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Queries

Nucleotide Sequence (781 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
79
158
237
316
395
474
553
632
711
781

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
451.9 1774.2 35% 3.171e-126 46% NC_016509
128.4 199.2 15% 7.674e-29 54% NC_003604
94.5 94.5 11% 1.236e-18 48% NC_010434
101.9 168.0 11% 7.678e-21 48% NC_018458
88.6 146.2 22% 2.309e-19 22% NC_004667

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 9

Range 1: 5492 to 6241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
451.9 bits(980) 0.0 204/250(82%) 0/250(0%) Minus/Plus
Query       31  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTENDVVRRSGVPGSDGKVSEVDKSLQXXXXXXXXXXXXGESVATDHQSVSKCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANA  780
                G HADDE+CY SGVSVVTVNLNG+ARFRVRSNKTG+I EHLL DGDVFVMS GMQRD KH+VESLD+GRVSITLRNATVDY KR+AT+G R + +V  +S V  +DGK S+  K L  PVPSSGV SSSGESVAT  QS SK TIG AVE GC+DK+SWVLGEDPVLGI+SFNDV+YCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANA
Subject   5492  GFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLRNATVDYCKREATEGKRVKGEVTPQSRVSVNDGKTSKEAKGLLGPVPSSGVSSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANA  6241

Range 2: 5491 to 6240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
414.4 bits(898) 0.0 189/250(76%) 0/250(0%) Plus/Minus
Query       32  AFATALKFASYTRNPGRFSYTANGNLCPTLLSVLATRSRALFNLMNKSKHRRAKYMMNSIAGASVPAAFRSLQYMTSLKERMPKTGSSPKTQLSLSTHPVSTATPIVHFETLWWSVATLSPEEERTPLLGTGRCRLLSTSDTFPSLPGTPDRRTTSFSVRVPSVASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*IP  781
                AFAT LKFASYTR PGRFS TA+GNLCPTLLSVLATRSRA F+LMNKSKHRRAKY+MNSIAGASVPA FRSLQY TSLK+ +PKTGSSP TQLSLS HP+STA PIV F+ L  +VATLSPEEE TP LGTG  R L++ D FPS   T D   TS   R+PSVASR  *STVALR+V+LTLPSSKDST CL SRCIP LITKTSPS  +CS I PVLF+RTL RA PF+FTVTTLTPD *H SSSA* P
Subject   5491  AFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRTVATLSPEEELTPELGTGPSRPLASFDVFPSFTDTRD*GVTSPLTRLPSVASRLQ*STVALRNVILTLPSSKDSTECLKSRCIPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NP  6240

Range 3: 5492 to 6223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 127/244(52%) 0/244(0%) Plus/Minus
Query       49  EIRVIHT*PWEILVYGQRKFVPDPLVRFSNQITSPFQLDE*VEAPPR*VHDELNCWGLSTRSLQILAVYDIIERANA*DRVLS*DPTFLIHTPRLHSYTNSTLRNALVVGSYTFTRGRADTTARHRSLQTFIHL*HLPITSWYTGSTYDIVFGTRAISSIALLVIHSSIAQCYAHSPIIQRLHRVLMIALHPRAHHKDVTVVKQMLGNLSCLIRAHSKPSPTIQIHSNNTYARRVASLIISMNP  780
                EIRV+H+*  +ILV  +RK V    VRFSN+I+   QLDE +E  P *+H+ELN  G STR LQI AVYDIIE     D V +* PT L+ TP LHS  +S L  AL  G +TF   R +    HRS  TF  L  LP+   Y G   +  F   A SS AL +IHS +A C  H P IQR HR+L I LHPRAHH+D+T+ ++ML NLS LIR HSK S TIQI+ +N + R VA LIISM P
Subject   5492  EIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPNGRHTFA*RRTNP*TWHRSQ*TFSFLRRLPVIHRYPGLRSNFAFNALAFSSFALAIIHSGVA*CNTHPPFIQRFHRMLKITLHPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKP  6223

Range 4: 5491 to 6240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.5 bits(512) 0.0 126/250(50%) 0/250(0%) Minus/Plus
Query       32  RDSC***EMLRVWRKCCYCESEWSGSV*SALE*DRKDYRAFA*RR*RLCDELGDAARS*ARGGVFG*WESEHNTAQCYCGLQEARCY*WHAYRKRCRTSIRCTRK*WEGVRGG*KSAATCAEQWCPLFLG*KCSYRPPKRFEVYYWCSCGDGVCG*GKLGLRRGPCLRHSLFQ*CHILQGSEGCGY*GPSN*VHHVLSAAVLRLIHQVEKGS*SGC*NGQEGRAQISVGRIRESPRVTCV*REFQGGSEC  781
                R SC***EML +W + C+ + EWSGS+*SA+E*D +D RA +   * L DE GDAA  *A GG+FG* E E+   Q +CGL +AR Y*  A  +R  +SI    +* E V G *+S  TCA+     F   KC  R  KR +VYY  SCGDGV   G+LG+R  P L  ++ Q*C ILQ SE  GY* P +*VH+V S A+ R +HQ E  + S C*NGQ+ R Q+S   +RES   T V REFQ G +C
Subject   5491  RVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGDAA*F*AFGGIFG*REGEYYITQRHCGLLQARSY*RQAR*RRSYSSIPGIGE*REDVEGS*RSTGTCAKFRG*FFFRRKCGDRSAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKC  6240

Range 5: 5574 to 6215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.9 bits(419) 0.0 108/214(50%) 0/214(0%) Minus/Plus
Query       57  ECARIRQERLPSICLTTVTSL**ARGCSAIISTRWSLWMMGE*A*HCAMLLWITRSAMLLMARVPKTMSYVDPVYQEVMGRCQRWIKVCSDLCRAVVSALPRVKV*LPTTKAFRSVLLV*LWRRGVWIRKVGS*ERTLS*AFALSMMSYTARI*RLRVLRPQQLSSSCT*RGGASTYSSS*KGLVIWLLKRTRGSGTNFRWPYTRISQGYVCMT  698
                EC RIR+ERL SI    V S **ARGCS I+S RW+LWM G *  H A  LWI  SA LL A   K    ++P Y+ + GR +R +KV  DLC+     L + KV  P  KA +S+L   LWR GV  R VG * +T S  +  SMMSYTA+I*R RVL+P++LSS C * G  S  SSS*    I LLKRT+   T+FR  +TRI   Y C T
Subject   5574  ECGRIRRERLSSIFWVMVMSS**ARGCSVILSIRWNLWMKGG*VLHYATPLWIIASAKLLKASALKAKLLLNPGYR*MTGRRRRKLKVYWDLCQVQGLVLLQAKVWRPFGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTT  6215

Range 6: 5493 to 5534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      738  GFMLMMRDATRLA*  779
                GFMLMMR+AT L *
Subject   5493  GFMLMMRNATHLV*  5534

Range 7: 5667 to 6056 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 60/130(46%) 0/130(0%) Plus/Minus
Query      216  GPQYPQPSDPCSI*HH*KSECLRQGPLLRPNFPYPHTPSPQLHQ*YTSKRFGGR*LHFHPRKSGHHCSAQVAADFYPPLTPSHHFLVHRIDVRHRFRYACHQ*HRASCNPQ*HCAVLCSLSHHPKTPPRA  605
                G QYP+ SD CSI HH*+    R G  L PN P  +TPSPQL +* T  RF  R  HF  +K+     AQV  D   P T S H  +  I+   R   AC Q* RA  NPQ  C +  S S HPK PP A
Subject   5667  GLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAERSPHFRLKKN*PLNLAQVPVDL*LPSTSSRHSPIPGIEE*LRL*RACLQ*LRACNNPQWRCVM*YSPSLHPKIPPNA  6056

Range 8: 5493 to 5591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query      681  SYSSAL*TEPDHSDSQ*QHLRQTRSISHHQHES  779
                SYS+AL*+EPDHS+ +*Q   Q  SISHHQHE+
Subject   5493  SYSTAL*SEPDHSNLR*QRSHQMCSISHHQHET  5591

Range 9: 6129 to 6248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query       24  LRVHSLPP*NSRHTHVTLGDSRIRPTEICARPSCPF*QPD  143
                L  H  P *NSR T V   DSR    E C    CPF*Q D
Subject   6129  LPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQD  6248

