  12146

Range 2: 11662 to 12144 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
370.8 bits(803) 0.0 160/161(99%) 0/161(0%) Plus/Plus
Query        9  GSRI*G*KKIF*NPP*IQIRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSDA  491
                GSRI*G*KKIF*NPP*IQ RF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSDA
Subject  11662  GSRI*G*KKIF*NPP*IQTRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSDA  12144

Range 3: 11661 to 12143 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.0 bits(716) 0.0 159/161(99%) 0/161(0%) Minus/Minus
Query        8  ASDGDXXXXXXXXXXXXXFGRLLSTERDA*ILPLIRVLKNALKSLDDLTQFSQFIGLESVVVNPPFNKKYAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRICIYGGFQKIFFYP*IREP  490
                ASDGDSRRLASMMSSLSFFGRLLSTERDA*ILPLIRVLKNALKSLDDLTQFSQFIGLESVVVNPPFNKKYAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNR+CIYGGF KIFFYP*IREP
Subject  11661  ASDGDSRRLASMMSSLSFFGRLLSTERDA*ILPLIRVLKNALKSLDDLTQFSQFIGLESVVVNPPFNKKYAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRVCIYGGF*KIFFYP*IREP  12143

Range 4: 11798 to 12142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 114/115(99%) 0/115(0%) Minus/Minus
Query      145  RPMAIVVDSLP*CHPCLSLEDCCPQNAMHKSYL*LGS*KTRLNP*MT*PNSHSLLG*RAW*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRQRCTYYHDSKRSALPVQYIPYS  489
                RPMAIVVDSLP*CHPCLSLEDCCPQNAMHKSYL*LGS*KTRLNP*MT*PNSHSLLG*RAW*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPR+RCTYYHDSKRSALPVQYIPYS
Subject  11798  RPMAIVVDSLP*CHPCLSLEDCCPQNAMHKSYL*LGS*KTRLNP*MT*PNSHSLLG*RAW*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRRRCTYYHDSKRSALPVQYIPYS  12142

Range 5: 11654 to 11755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 33/34(97%) 0/34(0%) Minus/Minus
Query        1  SPLHKYIYPFKIVSVSTADFKKFSSILKSENPKS  102
                SPLHKYIYPFKIVSVSTADFKKFSSILKSENP S
Subject  11654  SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLS  11755

Range 6: 11935 to 12144 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 70/70(100%) 0/70(0%) Minus/Minus
Query      282  GVRWR*SSTRFHDVIPVFLWKIAVHRTRCINLTFN*GPEKRA*ILR*PDPILTVYWVRERGSQSAFQQEI  491
                GVRWR*SSTRFHDVIPVFLWKIAVHRTRCINLTFN*GPEKRA*ILR*PDPILTVYWVRERGSQSAFQQEI
Subject  11935  GVRWR*SSTRFHDVIPVFLWKIAVHRTRCINLTFN*GPEKRA*ILR*PDPILTVYWVRERGSQSAFQQEI  12144

Range 7: 11659 to 11880 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 71/74(96%) 0/74(0%) Minus/Minus
Query        6  SRVFPDNGVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKSYLYLRRISKNFLLSLNPRTP  227
                SRVFPD+GVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKS LYLRRI KNFLLSLNPRTP
Subject  11659  SRVFPDDGVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKSCLYLRRILKNFLLSLNPRTP  11880

Range 8: 11936 to 12145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 70/70(100%) 0/70(0%) Plus/Plus
Query      283  ISC*KAD*LPRSLTQ*TVRIGSGHLRI*ARFSGP*LKVRFMHRVLWTAIFQRKTGMTSWKRVDDYRHRTP  492
                ISC*KAD*LPRSLTQ*TVRIGSGHLRI*ARFSGP*LKVRFMHRVLWTAIFQRKTGMTSWKRVDDYRHRTP
Subject  11936  ISC*KAD*LPRSLTQ*TVRIGSGHLRI*ARFSGP*LKVRFMHRVLWTAIFQRKTGMTSWKRVDDYRHRTP  12145

Range 9: 11720 to 11875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 51/52(98%) 0/52(0%) Plus/Plus
Query       67  DFEWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTPLSGKT  222
                DFEWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTP SGKT
Subject  11720  DFEWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTPSSGKT  11875

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 12683 to 13096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 38/138(28%) 0/138(0%) Plus/Plus
Query       75  MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSD  488
                MDK  Y TG+   +EA  E   VV +  +         RGS  T+V   +    S  +  S +   A AYF L GG ++TL       + +  SKD+S       K  + + R+V + L +     +++    +SP+D
Subject  12683  MDKVCYATGLTAVSEAYAEYERVVGENLLEYSTFRIPVRGSTLTLVKSGNEILASYPSEGSTAERKAVAYFTLVGGFSSTLFTADVALSLLCGSKDISRTLERRHKKGLSSERAVHAALDQLQEVKLLQMIETVSPTD  13096

Nucleotide Sequence (1118 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
112
224
336
448
560
672
784
896
1008
1118

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
865.2 4386.9 31% 0 83% NC_004667
519.3 1075.4 46% 2.577e-146 25% NC_022072
287.9 396.0 15% 8.715e-80 33% NC_016509
275.5 461.9 17% 6.199e-73 25% NC_029783
80.8 197.9 21% 3.931e-38 27% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 1059 to 2174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
865.2 bits(1882) 0.0 356/372(96%) 0/372(0%) Minus/Plus
Query        3  RAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFS  1118
                RAFV TTKGWCWFNNERLRGEIYRRRCFSSSFS+GFLM +GFRSLK +RFAGTNILH+PSLNEERTFGWK  DVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKP+E+E+LRELFPELSIQFS+SVRSSHP ANAMRSCFNGIFSRRCG VCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFS
Subject   1059  RAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFSIGFLMHLGFRSLKVIRFAGTNILHMPSLNEERTFGWKGGDVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPREREKLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGNVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFS  2174

Range 2: 1059 to 2174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
755.7 bits(1643) 0.0 312/372(84%) 0/372(0%) Plus/Minus
Query        3  RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILRFSTTVRYRL*SRFG*EVARHV*ISPSCGKKEDLIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSGWMTTPDRLGKLYRKLRKEFPQPLLFLWLQKHIAPV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIASDDSGFWDIGEINICALPPKGALFIERWYV*YVRARKPDGFQRSKAHAHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGSAHERP  1118
                RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVHIHHKTR+ S IA+LRFSTTVR+RL*SRF *+V  HV ISPSCGKKEDLIDSPLHIFNV*DW+AY+ VH+ASF++IREAPPNIEEA+ TTPPGKDS+ETAPHG+S W+TTPDR+G+LYRKL KEFPQ L F  LQKHIAP+*GFFANHCVPLRKH+ QFRVQMGKQ RLVP YQ IGD RNDR*IDLLL+KGIGDGGQDLPSQPCPIASDDSGFWDIGEI++ ALPPKG LFIE W+V*YVRARKP+   RSKA  HQETYRKGR*EATTSVNFSPQPLIVKPTPPFG A++RP
Subject   1059  RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVHIHHKTRIGSRIAVLRFSTTVRHRL*SRFS*KVTGHVRISPSCGKKEDLIDSPLHIFNV*DWIAYMTVHMASFDMIREAPPNIEEAHITTPPGKDSIETAPHGISEWVTTPDRVGELYRKLWKEFPQLLPFPRLQKHIAPM*GFFANHCVPLRKHIAQFRVQMGKQCRLVP*YQSIGDTRNDR*IDLLLIKGIGDGGQDLPSQPCPIASDDSGFWDIGEIDVSALPPKGTLFIE*WHV*YVRARKPNDL*RSKAKVHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRP  2174

Range 3: 1061 to 2176 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
725.0 bits(1576) 0.0 348/372(94%) 0/372(0%) Plus/Minus
Query        1  *EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALADG*LLLTDSENCIEXXXXXXXXXXXXXXXRNTSHLCEGFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPATIAVFGTLGR*TSALFHPKVRSSLSDGMCSMFVPANLTAFNDLKPMRIKKPTEKEDEKQRRXXXXXXXXXXXNQHHPLVVLTNA  1116
                *EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S T+APFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT QFTWPALT*YVKLPPISKKHT PHL EKIPLKQLRMALA+G*LLLT+SENCIESSGKSSLS S S GFRNTSHLCEGFSRIIASL*EN+SHNFVSKWES ADWSLNTSLLV+LETTDE*TSS LRALATEAKISPPNRVLSPATIAVFGTLGR*TS  FHPKVRSSLSDGMCSMFVPANL  FNDLKP  IKKP EKEDEKQRRL*ISPLSLSLLNQHHPLVV TNA
Subject   1061  *EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT*QFTWPALT*YVKLPPISKKHTLPHLLEKIPLKQLRMALANG*LLLTESENCIESSGKSSLSFSLSRGFRNTSHLCEGFSRIIASL*ENISHNFVSKWESNADWSLNTSLLVILETTDE*TSS*LRALATEAKISPPNRVLSPATIAVFGTLGR*TSPPFHPKVRSSLSDGMCSMFVPANLMTFNDLKPRCIKKPIEKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNA  2176

Range 4: 1061 to 2176 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
677.8 bits(1473) 0.0 314/372(84%) 0/372(0%) Minus/Plus
Query        1  GVREHYQRVVLV*Q*EAEGRNLQTSLLLIFLFGRFLDAHGL*IVESRQVCGHEHTTHTIAQ*RAHLWVEERRCLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*PRGGLFICRFEHHQ*AGIEGPIGLAFPFGHEIV*HVFSKGRNDSRKTLTQVRCVSEATGKGEAEGTLSGAFDTVFRVGQE*SSIR*RHAELFQRNLFPEVWWCMLLRYWGELHVSR*SWPRELPRMQPSPRR*RCEAENQ*DPLSFHSWGRFIRV*RPPNRSGFKVCILL*SRIAELRFQS*RGFYGGCVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL  1116
                GV  H+QRVVLV*Q*EAEGRNLQTSLLLIFLF RFLDA  L*IV+   VCGHEHTTH I Q*RA+LWVE RR LSPQCPKNRYRRWR*DTVGRGDLGLRRQCP* RGGLFI RFE+HQ* GI+GPIG+AFPFGHEIV +VFSKGRNDSRKTLT VRCVSEA GKGEAEGTLS AFDTV R+GQE*S IR* HAELFQ NLF EVW C+LLRYWGELHVS  SWP EL  MQ SPRR*RCEAENQ*DPLSFHSWGRF+RV  P N SGFKVC+LL*SRIAELRF S  GFYGGCVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL
Subject   1061  GVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLFDRFLDAPWL*IVKGH*VCGHEHTTHAITQ*RAYLWVEGRRRLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*SRGGLFIGRFEYHQ*TGIKGPIGIAFPFGHEIVRYVFSKGRNDSRKTLT*VRCVSEAAGKGEAEGTLSRAFDTVLRLGQE*SPIR*CHAELFQWNLFQEVW*CVLLRYWGELHVSCQSWPCELSCMQSSPRR*RCEAENQ*DPLSFHSWGRFVRVQ*PSN*SGFKVCVLL*SRIAELRF*SRCGFYGGCVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL  2176

Range 5: 1060 to 1959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
580.7 bits(1261) 0.0 251/300(84%) 0/300(0%) Plus/Minus
Query      218  AAGIYRTHPP*NPRQLWNRNSAILDYSKIQTLKPLRLGGR*TRMNLPQLWKERGSH*FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PTRKTVSKAPERVPSASPFPVASETHRTCVRVFRESLRPFEKTCHTISCPNGKARPIGPSIPAYW*CSKRQMNRPPLG*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDKHLRSSTQRCALH*AMVCVVCSCPQT*RLSTI*SPCASRNLPKRKMRSNDVCKFLPSASHC*TNTTLW*CSRTP  1117
                AAGIYRTHPP*NP +L NR+SAILDYSK QTLKPL+L G  TR NLPQLWKERGSH*FSASHL*RLGL CI  SS GQL* DT*SSPQYRRS H+HTS KRF *NSSAW *RM DYS*P+R+TVSKA ERVPSASPFP ASETHRT VRVFRESLRPFEKT  TISCPNGKA PIGP IP YW* SKR MNRPPL *GHWRRRPRSPLPTVSYRQRR*RFLGHWGD+ LR STQR ALH* M CVVCSCPQT*   TI*S  ASRNL KRKMRSNDVCKFLPSASHC*TNTTLW C +TP
Subject   1060  AAGIYRTHPP*NPHRL*NRSSAILDYSKTQTLKPLQLEGHWTRTNLPQLWKERGSH*FSASHL*RLGLDCIHDSSHGQL*HDT*SSPQYRRSTHYHTSWKRFH*NSSAWH*RMGDYS*PSRRTVSKALERVPSASPFPAASETHRTYVRVFRESLRPFEKTYRTISCPNGKAMPIGPLIPVYW*YSKRPMNRPPLD*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDRRLRPSTQRYALH*VMACVVCSCPQT**PLTI*SQGASRNLSKRKMRSNDVCKFLPSASHC*TNTTLWWCIQTP  1959

Range 6: 1999 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 41/47(87%) 0/47(0%) Plus/Minus
Query       38  NVHTSHHTDQHCRPGNHLPSSLTYRVPPSKLRRYHTTAPRGT*ELNR  178
                NVHTSHHTDQHCRPGNHLPSS TYRV PSKL RY TT PRGT*EL R
Subject   1999  NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCR  2139

Range 7: 1060 to 1542 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
332.8 bits(720) 0.0 139/161(86%) 0/161(0%) Minus/Plus
Query      635  GRS*ALPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CAWALDR*KPSGLRARTYYTYHRSMKSAPLGGRAQMFISPMSQKPLSSLAIGHGWEGRSWPPSPMPLTKRRSIHLSFRASPIGWY*GTNRPCFPIWTRNCVTCFLKGTQ*FAKNPHTGAMCF*S  1117
                GR  A PKGGVGLTMRG*GEKFTDVVASHLPFR*VS*C  ALDR*+  GLRARTYYT H SMKS PLGGRA+  ISPMSQKPLSSLAIGHGWEGRSWPPSPMPL KRRSIH SFR SPI WY*GTNR CFPIWTRNC  CFLKGTQ*FAKNPH GAMCF*S
Subject   1060  GRLYAPPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CTLALDR*RSLGLRARTYYTCHHSMKSVPLGGRAETSISPMSQKPLSSLAIGHGWEGRSWPPSPMPLIKRRSIHRSFRVSPIDWY*GTNRHCFPIWTRNCAICFLKGTQ*FAKNPHIGAMCF*S  1542

Range 8: 1771 to 2175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.5 bits(597) 0.0 118/135(87%) 0/135(0%) Minus/Plus
Query        2  KM*SGESMRSSFFPQLGEIHTCLATS*PKRLQSLYLTVVENRRIAIPELTRVLWWMCTIYPRSRWQRLWIRRVRWYSI*LLCSPWSCCMVTAKFTWRNSIR**RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL  406
                KM*SGESMRSSFFPQLGEI TC  T * KRLQSL LTVVENRR AI E  RVLWWMCTIYPRSR QRLWIRRVRW+S *LLCSPWSCC VT KFTW+NSIR *RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL
Subject   1771  KM*SGESMRSSFFPQLGEIRTCPVTF*LKRLQSLCLTVVENRRTAILEPMRVLWWMCTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL  2175

Range 9: 1609 to 1716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 30/36(83%) 0/36(0%) Minus/Plus
Query      461  GVVIHPLTPCGAVSTESFPGGVVVYASSILGGASRI  568
                GVV H L PCGAVS ESFPGGVV+ ASSILGGASRI
Subject   1609  GVVTHSLMPCGAVSMESFPGGVVMCASSILGGASRI  1716

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 9

Range 1: 1778 to 2887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
519.3 bits(1127) 0.0 212/370(57%) 0/370(0%) Minus/Plus
Query        9  RAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT  1118
                R  V  ++GWCW+N  RLR  +  R    S ++   +M MG R ++ VR A     H+ S  E  T  +    V L       ++AGDR R G E+LASVANALNQEEVYSSVVS I NRL L+DQS+LL+HLD +LC+MF+QRDA+IREKP+HRCD  LKP EK+ ++E FPEL+I F +SVRSSHP ANA+R CFN  FS+RC  V F DIGGS TYHVKAG VNCHVCNPVLDVKD+KRRI+E+L++++  G+ Y S+++++EAAS+S+SYCS  SQ C  R + G+MVDVYD+   ++AEA+D KG ++FDL  M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T
Subject   1778  RRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYTAKEVMDMGLRKVRMVRTAKVGFYHVVSKWELLTLRYPEKIVDLQTCRPVNVLAGDRVRAGNEVLASVANALNQEEVYSSVVSGIANRLALKDQSSLLAHLDNRLCEMFAQRDALIREKPNHRCDTMLKPSEKDMIKEAFPELTITFLDSVRSSHPVANAVRGCFNACFSKRCANVKFVDIGGSLTYHVKAGDVNCHVCNPVLDVKDMKRRISEMLYMTSGAGEVYKSTEIISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLT  2887

Range 2: 2305 to 2871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 97/189(51%) 0/189(0%) Plus/Minus
Query       25  TLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALADG*LLLTDSENCI  591
                T E  C Y SP  PT     SP+  T VS+SSK TSPLP +SSTG+++ KS    PF S ASA      S TST+ P S L    C+   Q*+ + +AAS   S+    SP       IS ILRF S TS TGL TWQFT PALT  VKLPPIS   T  HL EK  LK  R ALA G*LLLT+S+N I
Subject   2305  TRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASANSSNPRS*TSTMYPPSHLTEHSCEGVEQ*EMERDAASEIISVLL*TSPAPDVMYSISEILRFISFTSSTGLQTWQFTSPALTW*VKLPPISTNFTLAHLFEKQALKHPRTALATG*LLLTESKNVI  2871

Range 3: 2032 to 2247 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 39/72(54%) 0/72(0%) Plus/Minus
Query      649  SHLCEGFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPA  864
                SH   GFSRI AS * N+SHN +S+  +  D S +   L + ETTDE*TSSWLRA AT+A+ S P    SPA
Subject   2032  SHRWLGFSRISASR*ANISHNLLSRCANNDD*SFSAKRLAIPETTDE*TSSWLRAFATDARTSLPALTRSPA  2247

Range 4: 2033 to 2515 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 61/161(38%) 0/161(0%) Plus/Minus
Query      381  LIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSGWMTTPDRLGKLYRKLRKEFPQPLLFLWLQKHIAPV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIAS  863
                L DSPLHI  +   +A +AVH+A FN++ +A PNI+E + + P  +  ++T    VS  MTTP  + +   KL K     +L   LQ  +APV     N  + L +H+T   ++M +Q  L+ Q Q I D R+DR ++LLLVK +  G Q+L + P  I+S
Subject   2033  LRDSPLHILYIQHGIANMAVHIAGFNMVGQASPNIDELHVSAPL*ETGIKTPADCVSNRMTTPH*I*ERNCKLWKSLLYHVLL*GLQHSVAPVVRLLTNKRIALSEHLT*SVIKMCQQR*LILQCQTISDPRDDRRVNLLLVKSVCYGRQNLIASPDAISS  2515

Range 5: 2612 to 2872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 22/87(25%) 0/87(0%) Plus/Minus
Query       24  YVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILR  284
                + R+ + I  +  T+ V Q ++   H  ++ L V+   T QQL+G+H++ +E      +     L+   IV ++H +  +   A LR
Subject   2612  HTRKFVRI*FSAETHGVYQFVSSTSHAGVQLL*VHLTTTSQQLYGKHEAQVEDHHPFHVQRFG*LVEPKIVDVNHVSPFTPNGAFLR  2872

