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Queries

Nucleotide Sequence (147 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
15
30
45
60
75
90
105
120
135
147

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
118.4 494.9 33% 3.169e-27 62% NC_001948
62.5 62.5 33% 2.133e-10 46% NC_003849
63.4 63.4 31% 1.13e-10 50% NC_001658
61.6 61.6 27% 4.025e-10 62% NC_028975
61.1 61.1 27% 5.53e-10 59% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 8134 to 8277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        3  LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA
Subject   8134  LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  8277

Range 2: 8133 to 8276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 42/48(88%) 0/48(0%) Minus/Minus
Query        2  AGGIPVSRWIFHTIFA*YMQNLCRVVTSLIIPAISDLFRSQKGLFPIK  145
                AGGIPVSRW+FHTIFA*YMQNL  VVTSLIIPAISDLFRSQ GL PI+
Subject   8133  AGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIR  8276

Range 3: 8136 to 8273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 30/46(65%) 0/46(0%) Plus/Plus
Query        5  DWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDST  142
                DW+ES+L*P+ + N W+ KG D+   ILHVLCKNRVE+PSGDGD+T
Subject   8136  DWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTT  8273

Range 4: 8134 to 8277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 30/48(62%) 0/48(0%) Minus/Minus
Query        3  SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ  146
                S W PRLQMD+PHDFCIVHAKS    H PY  S F  + VT+ TL+NQ
Subject   8134  SWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQ  8277

Range 5: 8132 to 8278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 32/49(65%) 0/49(0%) Plus/Plus
Query        1  P*LERVPSVT*IGLKLLE**GK*LPCTDFACTMQKSCGISIWRRGFHPL  147
                P*L RV  VT*   K L  *G+*    DFACTMQKSCG SIWRRG+H L
Subject   8132  P*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQL  8278

Range 6: 8135 to 8272 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 29/46(63%) 0/46(0%) Minus/Minus
Query        4  VESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQS  141
                V SPSPDG STRFLHSTCKI    S PL  Q F    GH+ DS QS
Subject   8135  VVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQS  8272

Plantago asiatica mosaic virus, complete genome

Sequence ID: Length: 6128 Number of Matches: 1

Range 1: 5580 to 5723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 22/48(46%) 0/48(0%) Plus/Plus
Query        3  LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                L G SP   ++ ++IAG+++  TTL +FC +YAKI+WN  L   +PPA
Subject   5580  LSGPSPTPTISLAQIAGVVKVTTTLRKFCRFYAKIIWNARLARNLPPA  5723

Cassava common mosaic virus, complete genome

Sequence ID: Length: 6376 Number of Matches: 1

Range 1: 5849 to 5986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 23/46(50%) 0/46(0%) Plus/Plus
Query        9  GKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                G SP   + R+ +AG +R+ TTL +FC YYAKI+WN  ++  IPPA
Subject   5849  GSSPTPTIPRAALAGAVRKHTTLRQFCRYYAKIIWNARVKANIPPA  5986

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 1

Range 1: 8222 to 8338 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 24/39(62%) 0/39(0%) Plus/Plus
Query       30  LNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                + R EIA +I++ TTL RFC +YAKIVWNI L T IPP+
Subject   8222  VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPS  8338

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 1

Range 1: 8162 to 8278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 23/39(59%) 0/39(0%) Plus/Plus
Query       30  LNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                + R EIA +I++ TTL R+C +YAKIVWNI L T IPP+
Subject   8162  VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPS  8278

Nucleotide Sequence (250 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
25
50
75
100
125
150
175
200
225
250

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
161.0 737.2 46% 2.118e-39 66% NC_001948
40.5 77.3 32% 1.159e-08 37% NC_006948
45.5 104.5 16% 1.053e-11 45% NC_014821
48.7 81.9 22% 5.233e-10 45% NC_009892
46.0 75.0 20% 5.361e-08 39% NC_012519

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 7109 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 62/83(75%) 0/83(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  249
                LPCEVRG+TF+VVTLLKSRDPTP+D+HWFYIAA RHR+KLIIMQ*+AFSAACELG+N++ ID WLGHW  AAF ++VK  + R
Subject   7109  LPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFR  7357

Range 2: 7110 to 7358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 61/83(73%) 0/83(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                +LV+ EV  L    +*NQ I+P  I TG TLL QD  RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG
Subject   7110  YLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG  7358

Range 3: 7112 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 56/82(68%) 0/82(0%) Minus/Minus
Query        4  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTR  249
                PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ   ++K  TS  TR
Subject   7112  PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR  7357

Range 4: 7111 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 57/82(70%) 0/82(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  248
                L+  +LT   NAA +QCPSQ SM   F PNSQAAEKA +CM+INF LCL AAM*NQCLSSGVGSLDF +VTT  V P TSQG
Subject   7111  LNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQG  7356

Range 5: 7156 to 7344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 46/63(73%) 0/63(0%) Plus/Plus
Query       48  EIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQI  236
                EIK S+PR *ALVLHCC KT  EID+HAV+CLFSSLRIG K   H*+LAWAL  CCI * SQI
Subject   7156  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQI  7344

Range 6: 7155 to 7358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 45/68(66%) 0/68(0%) Minus/Minus
Query       47  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS  250
                P*+  I*L  +MQH+ NAQAN QW   F PIRRLLKRH TA* SIS  VL QQC+TSAY  G D LIS
Subject   7155  P*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7358

Mint virus X, complete genome

Sequence ID: Length: 5914 Number of Matches: 2

Range 1: 4679 to 4792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 14/38(37%) 0/38(0%) Plus/Plus
Query      137  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                MP   P +++K +  + +GL   L++H L +S LP+SG
Subject   4679  MPLAPPPDYSKAVLAVAVGLAAALLVHQLTRSTLPHSG  4792

Range 2: 4548 to 4673 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 18/42(43%) 0/42(0%) Plus/Plus
Query        4  PCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIM  129
                PCE  GATF VVT++        D    YIA  RH + L I+
Subject   4548  PCEALGATFPVVTVISGTPLEEADAVDRYIALTRHTRLLRIL  4673

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 3

Range 1: 7347 to 7460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 17/38(45%) 0/38(0%) Plus/Plus
Query      137  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                MPF QP +++K++ P+ IG  + LVL  L +S LP  G
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVG  7460

Range 2: 7208 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 12/19(63%) 0/19(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSR  57
                LPC+VRGATFD VT +  +
Subject   7208  LPCQVRGATFDTVTFIHEK  7264

Range 3: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 7/15(47%) 0/15(0%) Plus/Plus
Query       85  FYIAAARHRKKLIIM  129
                +Y+A  RHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 7163 to 7276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 17/38(45%) 0/38(0%) Plus/Plus
Query      137  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                MP  QP +++K++ PL IGL +G+V+  L +S LP++G
Subject   7163  MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAG  7276

Range 2: 7022 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 11/16(69%) 0/16(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLL  48
                LPC+VRG+TF+VVT +
Subject   7022  LPCQVRGSTFEVVTFI  7069

African oil palm ringspot virus, complete genome

Sequence ID: Length: 7781 Number of Matches: 2

Range 1: 6313 to 6426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 15/38(39%) 0/38(0%) Plus/Plus
Query      137  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                M  + P N+   I   +IG+ +GL++HF+R++ LP+SG
Subject   6313  MSLRPPTNYTNAILAASIGVAVGLLIHFVRRNELPHSG  6426

Range 2: 6171 to 6209 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 10/13(77%) 0/13(0%) Plus/Plus
Query        4  PCEVRGATFDVVT  42
                PC+VRGA F+VVT
Subject   6171  PCDVRGAEFEVVT  6209

Nucleotide Sequence (783 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
79
158
237
316
395
474
553
632
711
783

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
530.3 1776.3 27% 8.29e-150 44% NC_001948
74.4 112.1 12% 2.07e-16 46% NC_009892
63.4 113.5 12% 8.697e-17 46% NC_028975
64.3 111.2 12% 4.026e-16 46% NC_025388
65.7 109.8 11% 1.019e-15 48% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 2555 to 3334 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
530.3 bits(1151) 0.0 223/260(86%) 0/260(0%) Plus/Plus
Query        2  VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                V GNHCSLTI P EFFEMPRGMQ N+FHGVSNC  GRVSLTFRRQKLEDDD IFI+PQVPIE NHEKLDR+MWQMGLHGIKKSIS+NGTSFTSDLCSCFSCHNFHKFKDLINNL+LALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSILVLEGALS+ETDYGPK+LGSFEVFKGDF IKK+E+GSIFVI+Y+AP+RSTG+LRVH S CSFSGS+E+LLGC IEA AD++I+DFNTF VPGDG+CFWHSVGFLLSTD
Subject   2555  VGGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINNLRLALGAQGLGQCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD  3334

Range 2: 2554 to 3225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
375.0 bits(812) 0.0 168/224(75%) 0/224(0%) Minus/Minus
Query        1  QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST  672
                QP+N SLDPENEH++L*TL+LPVDL GAL  ITK+EPSSIFL+ KSPLKTS DP+ FGP*SVS +RAPSRT+IDCFLL GI++T DRP PVVANTTLSH P P APRANL+L +RSLNL*KL QEKQE RS+VKLVP IE+DFLIP RPICH+LRSSFS*  SMGT G +KI SSSSNFWR  V DT P  QLETPWK L C+P GISKNS G IVRLQ  P T
Subject   2554  QPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH*PSPCAPRANLKLLMRSLNL*KLWQEKQEHRSEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMKIKSSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPPT  3225

Range 3: 3265 to 3336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 20/24(83%) 0/24(0%) Minus/Minus
Query      712  PSVLRRKPTECQKQSPSPGTGKVL  783
                PSVL +KPTECQKQ PSPGT KVL
Subject   3265  PSVLSKKPTECQKQLPSPGTEKVL  3336

Range 4: 2555 to 2896 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 58/114(51%) 0/114(0%) Minus/Minus
Query        2  EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN  343
                +++ +ILE +KV+ R+ R  V* K  AI+ N FL+ M+AHLPH ++KL MI LNGHL   ++ IIIF  LA + QR+ P + IGN ME +ALH PRH ++L   NCQAAM++ N
Subject   2555  QVIDEILEFMKVVARETRA*V*GKTRAIHRNRFLNSMKAHLPHTSVKLFMIELNGHLWIYEDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITPN  2896

Range 5: 2972 to 3334 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 59/121(49%) 0/121(0%) Minus/Minus
Query      419  VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL  781
                + A+ K N +PKA+ ITRHR+SV++ N  IS CLN AA   L   GK*A   VN   A GS+W  VRYYK+ T  +L N ++PF+NFK  QDFWT++ F   G FK+++ L  A  H  NL
Subject   2972  ISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFYG*GTFKNQN*LLFAPRHF*NL  3334

Range 6: 3018 to 3332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 55/105(52%) 0/105(0%) Minus/Minus
Query      465  RC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQ  779
                +C* ++Q +AKS+ HHQAQ KC*+ Q+ NQ MPQSGS       RKMS+  CE   C WI*L PC +LQ+ N   S *  +PL*KLQ  P  LD + FL  G LQ
Subject   3018  QC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQ  3332

Range 7: 2556 to 2882 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 53/109(49%) 0/109(0%) Minus/Minus
Query        3  DP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ  329
                DP*  ES  K++K+ GL *+ CH  K IS* H GP AT   QA HD AQWA    *+ +HHL  FG   S   + + NWK HG +C A P A ++T   QLSGCN + Q
Subject   2556  DP*IYESCGKRNKSIGLR*NSCHS*K*IS*FHEGPSATYFGQAFHD*AQWAPVDL*RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQ  2882

Range 8: 2973 to 3329 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 57/119(48%) 0/119(0%) Plus/Plus
Query      420  KFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA  776
                +F  C  A++++   LK P+ *K   VQKSW  LKF KG   L+R + V  L*  T  Q DP A * FT  +AHFP       AARLRH LI  L   TL LCLVM  AFG  L F+ A
Subject   2973  RF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLA  3329

Range 9: 2569 to 2919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 52/117(44%) 0/117(0%) Plus/Plus
Query       16  LQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPR  366
                LQPDN    V  +A G+A QL PW FQL     + D+  PK+ R** + +    AH*A+S*+A* ++VA+GP W+ EI+F  WH+ Y+RP+ L  L  LS +QGS +  ++  R  R
Subject   2569  LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR**FDLHKSTGAH*AQS*KA*PKYVADGPSWN*EIYFYEWHEFYLRPMLLFLLPQLS*IQGSHQ*LEIGPRSTR  2919

Range 10: 2568 to 2855 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 48/96(50%) 0/96(0%) Plus/Plus
Query       15  IAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFL  302
                IAA*QL   S  +CLG C A  SM FPI   G   *   AK+ KMMI      +CPLS IM+SL   CG+WA M  RN F  MA+ L QT+ L  L
Subject   2568  IAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMMI*SS*IHRCPLSSIMKSLTEVCGRWAFMELRNLFL*MARVLPQTYALVSL  2855

Range 11: 2986 to 3279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 43/98(44%) 0/98(0%) Plus/Plus
Query      433  AKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC  726
                A +Q+ ++   *R P  RN L SK+ G+ *SF RG  +*+D   F+ CN +QG + IH Q + SQ  MLIFR++  +  LPD*G+ *   *   HF C
Subject   2986  ASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLC  3279

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 3086 to 3256 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 27/57(47%) 0/57(0%) Plus/Plus
Query      611  KLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                +LR H   C  S   E L GC +  S  F  ++F+ F VPGDG+CFWHSVG L+  D
Subject   3086  QLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVD  3256

Range 2: 2474 to 2578 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 16/35(46%) 0/35(0%) Plus/Plus
Query       35  PGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQK  139
                P + F MP G Q +  H + +   GRVSLTFR+ K
Subject   2474  PWDAFIMPHGFQVSHKHCILDTSEGRVSLTFRKSK  2578