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 2

Range 1: 2067 to 2351 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 55/95(58%) 0/95(0%) Minus/Plus
Query      496  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATDGTRTEND  780
                G HADDE CY  G SVVTVNL+G A F V+ N++GKI +  L DGDV+VM  GMQ+ HKH V S  DGR SITLRN TVDY+ R   + +  E D
Subject   2067  GFHADDEPCYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGMQQTHKHRVTSHTDGRCSITLRNKTVDYEARKGDEDSEYEED  2351

Range 2: 2075 to 2308 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 42/78(54%) 0/78(0%) Plus/Minus
Query      539  *STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA  772
                *STV  R VML  PS  + T CL*  CIP  IT TSPS S    IFP  F  T   A P + TVTT  P  *H SSSA
Subject   2075  *STVLFRRVMLQRPSV*EVTLCL*VCCIPGPITYTSPSCSSFFSIFPD*FSFTSKVASPCKLTVTTEPPGR*HGSSSA  2308

Lolium latent virus, complete genome

Sequence ID: Length: 7674 Number of Matches: 1

Range 1: 2356 to 2619 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 42/88(48%) 0/88(0%) Minus/Plus
Query      517  GIHADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDATD  780
                G+HADDE CY    ++VT+NL G A F +  N         L   D+  M SGMQ  H+HAV SL +GRVSIT RN T DY ++ A D
Subject   2356  GLHADDEECYEPDSTIVTLNLYGNADFLIERNTDKASETITLQHNDMLFMPSGMQVTHRHAVCSLYEGRVSITFRNKTKDYLRKSAPD  2619

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 2

Range 1: 2107 to 2358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 40/84(48%) 0/84(0%) Minus/Plus
Query      523  HADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLRNATVDYKKRDA  774
                HADDE+CY  G  VVT+N++G A F ++ N   ++    L+DGDV VM  G+Q ++KH+V    +GR+S+T RN TVDY   DA
Subject   2107  HADDEKCYLPGSCVVTLNMHGTAEFMLKENGKEEVHRVTLEDGDVLVMPEGVQENYKHSVLVKSEGRISLTFRNKTVDYMNSDA  2358

Range 2: 2106 to 2357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 40/84(48%) 0/84(0%) Plus/Minus
Query      524  ASRFL*STVALRSVMLTLPSSKDSTACL*SRCIPELITKTSPSSSKCSVIFPVLFERTLNRARPFRFTVTTLTPDA*HLSSSA*  775
                AS F+*STV   +V L  PS   ST CL*    P  IT+TSPSS          F  ++N A P  F VTT  P  *H SSSA*
Subject   2106  ASEFM*STVLFLNVRLIRPSDLTSTECL*FS*TPSGITRTSPSSRVTLCTSSFPFSFSMNSAVPCIFRVTTQEPGR*HFSSSA*  2357

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 3

Range 1: 5013 to 5231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 35/73(48%) 0/73(0%) Minus/Plus
Query      556  HADDERCYASGVSVVTVNLNGRARFRVRSNKTGKITEHLLDDGDVFVMSSGMQRDHKHAVESLDDGRVSITLR  774
                HADDE CY S   ++TVNL G+A F  +  K GK+    +  GD F+M  G QR H H+V S+D+GR+S+T R
Subject   5013  HADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  5231

Range 2: 5409 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 18/81(22%) 0/81(0%) Minus/Plus
Query      115  KCTIGVAVETGCVDKESWVLGEDPVLGIRSFNDVIYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV  357
                + T  +  E   V K  W+  ++PV+ +      +  + +K   +E   +E++ YLA      +  L  AR++   T + V
Subject   5409  RSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV  5651

Range 3: 5655 to 5702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 10/16(62%) 0/16(0%) Minus/Plus
Query       61  KFPLAVYENLPGLRVY  108
                K P  VYE+LPG  VY
Subject   5655  KVPNQVYESLPGFHVY  5702

Nucleotide Sequence (425 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
425

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
289.3 1059.4 24% 1.307e-77 59% NC_016509

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 3221 to 3616 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
289.3 bits(625) 0.0 123/132(93%) 0/132(0%) Plus/Plus
Query       27  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFQFVRTVPATVTLHLVAETNPCFTDRSTLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILKLMRADEKAKAEKKGLEVDVKDITEDDIL  422
                LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNF+FVRTVPATVTLHLVAETNPCFTDRS LLDEGLMAYRLHLRNGTNIKVAKDLVREAHKIL+ MRA EKAKAE KGLEVD ++ITEDDIL
Subject   3221  LWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATVTLHLVAETNPCFTDRSMLLDEGLMAYRLHLRNGTNIKVAKDLVREAHKILRSMRAAEKAKAESKGLEVDEREITEDDIL  3616

Range 2: 3211 to 3528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 89/106(84%) 0/106(0%) Minus/Minus
Query       17  RIL*ASRTRSLATLMFVPFRRCNL*AINPSSNNVDLSVKQGLVSATRCSVTVAGTVRTN*KFWSIKTSKFDPKACSIVKAYSFIPEKKELQSFRTIKTMQFHNIAK  334
                RIL ASRTRSLATL+FVP RRCNL*AI PSSNN+DLSVKQGLVSATRCSVTVAGTVRTN KF SI TS+ DP AC+IVKAYSFIPEKKELQSFRTIKT+QFH   +
Subject   3211  RILCASRTRSLATLIFVPLRRCNL*AIKPSSNNIDLSVKQGLVSATRCSVTVAGTVRTNRKF*SINTSRLDPSACNIVKAYSFIPEKKELQSFRTIKTIQFHKFPR  3528

Range 3: 3221 to 3619 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 79/133(59%) 0/133(0%) Minus/Minus
Query       27  RQNIILGYVFHIHF*AFLLGFRLLISPHKLQNLVSLPHQILSDLNVRPVPKMQPVSH*SLIQ*RRSISETGISFRHQM*RNCGRYCTYELKILVHQNIQVRP*GLQHCQSILVHPRKERATKLPYDQDDAIPQ  425
                RQ+II      I+   F L  RL    H  QN V   + ILSDL++RPV ++QPVSH +LIQ* RSISET +  RHQM*R+ GR  TYE KIL+HQ++Q+RP  LQH QS+L+HPRKERATKLPYDQ+D IPQ
Subject   3221  RQDIIFSDFSLINLQTFALSLRLFCGSHAPQNFVRFTN*ILSDLDIRPVTEVQPVSHQTLIQ*HRSISETRVGLRHQM*RHRGRNRTYEPKILIHQHVQIRPQRLQHSQSVLIHPRKERATKLPYDQNDTIPQ  3619

Range 4: 3222 to 3530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 67/103(65%) 0/103(0%) Plus/Plus
Query       28  CGIASS*SYGSFVALSFRG*TSML*QCCRP*GRTWMF*WTRIFSSYVQYRPQLRYIWWRKLIPVSLIDRRYWMRD*WLTGCIFGTGRTLRSLRIWCGRLTRF*  336
                CGI S *SYGSFVALSFRG* S L* CCR  G  W  *W +IF SYV++ P+ RYIWWR+   VSLIDR YWMR *WLTGC   TGR  RSLRI   + T+F*
Subject   3222  CGIVSF*SYGSFVALSFRG*MSTL*LCCRRWGLIWTC*WIKIFGSYVRFLPR*RYIWWRRPTLVSLIDRCYWMRV*WLTGCTSVTGRISRSLRI*FVKRTKF*  3530

Range 5: 3217 to 3486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 60/90(67%) 0/90(0%) Plus/Plus
Query       23  DVVELHRLDRTEAL*LFLFGDERVCFDNAAGLRVELGCFDGPEFSVRTYSTGHSYATSGGGN*SLFH**IDVIG*GINGLQVASSERDEH  292
                ++VEL+R DRTEAL*LFLFGDE V FD  AG  V  G  DG +FSVRTY + H  ATSGGG+  LFH**IDVIG*G +GLQVA   RDE+
Subject   3217  ELVELYRFDRTEAL*LFLFGDE*VRFDYVAGAGV*SGRVDGSKFSVRTYGSCHGDATSGGGDQPLFH**IDVIG*GFDGLQVAPP*RDEY  3486

Range 6: 3234 to 3464 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 53/77(69%) 0/77(0%) Minus/Minus
Query       40  ATCKPLIPHPITSIYQ*NRD*FPPPDVA*LWPVLYVRTENSGPSKHPSSTLRPAALSKHTRSSPKRKSYKASVRSRR  270
                ATCKP  PHPITSIYQ*N+   PPPDVA  W   YVRTEN  PS  P  T  PA  SK T SSPKRKSYKASVRS+R
Subject   3234  ATCKPSNPHPITSIYQ*NKGWSPPPDVASPWQEPYVRTENFDPSTRPD*TPAPAT*SKRTHSSPKRKSYKASVRSKR  3464