Range 6: 2242 to 2472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 30/77(39%) 0/77(0%) Minus/Plus
Query      424  VRCVSEATGKGEAEGTLSGAFDTVFRVGQE*SSIR*RHAELFQRNLFPEVWWCMLLRYWGELHVSR*SWPRELPRMQ  654
                VR   EA  +G  +G  S A++ V R  +E*SS  *R   +F      EV    + RYWG+L +  *S   ELP +Q
Subject   2242  VRHYVEALREGHDKGGFSRAYNYVLRFSEE*SSCC*RSPRVF*CLFLKEVR*REVRRYWGKLDLPC*SRRCELPCLQ  2472

Range 7: 2034 to 2261 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 27/76(36%) 0/76(0%) Minus/Plus
Query      635  LAIGHGWEGRSWPPSPMPLTKRRSIHLSFRASPIGWY*GTNRPCFPIWTRNCVTCFLKGTQ*FAKNPHTGAMCF*S  862
                L I  G   R W P    LT+RR    S R S I W+*  +  C+ I   + V C L   + F ++  TGA   *S
Subject   2034  LEIASGLAMRFWRP*QTLLTRRRFTRRSSRGSLIVWH*RISHRCWHILITDYVRCSLSAMRLFVRSLTTGATLC*S  2261

Range 8: 2241 to 2507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 35/89(39%) 0/89(0%) Plus/Minus
Query      389  FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PTRKTVSKAPERVPSASPFPVASETHRT  655
                FSAS+       C  GSS  +L*    S PQYRR+    TS +   *N+   R*+ DDYS    +T   A E+ P + P   AS   RT
Subject   2241  FSASYPLHPARDCKHGSSHRRL*HGRSSFPQYRRTSR*RTSLRNRH*NTRGLR*QQDDYSSLNLRT*L*ALEKPPLSCPSLRAST*CRT  2507

Range 9: 2067 to 2204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 14/46(30%) 0/46(0%) Plus/Minus
Query      692  EKTCHTISCPNGKARPIGPSIPAYW*CSKRQMNRPPLG*GHWRRRP  829
                E+T H I   +       PS+P      +R  ++PP G*    R P
Subject   2067  ERTSHIICYQDVPTTMTDPSVPND*RSPRRPTSKPPPG*ERLLRTP  2204

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 4

Range 1: 1922 to 2743 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.9 bits(622) 0.0 121/274(44%) 0/274(0%) Minus/Plus
Query       12  ILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFF  833
                ++ASV+NALNQE+++  +VS+I NRLVL++ S L++HLD K+ ++F  ++  + +K      V L    KE L   FPEL I F +SV SSH   NA+RSCFN +++ +  GV F DIGGS  YHV+ G  +CH CNPVLD KD +RR  E L L+TA         +L + A+K+++YC  +++ CD +A  GFMVDVYD+   ++A+A++KK   +F+L LMFP+EL   +G + + EL   V R+GD + Y VG  G+ Y HS   +  FF
Subject   1922  LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSCFNSLYASKYRGVPFVDIGGSVAYHVRNGDKDCHCCNPVLDYKDCRRREEECLRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFF  2743

Range 2: 1688 to 1840 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 17/51(33%) 0/51(0%) Minus/Plus
Query      945  KGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHI  1097
                K WCW     L G       F S  SV  L RM   ++K  +    NI H+
Subject   1688  KYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVKLEKTDEANIFHV  1840

Range 3: 2479 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 31/75(41%) 0/75(0%) Plus/Minus
Query       52  SPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQ  276
                SP  PT+    SP   T+  SS     P    SS GNI+  SN    F S A A      S TST+KP  AL SQ
Subject   2479  SPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFISFFSSACANSKTSKS*TSTMKPTGAL*SQ  2703

Range 4: 2206 to 2352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 23/49(47%) 0/49(0%) Plus/Minus
Query      403  SLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMAL  549
                SL SRTGL   Q   P  T*   LPP+S   TP +L     LK  R AL
Subject   2206  SL*SRTGLQQ*QSLSPLRT**ATLPPMSTNGTPLYLLAYNELKHERTAL  2352

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 6

Range 1: 2463 to 3284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
275.5 bits(595) 0.0 112/274(41%) 0/274(0%) Minus/Plus
Query        9  LASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT  830
                +AS++ AL  E+V+  +VSS+ N++ L++ SA++  LD  +  +   +  ++  KPS   +  L   EK  L + FPEL ++F +SV SSHP  NA+R CFN +FS     + F DIGGS +YH+K G+VN H CNP +D KD KRR +E+L L            L +  ASK+ ++C ++++ C  + +AGFMVDVYD+S  +VA ++  KG   FD+  M PVEL+  +G   ++EL+T+V R+GD L Y+VG  G+ Y+HSF  V    T
Subject   2463  MASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPSVTINPSLTTTEKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMCFNALFSHNYKDIPFVDIGGSISYHIKHGNVNAHCCNPTVDAKDAKRRESELLTLRRESYGDATIQQLSSSVASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLT  3284

Range 2: 2708 to 2899 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 30/64(47%) 0/64(0%) Plus/Minus
Query      394  RFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALADG*LLLTDSEN  585
                RF SL S  GL    FT+P L *   LPPIS       L EK  LK +  AL  G*L  T S N
Subject   2708  RFASLASTVGLQQ*AFTFPCLI**DMLPPISTNGMSL*L*EKRALKHILTALHIG*LEKTLSLN  2899

Range 3: 2975 to 3145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 24/57(42%) 0/57(0%) Plus/Minus
Query      148  SSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEA  318
                SSTG+I+  S    P ++   AT     SYTSTI PAS    Q   S +Q    FEA
Subject   2975  SSTGSIKTMSKVLTPLIAKLRATSYELRSYTSTINPASHFLVQHLVSFMQKVAVFEA  3145

Range 4: 3176 to 3286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 17/37(46%) 0/37(0%) Plus/Minus
Query        7  KVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSS  117
                +V+   T  KEC Y SP  PTL*   SP   T V +S
Subject   3176  QVRREKTF*KECWYESPVPPTL*VSRSPLRVTTVFNS  3286

Range 5: 2694 to 2897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 22/68(32%) 0/68(0%) Plus/Minus
Query      396  LHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSGWMTTPDRLGKLYRKL  599
                L +F V  WV  +++H+   ++I  A   I E        K+ VET P+ V+  MT  D + KL  +L
Subject   2694  LRVFGVHCWVTTMSIHIPVLDMIGYASSYIHEWDVLIIVRKEGVETHPYCVTHRMTREDTVLKLQFQL  2897

Range 6: 3042 to 3260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 18/73(25%) 0/73(0%) Plus/Minus
Query       33  EGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHK  251
                +G+ + ++  ++ + + I    +  ++FL     V+    +G+HK  +E        +  HL+   IVHIHHK
Subject   3042  KGVLV*ISRSSHTISEQIPLTRYNGVQFLNSVRPVSSY*FYGKHKDDVEGSHPFNSQTPSHLI*AQIVHIHHK  3260

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 3

Range 1: 1080 to 1379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 35/100(35%) 0/100(0%) Minus/Plus
Query        9  SVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT  308
                SVS CS   + C   A + +MVDVYDIS   + + MDK   +  ++AL+ P EL+  +GEV ++ L+T+V+ +   + Y +G  G+ Y H    +  + T
Subject   1080  SVSSCSARFEECSHPAFSAYMVDVYDISLLSLVDGMDKHKTVFTNVALILPAELIEESGEVDIQSLNTVVRWDHSTVTYFIGNTGDSYMHCRQTLVQYLT  1379

Range 2: 567 to 872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 28/102(27%) 0/102(0%) Minus/Plus
Query      516  VANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIF  821
                + + LN E +Y  ++  +T+RL  ++ S L  H+D+ L  +  +++ ++  K        +    +  L   FPEL I+++ S RS HP    +R+ FN +F
Subject    567  LVSCLNLETMYGELLKQVTSRLNFKENSDLFLHVDSSLKTLLKEKEDVLSHKFQCSISANIDQDARSILDSAFPELQIKYTTSSRSEHPMCYCVRTAFNALF  872

Range 3: 903 to 1010 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 19/36(53%) 0/36(0%) Minus/Plus
Query      378  DIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEI  485
                DIGG    H K GH N H CNP L  KDV RR+ ++
Subject    903  DIGGCPQAHRKMGHSNVHTCNPTLSGKDVTRRVADL  1010

Nucleotide Sequence (822 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
83
166
249
332
415
498
581
664
747
822

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
617.4 3042.3 22% 5.163e-176 75% NC_004667
328.9 463.1 37% 3.812e-89 36% NC_022072
214.0 214.0 32% 1.463e-54 35% NC_016509
145.1 176.3 21% 3.225e-37 38% NC_029783
119.1 145.3 17% 5.445e-28 42% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 13

Range 1: 10833 to 11651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
617.4 bits(1348) 0.0 264/273(97%) 0/273(0%) Plus/Plus
Query        3  AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPKETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSN  821
                AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVE VDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFD+TDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV  QPVVIFPKGSPIPCSYTHRYTVG GDVVYGIFEGENNRAFLNEPTFRGVSKRRGDP ETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTR+NL N
Subject  10833  AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRRNLGN  11651

Range 2: 11264 to 11650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
283.3 bits(612) 0.0 123/129(95%) 0/129(0%) Minus/Minus
Query      434  LLRFFLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVDKLNCATSVSFGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPLPTVYL*VYEQGIGLPFGKI  820
                L RF LVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSV++LNCATSVS GSPLRFDTPRNVGSFRKALLFSPSNIPYTTSP PTVYL*VYEQGIGLPFGKI
Subject  11264  LPRFLLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI  11650

Range 3: 10833 to 11033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.9 bits(323) 0.0 60/67(90%) 0/67(0%) Minus/Minus
Query        3  RVWIKVVKTGFEHFHSPSAEWRNNCV*FVASQIHILHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG  203
                RVW+KVVKT FE+FHSPSAEW N+CV FVASQIH LHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG
Subject  10833  RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG  11033

Range 4: 11073 to 11291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.9 bits(310) 0.0 59/73(81%) 0/73(0%) Minus/Minus
Query      243  GYWTTFRENYHRLKVHHLVR*RIRQSVHQSQSAITCQNITVNLSPTGYRTPKISIVEHNLRYLRQIGYITPDL  461
                GYWTTFRENYHRLK H+LVR*RIR SVHQSQSAITCQ+I VNLSPT +RT KI  VEH+ RYLRQI +ITPDL
Subject  11073  GYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDL  11291

Range 5: 10831 to 11652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
489.1 bits(1061) 0.0 233/274(85%) 0/274(0%) Minus/Minus
Query        1  CYSGFSS*KPYRAKYSVWSSTLVLP*PLNLLSRIYRPTNLVRLLSRVPDIHSLLPHR*Q*QIPYRLWIN*IALRRSLLGLPYVSIRPGTSVHLEKPCYSPLQIYRTPHLHYPLCICECMNRVLDYLSGKLXXXXXXXXXPLAYSSKCPPVSVRYYLPKYHSKP*PHRLPNT*NQYCRTQP*ISAANWLHHS*P*LEHLTPQS*QQ*QGLDKSCQDRF*TLPQP*R*MAQQLRLVRR*SNXXXXXXXLRG*GVAL*RYC*TSLPSSRIRISLTWH  822
                CY GFSS*KPYRAKYSVWSSTLVLP*PLNLLS+IYRP N VRLLSRVPDIHSLLPH *+*Q P+R W +* A RRSLLGLPYVSIRPGTS HLEK CYSPLQIYR PHLH+PLCI E MNRVLDYLSGKLPP E P PRPLAYS KCPPVSVRYYLPKY SKP*PH+ PN *N+YCRT+ *ISAAN  HHS*P*LEHLTPQS*+Q* GL KSCQD+F* LPQP*R*M Q+LR VRR*SNP PPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH
Subject  10831  CYPGFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P*LEHLTPQS*RQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH  11652

Range 6: 10961 to 11644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
409.8 bits(888) 0.0 190/228(83%) 0/228(0%) Plus/Plus
Query      131  NCCAIQR*GCGSVQNRS*QLLSRPCYCCYDWGVKCSS*GQE*CSQFAADI*GCVRQY*F*VFGSLWG*GLL*YFGR**RTETGGHFDEYANXXXXXXXXXXNFPER*SNTLFIHSQIHSG*WRCGVRYI*RGE*QGFSK*TDVPGRIET*GRPKRDRRSAI*FIHRRYGICYC*R*GSKE*ISGTRDNKRTRFVGL*IRERRFRG*GNTRVLDHTEYFAR*GFHEEKP  814
                N C IQR*GCGS+QN S*QLL RP YC YDWGVKCSS*GQE*C  FAADI*  VRQY F*+FG LWG*GLL YFGR**RTETGGHF+EYANGRG G S GGNFPER*SNTLFI+S IHSG WRCG+RYI*RGE*Q FSK* DVPGRIET*GRP RDRR A+* +H R G+CY * *GSKE*ISGTRDNKRT F+GL*I ERRFRG*GNTRVLDHTEYFAR*GFHEEKP
Subject  10961  NRCTIQR*GCGSIQNWS*QLLPRPGYCRYDWGVKCSS*GQE*CG*FAADI*SRVRQYRF*MFGGLWG*GLLRYFGR**RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKP  11644

Range 7: 10832 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 26/26(100%) 0/26(0%) Plus/Plus
Query        2  CQVRDIRILDEGRLV*Q*RYNATPYP  79
                CQVRDIRILDEGRLV*Q*RYNATPYP
Subject  10832  CQVRDIRILDEGRLV*Q*RYNATPYP  10909

Range 8: 11266 to 11652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 110/129(85%) 0/129(0%) Plus/Plus
Query      436  FSRKVVQYPVHTLTDTQWVVEMWCTVYLKGRITGLF*MNRRSGAYRNVGETQKRPT*RNLIYPQTVRYLLLLTVRK*RMNIWYPGQQTY*IRWSINPGEKI*RLRQYQST*PH*IFCTIRLSRGKT*VT  822
                FSRKVVQYPVH L DTQWVVEMW TVYLKGRIT LF*M+RRSGAYRNVGETQ RPT R+LI P+T R LL L VRK*RMNIWYPGQQTY I WSIN GEKI*RLRQYQST*PH*IFCTIRLSRG+T VT
Subject  11266  FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRGETWVT  11652

Range 9: 10831 to 11031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 60/67(90%) 0/67(0%) Plus/Plus
Query        1  MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRMWI*LATN*TQLLRHSALGLWKCSKPVLTTFIQT  201
                MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWR+WI*LATN TQ L HSALGLWK SK VLTTF QT
Subject  10831  MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSKLVLTTFTQT  11031

Range 10: 11074 to 11205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 33/44(75%) 0/44(0%) Plus/Plus
Query      244  RSGVM*PICRRYLRLCSTILILGVR*PVGLRFTVIFWQVIAD*D  375
                RSGVM  ICRRYL+ CST+ IL VR  VGLRFT I WQVIAD*D
Subject  11074  RSGVMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*D  11205

Range 11: 11343 to 11651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 89/103(86%) 0/103(0%) Minus/Minus
Query      513  VTQVFPRESLIVQNIQCGQVLWYCLSL*IFSPGFIDQRI*YVCCPGYQIFILYFLTVNNNRYRTVCG*IKLRYVGLFWVSPTFRYAPERRFI*KSPVILPFKY  821
                VTQV PRESLIVQNIQCGQVLWYCLSL*IFSP FIDQ I YVCCPGYQIFILYFLT+N+NR+R+V G IKLR+VGL+WVSPTFRYAPERR I*KS VILPFKY
Subject  11343  VTQVSPRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKY  11651

Range 12: 10958 to 11197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 79/80(99%) 0/80(0%) Minus/Minus
Query      128  PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXLDPPVITAITGSG*KLSRPVLNTSTALALNGATIA  367
                PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA
Subject  10958  PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA  11197

Range 13: 10832 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 26/26(100%) 0/26(0%) Minus/Minus
Query        2  GIRCCVIALLLDKSSFIEDTNIPNLA  79
                GIRCCVIALLLDKSSFIEDTNIPNLA
Subject  10832  GIRCCVIALLLDKSSFIEDTNIPNLA  10909

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 4

Range 1: 11804 to 12583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
328.9 bits(715) 0.0 134/260(52%) 0/260(0%) Plus/Plus
Query        6  KLGIFVSSMKEDLSNNNAITQHLIPVEGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPKETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNIL  785
                KL  FVS++KED+SN+ ++  H++P   G E V LT  EL  +VAPF+ +AV++F   ++ F PD  +AV+TGGSSALV+VR  +A LP ++ VV+D  DFRCSVACGAKVYCD L G   LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT  Y+V + +VVYG++EGE NR++LNE TFR   +     K TD  +++LS DGT+SV +NG+   NE+     +NV+ S  Y +GRED + + + EY   LN +
Subject  11804  KLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAELTEVVAPFAKKAVKIFSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGREDTQKEGVGEYCALLNAI  12583

Range 2: 11932 to 12159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 41/76(54%) 0/76(0%) Minus/Minus
Query      134  LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXLDPPVITAITGSG*KLSRPVLNTSTALALNGAT  361
                LP K SQ T AP ATEHLKS  S TTL   G  A   LT T+AL+PPV TA   SG  LS       TA   NGAT
Subject  11932  LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSGRNLSIASEKIFTAFLANGAT  12159

Range 3: 12235 to 12357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 23/41(56%) 0/41(0%) Minus/Minus
Query      437  NVGSFRKALLFSPSNIPYTTSPLPTVYL*VYEQGIGLPFGK  559
                NV S R    FSPS  PYTT  + T    VYEQGIG P GK
Subject  12235  NVSSLR*LRFFSPSYTPYTTLAVLTE*DVVYEQGIGFPLGK  12357

Range 4: 12394 to 12576 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 22/61(36%) 0/61(0%) Minus/Minus
Query      596  FSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVDKLNCATSV  778
                F+  +YS       SSLP  *  + +TF       S   S PL +T +VPS DK     SV
Subject  12394  FNNAQYSPTPSFCVSSLPVE*DFDFTTFEGRVVLNSLTPSLPLIVTLSVPSSDKSYLTVSV  12576

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 10624 to 11403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.0 bits(463) 0.0 91/260(35%) 0/260(0%) Plus/Plus
Query        9  LGIFVSSMKEDLSNNNAITQHLIPVEGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPKETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILH  788
                L + ++ +KE +  N       +    G+E + ++ DEL+A+  PF  RA+++F  G +     P++ V+TGGS AL  V+  +  LP +S+  +D+  FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+  F  +VIFPKG PIP  Y   + +    + YGI EGE+NR +LNE  F+G   R  + +++D  ++ +S DG + + V+G ++KN  L    +    +  Y S  +    +    Y+   + LH
Subject  10624  LAVMIADLKEKICVNGGTQYTQVKTSNGLETLSMSVDELNAVSEPFVDRAIKIFAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRLPAPVSASAHAYRYVSSMKKYLIQLENNYVDMFSELH  11403

