This html page seems to have been stripped by Galaxy.
Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.

Queries

Nucleotide Sequence (619 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
62
124
186
248
310
372
434
496
558
619

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
205.9 305.2 30% 2.804e-52 42% NC_018458
369.5 900.7 26% 1.604e-101 33% NC_003604
189.4 268.0 38% 2.591e-47 41% NC_016404
73.5 171.8 22% 9.921e-31 48% NC_003602
62.5 130.1 15% 1.617e-18 44% NC_011062

Alignments

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 3

Range 1: 2755 to 3291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.9 bits(443) 0.0 85/179(47%) 0/179(0%) Plus/Plus
Query       82  YVDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                Y ++  A++L++S + G TG+LL K+ +GK    ++ + I+ ++ FGFAGSGKS++ QT+L+     + LVISPRK L  DW  KI  R KVVTFE A +++     IV+DE+GL PPGY+DL+  +  PSTL+LLGDPLQ +Y++K D + L     ++F+R++G+LPYL YSHRL K
Subject   2755  YPNREYAEKLSESMFEGHTGILLNKFKRGKSVIKDVRKEIKFVSFFGFAGSGKSYYPQTVLQHTFGIRALVISPRKALAADWSSKIGSRAKVVTFEKAVVEEEVFSCIVVDELGLYPPGYLDLICLLHEPSTLVLLGDPLQGTYYNKDDRIKLATVSHNVFARLEGSLPYLMYSHRLSK  3291

Range 2: 2802 to 3077 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 39/92(42%) 0/92(0%) Minus/Minus
Query      129  MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP  404
                M L+  SS  A SNVTT     IF  QS+ + FLGL+T+    +   S V*  *L PDPAKPK++   I    S   + PLL      PV P
Subject   2802  MQLNTSSSTTAFSNVTTFARDPIFELQSAANAFLGLITSARMPNVCWSTV*G**LLPDPAKPKKLTNFISFLTSLITLLPLLNLFSRIPV*P  3077

Range 3: 3141 to 3284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 20/48(42%) 0/48(0%) Minus/Minus
Query      468  NLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLG  611
                +LCE  R*G+ P +L        +   LS LL*    +GSP+ +RVLG
Subject   3141  SLCEYIR*GNEPSSLANTLWLTVANFILSSLL**VPCKGSPNNTRVLG  3284

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 8

Range 1: 2730 to 3263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
369.5 bits(800) 0.0 146/178(82%) 0/178(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                VDK KADRLAQSFY+G TGVLLGKYNKGKMH+ E+EEP EVLT+FGFAGSGKSHWCQTIL+ C VEK LVISPRKVL+DDWV KISK+H+VVTFEVAFMDD+GCK IVIDEIGLLPPGY+DLVI+  +P TL+LLGDPLQS+YHSKRDNV+LEASQED+F+RV+G LPYLCYSHRLP+
Subject   2730  VDKAKADRLAQSFYNGNTGVLLGKYNKGKMHTGEIEEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLRDDWVAKISKKHRVVTFEVAFMDDYGCKDIVIDEIGLLPPGYIDLVIAAHQPRTLVLLGDPLQSTYHSKRDNVVLEASQEDVFNRVRGKLPYLCYSHRLPR  3263

Range 2: 2774 to 3259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 107/162(66%) 0/162(0%) Minus/Minus
Query      129  GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTKXXXXXXXXXXXXXTMALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP  614
                GNLCE* + GS P T  K SS LASR TLSRLL   L*RGSP  +RV G    +T+S  PGG  PISSIT++L P SSM ATS VTTLC L+IF TQSSLSTFLGL+T+ FST Q  SMV HQ*LFPDPA PK V TS GSS S  CI PLLY P  TPV P
Subject   2774  GNLCE*HKYGSFPLTRLKTSS*LASRTTLSRLLW*VL*RGSPRSTRVRG*CAAITRSMYPGGRRPISSITISLQP*SSMNATSKVTTLCFLDIFATQSSLSTFLGLITSTFSTEQCLSMVWHQ*LFPDPANPKAVRTSFGSSISPVCILPLLYLPSRTPVFP  3259

Range 3: 2730 to 3062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 40/111(36%) 0/111(0%) Minus/Minus
Query       85  LIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH  417
                L+Y+  F   ++HE  LE  H + L    +PII EH    N   FL+ T  +YGL PVTF    ++K    L   L  +RMHL+ +V  ++    S VE L + + L  VH
Subject   2730  LVYHDIFAAVVVHECHLESYHSMLLGYFCYPIISEHFPWANHKHFLHGTVFKYGLAPVTFP*SCKSKGR*NLFWLLYLARMHLAFIVLAEQNPRVSIVETLSQTVGLGFVH  3062

Range 4: 3084 to 3257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 25/58(43%) 0/58(0%) Minus/Minus
Query      439  *PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYI  612
                *P+*VA V     HP ED+LL  L DHI+ F ++  LK I+Q  Q  W      +VY+
Subject   3084  *PM*VA*VW*FPSHPIEDILLTSLQDHIVTFTVVGALKRISQEHQGAWLMCGYHKVYV  3257

Range 5: 2732 to 3073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 44/114(39%) 0/114(0%) Plus/Plus
Query       87  GQDQGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTT  428
                GQ QGR + ++ LQW H  ++ ++Q  +DA+    G  RG +  W  R+R+KSLV NHT  L   E+   *  + AQ *LG +++ EA  G  RG  HG  R+  +  R DR++
Subject   2732  GQSQGRPSGSKFLQWKHGGSARQVQ*RQDAYGRDRGAKRGSNGLWICRIREKSLVPNHT*TLFRGESACD*PKESAQR*LGSKNIQEA*SGNFRGGIHGRLRLQRYRDRRDRSS  3073

