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Queries

Nucleotide Sequence (529 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
529

Descriptions

Alignments

Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997473.1 Length: 4619 Number of Matches: 2

Range 1: 4049 to 4546 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.6 bits(427) 0.0 84/166(51%) 0/166(0%) Minus/Plus
Query       12  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVLQWRDMSSPFHLS  509
                GM+L  +T LR  YY RQ+V+C  P+E FY IK THRVAGG+SEA D+DV   +  G      +++PKL GVH+YA  VA  L+MMK ++ + DR+  AT  AV PK+R M ++PN   +   ++KAIYKAFKGK+  AGYGKAALVG ALDV+Q  D  +   ++
Subject   4049  GMTLDTVTKLRHVYYNRQSVICNMPVEDFYRIKTTHRVAGGVSEAIDSDVSMSVIRGIDKSFNIKIPKLQGVHDYARAVAMELEMMKRLDYITDRMYKATYEAVVPKTRGMTVVPNKEEKWCYNVKAIYKAFKGKIQTAGYGKAALVGMALDVIQTSDKDTTLKMA  4546

Range 2: 4033 to 4512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 75/160(47%) 0/160(0%) Plus/Minus
Query       46  CNTSSANPTSAAFPYPATSTFPLKALYIALRCLDAWMLGFGMIFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLSLRLVIICRLIPQHNQT  525
                C TS A PT+AAFP PA   FPL ALYIAL     +   FG   + L  G TA  VA+  LS   S+ FI+S+  AT+ A SCTP +LG     L + P +    TS S AS+ PPATL V LI *K+S G+LQ T CL *Y  L  V +  +IP   Q+
Subject   4033  CITSRAIPTNAAFP*PAVCIFPLNALYIALTL*HHFSSLFGTTVMPLVLGTTASYVALYILSVI*SSLFIISSSIATARA*SCTPCNLGILMLKLLSMPLITDILTSESIASDTPPATLWVVLIL*KSSTGILQITDCLL*YTCLSFVTVSSVIPLLRQS  4512

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997472.1 Length: 4655 Number of Matches: 3

Range 1: 4051 to 4512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 71/154(46%) 0/154(0%) Minus/Plus
Query       48  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL  509
                GM+  II+ LR +YY RQ+V+C T +E  Y+IKN HRV GGISE  D+ +  LI      +  V +P L GV+EYA E+ K L +   ++ + DR+  AT  AV+ K RKM I+     Q   +++ IYKA KG      YGKAALVGFAL+VL
Subject   4051  GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL  4512

Range 2: 4083 to 4388 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 36/102(35%) 0/102(0%) Plus/Minus
Query      172  IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS  477
                IFI      TA  VA   LS        + N    S AYS TP   G  T        +I      S +S +PP TLC F I   +S  V  +T CL *Y S
Subject   4083  IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS  4388

Range 3: 4431 to 4511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/27(59%) 0/27(0%) Plus/Minus
Query       49  NTSSANPTSAAFPYPATSTFPLKALYI  129
                NTS+ANPT AA P    +  PL ALYI
Subject   4431  NTSNANPTKAALP*FCDN*LPLCALYI  4511

Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997474.2 Length: 3666 Number of Matches: 3

Range 1: 3088 to 3549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 71/154(46%) 0/154(0%) Minus/Plus
Query       48  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL  509
                GM+  II+ LR +YY RQ+V+C T +E  Y+IKN HRV GGISE  D+ +  LI      +  V +P L GV+EYA E+ K L +   ++ + DR+  AT  AV+ K RKM I+     Q   +++ IYKA KG      YGKAALVGFAL+VL
Subject   3088  GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL  3549

Range 2: 3120 to 3425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 36/102(35%) 0/102(0%) Plus/Minus
Query      172  IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS  477
                IFI      TA  VA   LS        + N    S AYS TP   G  T        +I      S +S +PP TLC F I   +S  V  +T CL *Y S
Subject   3120  IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS  3425

Range 3: 3468 to 3548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/27(59%) 0/27(0%) Plus/Minus
Query       49  NTSSANPTSAAFPYPATSTFPLKALYI  129
                NTS+ANPT AA P    +  PL ALYI
Subject   3468  NTSNANPTKAALP*FCDN*LPLCALYI  3548

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: NC_020903.1 Length: 4655 Number of Matches: 3