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 11114 to 11602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.1 bits(312) 0.0 62/163(38%) 0/163(0%) Plus/Plus
Query       84  EGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVS  572
                +G  +    T D+L +   PF  RAV++F   + +    P   V+TGGS+AL  + +   ++  ++ V+++   FR SVA GAK+Y D+L   S L L+D+L+ TL+D++  F+  ++FPKG+ IP ++   YTVG  +V YG++EGE N  +LN+ TF+GV+
Subject  11114  DGSRQIASYTLDQLISDSGPFLDRAVQMFSRLVRDLANPPTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA  11602

Range 2: 11042 to 11131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.2 bits(62) 0.0 13/30(43%) 0/30(0%) Plus/Plus
Query       15  IFVSSMKEDLSNNNAITQHLIPVEGGVEDV  104
                I VS MKE +S+  A T+ +IP+E G   +
Subject  11042  IIVSKMKEIVSDTLATTEQIIPLEDGSRQI  11131

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 10273 to 10629 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.1 bits(255) 0.0 53/119(45%) 0/119(0%) Plus/Plus
Query      204  VIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTF  560
                V  VM GGSSA+  +R  VA    + +VVFDN  FR +VA GAKVY D L  N GL LVDTL++ + DE+V  +  V+  KG  +P +    Y    G++   ++EGE+  AF+NEPT+
Subject  10273  VNVVMVGGSSAIPLLRDAVATCRGVKRVVFDNNTFRIAVAVGAKVYSDSLVSNKGLVLVDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPTY  10629

Range 2: 10681 to 10752 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.1 bits(51) 0.0 10/24(42%) 0/24(0%) Plus/Plus
Query      618  LSTDGTVSVIVNGEEVKNEYLVPG  689
                L  DG++ V V G+++KN++L  G
Subject  10681  LRRDGSLVVSVFGKQIKNKFLPKG  10752

Nucleotide Sequence (657 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
66
132
198
264
330
396
462
528
594
657

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
387.8 2730.7 75% 5.214e-107 78% NC_004667
83.1 83.1 18% 2.777e-15 29% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 14

Range 1: 14423 to 14947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
387.8 bits(840) 0.0 162/175(93%) 0/175(0%) Plus/Plus
Query        5  RADFPGTQSLSVTLSIASNKLASGLMGNDAESSSFMLMNDAGDYFECGVCHNKPYLGREVIFCRKYLGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFKGFNKISLKKT  529
                RADFP TQSLSVTLSIASNKLASGLMG+DA SSSFMLMND GDYFECGVCHNKPYLGREVIFCRKY+GGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFF+      LKK+
Subject  14423  RADFPNTQSLSVTLSIASNKLASGLMGSDAVSSSFMLMNDVGDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKKS  14947

Range 2: 14421 to 14915 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
375.9 bits(814) 0.0 161/165(98%) 0/165(0%) Minus/Minus
Query        3  *RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHLSISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*DLKLTYYWLSIT*LISFEFRESLLY  497
                *RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHL ISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*DLKLTYYWLSIT*LISFE+ ESLL+
Subject  14421  *RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*DLKLTYYWLSIT*LISFEYWESLLF  14915

Range 3: 14419 to 14943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
364.4 bits(789) 0.0 163/175(93%) 0/175(0%) Minus/Minus
Query        1  FFRDILLKPLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPKYFLQKITSRPK*GLL*HTPHSK*SPASFISINDDDSASFPIRPEANLLLAIDNVTDKL*VPGKSALC  525
                FF+      LKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPP YFLQKITSRPK*GLL*HTPHSK*SP SFISINDDD+AS PIRPEANLLLAIDNVTDKL*V GKSALC
Subject  14419  FFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SPTSFISINDDDTASLPIRPEANLLLAIDNVTDKL*VLGKSALC  14943

Range 4: 14420 to 14914 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
333.3 bits(721) 0.0 158/165(96%) 0/165(0%) Minus/Minus
Query        2  EEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYXXXXXXXXXXXXLTSGDLHSSPT*VFPTEDNFPS*VGFVVTHAALEVISRVVHQHKRR*FCVVSHKT*S*LITGYR*RN**ALSSGKVCSM  496
                +EDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPT VFPTEDNFPS*VGFVVTHAALEVIS VVHQHKRR*+CV SHKT*S*LITGYR*RN**ALS GKVCS+
Subject  14420  KEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVISHVVHQHKRR*YCVASHKT*S*LITGYR*RN**ALSIGKVCSL  14914

Range 5: 14593 to 14913 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 106/107(99%) 0/107(0%) Plus/Plus
Query      175  TGSYLL*EILRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL  495
                TGSYLL*EI RWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL
Subject  14593  TGSYLL*EIHRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL  14913

Range 6: 14419 to 14538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 36/40(90%) 0/40(0%) Plus/Plus
Query        1  T*SRLSRNSKLISYVIDSQ**VSFRSYGKRRRIIVVYADE  120
                T SRLS+ SKLISYVIDSQ**VSFRSYGKRR IIVVYADE
Subject  14419  TKSRLSQYSKLISYVIDSQ**VSFRSYGKRRSIIVVYADE  14538

Range 7: 14424 to 14654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
163.7 bits(351) 0.0 73/77(95%) 0/77(0%) Plus/Plus
Query        6  EQTFPELKAYQLRYR*PVIS*LQVLWETTQNHRRLC**TTREITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV  236
                EQTFP LKAYQLRYR*PVIS*LQVLWE TQ HRRLC**TT EITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV
Subject  14424  EQTFPILKAYQLRYR*PVIS*LQVLWEATQYHRRLC**TTWEITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV  14654

Range 8: 14709 to 14951 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 72/81(89%) 0/81(0%) Plus/Plus
Query      291  *SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSSKVSIRYP*RRRA  533
                *SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASS  +S    *R R+
Subject  14709  *SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*RNRS  14951

Range 9: 14777 to 14941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 47/55(85%) 0/55(0%) Plus/Minus
Query      493  LQRFQ*DIPKEDAHWGN*Q*PYTHYTQFRD*ETTNTEHPIYGH*LR*FVDTRPIF  657
                LQRFQ*DIPKEDAHWGN*Q*PYTHYTQFR *ETT  E  IYGH L  FVDTRPIF
Subject  14777  LQRFQ*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIF  14941

Range 10: 14777 to 14944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 45/56(80%) 0/56(0%) Minus/Plus
Query      490  KYWTCIYKLTQLVSVDRMLCIGCFSVSKLGVMRIRSLLVSPVRVFFRDILLKPLKK  657
                K WT IYK+T++VSVD+ L  GCFS SKLGVMRIRSLLVSPVR+FFRDILLKPLKK
Subject  14777  KNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKK  14944

Range 11: 14781 to 14942 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 46/54(85%) 0/54(0%) Plus/Minus
Query      492  SSKVSIRYP*RRRALGKLTVTLYALHPVSRLRNNQYRASDLRTLTALICRYTSN  653
                SSKVSIRYP*RR ALGKLTVTLYALHPVS LRNNQ R SDLRTL+ L CRY SN
Subject  14781  SSKVSIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASN  14942

Range 12: 14781 to 14942 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 47/54(87%) 0/54(0%) Minus/Plus
Query      492  IGRVSTN*RS*CP*IGCSVLVVSQSRNWV*CV*GHC*FPQCASSLGISY*NL*R  653
                IGRVST *+ *CP*I  S LVVSQ+RNWV*CV*GHC*FPQCASSLGISY*NL*R
Subject  14781  IGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*R  14942

Range 13: 14782 to 14943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 45/54(83%) 0/54(0%) Minus/Plus
Query      491  LDVYLQINAVSVRRSDALYWLFLSLETGCNAYKVTVSFPSARLL*GYLIETFEE  652
                LD YLQ N  SVRRS+ L WLFL LETGCNAYKVTVSFPSA LL*GYLIETFEE
Subject  14782  LDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIETFEE  14943

Range 14: 14779 to 14943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 43/55(78%) 0/55(0%) Plus/Minus
Query      491  FFKGFNKISLKKTRTGETNSDLIRITPSFETEKQPIQSIRSTDTNCVNL*IHVQY  655
                FFKGFNKISLKK RTGETNSDLIRITPSFE+EKQP     STDT  V L*I VQ+
Subject  14779  FFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQF  14943

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 15397 to 15759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 35/121(29%) 0/121(0%) Plus/Plus
Query       77  LMGNDAESSSFMLMNDAGDYFECGVCHNKPYLGREVIFCRKYLGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDS  439
                L   ++ S     +  +G + E  + HN PY+ RE I  R+Y G    E+ TG+N+T N+W+E+ Y ++++V        VN+ +  +D++G+ +    I       +VD   +PG + DS
Subject  15397  LQSGESLSCRIRFLAASGKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPGKYDDS  15759

Nucleotide Sequence (345 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
345

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
220.1 1170.6 24% 6.341e-57 79% NC_004667
51.5 51.5 29% 3.648e-06 30% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 14546 to 14884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.1 bits(474) 0.0 99/113(88%) 0/113(0%) Minus/Plus
Query        2  GDYFECGVCHNKPYLGREVVFCRKYIGGRGVEITTGKXXXXXXXXXXXYVLHVDIVGGAAQTSVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSSPKLNVMLIRS  340
                GDYFECGVCHNKPYLGREV+FCRKYIGGRGVEITTGKNY+SNNWNE+SYV+ V++V G AQT+VNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFS  KL VM IRS
Subject  14546  GDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRS  14884

Range 2: 14545 to 14883 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 99/113(88%) 0/113(0%) Plus/Minus
Query        3  DLISITFSFGLEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTEVCAAPPTISTCNTYDDSFQLFDE*FLPVVISTPLPPMYFLQKTTSRPKYGLL*HTPHSK*SP  341
                DLI IT SF  EKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELT VCA P T  TC TYD SFQLFD *FLPVVISTPLPPMYFLQK TSRPK GLL*HTPHSK*SP
Subject  14545  DLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SP  14883

Range 3: 14546 to 14884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 97/113(86%) 0/113(0%) Plus/Minus
Query        2  *PYKHYIQFRA*ETTRVEVLIYGHYLRYLVDTRPVFG*TTNVRLRISRIN*GLCRPTDYIHM*YXXXXXXXXXXXXXTSGDLHSSPTYVFPTEDDFPS*VRFVMTHAALEVIS  340
                *PY HY QFR *ETTRVEVLIYGHYL Y VDTRP+FG*TTNVRLRISRIN GLC P DY+H+ YVRRLVP+VRRVVLTSGDLHSSPTYVFPTED+FPS*V FV+THAALEVIS
Subject  14546  *PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVIS  14884

Range 4: 14541 to 14885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 95/115(83%) 0/115(0%) Plus/Minus
Query        1  VTL*ALHSVSGLRNNQGRGSDLRTLSSLSCRYASSFWVDH*RPFAYK*N*LRSVPPHRLYPHVIXXXXXXXXXXXXXYQW*SPLLSHLCISYRRRLPVLSTVCYDTRRTRSNLPR  345
                VTL ALH VS LRNNQGRGSDLRTLS L CRYAS+FWVDH*RPFAYK*N*  SV  HRL   V+RTT RS+CST SSYQW*SPLLSHLCISYRR LPVLS VC DTRRTRSNLPR
Subject  14541  VTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPR  14885

Range 5: 14710 to 14883 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.7 bits(257) 0.0 49/58(84%) 0/58(0%) Minus/Plus
Query        3  SRWGGTDLS*FYLYANGR*WSTQKLDAYLQDNEDSVRRSEPLPWLFLKPETECNAYKV  176
                SRW  TD  *FYLYANGR*WSTQKLDAYLQ+N+DSVRRSEPLPWLFL+ ET CNAYKV
Subject  14710  SRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKV  14883

Range 6: 14541 to 14654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 34/38(89%) 0/38(0%) Minus/Plus
Query      232  TREITSSAACVITNRT*DGKSSSVGNT*VGEEWRSPLV  345
                T EITSSAACV TN T*DGK SSVGNT*VGEEWRSPLV
Subject  14541  TWEITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV  14654

Range 7: 14697 to 14885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 50/63(79%) 0/63(0%) Minus/Plus
Query        1  YMWI*SVGRHRPQLILLIRKRTLVVYPKTGRVSTR*RR*CP*IRTSTLVVSQARN*M*CL*GH  189
                Y   *S+G HRP LILLIRKRTLVVYPK GRVST+*+R*CP*IRTSTLVVSQ RN +*C+*GH
Subject  14697  YK*T*SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GH  14885

Range 8: 14593 to 14652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 19/20(95%) 0/20(0%) Minus/Plus
Query      234  TGSRLL*EIHRWERSGDHHW  293
                TGS LL*EIHRWERSGDHHW
Subject  14593  TGSYLL*EIHRWERSGDHHW  14652

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 15445 to 15744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 30/100(30%) 0/100(0%) Minus/Plus
Query       44  AGDYFECGVCHNKPYLGREVVFCRKYIGGRGVEITTGKXXXXXXXXXXXYVLHVDIVGGAAQTSVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPG  343
                +G + E  + HN PY+ RE +  R+Y G    E+ TG+N++ N+W+ES Y L + +        VN+ +  +D++G+ +    I       +VD   +PG
Subject  15445  SGKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPG  15744

Nucleotide Sequence (449 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
45
90
135
180
225
270
315
360
405
449

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
310.8 1825.0 31% 4.67e-84 98% NC_004667
57.0 57.0 26% 1.216e-07 24% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 12167 to 12571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
310.8 bits(672) 0.0 132/135(98%) 0/135(0%) Minus/Plus
Query        7  FR*GSMWT*RRI*KVRSCR*KLWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC*YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTLP  411
                FR*GSMWT*RRI*KVRSCR*+LWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRT P
Subject  12167  FR*GSMWT*RRI*KVRSCR*ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHP  12571

Range 2: 12169 to 12570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
308.1 bits(666) 0.0 131/134(98%) 0/134(0%) Plus/Minus
Query        8  GSVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY*QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNF*RHDRTF*ILRYVHILPYL  409
                G VLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHN *RHDRTF*ILRYVHILPYL
Subject  12169  GCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPYQQIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPYL  12570

Range 3: 12178 to 12576 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
308.1 bits(666) 0.0 131/133(98%) 0/133(0%) Minus/Plus
Query        2  KYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGG  400
                KYVDVTQNLESTIVPL+VMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYD+RVAWVYDVIATLKLVIRLFFNKDTPGG
Subject  12178  KYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGG  12576

Range 4: 12165 to 12572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
307.6 bits(665) 0.0 133/136(98%) 0/136(0%) Minus/Plus
Query        6  GSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISASTETTSKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHSR  413
                GSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISA TETTSKFFLR KSSLGI*RDRYAQAGHKIVFQQGH+R
Subject  12165  GSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTR  12572

Range 5: 12177 to 12575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.1 bits(642) 0.0 131/133(98%) 0/133(0%) Plus/Minus
Query        3  PPGVSLLKNNLMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITFNGTIVLSKFCVTSTYF  401
                PPGVSLLKNNLMTSLSVAITSYTQATL S*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISIT NGTIVLSKFCVTSTYF
Subject  12177  PPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYF  12575

Range 6: 12164 to 12571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
293.4 bits(634) 0.0 133/136(98%) 0/136(0%) Plus/Minus
Query        7  RECPC*KTIL*PA*A*RSRHIPKLLLCRRKNLLVVSVLADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEP  414
                R CPC*KTIL*PA*A*RSRHIPKLLL RRKNLLVVSV ADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEP
Subject  12164  RVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEP  12571

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 13169 to 13516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 28/116(24%) 0/116(0%) Minus/Plus
Query       17  IVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNK  364
                +VPL  + ++KR        P VV +++  Y ++ + L D+    R   +  Y  + +A++  +  +     ++   +   L+R +P N +YD RVAW   V + L   I   F +
Subject  13169  VVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGR  13516

Nucleotide Sequence (786 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
79
158
237
316
395
474
553
632
711
786

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
307.6 1717.0 22% 4.29e-83 50% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 10

Range 1: 16686 to 17093 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
307.6 bits(665) 0.0 134/136(99%) 0/136(0%) Plus/Minus
Query        2  NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LHKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVSAVVRFHLLVYLRKLASRNLRTPILDSPQTKY  409
                NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**L KPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLV AVVRFHLLVYLRKLASRNLRTPILDSPQTKY
Subject  16686  NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKY  17093

Range 2: 16040 to 16117 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 13/26(50%) 0/26(0%) Plus/Minus
Query      390  ILPRQNIQISVFACPSPKNVQKRSAR  467
                +L + +  ISV ACPSPK V +  AR
Subject  16040  LLVKTSKNISVSACPSPKYVSR*PAR  16117

Range 3: 16685 to 17092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.0 bits(583) 0.0 132/136(97%) 0/136(0%) Plus/Minus
Query        3  MFKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYISLHDVNLSLRIVYRCPXXXXXXXXXXXXXXXKCCHVIIVQGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNI  410
                M KQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSY+SLHDVNLSLRIVYRCPARRIINAIIRVNQ+VKCCHVIIV+GGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNI
Subject  16685  MSKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNI  17092

Range 4: 16688 to 17092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
268.7 bits(580) 0.0 132/135(98%) 0/135(0%) Minus/Plus
Query        3  ILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEXXXXXXXXXXXXXTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKH  407
                ILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLL+H
Subject  16688  ILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLRH  17092

Range 5: 16041 to 16097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 12/19(63%) 0/19(0%) Minus/Plus
Query      410  RAERF*TFLGDGQANTDIW  466
                RA    T+LGDGQA+TDI+
Subject  16041  RAGYLETYLGDGQADTDIF  16097

Range 6: 16687 to 17094 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.7 bits(567) 0.0 134/136(99%) 0/136(0%) Minus/Plus
Query        1  YFVWGESRIGVRRFLEASLXXXXXXXXXXTALTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLCSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF  408
                YFVWGESRIGVRRFLEASLRR*TRRWKRTTA TNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGL SYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF
Subject  16687  YFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF  17094

Range 7: 16687 to 16944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.4 bits(431) 0.0 83/86(97%) 0/86(0%) Plus/Minus
Query      151  CGSFIAAQRVVSSTLLYALIKM*SAVTSLLYKAERICTIINDRSMML*PRDEISKCCSTFPPPCLPTQTSFKESTHPNPRFSPDKI  408
                CGSFIAAQRVVSSTLLYALIK+*SAVTSLLY+AERICTIINDRSMML*PRDEIS+CCSTFPPPCLPTQTSFKESTHPNPRFSPDKI
Subject  16687  CGSFIAAQRVVSSTLLYALIKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKI  16944

Range 8: 16999 to 17094 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 32/32(100%) 0/32(0%) Plus/Minus
Query        1  ECLSKPLAMPTKHPTWS*AKAESILSMRIVLC  96
                ECLSKPLAMPTKHPTWS*AKAESILSMRIVLC
Subject  16999  ECLSKPLAMPTKHPTWS*AKAESILSMRIVLC  17094

Range 9: 16686 to 16940 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 83/85(98%) 0/85(0%) Minus/Plus
Query      155  IFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPCTIMT*QHFTF*LTRIIALMIRRAGQR*TI  409
                IFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPP TIMT*QHFT *LTRIIALMIRRAGQR*TI
Subject  16686  IFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFTL*LTRIIALMIRRAGQR*TI  16940

Range 10: 16995 to 17093 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 32/33(97%) 0/33(0%) Minus/Plus
Query        2  SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCLNI  100
                SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCL+I
Subject  16995  SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDI  17093

Nucleotide Sequence (769 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
77
154
231
308
385
462
539
616
693
769