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 2

Range 1: 2795 to 2950 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 24/52(46%) 0/52(0%) Plus/Plus
Query      626  KSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                K  C   G  E L    I  +  +  ++F+TFPVPGDG CFWHS+G LL  D
Subject   2795  KHTCGEFGDTESLFDVLIRRNFSYSAKNFHTFPVPGDGSCFWHSLGALLGVD  2950

Range 2: 2639 to 2761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 20/41(49%) 0/41(0%) Plus/Plus
Query        8  GNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFR  130
                G   +  ++PG+FF M    QS + H V NC  GRVSLTFR
Subject   2639  GVSATCQMKPGQFFTMDSNFQSYYQHSVQNCSEGRVSLTFR  2761

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 2

Range 1: 2795 to 2950 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 25/52(48%) 0/52(0%) Plus/Plus
Query      626  KSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                K  C   G  E L    I  S  +  ++F+TFPVPGDG CFWHS+G LL  D
Subject   2795  KHTCGEFGDTESLFDVLIRRSFSYSSKNFHTFPVPGDGSCFWHSLGALLGVD  2950

Range 2: 2639 to 2761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 19/41(46%) 0/41(0%) Plus/Plus
Query        8  GNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFR  130
                G + +  ++ G+FF M    QS + H V NC  GRVSLTFR
Subject   2639  GVNATCHMKTGQFFTMDSNFQSYYQHSVQNCSEGRVSLTFR  2761

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 2

Range 1: 2783 to 2938 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 25/52(48%) 0/52(0%) Plus/Plus
Query      626  KSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                K  C   G  E+L    I  S  +  ++F+TFPVPGDG CFWHS+G LL  D
Subject   2783  KHTCGEFGDTEILFDVLIRRSFTYAAKNFHTFPVPGDGSCFWHSMGALLGVD  2938

Range 2: 2654 to 2749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 17/32(53%) 0/32(0%) Plus/Plus
Query       35  PGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFR  130
                PG +F M    QS + H V +C  GRVSLTFR
Subject   2654  PGHYFTMDSNFQSYYQHSVQDCSEGRVSLTFR  2749

Nucleotide Sequence (1021 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
103
206
309
412
515
618
721
824
927
1021

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
529.4 1819.8 39% 2.143e-149 43% NC_001948
174.3 397.9 18% 1.677e-70 49% NC_028868
171.1 417.6 19% 1.47e-72 46% NC_009892
170.6 420.0 11% 6.504e-71 43% NC_009991
168.3 415.7 25% 3.156e-70 42% NC_028111

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 488 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
529.4 bits(1149) 0.0 216/253(85%) 0/253(0%) Plus/Plus
Query      117  DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R  875
                DKS+ VVS+KGIGDS++L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+I+  Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSGSLLMPNI KL I FF R
Subject    488  DKSSQVVSRKGIGDSNTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSGSLLMPNISKLVISFFCR  1246

Range 2: 514 to 1242 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
407.5 bits(883) 0.0 185/243(76%) 0/243(0%) Minus/Minus
Query      143  QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF  871
                QK  M +  M GIS+EPLLPQ +TSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKHRM E +RL IGVKL+K   NFE   ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS W   ILYW*AQG +LSGEPT  SGGITAVA+SMLGL TS+K++RS IDQ**ISS RKRFLAPVEITRGTN  S  ESP+PF
Subject    514  QKNDMTNLEMLGISKEPLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMSTE*REPSGRTTDLALSRYLHDKGCEYISFQLPSGAKSSWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF  1242

Range 3: 459 to 1217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.6 bits(414) 0.0 116/253(46%) 0/253(0%) Minus/Minus
Query       88  ECLALAESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH  846
                +C A A+SH  HNL  V++NP+*  SP   V  *     PRQ PY A * FSNKDI * QHHD   S+ A R LE  DL C   ++++N  C K +DY  G*+  S   IL+   +P SV+H+   QI  *A   +T VV+T H+S H  +RA G   FYTG+PKG    ESQ      L  L  AC A   P  * D   TS+E HH EKDS HL + H GPIS    NHQ P  *Q     H*+L + QTH
Subject    459  KCWA*AKSHSSHNLLLVRKNPR*TLSPSLWVFL*VVEALPRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE*CQPSSVSHRAELQIWP*AGICMTKVVSTSHSSCHLVRRAVGCH*FYTGRPKG*DSLESQPALLEGLLQLPRACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPISGVC*NHQCPFY*QPDLICH*NL*RTQTH  1217

Range 4: 470 to 835 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 54/122(44%) 0/122(0%) Minus/Minus
Query       99  SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK  464
                S  +Q+  *Q L*+H  PV I  +E L   + ILV PRV    RAN+ F   Y  C++H    + Q+ D+I   PV+N IM+KKIP TC ++T DQ  E VRITN+L  DN+   +TR Y++
Subject    470  SGLEQVSA*QRL*VHLIPVAIWCEEQLVAIDFILVGPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQSPECVRITNALSTDNLT*FVTRTYNE  835

Range 5: 881 to 1222 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 53/114(46%) 0/114(0%) Minus/Minus
Query      510  LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M  851
                L NV H QRAT  T Y  * KIL++  LP   F  +L++  LGR LI L E SQIKIY S NIMM+ +A +H A *R +IF A  ++  +T +V + KI   GE + V+ +F*+
Subject    881  LRNVGHKQRATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*V  1222

Range 6: 505 to 918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 64/138(46%) 0/138(0%) Plus/Plus
Query      134  CQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHP  547
                CQ +G+W*F*   EIGP+C+ +RC+ESFS **+SLLV   S    G   A+HA  N  N   +  WLS +  PLGLPV*N  +P AL + W L *+V TT V  + A   IC    W TL G     KI   L   HP
Subject    505  CQ*KGHW*F*HTPEIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHALGNCSNPSRSAGWLSRES*PLGLPV*NQWQPTALRTRWQLE*DVLTTFVMQIPAQGQICSSARWLTLLG*HHSLKI*SPLA*FHP  918

Range 7: 1006 to 1242 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 39/79(49%) 0/79(0%) Plus/Plus
Query      635  YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASHPLLL  871
                +A LL   S*CC *+ISLFEN Q+A *G+CRG+ ++ +R+T+ +GD ++ GF  T +KLW++WL A A+H    H +LL
Subject   1006  HAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEWLFAYAQHF*VGHIILL  1242

Range 8: 738 to 1223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 70/162(43%) 0/162(0%) Plus/Plus
Query      367  IEFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS  852
                I+ +   CS  +M TG++C HN C    C + DL    M HA R  S  QN   T   SP  +IF*  T  V       A KI +L* A C  A + IMML L+YIFI*E S+S IR+LPR++  +   N   GR +  RI  H  *+V  VALC C TF S
Subject    738  IKSMATNCSSHQMATGMRCTHNLCHADTCSRPDL*FCPMAHATRLTSFTQNLVTTCLVSPLWVIF*LQTCDVFLASMQ*A*KILNL*AAACTVASQYIMML*LRYIFI*ELSRSQIRSLPRQSFDNS*KNPQGGR*SLSRIFPH***IVGGVALCLCPTFLS  1223

Range 9: 504 to 671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 29/56(52%) 0/56(0%) Plus/Plus
Query      133  LSARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQ  300
                LS  R LVILT S +WS V*  QV GIFF MM+F TG   I S  W      C  Q
Subject    504  LSVERALVILTHSGDWSHV*FPQVPGIFFCMMRFTTGQLVI*SIFWTLPSQACSWQ  671

Range 10: 1151 to 1279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 27/43(63%) 0/43(0%) Minus/Plus
Query      870  IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS  998
                I DF+ +V   GRSGSLL+PNI  +V SFFCRM+ N LAR+SS
Subject   1151  IEDFSSLVINCGRSGSLLMPNISKLVISFFCRMMPNALARLSS  1279

Range 11: 1147 to 1278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 23/44(52%) 0/44(0%) Plus/Minus
Query      871  EEILARTFSNILQKKEKTTIGMFGNSKEPLLPPHLTTKAKSPIN  1002
                EE LA  F  I QK + T + M G SKEPLLP  +T++ KS IN
Subject   1147  EESLASAFGIIRQKNDMTNLEMLGISKEPLLPQFITSEEKSSIN  1278

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 4

Range 1: 497 to 925 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.3 bits(374) 0.0 70/143(49%) 0/143(0%) Plus/Plus
Query      126  NHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPIN  554
                +++ SKK + +  +LK+LVP V  +  RN FLHDE+HYWS +DL+ FL+ V P+ L+AT V PPEIL G+ ESLNPW Y +     ++ F PDG   E Y+QPLSS Y+LKA  +V   G  Y+VD+++S F HH++S T  N
Subject    497  DNLCSKKSLSECGTLKELVPLVKMSKKRNFFLHDELHYWSPQDLMLFLDSVNPDHLVATVVFPPEILAGAKESLNPWCYSFHRQGSKLTFFPDGVQSESYTQPLSSGYILKASKIVCPSGQIYSVDLVYSAFAHHVVSITKGN  925

Range 2: 944 to 1222 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 49/93(53%) 0/93(0%) Plus/Plus
Query      576  RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL  854
                R FS F+A G+K L  LS  +  C PV  D+++KIY Y+RTLKKPD +S  AKL Q++  PTG EIKF EDF+ LV+      SLLMP+  KL
Subject    944  RFFSNFEATGVKHLSGLSHSVRDCIPVSTDLISKIYRYIRTLKKPDLQSCMAKLSQIVPNPTGVEIKFTEDFSRLVMEIQPLKSLLMPDTAKL  1222

Range 3: 946 to 1173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 37/76(49%) 0/76(0%) Minus/Minus
Query      578  MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKH  805
                MTS  KSS+NLIS PVGL     + A  D  SGFLRVL    IL   S  TG Q      R  R   P+ASK EK+
Subject    946  MTSREKSSVNLISTPVGLGTIWLSLAMQDCKSGFLRVLIYL*ILDIRSVLTGMQSLTEWERPDRCFTPVASKFEKN  1173

Range 4: 547 to 723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 29/59(49%) 0/59(0%) Minus/Minus
Query      176  GFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTN  352
                GF+LS  P  ISGG T VA    GLT S+  +RS   Q** SS +K+FL  + +T GT+
Subject    547  GFRLSLAPANISGGKTTVATK*SGLTESKNSIRSCGLQ**SSSCKKKFLFLLILTSGTS  723

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 521 to 925 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 69/135(51%) 0/135(0%) Plus/Plus
Query      141  KKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  545
                K G  +  S+K L+P+ +S  +R  FLHDEIHYWS   LI FL  V+P M+LAT V PPEIL G+ ESLNPW Y+++I+   +++APDG   E Y QPLS  YLLK   + L DGS Y++D++ S F HHL+  T
Subject    521  KVGFENDPSIKDLLPQCVSDSSRRFFLHDEIHYWSKEALINFLVSVQPEMILATVVYPPEILAGAKESLNPWCYKFQINGDDLIYAPDGCMQEAYIQPLSGCYLLKTSGIELPDGSFYSLDLVKSTFSHHLICIT  925

Range 2: 935 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 50/104(48%) 0/104(0%) Plus/Plus
Query      558  LLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF  869
                L+   +R FSGF+A   K + PL R + SCFP+H +++ +IY YLRTLKKPD +S+ AKL Q++  PTG EIKF E+F+ L+++C    + L+PN+ KL   FF
Subject    935  LINQKMRPFSGFEATSSKGISPLMRKVGSCFPIHPNLILRIYRYLRTLKKPDLQSSMAKLSQVLPNPTGPEIKFFEEFSKLLLNCETVNTKLLPNVWKLISNFF  1246

Range 3: 958 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 44/96(46%) 0/96(0%) Minus/Minus
Query      581  KKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEK  868
                KK   SF  FG S    + QL  +   SS NLIS PVG   +* +FA  D  SGF  VLK*RYIL     C GKQ    R++G      +ASKP K
Subject    958  KKLDMSFQTFGRSFVFTVSQLSNNFENSSKNLISGPVGFGRT*LSFAMDDWRSGFFSVLK*RYILRIKFGCIGKQEPTLRIKGEIPFEEVASKPLK  1245

Range 4: 526 to 732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 32/69(46%) 0/69(0%) Minus/Minus
Query      146  GFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIP  352
                GFKLS  P +ISGG T VAR + G T +RK +R+ + Q**ISS RK+ L   E   G+    E     P
Subject    526  GFKLSLAPAKISGG*TTVARIISG*TETRKFIRASLLQ**ISS*RKKRLEESETH*GSRSFIEGSFSNP  732

Phlox Virus B, complete genome

Sequence ID: Length: 9058 Number of Matches: 5

Range 1: 529 to 918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.6 bits(366) 0.0 69/130(53%) 0/130(0%) Plus/Plus
Query      156  DSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  545
                D  +LK LVP ++   A++LF+HDEIHYWS RDLITFLEV++P ++ AT V PPE+LVGS  SL  W Y++ +      F PDG   E Y QPL + YLLKA+ ++L DG  Y VDV+ SKF HHL++ T
Subject    529  DGVTLKDLVPELMRKSAKHLFMHDEIHYWSARDLITFLEVIQPEVMYATMVYPPELLVGSKFSLFKWCYEFDVIGNDFFFYPDGVRTEGYLQPLKNGYLLKAKRILLPDGGVYHVDVVQSKFAHHLIAIT  918

Range 2: 940 to 1212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 50/91(55%) 0/91(0%) Plus/Plus
Query      570  NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPN  842
                N+R F  FDA   + LEPL+  +  CFPV  +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS     S+L P+
Subject    940  NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIISTNTIKSILCPS  1212

Range 3: 963 to 1175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 32/71(45%) 0/71(0%) Minus/Minus
Query      593  MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMAS  805
                M ++AKS  NLIS P G  I+  + A AD  SGF  V + RY L TTS  TGKQ     + GS     +AS
Subject    963  MINDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS  1175