Nucleotide Sequence (326 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
326

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
186.4 927.6 25% 7.881e-47 77% NC_016509

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 9

Range 1: 4886 to 5200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.4 bits(409) 0.0 89/105(85%) 0/105(0%) Minus/Plus
Query        4  RCIVDKGKKVVDYDEELNMRKEKRRLSMEKRREEHGGLIPVVFKEPKCERQXXXXXXXXEGYLCLSSSKVERGEATPSGCKSADGKCISEESPERKTESSAIIKE  318
                R IVDKGKKVVDYDEELNMRKEK RL +EKRREEHGGLIPVVFKEPKCE +DD+S+EESEGYLCLSS+KVERG+A+PSGCKSAD K ISEESPERKT+SSAII++
Subject   4886  RRIVDKGKKVVDYDEELNMRKEKCRLIIEKRREEHGGLIPVVFKEPKCEGKDDESEEESEGYLCLSSTKVERGDASPSGCKSADCKSISEESPERKTKSSAIIED  5200

Range 2: 4880 to 5038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 47/53(89%) 0/53(0%) Plus/Minus
Query      166  LPLTLRFFKHNRN*ATMLFASLLHRQPALLLPHIQLFVVINDLLPFIDDAPQL  324
                LPLTLRFFKHNRN*ATMLF+SLL+ QPALLLPHIQLFVVINDLLPFID+ P+L
Subject   4880  LPLTLRFFKHNRN*ATMLFSSLLYNQPALLLPHIQLFVVINDLLPFIDNTPRL  5038

Range 3: 5065 to 5202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 38/46(83%) 0/46(0%) Plus/Minus
Query        2  SSLIIADDSVFLSGLSSDIHFPSADLQPLGVASPRSTLDELKHR*P  139
                +S IIADD VFLSGLSSDI   SADLQPLG ASPRSTL ELKHR*P
Subject   5065  TSSIIADDFVFLSGLSSDILLQSADLQPLGEASPRSTLVELKHR*P  5202

Range 4: 4939 to 5199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 67/87(77%) 0/87(0%) Minus/Plus
Query        5  YAEGEAQAVYGEETRRAWWPNSCCV*RTEV*AAG**FG*RERRLSVLKLIQSGTW*SYAQWL*VR*WKVYIGGKPGEKDGIVSDYQR  265
                YAEGE Q  Y EETRRAWWPNSCCV*RTEV*  G   G RERRLSVLKL QSG W  +AQWL*VR* + YIGGKPGEKD IVSDY+R
Subject   4939  YAEGEVQVDYREETRRAWWPNSCCV*RTEV*GEGRRIGRRERRLSVLKLYQSGAWRRFAQWL*VR*LQEYIGGKPGEKDEIVSDYRR  5199

Range 5: 4887 to 5150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 71/88(81%) 0/88(0%) Minus/Plus
Query       54  GASSIKGRRSLITTKS*ICGRRSAGCLWRRDAKSMVA*FLLCLKNRSVSGRMMIRMKRAKAICA*AHPKWNVVKLRPVVVSPLMESVY  317
                G  SIKGRRSLITTKS*ICGRRSAG L RRD KSMVA*FLLCLKNRSV GR   R KRAKAICA*A PKW+V  LRPVVVSPL+  VY
Subject   4887  GVLSIKGRRSLITTKS*ICGRRSAG*L*RRDEKSMVA*FLLCLKNRSVRGRTTNRKKRAKAICA*ALPKWSVATLRPVVVSPLIARVY  5150

Range 6: 4977 to 5192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 56/72(78%) 0/72(0%) Plus/Minus
Query       12  *SLTIPSFSPGFPPIYTFHQRTYNHWA*LHHVPLWMSLSTDSLRSLHPNHHPAAHTSVL*TQQELGHHALRV  227
                *SLTI SFSPGFPPIY+ +QRTYNHWA   H PLW SLSTDSLRSL P   P+ HTSVL*TQQELGHHAL V
Subject   4977  *SLTISSFSPGFPPIYSCNQRTYNHWAKRRHAPLW*SLSTDSLRSLLPIRRPSPHTSVL*TQQELGHHALLV  5192

Range 7: 4884 to 4931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 13/16(81%) 0/16(0%) Plus/Minus
Query      273  LRRNQRPSSLYRRCTS  320
                LRRNQRPSSLYR+  S
Subject   4884  LRRNQRPSSLYRQYAS  4931

Range 8: 4966 to 5016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/17(100%) 0/17(0%) Plus/Minus
Query      188  LNTTGIRPPCSSRLFSI  238
                LNTTGIRPPCSSRLFSI
Subject   4966  LNTTGIRPPCSSRLFSI  5016

Range 9: 5099 to 5149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 14/17(82%) 0/17(0%) Plus/Minus
Query       55  YTLSISGLTTTGRSFTT  105
                YTL+ISGLTTTGRS  T
Subject   5099  YTLAISGLTTTGRSVAT  5149

Nucleotide Sequence (909 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
91
182
273
364
455
546
637
728
819
909

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
566.0 2224.1 39% 1.725e-160 50% NC_016509

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 12

Range 1: 13965 to 14867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
566.0 bits(1229) 0.0 237/301(79%) 0/301(0%) Plus/Plus
Query        3  VM*RARF*GTLANSKCNIEQR*LTMATALVAPIVGDKGECLALLRNLPNDESPDSWLPNAGRMNDDFFRVGEAYRLQNLSIGYTINVSVAIKSLPKETMGVLRVVIEPRDGDIVIHTIRFYRDKNLIEQIYTQRKGGVSGVLKSRPVDASIVNFHSERNEKMTSIVNKQTRLMEVQTNGSSLGTSQVKVPVDSLITVLVSLESKKMSCDKLFELIPTEVGSIIKFDGTVDYKEIVRVRKYIFPYKTFRDSKYWELLNEAIAARNETAATQPETEVTPAHPTADVIYVTPPEGVTITNTATP  905
                VM*+A++* T  +S+C   + *L M TALVAPIVGDKGE L+LLRNLPND S +SWLPNAGRMNDDFF++GEAY+LQNLSIGYTINVSV+IKS+PKETMGVLRV+IEPRDGD++IHT+RFYRDKNLIEQ+YTQRKGGV  VLKSRPVD+SIVNFH+ER E MTS+VNKQ RLMEV TNGSSLG+SQ+KVPVDSLITV+VSLESKK+SCD L EL+P +VGSI+KFDGTVDYKEI R RKYIFPYKTFRDSKY E+L EAIAARNETAA QPETE  P HP A+V YVTPPEGV+ITN A P
Subject  13965  VM*QAQY*ETPVSSRCRFRKL*LIMTTALVAPIVGDKGEYLSLLRNLPNDNSQESWLPNAGRMNDDFFKIGEAYKLQNLSIGYTINVSVSIKSIPKETMGVLRVIIEPRDGDMLIHTLRFYRDKNLIEQVYTQRKGGVGSVLKSRPVDSSIVNFHNERKETMTSMVNKQNRLMEVFTNGSSLGSSQIKVPVDSLITVIVSLESKKVSCDGLSELVPNDVGSIVKFDGTVDYKEINRERKYIFPYKTFRDSKYREILTEAIAARNETAAAQPETETVPVHPIANVTYVTPPEGVSITNAAIP  14867