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
505.6 2290.9 23% 2.273e-142 72% NC_004667
89.0 89.0 16% 5.483e-17 30% NC_029783
60.2 110.7 15% 8.8e-18 33% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 417 to 1157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
505.6 bits(1097) 0.0 221/247(89%) 0/247(0%) Plus/Plus
Query       29  GCVWVVRGDGKKVLMEARXXXXXXXXXXXXXXXFEAVTHALIVVHYHRVVPFTPVKREQPKRAVKQDEQKPKRQASQWAVKPTAVGVHVPLPNKQEAPKPAQSVPQQSLEEKATLTFGLFFSKGGGDESGGVILRKGKLFNRALNVPINVKNTFVWAKIWDEASRRRGYFYVKDSIVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFS  769
                G V  +RGDGKKVLMEARTSTSA SD S +D VFEAV++AL+VVHYHRVVP+ PVKREQPK AVKQDEQKPKRQAS WAVKPTAVGVHVPLP KQEA +PAQSVPQQSLEEKA LTFGLFFSKGGGDES  VILRKGKLFNRALNVPI+VKNTFVWAKIWDEASRRRGYFYVKD  VKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFV TTKGWCWFNNERLRGEIYRRRCFSSSFS
Subject    417  GSVSALRGDGKKVLMEARTSTSATSDVSDFDVVFEAVSNALLVVHYHRVVPYAPVKREQPKPAVKQDEQKPKRQASHWAVKPTAVGVHVPLPKKQEALEPAQSVPQQSLEEKAALTFGLFFSKGGGDESDAVILRKGKLFNRALNVPIDVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFS  1157

Range 2: 416 to 1156 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
452.4 bits(981) 0.0 216/247(87%) 0/247(0%) Minus/Minus
Query       28  EKEDEKQRRXXXXXXXXXXLNQHHPLVVLTNALSRMLHNSIRGKATSHPGAVFTMKSSIVALPRTIGKNLTMLSLT*KYPLLREASSQILAQTKVFLTLIGTLRALLNNFPFRKMTXXXXXXXXXLKKRPNVRVAFSSNDCCGTDCAGFGASCLFGSGTWTPTAVGLTAHCDACRLGFCSSCLTARLGCSRLTGVNGTTRW*CTTINACVTASNTAS*LDASETAEVEVLASIKTFLPSPLTTQTHP  768
                EKEDEKQRRL*ISPLSLSLLNQHHPLVV TNALSR+LHNS+RGKATSHPGAVFTMKSSIVALPRTIGKNLT LSLT*KYPLLREASSQILAQT VF T IGTLRALLNNFPFRKMT  LSSPPPLLKKRPNV+ AFSSNDCCGTDCAG  ASC  GSGTWTPTAVGLTA CDACRLGFCSSCLTA LGCSRLTG  GTTRW*CTT NA  TASNT S  D SE AEVEVLASIKTFLPSPL+  T P
Subject    416  EKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILAQTNVFFTSIGTLRALLNNFPFRKMTASLSSPPPLLKKRPNVKAAFSSNDCCGTDCAGSSASCFLGSGTWTPTAVGLTAQCDACRLGFCSSCLTAGLGCSRLTGAYGTTRW*CTTSNALETASNTTSKSDTSEVAEVEVLASIKTFLPSPLSALTEP  1156

Range 3: 753 to 1157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.7 bits(543) 0.0 100/135(74%) 0/135(0%) Minus/Minus
Query      365  RKGR*EATTSVNFSPQPLIVKPTPPFGSAHERPFAHAPQLYTW*GNITPWGRIHNEIFNCSPTPHDREELNNAILDIKISSPTRGFIPNFGPNKGVLNIDRNVKSPVEQLPFPQDDAAALIAPTFTEEKAKRQSG  769
                RKGR*EATTSVNFSPQPLIVKPTPPFG A++RPFAH PQL    GNITPWG IH+E+ + SPTPH+REE N++I D+KI SPTRGFIP+F PN+ VL I+RN+K PV+Q PFPQDD+ ALI PTFTEEKAKRQ G
Subject    753  RKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSPNERVLYINRNIKGPVKQFPFPQDDSVALITPTFTEEKAKRQGG  1157

Range 4: 438 to 692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 61/85(72%) 0/85(0%) Minus/Minus
Query       50  RKWYMDANSCWLNSPXXXXXXXXXXXLFDSPFRLLALDRGKRHYPVVVYNNQRMCYSFKHGVVTRRVGNCRS*GPRLHQNLLTIP  304
                RKWY+DANSCWLNSP+*RLPFGLLLIL +S FRLLALD G RHYPVVVY+   +  SF++ V  R VG+C S*GP LHQ+LLTIP
Subject    438  RKWYVDANSCWLNSPM*RLPFGLLLILLNSRFRLLALDGGIRHYPVVVYDK*CIRNSFEYDVEIRHVGSCGS*GPCLHQDLLTIP  692

Range 5: 532 to 1155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
334.6 bits(724) 0.0 160/208(77%) 0/208(0%) Minus/Minus
Query      144  KRKMRSNDVCKFLPSASHC*TNTTLW*CSRTPFRACSTTLYVVRQHHTLGPYSQ*NLQL*PYPAR*GRT*QCYP*HKNILSYERLHPKFWPKQRCS*H**ER*EPC*TTSLSAXXXXRSHRPHLY*RKGQTSEWPSPPTTVVEQIALVLVLPAYSEVVHGRQQLLA*QPIVTLAVWASAHLV*QPV*AARA*QG*TALPGGSVQQSTH  767
                KRKMRSNDVCKFLPSASHC*TNTTLW C +TPFRA STT    RQHHTLG YS+*+ + *PYPA+*GR *Q Y * KN LSYERLHP+F PK+ CS H *E * PC*T SLSAR*+RRSH PHLY*RKGQTS  PSPPTTVV  IAL  VLP + EVV GRQQLLA*QP VTLAVWASAHL *QPV*AARA*+G TALPGGSV+Q  H
Subject    532  KRKMRSNDVCKFLPSASHC*TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYSR*SPRS*PYPAQ*GRI*QLYL*RKNTLSYERLHPRF*PKRTCSLHQ*EH*GPC*TISLSAR*QRRSHHPHLY*RKGQTSRRPSPPTTVVGLIALAPVLPVF*EVVRGRQQLLA*QPNVTLAVWASAHLA*QPV*AARA*RGHTALPGGSVRQVMH  1155

Range 6: 457 to 1155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
312.2 bits(675) 0.0 171/233(73%) 0/233(0%) Plus/Plus
Query       69  *WRRGPQLLQFPTRLVTTPCLKL*HMR*LLYTTTG*CRXXXXXXXXXXXXXNKMSRSPNGKRHNGLLSQQLLASMYHFRISRKHQNQRNLFHNSRWRRRPL*RLAFSSVKVGAMRXXXXXXXXXXXXTGLLTFLSMLRTPLFGPKFGMKPLVGEDIFMSRIAXXXXXXXCGVGLQLKISL*IRPQGVMLPYHV*SCGACAKGRS*ALPKGGVGLTMRG*GEKFTDVVASHLPF  767
                *WR+GPQL Q PT L++T   KL  M  L YTTTG*CR+P SSASSLN L +KMSRSPNGKRH GLLSQQLLAS YHF  +RKH +QRN  HNSRWRRRP *RLAFSSVKVG MRA  SSCGKG+C TG L FL M RT  FG K GMKPLVGE IF S+I LL+SSL CGVGL+ + S *I+PQGVMLP    SCG CAKGR  A PKGGVGLTMRG*GEKFTDVVASHLPF
Subject    457  *WRQGPQLPQLPTCLISTSYSKLFLMHYLSYTTTG*CRMPPSSASSLNRLLSKMSRSPNGKRHIGLLSQQLLASTYHFLKNRKHWSQRNQSHNSRWRRRPP*RLAFSSVKVGVMRATLSSCGKGNCLTGPLMFLLM*RTRSFGLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPKGGVGLTMRG*GEKFTDVVASHLPF  1155

Range 7: 830 to 1156 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 80/109(73%) 0/109(0%) Plus/Plus
Query      442  VVQQGS*RSYQC*EHLCLGQNLG*SLS*ERIFLCQG*HC*VLPYRAG*GYN*RFHCEYGPRV*CCLTTYRVVEHARKGVREHYQRVVLV*Q*EAEGRNLQTSLLLIFLF  768
                +V QG * SY C EH+ LG NLG*SLS*ER+FL Q * C*+LPY AG*GY+   H EY PRV*CCL  + VVE+ARKGV  H+QRVVLV*Q*EAEGRNLQTSLLLIFLF
Subject    830  IV*QGP*CSY*CKEHVRLG*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLF  1156

Range 8: 470 to 781 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 79/104(76%) 0/104(0%) Plus/Plus
Query       82  DLNFCSFXXXXXXXXXXSCNTCVDCCTLPPGSAVYPCQARAA*TGCQTR*AEAQTASVTMGC*ANSCWRPCTTSE*AGSTKTSAICSTTVVGGEGHSDVWPFLQ  393
                DLNF +FRRV* RRR+ SC  C+ C TLPPGSAV P QARAA*TGC  R*AEAQTASVT+GC*ANSCWRP TTS   GST  SAI  TTVVGGEG  DVWPFLQ
Subject    470  DLNFRNFRRV*FRRRIRSCF*CITCRTLPPGSAVCPRQARAA*TGC*AR*AEAQTASVTLGC*ANSCWRPRTTS*KTGSTGASAISPTTVVGGEGRLDVWPFLQ  781

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 1881 to 2255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 38/125(30%) 0/125(0%) Plus/Plus
Query      332  QSVPQQSLEEKATLTFGLFFSKGGGDESGGVILRKGKLFNRALNVPINVKNTFVWAKIWDEASRRRGYFYVKDSIVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVSTTKGWCW  706
                Q+  ++   E+   T   F ++GG  +SG ++L+ GK FN  +N P+ VK T  W +++D  + +  Y Y ++  +    +     ++ DFI  T  G  V LPR   +    +  VST  GWCW
Subject   1881  QAANERRRVERVKATMNAFVAEGGRWKSGAIVLKNGKFFNTFINQPLEVKTTNAWLRVYDIDAEKPIYVYAREGRIFKLCVEGRAPSVIDFIRATQKGHYVELPRTSFFCPATKKMVSTEVGWCW  2255

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 1484 to 1651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 22/56(39%) 0/56(0%) Plus/Plus
Query      377  FGLFFSKGGGDESGGVILRKGKLFNRALNVPINVKNTFVWAKIWDEASRRRGYFYV  544
                F ++  +GGG     + LR    + R+    ++VKNT+ W K+WDE + RRGYFY+
Subject   1484  FDVYMKRGGGFFGEDIFLRDAVPYCRSTRSFVDVKNTYRWTKVWDEQTGRRGYFYM  1651

Range 2: 1697 to 1876 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 20/60(33%) 0/60(0%) Plus/Plus
Query      590  TIEDFIVNTAPGCDVALPRIELWSMRERAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFS  769
                TI +F+    P  +V LP +  +  R R  V  ++GWCW+N  RLR  +  R    S ++
Subject   1697  TITEFLFGVGPDDEVQLPDMAFYCPRLRRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYT  1876

Nucleotide Sequence (315 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
315

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
245.3 1395.7 34% 1.423e-64 96% NC_004667
158.2 261.5 33% 2.255e-38 55% NC_022072
107.4 163.4 32% 4.611e-23 43% NC_029783
84.0 152.9 16% 4.994e-16 49% NC_001836
91.3 149.2 19% 3.101e-18 51% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 10610 to 10924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.3 bits(529) 0.0 105/105(100%) 0/105(0%) Minus/Minus
Query        1  TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV  315
                TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV
Subject  10610  TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV  10924

Range 2: 10611 to 10922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.3 bits(516) 0.0 104/104(100%) 0/104(0%) Plus/Plus
Query        2  TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  313
                TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG
Subject  10611  TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  10922

Range 3: 10610 to 10924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.5 bits(499) 0.0 101/105(96%) 0/105(0%) Plus/Plus
Query        1  DSRSPLFLS*VASRRPIISGFRLWGRNFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC  315
                D RSPLFLS*VASRRPIISGF  WGR+FRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC
Subject  10610  DGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC  10924

Range 4: 10614 to 10922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 100/103(97%) 0/103(0%) Minus/Minus
Query        5  TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESSSPKVENR***VFYSRLS*GIEGCG  313
                TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVES SPK++NR***VFYSRLS*GIEGCG
Subject  10614  TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCG  10922

Range 5: 10615 to 10923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.0 bits(487) 0.0 100/103(97%) 0/103(0%) Minus/Minus
Query        6  HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKFLPQSRKPLIIGLLLAT*LRNRGLR  314
                HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRK LPQ++KPLIIGLLLAT*LRNRGLR
Subject  10615  HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLR  10923

Range 6: 10612 to 10923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.0 bits(487) 0.0 100/104(96%) 0/104(0%) Plus/Plus
Query        3  QPQPSIP*LSRE*KTYY*RFSTLGEELSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV  314
                +PQPSIP*LSRE*KTYY*RF  LGE LSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV
Subject  10612  RPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV  10923

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 11579 to 11890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.2 bits(339) 0.0 64/104(62%) 0/104(0%) Plus/Plus
Query        2  TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  313
                TAAALYSLAKS ++D+L+AVFDFGGGTFDVSFVKKKG+IL V++S GDNFLGGRDID A+   +K+K+ G     KL  FVS++KED+SN+ ++  H++P   G
Subject  11579  TAAALYSLAKSGLDDMLIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKG  11890

Range 2: 11578 to 11889 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 57/104(55%) 0/104(0%) Minus/Minus
Query        1  PPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV  312
                P   G  C      LD SS I DT   +L     P  F L     A SISLPPKKLSP E  T  I PFFLT +TSKVPPPKSKTA N SS+ DLA E +AAAV
Subject  11578  PFIVGTICVSTLGSLDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTAINISSSPDLASEYKAAAV  11889

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 10808 to 11119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 45/104(43%) 0/104(0%) Plus/Plus
Query        2  TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  313
                TAA L  ++ S  ++ +  VFDFGGGTFD+S + K+G +L VI + GDN+LGGRD+D  I++ I   ++     +   I VS MKE +S+  A T+ +IP+E G
Subject  10808  TAAGLLGMSVSSNDNTVYGVFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG  11119

Range 2: 10864 to 11001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 26/46(57%) 0/46(0%) Minus/Minus
Query       58  LITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKT  195
                LI   I  S SLPP+ LSP+  +T + FP F   E SKVPPPKSKT
Subject  10864  LIVFIIFASTSLPPR*LSPSAPITPNTFPLFNIIEMSKVPPPKSKT  11001

Little cherry virus 1, complete genome

Sequence ID: Length: 16934 Number of Matches: 2

Range 1: 9179 to 9394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 35/72(49%) 0/72(0%) Plus/Plus
Query       59  VFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNN  274
                VFDFGGGTFDVS++KK G I+ +I + GD FLGGRDID+A+ E I QK      D  +     ++   +S N
Subject   9179  VFDFGGGTFDVSYIKKHGKIVSIIDTAGDLFLGGRDIDKALAEFISQKTGHSCDDLFINHLKETVTPGVSKN  9394

Range 2: 9178 to 9324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 29/49(59%) 0/49(0%) Minus/Minus
Query       58  IFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKT  204
                +FC I S  ALS+SLPP+  SP   +  +IFP FL  +TSKVPPPKSKT
Subject   9178  VFCEINSAKALSMSLPPRNKSPAVSIMLTIFPCFLIYDTSKVPPPKSKT  9324

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 10390 to 10590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 36/67(54%) 0/67(0%) Plus/Plus
Query        2  TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK  202
                T+AALY   +        AVFDFGGGT D+SF+ +  N++ V+FS GDNFLGGRDIDRAIV+ ++++
Subject  10390  TSAALYGAVRGGALKETYAVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE  10590

Range 2: 10389 to 10571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 31/61(51%) 0/61(0%) Minus/Minus
Query        1  TIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV  183
                TIALS+S PP+KLSP E  T +       N+ SKVPPPKSKTA    S   L    +AA V
Subject  10389  TIALSMSRPPRKLSPFENSTLTTLLNLDMNDISKVPPPKSKTAYVSFSAPPLTAPYKAADV  10571

Nucleotide Sequence (450 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
45
90
135
180
225
270
315
360
405
450

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
323.6 1022.2 37% 6.478e-88 45% NC_004667
253.1 467.7 41% 1.12e-66 35% NC_022072
196.7 275.8 40% 1.035e-49 45% NC_029783
194.0 267.6 20% 6.96e-49 33% NC_016509
153.7 213.4 17% 9.568e-37 43% NC_009992

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 7810 to 8244 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
323.6 bits(700) 0.0 134/145(92%) 0/145(0%) Minus/Plus
Query        8  RTMTKELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL  442
                RTMTKELVLSVGSQRRSGGANTWLGNS+VLCTLLSVVLRGLDY Y+V+SGDDSLIFSRQPLD+DTSVLSDNFGFDVK+FNQAAPYFCSKF+VQV+D LFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKG NREDVIQ L
Subject   7810  RTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQEL  8244

Range 2: 7971 to 8234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 67/88(76%) 0/88(0%) Plus/Minus
Query       18  ITSSRLRPFDRSTKD*KISCKRSISDVFDAPNFTKSFNGSGTKNKPSSTWTINLEQKYGAA*LNIFTSKPKLSLKTDVSTSKGCRLKI  281
                +TSS L+PF+RSTKD*KISCKRSIS+V +APN TKS +GSGTK + SST T NLEQKYGAA L IFTSKPKLSL+TDVS S GCRL I
Subject   7971  MTSSLLKPFERSTKD*KISCKRSISEVLEAPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISNGCRLNI  8234

Range 3: 7809 to 7907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query      345  KVQRTILLPNQVFAPPLRLCDPTDSTSSFVMVL  443
                KV +T L PN V APPLRL +PTD+T+SFV+VL
Subject   7809  KVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVL  7907

Range 4: 7816 to 8010 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 34/65(52%) 0/65(0%) Plus/Minus
Query      242  NRCVDV*RLPAKNKTIIAAYDHIIVI*TPKYNGQQSTKNDTIT*PSVCSTTPPLRSNRQHKLLRH  436
                NR +++ RLP K K II A  +I +I*+PKY GQQ  ++ TI+ P V +TT PLR++RQH+ LRH
Subject   7816  NRRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRH  8010

Range 5: 8053 to 8238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 34/62(55%) 0/62(0%) Plus/Minus
Query       14  LNNVLPIKALRQIHKRLKNLMQKIYIRCF*RSKFHEEFQRVGNEKQTVIHLDHKLRAKIWSS  199
                L++VL I+ LR+I +RLKNLM K+ I  F  SK +EEF+ +GN+K+T++ L+ KLR KIWSS
Subject   8053  LDDVLSIETLRKIDERLKNLM*KVDI*SFGSSKLNEEFKWIGNKKETILDLN*KLRTKIWSS  8238

Range 6: 7817 to 8230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 69/138(50%) 0/138(0%) Minus/Plus
Query       22  *RRSLCCLLDRKGGVVEQTLG*VIVSFFVLCCPLYLGV*ITIMWS*AAMIVLFLAGSL*TSTHRF*VIILALM*RCLIKLLHIFALSLWSRWMTVCFSFPTR*NSS*NLERQKHLI*IFCMRFFSLLWICRRALIGRT  435
                *RR+ CCL   +G VV  T G  IV     CCP YLG *I ++   A MI L+L GS      RF* IIL L *R L KLLHIF LS   +   V F FP   NSS +LE  K  I  F MRFF+L  I RR  I RT
Subject   7817  *RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD*IIVIL*LAVMIALYLVGSRWILIRRF*AIILVLT*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLELPKLQISTFYMRFFNLSSIFRRVSIERT  8230