Range 1: 4051 to 4512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 71/154(46%) 0/154(0%) Minus/Plus
Query       48  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL  509
                GM+  II+ LR +YY RQ+V+C T +E  Y+IKN HRV GGISE  D+ +  LI      +  V +P L GV+EYA E+ K L +   ++ + DR+  AT  AV+ K RKM I+     Q   +++ IYKA KG      YGKAALVGFAL+VL
Subject   4051  GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL  4512

Range 2: 4083 to 4388 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 36/102(35%) 0/102(0%) Plus/Minus
Query      172  IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS  477
                IFI      TA  VA   LS        + N    S AYS TP   G  T        +I      S +S +PP TLC F I   +S  V  +T CL *Y S
Subject   4083  IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS  4388

Range 3: 4431 to 4511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/27(59%) 0/27(0%) Plus/Minus
Query       49  NTSSANPTSAAFPYPATSTFPLKALYI  129
                NTS+ANPT AA P    +  PL ALYI
Subject   4431  NTSNANPTKAALP*FCDN*LPLCALYI  4511

Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052

Sequence ID: LC075489.1 Length: 4455 Number of Matches: 8

Range 1: 4013 to 4453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
325.9 bits(705) 0.0 139/147(95%) 0/147(0%) Minus/Plus
Query       78  LCWGMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKA  518
                L  GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAG+LEVEVPKL GVHEYA+EVAKTLDMMKDVELLV RVRMATLSAVTPKSRKM+IIPNPN+QASKHLKAIYKAFKGKVDVAGYGKA
Subject   4013  LARGMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGKLEVEVPKLIGVHEYAVEVAKTLDMMKDVELLVSRVRMATLSAVTPKSRKMHIIPNPNVQASKHLKAIYKAFKGKVDVAGYGKA  4453

Range 2: 4006 to 4455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
255.8 bits(552) 0.0 122/150(81%) 0/150(0%) Plus/Minus
Query       76  AAFPYPATSTFPLKALYIALRCLDAWMLGFGMIFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLSLRLVIICRLIPQHNQT  525
                AAFPYPATST PLKALY+A +CLDA  LGFGM+ IFLD GVTAD VAILTL TS+STSFI+S+VFATS AYSCTP S GTSTSS PAGPGLISCSTSAS*AS+MPPATLCVFLIT* AS+GVLQTTACLA*Y SLR VIIC+LIP   Q+
Subject   4006  AAFPYPATSTLPLKALYMAFKCLDA*TLGFGMMCIFLDLGVTADRVAILTLLTSNSTSFIISSVFATSTAYSCTPISFGTSTSSFPAGPGLISCSTSAS*ASDMPPATLCVFLIT*NASIGVLQTTACLA*YRSLRFVIICKLIPLAKQS  4455

Range 3: 4013 to 4450 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.4 bits(383) 0.0 78/146(53%) 0/146(0%) Plus/Minus
Query       81  LSISCYIYLPFESFVYCFEMFRRLDVRIRYDIHFP*FWSNC**RCHSHPIYE*FHIFHHV*CFRDLDRILVHSCQLRHLYF*PPCGSWFD*LFYISVVSFRNAPGHPVCVFNHVKSLNGRFTNHRLSRIISKPQVSYYL*THSPTQ  518
                LSI  Y++  F+SFVY F + RRL++RI YD+H P*F   C *  HS+P  + F++FHH+ CF   +RI ++   L + YF  P G W D*LF+ISVVSFR APGHPVCVFNHVK L+   TNH L RII + +V YYL  H   Q
Subject   4013  LSIPSYVHFAFKSFVYGF*VLRRLNIRIWYDVHLP*FRRYCR*SRHSNPTDQQFNVFHHIQCFCHFNRIFMYPY*LWYFYFQLPRGPWLD*LFHISVVSFRYAPGHPVCVFNHVKRLDRCLTNHCLPRIIPQSEVCYYLQAHPSRQ  4450