Range 2: 13964 to 14866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
463.4 bits(1005) 0.0 227/301(75%) 0/301(0%) Minus/Minus
Query        2  GVAVLVIVTPSGGVT*ITSAVGCAGVTSVSGCVAAVSFRAAIASFNNSQYFESLKVLYGKMYFRTRTISL*STVPSNFIIEPTSVGINSKSLSHDIFFDSNDTKTVIKLSTGTLTWLVPKLEPFVCTSINLVCLFTIEVIFSFLSL*KFTIDASXXXXXXXXXXXXXX*V*ICSIKFLSR*NLIVCMTMSPSRGSITTLSTPIVSLGSDLIATDTLIV*PIERFCNLYASPTLKKSSFIRPALGSQESGDSSFGKFLNKAKHSPLSPTIGATNAVAIVNHRCSILHFEFASVPQNRARHIT  904
                G+A  VI TPSGGVT*+T A+GC G  SVSG  AAVSFRAAIAS   S+YFESL VLYGK+YFR+R ISL*STVPSNF IEPTS G NS+S SH+ FFDSN+T TVIKLSTGTL WL PKLEPFV TSINL CL TIEVI SFLSL*KFTID STGLLL T  TPPFL V* CSIKFLSR*NL VC+++SPSRGSI TLSTPIVS G DLI TDTLIV PIERFCNLYASP LKKSSFIRPALGSQ+S + SFGKFL+K K+SPLSPTIGATNAV I+NH    LH E   V    A +IT
Subject  13964  GIAAFVIDTPSGGVT*VTFAIGCTGTVSVSG*AAAVSFRAAIASVKISRYFESLNVLYGKIYFRSRFISL*STVPSNFTIEPTSFGTNSESPSHETFFDSNETITVIKLSTGTLIWLDPKLEPFVKTSINLFCLLTIEVIVSFLSL*KFTIDESTGLLLRTLPTPPFLCV*TCSIKFLSR*NLRVCISISPSRGSIITLSTPIVSFGIDLIETDTLIVYPIERFCNLYASPILKKSSFIRPALGSQDSWELSFGKFLSKDKYSPLSPTIGATNAVVIINHSFLNLHLELTGVS*Y*ACYIT  14866

Range 3: 13965 to 14759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.5 bits(643) 0.0 155/265(58%) 0/265(0%) Minus/Minus
Query        3  FISCGDRFI*XXXXXXXXXXXIRKNVLSHANYFLIINSPVKLYYRTYFSWYQFEEFIT*HFLRF*RY*DSNQTVNRDFDLASS*ARAIRLYFH*PGLLVHYRSHFFISFTVKIHN*RIHRSTFEYTADASFSLSVDLFY*ILVTIESYSVYDDVTVSWLYYYSKHAHRFFGK*FNRDGYINCVTYRKIL*PIRFSHSEEIVIHSTSVREPRIGGFVIR*VSQ*SQTLPLISNNRSH*RCCHC*SPLFNITL*VR*CXXXXXXSHY  797
                F+SC +RF * LP+  I K LIRK++L  A YFL+I+  V+ + R +   YQF E I *+FL  *R  +S+QTV+ DFDLA S* RAIR  FH*P LL+++  H F SF +KI++*RIHRSTFE T DA+FSL VDLF *+LVTIES SVY  +TV W YYYSKHAHRFF   FNR+ YIN V YRKIL* IR S+ +EI+IH T VREPR  G +IR VSQ* Q L  I N RSH*R CH *S L   T *   C    S  HY
Subject  13965  FVSCSNRFG*DLPVFRIPKRLIRKDILPFAIYFLVIDRSVEFHNRAHVVRYQFGESIA*NFL*L*RNYNSDQTVDWDFDLARS*TRAIRKDFH*PILLINH*GHSFFSFIMKIYD*RIHRSTFENTTDATFSLRVDLFN*VLVTIES*SVYKHITVPWFYYYSKHAHRFFWDRFNRNRYINRVPYRKIL*LIRLSYFKEIIIHPTRVREPRFLGIIIRQVSQ*RQILAFIPNYRSH*RRCHY*SQLSKSTP*AHWCFLVLSLLHY  14759

Range 4: 14811 to 14867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 10/19(53%) 0/19(0%) Minus/Minus
Query      849  RGSCVSYSHTLWWCHIDYV  905
                R SC+ Y +TLWW +I +V
Subject  14811  RDSCICYRYTLWWSYIGHV  14867

Range 5: 14317 to 14868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.2 bits(400) 0.0 101/184(55%) 0/184(0%) Minus/Minus
Query      355  KG*LC*L*SHPLVVSHRLRPPSDAPV*LLFQAASRRFHFVRRSLHLITPNTLNL*KSYTEKCTFARELFPYNQQSRQTLLSNLLQLVSIRRVYHMTFSSILTILRQ*SNCQQGL*LG*FLS*SHSFVLPLTWSACSLSKSFFHFFHCENSQLTHPPVYF*VHR*RLLFFECRFVLLNSCHDRIL  906
                +G*L  L  HPLV  HR R  SDAP   LFQA    F FV++SL L +P   N * SYTE+ T  R+LFP N+  R+   S+  + V IRRV+ M  S  LT L Q*SNC+ GL* G  L+*SHS  LPLT+SA    +S F FFH EN +LT+PPVYF* H  R LFF CR V L+SCHDRIL
Subject  14317  QG*LHLLSIHPLVELHRSRSRSDAPELSLFQAEPPLFRFVQQSLRLRSPGISNP*TSYTERYTSVRDLFPCNRPFRRISQSSPRRSVPIRRVHRMKLSLTLTKL*Q*SNCRLGL*FGSILN*SHS*RLPLTYSAY*PLRS*FLFFHYENLRLTNPPVYF*EHYRRHLFFACRPVQLSSCHDRIL  14868

Range 6: 14083 to 14265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 41/61(67%) 0/61(0%) Minus/Minus
Query      121  RPSFLWEVI*SRRIH*LCNLSKDFVTYTLLPL*RNRHSFDQR*GAKNRGIRHSVSFSIKPN  303
                RPSFL   I*S++IH* C LSKDFVTYT L  *RN HS D R*GAK  G  HS SFS+K N
Subject  14083  RPSFLLGSI*SKQIH*SCTLSKDFVTYTPLLF*RNHHSSDPR*GAKILGNYHSASFSVKTN  14265

Range 7: 13963 to 14031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 19/23(83%) 0/23(0%) Minus/Minus
Query        1  ITAVQYYTLSSLVFLRTELVTLL  69
                ITA   YTLSSLVFL TELVTLL
Subject  13963  ITAF*IYTLSSLVFLSTELVTLL  14031

Range 8: 13964 to 14263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 72/100(72%) 0/100(0%) Plus/Plus
Query        2  SNVTSSVLRNTSELKV*Y*TAVINNGNSVSGSYCWR*GGVFGFIEKLTE*RIPRFLAP*RWSNE*RFLQSGRSV*VTKSFDRLHN*CIRRD*ITSQRNDG  301
                SNVTSSVLRNTSELKV* * AVINN N VSGSY W *  VF F EKL E*  PR LAP*R S+E* FL + R V*VTKSFDR+H+*CI  D*I  +RNDG
Subject  13964  SNVTSSVLRNTSELKV*I*KAVINNDNGVSGSYSWG*RRVFVFTEKLAE**FPRILAP*RGSDE**FL*NRRGV*VTKSFDRVHD*CICFD*IDPKRNDG  14263

Range 9: 14402 to 14866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 77/155(50%) 0/155(0%) Plus/Plus
Query      440  GGCVNCEFSQ*KK*KNDFDSEQADQVNGSTNEWL*LRN*PSQSPC*QFDYCLSIVRIEENVM**TLRIDTN*SRFDNKV*RDC*L*GNSSRAKVHFSV*DF*RFKVLGVIK*SDRRTK*NRRDAA*NRSYTGASDGGRNLCDTTRGCDYN*HSYP  904
                GG VN +FS *KK   D +   A+ VNGS  EWL* R  P+QSP  QFD+C S VR++E+ M  TLRI T     D ++ R+  L GN SR +V+ SV*D * F++ G +  SD  TK N   +A*NR  +GASD  R+LC++TRGC  N  SYP
Subject  14402  GGFVNRKFS**KKRNYDLNG**AE*VNGSLYEWL*FRIEPNQSPSRQFDHCYSFVRVKESFMRWTLRIGTERRGLDCEIRRNGRLQGNKSRTEVYLSV*DV*GFEIPGDLNRSDCCTKRNSGGSA*NRDSSGASDRERDLCNSTRGCIDNKCSYP  14866

Range 10: 14312 to 14362 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 12/17(71%) 0/17(0%) Plus/Plus
Query      350  HYKILS*QEFNRTNLHS  400
                H KILS*QE N T LH+
Subject  14312  HSKILS*QELN*TGLHA  14362

Range 11: 14071 to 14499 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 93/143(65%) 0/143(0%) Plus/Plus
Query      109  IRGSVWLY*ETYRMTNPPILGSLTLVE*MTISSEWEKRIGYKIFR*VTQLMYPSRLNHFPKKRWACLE***SHETVTSSYTL*DSIVTRI**NKSTLKEKEASAVYSKVDRWMRQL*IFTVKEMKK*LR**TSRPG*WKYKRM  537
                I+ S+ LY*ET RM  P  LGSLT V *M IS + E+RI YKIFR* T+LMY  RLN   KKRWACLE***+H TV   YTL*DSIVTR * N+ST KEK AS V+SKVDRW+RQ *IF +KE K * +   SR G*WK  RM
Subject  14071  IKASICLY*ETCRMIIPKNLGSLTRVG*MMISLK*ERRISYKIFR*GTRLMYLFRLNRSQKKRWACLE***NHGTVICLYTL*DSIVTRT*LNRSTRKEKVASVVFSKVDRWIRQS*IFIMKEKKL*PQWLISRIG*WKSLRM  14499

