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Queries

Nucleotide Sequence (321 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
321

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
126.7 126.7 22% 9.146e-35 90% AQN80520

Alignments

triple gene block protein 3 [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AQN80520.1| Length: 80 Number of Matches: 1

Range 1: 10 to 80 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.7 bits(317) 0.0 64/71(90%) 0/71(0%) Plus/Plus
Query        2  LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC  214
                LVGAAIATLILAHVDSNNGDN GCLIRATGESILIENCGP EALASTVKEVLGGLKALGVS   +EIDY C
Subject     10  LVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC  80

Nucleotide Sequence (373 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
373

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
219.9 219.9 30% 3.227e-69 97% AAX40974

Alignments

triple gene block protein 1 [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AAX40974.1| Length: 221 Number of Matches: 1

Range 1: 1 to 111 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.9 bits(559) 0.0 108/111(97%) 0/111(0%) Minus/Plus
Query        3  MNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  335
                MNNLVKALS FEFVGV+ VLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA
Subject      1  MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  111

Nucleotide Sequence (490 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
490

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
227.3 227.3 22% 2.536e-71 100% ALP32117

Alignments

24.4 kDa protein [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|ALP32117.1| Length: 221 Number of Matches: 1

Range 1: 114 to 221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.3 bits(578) 0.0 108/108(100%) 0/108(0%) Minus/Plus
Query      167  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ  490
                IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ
Subject    114  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ  221

Nucleotide Sequence (509 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
51
102
153
204
255
306
357
408
459
509

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
269.6 269.6 26% 2.483e-87 96% BAF34849

Alignments

RNA-dependent RNA polymerase, partial [Grapevine rupestris stem pitting-associated virus]

Sequence ID: dbj|BAF34849.1| Length: 266 Number of Matches: 1

Range 1: 133 to 266 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
269.6 bits(688) 0.0 129/134(96%) 0/134(0%) Plus/Plus
Query       29  GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID  430
                G  S AFAGDDMCANSRLR KTEHEGFLNMICLKAKV FVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID
Subject    133  GSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID  266

Nucleotide Sequence (472 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
48
96
144
192
240
288
336
384
432
472

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
295.4 295.4 32% 1.977e-88 97% AQN80517

Alignments

replicase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AQN80517.1| Length: 2161 Number of Matches: 1

Range 1: 1321 to 1469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.4 bits(755) 0.0 144/149(97%) 0/149(0%) Minus/Plus
Query        3  GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  449
                G+ G  SDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ
Subject   1321  GLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  1469

Nucleotide Sequence (199 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
93.6 93.6 24% 3.045e-21 98% BAF34850

Alignments

24.4 kDa hypothetical protein [Grapevine rupestris stem pitting-associated virus]

Sequence ID: dbj|BAF34850.1| Length: 221 Number of Matches: 1

Range 1: 1 to 48 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(231) 0.0 47/48(98%) 0/48(0%) Minus/Plus
Query        3  MNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  146
                MNNLVKALSTFEFVG YSVLRFPVVVHSVPGSGKSSLIRELVTEDESF
Subject      1  MNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  48

Nucleotide Sequence (184 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
19
38
57
76
95
114
133
152
171
184

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
96.3 96.3 26% 2.538e-22 98% ABD79043

Alignments

triple gene block [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|ABD79043.1| Length: 221 Number of Matches: 1

Range 1: 1 to 48 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.3 bits(238) 0.0 47/48(98%) 0/48(0%) Minus/Plus
Query        3  MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  146
                MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDESF
Subject      1  MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF  48

Nucleotide Sequence (151 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
16
32
48
64
80
96
112
128
144
151

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
77.4 77.4 26% 1.529e-15 97% BAF34850

Alignments

24.4 kDa hypothetical protein [Grapevine rupestris stem pitting-associated virus]

Sequence ID: dbj|BAF34850.1| Length: 221 Number of Matches: 1

Range 1: 17 to 55 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.4 bits(189) 0.0 38/39(97%) 0/39(0%) Plus/Plus
Query        2  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL  118
                YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAG+
Subject     17  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGV  55