Range 6: 3133 to 3258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 19/42(45%) 0/42(0%) Plus/Plus
Query      488  WAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGY  613
                W I F+     N  M S R  KR SS+G*  ++ T ATH GY
Subject   3133  WEILFKAPTTVNVTMWSWRLVKRMSSIG*EGNYHTYATHIGY  3258

Range 7: 2704 to 3045 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 38/114(33%) 0/114(0%) Plus/Plus
Query       59  TRSGRRVTTWTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVK  400
                T S   ++ WT+ R     + ST++ + +   +T + RCI    R++ R+*  L      KVTG KPY   V  RK   L   +CS MIG  +  R   W  SR  SW  +  K
Subject   2704  TASESGISGWTKPRPTVWLKVSTMETRGFCSASTIKARCIRAR*RSQKRF*RPLDLQDQGKVTGAKPYLNTVPWRKCL*LAQGKCSEMIG*QKYPRSIEW*LSRWHSWTTTAAK  3045

Range 8: 3119 to 3262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 19/48(40%) 0/48(0%) Plus/Plus
Query      474  YSASTGRSPSEFIS*QTG*CDPRGQPRGHLL*GEGRTSLPLLLTQVTK  617
                +  + GRS S+ +   T  C P G  RG L  GE  T++ +LLT VT+
Subject   3119  HPGAPGRSSSKHLPQ*T*QCGPGG*SRGCLQSGERETTILMLLT*VTQ  3262

Actinidia virus B, complete genome

Sequence ID: Length: 7488 Number of Matches: 3

Range 1: 2699 to 3229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 88/177(50%) 0/177(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLP  615
                V + +A  L +SF  G TGV L KY K  + +      I+V   FGFAGSGKS++ QT+LR C ++ TLVI PRK LK DW  K+     V TFE AF    G + I+IDE+GLLPPGY+DLV + F+  T+LLLGDPLQS Y++K D++ LE   E +F R+ G   YL  +HRLP
Subject   2699  VTQSRAIHLLESFREGFTGVNLNKYQKRPLGTDIDNTLIDVYGLFGFAGSGKSYYPQTLLRCCNMKDTLVIVPRKALKADWSEKVKDGAIVRTFESAFNGRKGYENIIIDEVGLLPPGYIDLVHANFQYDTMLLLGDPLQSEYYNKGDSLFLEPISESVFDRLMGKKNYLYKTHRLP  3229

Range 2: 2812 to 3009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 28/66(42%) 0/66(0%) Minus/Minus
Query      198  HPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSI  395
                +P   +KA S V T+     F  QS+ S F G MT+V    Q    V   *LFP PA PK   TSI
Subject   2812  YPFLPLKALSKVLTMAPSFTFSLQSAFSAFRGTMTSVSFILQHLRRVCG**LFPLPANPKRPYTSI  3009

Range 3: 3061 to 3228 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 23/56(41%) 0/56(0%) Minus/Minus
Query      447  GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK  614
                GNLC   R*   P +     S + S+  LS LL*Y L  GSP+ S V   K   T+
Subject   3061  GNLCVL*R*FFFPISRSNTLSLIGSKNKLSPLL*YSLCSGSPNNSIVSYWKLACTR  3228

Grapevine virus B, complete genome

Sequence ID: Length: 7599 Number of Matches: 3

Range 1: 2995 to 3144 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 31/50(62%) 0/50(0%) Plus/Plus
Query      391  GCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVIL  540
                G   IVIDEIGLLPPGY+D+V   F   +LL+LGDPLQ  YHSK D+  L
Subject   2995  GYGLIVIDEIGLLPPGYIDMVHGYFCYDSLLVLGDPLQCEYHSKADHFFL  3144

Range 2: 2791 to 2979 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 31/63(49%) 0/63(0%) Plus/Plus
Query      190  EEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAF  378
                +E I+V  + GFAGSGKS + Q +L++     +LVI PRK L  DW  K+    KVVTFE AF
Subject   2791  KELIDVHLTLGFAGSGKSFYPQCVLKNSHYANSLVIVPRKALCSDWSNKVHPDVKVVTFESAF  2979

Range 3: 3151 to 3219 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 11/23(48%) 0/23(0%) Plus/Plus
Query      550  QEDIFSRVKGALPYLCYSHRLPK  618
                +E +F + KG   YL  SHRLP+
Subject   3151  EESVFKKFKGHCNYLYKSHRLPR  3219

Potato virus T, complete genome

Sequence ID: Length: 6539 Number of Matches: 3

Range 1: 2604 to 2780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 26/59(44%) 0/59(0%) Plus/Plus
Query      352  KVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRD  528
                KV+TFE           IVIDE+ L+P GY+D++I++   +T + L DPLQ+ YH+K D
Subject   2604  KVMTFEAGLRRVQKSSLIVIDELSLMPNGYLDMLINMNEEATFITLFDPLQARYHAKSD  2780

Range 2: 2487 to 2591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 16/35(46%) 0/35(0%) Plus/Plus
Query      250  CQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHK  354
                CQ +      +KTLV+SPRK L DDWV  ++  H+
Subject   2487  CQIVKSMFNNKKTLVLSPRKNLADDWVKNLANLHR  2591

Range 3: 2436 to 2504 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/23(48%) 0/23(0%) Plus/Plus
Query      202  EVLTSFGFAGSGKSHWCQTILRS  270
                E+L   GFAGSGK+     I++S
Subject   2436  EILVVAGFAGSGKTRGICQIVKS  2504

Nucleotide Sequence (465 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
465

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
327.8 748.1 24% 3.861e-89 36% NC_003604
215.1 293.1 28% 3.301e-55 42% NC_016404
230.2 395.0 23% 9.263e-60 32% NC_003602
227.0 333.4 31% 8.557e-59 46% NC_018458
109.7 309.1 47% 2.68e-36 34% NC_011106