Range 12: 14560 to 14868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 51/103(50%) 0/103(0%) Plus/Plus
Query      598  YR*NRRKCHVINSSN*YQLK*VR**SLTGLLIIRK*FACESTFFRIRLLEIQSIGSY*MKRSPHEMKPPRRSLKQKLHXXXXXXT*SM*HHQRV*L*LTQLPL  906
                +R*++RK H ++S N Y+    R *+ T   I RK* A  S  FRIR L I++ G  * KR  HE K  R SLKQ+  R IR RT* M* HQRV  *  QL L
Subject  14560  FR*SQRKFHAMDSPNWYRTTWARL*NSTERSITRK*IANGSISFRIRRLGIRNTGRS*PKRLLHETKQRRLSLKQRQFRCIRSRT*PM*LHQRVYR*QMQLSL  14868

Nucleotide Sequence (430 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
430

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
260.0 1170.4 30% 8.983e-69 63% NC_016509
154.1 247.9 25% 6.551e-37 31% NC_004667
111.5 157.5 40% 4.408e-24 37% NC_005065
147.7 243.8 35% 5.59e-35 55% NC_029783
158.7 240.6 38% 2.735e-38 42% NC_022072

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 7

Range 1: 8295 to 8696 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 125/134(93%) 0/134(0%) Minus/Plus
Query        2  VFGFQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCYXXXXXXXXXXXXXLEREPNEDL  403
                V  F  GEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSK EL I+DRILEESFGFDLKL+CQC PYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL
Subject   8295  VDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDL  8696

Range 2: 8276 to 8479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 56/68(82%) 0/68(0%) Plus/Minus
Query      219  QTTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP  422
                QTTTKDGSEPFKDIAN VI T VFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP  K +T ++ +P
Subject   8276  QTTTKDGSEPFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTP  8479

Range 3: 8564 to 8695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 38/44(86%) 0/44(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*GVHWHDN  134
                +SSLGSLS+L+FKNNLNGSG+K*Q*SGVLTKYFEQK*G HWH N
Subject   8564  KSSLGSLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVN  8695

Range 4: 8333 to 8692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 79/120(66%) 0/120(0%) Minus/Plus
Query        6  YNGKE*ARFVGGGAAEIWRCEHMVREHVGANDVVGDIFERFGTILSRGLWR*LFDFFKGRAAYQ*QDS*REFWFRSQIVMPVHPLLLFEVFGEDAGSLLFSPRSI*VVLEVKPGKRTQ*R  365
                ++G+E ARFVG GAAEIWRC+++VREH G+ D VGDIFERFGT+    LWR*LFDFF+ RAA +* DS*REFW R Q+ +PV  L LFE+FGED GSLLF    +*VV E K GKR Q*R
Subject   8333  HDGEERARFVGRGAAEIWRCKYVVREHFGSYDFVGDIFERFGTVFGCCLWR*LFDFFEERAADR**DS*REFWVRPQVNVPVCSLFLFEIFGEDTGSLLFFT*PV*VVFEAKLGKRAQ*R  8692

Range 5: 8335 to 8697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 83/121(69%) 0/121(0%) Minus/Plus
Query        1  QWERMSSFCRWGRSGDLEVRTHG*GTRWC**RCWRYL*KVRNHP*SWFVAMTL*FFQRKSCLSMTGFLKRVLVSISNCHASAPLTFVRSIW*GRRITVIFSQIHLSCS*S*AWKENPMKIC  363
                +W R SSFCR GRSGDLEV+  G*GT W  * CWRYL*KVRN     FVAMTL*FF+R SC  M GFLKRVL S S+  AS  L FVR+IW*G RI VIF    LSC *S*AWKE+PMKIC
Subject   8335  RWGRTSSFCR*GRSGDLEVQIRG*GTLWFL*LCWRYL*KVRNRLWLLFVAMTL*FFRRTSCR*MIGFLKRVLGSTSS*RASVLLIFVRNIW*GHRIIVIFYLTRLSCF*S*AWKESPMKIC  8697

Range 6: 8317 to 8694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 79/126(63%) 0/126(0%) Plus/Minus
Query        4  DLHWVLFPGLTSRTT*MDLGENNSDPASSPNTSNKSKGCTGMTI*DRNQNSLQESCH**AALPLKKSKSHRHKPRLRMVPNLSKISPTTSLAPTCSLTMCSHLQISAAPPPTKRAHSFPL*LQSRT  381
                +LHW LFP L S+TT*    +NN+DP SSPN SNK+K  TG   * R QNSLQES H  AA   KKSKSHRHK + + VPNLSKISPT S  P CSLT   HLQISAAP PTKRA S P * ++ T
Subject   8317  NLHWALFPSLASKTT*TGQVKNNNDPVSSPNISNKNKEHTGTLT*GRTQNSLQESYHLSAARSSKKSKSHRHKQQPKTVPNLSKISPTKS*EPKCSLTTYLHLQISAAPLPTKRARSSPS*PRNHT  8694

Range 7: 8316 to 8696 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 84/127(66%) 0/127(0%) Plus/Minus
Query        2  QIFIGFSFQA*LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD*GWFRTFXXXXXXXXXXXXVP*PCVRTSRSPLRPHRQNELILSHCNYRVVL  382
                QIFIG SFQA*LQ+QLK +  KIT+IR PHQI RTK+R  LA   E+E KTLFKNP+I  QL L KNQRVIATN++   FRTFQRYRQQ H +Q VP*P + TSRSPLRP+RQNEL+L H ++ ++L
Subject   8316  QIFIGLSFQA*LQKQLKRVR*KITMIRCPHQIFRTKIRSTLAR*LEVEPKTLFKNPIIYLQLVLRKNQRVIATNNNQRRFRTFQRYRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIIL  8696

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 3

Range 1: 7780 to 8106 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 65/109(60%) 0/109(0%) Minus/Plus
Query       68  FQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCY  394
                F  GEYDSVV     ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS++ L I+  +L ++FGFD+K+  Q  PYFCSK+LV+  D  +
Subject   7780  FFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLF  8106

Range 2: 7752 to 7934 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 27/61(44%) 0/61(0%) Plus/Minus
Query      240  SEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSP  422
                S P     N V  T +FPNHV APP     PTD T+SF  ++TT SYSP  K +  +  +P
Subject   7752  SNPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTP  7934

Range 3: 7945 to 8139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 20/65(31%) 0/65(0%) Plus/Minus
Query       35  LQEQLKWIWEKITVIRRPHQILRTKVRGALA*QFEIETKTLFKNPVIDKQLFL*KNQRVIATNHD  229
                L E+ KWI  K   I   +  LRTK+  +L     ++TK + +N  I+ Q    K + +I  N++
Subject   7945  LNEEFKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLPTKYKAIITANYN  8139

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 6388 to 6708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 48/107(45%) 0/107(0%) Minus/Plus
Query       68  SGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPDHCY  388
                S EY+SV +     L +SV AQRR+GG+NTWLGNT+V M LLA        + V   GDDSL+ S++ +  +   L    GFD+K +   TPYFCSKY++ T D  +
Subject   6388  SSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGNTIVNMVLLAYVKNFDPNTFVCFSGDDSLVLSRDPIYFDFFKLSLELGFDVKFTPVATPYFCSKYIINTEDRIF  6708

Range 2: 6348 to 6548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 25/67(37%) 0/67(0%) Plus/Minus
Query      228  TKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPL*KPNTPNTFSPDR  428
                TK     F   A+N + T V PNHVF PP L CA T+       ++ T SYS L      ++ +P R
Subject   6348  TKVFGSKFLT*ASNTMFTIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKR  6548

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 8593 to 8910 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 63/106(59%) 0/106(0%) Minus/Plus
Query       77  FQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRTPD  394
                F SGEYDS V+M   EL LS+G+QRRSGGANTWLGNT+VL++LL+I L      LV+  GDDSLIFSKE+L ++   L +++GFD+KL+    PYFCSKY V+T D
Subject   8593  FFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGNTMVLLSLLSILLNKRPFDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTND  8910