Range 4: 4035 to 4454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 72/140(51%) 0/140(0%) Minus/Plus
Query       77  K**LT*GLDIMRDRRWFVKRPLRLFT*LKTHTGWPGAFRKLTTLM*NN*SNQDPQGG*K*RCLSWQECTSMRSRSRKH*T**KMWNYS*IG*EWQRYQQLLQNQGK*ISYRILTSKRLNISKQYTKLSKGR*M*QDMERQ  496
                K** T    IMR ++WFV+   R FT*LKTHTGWPGA+ KLTTLM NN*S+Q P+G  K*+  S     +MR + +KH  **K  N   +G EW+ Y+Q   NQG+  SY+IL  +RL+  K YTKL K +  *  MER+
Subject   4035  K**QTSDCGIMRGKQWFVRHLSRRFT*LKTHTGWPGAYLKLTTLMWNN*SSQGPRGSWK*KYQS**GYMNMRLKWQKHWI**KTLNCWSVGLEWRLYRQ*RLNQGRCTSYQILMFRRLST*KPYTKLLKAKWT*LGMERR  4454

Range 5: 4243 to 4452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 30/70(43%) 0/70(0%) Minus/Plus
Query       79  VCDRGRENIRHDERCGTTRR*GENGNAISSYSKIKENEYHTES*HPSV*TSQSNIQSFQREGRCSRIWKG  288
                +C    +N  +DER     +*G NG++I S + IKE+ +HT+S*   V*  +S+IQSF R+   S +WKG
Subject   4243  ICG*SGKNTGYDERR*IAGQ*G*NGDSIGSNA*IKEDAHHTKS*CSGV*ALKSHIQSF*RQSGRSWVWKG  4452

Range 6: 4024 to 4131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 20/36(56%) 0/36(0%) Minus/Plus
Query      400  NESTNNN*PEA*ILCETGGGL*NAH*GFLRD*KHTQ  507
                +E  NNN P+  +LCE   GL*+ + G LRD*KHTQ
Subject   4024  DELANNNKPQTAVLCEASSGL*DTYRGVLRD*KHTQ  4131

Range 7: 4026 to 4169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 31/48(65%) 0/48(0%) Plus/Minus
Query      362  HQRRELPKCPRPPCVCF*SRKKPQWAFYKPPPVSHNI*ASG*LLFVDS  505
                HQRREL  CPRPPCVCF*SRK P+   YKP   SHN    G LLF  S
Subject   4026  HQRRELQICPRPPCVCF*SRKTPR*VSYKPLLASHNTAV*GLLLFASS  4169

Range 8: 4245 to 4373 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 18/43(42%) 0/43(0%) Plus/Minus
Query      158  *DSV*YSFSLILE*LLIALPFSPYLRVVPHLSSCLMFSRPRSH  286
                *D V* + SLI   L I  PF PY   +  LSS  +F   + H
Subject   4245  *DLV*CASSLI*ALLPIESPF*PY*PAIQRLSSYPVFLPLQPH  4373

Nucleotide Sequence (348 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
348

Descriptions

Alignments

Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052

Sequence ID: LC075489.1 Length: 4455 Number of Matches: 8

Range 1: 3269 to 3610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.7 bits(543) 0.0 104/114(91%) 0/114(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQINHQTHPT  342
                GKLRAIYG DTTSYIL+NFAMYNCENVLPNRFPVGKAANDRNVVSRVR VLKDRLPYCLDFEDFNSQHSPEAM+AVVLAYGDVFNKTLTEDQMRALQWTAD ISNQI H    T
Subject   3269  GKLRAIYGTDTTSYILANFAMYNCENVLPNRFPVGKAANDRNVVSRVRGVLKDRLPYCLDFEDFNSQHSPEAMRAVVLAYGDVFNKTLTEDQMRALQWTADSISNQIIHDNTGT  3610

Range 2: 3287 to 3598 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.3 bits(313) 0.0 61/104(59%) 0/104(0%) Minus/Minus
Query       19  LVVYLVRYWVCCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSV  330
                +V  LV Y V CPL+ PHLIF E FV++I+V QH   H F  +L +EV +VQ VWQPVL +    *HHVS+V C +HRKP+ *HIF +VHGKIRQY+AC +CSV
Subject   3287  VVYDLV*Y*VSCPLEGPHLIFRECFVKHIAVGQHYCPHCFRAVLAVEVFEVQTVWQPVL*HSPDS*HHVSIVGCLSHRKPIW*HIFAIVHGKIRQYIACGVCSV  3598