Alignments

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 5

Range 1: 567 to 1025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
327.8 bits(709) 0.0 126/153(82%) 0/153(0%) Plus/Plus
Query        5  ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                EC+FIHDEVQYWSLDEMQRFLGSL   +RVVYSI+YP+EV+AG+ QSLFPEAYTFDLK+ RL WYPDGKAEGAYTQPVNPWLL CSKT DS+ RSWTITKLQTIGAHH+FSA+ GS+LTE++YKYDNFTIINPND+L+G+RG KPLYLRARMI
Subject    567  ECIFIHDEVQYWSLDEMQRFLGSLSKVDRVVYSIIYPSEVEAGYSQSLFPEAYTFDLKDRRLVWYPDGKAEGAYTQPVNPWLLRCSKTEDSKGRSWTITKLQTIGAHHLFSAIKGSYLTEESYKYDNFTIINPNDVLKGKRGGKPLYLRARMI  1025

Range 2: 566 to 1024 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.9 bits(406) 0.0 95/153(62%) 0/153(0%) Minus/Minus
Query        4  IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHS  462
                I+ AR+ SG  PL P   S G M+VKLSYL  SSV+ LP  ALK * AP+V SFV+V     ES+V  H S+ GFTGCV*APSA PSGYH NL S +SKV ASGNRL   PASTS GY ILYTT       P+NLCISS+LQY*TSS +N HS
Subject    566  IMRARR*SGFPPLFPFRTSLGFMIVKLSYLYDSSVK*LPFIALKR**APMVWSFVIVHDRPFESSVFEHLSSQGFTGCV*APSAFPSGYHTNLLSLRSKVYASGNRLCEYPASTSDGYMILYTTLSTLERLPKNLCISSRLQY*TSSCMNMHS  1024

Range 3: 564 to 1025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 58/154(38%) 0/154(0%) Minus/Minus
Query        2  DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHAFT  463
                DH   *++      + + IV V D EV+VLV  L Q A     ++VM    L+LC+ P S L +      EQP +H LR+GS    + VP *     +K + L +*AL    + L  V++T+H S+   E +*E LH V  PVLNL++ ++AFT
Subject    564  DHAGP*IEWFPASLSLQNIVRVYDREVIVLVRFLRQVAALYCTKEVMSSDGLELCDRP*SPLRILRF*ASEQPRVHRLRIGSFSLPVRVPY*SPVFEVKSVRLWK*AL*ISSLDL*WVYDTIHYSIDFGETT*EPLHLV*TPVLNLIMYEYAFT  1025

Range 4: 566 to 982 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 50/139(36%) 0/139(0%) Plus/Plus
Query        4  *MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG  420
                *M +++  GSILE  R+AK+ R +   + S V Y +P  GR  + +KPI  G++ * + ++++MVP      SL+A  E + A++  + G     +D +KA ++R +S L    G L D G +QVR LH H P R ++G
Subject    566  *MHIHT**GSILESRRDAKVLR*SLQSR*SSV*YHIPIRGRGWIFTKPISRGVHF*PQRQEISMVPGREG*RSLYAACEPLAAQMLKNGGFEGAIMDDHKAPNHRSSSPL*CNKGQLLDGGIVQVR*LHDHKP*RCSEG  982

Range 5: 565 to 894 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 40/110(36%) 0/110(0%) Plus/Plus
Query        3  VNACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITS  332
                VNA  +  RFNTG  T+CK S*  S    E C V  T  R      KAY +R   L  +   *+GT   + +EP R+ *  GCS   +   +  + G  QS +    ITS
Subject    565  VNAYSYMMRFNTGV*TRCKGS*VVSPKSIE*CIVSYTHQRSRLDIHKAYFQRRTLLTSKTGD*YGTRTGRLKEPIRSL*TLGCSDAQKRRIRRGDHGRSQSSKPSELITS  894

Actinidia virus B, complete genome

Sequence ID: Length: 7488 Number of Matches: 2

Range 1: 551 to 1012 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.1 bits(463) 0.0 80/154(52%) 0/154(0%) Plus/Plus
Query        2  CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                CE   IHDEVQYWSL + Q  LG +    R++YSI+YPAE+D G+  SLFPEAY F+ + G   W PDG+++GAY QP+NPWLL  SKT+DS  R+WTI K+ +  +HH+F A LGS +TED Y YD++T+I    +  GRR    +YLR+R +
Subject    551  CETAVIHDEVQYWSLQDFQLVLGQMNKVKRLMYSIIYPAEIDQGYEHSLFPEAYHFERRGGYFIWLPDGQSDGAYKQPINPWLLSTSKTIDSRGRTWTIGKVTSFASHHLFVASLGSTITEDEYTYDDYTVIPRGALSSGRRDYSGMYLRSRYV  1012

Range 2: 550 to 945 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 55/132(42%) 0/132(0%) Minus/Minus
Query        1  MMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHSQ  396
                M V  SY+  SSV  LPR A        + +F MV +   ES V    S+HG  GC+ APS  PSG  +  P   SK *ASGN     P S SAG  I Y +RF     P     S + QY TSS I   SQ
Subject    550  MTV*SSYVYSSSVMVLPRLATNRWWEAKLVTFPMVHVRPLESIVFEVLSSHGLIGCLYAPSDWPSGNQMKYPPRLSKW*ASGNNECS*PWSISAG*MIEYMSRFTLFICPSTSWKSCRDQYCTSSCITAVSQ  945