Range 2: 8601 to 8735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 26/45(58%) 0/45(0%) Plus/Minus
Query      252  KDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP  386
                + I N+   T VFPNHVFAPP LR  P DK +S   I T ESYSP
Subject   8601  RSIDNSDNKTIVFPNHVFAPPLLR*LPIDKDNSLLCIETLESYSP  8735

Range 3: 8871 to 8984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 21/38(55%) 0/38(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*G  116
                ++SL S     F  +LNGSG K + S V TKYFEQK*G
Subject   8871  KASLSSRR*PAFIKSLNGSGTKRKPSFVFTKYFEQK*G  8984

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 8844 to 9155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.7 bits(340) 0.0 67/104(64%) 0/104(0%) Minus/Plus
Query       83  FQSGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKEELLINDRILEESFGFDLKLSCQCTPYFCSKYLVRT  394
                F  GEYDS+V++   ELVLSVG+QRRSGGANTWLGNT+VL TLL++ L+G+E   VVV GDDSLIFS+ EL I+   L ++FGFD+KL  Q  PYFCSK+LV+T
Subject   8844  FFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQT  9155

Range 2: 8852 to 9016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 29/55(53%) 0/55(0%) Plus/Minus
Query      222  TTTKDGSEPFKDIANNVISTNVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSP  386
                TTT   S P     N V ST VFPN VFAPP     PTDKT+S     T  SYSP
Subject   8852  TTT**SSFPLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSP  9016

Range 3: 9122 to 9235 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 16/38(42%) 0/38(0%) Plus/Minus
Query        3  RSSLGSLSRLNFKNNLNGSGRK*Q*SGVLTKYFEQK*G  116
                +S   +L   N  N   GSG K     V T+ FEQK*G
Subject   9122  KSKSATLETPNLINIFRGSGTKNSPLSVCTRNFEQK*G  9235

Nucleotide Sequence (325 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
325

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
98.5 98.5 32% 2.357e-20 43% NC_004667
221.9 1121.2 27% 1.639e-57 80% NC_016509
98.5 154.1 24% 2.357e-20 42% NC_022072
99.4 124.7 26% 1.938e-22 54% NC_029783
48.6 48.6 21% 2.361e-05 36% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 1

Range 1: 5832 to 6146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.5 bits(209) 0.0 45/105(43%) 0/105(0%) Plus/Plus
Query        1  GQNVLGVFGYVAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVN  315
                G N+      + FHDA+NL G +++A+  +VGE  KS      N+PPGGGKTT LVDE+          TAN GS+ DIN A++ R+   E    A T NS +VN
Subject   5832  GDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVN  6146

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 6371 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.9 bits(479) 0.0 94/98(96%) 0/98(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVNSRP  324
                + FHDAMNLRGCVRLAKRALVGEYMK+VRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE DLVAKTANSWIVNSRP
Subject   6371  LVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRP  6664

Range 2: 6382 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 91/94(97%) 0/94(0%) Minus/Minus
Query       42  GRELTIHEFAVFATKSTSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS  323
                GRELTIHEFAVFATKS SFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLT FMYSPT ALLANLTHPRKFIAS
Subject   6382  GRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIAS  6663

Range 3: 6373 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.9 bits(443) 0.0 86/97(89%) 0/97(0%) Plus/Plus
Query       33  SVS*CDEFAWMR*VS*EGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFRKEEACEDCYSEHRKRCGY*LGYSSQRREEGGRFGSEDRELVDC*FSA  323
                SVS*CDEFAWM *V *EG GR IHEECEVVRGEFTTWWRQD+ASR*R+F KEEACEDCYSEH KRC Y*LGYSSQRREEG RFGSEDRELVDC*F A
Subject   6373  SVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*FPA  6663

Range 4: 6377 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 84/96(88%) 0/96(0%) Minus/Minus
Query       37  GPRINNPRVRGLRYQIDLLLPFSGSNSRVNIRSASCVRCSNLRTLLPSEILVNETRCLASTRW*IHRGQPHTLHVFSDQSPLS*PNASTQIHRIMK  324
                GP INNPRVRGLRYQI LLLPFSGSNSRVNI SAS VRCSNLRTLLPS+I VNETR LASTRW*IHRGQPH LHVF+DQ PLS PN STQIHRIMK
Subject   6377  GPGINNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMK  6664

Range 5: 6351 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 68/85(80%) 0/85(0%) Plus/Plus
Query       11  CWVCLVT*RFMMR*ICVDALG*LRGLWSENT*RV*GCPR*IHHLVEARQRVSLTSISEGRSVRRLLQRTQEALRILTRLFEPEKG  265
                C   ++ * FMMR*ICVD LG LRG WS NT*R+*GCPR*IHHLVEAR+RVSLT+I EGRSVRRLLQRT EAL+ILTRLFEPEKG
Subject   6351  C*FVMIY*CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEKG  6605

Range 6: 6372 to 6575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 59/68(87%) 0/68(0%) Minus/Minus
Query       32  YPQRFLCSL*QSSHASSFRNTRQRDALSCLHQVVNSPRTTSHSSCILRPKPS*LT*RIHANSSHHETL  235
                Y QRF CSL*QSSHASSF+N RQRDA SCLHQVVNSPRTTSHSSCI RP PS* T* IHANSSHHETL
Subject   6372  YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL  6575

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 6926 to 7210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.5 bits(209) 0.0 40/95(42%) 0/95(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKEVDLVAKTANSWIVN  315
                + FHDA+N  GC+++A+  LVG+  KS   + VN+PPGGGKTT +V+++  + +   + TAN GSA DIN  +  +  +  +D  A T NS +VN
Subject   6926  LVFHDALNFCGCLKIARLGLVGKEFKSFNYTCVNAPPGGGKTTMMVEKFLEQPRTTTMVTANLGSADDINKKLDKKLEELGLDRAATTINSKVVN  7210

Range 2: 6937 to 7134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 32/66(48%) 0/66(0%) Minus/Minus
Query       42  LISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALLANLTHPRKFIAS  239
                L+S+ALP  AV I       K  ST  VV PPPGG  T   L L    PTK  LA   HP+KF AS
Subject   6937  LMSSALPKLAVTIVVVRGCSKNFSTIIVVFPPPGGALTQV*LKLLNSLPTKPSLAIFKHPQKFKAS  7134

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 6660 to 6887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.4 bits(211) 0.0 41/76(54%) 0/76(0%) Plus/Plus
Query       31  VAFHDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAR  258
                V FHDA+NL+  + LA+ +L+G+   S+++  VNSPPGGGKTTRL D +  RK    IATAN GSA DIN  I  R
Subject   6660  VPFHDALNLKAVISLARTSLIGKNFSSIKMKYVNSPPGGGKTTRLCDTFMKRKDGVVIATANVGSAEDINKEIAKR  6887

Range 2: 6930 to 6959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.3 bits(49) 0.0 8/10(80%) 0/10(0%) Plus/Plus
Query      286  AKTANSWIVN  315
                A+TANSWI+N
Subject   6930  ARTANSWIIN  6959

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 4494 to 4694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.6 bits(100) 0.0 24/67(36%) 0/67(0%) Plus/Plus
Query       55  LRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRA  255
                L  C++L K     E   S  +   ++PPGGGKTT ++  +     R  I TAN  S+ DIN  + A
Subject   4494  LANCMKLGKFYDFEERFSSSVVVLEDTPPGGGKTTNMLTRFRSNPYRTCILTANLESSLDINKQLNA  4694

Nucleotide Sequence (489 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
489

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
376.8 1729.7 29% 7.232e-104 72% NC_016509
77.6 110.3 33% 6.672e-18 21% NC_004667
78.0 78.0 17% 6.148e-14 41% NC_022072
80.8 117.6 28% 4.531e-20 34% NC_029783

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 5897 to 6382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
376.8 bits(816) 0.0 157/162(97%) 0/162(0%) Plus/Plus
Query        2  VRQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                VRQS SK+TIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLK AGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFK VANAPEDGTTIFDLEYVFLVSTGTFVPGRNL+AVLSRQDAVLVCDDLLVFH
Subject   5897  VRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRVGHKFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFH  6382