Range 3: 3285 to 3563 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 51/93(55%) 0/93(0%) Plus/Plus
Query       17  YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVSIVPKP*KPLCWLTEMYSTKRSLKIK*GRFNG  295
                +TEQ  QA Y  ILPCT  KMCY  GFRW +Q T ETWCQ     *RTGCHT WT +TS  S   K     CW T M  TK S KIK G  +G
Subject   3285  FTEQTPQAIYWRILPCTIAKMCYQIGFRWERQPTIETWCQESGEC*RTGCHTVWTSKTSTASTALKQCGQ*CWPTAMCLTKHSRKIKCGPSSG  3563

Range 4: 3274 to 3423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 39/50(78%) 0/50(0%) Minus/Minus
Query        6  FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIALS  155
                F T  TLDTTFLS AA PTGNL GNTFSQLYMAK  S+*LVVS P IALS
Subject   3274  FSTPLTLDTTFLSLAAFPTGNLFGNTFSQLYMAKFASI*LVVSVP*IALS  3423

Range 5: 3423 to 3551 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 23/43(53%) 0/43(0%) Minus/Minus
Query      155  PSFDLQ*AFC*IHLRKPTQRLSWLRDYADY*SPQSPSSMAACP  283
                P+FDL * FC* H R+PT   + L+  A  *S +SP+SMA CP
Subject   3423  PAFDLP*VFC*THRRRPTLLPALLQGCAGC*SLRSPNSMATCP  3551

Range 6: 3286 to 3567 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 52/94(55%) 0/94(0%) Plus/Plus
Query       18  IRSRYDKLHTV*FCHVQL*KCVTQQVSGG*SSKRQKRGVKGTSGSEGQAAIXXXXXXXQ*SA*SRSHESRCVGLRRCIQQNAH*RSNEGASMDS  299
                +R+R+ KL+T  FCHVQL KCVT+ VSGG  S+R KRGVK    ++GQ AIL GL  LQ  A   S+    VGLRRC+ QN H RSN G  +DS
Subject   3286  LRNRHHKLYTGEFCHVQLRKCVTK*VSGGKGSQR*KRGVKSQGSAKGQVAILFGLRRLQQPAQP*SNAGSSVGLRRCV*QNTHGRSNAGPPVDS  3567

Range 7: 3288 to 3404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 25/39(64%) 0/39(0%) Minus/Minus
Query       20  LTPRFCRLLLYPPETCWVTHFHSCTWQN*TVCSLSYLLR  136
                LTPRF R L +PPET  VTHF +CTWQN  V SL  L R
Subject   3288  LTPRFYRWLPFPPETYLVTHFRNCTWQNSPVYSLWCLFR  3404

Range 8: 3481 to 3519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 11/13(85%) 0/13(0%) Minus/Minus
Query      213  NTSP*ANTTAFMA  251
                NTSP*ANTTA +A
Subject   3481  NTSP*ANTTARIA  3519

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997472.1 Length: 4655 Number of Matches: 5

Range 1: 3298 to 3618 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 69/107(64%) 0/107(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQI  321
                GK RAIYG D TSY+LSNFA YNCENVLPN+FPVG+ AND NVV+RV  VL +R+P+CLDFEDFNSQHS   MKAV+ AY + F   LT +Q +A  WTA  +  QI
Subject   3298  GKQRAIYGTDLTSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQI  3618

Range 2: 3306 to 3452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 33/49(67%) 0/49(0%) Minus/Minus
Query        9  FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIAL  155
                F T  TL TTF S A+ PTGN  G+TFSQL  AKLDS *LV S PYIAL
Subject   3306  FSTPETLFTTFSSLASRPTGN*FGSTFSQL*NAKLDST*LVRSVPYIAL  3452

Range 3: 3455 to 3496 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 9/14(64%) 0/14(0%) Minus/Minus
Query      158  DY*SPQSPSSMAAC  199
                DY*SPQS    A C
Subject   3455  DY*SPQSQDRKAFC  3496

Range 4: 3313 to 3597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 34/95(36%) 0/95(0%) Minus/Minus
Query       16  CCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY  300
                C P  R  L  S+   E + +S +   H    +LTIEVLKV+     V+ +     HHV V+   +  K + *++ T+V  +IRQYVA +IC +Y
Subject   3313  CGPHCRLLLFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKTERHSVI*HSRNSVHHVFVIGISSDWKLIW*YVLTIVKREIRQYVASQICPIY  3597