Grapevine virus B, complete genome

Sequence ID: Length: 7599 Number of Matches: 3

Range 1: 535 to 984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 91/150(61%) 0/150(0%) Plus/Plus
Query       14  FIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                FIHDEV YWSL + Q FLG L    R++YS++YPAE+  GF QSLFPEAY FDL    +TWYPDGKA+G+Y QPVNPWLL  SKTVD   ++WT+TK+ T+GAHH+F A  GS LTE+ Y YD+FT+I P  +L+GRR  K  YLR+R I
Subject    535  FIHDEVHYWSLKDFQSFLGHLGGTQRLLYSVIYPAELHIGFEQSLFPEAYEFDLLGEYITWYPDGKADGSYKQPVNPWLLTTSKTVDVHGQTWTLTKVLTMGAHHLFLATRGSTLTEEEYHYDDFTVILPKKLLQGRRRNKMPYLRSRFI  984

Range 2: 543 to 971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 73/143(51%) 0/143(0%) Minus/Minus
Query       22  RKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS  450
                RKY  L  L P    FG M VK S    SSV  LPR A K *CAP+V +FV VQ+    STVL   S+ GFTGC+* PSA PSGY V     KS  *ASGNRL   P  +SAG   LY  R      PR L  S +LQ  TSS
Subject    543  RKYGILFLLRPCRSFFGRMTVKSS**YSSSVSVLPRVAKKR*CAPMVSTFVSVQVWPCTSTVLEVVSSQGFTGCL*EPSAFPSGYQVMYSPSKSNS*ASGNRLCSKPMCSSAG*ITLYNKR*VPPRWPRKLWKSLRLQ*CTSS  971

Range 3: 534 to 854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 34/107(32%) 0/107(0%) Plus/Plus
Query       13  VYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHL  333
                +Y+ RG++LE     K PR         VQ  +P     R  ++P+PG L +*F  R  ++VP   S   L ATS+S+     *+ G     LD +++A++   S L
Subject    534  LYT*RGALLEPQGFPKFPRPPGRNSTLIVQCDLPSRATHRF*TEPVPGSL*I*FARRVHHLVP*RES*RFLQATSKSLATNNL*NCGCARPNLDTHESANHGCTSSL  854

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 2

Range 1: 565 to 987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.0 bits(489) 0.0 86/141(61%) 0/141(0%) Plus/Plus
Query        2  CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGR  424
                C+ V IHDEVQYWSL ++Q FLG+++    V+YS+VYPAE+  G   SLFPEAY F++ +G   WYPDGKAEGAY QP+NPWLL  SKT D   R+WTITKLQT+GAHH+FS   GS +TED+Y YD FT+INP +   GR
Subject    565  CDTVVIHDEVQYWSLADLQNFLGNVEDNTNVLYSVVYPAEITTGITFSLFPEAYEFEVHDGYFIWYPDGKAEGAYKQPINPWLLTTSKTEDVRYRTWTITKLQTVGAHHLFSCTPGSTITEDSYTYDQFTLINPYNCFAGR  987

Range 2: 567 to 986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 64/140(46%) 0/140(0%) Minus/Minus
Query        4  LPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHS  423
                LP     G + V  S +*+SSV   P      *CAP VCS V+VQ+L   S+VL   S+HG  GC+ APSA PSGY +  PS+ S  *ASGN     P   SAG T  Y T     + P+  C S+  QY*TSS I T S
Subject    567  LPAKQL*GFIKVNWS*V*LSSVMVEPGVHENR*CAPTVCSLVIVQVLYLTSSVLDVVSSHGLIGCLYAPSAFPSGYQMK*PSWTSNS*ASGNSENVIPVVISAG*TTEYNTFVLSSTLPKKFCRSASDQY*TSSCITTVS  986

Grapevine virus E, complete genome

Sequence ID: Length: 7564 Number of Matches: 5

Range 1: 721 to 933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 37/71(52%) 0/71(0%) Plus/Plus
Query      191  TWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINP  403
                TW PDGK  G+Y QPVNPWLL  +KT+D + R+WT+TKL+++G+HH+F    G  +TED   Y++FT+++P
Subject    721  TWMPDGKCCGSYKQPVNPWLLSTNKTMDLKGRTWTLTKLESVGSHHLFLCTPGDLVTEDEAVYNDFTLVDP  933

Range 2: 616 to 720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 15/35(43%) 0/35(0%) Plus/Plus
Query       92  VVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTW  196
                ++Y+++YPAE+ AG+  SL+PE Y F + E   T+
Subject    616  LIYTVIYPAELHAGYPFSLYPELYDFRVSEDGKTF  720

Range 3: 541 to 597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 13/19(68%) 0/19(0%) Plus/Plus
Query       11  VFIHDEVQYWSLDEMQRFL  67
                V IHDEV YW+L + QRFL
Subject    541  VIIHDEVHYWNLKDFQRFL  597

Range 4: 714 to 947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 37/78(47%) 0/78(0%) Minus/Minus
Query      184  LSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNL  417
                L  SFG   VK  Y   SSV + P    K *C P + SFV VQ+L   S VL   +NHGFTGC+* P   PSG  V +
Subject    714  LEKSFGSTSVKSLYTASSSVTRSPGVHKKR*CDPTLSSFVRVQVLPLRSMVLFVLNNHGFTGCL*EPQHFPSGIQVKV  947

Range 5: 754 to 930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/59(34%) 0/59(0%) Minus/Minus
Query      224  VNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRV  400
                V+  E+++   +L  E  +   ++VM P    LC GP+  L +HGL   + PWIH L +
Subject    754  VHQCEIIIHSLVLSDEIPRRAQKEVM*PNTF*LC*GPSPSLKIHGLVCAQ*PWIHRLLI  930

Nucleotide Sequence (342 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
342

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
147.2 499.6 22% 5.336e-35 44% NC_018458
160.1 545.3 22% 7.329e-39 47% NC_003604
144.5 456.4 20% 3.588e-34 41% NC_016404
143.1 283.6 20% 9.303e-34 39% NC_003602
128.9 435.7 20% 1.783e-29 46% NC_011106