Range 7: 7809 to 8213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 61/135(45%) 0/135(0%) Minus/Plus
Query       39  QDHDEGACAVCWIAKAEWWSKHLVR**YRSLYFAVRCT*GSRLRLCGHKRR**SYF*PAAFRRRHIGFK**FWL*CEDV*SSCSIFLL*VYGPGG*RFVFRSRPVETLREIWSVKNI*YRSFA*DFSVFCGSVEG  443
                ++ DEG   VC +++A+WW  H+V  *+  ++  VR T*G RL L    R ** Y * AA    ++G + *FW * +D * SCSIFL *V+       +F SR   TLR +WS +N  YR F *DFS+F  S EG
Subject   7809  ENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YVGSER*FWF*RKDF*PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VWSFQNFRYRPFT*DFSIFRRSFEG  8213

Range 8: 7817 to 8077 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 41/87(47%) 0/87(0%) Plus/Minus
Query      175  T*SKNMEQLD*TSSHQSQNYHLKPMCRRLKAAG*K*DYHRRL*PHNRNLDP*VQRTAKYKERYYYLTKCLLHHSAFAIQQTAQAPSS  435
                T*+KNMEQL * S  Q+QNY  +P  +   AA * * YH R   +N NL P*V RT +     Y+ T C  HH A   +QT   PSS
Subject   7817  T*NKNMEQLG*KSLRQNQNYRSEPTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSS  8077

Range 9: 8105 to 8233 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 23/43(53%) 0/43(0%) Plus/Minus
Query       19  *RPPD*GPSTDPQKTEKSHAKDLYQMFLTLQISRRVSTGRERK  147
                *RP  * PS D +K EKSH K  Y  F  LQ  RRV   RE+K
Subject   8105  *RPLY*NPSKDRRKIEKSHVKGRYLKFWKLQT*RRV*VDREQK  8233

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 8883 to 9308 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.1 bits(546) 0.0 101/142(71%) 0/142(0%) Minus/Plus
Query        8  TKELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL  433
                +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG +  YVV+SGDDSLIFSR  LD+DTS LSDNFGFDVK+F QA PYFCSKF+VQ D GLFFVPDPLK+F+K G S+ +D+DLLHE++ S VD++K    E V+  L
Subject   8883  SKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLKMFIKLGVSRVADLDLLHEVYMSMVDITKNFGNEMVVNEL  9308

Range 2: 9035 to 9265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 39/77(51%) 0/77(0%) Plus/Minus
Query       51  STKD*KISCKRSISDVFDAPNFTKSFNGSGTKNKPSSTWTINLEQKYGAA*LNIFTSKPKLSLKTDVSTSKGCRLKI  281
                ST D   S  +S S   + PN    F GSGTKN P S  T N EQK G A L  FTS PKLSL  +VS S   R KI
Subject   9035  STIDM*TS*SKSKSATLETPNLINIFRGSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNSVREKI  9265

Range 3: 8883 to 9047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 25/55(45%) 0/55(0%) Plus/Minus
Query      269  PAKNKTIIAAYDHIIVI*TPKYNGQQSTKNDTIT*PSVCSTTPPLRSNRQHKLLR  433
                P +++TII A++HIIV+ +  ++ QQ T++  + *PSV +T  PL  NRQ  LLR
Subject   8883  PGEDQTIITAHNHIIVLISS*HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLR  9047

Range 4: 8888 to 8971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 20/28(71%) 0/28(0%) Plus/Minus
Query      345  KVQRTILLPNQVFAPPLRLCDPTDSTSS  428
                KVQ T + PNQVFAPPLRL  PTD T+S
Subject   8888  KVQSTTVFPNQVFAPPLRL*LPTDKTNS  8971

Range 5: 9004 to 9183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 21/60(35%) 0/60(0%) Plus/Minus
Query      133  GRERKTNRHPPGP*T*SKNMEQLD*TSSHQSQNYHLKPMCRRLKAAG*K*DYHRRL*PHN  312
                G  ++T  +P    T +K+  QL * +S Q+Q+ H    C+    +G + DYH R  PHN
Subject   9004  GLVQRTVHYPSAQGTSNKSRAQLA*RASRQTQSCH*VMRCQYPIPSGRRSDYHHRSQPHN  9183

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 8635 to 9057 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 82/141(58%) 0/141(0%) Minus/Plus
Query        8  KELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL  430
                KEL LS+GSQRRSGGANTWLGN++VL +LLS++L    +D V+ SGDDSLIFS++ LD+DT+ LS  +GFDVK+ + + PYFCSK+ V+ +DGL FVPDP KL +K G  +  +  L+HE F+SFVDL+   N E+VIQ L
Subject   8635  KELSLSIGSQRRSGGANTWLGNTMVLLSLLSILLNKRPFDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFKLLMKAGYLREDNDALIHEHFKSFVDLTGSYNSEEVIQEL  9057

Range 2: 8805 to 8957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 26/51(51%) 0/51(0%) Plus/Minus
Query      108  PNFTKSFNGSGTKNKPSSTWTINLEQKYGAA*LNIFTSKPKLSLKTDVSTS  260
                P F KS NGSGTK KPS  +T   EQK G       TS P   LK  VS S
Subject   8805  PAFIKSLNGSGTKRKPSFVFTKYFEQK*GTDKSLSLTSNPYA*LKVVVSRS  8957

Range 3: 8625 to 8711 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 13/29(45%) 0/29(0%) Plus/Minus
Query      354  RTILLPNQVFAPPLRLCDPTDSTSSFVMV  440
                +TI+ PN VFAPPL    P D  +S + +
Subject   8625  KTIVFPNHVFAPPLLR*LPIDKDNSLLCI  8711

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 8349 to 8768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.0 bits(417) 0.0 77/140(55%) 0/140(0%) Minus/Plus
Query        8  ELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL  427
                ELVLSVG+QRRSGGANTWLGN++VL TLL++ L+G +   VV+ GDDSLIFS+  L +D  +L ++FGFD+K+  Q APYFCSK++V+  D  +F+PDP KLF+K    +  + DLL E+F SFVDL++G   E  +Q L
Subject   8349  ELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDLLFEVFTSFVDLTRGFGDESAVQQL  8768

Range 2: 8333 to 8431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 19/33(58%) 0/33(0%) Plus/Minus
Query      345  KVQRTILLPNQVFAPPLRLCDPTDSTSSFVMVL  443
                KV RT + PN VFAPP   C PTD TSSF  ++
Subject   8333  KVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIV  8431

Range 3: 8579 to 8740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 18/54(33%) 0/54(0%) Plus/Minus
Query       36  RPFDRSTKD*KISCKRSISDVFDAPNFTKSFNGSGTKNKPSSTWTINLEQKYGA  197
                +P  +ST +   S  +S        +F  + NGSG K + S   T   EQK GA
Subject   8579  KPRVKSTNEVNTSNNKSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GA  8740

Plum bark necrosis and stem pitting-associated virus, complete genome

Sequence ID: Length: 14214 Number of Matches: 2

Range 1: 8307 to 8684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.7 bits(329) 0.0 64/126(51%) 0/126(0%) Minus/Plus
Query       41  LSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSK  418
                LS+GSQRR+G A TWLGN++V   L++ VL   ++  +  SGDDS++F   PLD+D S    +F FDVK+F    PYFCSKF V    GL FVPDP+KLFV  G+ K  D  ++ E F SF+DL+K
Subject   8307  LSIGSQRRTGTATTWLGNTVVNMALMARVLGCENFSSMAFSGDDSILFHHSPLDLDISNYELHFAFDVKLFRMTVPYFCSKFFVVGSSGLNFVPDPVKLFVSLGSEKNDDESVMRERFVSFLDLTK  8684

Range 2: 8459 to 8683 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 32/75(43%) 0/75(0%) Plus/Minus
Query       42  FDRSTKD*KISCKRSISDVFDAPNFTKSFNGSGTKNKPSSTWTINLEQKYGAA*LNIFTSKPKLSLKTDVSTSKG  266
                F +S K   +S     S  F  P  T +F GSGTK +P    T NLEQKYG   L   TSK K +    +S SKG
Subject   8459  FVKSRKLTNLSRITDSSSFFSEPKLTNNFTGSGTKLRPDDPTTKNLEQKYGTVILKSLTSKAKCNS*LLISKSKG  8683

Nucleotide Sequence (732 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
74
148
222
296
370
444
518
592
666
732

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
563.0 3106.8 28% 1.099e-159 96% NC_004667
312.9 491.7 36% 2.138e-84 32% NC_022072
216.4 216.4 31% 2.355e-55 39% NC_016509
147.4 178.1 26% 7.91e-38 38% NC_029783
119.9 146.1 20% 2.668e-28 42% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 12

Range 1: 10833 to 11561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
563.0 bits(1225) 0.0 240/243(99%) 0/243(0%) Minus/Plus
Query        2  AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR  730
                AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV  QPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR
Subject  10833  AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR  11561

Range 2: 10831 to 11562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
545.9 bits(1185) 0.0 240/244(98%) 0/244(0%) Plus/Minus
Query        1  LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSVHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAENPLPRPLAYSLKCPPVSVRYYLPKYRSXXXXXXXXNI*NRYCRTRP*ISAAN*PHHS*P*LEHLTPQS*QQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH  732
                LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTS HLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAE+PLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTR *ISAAN*PHHS*P*LEHLTPQS*+Q*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH
Subject  10831  LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P*LEHLTPQS*RQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH  11562

Range 3: 11073 to 11561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
384.6 bits(833) 0.0 159/163(98%) 0/163(0%) Plus/Minus
Query        2  SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRYLRQISHITPDL  490
                SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERR I*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLK HYLVR*RIR*SVHQSQSAITCQ+IAVNLSPTSHRTSKIGTVEHD RYLRQISHITPDL
Subject  11073  SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDL  11561

Range 4: 10833 to 11033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.5 bits(368) 0.0 67/67(100%) 0/67(0%) Plus/Minus
Query      530  RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG  730
                RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG
Subject  10833  RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG  11033

Range 5: 11077 to 11562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
371.8 bits(805) 0.0 158/162(98%) 0/162(0%) Minus/Plus
Query        1  SGVMWLICRRYLRSCSTVPILDVRWLVGLRFTAIFWQVIAD*DWWTLXXXXXXXR*WIFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MNRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE  486
                SGVMWLICRRYL+SCSTVPILDVRWLVGLRFTAI WQVIAD*DWWTL*RIR*RTR*W+FSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*M+RRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE
Subject  11077  SGVMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE  11562

Range 6: 10831 to 11004 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 58/58(100%) 0/58(0%) Minus/Plus
Query      559  MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK  732
                MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK
Subject  10831  MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK  11004

Range 7: 11192 to 11560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
284.7 bits(615) 0.0 121/123(98%) 0/123(0%) Minus/Plus
Query        3  *RTETGGHFNEYANGRGSGFSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*TDVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE  371
                *RTETGGHFNEYANGRGSG SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK* DVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE
Subject  11192  *RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE  11560

Range 8: 10961 to 11131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 55/57(96%) 0/57(0%) Minus/Plus
Query      432  NRCTIQR*GCGSIQNWS*QLLPRPGYCCYDWGVKCSS*GQE*CG*FAADI*GRVRQY  602
                NRCTIQR*GCGSIQNWS*QLLPRPGYC YDWGVKCSS*GQE*CG*FAADI* RVRQY
Subject  10961  NRCTIQR*GCGSIQNWS*QLLPRPGYCRYDWGVKCSS*GQE*CG*FAADI*SRVRQY  11131

Range 9: 10832 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 26/26(100%) 0/26(0%) Minus/Plus
Query      654  CQVRDIRILDEGRLV*Q*RYNATPYP  731
                CQVRDIRILDEGRLV*Q*RYNATPYP
Subject  10832  CQVRDIRILDEGRLV*Q*RYNATPYP  10909

Range 10: 11264 to 11560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 99/99(100%) 0/99(0%) Plus/Minus
Query        3  LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI  299
                LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI
Subject  11264  LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI  11560

Range 11: 10958 to 11197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 79/80(99%) 0/80(0%) Plus/Minus
Query      366  PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGATIA  605
                PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA
Subject  10958  PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA  11197

Range 12: 10832 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 26/26(100%) 0/26(0%) Plus/Minus
Query      654  GIRCCVIALLLDKSSFIEDTNIPNLA  731
                GIRCCVIALLLDKSSFIEDTNIPNLA
Subject  10832  GIRCCVIALLLDKSSFIEDTNIPNLA  10909

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 11804 to 12529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
312.9 bits(678) 0.0 127/242(52%) 0/242(0%) Minus/Plus
Query        2  KLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR  727
                KL  FVS++KED+SN+ ++  H++P   G E+V LT  EL  +VAPF+ +AV++F   ++ F PD  +AV+TGGSSALV+VR  +A LP ++ VV+D  DFRCSVACGAKVYCD L G   LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT  Y+V   +VVYG++EGE NR++LNE TFR   +       TD  +++LS DGT+SV +NG+   NE+     +NV+ S  Y +GR
Subject  11804  KLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAELTEVVAPFAKKAVKIFSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGR  12529

Range 2: 11932 to 12159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 41/76(54%) 0/76(0%) Plus/Minus
Query      372  LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGAT  599
                LP K SQ T AP ATEHLKS  S TTL   G  A   LT T+AL+PPV TA   SG  LS       TA   NGAT
Subject  11932  LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSGRNLSIASEKIFTAFLANGAT  12159

Range 3: 12235 to 12270 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 10/12(83%) 0/12(0%) Plus/Minus
Query      261  VYEQGIGLPFGK  296
                VYEQGIG P GK
Subject  12235  VYEQGIGFPLGK  12270

Range 4: 12298 to 12357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 12/20(60%) 0/20(0%) Plus/Minus
Query      174  NVGSFRKALLFSPSNIPYTT  233
                NV S R    FSPS  PYTT
Subject  12298  NVSSLR*LRFFSPSYTPYTT  12357

Range 5: 12074 to 12367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 31/98(32%) 0/98(0%) Plus/Minus
Query      164  YAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRY  457
                + PER F+  +++ L F ++++ I  TH V   +   YW    +N  RL++++LV   I   ++QS+  +T   IAV    T + TSK+  V H   Y
Subject  12074  FTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASY  12367

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 10624 to 11295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(467) 0.0 88/224(39%) 0/224(0%) Minus/Plus
Query       53  LGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL  724
                L + ++ +KE +  N       +    G+E + ++ DEL+A+  PF  RA+++F  G +     P++ V+TGGS AL  V+  +  LP +S+  +DS  FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+  F  +VIFPKG PIP  Y   + + G  + YGI EGE+NR +LNE  F+G   R  +  ++D  ++ +S DG + + V+G ++KN  L
Subject  10624  LAVMIADLKEKICVNGGTQYTQVKTSNGLETLSMSVDELNAVSEPFVDRAIKIFAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL  11295

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 11114 to 11602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.4 bits(316) 0.0 62/163(38%) 0/163(0%) Minus/Plus
Query      161  EGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVS  649
                +G  ++   T D+L +   PF  RAV++F   + +    P   V+TGGS+AL  + +   ++  ++ V+++   FR SVA GAK+Y D+L   S L L+D+L+ TL+D++  F+  ++FPKG+ IP ++   YTVG  +V YG++EGE N  +LN+ TF+GV+
Subject  11114  DGSRQIASYTLDQLISDSGPFLDRAVQMFSRLVRDLANPPTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA  11602

Range 2: 11042 to 11119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.8 bits(61) 0.0 13/26(50%) 0/26(0%) Minus/Plus
Query      641  IFVSSMKEDLSNNNAITQHLIPVEGG  718
                I VS MKE +S+  A T+ +IP+E G
Subject  11042  IIVSKMKEIVSDTLATTEQIIPLEDG  11119

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 10273 to 10629 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.9 bits(256) 0.0 53/119(45%) 0/119(0%) Minus/Plus
Query      173  VIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTF  529
                V  VM GGSSA+  +R  VA    + +VVFD+  FR +VA GAKVY D L  N GL LVDTL++ + DE+V  +  V+  KG  +P +    Y   GG++   ++EGE+  AF+NEPT+
Subject  10273  VNVVMVGGSSAIPLLRDAVATCRGVKRVVFDNNTFRIAVAVGAKVYSDSLVSNKGLVLVDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPTY  10629

Range 2: 10681 to 10752 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.2 bits(51) 0.0 10/24(42%) 0/24(0%) Minus/Plus
Query       44  LSTDGTVSVIVNGEEVKNEYLVPG  115
                L  DG++ V V G+++KN++L  G
Subject  10681  LRRDGSLVVSVFGKQIKNKFLPKG  10752

Nucleotide Sequence (342 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
342

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
232.0 1139.1 30% 1.644e-60 72% NC_004667
72.1 72.1 17% 2.231e-12 43% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 3732 to 4022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.0 bits(500) 0.0 90/97(93%) 0/97(0%) Minus/Plus
Query       50  LGARASANTWKFGGFSNNWCAVPEVVWRGRSISSLLLPITLGASLVIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTRHDTVP  340
                LGARASANTWKFGGFSNNWCAVPEVVWRG+S+SSLLLPITLG SL+IRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGT+H+ VP
Subject   3732  LGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP  4022

Range 2: 3730 to 4068 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 83/113(73%) 0/113(0%) Plus/Minus
Query        4  HHSLRYQRRIHHCHLQEPYHAESQMDPHLRHSRSPGNT*ASHHRHSSPQLVEHKQVEVWYR*ANPL*PKKRLA**AVATS*YSSLAKQPRERRTNYWRTPQTSKCSR*PSPQA  342
                HHSLR+ + IH    +EP HAESQMD HLRHS+SPGNT*ASH  HSSP  V  KQVEVW R*A+PL* K  LA**AV  S*+SSLAKQPRE+RTNYWR+ QTSK SR*PSPQA
Subject   3730  HHSLRH*KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQA  4068

Range 3: 3731 to 3937 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 62/69(90%) 0/69(0%) Plus/Minus
Query      135  TFLPSTGGT*AS*GMVSLSKPLMTKEAPSVIGSSNELILLPRQTTSGTAHQLLENPPNFQVFALALAPS  341
                TFLPSTGGT*AS*GMVSLSKPLM K+ PSVIGS+NEL L PRQTTSGTAHQLLE PPNFQVFALALAPS
Subject   3731  TFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPS  3937

Range 4: 3983 to 4066 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 23/28(82%) 0/28(0%) Plus/Minus
Query        6  S*LEIPEEDPSLSSPGTVSCRVPDGPAP  89
                S*LE  E DPSLSSPGT SC VPDGPAP
Subject   3983  S*LETLEVDPSLSSPGTASC*VPDGPAP  4066

Range 5: 3867 to 4067 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 49/67(73%) 0/67(0%) Plus/Minus
Query        5  IIA*DTRGGSITVISRNRIMPSPRWTRTFVIVEVPVIPKRLIIDIPPLNWWNISKLRYGIVKQTPYD  205
                IIA*DTR GSI +++ NR M SPRWT TFVIV+VPVIPKRLI+ IPPL  W++SKLRYG+VKQ PYD
Subject   3867  IIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYD  4067

Range 6: 3732 to 3827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 27/32(84%) 0/32(0%) Plus/Minus
Query      245  DTPPSPNNLGNGAPIIGEPPKLPSVRASPRPK  340
                DT PSPNNLGN APIIGE  KLPS+RASPRPK
Subject   3732  DTLPSPNNLGNSAPIIGEASKLPSIRASPRPK  3827