Range 4: 528 to 719 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 31/64(48%) 0/64(0%) Minus/Minus
Query      155  KLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESES  346
                +L+ +PT  SGG T VA    G  TSR VMRSR  Q* ISS   R LA   ++ GT  LS + S
Subject    528  RLNLDPTNNSGGYTMVAYMTSG*ITSRNVMRSRALQ*CISSCINRCLADFLMSSGTRSLSVTPS  719

Range 5: 765 to 905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 20/47(43%) 0/47(0%) Minus/Minus
Query      392  K*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAK  532
                K*  N    TST *  PS      ALS+    NGC   S   PSG K
Subject    765  K*CANLLCTTSTW*TPPSGSNIRFALSR*PFFNGCR*PSVLTPSG*K  905

Nerine latent virus isolate Marijiniup 4, complete genome

Sequence ID: Length: 8334 Number of Matches: 4

Range 1: 579 to 947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 67/123(54%) 0/123(0%) Plus/Plus
Query      177  LVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  545
                + PR     +R LF HDEIHYWS +DLI  LE  RP  +LAT V PPEIL GS ESLN W Y+Y+I  G++ + PDG   E Y+QPL S +LLK + + L DG  Y VD++HSKF HHL+S T
Subject    579  MFPRNFQGKSRKLFFHDEIHYWSRKDLIYMLEQFRPECILATLVCPPEILAGSKESLNKWCYEYKIDGGKLHYYPDGVHSEGYTQPLDSSFLLKTKKIQLDDGETYCVDLIHSKFSHHLISIT  947

Range 2: 960 to 1253 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 50/98(51%) 0/98(0%) Plus/Plus
Query      561  LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL  854
                +  ++R F  FDA+    L+PL R +   FP+  +V++KIY YLRTL+KPD +SA AKL QL+  PTG EIKFIE+FA LVI  G+  S+LMP++ K+
Subject    960  ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGKMRSILMPDLLKI  1253

Range 3: 974 to 1273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 45/100(45%) 0/100(0%) Minus/Minus
Query      575  LQKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHR  874
                L    +  F   G+S E +LP  +T  A SSMNLIS PVG + S* N A AD  SGF RVL+   IL+ T    GK   I   RG R     ASK  K R
Subject    974  LYMSALKIFKRSGMSIERILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGKA*PIFLPRGLRCPADTASKLPKVR  1273

Range 4: 611 to 934 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 45/108(42%) 0/108(0%) Minus/Minus
Query      209  K*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRF  532
                K*W+N E   ST *  PS       LS+  L  G    S   PSG    +P  ILY *   FK S +P +ISGG T VA    G   S   ++S +DQ* ISS +K F
Subject    611  K*WENLECMRSTQ*VSPSSN*IFFVLSRKELSKGWV*PSE*TPSG**CSFPPSILYS*HHLFKDSLDPAKISGGQTRVASIHSGRNCSSI*IKSFLDQ*CISS*KKSF  934

Nucleotide Sequence (598 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
60
120
180
240
300
360
420
480
540
598

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
176.1 311.4 22% 2.46e-43 50% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 2

Range 1: 1586 to 2080 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 82/165(50%) 0/165(0%) Plus/Plus
Query       27  SLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSGSSLSEDC  521
                SLIP S DP+FRPSS E++ ALSE+K A    GQS LFRFL+DD  + E+++SY+  L KH+KALT  F+ CGLQWFLL+QR NLKFLK   SSF +L C V K+Y+ V  QA+ P+A   L KV+V  S  +  S    +S +EL   A   +       S DC
Subject   1586  SLIPFSDDPTFRPSSTEVNLALSEVKAALEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDC  2080

Range 2: 1573 to 1965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 65/131(50%) 0/131(0%) Minus/Minus
Query       14  TYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC  406
                T TL K   ASG  AC +T  *+  T Q  S K+D+  F+N +L LCLRRNH RPQ+ K  VRAF CL    L E  +S    SS +NL  FDCP    A L SD A   S EDGLK GS +NGI+D+  C
Subject   1573  TKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASSAALTSDSARLTSVEDGLKVGSSENGIKDKITC  1965

Nucleotide Sequence (229 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
23
46
69
92
115
138
161
184
207
229

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
143.1 696.9 41% 4.229e-34 66% NC_001948
48.7 72.7 23% 2.091e-07 45% NC_009892
36.8 72.2 19% 2.85e-07 37% NC_028111
45.5 71.8 23% 3.86e-07 45% NC_014821
38.6 68.6 32% 3.328e-06 32% NC_002729

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 7130 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 55/76(72%) 0/76(0%) Plus/Plus
Query        1  ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  228
                +TF+VVTLLKSRDPTP+D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID WLGHW  AAF ++VK  + R
Subject   7130  STFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFR  7357

Range 2: 7152 to 7358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 56/69(81%) 0/69(0%) Plus/Plus
Query       23  Y*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                +*NQ I+P  I TG TLL QD  RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG
Subject   7152  F*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG  7358

Range 3: 7136 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 52/74(70%) 0/74(0%) Minus/Minus
Query        7  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK  228
                PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ   ++K
Subject   7136  PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVK  7357

Range 4: 7132 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 52/75(69%) 0/75(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV  227
                L+  +LT   NAA +QCPSQ SM   F PNSQ AEKA +CM+INF LCLVAAM*NQCLSSGVGSLDF +VTT  V
Subject   7132  LNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKV  7356

Range 5: 7156 to 7344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 45/63(71%) 0/63(0%) Plus/Plus
Query       27  EIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQI  215
                EIK S+PR *ALVLHCC KT  EID+HAV+CLFS+LRIG K   H*+LAWAL  CCI * SQI
Subject   7156  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQI  7344

Range 6: 7155 to 7358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 45/68(66%) 0/68(0%) Minus/Minus
Query       26  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS  229
                P*+  I*L  +MQH+ NAQAN QW   F PIRRLLKRH TA* SIS  VL QQC+TSAY  G D LIS
Subject   7155  P*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7358

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 7163 to 7276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 17/38(45%) 0/38(0%) Plus/Plus
Query      116  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                MP  QP +++K++ PL IGL +G+V+  L +S LP++G
Subject   7163  MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAG  7276

Range 2: 7109 to 7150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/14(64%) 0/14(0%) Plus/Plus
Query       67  YIAATRHRKKLIIM  108
                YIA TRH KK+ I+
Subject   7109  YIALTRHSKKIQIL  7150

Nerine latent virus isolate Marijiniup 4, complete genome

Sequence ID: Length: 8334 Number of Matches: 2

Range 1: 6442 to 6555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 14/38(37%) 0/38(0%) Plus/Plus
Query      116  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                MP   P + + +   + IGLGIGL +  L ++ LP++G
Subject   6442  MPLTPPPDHSNSYFAIAIGLGIGLFVFLLTRNTLPHTG  6555

Range 2: 6393 to 6458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 14/22(64%) 0/22(0%) Plus/Plus
Query       67  YIAATRHRKKLIIMQ*NAFSAT  132
                YIA TRHR KL+I+  +AF AT
Subject   6393  YIATTRHRNKLLILSGDAFDAT  6458

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 2

Range 1: 7347 to 7460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 17/38(45%) 0/38(0%) Plus/Plus
Query      116  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                MPF QP +++K++ P+ IG  + LVL  L +S LP  G
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVG  7460

Range 2: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/15(53%) 0/15(0%) Plus/Plus
Query       64  FYIAATRHRKKLIIM  108
                +Y+A TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Banana mild mosaic virus, complete genome

Sequence ID: Length: 7352 Number of Matches: 2

Range 1: 6023 to 6136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 12/38(32%) 0/38(0%) Plus/Plus
Query      116  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                M   +P ++ K +   ++ +G  +++HFLR+S LP+ G
Subject   6023  MALSRPPDYTKVLLVSSLAVGTAIIIHFLRRSELPHVG  6136

Range 2: 5913 to 6017 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 14/35(40%) 0/35(0%) Plus/Plus
Query        7  FDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ  111
                FDVVT     D    D+   Y+A TR R++L ++Q
Subject   5913  FDVVTFYHKEDLRALDRSDVYVALTRVREELRLLQ  6017

Nucleotide Sequence (1262 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
127
254
381
508
635
762
889
1016
1143
1262

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
695.3 3479.6 30% 0 52% NC_001948
139.4 455.0 28% 7.381e-64 31% NC_025388
138.5 447.7 24% 9.658e-63 31% NC_028975
134.9 448.7 30% 1.994e-61 31% NC_028868
132.1 478.4 27% 1.594e-68 29% NC_009892

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 12

Range 1: 7516 to 8520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
695.3 bits(1511) 0.0 301/335(90%) 0/335(0%) Plus/Plus
Query      257  YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  1261
                YMY LFGILVLVG  IA  ILAHVDS++G++ GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS   EEIDYHC*   MAS  G+LPGESNEAFEARLKSLELARAQKQPEGSN PP L GILAKRKR+IENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI+E  QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGG+KRAPTKAEMVANIASFEV+VLRQ MAEGKRSSNLGEISGGTAGALIN
Subject   7516  YMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQVLRQAMAEGKRSSNLGEISGGTAGALIN  8520

Range 2: 7261 to 7458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 38/66(58%) 0/66(0%) Plus/Plus
Query        2  LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF  199
                LRIG K   H*+LAWAL  CCI * SQI   QGTT IN    GVTGT  K *  VV ++ S ALG+
Subject   7261  LRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGY  7458

Range 3: 7533 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
565.1 bits(1227) 0.0 264/329(80%) 0/329(0%) Minus/Minus
Query      274  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  1260
                L+ APAVPPLISPRLELR PSAI CLST TSKEAILATISA VGALL PPF SSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPAISDLFRSQ GL PI+VDL ELPTSEQ RAIS+AT N + S MPDSPNARI+SSIAPSS+T G+ TT SCF TS MSTVFE AFS+ L  LARMP R GG LEPSGCF*ALA+S DFS ASKASFDSPG+ P  LAI   *Q**SISS   LTPKAFKPPSTS TV+A ASLGPQFSI IDSPVALM+QP   PLLLST ARI +AI  PT+TRIP
Subject   7533  LMSAPAVPPLISPRLELRLPSAIACLST*TSKEAILATISAFVGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIP  8519

Range 4: 7260 to 7481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 44/74(59%) 0/74(0%) Minus/Minus
Query        1  HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR  222
                HKILRL + PRA E L  TT+ Y F  VPVTP++ +LM VVP*+  I*L  +MQH+ NAQAN QW   F PIRR
Subject   7260  HKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRR  7481

Range 5: 7998 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.5 bits(547) 0.0 114/174(66%) 0/174(0%) Plus/Plus
Query      739  CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ  1260
                C+G*RCNR  DS I *+WH   R++*   RY T LL*CW*L ++N DW+ES+L*P+ + N W+ KG D+   ILHVLCKNRVE+PSGDGD+T *LGQE I**+*KVCSL*    SHR*E A*+KGW *+SSN+S*DG *Y LF*G  AQT+YG*R+AE Q WRD*W N WC++Q
Subject   7998  CHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNES*DGC*YRLF*GSSAQTSYG*RQAEFQPWRD*WWNGWCTHQ  8519

Range 6: 7260 to 7544 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 87/95(92%) 0/95(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSG  285
                PANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSG+FGQSENFVPL++VI L A I+VLSVWNSG
Subject   7260  PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG  7544

Range 7: 7590 to 7976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 69/129(53%) 0/129(0%) Plus/Plus
Query      331  QQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEAR  717
                QQ*W    L H G+  VN +*+L PK*G C +  G A RFEGFRG*P  *RN*LSLL  L G+   +  R*+K* F*   +I G   SSKAA RF* T+ S WHSC  +E + +C+FK+ GH GG E R
Subject   7590  QQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFETR  7976

Range 8: 7261 to 8520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
543.1 bits(1179) 0.0 247/420(59%) 0/420(0%) Minus/Minus
Query        2  IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ  1261
                +D+ TS S TNLSK+G PL+FSHSLSEHL+LKRG+IS+HLSF WSS N+TL FKR LICDS+E++KGCKLFI IKS LGP+S W PRLQMD+PHDFCIVHAKS    H PY  S F  + VT+ TL+NQG* L ATNIRA+ C IY ++KL A  YAR T+C+NQL+YCTFIH+I   H+R V Q+LPHVH  *K I  +PL F KNAT++R  +RTFRLLLSS  LQRF  G KS I* T +      H   LTMIINFF + ANP*SLQTS H L+   K LTWA + N  *L   P E T++V   AV M KD   N ++Y++QNSKQ +H+   L L Q L+AQNSQ  + +QS G    DH+ L F  RPCNA    ID CCPL+  +LT   NAA +QCPSQ SM   F PNSQ
Subject   7261  VDECTSRSTTNLSKVGTPLAFSHSLSEHLNLKRGDISNHLSFRWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATESRWCIRTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQ  8520

Range 9: 7262 to 8476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
446.9 bits(969) 0.0 234/405(58%) 0/405(0%) Plus/Plus
Query        3  CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAP  1217
                CELG+N++ ID WLGHW  AAF ++VK  + RGQH SI +  ALQGR++K+N+LWS+ ++P+LW    +*EFCA N C+  N +H C +CLEFW  * L L   SL M TA++ T  V S G   SQ+*L+  AQVR L    R+C EV*RL*GLA+L+KKLIIIVK+  W+       V+QM+LL+P *N WS  ELKSS KVL + L  VAFL   RG  +M FQ+ WT GR *+T    +  M WMKVQ* S*F H V+LA  +A +L   *I H  ALMLVA + QP*L RV  VT*   K L  *G+*    DFACTMQKSCG SIWRRG+H L GPR+DLM+MKSLQPL  S ESQMR RL QRV L+ELQ KLRW LI PLLR +CSDKLWLK SG P
Subject   7262  CELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVLMHHLLSVAFLPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQRKLRWLLISPLLRFKCSDKLWLKASGVP  8476