Alignments

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 7

Range 1: 4576 to 4815 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 59/80(74%) 0/80(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHSASKHTL  331
                AFDRSQDEKILD+EVEVL FFLWPEE+I+EY  LKL M  ++G+LAIMRFSGEFGTFFFNT+ NMVF+CMRY+   K  L
Subject   4576  AFDRSQDEKILDLEVEVLKFFLWPEELIREYVELKLQMSCSMGNLAIMRFSGEFGTFFFNTMCNMVFTCMRYNVTDKTRL  4815

Range 2: 4579 to 4815 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 37/79(47%) 0/79(0%) Minus/Minus
Query       95  *SVFGCRVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK  331
                *S F C V+PHT EHHVA  VEE+  +F R+ H  Q+  + AH + +  V  +  LRP EE EHF+L ++YLL+L S++
Subject   4579  *SGFICDVIPHTCEHHVAHCVEEKRPKFPRKSHDCQVPHTAAHLEFQLHVLSNQLLRP*EEFEHFHLQVQYLLVLRSIE  4815

Range 3: 4629 to 4805 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 34/59(58%) 0/59(0%) Minus/Minus
Query      145  LDAEWYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKL  321
                L    YLI +NTML  VLKK VPNSPENL++AK P    I + + +YSLI SSG RK L
Subject   4629  LSVTLYLIHVNTMLHIVLKKNVPNSPENLMIAKFPILQLIWSFNSTYSLISSSGHRKNL  4805

Range 4: 4587 to 4790 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 30/68(44%) 0/68(0%) Plus/Plus
Query      103  ITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEV  306
                I+G ED   GG SAQ LP+A G D  +R  +  +    G  G++E+ W I ++ LQH  QHGV +YEV
Subject   4587  ISGREDIGPGGGSAQILPMAGGAD*RVRGVETPNELQYGELGNHEIFWGIWDVFLQHNVQHGVHMYEV  4790

Range 5: 4574 to 4789 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 33/72(46%) 0/72(0%) Minus/Minus
Query       90  TSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  305
                TSY *TPCC+ C*R+  +I Q+ S  P+ P          R  *S P A GR *AL PP  +SS P I + P
Subject   4574  TSYM*TPCCTLC*RKTSQIPQKIS*LPSSPYCSSFGVSTPRTL*SAPPAIGRI*ALPPPGPISSRPEIYRXP  4789

Range 6: 4586 to 4669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 16/28(57%) 0/28(0%) Plus/Plus
Query      102  DHRMRRYLIWRLKCSISSFGLRK*SRNT  185
                D R RRY  WR KCS SS+G R *  +T
Subject   4586  DLRTRRYWTWRWKCSNSSYGRRS*LEST  4669

Range 7: 4691 to 4795 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 18/35(51%) 0/35(0%) Plus/Plus
Query      207  AVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GTT  311
                A +W  W  *  L N    SST  ATWCS V*G T
Subject   4691  AAVWGTWQS*DFLGNLGRFSSTQCATWCSHV*GIT  4795

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 6

Range 1: 4518 to 4736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 62/73(85%) 0/73(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  310
                AFDRSQDEK+LD+EVEVL FFLWPE++I+EYE LKLMMG ALGDLA+MRFSGEFGTFFFNT+ NMVFSCMRYH
Subject   4518  AFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYH  4736

Range 2: 4517 to 4735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 56/73(77%) 0/73(0%) Minus/Minus
Query       91  WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA  309
                W  IQLNTML  VLKKKVPNSPENLI A+SP A PII+LS SYSLI SSG RKK  TSTS SS FSSCDLS A
Subject   4517  W*RIQLNTMLHTVLKKKVPNSPENLITARSPNAHPIISLSSSYSLIKSSGHRKKRKTSTSKSSTFSSCDLSNA  4735

Range 3: 4521 to 4736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 36/72(50%) 0/72(0%) Minus/Minus
Query       95  VVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK  310
                VV HT +HHVA GVEEEG+EF  EPH+ Q+   T+HHQL+ LV  D    P +E +  +L +++ L+L*SV+
Subject   4521  VVTHTTKHHVAHGVEEEGAEFPGEPHHRQVA*CTSHHQLKLLVLPD*IFGP*KEAQDLHLQVQHFLVL*SVE  4736

Range 4: 4525 to 4737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 37/71(52%) 0/71(0%) Plus/Plus
Query       99  TDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GTT  311
                TDH+ R+   WR +   S +G + *S +TR  S**W V    W **GS  NS PSSSTP ATWC  V  TT
Subject   4525  TDHKTRKCWTWRWRSCASFYGPKI*SGSTRSLS**WDVH*ATWR**GSPGNSAPSSSTPCATWCLVVCVTT  4737

Range 5: 4516 to 4734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 35/73(48%) 0/73(0%) Minus/Minus
Query       90  GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  308
                G +Y+*TPCC+ C*RRR RI +RTS  P    H PSS *  R P*   +A  R+    PP    S  VIC+ P
Subject   4516  GNAYN*TPCCTRC*RRRCRIPRRTSSPPGRLMHIPSSA*APRTP*LNLRAIERSARPPPPSPALSRLVICRMP  4734

Range 6: 4517 to 4735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 34/73(47%) 0/73(0%) Plus/Plus
Query       91  GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP  309
                G+ QIT  E    GG     L +A   +QG+R    DDG C    G +EVL  IR+LLLQH  QHGV LY +P
Subject   4517  GIRQITRRESAGLGGGGLALLSMARRFNQGVRGA*ADDGMCIRRPGGDEVLRGIRHLLLQHRVQHGV*LYALP  4735