Range 7: 3731 to 4021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 76/97(78%) 0/97(0%) Minus/Plus
Query       51  AWGEG*REHLEVWGVLQ*LVRRSRGCLAREEYQLVATAYYARRFFGHKGFA*RYHTSTCLCSTS*GEECL**DA*VLPGLRL*RRCGSIWDSA*YGS  341
                AWGEG*RE+LEVW +LQ*LVR SRGCLAREE QL+ TAYYAR  F HKG A*R+HTSTCL  T  GEEC+ *DA*VLPGL L*RRC SIWDSA* GS
Subject   3731  AWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGS  4021

Range 8: 3868 to 4071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 49/68(72%) 0/68(0%) Minus/Plus
Query        1  S*GVCLTIPYLNLLMFHQLRGGMSMMRRLGITGTSTMTKVRVHLGLGMIRFLEMTVMDPPLVSQAMMV  204
                S*G CLT PYLNLL  H+ RGGM  MRRLGITGT TMTKV VHLGL M RF     MDP LVSQAMM+
Subject   3868  S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMML  4071

Range 9: 3730 to 3828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 28/33(85%) 0/33(0%) Minus/Plus
Query      244  CLGRGLARTLGSLGGSPIIGAPFPRLFGEGGVS  342
                CLGRGLAR LGSL  SPIIGA FPRLFGEG VS
Subject   3730  CLGRGLARILGSLEASPIIGALFPRLFGEGRVS  3828

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 5225 to 5398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 25/58(43%) 0/58(0%) Minus/Plus
Query      104  VPEVVWRGRSISSLLLPITLGASLVIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD  277
                +P +VW+G +   +L+ + +  SLV+R L  D +PQ+  +  +EGRNVYDE L+YY+D
Subject   5225  MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD  5398

Nucleotide Sequence (878 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
88
176
264
352
440
528
616
704
792
878

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
630.2 3520.7 34% 8.097e-180 73% NC_004667
303.9 679.7 19% 1.311e-81 31% NC_022072
112.4 278.3 21% 3.243e-30 43% NC_016509
105.5 207.6 13% 6.972e-22 31% NC_029783
79.0 79.0 9% 6.975e-14 41% NC_011702

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 11

Range 1: 13584 to 14435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
630.2 bits(1369) 0.0 275/284(97%) 0/284(0%) Plus/Minus
Query       22  ESLLFVSNKPSYNYLGERTREDQEELHSLT*KKDSLVCLSATATHESLHAYKPP*IINKR*IFLNFSPIYRHRSXXXXXXXXEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCSINLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELVCFY  873
                ESLLFVSNKPS+NYLGER REDQEELH LT*KKDSLVCLSATATHESLH YK P*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQC INLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELV  +
Subject  13584  ESLLFVSNKPSHNYLGERIREDQEELHPLT*KKDSLVCLSATATHESLHVYKLP*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCGINLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELVWIF  14435

Range 2: 13593 to 14438 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
621.0 bits(1349) 0.0 275/282(98%) 0/282(0%) Minus/Plus
Query       19  DKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWGLIRM*TFMSRGC*KTNKTIFLSSQRMKLLLILPGTFAQIVIRGLI*YKEQTFP  864
                DKFLKTMGKGIALDL GVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSW LI M*TFMSRGC*KTNKTIFLSSQRMKLLLILP TFAQIV+ GLI*YKEQTFP
Subject  13593  DKFLKTMGKGIALDLAGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWELIHM*TFMSRGC*KTNKTIFLSSQRMKLLLILPDTFAQIVM*GLI*YKEQTFP  14438

Range 3: 13583 to 14455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
613.2 bits(1332) 0.0 279/291(96%) 0/291(0%) Minus/Plus
Query        2  DKSRQVLEDYGQGNSFGLDGSYPQTESY*RARESISRGGNED*CCIDGAV*EGYGRR*RSN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHXXXXXXXXXXXXXXRNTSMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSANEAPPDPPGYVRPDSYTRAYLIQRADFPAKHTLS  874
                ++SRQVLEDYGQGNSFGL GSYPQTESY*RARESISRGGNED*C IDGAV*EGYGRR*RSN*D+ILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRN SMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSA+EAPPDPPGYVRPDSY RAYLIQRADFP   +LS
Subject  13583  ERSRQVLEDYGQGNSFGLGGSYPQTESY*RARESISRGGNED*CRIDGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRNISMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSADEAPPDPPGYVRPDSYVRAYLIQRADFPNTQSLS  14455

Range 4: 13865 to 14437 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
445.1 bits(965) 0.0 186/191(97%) 0/191(0%) Plus/Minus
Query       20  GKVCSLYQISPRITIWANVPGRIRRSFIR*LERKIVLFVFQQPRLMKVYMRISPHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  592
                GKVCSLYQISP ITIWANV GRIRRSFIR*LERKIVLFVFQQPRLMKVYM IS HELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHA+IASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP
Subject  13865  GKVCSLYQISPHITIWANVSGRIRRSFIR*LERKIVLFVFQQPRLMKVYMCISSHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHANIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  14437

Range 5: 13592 to 13825 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 76/78(97%) 0/78(0%) Plus/Minus
Query      632  EDDVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKNLS  865
                EDDVKNVQAICITYKKN VLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTP KSKAIPLPIVFKNLS
Subject  13592  EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPAKSKAIPLPIVFKNLS  13825

Range 6: 13798 to 14454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
479.0 bits(1039) 0.0 211/219(96%) 0/219(0%) Plus/Minus
Query        3  DRVCLAGKSALCIK*ALV*LSGRTYPGGSGGASFADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSMLVLRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ  659
                D++ + GKSALCIK*AL *LSGRTYPGGSGGAS ADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSML+LRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ
Subject  13798  DKL*VLGKSALCIK*ALT*LSGRTYPGGSGGASSADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSMLILRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ  14454

Range 7: 13579 to 13656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 23/26(88%) 0/26(0%) Plus/Minus
Query      801  VCG*LPSSPKLFPCP*SSRTCLLLSQ  878
                VCG*LP SPKLFPCP*SSRTCL LS+
Subject  13579  VCG*LPPSPKLFPCP*SSRTCLDLSR  13656

Range 8: 13711 to 13746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 11/12(92%) 0/12(0%) Plus/Minus
Query      711  P*PSYTAPSMQH  746
                P*PSYTAPSM+H
Subject  13711  P*PSYTAPSMRH  13746

Range 9: 13846 to 14346 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 165/167(99%) 0/167(0%) Minus/Plus
Query      111  TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSXXXXXXXXXXXTICSTTTQY*HGI*LDSRRLEXXXXXXXXXXXTSSNYCKRSSYDRCL*IGEKFRNXXXXXXXXXXXYACRLS*VAVAERQTRLSFFQ  611
                TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHG LY CRLS*VAVAERQTRLSFFQ
Subject  13846  TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHGSLYTCRLS*VAVAERQTRLSFFQ  14346

Range 10: 13591 to 13794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 66/68(97%) 0/68(0%) Minus/Plus
Query      663  QTSS*RLWARE*LWT*RELPTNRKLLTSQGKYQ*RWQ*RLMLH*WSCVRRLWAPMTQQLRQNSSCT*C  866
                QTSS*RLWARE*LWT RELPTNRKLLTSQGKYQ*RWQ*RLM H*WSCVRRLWAPMTQQLRQNSSCT*C
Subject  13591  QTSS*RLWARE*LWTWRELPTNRKLLTSQGKYQ*RWQ*RLMPH*WSCVRRLWAPMTQQLRQNSSCT*C  13794

Range 11: 14389 to 14454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 16/22(73%) 0/22(0%) Minus/Plus
Query        3  PR*LYEGLFDTKSRLSRQTHSI  68
                PR*L EGLFDTKSRLS+ +  I
Subject  14389  PR*LCEGLFDTKSRLSQYSKLI  14454

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 7

Range 1: 14514 to 15122 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.9 bits(657) 0.0 130/203(64%) 0/203(0%) Minus/Plus
Query      253  KFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQK  861
                KFL  M K   L++     KPKV+ EPG +S EVA K+NA L  LC+K++GA+D  T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY   V++ IK A  STGYENPVRQYLA+FTPT +TA LNGKL  NEKVMAQHGVPPKFF YT+DCVRP+Y+LFNN AILAWNLAR++AF++KT ++DNTLHNV+Q+L K
Subject  14514  KFLDMMSKNTILEIGDNAFKPKVVAEPGMLSQEVANKVNAELKVLCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDCVRPSYNLFNNSAILAWNLARREAFKSKTASSDNTLHNVYQMLNK  15122

Range 2: 14783 to 15115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 64/111(58%) 0/111(0%) Plus/Minus
Query      260  NSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  592
                N W TLC VLS   VL LNA  LAKFHA IA LLN+   G TQS V  KN GGTPC AITFS   SLP  +AV  VGV +ARY  TGFS PV+  AC +   T +  IF P
Subject  14783  NIWYTLCSVLSDDAVLDLNASLLAKFHARIALLLNKL*EGLTQSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP  15115

Range 3: 14516 to 14737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 30/74(41%) 0/74(0%) Plus/Minus
Query      638  DVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKN  859
                DV NV AIC   +  FV V  S AP  F HS+ ++A    ATS  + PGS  T GL      S+ +   I+ KN
Subject  14516  DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFSSAFTLFATSWLSMPGSATTLGLKALSPISRIVFFDIMSKN  14737

Range 4: 14646 to 15101 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 55/152(36%) 0/152(0%) Plus/Minus
Query      274  VV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQ  729
                VV* +I R  L  +     *IPC    V+E +VRR  A+  V KE RWYS+L H+LLV  * T++  R +   + R IL   V +  R +S+F  + +   + L +I    VV+LF   R R  ER  +L +   E   S  ++ +  LLTQ
Subject  14646  VV*RII*RRCLRLECFPPC*IPCQNSTVIE*VVRRPYAIQCVGKELRWYSVLSHHLLVRS*LTVKHSRHDRRGKPRQILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ  15101

Range 5: 16336 to 16548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 24/71(34%) 0/71(0%) Minus/Plus
Query      310  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFR  522
                N VR Y+ Y+  T ++  L+GKL       A+HGVP +F P+  D        +  D + A  LA   A R
Subject  16336  NKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIR  16548

Range 6: 14678 to 14980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 31/101(31%) 0/101(0%) Minus/Plus
Query      395  SN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVH  697
                +N D++     AD   VL++    +QRV L  + *W +D+   G+* + T      + +P  +VS V++ +   G    * +  REG G+  STT +L +H
Subject  14678  TNSDELRSTNFADGSDVLHV*VFRIQRVRLPGDS*W*KDLRRRGV*HNKTRLRVYRVREPSSSVSGVVYPDDRDGYA*R*ANS*REGDGSTRSTT*VLCLH  14980

Range 7: 15029 to 15133 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 12/35(34%) 0/35(0%) Minus/Plus
Query      242  TSMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVAT  346
                + MEFS    +   D   R*+ TQR+P + +   T
Subject  15029  SGMEFSKEGSIQV*DSVVR*YATQRVPDVEQVKVT  15133

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 4

Range 1: 13700 to 14005 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 47/102(46%) 0/102(0%) Minus/Plus
Query      262  VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL  567
                V   + + A  + +ENP+RQY   F+ T +   LNGKL  NEKV  QHGVP +F PYT D  RP+Y  F+NDAI AW LA + AF  K+    + L N  +L
Subject  13700  VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESAFGRKSNVTSSVLRNTSEL  14005

Range 2: 13478 to 13603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 18/42(43%) 0/42(0%) Minus/Plus
Query      658  PGKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQI  783
                PG V+  VA  I+  L  LC +VMG  D  + T FFL ++Q+
Subject  13478  PGLVTPAVATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQL  13603

Range 3: 13741 to 13953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 32/71(45%) 0/71(0%) Plus/Minus
Query      314  NACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS  526
                NA   A  HA +ASLLN    G  +S VYG+N  GTPCC  TFSF  + PF +    V      Y   GFS
Subject  13741  NADSAANCHALMASLLN*E*DGLQKSKVYGRNLLGTPCCIATFSFGLNFPFNIKCTAVAENNLAY*RIGFS  13953

Range 4: 15231 to 15398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/56(45%) 0/56(0%) Minus/Plus
Query      388  IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  555
                I+ +   + YENPVRQY+ +F+ T I+   +G +V N  VMA+HGV  +F PY  D
Subject  15231  IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD  15398

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 13986 to 14291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 44/102(43%) 0/102(0%) Minus/Plus
Query      262  VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL  567
                +Y  I+ A +   YENPVRQY   F+P+ I+A+  GK+  N+KV+AQHGV  +F  Y +D +RP+Y  +N   I AW LA+++AF     +   TLHN  +L
Subject  13986  LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLAQREAFSAVASSNATTLHNTSEL  14291

Range 2: 14024 to 14278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 32/85(38%) 0/85(0%) Plus/Minus
Query      275  LCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*  529
                LCKV++      L A   A   A I   L  + +G + S  Y      TPCCA TF F   LP  +A++ +G  + +YC TGFS*
Subject  14024  LCKVVALELATALKASR*ANCQARICLTL*YA*LGLSTSKQYEAKRFTTPCCAKTF*FGLILPTELALIILGENFRQYCRTGFS*  14278

Range 3: 15476 to 15700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 23/75(31%) 0/75(0%) Minus/Plus
Query      304  YENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNK  528
                Y N +R+Y+ +++ T I+    G +  N    A HGV   + PY  D V         D  +A  LA+  A +NK
Subject  15476  YSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNK  15700

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 1

Range 1: 12579 to 12818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 33/80(41%) 0/80(0%) Minus/Plus
Query      316  IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQA  555
                +  + A+ GYEN +RQ+   FT   +    +GKL +N K+ A HGVPP ++PY+ DC+     LF  DA LA  LA+  A
Subject  12579  LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDARLFGYDASLAAELAKMVA  12818

Nucleotide Sequence (345 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
345

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
68.4 1030.0 47% 1.852e-22 62% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 18

Range 1: 17710 to 17835 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 30/42(71%) 0/42(0%) Minus/Plus
Query       91  NDYSFVV*VAVRGKMTKLYLTV*HSDVCKISP*SR**YCSSV  216
                + ++FV *V  RGKMTKLYLTV*+SD+CKISP*SR**Y  S+
Subject  17710  SSFAFVE*VLFRGKMTKLYLTV*YSDICKISP*SR**YYISI  17835

Range 2: 17834 to 17917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 24/28(86%) 0/28(0%) Minus/Plus
Query        5  *YNKRQNPMVNWDLGGPLMRLTYRQ*VR  88
                *YNKRQNP+  WDLGGPL RLTYRQ*VR
Subject  17834  *YNKRQNPIKVWDLGGPLTRLTYRQ*VR  17917

Range 3: 17681 to 17824 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 30/48(62%) 0/48(0%) Plus/Minus
Query      102  NTTIDFTD*FYKHQSVKP*GRV*SSYLELRPKLQKSSHYFSTNKMFLF  245
                N TIDFTD*FYK+QS+KP*G+V*SSYLE++P LQK      T+ +  F
Subject  17681  NITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKTSLIISF  17824

Range 4: 17848 to 17919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 21/24(88%) 0/24(0%) Plus/Minus
Query        3  DLTYCR*VSLIRGPPRSQFTIGFW  74
                DLTYCR*VSL+RGPPRSQ  IGFW
Subject  17848  DLTYCR*VSLVRGPPRSQTLIGFW  17919

Range 5: 17722 to 17835 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 29/38(76%) 0/38(0%) Plus/Minus
Query       91  YATTILLSTLRTNFTNIRVLNREVEFSHLTSNCDLNYK  204
                Y   I LSTLRTNFTNIRVLNREV+FSHLTS  +L YK
Subject  17722  YTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYK  17835

Range 6: 17834 to 17917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 23/28(82%) 0/28(0%) Plus/Minus
Query        5  PNLLSIS*PHKRPA*VPIYHWILAFIVL  88
                PNLLSIS*P KRPA*VP ++WILAFI+L
Subject  17834  PNLLSIS*PRKRPA*VPNFNWILAFIIL  17917

Range 7: 17708 to 17836 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 30/43(70%) 0/43(0%) Minus/Plus
Query       90  IMTTLL*FRSQFEVR*LNSTSRFNTLMFVKLVRKVDSSIVVA*  218
                +  +LL* R  FEVR*LN TSRFNTL+FVKLVRKVDS I++ *
Subject  17708  VRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV*  17836

Range 8: 17833 to 17919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 26/29(90%) 0/29(0%) Minus/Plus
Query        3  IVQ*TPKSNGKLGPRRASYEANLSTIS*V  89
                IV *TPKSN  LGPRRASYEANLSTIS*V
Subject  17833  IV**TPKSN*SLGPRRASYEANLSTIS*V  17919

Range 9: 17721 to 17846 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/42(67%) 0/42(0%) Plus/Minus
Query       80  IVLSTLLQYYYRLYGLILQTSEC*TVR*SLVILPRTAT*TTK  205
                +  + L+ Y+YRLYGLILQ SE *TVR*SLVILPR  T +TK
Subject  17721  VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTK  17846

Range 10: 17832 to 17918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 26/29(90%) 0/29(0%) Plus/Minus
Query        4  T*LIVDKLAS*EARLGPNLPLDFGVYCTI  90
                T*LIVDKLAS*EARLGP L LDFGVY TI
Subject  17832  T*LIVDKLAS*EARLGPKL*LDFGVYYTI  17918

Range 11: 17676 to 17825 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 33/50(66%) 0/50(0%) Minus/Plus
Query      101  KGNKNILLVEK**LLFCSLGRSSR*DD*TLPHGLTL*CL*N*SVKSIVVL  250
                K N+ I LV      FC +G  SR*DD*TLPHGL L* L*N*SVKSIV+L
Subject  17676  KKNEIIRLVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVIL  17825

Range 12: 17835 to 17918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 23/28(82%) 0/28(0%) Minus/Plus
Query        4  STINAKIQW*IGT*AGLL*G*LIDNKLG  87
                S INAKIQ   GT*AGLL G*LIDNKLG
Subject  17835  SIINAKIQLKFGT*AGLLRG*LIDNKLG  17918

Range 13: 6689 to 6754 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 21/22(95%) 0/22(0%) Plus/Plus
Query      279  LH*TTAYTCWFVETHTLTGLCR  344
                +H*TTAYTCWFVETHTLTGLCR
Subject   6689  IH*TTAYTCWFVETHTLTGLCR  6754

Range 14: 6697 to 6753 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 19/19(100%) 0/19(0%) Plus/Plus
Query      287  NNRIYLLVCRDTHAHWFMP  343
                NNRIYLLVCRDTHAHWFMP
Subject   6697  NNRIYLLVCRDTHAHWFMP  6753

Range 15: 6686 to 6754 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 22/23(96%) 0/23(0%) Minus/Minus
Query      276  AA*TSERVCLDKPTSICGCLVKR  344
                AA*TSERVCLDKPTSICGCLV R
Subject   6686  AA*TSERVCLDKPTSICGCLVNR  6754

Range 16: 6690 to 6755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 22/22(100%) 0/22(0%) Plus/Plus
Query      280  FTKQPHILVGLSRHTRSLVYAA  345
                FTKQPHILVGLSRHTRSLVYAA
Subject   6690  FTKQPHILVGLSRHTRSLVYAA  6755