Range 5: 3314 to 3499 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 26/62(42%) 0/62(0%) Plus/Plus
Query       17  YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVS  202
                Y  QI  ATYCLI   T V+  Y   F+  +   T+TW   +   * T C +  TLRTSIV+
Subject   3314  YMGQI*LATYCLISRFTIVRTYYQINFQSDEMPMTKTW*TEFREC*ITECLSVLTLRTSIVN  3499

Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997474.2 Length: 3666 Number of Matches: 5

Range 1: 2335 to 2655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 69/107(64%) 0/107(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQI  321
                GK RAIYG D TSY+LSNFA YNCENVLPN+FPVG+ AND NVV+RV  VL +R+P+CLDFEDFNSQHS   MKAV+ AY + F   LT +Q +A  WTA  +  QI
Subject   2335  GKQRAIYGTDLTSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQI  2655

Range 2: 2343 to 2489 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 33/49(67%) 0/49(0%) Minus/Minus
Query        9  FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIAL  155
                F T  TL TTF S A+ PTGN  G+TFSQL  AKLDS *LV S PYIAL
Subject   2343  FSTPETLFTTFSSLASRPTGN*FGSTFSQL*NAKLDST*LVRSVPYIAL  2489

Range 3: 2492 to 2533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 10/14(71%) 0/14(0%) Minus/Minus
Query      158  DY*SPQSPSSMAAC  199
                DY*SPQS   MA C
Subject   2492  DY*SPQSQDRMAFC  2533

Range 4: 2350 to 2634 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 35/95(37%) 0/95(0%) Minus/Minus
Query       16  CCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY  300
                C P  R  L  S+   E + +S +   H    +LTIEVLKV+  W  V+ +     HHV V+   +  K + *++ T+V  +IRQYVA +IC +Y
Subject   2350  CGPHCRLLLFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKTEWHSVI*HSRNSVHHVFVIGISSDWKLIW*YVLTIVKREIRQYVASQICPIY  2634

Range 5: 2351 to 2536 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 27/62(44%) 0/62(0%) Plus/Plus
Query       17  YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVS  202
                Y  QI  ATYCLI   T V+  Y   F+  +   T+TW   +   * T CH+  TLRTSIV+
Subject   2351  YMGQI*LATYCLISRFTIVRTYYQINFQSDEMPMTKTW*TEFREC*ITECHSVLTLRTSIVN  2536

Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997473.1 Length: 4619 Number of Matches: 5

Range 1: 3296 to 3610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 76/105(72%) 0/105(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISN  315
                GKLRAIYG D TSY+LSNFA YNCENVLP RFPVGK AND NVV+RV  VLKDRLPYCLDFEDFNSQHS  +MKAV+ AYGDV+ +  TE Q+ AL WTA+ + +
Subject   3296  GKLRAIYGTDLTSYVLSNFAFYNCENVLPKRFPVGKDANDANVVNRVAGVLKDRLPYCLDFEDFNSQHSVSSMKAVIYAYGDVYRQVFTEQQLEALAWTAESLDD  3610

Range 2: 3314 to 3592 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 40/93(43%) 0/93(0%) Minus/Minus
Query       19  CPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSV  297
                CP +   L+  E    YI+VS     H    MLT+E+ K+  VWQPV Q+   P +HVSVV  FT+R+P    IF V+  K+RQY+  +I SV
Subject   3314  CPCQSFQLLLCEHLPVYITVSIDYCLH*RHAMLTVEIFKI*TVWQPVFQHSCNPVYHVSVVGVFTNREPFWQDIFAVIKRKVRQYITSQIRSV  3592

Range 3: 3315 to 3560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 34/82(41%) 0/82(0%) Plus/Plus
Query       20  TEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVSIVPKP*KPLCWLTEMYSTKRS  265
                TE+I    YC  L   T KM    G R VK  TT TW  G +  *+TGCHT   L+ S V+I  + *+    LT MY+ + S
Subject   3315  TERI*LVMYCRTLRFITAKMSCQNGSRLVKTPTTLTW*TGLQEC*KTGCHTV*ILKISTVNIACRQ*RQ*SMLTVMYTGRCS  3560

