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Queries

Nucleotide Sequence (1402 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
141
282
423
564
705
846
987
1128
1269
1402

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
939.9 939.9 33% 0 94% ADO60926

Alignments

putative RNA-dependent RNA polymerase, partial [Grapevine associated chrysovirus-1]

Sequence ID: gb|ADO60926.1| Length: 957 Number of Matches: 1

Range 1: 180 to 644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
939.9 bits(2428) 0.0 439/465(94%) 0/465(0%) Plus/Plus
Query        1  VLRGDRAGDRDVNIHDLVRMFEQGMVPKECVDYYVRHSYVPTQFDFGVSMFEWSVAMAEIPPKLNKPREFDVTADMVDVFAPRGSKELYRANVTIRQLIQTFDIFSHADAYEIASQHVGEPQVFVTSILCAWKGILQNTSVNFIVKKWMGVNFHYWSDIMKSLHSYIRCSRFLMNTEITEQERQSLMYMDLLVGRGEYQIDEMAEVTLRQSDTYSSKHLSYNPDLRAFTNEQYIKDFSRSVQIAHMRIKHNPKPIQFTTFTEFYRARHTWITKGGLVSNTLPKGMKQFSAQIFDAVAATVEEIEGRHNKKSLFEMNEPYDILVGVNRHNFNITKTMIKYEVGKKDRTLLPGSLAHFIVFCYILMLAEKQEQIGSVRLNAMGDGDIRYFDKKMSTGTFHVLYDWADFNEQHSAWEMAQVIQELENVMPDTPDYHLFCSAIVEGMYEMGLQDKDGHLHKLWRGLYSG  1395
                VLRG+RAGDRDVNIHDLVRMFE GMVPKECVDYYVRHSYVPTQFDFGVSMFEWSVAMAEIPPKLNKP +FDV+ADM++VFAPRGSKEL+R+NVT+RQLIQTFDIFSH DAYEIAS HVGEPQVFVTS+L AWKGILQNTSVNFIVKKWMGVNFH+WSD+MKSLHSYIRCSRFLMNTEITEQ+RQSLMYMDLLVGRGEYQIDEMAEV+LRQSDTYSSKHLSYNPDL+AFTNEQYIKDFSRSVQIAHMRIKHNPKP+QFTTFT+FYRARHTWITKGGLVSNTLPKGMKQFSAQIFDAVAATVEEIEGRHNKKSLFEMNE YDILVGVNRHNFN+TKTMIKYEVGKKDRTLLPGSLAHFIVFCYILMLAEKQEQIGSVRLNAMGDGDIRYFDKKMSTGTFHVLYDWADFNEQHSAWEMAQVI+ELE VMPDTPDYHLFCSAIVEGMYEMGLQDK+GHLHKLWRGLYSG
Subject    180  VLRGERAGDRDVNIHDLVRMFENGMVPKECVDYYVRHSYVPTQFDFGVSMFEWSVAMAEIPPKLNKPEKFDVSADMIEVFAPRGSKELHRSNVTMRQLIQTFDIFSHDDAYEIASMHVGEPQVFVTSVLSAWKGILQNTSVNFIVKKWMGVNFHHWSDVMKSLHSYIRCSRFLMNTEITEQDRQSLMYMDLLVGRGEYQIDEMAEVSLRQSDTYSSKHLSYNPDLKAFTNEQYIKDFSRSVQIAHMRIKHNPKPLQFTTFTDFYRARHTWITKGGLVSNTLPKGMKQFSAQIFDAVAATVEEIEGRHNKKSLFEMNELYDILVGVNRHNFNVTKTMIKYEVGKKDRTLLPGSLAHFIVFCYILMLAEKQEQIGSVRLNAMGDGDIRYFDKKMSTGTFHVLYDWADFNEQHSAWEMAQVIKELETVMPDTPDYHLFCSAIVEGMYEMGLQDKEGHLHKLWRGLYSG  644

Nucleotide Sequence (511 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
52
104
156
208
260
312
364
416
468
511

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
305.1 305.1 33% 7.117e-94 85% ADO60926

