This html page seems to have been stripped by Galaxy.
Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.

Nucleotide Sequence (638 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
64
128
192
256
320
384
448
512
576
638

Descriptions

Alignments

Penicillium roqueforti ssRNA mycovirus 1 strain PRG42-7 RNA-dependent RNA polymerase and ORF2 genes, complete cds

Sequence ID: Length: 6002 Number of Matches: 3

Range 1: 3017 to 3367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 45/117(38%) 0/117(0%) Minus/Plus
Query       43  LPSLGTFNFPDVQLLVDSIMHYFTVLIWSNVPPNFKETTPTLRTFGRFAGCLGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLDK  393
                L  L +   P V + +D +     V +WS VPPN+KE T   R      G + V+APTG+GKST  ++HL L  G  + KIV++EPR+ LV  L  + K+   + C+G T G   D+
Subject   3017  LSPLKSIRLPRVDIFLDMVWQVLVVFVWSGVPPNYKELTHLARQLQELKGGVLVTAPTGTGKSTTMVKHLELTLGLFYNKIVIIEPRSALVKSLVPYCKNTLNMSCTGRTMGFDFDR  3367

Range 2: 2807 to 2839 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 8/11(73%) 0/11(0%) Minus/Plus
Query      571  LMVRHWLFCAY  603
                L++RHWLFC Y
Subject   2807  LLLRHWLFCWY  2839

Range 3: 3040 to 3288 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 31/83(37%) 0/83(0%) Plus/Minus
Query      122  TKRVLGSTTTIFLKRCPATRYRCWIKPVDLPLPVGAETPKQPANLPNVLRVGVVSLKFGGTLLQINTVK*CMMESTSNWTSGK  370
                T+ + GS  TI L + P+   RC    V  P+PVGA T   P +  N     V SL FGGT    NT + C   S +  T G+
Subject   3040  TRALRGSIMTILL*KRPSVNSRCLTMVVLFPVPVGAVTSTPPFSSCNWRARWVSSL*FGGTPDHTNTTRTCHTMSRNMSTRGR  3288

Fusarium graminearum dsRNA mycovirus-1, complete genome

Sequence ID: Length: 6621 Number of Matches: 3

Range 1: 3159 to 3479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 49/107(46%) 0/107(0%) Minus/Plus
Query       46  PDVQLLVDSIMHYFTVLIWSNVPPNFKETTPTLRTFGRFAGCLGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLD  366
                P V LL+++I+  F  L W+NVPPN+KE T  +R      G L V A TG+GKST FI+HL LV G R+ KI+V+EPR+ LV  L  +++    +D +G T G   D
Subject   3159  PRVDLLINTIVGVFIGLFWTNVPPNYKEVTHLVRQLPSMRGPLLVQAGTGTGKSTSFIKHLSLVVGARYNKIIVIEPRSALVRSLVPYVRDTLLVDATGCTAGYDFD  3479

Range 2: 2925 to 3038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 8/38(21%) 0/38(0%) Minus/Plus
Query      487  MVRHWLFCAYMSVRPKQRFGAWFNFAIARISSLQFFLN  600
                + RHW++  +          +W +    +++ +QF LN
Subject   2925  LARHWVYLFWFWSSRSAARSSWLSGITYKLNQVQFTLN  3038

Range 3: 3165 to 3392 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 27/76(36%) 0/76(0%) Plus/Minus
Query      133  SWFYHDNLPEAMSSNQIQVLDKTSRFTAPSGGRNTQTASEPTKCSKSGRSFLKIWRHIAPNQHSKVVHDGINQQLD  360
                S F  ++L     ++Q QVLD+ S F  PS   N Q      + S     FL I R I P Q ++  HD +NQQ++
Subject   3165  SGFNDNDLIVTGPNHQ*QVLDERSTFAGPSACLNQQRTPHGGELSNEMCHFLVIGRDIRPEQPNEDAHDRVNQQIN  3392

Pleospora typhicola fusarivirus 1 175 kDa protein and 59 kDa protein genes, complete cds

Sequence ID: Length: 6733 Number of Matches: 4

Range 1: 3243 to 3440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 32/66(48%) 0/66(0%) Minus/Plus
Query       43  LGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLDK  240
                L +SAPTGSGKST  ++H  +V GH ++KI+VV+PR+ +V  +  F+K+   +D SGAT+G+ LD+
Subject   3243  LVISAPTGSGKSTALVRHCAIVCGHLYKKIIVVQPRSSIVRTVVPFVKTTMSMDASGATSGMTLDQ  3440