Range 4: 3301 to 3450 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 31/50(62%) 0/50(0%) Minus/Minus
Query        6  FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIALS  155
                F T  TL TT  S A+LPTGN  G TFSQL  AK DS *LV S P IA S
Subject   3301  FNTPATLFTTLASLASLPTGNRFGKTFSQL*NAKFDST*LVRSVP*IARS  3450

Range 5: 3313 to 3594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 35/94(37%) 0/94(0%) Plus/Plus
Query       18  IRSRYDKLHTV*FCHVQL*KCVTQQVSGG*SSKRQKRGVKGTSGSEGQAAIXXXXXXXQ*SA*SRSHESRCVGLRRCIQQNAH*RSNEGASMDS  299
                +R+  D L TV  C + L KC+ + V G *  +R+ RG +G    E Q AIL   *  Q S *   +E   + LR CIQ   H  +   + MDS
Subject   3313  LRNGSD*LCTVELCVL*LRKCLAKTVPGW*RRQRR*RGKQGCRSVERQVAILSRF*RFQQST*RVVNEGSNLCLR*CIQAGVHRAATGSSGMDS  3594

Grapevine associated mycovirus 1 isolate Ctg150 putative RNA dependent RNA polymerase gene, partial cds

Sequence ID: GU108587.1 Length: 1225 Number of Matches: 7

Range 1: 946 to 1224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.6 bits(449) 0.0 84/93(90%) 0/93(0%) Plus/Plus
Query        1  GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQM  279
                GKLRAIYG DTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAM+ VVLAYGDVF ++LT++Q+
Subject    946  GKLRAIYGTDTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMREVVLAYGDVFRQSLTDEQL  1224

Range 2: 948 to 1100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 42/51(82%) 0/51(0%) Minus/Minus
Query        3  FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIALSF  155
                F TA TL+TTFLS AA PTGNL GNTFSQLYMAK DS+*LVVS PYIALSF
Subject    948  FNTALTLETTFLSLAAFPTGNLFGNTFSQLYMAKFDSI*LVVSVPYIALSF  1100

Range 3: 1158 to 1196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 9/13(69%) 0/13(0%) Minus/Minus
Query      213  NTSP*ANTTAFMA  251
                NTSP ANTT+ +A
Subject   1158  NTSPYANTTSLIA  1196

Range 4: 946 to 1221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 43/92(47%) 0/92(0%) Minus/Minus
Query        1  LIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVYSPELS  276
                L+ S+R  E+++V  H   H F T+LT++VLKVQ +W  VLQ+ S   ++VS+V  F+ R+ V *+IF VVHGKI QY+   + SVY  +LS
Subject    946  LLISQRLSEHVTVC*HYFPHCFRTVLTVKVLKVQTIW*SVLQHCSDSRNNVSIVGGFSDRESVR*YIFAVVHGKI*QYITRCVRSVYCSQLS  1221

Range 5: 947 to 1207 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 39/87(45%) 0/87(0%) Plus/Plus
Query        2  ESSGLYTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVSIVPKP*KPLCWLTEMYSTKR  262
                ES   YTE+ ++  YC ILPCTT KM Y T     K  T ET  +  E+ *RT  H  WTLRT  V+ V K *   C  T   S  R
Subject    947  ES*EQYTERTQRVIYCQILPCTTAKMYYRTDSLSEKPPTIETLFRESEQC*RTDYHIVWTLRTLTVNTVLKQ*GK*C*HTVTCSDSR  1207

Range 6: 989 to 1165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 31/59(53%) 0/59(0%) Minus/Minus
Query       44  SWLRDYADY*SPQSPSSMAACPSEPLVPLTPRFCRLLLYPPETCWVTHFHSCTWQN*TV  220
                S L+D  D *SPQSP++M  CPS  L     RF R  L+    C V HF SCTWQN TV
Subject    989  SLLQDCVDC*SPQSPNNMVVCPSTLL*LSKQRFYRWRLFRQGICSVIHFRSCTWQNLTV  1165

Range 7: 948 to 1115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 26/56(46%) 0/56(0%) Plus/Plus
Query        3  KAQGYIRSRYDKLHTV*FCHVQL*KCVTQQVSGG*SSKRQKRGVKGTSGSEGQAAI  170
                KA+  IR+ +++L+TV FCHVQL KC+T+Q+    S +R KR  +  S  EGQ  I
Subject    948  KAESNIRNGHNELYTVKFCHVQLRKCITEQIPCRKSRQR*KRCFESQSSVEGQTTI  1115