Alignments

putative RNA-dependent RNA polymerase, partial [Grapevine associated chrysovirus-1]

Sequence ID: gb|ADO60926.1| Length: 957 Number of Matches: 1

Range 1: 788 to 956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.1 bits(780) 0.0 144/169(85%) 2/169(1%) Minus/Plus
Query        3  CVG--CVW*EGEEWMNLPEAVLHGVEEQGGLGVPDASNQVWILDKPVPEVNEEWYKVVVPDYKASKDYVKVLSDEMARFSIVIERQEELAQKLAVDSYDLDKSIDRMAWKKLLQFDGKPVGFRNVIEPMVNDDLMSSFIDFQIDESVTRKFDKASRYQEYINYLTVDSH  503
                C+   C   +GEEWMNLPEAVLHGVEEQGGLGVPDA+NQVWILDK VPEVNEEWYKVVVPDYKASKDYVKVLSDEMARFSIVI+RQEELAQKLAVDSYDLDKS+DR+AW+KLLQFDGK + +RN+IEPMVNDD+MSSF+DFQIDE +TRKFDKASRYQEYINYLTV+ H
Subject    788  CISHWCKIKDGEEWMNLPEAVLHGVEEQGGLGVPDAANQVWILDKNVPEVNEEWYKVVVPDYKASKDYVKVLSDEMARFSIVIQRQEELAQKLAVDSYDLDKSVDRIAWRKLLQFDGKAIAYRNIIEPMVNDDIMSSFVDFQIDEEMTRKFDKASRYQEYINYLTVEDH  956

Nucleotide Sequence (366 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
366

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
239.2 239.2 33% 9.92e-71 92% ADO60926

Alignments

putative RNA-dependent RNA polymerase, partial [Grapevine associated chrysovirus-1]

Sequence ID: gb|ADO60926.1| Length: 957 Number of Matches: 1

Range 1: 10 to 130 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.2 bits(609) 0.0 111/121(92%) 0/121(0%) Minus/Plus
Query        3  HGKTTIAHKYGFIDVDMLVTRKEHDDLAEDRASILAGQQNWLAHNTKWYARLNETLDLLDYSMPVIILVHTEELALELGARPIGCLKLKREVFERNIRDRDDLGKTFSRLNYTTLHTSKQV  365
                HGKTTIAHKYGF+DVDMLVTRKEHDDLAEDRASILAGQQ W+ HNTKWYARLN+TLDLLDYSMPVIILVHTEE+ALELGARPIGCLKL+R++FE NIRDRDDLGKTFSRLNYTTLHTSKQV
Subject     10  HGKTTIAHKYGFVDVDMLVTRKEHDDLAEDRASILAGQQTWMEHNTKWYARLNQTLDLLDYSMPVIILVHTEEIALELGARPIGCLKLRRDIFETNIRDRDDLGKTFSRLNYTTLHTSKQV  130

Nucleotide Sequence (312 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
312

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
186.4 186.4 33% 5.493e-52 80% ADO60926

Alignments

putative RNA-dependent RNA polymerase, partial [Grapevine associated chrysovirus-1]

Sequence ID: gb|ADO60926.1| Length: 957 Number of Matches: 1

Range 1: 329 to 432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.4 bits(472) 0.0 83/104(80%) 0/104(0%) Minus/Plus
Query        1  GVNFSAWSDLMKSLHSYVRCSRFLMNTEISEQDRQALMYLDLNVGRGEYQIDEMAEVTVRSAETYSSKHLSYDSDLKLFTNEQYVTDFSRGIQLAHMRIKHNPK  312
                GVNF  WSD+MKSLHSY+RCSRFLMNTEI+EQDRQ+LMY+DL VGRGEYQIDEMAEV++R ++TYSSKHLSY+ DLK FTNEQY+ DFSR +Q+AHMRIKHNPK
Subject    329  GVNFHHWSDVMKSLHSYIRCSRFLMNTEITEQDRQSLMYMDLLVGRGEYQIDEMAEVSLRQSDTYSSKHLSYNPDLKAFTNEQYIKDFSRSVQIAHMRIKHNPK  432