Range 17: 6690 to 6755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 22/22(100%) 0/22(0%) Minus/Minus
Query      280  SGINQ*ACVSRQTNKYMRLFSE  345
                SGINQ*ACVSRQTNKYMRLFSE
Subject   6690  SGINQ*ACVSRQTNKYMRLFSE  6755

Range 18: 6691 to 6753 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 21/21(100%) 0/21(0%) Minus/Minus
Query      281  RHKPVSVCVSTNQQVYAVV**  343
                RHKPVSVCVSTNQQVYAVV**
Subject   6691  RHKPVSVCVSTNQQVYAVV**  6753

Nucleotide Sequence (426 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
426

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
298.0 1601.3 25% 3.131e-80 84% NC_004667
59.7 127.4 11% 1.666e-08 50% NC_022072
45.1 45.1 5% 0.000432 73% NC_009992
45.1 45.1 4% 0.000432 89% NC_010178

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 9752 to 10171 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
298.0 bits(644) 0.0 128/140(91%) 0/140(0%) Plus/Minus
Query        3  PATGVQPLTPDGEKQIVLKVVPKSIPTSISN*KRNHTVLRPVLMVELCCNLGTTNVITSNRIITKTKSTTNNSIACLKSSINNYAYFNIKSRYYLRSARRSFTWRLPLFLF*GELVLFQSRTKTYLCRY*TSPSADKRTQ  422
                PATGVQPLTPDGEKQIVLKVVPKSIPTSISN*+RNHTVLRPVLMVELCCNLGTTNV TS+RIITKTKSTT+NSIACLKSSIN YAYFNIKSRYYLRSARRSF WRLP FLF*GELVL QSR KTYLCR+*TS SAD+RTQ
Subject   9752  PATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVRTSSRIITKTKSTTSNSIACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQ  10171

Range 2: 9750 to 10172 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
279.2 bits(603) 0.0 123/141(87%) 0/141(0%) Plus/Minus
Query        2  TSYRSTTTDPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRXXXXXXXHKDEIDHQQQYCLFKIIHKQLRLLQYKITILPSLSTKIIHVAPSPISLLRRTCSIPISHENLFMSLLNLA*RR*THST  424
                T +RSTT DPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+R NQQQN H+D+ID+ QQYCLFKIIHKQ+RLLQYKITILPSLSTK+I VAPSPISLLRRT SIPIS +NLFMS LNL *RR*THST
Subject   9750  TGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV*RR*THST  10172

Range 3: 9751 to 10173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
274.2 bits(592) 0.0 119/141(84%) 0/141(0%) Plus/Minus
Query        1  YQLQEYNH*PQMGKSRLC*KWFQNLYLLPYLTKRGITLS*DLY*WWSFAVTSGRQT**PATE*SQRRNRPPTTVLPV*NHP*TTTLTSI*NHDITFAQHEDHSRGAFPYFSFKANLFYSNLARKPIYVATKPRLAPINALN  423
                Y+ QEYN *PQMGKSRLC*KWFQNLYLLPYLTK GITLS*DLY*WWSFAVTSGR+T* PA E S+R+NR   TVLPV*NHP*T T TSI*NHD TFAQHE HSRGAFP FSFKAN FY NLA+KPIYVATKPRLAP+NALN
Subject   9751  YRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVLPV*NHP*TNTPTSI*NHDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALN  10173

Range 4: 9751 to 10149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.5 bits(560) 0.0 115/133(86%) 0/133(0%) Minus/Plus
Query       25  VECVYRR*ARFSSDINRFSCEIGIEQVRLKREIGEGAT*MIFVLSEGNIVILY*SKRSCLWMILNRQYCCWWSISSL*LFCCWLLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGS  423
                VECV+RR* RFS DINRF  EIGIE+VRLKREIGEGAT M FVLSEG+IVILY*S+R CLWMILNRQYCC  SI S * FCCW LR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGS
Subject   9751  VECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGS  10149

Range 5: 9968 to 10165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 58/66(88%) 0/66(0%) Minus/Plus
Query        9  RFRLCDYSVAGYYVCRPEVTAKLHH*YRS*DSVIPLLVRYGSRYRFWNHFQHNLLFPIWGQWLYSC  206
                RF L D S AG YV RPEVTAKLHH*YRS*DSVIP LVRYGSRYRFWNHFQHNLLFPIWGQ LYSC
Subject   9968  RFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSC  10165

Range 6: 9753 to 9950 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 59/66(89%) 0/66(0%) Minus/Plus
Query      224  *VRLSALGEV**RHK*VFVRDWNRTSSP*KRNRGRRHVNDLRAERR*YRDFILK*A*LFMDDFKQA  421
                *VR SAL EV* RHK*VF RDW+RTSSP*KRNRGRRH NDLRAERR*YRDFILK*A LFMDDFKQA
Subject   9753  *VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA  9950

Range 7: 10017 to 10172 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 51/52(98%) 0/52(0%) Minus/Plus
Query        2  PRLQQSSTINTGLRTV*FLF*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG  157
                PRLQQSSTINTGLRTV*FL *LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG
Subject  10017  PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG  10172

Range 8: 9752 to 9916 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 49/55(89%) 0/55(0%) Minus/Plus
Query      258  LSAFIGARRGLVAT*IGFRARLE*NKFALKEK*GKAPRE*SSC*AKVIS*FYIEV  422
                LSAFIGARRGLVAT*IGF ARL *N+FALKEK GKAPRE* SC*AKV+S*FYIEV
Subject   9752  LSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEV  9916

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 11048 to 11140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 22/31(71%) 0/31(0%) Minus/Plus
Query        2  LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG  94
                + M+VGIDFGTTFST+C+S SG  GCT VAG
Subject  11048  IPMDVGIDFGTTFSTLCYSASGAGGCTRVAG  11140

Range 2: 11053 to 11139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/29(69%) 0/29(0%) Plus/Minus
Query        3  PATGVQPLTPDGEKQIVLKVVPKSIPTSI  89
                PAT VQP  PD E   VL VVPKS+PTSI
Subject  11053  PATLVQPPAPDAE*HRVLNVVPKSMPTSI  11139

Range 3: 10932 to 10985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/18(50%) 0/18(0%) Plus/Minus
Query      141  LCCNLGTTNVITSNRIIT  194
                + C  GTTN ITS   +T
Subject  10932  VACKRGTTNAITSKNKMT  10985

Plum bark necrosis and stem pitting-associated virus, complete genome

Sequence ID: Length: 14214 Number of Matches: 1

Range 1: 9061 to 9126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 16/22(73%) 0/22(0%) Minus/Plus
Query       23  MEVGIDFGTTFSTICFSPSGVS  88
                ME+GIDFGTTFS++CFSP+  S
Subject   9061  MELGIDFGTTFSSVCFSPANKS  9126

Pineapple mealybug wilt-associated virus 1, complete genome

Sequence ID: Length: 13071 Number of Matches: 1

Range 1: 8268 to 8321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 16/18(89%) 0/18(0%) Minus/Plus
Query       35  MEVGIDFGTTFSTICFSP  88
                MEVGIDFGTT+ST+CFSP
Subject   8268  MEVGIDFGTTYSTLCFSP  8321

Nucleotide Sequence (954 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
96
192
288
384
480
576
672
768
864
954

Descriptions

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 14

Range 1: 13245 to 14192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
672.3 bits(1461) 0.0 300/316(95%) 0/316(0%) Plus/Plus
Query        6  CGFC*VDAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFXXXXXXXXXQEPPKQPTTQVVEPPEADIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDDTTTKTKFFLYVMQIACXXXXXXXXXXKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ  953
                CGFC*V+AMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFATAALATAAQEPP+QP  QV EP E DIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDL GVTHKPKVINEPGKVSVEVAMKIN AL+ELCKKVMG+DD  TKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPT ITATLNGKLVMNEKVMAQHGVPPKFFPY IDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ
Subject  13245  CGFC*VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFATAALATAAQEPPRQPPAQVAEPQETDIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDLAGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ  14192

Range 2: 13241 to 13825 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
400.6 bits(868) 0.0 179/195(92%) 0/195(0%) Minus/Minus
Query        2  EDDVKNVQAICITYKKNFVLVVVSSEPITFLHSSTNAVLIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKNLSGSFSKTSLFGVRVSDSGTTPISASGGSTTCVVGCLGGSCXXXXXXXXANTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLRLFSGTTSYICPNFSSNAIASTQQKPHS  586
                EDDVKNVQAICITYKKN VLV  SS PITFLHSS NA LIFIATSTDTFPGSLITFGLWVTP KSKAIPLPIVFKNLSGSFSKT+LFGVRVSDSGTTPIS S GS TC  GCLGGSCAAVAKAAVANTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTL+LFSGTTSYICPNFSSNAIA TQQKPH+
Subject  13241  EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPAKSKAIPLPIVFKNLSGSFSKTNLFGVRVSDSGTTPISVSCGSATCAGGCLGGSCAAVAKAAVANTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAFTQQKPHT  13825

Range 3: 13865 to 14191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.0 bits(559) 0.0 105/109(96%) 0/109(0%) Minus/Minus
Query      626  WKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  952
                WKTLCKVLSAVTVLFLNACCLAKFHA+IASLLNRSYVGRTQSI YGKNFGGTPCCA+TFSFITSLPFRVAV+KVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP
Subject  13865  WKTLCKVLSAVTVLFLNACCLAKFHANIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  14191

Range 4: 13506 to 14192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
478.1 bits(1037) 0.0 193/229(84%) 0/229(0%) Minus/Minus
Query      267  LEDVV*GVIGRHRLISKRLLPS*IPC*YCVVIEQIVRRTNAVNRVRKEFRWYSMLCHDLFIHHQFTIQGRRDQGWREVC*ILPYRVFVTR*SGSLFNAIVYPHRIYLLSIVRFYVVELFELRRRRCKERASDLHHVQEEFCLGCCVIGAHNLLTQLYQCGINLHCYLY*YFSRLVNNFRFMGNPR*VQSYPLTHSL*ELVWIFLKNQLIWCKSLRFRHHPYIGFWWFHH  953
                LEDVV*GVIGR+RL+SKRLL S*IPC*YCVV+EQIVRRTNAV RVRKEFRWYSMLCH+L +HH FTIQGRRD+GW EV *ILPYRVF+TR S SLFNAI+YPHRIYLLSI+ FYVV+LFELRRRRCKERAS+LHHVQEEFCL CCVIGAHNLLTQL+QCGINLHC+LY*YF  LVNNFRF+GN R VQSY L HSL ELVWIFL+NQLIWC+SLRFRH+PYIGF WF H
Subject  13506  LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCGINLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELVWIFLENQLIWCESLRFRHYPYIGFLWFRH  14192

Range 5: 13248 to 13451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 56/68(82%) 0/68(0%) Minus/Minus
Query        9  GEYVLFRHYSDSC*LRLRPVLNVF*ETRLTKLSLCRIPYSNSQIVFGDNFIYLP*FQFKRHRVHSTKT  212
                GEYV F HY DS * RL PVLNV *ETRLTK SLCRIP+SNSQI+FGD+FIYLP*FQFK HRVHSTKT
Subject  13248  GEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPHSNSQIIFGDDFIYLP*FQFKCHRVHSTKT  13451

Range 6: 13864 to 14193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.6 bits(449) 0.0 95/110(86%) 0/110(0%) Plus/Plus
Query      625  MERRYMRCGYTIALNKLPLQRVTKTR*GSI*HTSRQP*SRRP*MVNW**MKRSWHSMEYHRNSFRTRLTAFVRRTICSITTQY*HGI*LGSRRLEIRR*RPITPYTTSSN  954
                MERRYMRCGY IALNKL L+RV KTR*GSI* TS QP SRRP*MVN ** +R WHSMEYHRNSFRTR TAFVRRTICS TTQY*HGI*L SRRLE RR*RPITPYTTSSN
Subject  13864  MERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSN  14193

Range 7: 13504 to 13794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 80/97(82%) 0/97(0%) Plus/Plus
Query      265  KWWNHQKPI*GWCRNLRLLHQISWFLRKIQTSS*RLWVRG*LWT*RGLPINRKLLTSREKYQ*R*Q*RLIPHW*SCVRRLWAPMTQQPRQNSSCT*C  555
                KW NH+KPI*G CRNLRL HQISWF RKIQTSS*RLW R *LWT R LP NRKLLTS+ KYQ*R Q*RL+PH  SCVRRLWAPMTQQ RQNSSCT*C
Subject  13504  KWRNHRKPI*G*CRNLRLSHQISWFSRKIQTSS*RLWARE*LWTWRELPTNRKLLTSQGKYQ*RWQ*RLMPH*WSCVRRLWAPMTQQLRQNSSCT*C  13794

Range 8: 13240 to 13452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.7 bits(257) 0.0 56/71(79%) 0/71(0%) Plus/Plus
Query        1  LSAVFVEWTRWRLN*N*GRYMKLSPKTI*ELE*GMRHKESLVRRVS*NTLRTGRRRS*QESL*CRKSTYSP  213
                L  VFVE TRW LN*N*GRYMK SPK I*ELE GMRHKE+LVRRVS*+TLRTG RR+*+ES *C K+TYSP
Subject  13240  LCVVFVE*TRWHLN*N*GRYMKSSPKII*ELEWGMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSP  13452

Range 9: 13244 to 14050 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
430.9 bits(934) 0.0 212/269(79%) 0/269(0%) Plus/Plus
Query        5  VRFLLSGRDGV*TEIRADI*SCPRKQSES*SRGCGTRKV**GEFLKIR*GRDAGGVNRNRCSAGKVRIRHSSFSYSGTGAT*AADNXXXXXXXXXXXXXXXI*DSYTK*AGF*ERSRQVLKDYG*GDSFGLNGGYP*TESY*RAGKSISRGSNED*YRIGRAV*EGYGLR*HNNQDKILLVRDADRLHVLYIVFDGVQRVRLHRNGRWKEDICGVGIRLH*TSCRFNGLRKPGKAVSSILHANLDHGDPEW*TGDE*KGHGTAWSTTEI  811
                V FLLS RDG+*TEIRADI*S PRK  ES*S GCGTRK+**GEFLK+R*GRD GG+N NR SA K+RIRHSSF YSG GAT*AA +ASGGTT +RYRG AGI*DS+TK* GF ERSRQVL+DYG G+SFGL G YP TESY*RA +SISRG NED* RI  AV*EGYG R* +N D+ILLVRDAD LHVLYIVFDGVQRV LHRN  WKEDICGVGI LH*TSC F+GL KPGKAVSS+LH NL HGDPEW*T DE +G+GTAWSTTEI
Subject  13244  VWFLLSERDGI*TEIRADI*SRPRK*FES*SGGCGTRKI**GEFLKVR*GRDTGGINGNRRSARKIRIRHSSFGYSGAGAT*AATSASGGTTGNRYRGSAGI*DSHTK*VGFRERSRQVLEDYGQGNSFGLGGSYPQTESY*RARESISRGGNED*CRIDGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEI  14050

Range 10: 14108 to 14191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 24/28(86%) 0/28(0%) Plus/Plus
Query      869  NTSMEFS*AAGV*K*DGDGR*HLTQRLP  952
                N SMEFS* AGV*K DG+GR*HLTQRLP
Subject  14108  NISMEFS*TAGV*KQDGNGR*HLTQRLP  14191

Range 11: 13702 to 14193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.1 bits(642) 0.0 137/164(84%) 0/164(0%) Minus/Minus
Query      463  VGRRCVRCYRPSPSYF*TPAA*LNSMLVLRRY*TDRTSDERSQSRTERISVVLHAVP*PFHSSPVYHSGSP*SRLA*SMLDTALPGFRNPLKRQLV*CNRIPTPHISSFHRPFLCSRTL*TPSKTM*RTCKRSASRTRRILSWLLCHRSP*PSYTALPMRY*SS  954
                VGRRCVRCYRP PS F*TPA *LNSML+LRR *TDRTSDERS S TERISVVLHAVP*P  SS VYHSGSP* RL *S LDTALPGF NP K+QLV*CN IPTPHISSFH  FLCS+TL*TPSKTM*RTCK+SASRTRRILS LL HR P*PSYTA  MR+*SS
Subject  13702  VGRRCVRCYRPLPSCF*TPAV*LNSMLILRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQSASRTRRILS*LLRHRRP*PSYTAPSMRH*SS  14193

Range 12: 13240 to 13452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 56/71(79%) 0/71(0%) Minus/Minus
Query        1  WRIRTFPALQRFLLTPPASRP*RILRNSPY*TFLVPHPLL*LSDCFRGQLHISALISVQTPSRPLNKNRTQ  213
                WRIR F AL+RF L PP SRP*R LRNSPY* FLVPHP L*LS+ FRG+LHISALISVQ PSR LNKN TQ
Subject  13240  WRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPPL*LSNYFRGRLHISALISVQMPSRSLNKNHTQ  13452

Range 13: 13546 to 13602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 17/19(89%) 0/19(0%) Minus/Minus
Query      307  RTCLDLSQKPAYLV*ESQI  363
                RTCLDLS+KP YLV*ESQI
Subject  13546  RTCLDLSRKPTYLV*ESQI  13602

Range 14: 15437 to 15571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 18/45(40%) 0/45(0%) Plus/Plus
Query      696  NPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAID  830
                N VR ++ YF  T IT  +  K+      +A+HGVP +F PY  D
Subject  15437  NTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFD  15571

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 9

Range 1: 14445 to 15110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
314.0 bits(679) 0.0 135/222(61%) 0/222(0%) Plus/Plus
Query      288  DIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDDTTTKTKFFLYVMQIACXXXXXXXXXXKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ  953
                D+ V P SE     + V EKDP KFL  M K   L++     KPKV+ EPG +S EVA K+N  L  LC+K++G++D  T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY   V++ IK A  STGYENPVRQYLA+FTPT++TA LNGKL  NEKVMAQHGVPPKFF Y +DCVRP+Y+LFNN AILAWNLAR++AF++KT ++DNTLHNV+Q
Subject  14445  DVRVDPNSEARPGGRPVVEKDPSKFLDMMSKNTILEIGDNAFKPKVVAEPGMLSQEVANKVNAELKVLCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDCVRPSYNLFNNSAILAWNLARREAFKSKTASSDNTLHNVYQ  15110

Range 2: 14217 to 14390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 19/58(33%) 0/58(0%) Plus/Plus
Query       36  FELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  209
                F++K+  +YEV+ ENN +V         +S    L+Y+KD T AE      +P   +F
Subject  14217  FKVKVNGLYEVINENNRKVVALPRQGDSYSTTELLRYIKDATPAEQGTYRELPANTIF  14390

Range 3: 14783 to 15109 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 61/109(56%) 0/109(0%) Minus/Minus
Query      626  WKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  952
                W TLC VLS   VL LNA  LAKFHA IA LLN+   G TQS    KN GGTPC A+TFS   SLP  +AV  VGV +ARY  TGFS PV+  AC +   T +  IF P
Subject  14783  WYTLCSVLSDDAVLDLNASLLAKFHARIALLLNKL*EGLTQSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP  15109

Range 4: 14453 to 14737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 36/95(38%) 0/95(0%) Minus/Minus
Query      296  DVKNVQAICITYKKNFVLVVVSSEPITFLHSSTNAVLIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKNLSGSFSKTSLFGVRVSDSGTT  580
                DV NV AIC   +  FV V  S  P  F HS+ ++     ATS  + PGS  T GL      S+ +   I+ KN  GSFS T       S+ G+T
Subject  14453  DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFSSAFTLFATSWLSMPGSATTLGLKALSPISRIVFFDIMSKNFEGSFSTTGRPPGLASELGST  14737

