Nucleotide Sequence (492 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
115.2 | 115.2 | 32% | 5.964e-24 | 32% | KP900887.2 | |
102.8 | 102.8 | 29% | 3.16e-20 | 32% | HE579546.1 | |
101.4 | 101.4 | 29% | 8.195e-20 | 34% | AF296440.1 | |
101.4 | 101.4 | 29% | 8.195e-20 | 34% | NC_007540.1 | |
64.3 | 119.4 | 29% | 1.93e-19 | 35% | AF297177.1 |
Alignments
Macrophomina phaseolina chrysovirus 1 isolate TN263 capsid protein gene, complete cds
Sequence ID: KP900887.2 Length: 3462 Number of Matches: 1
Range 1: 962 to 1435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 51/158(32%) | 0/158(0%) | Plus/Plus |
Query 15 NSHFSCRMAADNMLASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLVHTILAEQHKSDKLPDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKIDDGD 488 N F + A +LASI+KY+ D + L+ A V ACS+ +N+Y +++ LP VV+ DL+ + Q+ S P V+ + VGR+HQM + ++DV+ A ++TTKQG +IR YL+ + + G I + P M +++++ + D Subject 962 NVQFRVSLQASQVLASIVKYSRDVGVMSYLQSALVTACSLQQNRYFSKVGLPKVVAYSDLLQPAMIHQNVSAPRPIVSHEMGKGVGRIHQMLAFMTVRDVITAGQMTTKQGFDGAQSIRLYLSQQEDLIARMGSYFTDIAILEANPQMKYISRLTERD 1435
Uncultured chrysovirus genomic RNA containing putative CP, contig 469Hv1_454_1
Sequence ID: HE579546.1 Length: 1643 Number of Matches: 1
Range 1: 758 to 1189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 46/144(32%) | 0/144(0%) | Plus/Plus |
Query 51 MLASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLVHTILAEQHKSDKLPDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKIDD 482 +L+S+ +YA+D + + A +IA S+ +N+Y + ALP VVS VDL+ + + KS P +T +GR+HQM ++KD+ AA+++ Q SA + + Y++ + G QL G+P+ T + ++ IDD Subject 758 VLSSVCRYASDTDCESKIHAALLIASSLMQNRYFAKAALPKVVSHVDLMMPAVTKTDKSSFRPQITAELAVSLGRLHQMVSFAMVKDLATAAEMSASQRVSAVSHVLEYMSRYAETTRTMGMQLTGVPVLEGTEDLDFIAGIDD 1189
Penicillium chrysogenum virus segment 2 major capsid protein gene, complete cds
Sequence ID: AF296440.1 Length: 3200 Number of Matches: 1
Range 1: 1094 to 1525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 49/144(34%) | 0/144(0%) | Plus/Plus |
Query 57 ASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLVHTILAEQHKSDKLPDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKIDDGD 488 +SI+ YA D S L+EA +IACS+ EN+Y ++I LPTVVS DL+ Q+ + + ++ + VGR+HQM ++ KD++ A + ++ G IR YL +++ + + +L GI L+ TP M +++D D Subject 1094 SSILTYAMDTSCTDLLQEAQIIACSLQENRYFSRIGLPTVVSLYDLMVPAFIAQNSALEGARLSGDLSKAVGRVHQMLGMVAAKDIISATHMQSRTGFDPSHGIRQYLNSNSRLVTQMASKLTGIGLFDATPQMRIFSEMDTAD 1525
Penicillium chrysogenum virus segment 2, complete genome
Sequence ID: NC_007540.1 Length: 3200 Number of Matches: 1
Range 1: 1094 to 1525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 49/144(34%) | 0/144(0%) | Plus/Plus |
Query 57 ASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLVHTILAEQHKSDKLPDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKIDDGD 488 +SI+ YA D S L+EA +IACS+ EN+Y ++I LPTVVS DL+ Q+ + + ++ + VGR+HQM ++ KD++ A + ++ G IR YL +++ + + +L GI L+ TP M +++D D Subject 1094 SSILTYAMDTSCTDLLQEAQIIACSLQENRYFSRIGLPTVVSLYDLMVPAFIAQNSALEGARLSGDLSKAVGRVHQMLGMVAAKDIISATHMQSRTGFDPSHGIRQYLNSNSRLVTQMASKLTGIGLFDATPQMRIFSEMDTAD 1525
Helminthosporium victoriae 145S virus segment 2 putative capsid protein mRNA, complete cds
Sequence ID: AF297177.1 Length: 3134 Number of Matches: 2
Range 1: 1371 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 28/81(35%) | 0/81(0%) | Plus/Plus |
Query 237 PDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKID 479 P V +G++HQM M L IKD+L AA+ +TK G + + + YL ++ + + L MTP M W+ KID Subject 1371 PSVAKELAISIGKLHQMCMFLTIKDILVAARGSTKAGFNYSSVVESYLTTQEEVVSVMNASVTPLRLLEMTPQMKWMYKID 1613
Range 2: 1140 to 1328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 22/63(35%) | 0/63(0%) | Plus/Plus |
Query 9 GVNSHFSCRMAADNMLASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLV 197 G + ++ + ++ASI +YA + + LE A V A S+ N+YL ++ LP VVS +DL+ Subject 1140 GSSVNYHVELTPQMVMASITQYATESGIADELESALVCASSLYHNRYLARVGLPRVVSSIDLI 1328