Range 10: 8027 to 8509 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 102/161(63%) 0/161(0%) Minus/Minus
Query      768  HQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLES  1250
                HQ F H*SLQ W+SA LQP* V*A  PQKR+Y*+PSQL LEL * HPL+QA SHL*L  ++QRLQTFH H*I SWP+* V SPSPDG STRFLHSTCKI    S PL  Q F    GH+ DS QS L   SYQHQS+ V YL      R  +CQ H+M ES
Subject   8027  HQPFHH*SLQGWNSACLQP*LV*ALEPQKRRY*QPSQLSLELF*FHPLVQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES  8509

Range 11: 7262 to 7663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 89/134(66%) 0/134(0%) Minus/Minus
Query        3  GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA  404
                G + Q  LT   P * N    HYCC H QG G QLQ L  PEFQTD+T M A+  +T IKGTKFSD P  PELG DC GPQ V+L VPSL*RPP GN* MLSPE G+FDFLRKCST PMPKP VNGV+V AQFA
Subject   7262  GRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFA  7663

Range 12: 7724 to 7975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 44/84(52%) 0/84(0%) Minus/Minus
Query      465  RASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG*  716
                R S PP+CP  LK H  * S   QECH E  V *NL AAFEL   P I    QK HL H        P++ FNNDNQFL Q+G*
Subject   7724  RVSKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*  7975

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 6

Range 1: 8207 to 8548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 60/114(53%) 0/114(0%) Plus/Plus
Query      908  RSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  1249
                R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +ALE + G+ R P   E+VA  A+  V + R   A+ K +S   E++GG AG
Subject   8207  RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRAEAAQDKNASTAHEVTGGRAG  8548

Range 2: 6875 to 7126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 39/84(46%) 0/84(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA  252
                P +  + + P+ +GLG+G+V+  L +S LP  GDN+H  PHGG Y DGTK I+YCGP+ SFPSS LF         I+V+++ A
Subject   6875  PPDNTRVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLPHGGNYLDGTKRISYCGPRDSFPSSNLFKGGTFSAICIVVLLVFA  7126

Range 3: 7146 to 7259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 14/38(37%) 0/38(0%) Plus/Plus
Query      287  LVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENC  400
                L+G  +A +++  +   N ++ GCLI  TGES++++NC
Subject   7146  LIGLTVALVVVGLLHMLNSNHDGCLIVITGESVVVKNC  7259

Range 4: 8027 to 8191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 17/55(31%) 0/55(0%) Plus/Plus
Query      731  SPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPF  895
                SP+V     I+ +      +G+   D      DIAR+C+D GSS+ +  +G S +
Subject   8027  SPDVATAENIEYIRADLVRAGVPTKDITFAMWDIARYCADAGSSESTEFVGTSSY  8191

Range 5: 8206 to 8559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 53/118(45%) 0/118(0%) Minus/Minus
Query      907  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDL  1260
                L R PA+PP+ S  +E     A   L  +T   A  AT S+  G L +P   S A    T  KKSKAANF FSL PF     GG+ V+  +F TI A*  QNL  VV  LI  AIS L
Subject   8206  LERGPALPPVTSWAVEAFLSWAASALCKITPLLA*AATNSS**GFLTSPFSGSKAALFETCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLITAAISIL  8559

Range 6: 6901 to 7062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 26/54(48%) 0/54(0%) Minus/Minus
Query       27  LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG  188
                LG   LGPQ ++L VPS * PP G  C LSP  G+ D ++   T P PKP   G
Subject   6901  LGKLSLGPQ*LILFVPSK*FPP*GRLCTLSPTEGRVDLVKHQMTMPTPKPTAMG  7062

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 6

Range 1: 8222 to 8569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 59/116(51%) 0/116(0%) Plus/Plus
Query      902  LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  1249
                + R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +ALE + G+ R P   E+VA  A+  V + R   A+ K +S   E++GG AG
Subject   8222  VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRTESAQDKNASTAHEVTGGRAG  8569

Range 2: 6875 to 7126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 40/84(48%) 0/84(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA  252
                P +  K + P+ +GLG+G+V+  L +S LP  GDN+H  PHGG Y DGTK I YCGP+ SFPSS LF         I+V+++ A
Subject   6875  PPDNTKVLLPIAVGLGVGVVIWCLTRSTLPSVGDNVHSLPHGGNYMDGTKRINYCGPRDSFPSSNLFKGGTFSAICIVVLLVFA  7126

Range 3: 8048 to 8212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 18/55(33%) 0/55(0%) Plus/Plus
Query      731  SPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPF  895
                SP+V     I+ +      +G+ + D      DIAR+C+D GSS+ +  IG S +
Subject   8048  SPDVATAENIEYIRADLVRAGVPKKDLTFAMWDIARYCADAGSSESTEFIGTSSY  8212

Range 4: 7146 to 7292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 15/49(31%) 0/49(0%) Plus/Plus
Query      287  LVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK  433
                L+G  +A  +   +   +    GCLI  TGES++++NC  +      VK
Subject   7146  LIGLTVALAVAGLLHILSSAQEGCLIVITGESVVVKNCVYTNEFIGLVK  7292

Range 5: 8227 to 8568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 51/114(45%) 0/114(0%) Minus/Minus
Query      907  PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDL  1248
                PA PP+ S  +E     A      +T   A  AT S+  G L +P   S A    T  KKSKAANF FSL P      GGI V+  +FHTI A*  QNLR VV  L+  AIS L
Subject   8227  PARPPVTSCAVEAFLS*ADSVRCRITPLLACAATNSS*YGFLTSPFSGSKAALLDTCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLMTAAISIL  8568

Range 6: 6901 to 7062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 25/54(46%) 0/54(0%) Minus/Minus
Query       27  LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG  188
                LG   LGPQ  +  VPS+* PP G  C LSP  G+ D ++   T P PKP   G
Subject   6901  LGKLSLGPQ*FIRFVPSM*FPPWGRLCTLSPTEGRVDLVKHQITTPTPKPTAMG  7062

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 7

Range 1: 8162 to 8509 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 55/116(47%) 0/116(0%) Plus/Plus
Query      902  LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  1249
                + R EIA +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF  V++ +ALE + G+ R P   E+VA+  +  + + R   A+ K  S   E++GG AG
Subject   8162  VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAALEPENGLVREPNHEELVASQVNKGISLHRTEAAQDKNVSTAHEVTGGRAG  8509

Range 2: 6840 to 7091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 41/84(49%) 0/84(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA  252
                P +  + + P+ IGLG+G+V+  L +S LP  GDNIH  PHGG Y DGTK I+YCGPK SFPSS LF         ++V+++ A
Subject   6840  PPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISYCGPKNSFPSSNLFKGGAFSAICVVVLLVFA  7091

Range 3: 7111 to 7257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 16/49(33%) 0/49(0%) Plus/Plus
Query      287  LVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK  433
                L+G   A + +  +   N    GCLI  +GES++I+NC  +    + VK
Subject   7111  LIGLIAALVAVVLLHMLNSGQEGCLIIISGESVVIKNCVYTSEFINLVK  7257

Range 4: 7988 to 8152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 17/55(31%) 0/55(0%) Plus/Plus
Query      731  SPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPF  895
                SP++     I+ +      +G+ E        DIAR+C+D GSS  +  IG S +
Subject   7988  SPDISTAEEIEHIRSDLVRAGVPESTLTFSMWDIARYCADAGSSASTEFIGTSSY  8152

Range 5: 8167 to 8412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 38/82(46%) 0/82(0%) Minus/Minus
Query      907  ATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDL  1152
                AT S+ +G+  +P   SSA    T  KKS A NF F L PF     GG+ V   +F TIFA*  Q   RVV  LI  AIS L
Subject   8167  ATNSSWLGSRTSPFSGSSAALFETCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLITEAISIL  8412

Range 6: 6866 to 7027 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 25/54(46%) 0/54(0%) Minus/Minus
Query       27  LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG  188
                LG    GPQ ++L VPS * PPCG   +LSP  G  D +R   T P P+P+  G
Subject   6866  LGKLFFGPQ*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIG  7027

Range 7: 7176 to 7223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 8/16(50%) 0/16(0%) Minus/Minus
Query      352  QFSINIDSPVALMRQP  399
                QF I  DSP+ +++QP
Subject   7176  QFLITTDSPLIIIKQP  7223

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 6

Range 1: 8549 to 8854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 53/102(52%) 0/102(0%) Plus/Plus
Query      944  TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG  1249
                TLR+FC YYAK+VWN+ LET  PPA W+ KG+ +  K+AAFDFF GV   +ALE   G+ R PT +E VAN    E    R    +G +S+N+GEI+GG AG
Subject   8549  TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAALEPVDGIIRKPTNSERVANETMKEAMSFRAAARDGTQSTNIGEITGGKAG  8854

Range 2: 7178 to 7381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 38/68(56%) 0/68(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFG  204
                P +++K++ PL IGL +G+V+  L +S LP++GDNIH  PHGG Y DGTK I YCGPK+SFP+ G+ G
Subject   7178  PPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG  7381

Range 3: 8261 to 8533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 31/91(34%) 0/91(0%) Plus/Plus
Query      662  VIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR  934
                V+ + +SK + +R++   +    + +V  E  I ++   F + G+S      V + IARHC+DVGSS +S LIG  P  D+   E+A II+
Subject   8261  VVGSGMSKRLSIRDLAAIDYKPQAGSVASEEKISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK  8533

Range 4: 7446 to 7601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 15/52(29%) 0/52(0%) Plus/Plus
Query      278  ILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK  433
                +++ V AA+  LI+ ++         C I  TGES+ + NC  S      +K
Subject   7446  VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLSPEFLEVLK  7601

Range 5: 8518 to 8853 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 50/112(45%) 0/112(0%) Minus/Minus
Query      913  PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAIS  1248
                PA+PP+ISP L L  PS    L  + S     AT+S LVG L+ P   S A    TP KKSKAA    SL P L Q+AGG+ VS   F TI A*  QN R+V  ++++  ++
Subject   8518  PALPPVISPMLVL*VPSLAAALKDIASFIVSFATLSELVGFLMIPSTGSRAAELSTP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLLMIVA  8853

Range 6: 7204 to 7380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 25/59(42%) 0/59(0%) Minus/Minus
Query       27  PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG  203
                PK+P +G    GPQ ++ LVPS * PP G * MLSP  G    ++   T P  +P+  G
Subject   7204  PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKG  7380

Nucleotide Sequence (1029 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
103
206
309
412
515
618
721
824
927
1029

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 3332 to 4357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
756.7 bits(1645) 0.0 312/342(91%) 0/342(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  1027
                DGLALKAGIRSFVESE  V   LS+P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAG
Subject   3332  DGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAG  4357

Range 2: 3331 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
535.3 bits(1162) 0.0 267/342(78%) 0/342(0%) Minus/Minus
Query        1  PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  1026
                PAF P TFLRKTSKVTTS PSFFDLPA  TL  SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPV+PPSKHP +FSA SKLGK VI DPF E +SRADRLTFR+SSTFML*GPLPIFSTCLMCS VMSN A++ P GLITSISP  SHLAQMSKASKASAKYI+ RPPP* SSSK+*LVLGLH+* +TSTSRLPSA+AMAVIMQP  GA G K*FD + +IPHRGHS SPNFQLTSYSGV+ I LTWC  QN AIISFSA*AFS +C  + G ER+  T  SLST D IPAF+A PS
Subject   3331  PAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPS  4356

Range 3: 3362 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
304.4 bits(658) 0.0 143/298(48%) 0/298(0%) Minus/Minus
Query       32  IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHER  925
                IHF + FD*I *S    +K Y+F+ R  HE LV ETL SPKCTKH+ Q P  N+ S +T KPR  I + LITY+AS    Q  L+ F PLK W++ Y  P+  K+++  S +  Q IH YALR +T   +MP V I YVKQ R     IN+FN +I ITF  +V+ LKSF  IHH++ P LT L K++I A  T +I H+  TPSKC* NGC HA I+ G  L++I* + +NST* PL FP+ P + IFWC   + ++VPNAE* +H I  ISI  +L    W  K       T HER
Subject   3362  IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHER  4255

Range 4: 3346 to 4239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
254.0 bits(548) 0.0 136/298(46%) 0/298(0%) Plus/Plus
Query       16  EGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK  909
                +GR  + RG+*      SF P++      +CLCR+*+D +IL  AP +    +TRI*  LE+ G+*VA MWN +  +KS  T+ P+ WLHD+SHC STWKA*    +L +* +H S+ * A+S  G  +DVF  SF*G  HL  M* +WR+*S *S   + C V*HN * H AC ++ *  S+HK G* A+   I     F+E V +N+  K * G K + + A   +WR K**E+   K LA W + +*+* KG+D  AWYIWGW+EF +QE HE++*  I N+C +    S+FNQK
Subject   3346  KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK  4239

Range 5: 4285 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 12/24(50%) 0/24(0%) Plus/Plus
Query      955  IKEGGLGCRYL*SLP*ESYRPKGW  1026
                +KEG +GC   *  P*+S R +GW
Subject   4285  VKEGRVGCSNF*GFP*KSCRIEGW  4356

Range 6: 3504 to 4256 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 118/251(47%) 0/251(0%) Minus/Minus
Query      174  HPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILV  926
                HPF   F*LN L+    +Q L+I+ Q  S*+SC  NS QPQMYQA+ S P  * Q   +Q+AK L+ * SHHL RQ    A+    F P+Q+L + L  T S K     I *  A HP LC E  Y   +HA C H LCQT Q     D* LQ  H +HI  +C++PQKL  NTS   P  D A Q+ D C  Y  N     HAFQVL QWL SC+H  G  V +DL    +FHI ATH P+ S+  HILV
Subject   3504  HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV  4256

Range 7: 3348 to 3482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 17/45(38%) 0/45(0%) Minus/Minus
Query       18  GA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLP  152
                GA  RI +S H  HKH   +    LG K+L+    H PR   + P
Subject   3348  GAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRP  3482