Actinidia virus B, complete genome

Sequence ID: Length: 7488 Number of Matches: 6

Range 1: 4487 to 4702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 55/72(76%) 0/72(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRY  307
                AFDRSQDE+ILD E+EVL FFLWPEE+I EY+ LKLMMGS++G LA+MRFSGEFGTFFFNT+ NM F+C+RY
Subject   4487  AFDRSQDERILDFEMEVLKFFLWPEEVINEYKELKLMMGSSMGSLAVMRFSGEFGTFFFNTICNMAFTCLRY  4702

Range 2: 4490 to 4705 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 34/72(47%) 0/72(0%) Minus/Minus
Query       95  VVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK  310
                +V  T E HV  GV+EEGSEF RE H+   +    HHQ E  VF++H L P+EE+ HF+  I+   +L* VK
Subject   4490  LVTQTREGHVTDGVKEEGSEFARESHHS**SHGATHHQFELFVFINHLLWPQEEL*HFHFEIQDPFVL*PVK  4705

Range 3: 4486 to 4689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 45/68(66%) 0/68(0%) Minus/Minus
Query       91  LNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA  294
                +  ML  VLKKKVPNSPENLI A  P  LPIINLS  YSLI SSG +K  +TS S S I SSCDLS A
Subject   4486  VKAMLQMVLKKKVPNSPENLITASDPMELPIINLSSLYSLITSSGHKKNFNTSISKSRILSSCDLSNA  4689

Range 4: 4491 to 4694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 34/68(50%) 0/68(0%) Plus/Plus
Query       96  LTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV  299
                LT HR +   I + KC  SS G R+*  NT+ S+**W   W    ** S  NSEPSS TP  TW S V
Subject   4491  LTGHRTKGSWISKWKC*SSSCGQRR*LMNTKSSN**WVAPWDH*L**DSRANSEPSSLTPSVTWPSRV  4694

Range 5: 4486 to 4692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 28/69(41%) 0/69(0%) Plus/Plus
Query       91  GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQL  297
                G+*Q+TG +D  +   S + L +A G D  I+  Q+DDG   G    +E+L  IRNLLL H   HG+ +
Subject   4486  GV*QVTGRKDPGFRNGSVKVLLVARGGD**IQRAQIDDG*LHGITSCDEILGRIRNLLL*HHL*HGLHV  4692

Range 6: 4485 to 4691 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 31/69(45%) 0/69(0%) Minus/Minus
Query       90  S*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP  296
                +* PC   C*RRRFRI  R S     P   PSS *   I *S P A  R   L      S  PV CQ P
Subject   4485  T*RPCYRWC*RRRFRIRPRISSQLVIPWSYPSSI*ALCIH*SPPLATRRTLTLPFRNPGSFRPVTCQTP  4691

Grapevine virus B, complete genome

Sequence ID: Length: 7599 Number of Matches: 3

Range 1: 4465 to 4680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 55/72(76%) 0/72(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRY  307
                AFDRSQDEK+LD EV VL FFLWPEEMI+EY TLKLMMG ++G LA+MRFSGEFGTFFFNT+ NM F+C++Y
Subject   4465  AFDRSQDEKVLDFEVNVLKFFLWPEEMIEEYVTLKLMMGCSMGSLAVMRFSGEFGTFFFNTICNMGFTCLKY  4680

Range 2: 4518 to 4679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 34/54(63%) 0/54(0%) Minus/Minus
Query      145  YLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKL  306
                Y  Q+N ML  VLKK VPNSP   I A+ P   PII+LSV+YS IISSGQRK L
Subject   4518  YFRQVNPMLQMVLKKNVPNSPLKRITARLPMLHPIISLSVTYSSIISSGQRKNL  4679

Range 3: 4468 to 4668 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 26/67(39%) 0/67(0%) Minus/Minus
Query       95  AEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK  295
                +E HV  GVE+E  +F  + H  +   + +HHQLEC + L HF RP++E E+  L + +  IL S++
Subject   4468  SEPHVTDGVEKECPKFAAKAHNSETAHAASHHQLECYILLYHFFRPEKEFEYIYLKV*HFFILTSIE  4668

Grapevine virus E, complete genome

Sequence ID: Length: 7564 Number of Matches: 6

Range 1: 4504 to 4719 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 52/72(72%) 0/72(0%) Plus/Plus
Query       92  AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRY  307
                AFDRSQD  IL  E+ +L  FLWPEE+I+EY+TLKLMMG  LGDLA+MRFSGEFGTFFFNT+ NM FS +RY
Subject   4504  AFDRSQDGAILAFEICLLRHFLWPEELIEEYKTLKLMMGCQLGDLAVMRFSGEFGTFFFNTMCNMAFSYLRY  4719

Range 2: 4503 to 4703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 44/67(66%) 0/67(0%) Minus/Minus
Query       91  NTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA  291
                N ML  VLKK VPNSPENLI A+SP   PII+L V YS I SSG RK LS   S +SI  SCDLSKA
Subject   4503  NAMLHIVLKKNVPNSPENLITARSPSWHPIISLRVLYSSISSSGHRKCLSKHISKASIAPSCDLSKA  4703

Range 3: 4504 to 4704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 31/67(46%) 0/67(0%) Minus/Minus
Query       92  EHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVKG  292
                E HV   +EE+ S+ TREPH+ Q+ Q  +HHQ E LV L   L P E  E   L   Y  IL S+KG
Subject   4504  ECHVTHSIEEKCSKLTREPHHSQVPQLASHHQFEGLVLLYQLLWP*EMSEQAYLKS*YSTILRSIKG  4704