Range 2: 5896 to 6375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.0 bits(740) 0.0 147/160(92%) 0/160(0%) Minus/Minus
Query        1  TSRSSQTSTASCLESTACKFLPGTKVPVDTKKTYSRSKIVVPSSGAFATALKFASYTRNPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYMINSIAGASVPAAFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVVFDTLCRT  480
                TSRSSQTSTASCL++TA +F PGTKVPVDTKKTYS+SKIVVPSSGAFAT LKFASYTR PGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKY++NSIAGASVPA FRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIV FD LCRT
Subject   5896  TSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPSSGAFATTLKFASYTRKPGRFS*TASGNLCPTLLSVLATRSRARFSLMNKSKHRRAKYIMNSIAGASVPAVFRSLQYTTSLKDCIPKTGSSPNTQLSLSIHPISTAVPIVDFDALCRT  6375

Range 3: 5897 to 6382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 117/162(72%) 0/162(0%) Minus/Minus
Query        2  MEN**IIAD*HCVLSRKYGL*IPPWHKSTCGHQKDILEVKDSCPVFRCIRYRLEIRVIHT*PWEILVNCKRKLVSYSLVRFSNEISRPLQLDEQIETSPC*IHDKLNCRGLSTRGLQIFAVYDIIEGLYPQDWVLTQHPTVLINTPHLHSCADSSL*HALPN  487
                M++**II +*H +L R+Y L I PWH+S CG+QKD+ +++DS PVFR I    EIRV+H+*  +ILVNC+RKLVSYS VRFSN+ISR LQLDEQIETSPC*IH++LN RG STRGLQIFAVYDIIEGLYPQDWV T +PTVL++TPHLHSCADS L* ALPN
Subject   5897  MKH**IITN*HGILPRQYCLEISPWHESACGYQKDVFQIEDSRPVFRRICNHFEIRVVHS*TRKILVNCERKLVSYSFVRFSNKISRSLQLDEQIETSPC*IHNELNRRGFSTRGLQIFAVYDIIEGLYPQDWVFT*YPTVLVDTPHLHSCADSRL*RALPN  6382

Range 4: 5898 to 6383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.7 bits(543) 0.0 116/162(72%) 0/162(0%) Plus/Plus
Query        3  FGKACQRLLSAQLWRWGVLIRTVGCWVRTQSWGYNPSMMSYTAKI*RPRVLRPRQLSLSCI*HGDVSICSSS*SGREISLLKRTRE*DTSFRLQFTRISQGYVCMTRISRR*RMHRKTGQLSLTSSMSFWCPQVLLCQGGIYKPYFRDKTQC*SAMIY*FSM  488
                FGKA Q LLSAQLWRWGV  RTVG  V+TQSWGYNPSMMSYTAKI*RPRVL+PR+LS  CI*HGDVSICSSS*S REI LLKRT+E*DTSFR QFTRI   Y C TRIS+  +M RKTG+LS   + SFW PQ L CQG I + Y R K  C*  MIY*  M
Subject   5898  FGKARQSLLSAQLWRWGVSTRTVGY*VKTQSWGYNPSMMSYTAKI*RPRVLKPRRLSSLCI*HGDVSICSSS*SEREILLLKRTKE*DTSFRSQFTRIFLVYECTTRISKWLQMRRKTGRLSSIWNTSFWYPQALSCQGEISRQYCRGKMPC*FVMIY*CFM  6383

Range 5: 5898 to 6383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.4 bits(538) 0.0 116/162(72%) 0/162(0%) Minus/Minus
Query        3  HGKLVDHRRLALRLVSKVRLVNSSLAQKYLWTPKRHTRGQR*LSRLPVHSLPP*NSRHTHVTLGDSRKLQAETCVLLSCPF*QRDLAPASA**TNRNIAVLNT**TQLPGPQYPRPSDLCSIRHH*RIVSPRLGPHPTPNCPYQYTPSPQLCR**SLTRFAE  488
                H  LVDH +LA  L S +   + +LA+K LW PKR    +R* SRLP H  P *NSR T V   DSRKL+AETCVLL CPF*Q+DLA ASA**TNRNIAVLNT**TQ PG QYPR SDLCSIRHH*RIVSPRLG H  PNCP +YTPSPQLCR**+LTRFAE
Subject   5898  HETLVDHHKLARHLASTILPRDFALARKCLWIPKRRIPNRR*SSRLPAHLQPL*NSRRTLVNQEDSRKLRAETCVLLFCPF*QQDLALASA**TNRNIAVLNT**TQSPGLQYPRSSDLCSIRHH*RIVSPRLGLHLIPNCPCRYTPSPQLCR**TLTRFAE  6383

Range 6: 5899 to 6312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 105/138(76%) 0/138(0%) Plus/Plus
Query        4  SAKRVKDYYRHSCGDGVY**GQLGVG*GPSLGDTILQ*CRILQRSEGRGY*GPGN*VYHVFSTAMFRFVHQAEAGARSRC*NGQESRTQVSACSLRESPRVTCV*REFQGGSECTGRRDNYL*PRVCLFGVHRYFCAR  417
                SAKRVK YYRHSCGDGVY  GQLG+ * PSLGDTILQ*CRILQRSE RGY* PG+*V++VFSTAMFRFVHQAEA ARS C*NGQ+SRTQVSA SLRES   T V REFQ G +C GRRD+YL   + LFG+HR+F AR
Subject   5899  SAKRVKVYYRHSCGDGVYRQGQLGIR*RPSLGDTILQ*CRILQRSEDRGY*SPGD*VHYVFSTAMFRFVHQAEASARSCC*NGQKSRTQVSARSLRESSWFTSVRREFQSGCKCAGRRDDYLRFGIRLFGIHRHFRAR  6312

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 2

Range 1: 5655 to 5873 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 30/73(41%) 0/73(0%) Plus/Plus
Query      269  KFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                K P  VYE+LPG  VY +    + ++ +DG  + DL YV +   G F  G+++ AV++  D + VCDD+LVFH
Subject   5655  KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVLIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFH  5873

Range 2: 5394 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 18/86(21%) 0/86(0%) Plus/Plus
Query        5  RQSVSKTTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV  262
                R+   ++T     E   + K  W+  ++PV+ ++     +  + +K   +E   +E++ YLA      +  L  AR++   T + V
Subject   5394  REVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV  5651

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 6689 to 6937 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 34/83(41%) 0/83(0%) Plus/Plus
Query      239  VAKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                +A  D +   KFP   YE LPGLR Y  + + V +  EDG  + D+ YVFL+  G F  G++L   +   +  L+CD LLVFH
Subject   6689  IAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPYVFLMEKGIFCKGQSLCGGMHGDETALLCDSLLVFH  6937

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 6426 to 6671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 35/82(43%) 0/82(0%) Plus/Plus
Query      242  AKTDKRVGHKFPLAVYENLPGLRVYDANFKAVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLQAVLSRQDAVLVCDDLLVFH  487
                AK D  VG KFP +  ++ PGLR +    K +    E  +TI+DL+YVF VS   F+ GR++  + +  D  LVCDDL+ FH
Subject   6426  AKLDNVVGDKFPKSYLDSTPGLREHSMLNKNLYVVSESVSTIYDLDYVFSVSRNRFIRGRDINVLCTNNDKFLVCDDLVPFH  6671

Range 2: 6258 to 6416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 18/53(34%) 0/53(0%) Plus/Plus
Query       71  WVLGEDPVLGIQSFNDVVYCKDLKAAGTEAPAIEFIMYLARRCFDLFIKLKRA  229
                W+   DP L I   +      +L     EA +IE+I+YLA R ++L+  L  A
Subject   6258  WMYDPDPALCIDVSSQCPVTPNLTNTLEEAASIEYILYLAYRVYNLYRSLSAA  6416

Nucleotide Sequence (646 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
65
130
195
260
325
390
455
520
585
646

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
303.5 857.9 49% 1.228e-81 38% NC_016509

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 7

Range 1: 3989 to 4603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.5 bits(656) 0.0 127/205(62%) 0/205(0%) Plus/Plus
Query        9  NKSSMLALGGGLVLIASIIAFRRQVFIKAQGFVRKVRSSVAFSKEKVVLGLGNMKKSFGESKRKAIKCTQGSVQTMKALAEAEMSERVAAFSGEIGYIYGDSLNVQTVCLTASAYLSSCYEKSAILLLLTPKRFRYIGSVGYGVAALKCLRDQEKVRALKLFGIAVALALTGKKGVSRAANLQILFPKRGDVYEGVTNFYRQQLQ  623
                +KSS+L  GGGL+L+AS++AFRRQ+  +A G  + VR+S+  +K K+VLGL ++K+  G  +R A+   QGSV+++K +A AE  +RV+ +  E+GYIYGDSLNVQTVCLTA+AYLSS YEKSAIL+LL PKRFRYIGSVGYG+AAL+C++  E  RA KL G+A  LALT KKG SRAA+LQI+FPKRGDVYEGVT+FYRQ+ +
Subject   3989  SKSSLLMFGGGLLLMASMLAFRRQILNRAHGLAQGVRTSLKKTKGKLVLGLSDLKERLGSVRRNAVVSAQGSVRSLKVVARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASLQIVFPKRGDVYEGVTSFYRQRAE  4603