Range 8: 3504 to 4190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.2 bits(424) 0.0 112/229(49%) 0/229(0%) Plus/Plus
Query      174  HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN  860
                HQNM+  G+ GK+SG YVEF   +QI  N  P  M A* QPL QHLEGV+  C I  V  A I  L+S+V+ G   *CI  KLLR  T   NV+ M +LK LI+   +L CLT* M+T GM ++ V  L+A*+WM+C + +D     F * G +*   Q L G K+ +  C   *LA *VMR+  +Q+LG LV  LL L++G+*  CLVHLGL RVS TR S*+ L+ N
Subject   3504  HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN  4190

Range 9: 4224 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 22/44(50%) 0/44(0%) Plus/Plus
Query      894  RIQSKGT*KWMKSVXXXXXXXXXXXXGMSLPLKSSLGKLQA*RL  1025
                +IQSK   KWM + +  +Q  QRR+ GM   L+ SL KLQ *RL
Subject   4224  QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RL  4355

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 3

Range 1: 3430 to 4299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
264.5 bits(571) 0.0 117/290(40%) 0/290(0%) Plus/Plus
Query       47  ESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  916
                +  +   +  P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L      G TGV+        K   A +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3430  DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4299

Range 2: 3567 to 3917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 40/117(34%) 0/117(0%) Minus/Minus
Query      184  CLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS  534
                C  CSF   N A + P  L    SP  S L Q+   S +  +  I +P P  +SSK     GL     TSTS   SA+A+A++  PL G QG K   ++  +     S   N Q+ S
Subject   3567  CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS  3917

Range 3: 4164 to 4265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/34(53%) 0/34(0%) Minus/Minus
Query      781  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVN  882
                LG+T V  FP D  M  L R+LFP PNVP   +N
Subject   4164  LGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN  4265

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 5

Range 1: 3299 to 4030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 84/244(34%) 0/244(0%) Plus/Plus
Query       62  SALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVV  793
                + ++   + +Q+  + +AE E +A FC  + ++L +++    V+W F   +      L  + NHF PC P+NGC++ AIASALGRRE+DVL  L +P    ++E+ C G G  +  L   FE F I A+ D  G +  +N  G+ISA F +  EH+ H++++     S  + +L  V +SAL LL +NGS+I+Y PS +RA+ L   L  G TGV+  E +N  +  + G+  +  +++  T++
Subject   3299  NGITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII  4030

Range 2: 4030 to 4107 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 13/26(50%) 0/26(0%) Plus/Plus
Query      796  WYIWGWKEFPIQELHEEI*RKICNIC  873
                WY+W W E  I E+H +I RK  N C
Subject   4030  WYLWMW*EHSI*EVHIKITRKSYNFC  4107

Range 3: 3995 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 32/68(47%) 0/68(0%) Plus/Plus
Query      761  SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKK  964
                ++I +R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K +  GK  K
Subject   3995  ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 4: 3466 to 3633 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 24/56(43%) 0/56(0%) Minus/Minus
Query      229  RPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKI  396
                +P P  +SS   L  GL K   TS S LP ADA+A+  QPL G  G K*  +  ++
Subject   3466  KPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV  3633

Range 5: 4030 to 4128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/33(55%) 0/33(0%) Minus/Minus
Query      796  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVP  894
                AR  LGET V  FP D  M  L R L P P VP
Subject   4030  ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP  4128

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 3463 to 4095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.8 bits(432) 0.0 86/211(41%) 0/211(0%) Plus/Plus
Query       77  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  709
                P + KQL  N +AE E +A FC  + ++L ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L +P+   +F+E+ +G G ++  L+  FE F IC   D  GE+ ++N GGRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L   L  G TGV+
Subject   3463  PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL  4095

Range 2: 4153 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 29/50(58%) 0/50(0%) Plus/Plus
Query      767  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  916
                +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4153  VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 3: 3570 to 3911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 43/114(38%) 0/114(0%) Minus/Minus
Query      184  CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS  525
                CSF   N A + PP L    SP  S L Q+ K SK+  +  I +P P  +SS      GL +   TSTS    A+AMA++ QP  G QG K*   + K+     S   N Q+ S
Subject   3570  CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS  3911

Range 4: 4161 to 4280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/40(50%) 0/40(0%) Minus/Minus
Query      775  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  894
                AR  LGET V  FP D  M  L R+L P P VP    N L
Subject   4161  ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL  4280

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 3459 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 84/211(40%) 0/211(0%) Plus/Plus
Query       77  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  709
                P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AI+SAL RREVDVL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG+++ Y PS +RA  L      G TGV+
Subject   3459  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL  4091

Range 2: 4149 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 29/50(58%) 0/50(0%) Plus/Plus
Query      767  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  916
                + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4149  VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 3: 3632 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 35/92(38%) 0/92(0%) Minus/Minus
Query      250  CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*  525
                CSF   N A + P  L    SP  S L Q+ K S    +  + +P P  +SSK     GL     TSTS   SA+ +A+I  P  G QG K*
Subject   3632  CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*  3907

Range 4: 4157 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/36(50%) 0/36(0%) Minus/Minus
Query      775  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  882
                LGET V  FP D  M  L ++LFP PNVP   ++ L
Subject   4157  LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL  4264

Nucleotide Sequence (1428 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
143
286
429
572
715
858
1001
1144
1287
1428

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
1048.1 3717.6 34% 0 50% NC_001948
416.7 1071.7 48% 7.947e-148 28% NC_012038
419.9 968.9 40% 1.817e-153 33% NC_031089
411.2 953.8 41% 4.208e-148 28% NC_017859
250.3 1024.5 33% 2.599e-150 32% NC_029087

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 10

Range 1: 4262 to 5686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1048.1 bits(2281) 0.0 444/475(93%) 0/475(0%) Plus/Plus
Query        2  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  1426
                CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYAIFHNMHDFLLARSKGPLDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQD+DCEVEE+ESECSNEEWFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ +  EAV+EFE KKASKSAATIENH+GRSCRDWLLDVALIFMKSQH
Subject   4262  CKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQDEDCEVEEMESECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQH  5686

Range 2: 4264 to 5121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
546.3 bits(1186) 0.0 237/286(83%) 0/286(0%) Minus/Minus
Query        4  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL  861
                ITF+ GSPH+FSSLTPSF PMLTLKPLKKLGSPGSKS +TFSPL AVKK * G PAKC+RKLSTL+PVMFT+S+LWLKRDKAV+HRRSSV*KESCD+RIPP LKFNPVDSP VSVSCFIPK*DWTIFFSSKLET+ ASKGPFDLA+RKSCILWK+A*SAKAAV+EPFLK  G+L+SNIGFTNL LS LYLY  PSS+L+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI  +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA  TL
Subject   4264  ITFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMTFSPLLAVKKW*RGLPAKCERKLSTLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVSCFIPK*DWTIFFSSKLETKTASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATL  5121

Range 3: 5188 to 5688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
279.2 bits(603) 0.0 126/167(75%) 0/167(0%) Minus/Minus
Query      928  QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1428
                QC DF+KIRATS+NQSL DLP *FSIVAALLLAFF+SNS TAS     L LAF+G  +RK S+KNFPYG ARL+ AAST GFENLRRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P  TSR SF AI PTHLALVDS+LL G+WVLNH
Subject   5188  QCCDFIKIRATSNNQSLHDLPA*FSIVAALLLAFFASNSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH  5688

Range 4: 4301 to 5686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
552.8 bits(1200) 0.0 253/462(55%) 0/462(0%) Minus/Minus
Query       41  VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP  1426
                VL LH+N  NI  PIP   T MI Y  CT    L LK  + F     I+   QW+   E + *+ PIW   PQF SF+L L KF+T  + HE+G+*II+FM W+ AFK  TCIAQLL SSTP+ +KELL  FITT+H  +  Q H ++PPGPG* Q+T  D+GF+PF I*AF L L NF I+IL +EKHN *P +TT LLL + FI  NAN++  +EV LT +Q+ Y ILP F C*K++E F SK+R+K FHPQT DVH I+IVA+ R*S +PP IICVKGIM*Y+N  + E+QPS FT+ + EL HSKVGLD     K  N +GIQ   *   E++MHI+E+ +IS+SGSH ALFEVT  S* +H ++KPPA  V+PI    +Q +YVTL SAQN  I LR+ICALT ITSK +ES+T  NK+ *IDV+RR+ L+ IK+H + SL +CNF KE+ K   IP
Subject   4301  VL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISYDILPTFGC*KMVEGFASKVREKTFHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECELFHSKVGLDYLFLLKTGNQNGIQGTF*PRQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP  5686

Range 5: 4279 to 5688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
442.8 bits(960) 0.0 233/470(50%) 0/470(0%) Plus/Plus
Query       19  RQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVDXXXXXXXXXXXXEHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL  1428
                R +KEG +GC   *  P*+S R +GW L D **   + SW+HRSM + Y+ * FH +CW*S+SKHI* +K    FGR* E*H   A  + +*V   + EVC+ +V  K  + LQKGL DCRF *L + P YA*     +K   GC   F+ * +++ PVLLWNE  H +  *I WVE Q W +S+IT*FLSHR*S V   FIS  PQ    EHHR EGGK S+A CW+T L  FNS+K GEC    A R*A LL W   *HW E*R   GE +W* + K YAFP  R* L S*   V MLK* MV NP+P++* G+NQGQVG  +G+E      +WL*ND T+L*    W   A EQCM*++*KH+ K *R *F++L HG  + S IF+A   SC+ EA + IWE+    FP +   E +      +*S   +*G+E   +CS+ R+S R*++ GLV  CC +F+EV+TL
Subject   4279  R*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRSLGCRFGFQF*GEKDSPVLLWNETAHTHIW*INWVEFQKWGNSHIT*FLSHR*SAVAYCFISLQPQFGFGEHHRSEGGKFSLALCWQTPLPFFNSQKWGECHTRFAPR*A*LLQWL*R*HWKE*RC*GGEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTTL  5688

Range 6: 4350 to 5513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
413.0 bits(895) 0.0 206/388(53%) 0/388(0%) Minus/Minus
Query       90  GKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  1253
                GK  ++ SHM   AS+ QL+  A KI*D   +P* R LNH+LY L  CFQ  HMHCS+A  FH    QR V SFHNH +     S P + PTWPWL P Y  G GF*TI HLSI T + QL N HL  GKA* L   HH  SP   LHS QC* *+H*RS AH  A+ + HSP F LLK+ R V QQ+A E+FPPS+ *CS + +CG*+EIK   T DHLCERNHVI*E  H *+STQ IH+ * *  SFQSRTG     Q+ K   HP+  L     +HAY G+  NQ+KRQS SPF*S   +L +T   QTS     TY    +A  +CHS QRPK    F +HMCFD DHQQ +*K H  *   IDRC QE     HQ+S + QP
Subject   4350  GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AHLGANLV*HSPHFWLLKNGRGVCQQSARENFPPSDL*CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AVSFQSRTGLSFSPQNWKPKRHPRDLLTSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP  5513

Range 7: 5619 to 5687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 13/23(57%) 0/23(0%) Minus/Minus
Query     1359  SVETS*KLGQHPATNPYKIYRND  1427
                SV TS*K  QH  TNP   Y +D
Subject   5619  SVVTS*KSEQHLITNPCMTYLHD  5687

Range 8: 4803 to 5531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.8 bits(576) 0.0 139/243(57%) 0/243(0%) Plus/Plus
Query      543  G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*  1271
                G* S M  F YHMIPFTQMI GG  LYL  ATI I *TS V*GWK F R LL N S  F*Q K GRM    C  VS TS +   LAL  MK   RRS VV  G*+LCFS  KM I KL+  S NAQM+NG KP S *V W+QPGPGG  +W *++  +  VVMK  N+SL + GVE  SN*AMHV+ LKA+ Q IK MIQ*P SW   +V NF+S + KL N*G  +HMG+ Y  LS+ + H*
Subject   4803  G*ISKMGEFSYHMIPFTQMIGGGLLLYLASATIWIW*TSQV*GWKVFSRTLLANPSTIF*QPKVGRMSYEICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*  5531

Range 9: 4467 to 4760 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 53/98(54%) 0/98(0%) Plus/Plus
Query      207  KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT  500
                KAHM  K+I  FWAL+RVTY  C +   IG T +AGGL* +C  QD  VTSKRA *LPL LI   S ICM  S   Q+  WMP  F  L++++ SSPT
Subject   4467  KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVPWMPFWFPVLRRKR*SSPT  4760

Range 10: 4317 to 4412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 19/32(59%) 0/32(0%) Plus/Plus
Query       57  LKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  152
                L+ SL KLQ *RL   * LM+ S  LL TSIY
Subject   4317  LRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY  4412

Helleborus net necrosis virus, complete genome

Sequence ID: Length: 8542 Number of Matches: 12

Range 1: 4073 to 5062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
416.7 bits(903) 0.0 181/330(55%) 0/330(0%) Plus/Plus
Query      434  SKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ  1423
                SK   +  LV  F+EKKI++++F   +  LTFGESTG  F++G ILI+   F   ++RW+TALSRFS NL  +N+T    E+   +   + L  F T  +  + +R +LPGEP+F + +   +G++  VRE+KL GDPWLK M+FLGQ++D E  E+E     E WFKTH+PL  +ES RA WV     KE+REVR GY  + QF DEH   R + L+NA ERFE+IYPRHK +D+VTFLMAV+KRL+FSKP VE AKL  A+ YGK+LLD FL  VPL A HN   M  +VR+FEEKK SKSAATIENHSGRSCRDWL DV LIFMKSQ
Subject   4073  SKVFTEVFLVPGFDEKKIIKAHFPNCENILTFGESTGRTFEYGSILITQSGFSVCEQRWITALSRFSRNLLFLNLTEASFEAIAENMDDRALGKFFTQSASIDDLRKILPGEPHFADYYVPKLGKDHCVREDKLAGDPWLKTMVFLGQEEDVEKSEIEEAILAEPWFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQ  5062