Range 2: 3084 to 3221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 20/46(43%) 0/46(0%) Minus/Plus
Query      265  PDWLPSLGTFNFPDVQLLVDSIMHYFTVLIWSNVPPNFKETTPTLR  402
                PD  P +   +FPDV LLV+ +++Y   + W N+PPN+ +TT  LR
Subject   3084  PDLFPQVKGVSFPDVNLLVEQMLYYGQNIFWKNLPPNYADTTKHLR  3221

Range 3: 3251 to 3436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 26/62(42%) 0/62(0%) Plus/Minus
Query       47  SSLRPVVAPLQSKP*ADFMKFVKP*TKRVLGSTTTIFLKRCPATRYRCWIKPVDLPLPVGAE  232
                S + P+VAP  S     F K     T   LG TT IFL + P T  +   + V LP PVGAE
Subject   3251  SKVMPLVAPEASIDIVVFTKGTTVRTMEDLGCTTIIFLYKWPHTIAQ*RTRAVLLPDPVGAE  3436

Range 4: 2982 to 3194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 20/71(28%) 0/71(0%) Plus/Minus
Query      292  IWRHIAPNQHSKVVHDGINQQLDIREIKCAKGR*PIRQRDQREQTSHNQQI*LKLVLPTLSHNLAIQKELK  504
                IW  I P     ++   +++Q+DIR+      R  +R  ++ ++   ++ +*LK   P +  N AI+ ELK
Subject   2982  IWWKIFPEYILPIIEHLLHKQIDIRKAHTFDLRKQVRNANKAQKRYDSKIM*LKRPSPGIQLNFAIEYELK  3194

Rosellinia necatrix fusarivirus 1 genomic RNA, complete genome, strain: NW10

Sequence ID: Length: 6286 Number of Matches: 2

Range 1: 3231 to 3428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 35/66(53%) 0/66(0%) Minus/Plus
Query       43  LGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLDK  240
                L VSAPTGSGKST  ++ L    GH + K++V+EPR+L+V  +T + ++  GLD SGATTG+ LDK
Subject   3231  LAVSAPTGSGKSTALVKCLAENVGHLYEKLIVIEPRSLIVTSITPYTQTKLGLDSSGATTGMTLDK  3428

Range 2: 2847 to 3002 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 16/52(31%) 0/52(0%) Minus/Plus
Query      460  NNTTLMVRHWLFCAYMSVRPKQRFGAWFNFAIARISSLQFFLNCKIMTQGRQ  615
                N +TLMVRHW F  +  ++  ++   +F     +I++  F LN KI+++ ++
Subject   2847  NLSTLMVRHWGFLLWYHLKGGKQRAGFFTSIHLKIANANFMLNGKILSETKR  3002

Penicillium aurantiogriseum fusarivirus 1 174 kDa protein and 53 kDa protein genes, complete cds

Sequence ID: Length: 6139 Number of Matches: 3

Range 1: 3227 to 3415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 34/63(54%) 0/63(0%) Minus/Plus
Query       46  VSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLD  234
                + APTG+GKST  I +     G    KIVV+ PRT+L  GLT +MKS +G D SG+TTGL LD
Subject   3227  IVAPTGTGKSTAMIGYFRQQLGGTCPKIVVIVPRTILAVGLTTYMKSIWGDDISGSTTGLTLD  3415

Range 2: 2843 to 3001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 18/53(34%) 0/53(0%) Minus/Plus
Query      460  CNNTTLMVRHWLFCAYMSVRPKQRFGAWFNFAIARISSLQFFLNCKIMTQGRQ  618
                CN T L++RHWLF  Y   RP  R      F ++++++ QF +N  +  +  Q
Subject   2843  CNKTELLIRHWLFLLYCRWRPTTRAVRLLGFIVSKVANWQFGINGVVQFEAAQ  3001

Range 3: 3059 to 3178 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 11/40(28%) 0/40(0%) Minus/Plus
Query      283  PDWLPSLGTFNFPDVQLLVDSIMHYFTVLIWSNVPPNFKE  402
                P+ L  +     PD+ ++ D + +     IW++VP N+ E
Subject   3059  PEVLGPVTMVRLPDIGVISDLLWNKVLSTIWASVPSNYSE  3178