Range 4: 4505 to 4711 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 34/69(49%) 0/69(0%) Plus/Plus
Query       93  PLTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV  299
                PL D RM  Y + R  CS  S+G R * R+TR S+**W   W  W **GSLV+ E  SS    TW S +
Subject   4505  PLIDRRMVLY*LLRYACSDISYGQRS**RSTRPSN**WDANWGTWL**GSLVSLEHFSSILCVTWHSHI  4711

Range 5: 4554 to 4703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 24/50(48%) 0/50(0%) Plus/Plus
Query      142  AQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGV  291
                AQ  P+A G D+G++D Q DDG  +G  G +EVLW*+ N+ LQ+   HG+
Subject   4554  AQTFPMARGADRGVQDPQTDDGMPTGGPGCDEVLW*VWNIFLQYYV*HGI  4703

Range 6: 4505 to 4699 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 30/65(46%) 0/65(0%) Minus/Minus
Query       93  PCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQR  287
                PC +  *R+ F+ HQRTS  P  P   PSS * S  P S P A G  *A      V  HP I QR
Subject   4505  PCYT*Y*RKMFQTHQRTSSQPGPPVGIPSSV*GSCTPLSAPLAIGNV*ASISQKLV*HHPAIYQR  4699

Nucleotide Sequence (542 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
55
110
165
220
275
330
385
440
495
542

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
303.9 917.0 26% 7.099e-82 37% NC_003604
112.4 357.8 28% 3.22e-24 38% NC_018458
90.0 90.0 15% 1.848e-17 41% NC_016404
67.5 67.5 15% 1.06e-10 38% NC_011106
76.2 121.3 26% 4.364e-21 28% NC_003602

Alignments

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 13

Range 1: 5651 to 6142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.9 bits(657) 0.0 127/164(77%) 0/164(0%) Plus/Plus
Query       51  AMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                AMS     G K SS    +IKVF+VKR+T+DLETLNK+LHRGD Y TELIEKVFPRRT+KCVIHK+++VKDGRVDCDLDIMD GLD+++EEEFPLYHVGCIVVALMPHGKNL GKV VEV DTRL    SRISR+ MDMSKP+SACADFPGYFIST+DLLNGYT
Subject   5651  AMSQEGSLGTKASSFEPQDIKVFHVKRSTRDLETLNKSLHRGDVYNTELIEKVFPRRTKKCVIHKDVIVKDGRVDCDLDIMDEGLDDINEEEFPLYHVGCIVVALMPHGKNLQGKVSVEVLDTRLVDGASRISRTLMDMSKPLSACADFPGYFISTSDLLNGYT  6142

Range 2: 5632 to 5838 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 36/69(52%) 0/69(0%) Minus/Minus
Query       32  ITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDIAWVRLPL  238
                +THF V LG TFS++SV  +SPRCR L RVS+SLV L T KT IS  ++D++F P +   DIA +   L
Subject   5632  MTHFFVLLGKTFSMSSVLYTSPRCRLLLRVSRSLVLLLT*KTLISCGSKDEAFVPREPSCDIAVITFRL  5838

Range 3: 6043 to 6141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 25/33(76%) 0/33(0%) Minus/Minus
Query      443  VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDI  541
                VYP SRS+VLMK PGKSA AL G DISM++LDI
Subject   6043  VYPFSRSLVLMKYPGKSAQALNGFDISMRVLDI  6141

Range 4: 5938 to 5991 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 14/18(78%) 0/18(0%) Minus/Minus
Query      338  PFRFLPWGINATTMQPTW  391
                P RFLP GI+ATTM PTW
Subject   5938  P*RFLPCGISATTMHPTW  5991

Range 5: 5702 to 5998 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 37/99(37%) 0/99(0%) Minus/Minus
Query      102  YLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLM  398
                +LA+++L M HQRHH A  MV WE L ++++   IHD+++ +   + N  + +  AL   PWK+LLY+L +I +  + +LV S  + G P  V+DL ++
Subject   5702  HLALKVLTMWHQRHHYAPYMVEWEFLFIYVV*ALIHDVQIAVHAAVLNDDVFVDDALLRSPWKNLLYELCVIHVTPMQALVESFEVSGAPFDVKDLNIL  5998

Range 6: 6041 to 6142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 19/34(56%) 0/34(0%) Minus/Minus
Query      441  CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YP  542
                CV V+ I+GA EV RE+ T    L HIHE P YP
Subject   6041  CVSVQQITGANEVPREVSTGAQWL*HIHEGPRYP  6142

Range 7: 5638 to 5835 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 32/66(48%) 0/66(0%) Plus/Plus
Query       38  ESDPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVR  235
                E D SYV RRFSG+KG++ R++   GL R++EHQ  R+S+Q       +* R  REG SK ++EVR
Subject   5638  EGDYSYVARRFSGYKGLILRATRY*GLSRQKEHQRPRNSQQEPASG*RV*HRAHREGFSKENEEVR  5835

Range 8: 6016 to 6141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/42(43%) 0/42(0%) Plus/Plus
Query      416  HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH  541
                H+  R    DI + HGYV+A + +C  P +LH H *S +R+H
Subject   6016  HQAGRRGIKDI*DPHGYVKAIERLC*LPGVLH*HQ*SAERIH  6141

Range 9: 5926 to 5976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 11/17(65%) 0/17(0%) Plus/Plus
Query      326  VPTIPCRLHRGGVDAPW  376
                +PT+PCR+H GG DA W
Subject   5926  IPTLPCRVHSGGADATW  5976

Range 10: 5799 to 5999 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 27/67(40%) 0/67(0%) Plus/Plus
Query      199  *RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR*  399
                *RR FQG + SA   ++  L+         SW++      +R+SH TM  A WWR*C M R   AR*
Subject   5799  *RRFFQGERRSASSTKTSSLRTAAWTAIWTSWMRA*TT*MKRNSHSTM*GA*WWR*CHMVRTFKAR*  5999