Range 5: 14898 to 15110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 31/71(44%) 0/71(0%) Minus/Minus
Query      741  LEDVV*GVIGRHRLISKRLLPS*IPC*YCVVIEQIVRRTNAVNRVRKEFRWYSMLCHDLFIHHQFTIQGRR  953
                L  VV* +I R  L  +   P *IPC    VIE +VRR  A+  V KE RWYS+L H L +    T++  R
Subject  14898  LVHVV*RII*RRCLRLECFPPC*IPCQNSTVIE*VVRRPYAIQCVGKELRWYSVLSHHLLVRS*LTVKHSR  15110

Range 6: 14646 to 14870 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 23/75(31%) 0/75(0%) Minus/Minus
Query      489  ILPYRVFVTR*SGSLFNAIVYPHRIYLLSIVRFYVVELFELRRRRCKERASDLHHVQEEFCLGCCVIGAHNLLTQ  713
                IL   V V     S+F  + +   + L +I    VVELF   R R  ER   L +   E      ++ +  LLTQ
Subject  14646  ILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ  14870

Range 7: 14932 to 15102 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 23/57(40%) 0/57(0%) Plus/Plus
Query      775  KRSWHSMEYHRNSFRTRLTAFVRRTICSITTQY*HGI*LGSRRLEIRR*RPITPYTT  945
                +R W + EYH +S  T   A    T  SIT  + HGI* G +   +R+ R I  YTT
Subject  14932  RR*WLNTEYHLSSLPTHWIA*GLLTTYSITVLFWHGI*QGGKHSSLRQRRQIIRYTT  15102

Range 8: 14681 to 14884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 20/68(29%) 0/68(0%) Plus/Plus
Query      524  NQDKILLVRDADRLHVLYIVFDGVQRVRLHRNGRWKEDICGVGIRLH*TSCRFNGLRKPGKAVSSILH  727
                N D++     AD   VL++    +QRVRL  +  W +D+   G+  + T  R   +R+P  +VS +++
Subject  14681  NSDELRSTNFADGSDVLHV*VFRIQRVRLPGDS*W*KDLRRRGV*HNKTRLRVYRVREPSSSVSGVVY  14884

Range 9: 16336 to 16548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 24/71(34%) 0/71(0%) Plus/Plus
Query      696  NPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFR  908
                N VR Y+ Y+  T ++  L+GKL       A+HGVP +F P+  D        +  D + A  LA   A R
Subject  16336  NKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIR  16548

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 4

Range 1: 13700 to 13993 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 45/98(46%) 0/98(0%) Plus/Plus
Query      651  VYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHN  944
                V   + + A  + +ENP+RQY   F+ T +   LNGKL  NEKV  QHGVP +F PY  D  RP+Y  F+NDAI AW LA + AF  K+    + L N
Subject  13700  VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESAFGRKSNVTSSVLRN  13993

Range 2: 13478 to 13603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 19/42(45%) 0/42(0%) Plus/Plus
Query      435  PGKVSVEVAMKINTALVELCKKVMGSDDTTTKTKFFLYVMQI  560
                PG V+  VA  I+T L  LC +VMG+ D  + T FFL ++Q+
Subject  13478  PGLVTPAVATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQL  13603

Range 3: 15231 to 15398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 25/56(45%) 0/56(0%) Plus/Plus
Query      663  IKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAID  830
                I+ +   + YENPVRQY+ +F+ T I+   +G +V N  VMA+HGV  +F PY  D
Subject  15231  IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD  15398

Range 4: 13741 to 13953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 31/71(44%) 0/71(0%) Minus/Minus
Query      692  NACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS  904
                NA   A  HA +ASLLN    G  +S  YG+N  GTPCC  TFSF  + PF +    V      Y   GFS
Subject  13741  NADSAANCHALMASLLN*E*DGLQKSKVYGRNLLGTPCCIATFSFGLNFPFNIKCTAVAENNLAY*RIGFS  13953

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 13986 to 14279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 43/98(44%) 0/98(0%) Plus/Plus
Query      651  VYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHN  944
                +Y  I+ A +   YENPVRQY   F+P++I+A+  GK+  N+KV+AQHGV  +F  Y +D +RP+Y  +N   I AW LA+++AF     +   TLHN
Subject  13986  LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLAQREAFSAVASSNATTLHN  14279

Range 2: 14024 to 14278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 33/85(39%) 0/85(0%) Minus/Minus
Query      689  LCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS*  943
                LCKV++      L A   A   A I   L  + +G + S  Y      TPCCA TF F   LP  +A+I +G  + +YC TGFS*
Subject  14024  LCKVVALELATALKASR*ANCQARICLTL*YA*LGLSTSKQYEAKRFTTPCCAKTF*FGLILPTELALIILGENFRQYCRTGFS*  14278

Range 3: 15476 to 15700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 23/75(31%) 0/75(0%) Plus/Plus
Query      690  YENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNK  914
                Y N +R+Y+ +++ T I+    G +  N    A HGV   + PY  D V         D  +A  LA+  A +NK
Subject  15476  YSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNK  15700

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 1

Range 1: 12579 to 12818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 33/80(41%) 0/80(0%) Plus/Plus
Query      663  IKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQA  902
                +  + A+ GYEN +RQ+   FT  ++    +GKL +N K+ A HGVPP ++PY+ DC+     LF  DA LA  LA+  A
Subject  12579  LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDARLFGYDASLAAELAKMVA  12818

Nucleotide Sequence (334 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
334

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
254.5 1403.2 27% 2.736e-67 90% NC_004667
168.8 277.5 32% 1.675e-41 56% NC_022072
115.2 180.8 54% 2.304e-25 44% NC_029783
99.1 159.3 25% 1.549e-20 51% NC_016509
81.3 195.8 24% 1.584e-16 39% NC_001836

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 7

Range 1: 10592 to 10924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
254.5 bits(549) 0.0 108/111(97%) 0/111(0%) Plus/Minus
Query        1  TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDTFPLIFCLITSTIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTP  333
                TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASD FPLIFCLITSTIALSISLPPKKLSPTEKMTH+IFPFFLTNETSK PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTP
Subject  10592  TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTP  10924

Range 2: 10593 to 10922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.9 bits(539) 0.0 108/110(98%) 0/110(0%) Minus/Plus
Query        3  GVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  332
                GVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG FDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGK SDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG
Subject  10593  GVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  10922

Range 3: 10592 to 10924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 102/111(92%) 0/111(0%) Minus/Plus
Query        1  RCC*RTDSRSPLFLS*VASRRPIISGFRLWGRSFRRLIR*EEGKYIMRHLFSGR*FLGW*RY**SYCGSYQAKDQRKSV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC  333
                RCC*RTD RSPLFLS*VASRRPIISGF  WGR FRRLIR*EEGKY MRHLFSG *FLGW*RY**SY GSYQ KDQRK V*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC
Subject  10592  RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC  10924

Range 4: 10593 to 10922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.3 bits(494) 0.0 101/110(92%) 0/110(0%) Plus/Minus
Query        3  TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRHFSFDLLLDNFHNSSINISTTQEIIAH*KDDA*YISLLLNE*DVESSSPKVENR***VFYSRLS*GIEGCGCRFVNNT  332
                TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIR  SFDLL DNFH+SSINISTTQEII H*KDDA*YISLLLNE*DVES SPK++NR***VFYSRLS*GIEGCG RFVNNT
Subject  10593  TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNT  10922

Range 5: 10591 to 10923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.3 bits(494) 0.0 102/111(92%) 0/111(0%) Minus/Plus
Query        2  EVLLTNRQPQPSIP*LSRE*KTYY*RFSTLGEELSTSHSLRRREIYYASSFQWAIISWVVEILIELLWKLSSKRSKEKCLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV  334
                EVLLTNR+PQPSIP*LSRE*KTYY*RF  LGE LSTSHSLRRREIYYASSFQW IISWVVEILIEL WKLS+KRSKE+ LMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV
Subject  10591  EVLLTNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV  10923

Range 6: 10591 to 10767 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.7 bits(257) 0.0 53/59(90%) 0/59(0%) Plus/Minus
Query      158  HPRNYRPLKR*RIIYFPSS*RMRRRKLLPQSRKPLIIGLLLAT*LRNRGLRLSVR*QHL  334
                HPRNY PLKR*RI+YFPSS*RMRRRK LPQ++KPLIIGLLLAT*LRNRGLR SVR*QHL
Subject  10591  HPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL  10767

Range 7: 10801 to 10923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 39/41(95%) 0/41(0%) Plus/Minus
Query        2  HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTLFL*SFA*  124
                HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQT FL*SF *
Subject  10801  HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV*  10923

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 11564 to 11890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 67/109(61%) 0/109(0%) Minus/Plus
Query        3  VVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  329
                ++NEPTAAALYSLAKS ++D+L+AVFDFGGG FDVSFVKKKG+IL V++S GDNFLGGRDID A+   +K+K+ G V   KL  FVS++KED+SN+ ++  H++P   G
Subject  11564  IINEPTAAALYSLAKSGLDDMLIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKG  11890

Range 2: 11572 to 11889 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 59/106(56%) 0/106(0%) Plus/Minus
Query        4  PPSTGIRCCVIALLLDKSSFIEDTNIPNLASDTFPLIFCLITSTIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGS  321
                P   G  C      LD SS I DT   +L   T P  F L     A SISLPPKKLSP E  T  I PFFLT +TSK PPPKSKTA N SS+ DLA E +AAAVGS
Subject  11572  PFIVGTICVSTLGSLDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTAINISSSPDLASEYKAAAVGS  11889

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 10793 to 11119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.2 bits(245) 0.0 48/109(44%) 0/109(0%) Minus/Plus
Query        3  VVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  329
                +VNEPTAA L  ++ S  ++ +  VFDFGGG FD+S + K+G +L VI + GDN+LGGRD+D  I++ I   ++     +   I VS MKE +S+  A T+ +IP+E G
Subject  10793  LVNEPTAAGLLGMSVSSNDNTVYGVFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG  11119

Range 2: 10792 to 11001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 35/70(50%) 0/70(0%) Plus/Minus
Query      121  LITSTIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGSLTT  330
                LI   I  S SLPP+ LSP+  +T N FP F   E SK PPPKSKT     S  D       AAVGSLT+
Subject  10792  LIVFIIFASTSLPPR*LSPSAPITPNTFPLFNIIEMSKVPPPKSKTPYTVLSLLDTLIPNNPAAVGSLTS  11001

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 10375 to 10590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 38/72(53%) 0/72(0%) Minus/Plus
Query      114  VVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK  329
                ++NEPT+AALY   +        AVFDFGGG  D+SF+ +  N++ V+FS GDNFLGGRDIDRAIV+ ++++
Subject  10375  LINEPTSAALYGAVRGGALKETYAVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE  10590

Range 2: 10383 to 10571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 32/63(51%) 0/63(0%) Plus/Minus
Query      133  TIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGS  321
                TIALS+S PP+KLSP E  T         N+ SK PPPKSKTA    S   L    +AA VGS
Subject  10383  TIALSMSRPPRKLSPFENSTLTTLLNLDMNDISKVPPPKSKTAYVSFSAPPLTAPYKAADVGS  10571

Little cherry virus 1, complete genome

Sequence ID: Length: 16934 Number of Matches: 4

Range 1: 9179 to 9394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 34/72(47%) 0/72(0%) Minus/Plus
Query       42  VFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNN  257
                VFDFGGG FDVS++KK G I+ +I + GD FLGGRDID+A+ E I QK      D  +     ++   +S N
Subject   9179  VFDFGGGTFDVSYIKKHGKIVSIIDTAGDLFLGGRDIDKALAEFISQKTGHSCDDLFINHLKETVTPGVSKN  9394

Range 2: 9110 to 9148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 7/13(54%) 0/13(0%) Minus/Plus
Query      291  VVNEPTAAALYSL  329
                ++NEP+AAA++ L
Subject   9110  IINEPSAAAMHQL  9148

Range 3: 9178 to 9324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 28/49(57%) 0/49(0%) Plus/Minus
Query      112  IFCLITSTIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKT  258
                +FC I S  ALS+SLPP+  SP   +   IFP FL  +TSK PPPKSKT
Subject   9178  VFCEINSAKALSMSLPPRNKSPAVSIMLTIFPCFLIYDTSKVPPPKSKT  9324

Range 4: 13101 to 13208 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 14/36(39%) 0/36(0%) Plus/Minus
Query       10  STGIRCCVIALLLDKSSFIEDTNIPNLASDTFPLIF  117
                S  +   V+A   D SS +       +ASDTFPL+F
Subject  13101  SVSVA*SVLAS*TDCSSKVICALCIGVASDTFPLLF  13208

Nucleotide Sequence (673 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 47 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
68
136
204
272
340
408
476
544
612
673

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
467.1 2702.3 34% 7.409e-131 79% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 14

Range 1: 8498 to 9115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
467.1 bits(1013) 0.0 199/206(97%) 0/206(0%) Plus/Plus
Query        1  VFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*G*YRWHSFLKWVLKTQFFNLCVLFVLFTP*G*DRWNMYSRGFFFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHAALCVRRACIWASALGQRRSGD*QP  618
                VFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP* *YRWHSF KWVLKT+ F LCVLFVLFTP*G DRWNMYSRG FFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHAALCVRRACIWASALGQRRSGD*QP
Subject   8498  VFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFSKWVLKTKIFYLCVLFVLFTP*GQDRWNMYSRGSFFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHAALCVRRACIWASALGQRRSGD*QP  9115

Range 2: 8584 to 9153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
445.5 bits(966) 0.0 183/190(96%) 0/190(0%) Minus/Minus
Query       87  YLQDLALSALRRAGC*SPDRRCPRALAQMHARLTHNAACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKKNPLLYMFHRSYPHGVNKTKSTHKLKNWVFNTHFKKECHRY*PHGWHA  656
                YLQDLALSALRRAGC*SPDRRCPRALAQMHARLTHNAACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKK+PLLYMFHRS PHGVNKTKSTHK K  VFNTHF+KECHRY* HGWHA
Subject   8584  YLQDLALSALRRAGC*SPDRRCPRALAQMHARLTHNAACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKKDPLLYMFHRSCPHGVNKTKSTHK*KILVFNTHFEKECHRY*LHGWHA  9153

Range 3: 8499 to 8540 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 14/14(100%) 0/14(0%) Minus/Minus
Query        2  PFGINLTKNRGTET  43
                PFGINLTKNRGTET
Subject   8499  PFGINLTKNRGTET  8540

Range 4: 8498 to 8980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
364.4 bits(789) 0.0 155/161(96%) 0/161(0%) Minus/Minus
Query        1  TH*TRLLYIA*KDIWHTKTKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVRSDKSRKGNPRLKEKPSTVHVPPVLSSRCEQNKKYTQIKKLGL*YPLQEGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKH  483
                TH*TRLLYIA*KDIWHT+TKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHV SDKSRKGNPRLKE+PSTVHVPPVLSSRCEQNKKYTQIK  GL*YPL+EGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKH
Subject   8498  TH*TRLLYIA*KDIWHTETKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVCSDKSRKGNPRLKERPSTVHVPPVLSSRCEQNKKYTQIKNFGL*YPLREGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKH  8980

Range 5: 9024 to 9152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 43/43(100%) 0/43(0%) Minus/Minus
Query      527  TFRT*HFQRSVEPAASHLTDAALGHSPKCMHVLRTMPHARLT*  655
                TFRT*HFQRSVEPAASHLTDAALGHSPKCMHVLRTMPHARLT*
Subject   9024  TFRT*HFQRSVEPAASHLTDAALGHSPKCMHVLRTMPHARLT*  9152

Range 6: 8499 to 8984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
323.6 bits(700) 0.0 156/162(96%) 0/162(0%) Plus/Plus
Query        2  CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS*SGY*RPNFLICVYFLFCSHREDKTGGTCTVEXXXXXXXXXXXXXXERTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLVLVCQISF*AMYRSLV*CVF  487
                CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS SGY*RP F ICVYFLFCSHREDKTGGTCTVEG SLSLGLPFLLLSE TCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLV VCQISF*AMYRSLV*CVF
Subject   8499  CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPSRSGY*RPKFFICVYFLFCSHREDKTGGTCTVEGLSLSLGLPFLLLSEHTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLVSVCQISF*AMYRSLV*CVF  8984

Range 7: 9016 to 9153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 46/46(100%) 0/46(0%) Plus/Plus
Query      519  CSCYVSRACGIVRKTCMHLGECPRAASVR*LAAGSTER*KC*VLKV  656
                CSCYVSRACGIVRKTCMHLGECPRAASVR*LAAGSTER*KC*VLKV
Subject   9016  CSCYVSRACGIVRKTCMHLGECPRAASVR*LAAGSTER*KC*VLKV  9153

Range 8: 8689 to 8961 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 88/91(97%) 0/91(0%) Plus/Plus
Query      192  RIRPVEHVQ*RVFL*VSGYPSYSCRSVHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWIWS*CAKYPFRRCT  464
                R RPVEHVQ*RVFL*VSGYPSYSCRS+HVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWIWS CAKYPFRRCT
Subject   8689  RTRPVEHVQ*RVFL*VSGYPSYSCRSIHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWIWSQCAKYPFRRCT  8961

Range 9: 8500 to 8643 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        3  VSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVRLIPVALLLEVGIKD  146
                VSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSV+LIPVALLLEVGIKD
Subject   8500  VSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKD  8643

Range 10: 9027 to 9155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 43/43(100%) 0/43(0%) Plus/Plus
Query      530  CKSCMRHCA*DVHAFGRVP*GSVGQVTSSRLYGALKVLGPEGT  658
                CKSCMRHCA*DVHAFGRVP*GSVGQVTSSRLYGALKVLGPEGT
Subject   9027  CKSCMRHCA*DVHAFGRVP*GSVGQVTSSRLYGALKVLGPEGT  9155

Range 11: 8583 to 8984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.0 bits(655) 0.0 128/134(96%) 0/134(0%) Minus/Minus
Query       86  KDTLN*TPVHRLKGYLAH*DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCTLRQE*EG*PET*RKTLYCTCSTGLILTV*TKQKVHTN*KIGSLIPTSRRSATGINLTDGTP  487
                KDTLN*TPVHRLKGYLAH*DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTC LRQE*EG*PET*RKTLYCTCSTGL+LTV*TKQKVHTN K  SLIPTSRRSATGIN TDGTP
Subject   8583  KDTLN*TPVHRLKGYLAH*DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCMLRQE*EG*PET*RKTLYCTCSTGLVLTV*TKQKVHTNKKFWSLIPTSRRSATGINFTDGTP  8984

Range 12: 9029 to 9070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 14/14(100%) 0/14(0%) Minus/Minus
Query      532  NACTSYAQCRMHDL  573
                NACTSYAQCRMHDL
Subject   9029  NACTSYAQCRMHDL  9070

Range 13: 8500 to 8538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 13/13(100%) 0/13(0%) Minus/Minus
Query        3  LRY*PHEEPRHRN  41
                LRY*PHEEPRHRN
Subject   8500  LRY*PHEEPRHRN  8538

Range 14: 9113 to 9169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 15/19(79%) 0/19(0%) Minus/Minus
Query      616  CWVCLVPSGPSTFSAP*SR  672
                C    VPSGPSTFSAP*SR
Subject   9113  CLSPTVPSGPSTFSAP*SR  9169