Range 2: 3674 to 3997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 50/108(46%) 0/108(0%) Plus/Plus
Query       29  KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPC  352
                K   ++V TFE FL+   GLKAGH ++ DE+QL+PPGY+DL   ++     + + GDPCQS YDS+ DR+I     SDI ++L    Y++   SRRF N  F  RLPC
Subject   3674  KNCNFNVCTFETFLKLAKGLKAGHTLVLDEIQLYPPGYLDLVACLVPRSCHLFVVGDPCQSNYDSEGDRSIFSGAASDIHKMLANAKYKFVTRSRRFFNKTFSGRLPC  3997

Range 3: 4567 to 5058 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 82/164(50%) 0/164(0%) Minus/Minus
Query      928  DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1419
                DF+ I  TS++QSLQ+ PE FSIVAALLL FFSS S T  ++   L  AF+GT  +K+SS+ FP   A  + A ST G ENL+RF TA+RKVT SL LCLG M S  S A ++   L   CSS N  +  *P  TS  SF   F T  A   S    G  VLNH
Subject   4567  DFINISPTSASQSLQERPEWFSIVAALLLVFFSSKSLTLLAMNSGLCWAFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH  5058

Range 4: 3673 to 3993 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 44/107(41%) 0/107(0%) Minus/Minus
Query       28  GNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF  348
                G+L   +   NLRL    LY   +S L MSL +  K+  S   S +L*QGSP  +    L   +  RS *PGG +* SS+    PAF+P+  LR  SKV T +  FF
Subject   3673  GSLPEKVLLKNLRLLVTNLYFALASILCMSLAAPEKMLRSPSLS*LL*QGSPTTKR*QLLGTKQATRSK*PGGYN*ISSRTRVCPAFKPLANLRNVSKVQTLKLQFF  3993

Range 5: 4087 to 4314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 31/76(41%) 0/76(0%) Minus/Minus
Query      448  STLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMAS  675
                S L  V F +S+     + AV H  S   K  C IR+ P  K  PVDSP V +   + K    IFFSSK  TR  S
Subject   4087  SKLASVKFKKSKFLENLESAVIHLCSHTLKPLCVIRMEPYSKVLPVDSPNVKIFSQLGKCALMIFFSSKPGTRKTS  4314

Range 6: 4388 to 4531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 17/48(35%) 0/48(0%) Minus/Minus
Query      749  FAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVP  892
                F I+ LAKE H   PRIT++L+LS+  +        I+++   G+  P
Subject   4388  FNILFLAKEHHCFQPRITSKLILSNAVVFAKLWYIVIRKMWFPGQYFP  4531

Range 7: 4865 to 5062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 29/66(44%) 0/66(0%) Minus/Minus
Query     1226  LRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPI  1423
                L LH+   +I  PIPTR++ M+FYC CT  C LF + SH+  H+  IV   Q +  +E VK* L +
Subject   4865  LGLHKYKPHIC*PIPTRASRMVFYCCCTLTCLLFFEISHTPGHEFRIVLGFQRHKFQEIVK*ILSV  5062

Range 8: 4565 to 4801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 22/79(28%) 0/79(0%) Minus/Minus
Query      926  NGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPF  1162
                +GH+K + I  F+ W+  FK+ + I +  +    V + +L+   I  +HF+VF    + +P     F +T  ++ FEP+
Subject   4565  HGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPW  4801

Range 9: 4456 to 4500 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 11/15(73%) 0/15(0%) Minus/Minus
Query      817  ITFSQGSPHSFSSLT  861
                I F+QGSP S SSLT
Subject   4456  IVFNQGSPASLSSLT  4500

Range 10: 4945 to 5067 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 19/41(46%) 0/41(0%) Plus/Plus
Query     1306  CARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL  1428
                C R   KE K +CS+NRK F  +L*GL + C    +EV  L
Subject   4945  CERFRRKEDK*ECSNNRKPFWTLL*GLASRCGAYIYEVPDL  5067

Range 11: 4461 to 4601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 20/47(43%) 0/47(0%) Plus/Plus
Query      822  ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTW  962
                ER S +VILG*+   SLAK  + K + L     + +GSK  S  V W
Subject   4461  ERISLLVILG*KQWCSLAKKRMLKSQRLKKRYWLNHGSKLTSPSVRW  4601

Range 12: 3763 to 3921 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 18/53(34%) 0/53(0%) Plus/Plus
Query      118  SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVA  276
                +S +P+WL  S     SQ       W SLSK +*  +   +F R  +*H + A
Subject   3763  NSIVPTWLFGSCCLFGSQELSPFCRWGSLSK*L*Q*R*PQHFLRGRK*HTQNA  3921

Ligustrum virus A isolate SK, complete genome

Sequence ID: Length: 8525 Number of Matches: 8

Range 1: 4133 to 5110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
419.9 bits(910) 0.0 180/326(55%) 0/326(0%) Plus/Plus
Query      446  LDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ  1423
                L+AILVSSF+EKKIV SY G     +TFGESTGL F +G ++IS  S  T ++RW+TALSRF  N+ LVN+T +        + GK L+ FLT  +    +   LPGEP F + +++++G++EGV+EEKL GDPWLK M+FLGQ +DCE  +  +    E+WFKTH+P ++LE  RA WV K+  KE REVR GY  + QF DEH     +QL+NA ERFE+IYPRH+ ND+VTF+MAV+KRL+FS P  E  KL +AK YGKFLLD FL K+PL   H+  +M  A + FE+KK SKSAATIENHS RSCRDWL+D+ LIF KSQ
Subject   4133  LEAILVSSFDEKKIVYSYIGQDSNVMTFGESTGLTFDYGTVIISSVSSMTSEQRWVTALSRFKKNICLVNLTNVLWSQLALDYRGKVLHKFLTGTASVTDLSAFLPGEPKFTHSYDLNVGKDEGVKEEKLAGDPWLKGMIFLGQAEDCEEIQEIATEVKEQWFKTHLPQADLEGVRATWVHKIMAKEMREVRLGYLVSDQFTDEHSKQLGKQLTNAAERFETIYPRHRANDTVTFIMAVKKRLRFSNPAKEMGKLGQAKLYGKFLLDEFLKKIPLKRQHDKVMMDAARQAFEDKKTSKSAATIENHSNRSCRDWLIDIGLIFSKSQ  5110

Range 2: 3713 to 4093 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 60/127(47%) 0/127(0%) Plus/Plus
Query       23  KSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIF  403
                K  +E W V TFE FL+     K+G  +IFDE+QL+PPGY+DL   ++ +D  I +AGDPCQS YDS+KDR  LG  ++D  RLL G SY + ++S+RF+NP F  RLPC+F     T    +Y ++
Subject   3713  KLGQEHWTVSTFEKFLQNAELTKSGCVLIFDEIQLYPPGYLDLVSYLVPADVRIVVAGDPCQSDYDSEKDRLFLGMIEADFKRLLTGASYNFVIQSKRFINPNFIDRLPCSFGNLGGTKDKEEYLMY  4093

Range 3: 4615 to 5097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 78/161(48%) 0/161(0%) Minus/Minus
Query      928  KIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1410
                KIR  S +QS Q+  E*FSIVAALLL F SSN+  A+SI       F+G F +  SSKNFP   A  +F  S  GFENL  F TA+  VT SL  CLG ++SNLS A ++C      CSS N      P+LTS  S   I  TH+AL  S+   G  VLNH
Subject   4615  KIRPISISQSRQERFE*FSIVAALLLVFLSSNACRAASIITLSCCRFNGIFFKNSSSKNFP*SLAWPSFPISFAGFENLNLFFTAIMNVTVSLARCLG*IVSNLSAAFVSCLPSCFECSSVN*SDTKYPNLTSLISLAMILWTHVALTPSRSACGKCVLNH  5097

Range 4: 3724 to 3972 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 36/83(43%) 0/83(0%) Minus/Minus
Query       34  PSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPS  282
                P SNL  S    P+   SF ES  L*QGSPA  ++ S       RS *PGG +* SSK++  P      F +  SKV T Q S
Subject   3724  PVSNLLKSASIIPRNNRSFSES*SL*QGSPATTIRTSAGTRYETRSR*PGGYN*ISSKMSTQPDLVNSAFCKNFSKVLTVQCS  3972

Range 5: 4132 to 4347 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 25/72(35%) 0/72(0%) Minus/Minus
Query      445  VMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASK  660
                V  T+   +L  ++AV H  S V + +  +   P    +PV SP V      P *++TIFFSS  +T +AS+
Subject   4132  VKLTKQIFFLNLERAVTHLCSDVIELTLLMITVP*SNVSPVLSPNVITLLSWPM*EYTIFFSSNDDTSIASR  4347

Range 6: 4438 to 4548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 19/37(51%) 0/37(0%) Minus/Minus
Query      751  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKS  861
                I  S GSP SFSS TPS  P         LGSPG K+
Subject   4438  IPLSHGSPASFSSFTPSSLPTFKSYECVNLGSPGKKA  4548

Range 7: 4610 to 5110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 55/167(33%) 0/167(0%) Minus/Minus
Query      923  LRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFL  1423
                L   E+  +I +PIP R+  MIF    TF     LK   S  H   I+  +QWN   E +K*K  I L    F  F  R+*+ + F   H +   II+ + W+ + KS  CI QL A    +F+ EL+   I  S  + FL     +P  P   ++  W + F+P L
Subject   4610  LAFGEDQTDINKPIPARTVRMIFNSCSTFTSLFILKCLPSRIHHNLIMLPLQWNFL*EFIK*KFSIKLSLA*FPHFLCRI*ESQPFFYSHNECDSIISSVPWVNSLKSLGCICQLFAKLL*MFISELIRY*IPQSDLSHFLSHDFVDPRRPHTLEIRLW*VCFKPLL  5110

Range 8: 3785 to 3967 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 22/61(36%) 0/61(0%) Minus/Minus
Query       95  EQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMT  277
                +QP  ++    +  SIF R+I  LT IT   + ++  +    *I +TRR  LNFI+D   T
Subject   3785  QQPFEISFNHTKE*SIFFRVIITLTGITCNNNTNIRRDEV*D*IQITRRVQLNFIEDEYAT  3967

American hop latent virus, complete genome

Sequence ID: Length: 8601 Number of Matches: 8

Range 1: 4177 to 5151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
411.2 bits(891) 0.0 179/325(55%) 0/325(0%) Plus/Plus
Query      449  DAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ  1423
                D ILVSSF+EKKIV+SY    +  LTFGESTG NF+ G IL++  S +T ++RW+TALSRFS N+  VN T    E  L  + GK L  FL  +S E     +LPG+P F  GF+ ++G++EG+ EEKL GDPWLK M+ L Q +D E   ++ E   +EWFKTH+P   LES RARWV K+  KEHRE R G   ++QF +EH   +  +L+NACERFE+IYPRH+ ND+VTFLMAV+KRL+FS P  E AK+  A  YG+FLL  FL KVPL   HN  LM +A  +FE KK +KSAATIENH+GRSCRDWL D+ L+F KSQ
Subject   4177  DVILVSSFDEKKIVESYTPDAKQILTFGESTGRNFRCGCILVTEASKYTSEKRWITALSRFSRNVAFVNATSTSFEQLLLVYKGKVLADFLCKRSTEEFFTQILPGKPVFRKGFSNAVGKDEGIMEEKLQGDPWLKTMIDLLQIEDIEETLIDQEEMQKEWFKTHLPQCELESVRARWVHKILAKEHREKRIGCMISEQFTEEHSKEQGVRLTNACERFETIYPRHRANDTVTFLMAVKKRLRFSDPNKERAKMHEAGNYGRFLLKEFLKKVPLRQKHNKELMAQAKADFEAKKTAKSAATIENHAGRSCRDWLADIGLVFSKSQ  5151

Range 2: 3769 to 4086 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.2 bits(291) 0.0 54/106(51%) 0/106(0%) Plus/Plus
Query       35  EGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPC  352
                + W V TFE F+  +  + +G  VI DE+QL+PPGY+D+CL ++  D  I L GDPCQS YDS+KDRA    E SDI  +L+ + YRYN+ SRRF N     RLPC
Subject   3769  QNWRVNTFEKFIAVIKSIGSGAAVIIDEIQLYPPGYLDICLALLERDVHIFLVGDPCQSDYDSEKDRASYAFELSDIEMVLKEREYRYNIMSRRFQNANLVGRLPC  4086

Range 3: 4656 to 5147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 74/164(45%) 0/164(0%) Minus/Minus
Query      928  DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1419
                D +K    S++QSLQ+ P *FS+VAALL  FF+S S  A ++   L     GTF +   ++N P   A    A S  G ENL  F TA+RKVT SL LC G ++S  S A +N +    LCSS NC  +  P L SRCS  +I  THLA  DS    G  VLNH
Subject   4656  DLLKTSPISASQSLQERPA*FSMVAALLAVFFASKSALACAMSSLLCF*RRGTFFKNSFNRNLP*LPASCILARSLFGSENLNLFFTAIRKVTVSLALCRG*IVSKRSQAFVNLTPCSLLCSSVNCSDIMQPILFSRCSLASILCTHLARTDSNSHCGR*VLNH  5147

Range 4: 4245 to 4589 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 47/115(41%) 0/115(0%) Minus/Minus
Query      517  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSV  861
                I F+QGSP +FSS+ PS  P   LKP +K G PG   +   S L   +K  S  P   ++  S    V  T++ L  KR+ AV H  S V  E+   R+ P  KF PVDSPKV +
Subject   4245  IVFNQGSPCNFSSIMPSSLPTALLKPFRKTGLPGRICVKNSSVLLLQRKSASTLPL*TNKSCSNEVLVALTKATLREKRESAVIHLFSLVYFEASVTRMQPQRKFLPVDSPKVKI  4589