Range 11: 6039 to 6140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 18/34(53%) 0/34(0%) Plus/Plus
Query      439  RGYQGASWICPSP*VHVQISLVTS*APLIYSTGT  540
                +GY G SWIC S *  V  S  TS AP+I  T T
Subject   6039  QGYLGPSWICQSH*APVLTSRGTSLAPVIC*TDT  6140

Range 12: 5604 to 5834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 31/77(40%) 0/77(0%) Minus/Minus
Query        4  RTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGSDSH*TPKHTQHTL  234
                RTS  +LE PSL    +        C E    WCS  R RP     R   PL PENL  T*L S S  T + T   L
Subject   5604  RTSSFSLEKPSL*ALCYTRHPDAGSC*EFRGLWCSF*RERP*YLVARRMRPLYPENLLAT*L*SPSACTDRVTTFLL  5834

Range 13: 6042 to 6140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 17/33(52%) 0/33(0%) Minus/Minus
Query      442  CTR*VDQWCL*SNQGNLHMHLWAWTYP*SSLIS  540
                C R  D WC *S  G+ H    A TYP* S IS
Subject   6042  CIRSADHWC**STPGSQHRRSMALTYP*GS*IS  6140

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 6

Range 1: 5987 to 6235 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 45/83(54%) 0/83(0%) Plus/Plus
Query      294  DTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                D  + ++DEE +P+YH GC+VVALMPHG+N+ GKV +  KD RL+     I     D+ K ISA A+FPGYFIST DL  GYT
Subject   5987  DGVVGKLDEEAYPIYHAGCLVVALMPHGRNVKGKVALRFKDRRLKAGKDVIGSMVADLKKGISAHAEFPGYFISTADLKAGYT  6235

Range 2: 5768 to 6016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 38/83(46%) 0/83(0%) Plus/Plus
Query       78  LKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEE  326
                +  SS    E+K+F VK+     E LNKA+ R D Y+ ELIE++ P+RTRKCV+HKE+ V + RV+ +++IMD G+    +EE
Subject   5768  MASSSDNSREVKIFEVKKGATGFEELNKAISRSDVYDNELIERIMPKRTRKCVVHKEISVVNSRVNVEMEIMDDGVVGKLDEE  6016

Range 3: 6012 to 6119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 15/36(42%) 0/36(0%) Plus/Plus
Query      319  RRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDS  426
                RR    T   A WW *CP A     R  + SRT  S
Subject   6012  RRRIRSTTQDAWWWH*CPTAGTLRVRSRFASRTVGS  6119

Range 4: 6154 to 6210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 9/19(47%) 0/19(0%) Plus/Plus
Query      461  GYVQAHKCMCRFPWLLHKH  517
                G  + HKC CR   L H H
Subject   6154  GSQERHKCTCRVSRLFHIH  6210

Range 5: 6031 to 6234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 39/68(57%) 0/68(0%) Minus/Minus
Query      338  VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTW  541
                VYP  RS V MK*PG SA ALM    S  +L I  F  LSL SL  + TLP  FLPWGI+ATT  P W
Subject   6031  VYPAFRSAVDMK*PGNSACALMPFLRSATILPITSFPALSLRSLKRSATLPLTFLPWGISATTKHPAW  6234

Range 6: 5776 to 5931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 20/52(38%) 0/52(0%) Minus/Minus
Query       86  CITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDD  241
                C TH  VR G   S++S+S +S    ALF  S  +   FT K F S    +D
Subject   5776  CTTHLRVRFGIIRSMSSLSYTSLLEIALFSSSNPVAPFFTSKIFTSLELSED  5931

Actinidia virus B, complete genome

Sequence ID: Length: 7488 Number of Matches: 1

Range 1: 5965 to 6201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 32/79(41%) 0/79(0%) Plus/Plus
Query      303  LDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGY  539
                +D ++EE+ P  H+GC+ +A++PHG+ + G V ++V+D R +  +  +     D+   +SA A FPGYF+STTD+ NGY
Subject   5965  IDGLNEEKQPYLHLGCVAIAVIPHGRAMKGTVQIKVEDQRFKEGHGTVCSFKCDLKDALSAYASFPGYFVSTTDVKNGY  6201

Grapevine virus E, complete genome

Sequence ID: Length: 7564 Number of Matches: 1

Range 1: 5988 to 6224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 30/79(38%) 0/79(0%) Plus/Plus
Query      306  DEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                D +D+E  P  HVGCIVV  M   ++  G   V ++D RL+G +  I       S  ++A ADFP Y I+  DL  G++
Subject   5988  DGLDKEATPFMHVGCIVVGFMSLARSAVGTYKVIIQDDRLKGEHKNICAFTFQTSDKVAAFADFPDYCIAVEDLAAGFS  6224

Grapevine virus B, complete genome

Sequence ID: Length: 7599 Number of Matches: 2

Range 1: 5868 to 6101 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 26/78(33%) 0/78(0%) Plus/Plus
Query      309  EVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                +++   +P  H+GC+ + ++PHG++L G+V   ++DTR    ++ +        + +SA + FPGYF+ST DL++G+T
Subject   5868  KIETTSYPYLHLGCVAICVIPHGRDLKGEVEFTLRDTRFLPRSNPLMSFGCKAERMLSAFSAFPGYFVSTYDLIDGFT  6101

Range 2: 5661 to 5852 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 18/64(28%) 0/64(0%) Plus/Plus
Query      105  EIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMD  296
                ++ VF   +    ++ +  A+ +   Y+    E++FP R  K V+H+E+ V+DG V   +++MD
Subject   5661  QLSVFPKPKEELGVKGVKSAIAKTKVYDLSYFERLFPTRVFKSVVHEEIRVRDGEVKQVINLMD  5852