Nucleotide Sequence (412 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
412

Descriptions

Alignments

Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052

Sequence ID: LC075489.1 Length: 4455 Number of Matches: 5

Range 1: 2300 to 2683 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.0 bits(500) 0.0 97/128(76%) 0/128(0%) Plus/Plus
Query       27  G*RSDSEVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR  410
                G  SD EVV S+FGVAM G+MLQGV KSYFYA+IDQYIITRSKAMLA+FTRHFSGLY SV WDTPL+T ALYRDRLP+ + ++SMT  +IE+ GYPKITSGH IHYTYSEV KSTPRDK +RV +LAR
Subject   2300  GPSSDKEVVVSIFGVAMTGIMLQGVTKSYFYARIDQYIITRSKAMLALFTRHFSGLYGSVFWDTPLSTDALYRDRLPDEKPAKSMTPMEIESLGYPKITSGHHIHYTYSEVLKSTPRDKLNRVAELAR  2683

Range 2: 2290 to 2631 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.3 bits(313) 0.0 75/114(66%) 0/114(0%) Minus/Minus
Query       17  TSE*V*CI*CPDVIFG*PPASI*DSVIDSDNWFSGSLSLYNAFVFNGVSQSTDSYKPEKCLVNIANMALERVIIYWSIFA*K*LFSTPCNMTPNIATPNTDATTSLSLLYPKHT  358
                TSE V* I* PDVI G P  SI   VID   + SGSLSLY+A V  GVSQ TD Y PEKCLVN AN+AL+ VI+Y SI A*K*LF TPCNM P IATPN D TTSLS   P  T
Subject   2290  TSEYV*WI*WPDVILGYPRDSISIGVIDLAGFSSGSLSLYSASVLRGVSQKTDPYNPEKCLVNRANIALDLVIMY*SILA*K*LFVTPCNMIPVIATPNIDTTTSLSEEGPSDT  2631

Range 3: 2359 to 2661 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 41/101(41%) 0/101(0%) Plus/Plus
Query       86  HVARS*EKLLLRKNRPIYNNALQSHVSDIHKALLWFI*VSTLGHTVKHEGVIQRQAARKPIIRINDGISNRGRGLPEDHIRASNTLHLFRSAEKYSKG*TQ  388
                HV RS ++L LR+NR ++ N + S+VS IH ALL  I V  LGH  +H   IQ  A  +    IND   NR  G+  ++I  S  L++FR  +K++K  T+
Subject   2359  HVTRSDKELFLRENRSVHYN*V*SYVSSIH*ALLRIIWVCLLGHAPQH*CTIQG*AT*RKTG*INDADGNRIPGVS*NNIWPSYPLYVFRGTQKHAKRQTE  2661

Range 4: 2312 to 2485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 26/58(45%) 0/58(0%) Minus/Minus
Query       39  PKY*LI*TREVPCEYR*HGFGARYYILVYFCVEVTFLNSLQHDP*HRHSEHRRHYFTV  212
                PK   I*+ EVP E  *H F   Y +L+Y  VE+   +SL HDP H H E+R +Y  +
Subject   2312  PKDRPI*S*EVPSE*S*HSFRPSYNVLIYSRVEIALCHSL*HDPCHSHPEYRYNYLLI  2485

Range 5: 2546 to 2656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/37(32%) 0/37(0%) Minus/Minus
Query      273  FIPWSTFLHF*ISVMYLMP*CDLRVAPCLYLRFRH*F  383
                F+ W  F + *I ++ +M  C  R+        RH*F
Subject   2546  FVSWRAFEYL*IRIVDMMARCYFRIPQGFDFHRRH*F  2656

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997472.1 Length: 4655 Number of Matches: 1

Range 1: 2347 to 2712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 50/122(41%) 0/122(0%) Plus/Plus
Query       45  EVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR  410
                E   SV+GV M G+++   +  +F+A I QY++T+SKAML   TRHFS LYES  +D P +   L+RDR P    +E+MT  Q+E     KI+  H  H+T  +V KS  R +  R    +R
Subject   2347  EASKSVYGVTMSGLVIANGKAKFFFASIKQYLLTQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKISGAHHFHFTPMQVLKSIGRGRLERAIQASR  2712

Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997474.2 Length: 3666 Number of Matches: 1

Range 1: 1384 to 1749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 50/122(41%) 0/122(0%) Plus/Plus
Query       45  EVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR  410
                E   SV+GV M G+++   +  +F+A I QY++T+SKAML   TRHFS LYES  +D P +   L+RDR P    +E+MT  Q+E     KI+  H  H+T  +V KS  R +  R    +R
Subject   1384  EASKSVYGVTMSGLVIANGKAKFFFASIKQYLLTQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKISGAHHFHFTPMQVLKSIGRGRLERAIQASR  1749

Grapevine associated mycovirus 1 isolate Ctg150 putative RNA dependent RNA polymerase gene, partial cds

Sequence ID: GU108587.1 Length: 1225 Number of Matches: 3

Range 1: 22 to 360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.6 bits(390) 0.0 73/113(65%) 0/113(0%) Plus/Plus
Query       72  AMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR  410
                +M GV+LQGVE+SYFYAK++QY++TR+KAMLAI TRHFSGLYESV WD+PL T AL+RDRLP+   SE+M    IE  GYPKITSGH IHYTY+EV KS       R+  L+R
Subject     22  SMTGVLLQGVEQSYFYAKVNQYVLTRNKAMLAILTRHFSGLYESVYWDSPLETGALFRDRLPDRDQSEAMAAPSIERLGYPKITSGHHIHYTYTEVMKSVEPHLRKRIETLSR  360

Range 2: 24 to 314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 61/97(63%) 0/97(0%) Minus/Minus
Query       74  FCTSE*V*CI*CPDVIFG*PPASI*DSVIDSDNWFSGSLSLYNAFVFNGVSQSTDSYKPEKCLVNIANMALERVIIYWSIFA*K*LFSTPCNMTPNI  364
                F TS  V*C+* PDVIFG*P  SI  + I SD   SG+LSL  A V NG SQ TDSY PEKC V+IA++AL  V  YW  FA*K*L STPCN TP I
Subject     24  FITSVYV*CM*WPDVIFG*PNLSIDGAAIASDWSRSGNLSLNKAPVSNGESQYTDSYSPEKCRVSIASIALFLVKTYWFTFA*K*LCSTPCNSTPVI  314

Range 3: 57 to 314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 35/86(41%) 0/86(0%) Plus/Plus
Query      107  KLLLRKNRPIYNNALQSHVSDIHKALLWFI*VSTLGHTVKHEGVIQRQAARKPIIRINDGISNRGRGLPEDHIRASNTLHLFRSAE  364
                +LLLRK+ PI  N  Q +  +   AL   I*V  LG TV++   IQRQ AR   I  N     R  GL ++++  S+TL+++RS E
Subject     57  ELLLRKSEPICLNQKQGYAGNTDSALFRAI*VCILGLTVRNRCFIQRQVARSGPIGSNGCTIYRKIGLSKNYVGPSHTLYVYRSNE  314

Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997473.1 Length: 4619 Number of Matches: 2

Range 1: 2339 to 2662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 49/108(45%) 0/108(0%) Plus/Plus
Query       36  SDSEVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEV  359
                S++E   ++ GV M G+ L G   +Y YAK+DQY++TR KA++AI TRHF+GLY SV  + PLN +A++RDR P+++L       +I      KIT+ H IH+T  EV
Subject   2339  SENESNVNIMGVLMSGLRLAGDNCTYLYAKVDQYLVTRKKAVIAIMTRHFNGLYGSVFLNDPLNMEAMFRDRAPDDELMPKQNYEKICKKENTKITAQHHIHFTSEEV  2662

Range 2: 2338 to 2562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 30/75(40%) 0/75(0%) Minus/Minus
Query       35  SGSLSLYNAFVFNGVSQSTDSYKPEKCLVNIANMALERVIIYWSIFA*K*LFSTPCNMTPNIATPNTDATTSLSL  259
                SG+LSL  A +F G  ++TD Y+P K  V IA  A   V  YWS  A + +  +P    P+I TP      S SL
Subject   2338  SGALSLNIASMFKGSFKNTDPYRPLKWRVIIAITAFFLVTRYWSTLAYRYVQLSPAKRKPDINTPIMFTFDSFSL  2562