Range 5: 3774 to 4082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 40/103(39%) 0/103(0%) Minus/Minus
Query       40  GNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ  348
                GN  +   F   RL  LYLY    S +++SL S    ALSF  S  L  GSP R M  S   + +  S *PGG S  SS +T  P    +      SKV T Q
Subject   3774  GNRPTKFAFWKRRLIMLYLYSRSLSTISISLNSKAYEALSFSLS*SLWHGSPTRNMCTSRSSSAKQISR*PGG*SCISSMMTAAPEPMLLITAMNFSKVFTLQ  4082

Range 6: 4173 to 4217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 9/15(60%) 0/15(0%) Minus/Minus
Query      445  TIFFSSKLETRMASK  489
                TIFFSS  ET + S+
Subject   4173  TIFFSSNEETSITSR  4217

Range 7: 4489 to 4890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 38/134(28%) 0/134(0%) Minus/Minus
Query      761  NGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTG  1162
                + H +GH +I  + W+ +FK+ T I Q  A    V + +LLG         +    +  +PP    F  T W + FEPF +    +    F I+ L +  H   P IT Q L  +  I  +   ET  + G  G
Subject   4489  HSH*EGHGVIGPVPWVNSFKTLTSIRQSNALFFAVLLCKLLGYHAAYPLLAMLFGEYFVHPPRAYRF*FTLWQVSFEPFFLHLLLINQGFFNILNLQQVYHRFQPGITLQFLFHNALIFADGVTETFSKNGFAG  4890

Range 8: 5008 to 5139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 19/44(43%) 0/44(0%) Minus/Minus
Query     1280  EN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIV  1411
                +N  +I +P+PTR++ MIFY  CTF+CFL  K     +H++ +V
Subject   5008  KNESDIGKPVPTRASSMIFYGGCTFSCFLCFKICFGLRHELLVV  5139

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 9

Range 1: 4726 to 5217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.3 bits(540) 0.0 103/164(63%) 0/164(0%) Plus/Plus
Query      932  FKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ  1423
                F+TH+P   +ES RARWV K+  KEHRE R G   ++QF DEH     E L+NACERFE+IYPRH+ ND+VTFLMAV+KRLKFS P  E AKL  A PYG FLL  FL +VPL   H+  LM  A  +FEEKK +KS+ATIENHSGRSCRDWL D+ LIF KSQ
Subject   4726  FRTHLPRCEMESVRARWVHKILAKEHREKRVGNLVSEQFTDEHSRNDGEHLTNACERFETIYPRHRANDTVTFLMAVKKRLKFSTPCKEKAKLHEATPYGPFLLKEFLKRVPLKPQHDRELMARAKSDFEEKKTAKSSATIENHSGRSCRDWLADIGLIFSKSQ  5217

Range 2: 4252 to 4680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.2 bits(387) 0.0 81/143(57%) 0/143(0%) Plus/Plus
Query      458  LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDD  886
                LVSSFEEKKIV SYFG + L LTFGESTG NFK+G ILI+  S H+ +RRW+TAL+RFSHNL LVN T  + E     +  + L +FLT  S  + I+ LLPG P    GF   IGR+EGV+E K+ GDPWLK M+ L Q +D
Subject   4252  LVSSFEEKKIVDSYFGPETLCLTFGESTGRNFKYGCILITDVSRHSSERRWITALTRFSHNLCLVNATCTQFEMLNLQYKNRALNYFLTGTSTPDFIKTLLPGTPKSRLGFGEKIGRDEGVKEAKMVGDPWLKTMIDLLQLED  4680

Range 3: 3823 to 4173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 57/117(49%) 0/117(0%) Plus/Plus
Query       23  KSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSM  373
                K++ + W V TFE FL +   ++ G  VI DEVQL+PPGY+DL L ++     I L GDPCQS YDS+KDR     E SDI ++LE K Y YN+ SRRFVN  ++ RLPC   +  +
Subject   3823  KAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPCTLDESKL  4173

Range 4: 4725 to 5213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.7 bits(329) 0.0 84/163(52%) 0/163(0%) Minus/Minus
Query      931  DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  1419
                D +KI   S++QS QDLP  FSIVA LL  FFSS S  A ++       FSGT  R   SK  PYG A  N A S  G EN   FLTA+RKVT SL LCLG ++SN SHA + CS    LCSS NC     P L S CSF +I  THLAL DS    G  V N
Subject   4725  DLLKISPMSASQSRQDLPLWFSIVAELLAVFFSSKSDFALAMSSLSCWGFSGTRFRNSFSKKGPYGVASCNLAFSLQGVENFSLFLTAIRKVTVSLALCLG*IVSNRSHAFVKCSPSLRLCSSVNCSDTRLPTLFSLCSFASILCTHLALTDSISHRGKCVRN  5213

Range 5: 4254 to 4454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 37/67(55%) 0/67(0%) Minus/Minus
Query      460  VMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLET  660
                V FTR +LW KR KAV H RS    ++  I++ P LKF PVDSPKV      PK*  TIFFSS  ET
Subject   4254  VAFTRHKLWEKRVKAVIHLRSLECLDTSVIKMHPYLKFLPVDSPKVKHKVSGPK*LSTIFFSSNEET  4454

Range 6: 3840 to 4157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 44/106(42%) 0/106(0%) Minus/Minus
Query       40  KLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ  357
                ++ G   S + FT  RL  L LY   SS L +SL S  K+ LSF  S  L  GSP+++M        R RS  PGG S TSS IT  P    +   R  SKV T Q
Subject   3840  RVHGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ  4157

Range 7: 4506 to 4655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 23/50(46%) 0/50(0%) Minus/Minus
Query      712  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK*  861
                I F+QGSP  F+SLTPS  P+ + KP +  G PGS  L+       V+K*
Subject   4506  IVFNQGSPTIFASLTPSSLPIFSPKPRRDFGVPGSSVLMKSGVEVPVRK*  4655

Range 8: 4765 to 5217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 49/151(32%) 0/151(0%) Minus/Minus
Query      971  LRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGP  1423
                L L ++  N+ QPI TRS  ++F C   F  FL L+      H+  I+  + W+   E  + K PIW C  QF     R  +F+ F + H +   +I  +S I   +   C+ Q+L   T +F+ ELLG  +  S   + L+++L +PPGP
Subject   4765  LGLAKDQSNVCQPITTRSATVVFDCGGAFGGFLLLEV*LCPGHEFPIMLGL*WHPF*EFFQQKGPIWRCFMQFGLLFTRRGEFQPFLDRH*ESDGVIGPVSGIDCLEPLACVRQMLPIITAMFISELLGYEVANSLLPMLLRQYLVHPPGP  5217

Range 9: 4264 to 4458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 21/65(32%) 0/65(0%) Minus/Minus
Query      470  TGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFK  664
                T  V+  ++V +T  S  PP    +   +  ++ S+ EV    FTES+ + L +KV +   LFFK
Subject   4264  TRGVYEAQVVGETSQSRYPPPFAGMPRYICDQDASIFEVSAR*FTESQTQGLWAKVTIYYLLFFK  4458

Nucleotide Sequence (327 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
327

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
241.6 792.8 48% 1.93e-63 50% NC_001948
124.3 192.3 26% 3.888e-28 49% NC_008020
122.0 176.7 32% 1.903e-27 55% NC_013527
116.5 228.2 28% 8.602e-26 40% NC_029087
118.8 177.2 31% 1.758e-26 60% NC_001361

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 6323 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
241.6 bits(521) 0.0 99/108(92%) 0/108(0%) Minus/Plus
Query        2  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP  325
                LIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FP
Subject   6323  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFP  6646

Range 2: 6322 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.4 bits(372) 0.0 84/108(78%) 0/108(0%) Plus/Minus
Query        3  GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                GNLSTL TPTNSN D ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS  A*+TSIA*LS+QFSRLPIS AM I SQ++
Subject   6322  GNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN  6645

Range 3: 6325 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 54/107(50%) 0/107(0%) Minus/Plus
Query        3  HLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS  323
                +LG ++HC  +G PGEL+* LC+ G+LC+  GR  +*ND+   S   L LC +   + A DE+LNF  +*SY LGLK LA  +YYE* S*S V +*VC C   A IS
Subject   6325  NLGADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*IS  6645

Range 4: 6464 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 35/61(57%) 0/61(0%) Plus/Minus
Query        2  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVV  184
                WK +H  NT+KLK  Q FN*+IHN   MPNT*GLI SFK   N*A HL+L+ + E +TI++
Subject   6464  WKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM  6646

Range 5: 6326 to 6421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 16/32(50%) 0/32(0%) Plus/Minus
Query      227  AQPVGIGYLNCIVINAVLQVTHFTSNANSLPN  322
                +Q V IG L  I++N +LQV H  SNA  LP+
Subject   6326  SQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD  6421

Range 6: 6327 to 6647 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 54/107(50%) 0/107(0%) Plus/Minus
Query        1  LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK  321
                LEI*A  KH QTQ  T L*L+YS* S++AK+LRPN *LQ   KLS SS A  *    HN +   L   SSFQ +  P   HR P  H+ Q +SPG P   QC  +P+
Subject   6327  LEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPR  6647

Range 7: 6330 to 6572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 41/81(51%) 0/81(0%) Minus/Plus
Query       76  GREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  318
                G  +ALL +W TWR  L  M+ R PM T W S  LK** ++K +   IV  S    S R* AQF   LKL IRP*VFG++*
Subject   6330  GSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*  6572

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 2

Range 1: 5865 to 6116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 52/84(62%) 0/84(0%) Minus/Plus
Query       74  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI  325
                L+ ER+CIA+E  NL NCIDNYAIEVSYAY+LGEL++  MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ +   GV+
Subject   5865  LVLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM  6116

Range 2: 5864 to 6115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 41/84(49%) 0/84(0%) Plus/Minus
Query       75  ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                ITP +  +   I+ N  EIE    CLF T   TQL  AS SSSFI    NSPSL A*+TS+A*LS+Q  +L +S A+   S  S
Subject   5864  ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAIHRRSSTS  6115

Butterbur mosaic virus, complete genome

Sequence ID: Length: 8662 Number of Matches: 2

Range 1: 5834 to 6058 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 44/75(59%) 0/75(0%) Minus/Plus
Query      101  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*  325
                L++ER+CIA+E GNL+NCIDNYAIEVSYAYRLGE +++ M+EEE  +++NCVR +++NKH M+ ++  LF A++*
Subject   5834  LVFERLCIAKETGNLKNCIDNYAIEVSYAYRLGERALQRMDEEETRSYFNCVRVIIKNKHHMKSNVRDLFTALE*  6058

Range 2: 5833 to 6012 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 33/60(55%) 0/60(0%) Plus/Minus
Query      147  CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                CLFL    TQL     SSS I     SP+L A*+TSIA*LSMQF + P+S AMQ  S+ S
Subject   5833  CLFLIMTLTQLK*LRVSSSSIRWRALSPNLYA*ETSIA*LSMQFFKFPVSLAMQRRSKTS  6012

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 3

Range 1: 5857 to 6078 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 44/74(59%) 0/74(0%) Minus/Plus
Query      104  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID  325
                L++ER+CIA+E  NL NCIDNYAIEV YAYR+GE + E M+EEE+EA+YNCVR +V+N+H +  +I+ LF   D
Subject   5857  LVYERMCIAKETNNLHNCIDNYAIEVGYAYRMGERAKERMDEEELEAYYNCVRVIVKNRHLLLSNIAALFHQTD  6078

Range 2: 5856 to 6035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 37/60(62%) 0/60(0%) Plus/Minus
Query      147  CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                CLFLT   TQL* AS+SSS + S   SP L*A* TSIA*LS+Q  +L +S AM ILS  S
Subject   5856  CLFLTITLTQL**ASSSSSSMRSFARSPIL*A*PTSIA*LSIQLCKLLVSFAMHILSYTS  6035

Range 3: 5867 to 6046 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 24/60(40%) 0/60(0%) Plus/Minus
Query      136  TSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFS  315
                T + AYF*    HNC+ L  P H    L  RP C+H   Q H+YQ +   Y     C FS
Subject   5867  TVASAYF*QSL*HNCNKLPAPPHPCVLLPARPFCKHNPLQ*HNYQYNCANYWSLLLCTFS  6046

Potato virus M, complete genome

Sequence ID: Length: 8533 Number of Matches: 2

Range 1: 5759 to 5977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 45/73(62%) 0/73(0%) Minus/Plus
Query      107  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI  325
                L+ ER+CIA+EM NL NCIDNYAIEV+YAY+LGE ++  M+EEEV A YNCVR +VRNKH +R  +  +FE +
Subject   5759  LVLERMCIAKEMNNLSNCIDNYAIEVAYAYKLGEKAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDVKQVFEVL  5977

Range 2: 5758 to 5937 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 36/60(60%) 0/60(0%) Plus/Minus
Query      147  CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                CLF T   TQL* A+TSSS I+    SP+L A  TS+A*LSMQ  RL IS AM ILS  S
Subject   5758  CLFRTMILTQL*NAATSSSSILFTAFSPNLYAYATSMA*LSMQLLRLFISFAMHILSSTS  5937

Nucleotide Sequence (248 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
25
50
75
100
125
150
175
200
225
248

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
157.3 444.0 29% 2.688e-38 40% NC_001948
43.2 43.2 28% 0.0005958 29% NC_018714
42.8 42.8 24% 0.0008186 34% NC_003462

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 3338 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 66/82(80%) 0/82(0%) Minus/Plus
Query        3  LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  248
                LALKAGIRSFVESE  V   LS+P I KQL ENAYAENEMIALFC+RHH R I+ITPEYE SWKFGE E PLCGILCLKSNH
Subject   3338  LALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNH  3583

Range 2: 3340 to 3585 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 53/82(65%) 0/82(0%) Plus/Minus
Query        1  K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA  246
                K*FD + +IPHRG S SPNFQL+SYSGV+ I L+WC  QN AIISFSA*AFS +C  + G ER+  T  SLST D IPAF+A
Subject   3340  K*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRA  3585

Range 3: 3362 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 33/74(45%) 0/74(0%) Plus/Minus
Query        3  MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHER  224
                +I* + +NST* PL FP+ P   IFWC   +  +VPNAE* +H I  ISI  +L    W  K       T HER
Subject   3362  VI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHER  3583

Range 4: 3346 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 33/79(42%) 0/79(0%) Minus/Plus
Query        4  EGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKS  240
                +GR  + RG+*      SF P++     R+CLCR+*+D +IL  AP +    +TRI*  LE+ G+* A MWN +  +KS
Subject   3346  KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKS  3582

Range 5: 3348 to 3482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 18/45(40%) 0/45(0%) Plus/Minus
Query      104  GA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLP  238
                GA  RI +S H  HKH L +    LG K+L+    H PR   + P
Subject   3348  GAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRP  3482

Range 6: 3504 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 13/27(48%) 0/27(0%) Plus/Minus
Query        2  NDLTSNTKFHIEASHFPQTSSSPHILV  82
                +DL    +FHI A+H P+ S+  HILV
Subject   3504  SDLI*GKEFHIGATHLPRISN*LHILV  3584

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 3430 to 3636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 20/69(29%) 0/69(0%) Minus/Plus
Query        3  ESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  209
                +  +   +  P + KQL  N +AE E +A FC  +  RL ++    E +W F  +E      L  + NH
Subject   3430  DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNH  3636

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 1

Range 1: 3459 to 3635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 20/59(34%) 0/59(0%) Minus/Plus
Query        3  PTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  179
                P + KQL  N +AE E +A FC  +  RL ++    E +W F  +E      L  + NH
Subject   3459  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNH  3635

Nucleotide Sequence (399 letters)

Query ID:ds2015-149_56
Query definition:No definition line
Query length:106
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
40
80
120
160
200
240
280
320
360
399

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
239.3 870.0 41% 1.295e-62 45% NC_001948
199.5 406.9 26% 1.28e-50 34% NC_012038
194.0 386.3 25% 5.788e-49 32% NC_029089
194.4 403.8 23% 4.213e-49 37% NC_029087
194.4 517.2 25% 4.263e-49 39% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 5960 to 6325 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.3 bits(516) 0.0 100/122(82%) 0/122(0%) Minus/Plus
Query        2  LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  367
                L   +F+G+   L        +HLGSKLGSF+IMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCAN RLRLKTEHEGFLNMICLKAKVQFV+NPTFCGW LFKEGIFKKPQL
Subject   5960  LQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQL  6325

Range 2: 6028 to 6318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 78/97(80%) 0/97(0%) Plus/Minus
Query        9  GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                GFLKIPSLNK HPQNVG  TN TLALRQI+FR PSCSVLS NL LAHMSSPA AIDS+PVSSYL+KVNN+ AIVLN+ VLASPVNLII  DPS DP+
Subject   6028  GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLRLAHMSSPANAIDSEPVSSYLRKVNNMLAIVLNRNVLASPVNLIIENDPSFDPK  6318

Range 3: 6023 to 6322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 47/100(47%) 0/100(0%) Plus/Minus
Query        5  LGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN  304
                L  L+D F K TPS +CG+ +KL+L  KANH+ +  M   KP  ++S HVI  K  *L  C FVP + EQH+ H V+QK  G   K HY + S+L S+MN
Subject   6023  LRLLEDPFLK*TPSAECGIGNKLNLGLKANHVQKTLMLCFKPQPSISTHVITCKCY*LRAC*FVPQKGEQHVSHSVKQKCAGLPSKPHYRE*SEL*SQMN  6322

Range 4: 6034 to 6315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 43/94(46%) 0/94(0%) Minus/Plus
Query       12  IQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*E  293
                I+A I  YNE+Y   Q++ V H G +VVH  +VRT+R+ VN  C  *HV * ++ A*+  *   ++DLP*  G++C + HIL M F+* R+L E
Subject   6034  IKARIILYNEVYWGGQHISV*HYG*HVVHLSEVRTNRL*VNSICR**HVC*SKVAA*NRA*GFSEHDLP*GQGSVCFQSHILRMVFI*GRDLQE  6315

Range 5: 6075 to 6323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 41/83(49%) 0/83(0%) Minus/Plus
Query        4  KPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPN  252
                +P  FC T W  CCS  *GTN*Q  SQ  L+ MTC L    GL+ +M+  * *FAL+ R +L   PH  DGV L+K S R+ N
Subject   6075  RPAHFCLTLWLTCCSPF*GTN*QALSQ*HLQVMTCVLIEGCGLKQSMRVF*T*FALRPRFSLFPIPHSADGVYLRKGSSRSLN  6323

Range 6: 6024 to 6323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 45/100(45%) 0/100(0%) Plus/Minus
Query        4  VGVS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE  303
                +  S*R L * N+I +MW   Q  P  *GKS     H   *A    * TCH  Q  LT++L VRT  +*TT  P C*T+  W   * SL*+ I+A I +E
Subject   6024  IEAS*RSLP*INTIRRMWDWKQTEPWP*GKSCSENPHALF*AATFD*HTCHHLQMLLTQSLLVRTSER*TTC*P*C*TEMCWPPQ*TSL*RMIRALIPNE  6323

Range 7: 6575 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 26/30(87%) 0/30(0%) Minus/Plus
Query      302  IMNNLVKALSTFEFVGVYSVLRFPVVVHSV  391
                IMNNLVKALS FEFVGV+SVL+FPVV+HSV
Subject   6575  IMNNLVKALSAFEFVGVFSVLKFPVVIHSV  6664

Range 8: 6575 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 19/30(63%) 0/30(0%) Plus/Minus
Query      302  NTMNDNWKSEHAINTHKLKRRQSFN*VIHN  391
                +TMND WK +H  NT+KLK  Q FN*+IHN
Subject   6575  HTMNDYWKFKHTENTYKLKC*QCFN*IIHN  6664

Helleborus net necrosis virus, complete genome

Sequence ID: Length: 8542 Number of Matches: 3

Range 1: 5339 to 5704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.5 bits(429) 0.0 84/122(69%) 0/122(0%) Minus/Plus
Query        2  LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  367
                L+  E++G+   L         HLGSKLGSFAIMRF+GEASTFLFNTMANMLFTFLRYELTG E I+FAGDDMCA+ RLR+  EHE FL  + LKAKV F TNPTFCGW L  +GIFKKPQL
Subject   5339  LACMEYLGLPKDLIADYCYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYELTGKEFISFAGDDMCASKRLRVSVEHESFLGKLKLKAKVNFTTNPTFCGWCLTTDGIFKKPQL  5704

Range 2: 5407 to 5703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 62/99(63%) 0/99(0%) Plus/Minus
Query        3  SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                SWGFLKIPS+ + HPQ VG V   T A      R  SCS L+LNLL AHMSSPAK ++S PV+SY +KVNN+FA+VL +KVLASP   IIAKDP+L+PR
Subject   5407  SWGFLKIPSVVRHHPQKVGLVVKLTFAFNFSFPRKLSCSTLTLNLLEAHMSSPAKLMNSFPVNSYRRKVNNMFAMVLKRKVLASPEKRIIAKDPNLEPR  5703

Range 3: 5405 to 5701 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 34/99(34%) 0/99(0%) Plus/Minus
Query        5  LGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKM  301
                LGF KD    +TP  K  V  ++   F+    *+  M +  P     AHVI  ++N L P Q VP ESE H+ H +E+K     R++H  +R + G+++
Subject   5405  LGFFKDPIGCKTPPAKSWVGSEVDFCFQF*FP*KALMLNAYPQPLRGAHVIPSETNELFPSQLVPQESE*HVCHGIEKKSASLPREAHNCERPQFGTQV  5701

Elderberry carlavirus E isolate EBCVE, complete genome

Sequence ID: Length: 8540 Number of Matches: 3

Range 1: 5357 to 5722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.0 bits(417) 0.0 83/122(68%) 0/122(0%) Minus/Plus
Query        2  LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  367
                +S   ++G+ + L    V    HLGSKLG+FAIMRF+GEASTFLFNTMANMLFTFLRYEL GSE I FAGDDMCANSRL +K EHEGFL  + LKAKV   T PTFCGW L  +GI+KKPQL
Subject   5357  VSLMRYLGLPADLINDYVYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYELKGSERICFAGDDMCANSRLVVKKEHEGFLAKLKLKAKVMVTTKPTFCGWHLCADGIYKKPQL  5722

Range 2: 5425 to 5721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 59/99(60%) 0/99(0%) Plus/Minus
Query        3  SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                SWGFL IPS  +  PQ VG V   TLA      R PSCS  +     AH+SSPAK I SDP+SSYLK V ++ AIVLN+KVLASP NLIIAK PS +PR
Subject   5425  SWGFLYIPSAQRCQPQKVGLVVTMTLAFNFNFARKPSCSFFTTKREFAHISSPAKHILSDPLSSYLKNVKSMLAIVLNRKVLASPENLIIAKFPSFEPR  5721

Range 3: 5423 to 5722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 32/100(32%) 0/100(0%) Plus/Minus
Query        2  ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKM  301
                +LGF       + P+ +  +     LSF     *+  +  L  *+ V AH+I  ++  LGP + +P E ++H+ H VE +G   +R+SHYSK S+  ++M
Subject   5423  KLGFFVYPVCAKVPTAESRLGRDHDLSF*FQFC*KALVLLLHH*TRVRAHIITSEAYPLGPFKLIPQECKEHVSHSVE*EGASLSRESHYSKVSQF*TQM  5722

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 4

Range 1: 5560 to 5859 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.4 bits(418) 0.0 79/100(79%) 0/100(0%) Minus/Plus
Query        2  HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  301
                HLGSKLG+FAIMRF+GEASTFLFNTMANMLFTFLRYEL GSE I FAGDDMCAN+RL+LK EH GFL  + LKAKVQF   PTFCGW L  +GI+KKPQL
Subject   5560  HLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYELKGSERICFAGDDMCANTRLKLKHEHAGFLGKLKLKAKVQFTDKPTFCGWHLCSDGIYKKPQL  5859

Range 2: 5562 to 5858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 61/99(62%) 0/99(0%) Plus/Minus
Query        3  SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                SWGFL IPSL+K HPQ VG   N TLA    + +NP+CS  +   +LAHMSSPAK + S P+SSYLKKVN+I AIVL +KVLASP NL+IAK P+L+P+
Subject   5562  SWGFL*IPSLHKCHPQKVGLSVNWTLAFNFNLPKNPACSCFNFKRVLAHMSSPAKHMRSLPLSSYLKKVNSILAIVLKRKVLASPENLMIAKFPNLEPK  5858

Range 3: 5593 to 5730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/46(37%) 0/46(0%) Plus/Minus
Query      131  *SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSH  268
                *+++S HV+  ++  L   + +P E E HI HC+++K    TR+SH
Subject   5593  *ASISTHVVPCEAYALTSLKLIPQEGE*HISHCIKKKSARLTRESH  5730

Range 4: 5776 to 5859 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 11/28(39%) 0/28(0%) Plus/Minus
Query        2  ELGFLKDSFFKQTPSTKCGVCDKLHLSF  85
                +LGFL ++   Q P  + G+  +L LSF
Subject   5776  QLGFLVNTITTQVPPAESGLVCELDLSF  5859

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 5

Range 1: 5558 to 5857 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.4 bits(418) 0.0 77/100(77%) 0/100(0%) Minus/Plus
Query        2  HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  301
                HLGSKLG+F+IMRFTGEASTFLFNTMANMLFTFLRYEL GSE+I FAGDDMC+N RLR+  +HEGFL+ + LKAKVQF   PTFCGW+L  +GIFK+PQL
Subject   5558  HLGSKLGNFSIMRFTGEASTFLFNTMANMLFTFLRYELNGSEAICFAGDDMCSNRRLRVSNKHEGFLSKLRLKAKVQFTVKPTFCGWNLCLDGIFKRPQL  5857

Range 2: 5560 to 5856 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 65/99(66%) 0/99(0%) Plus/Minus
Query        3  SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                SWG LKIPS ++ HPQNVG   N TLA    + RNPSC   +L+L   H+SSPAK + S+P+SSYLKKVNN+FAIVLNKKVLASPVNL+I K PSL+PR
Subject   5560  SWGRLKIPSRHRFHPQNVGLTVNWTLAFNLSLLRNPSCLFDTLSLRFEHISSPAKHMASEPLSSYLKKVNNMFAIVLNKKVLASPVNLMIEKFPSLEPR  5856

Range 3: 5563 to 5682 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 19/40(48%) 0/40(0%) Minus/Plus
Query      177  WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVR  296
                W  AW F  +EI+ * ++  VQH+G++VVHFL++RT   R
Subject   5563  WF*AWEFFNHEIHW*GKHFLVQHDGKHVVHFLEIRTQWFR  5682

Range 4: 5703 to 5855 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 22/51(43%) 0/51(0%) Minus/Plus
Query        4  MTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPN  156
                M CA T D*G ++NM+G *     + + NL  + HFVDG+C   E    PN
Subject   5703  MICARTGD*GCQINMRGF*ANLG*RPKSNLQLSQHFVDGICALMEFSNAPN  5855

Range 5: 5558 to 5857 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 39/100(39%) 0/100(0%) Plus/Minus
Query        2  ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKM  301
                +LG  ++S   Q PSTKC +  KL    +     +P MF   P S V AH+I  ++  L   +FV  ESEQH+ H VEQ+    T +SH  K  KL +K+
Subject   5558  KLGAFENSIKAQIPSTKCWLNCKLDFGLQPKFAQKPLMFI*HPQSPVRAHIITSEAYGL*TIEFVSQESEQHVCHRVEQESACLTSESHD*KIPKLRTKV  5857