Range 2: 3985 to 4593 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.5 bits(525) 0.0 120/203(59%) 0/203(0%) Minus/Minus
Query        5  CR*KLVTPSYTSPRFGNKICRLAALLTPFFPVSAKATAIPNNFNALTFSWSLRHFKAATP*PTLPMYLNRFGVKRRRIADFS*HDDK*ALAVRHTV*TFSESP*MYPISPEKAATRSLISASASAFIVCTDP*VHLIAFLFDSPKLFFILPKPNTTFSLENATEERTLRTNP*AFIKTCLRNAMIEAISTRPPPKANIDDLFQ  613
                C *KLVTPSYTSPRFGN IC+LAALL PFF V+AK  A P NF AL +S  L H  AA P PTLP+YLNR G    RIADFS* DD+ A AVRHTV*TF+ESP*MYPIS     TRSL SA A+ F   TDP*    AFL   P L F   +PNT+       E RT   NP*A  K   R A +EAIS RPPP  + DDL +
Subject   3985  CL*KLVTPSYTSPRFGNTICKLAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALATTFNERTDP*AETTAFLLTLPSLSFKSLRPNTSLPFVFFKEVRTPCANP*ALFKIWRRKASMEAISNRPPPNISNDDLLR  4593

Range 3: 3986 to 4594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 78/203(38%) 0/203(0%) Minus/Minus
Query        6  LPIKIGHTFIHIPTLREQNLQVGGSANTFLSCQRQGYRYTKQLQRPDFLLVPETFQSRYTITNTPNVPKPLWR*EKKDSGFLVARRQISACCKTHCLNVQRIPVDVPDFTRKSRNTLTHLGLGERLHSLHRSLSTFDRFPL*LPETLLHIAQT*HDFLLRKCHRRTDFTHKPLSLYKNLPSERNDRSYQYKTSA*G*H*RFIP  614
                LP++  +  IH+PTLRE NLQ G    TFL  QRQ   Y  Q + P  L   +T Q RY +++ P +P+PL R   K+  FL+AR  I    K H LNVQR+ V+VP     SR+ +        L   H SLS  D  P   PE+L  +AQT*H    R      D    P+S  +NL  +    S+Q  TS   *  R  P
Subject   3986  LPVEASNALIHVPTLREHNLQAGCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPRYHLQ*TH*SLSRNDGIPSYTPESLFQVAQT*HQLTFRLFQGGADTLR*PMSSVQNLAPKSEHGSHQ**TSPEH*QRRLTP  4594

Range 4: 4264 to 4599 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 47/112(42%) 0/112(0%) Plus/Plus
Query      284  G*NRVHLRGFAERSDSVSYSKRLFVVVLREIRYPSSLNAKAV*VHWECWLWCSGFEMSQGPGESQGVEVVWYSGSLGADRKERC*QSRQPANFVPEAWGCV*RCDQFLSAAA  619
                G + VHLR   ERSD V Y +R+ ++ L EI       A AV V+ E  +  SG E+ Q     QG E+   S   G D KERC    Q A+ VPEAWG V*     L AA+
Subject   4264  GRDGVHLRRLVERSDRVPYGRRISIIEL*EIGDSYITRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*GSQLADCVPEAWGRV*GRY*LLQAAS  4599

Range 5: 4131 to 4208 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 14/26(54%) 0/26(0%) Plus/Plus
Query      151  C*VWAI*RRVSGSQRGKRSNVLRDRC  228
                C*V A *+R SG   G  S  LRD+C
Subject   4131  C*V*AT*KRDSGV*EGMPSFRLRDQC  4208

Range 6: 4491 to 4604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 19/38(50%) 0/38(0%) Plus/Plus
Query      511  WR*QERKVLAEPPTCKFCSRSVGMCMKV*PIFIGSSSK  624
                WR* +RKV    P C+ CSRSVG CM+      GS  K
Subject   4491  WR*LQRKVQVGQPACRLCSRSVGTCMRALLASTGSEQK  4604

Range 7: 4275 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 15/27(56%) 0/27(0%) Plus/Plus
Query      295  GTSTGIR*TFRQCVLQQALICRRATRN  375
                GT T  R*TFR C L+   I  RA RN
Subject   4275  GTFTATR*TFRPCALRPPHIYHRAMRN  4355

Nucleotide Sequence (646 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
65
130
195
260
325
390
455
520
585
646

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
363.5 1205.8 57% 1.041e-99 50% NC_016509

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 11

Range 1: 15702 to 16343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
363.5 bits(787) 0.0 150/214(70%) 0/214(0%) Minus/Plus
Query        4  QNVLGVFGYFGGSHGAKLRPFVYYGNSYYYNERMTPTEISRDIFDYVDIEINLNLSKKNVVTAASVNGIDMPCLGYALKNGSLRFGHEIIFHVIDDDLHYLVDTSTRNKRIEGLYTESKIKVDDGDVLLRDVEMAGRRLERIYSNNKGVEPSVHVMNVRGWKTLFEITASVTTTDVRHEKFENSMLYYEVFDKNLEDVAKACSYSEIPNATVAG  645
                +NVL +   FGG+HGAKLRPFVYYG SYYYNE+M PT+IS D+ DYV++EI+L LSKK VVTAA +NGID+PCLGYALKNG+LRFGHEIIF V DD LHYL+D STRNKRIEGLYTE  +KVD GDVLL DV+MAG  L+R YSN  G+EPS+HV NV  WK+LF ++AS T T V     EN+MLYYEV D+NLEDVAK C Y EIP ATVAG
Subject  15702  KNVLELGVDFGGTHGAKLRPFVYYGGSYYYNEQMVPTDISEDVLDYVNVEISLTLSKKRVVTAALINGIDVPCLGYALKNGTLRFGHEIIFKVDDDSLHYLLDKSTRNKRIEGLYTELVVKVDGGDVLLGDVDMAGTPLDRAYSNKTGIEPSIHVANVGDWKSLFVLSASDTRTGVEQPYTENAMLYYEVVDRNLEDVAKTCGYFEIPTATVAG  16343

Range 2: 15746 to 16255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 114/170(67%) 0/170(0%) Plus/Minus
Query       92  IEFSNFSCLTSVVVTEAVISNKVFQPLTFITCTEGSTPLLFEYILSNRLPAIXXXXXXXXXXXXFILDSVYSPSIRLFLVDVSTR*CKSSSIT*NIISCPNRSDPFFRAYPRHGISIPLTEAAVTTFFFERLRLISMST*SNISLDISVGVIRSL**YELP**TKGRNFA  601
                I FS   C T V+V+EA  +NK+FQ  TF TC EGS P+LFEY LS+ +PAISTS + TSP ST   +SVY+PSIRLFLVD+S R*CK SS T  IISCPNRS PFF+A PRHG SIP  +AAVTT FFER++LIS  T*SN S DISVG I SL**YE P**TKGR+ A
Subject  15746  IAFSV*GCSTPVLVSEADKTNKLFQSPTFATCIEGSIPVLFEYALSSGVPAISTSPNKTSPPSTLTTNSVYNPSIRLFLVDLSNR*CKLSSSTLKIISCPNRSVPFFKA*PRHGTSIPFIKAAVTTLFFERVKLISTFT*SNTSSDISVGTICSL**YEPP**TKGRSLA  16255

Range 3: 16243 to 16344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/34(62%) 0/34(0%) Plus/Minus
Query        3  IRQP*RSVFPNSYKLLLRLLDFYQILHSRALNFQ  104
                I+Q *RSVF NS    LRLL+FY++LHS+AL+F+
Subject  16243  IQQQ*RSVFQNSRTFSLRLLNFYRLLHSKALHFR  16344

Range 4: 15726 to 15962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 44/79(56%) 0/79(0%) Plus/Minus
Query      385  VSEPQRPIFQSIP*ARHIDSIN*SCRYYIFL*KIKINLNVNVIEYISRYLSWGHSFIVII*ITIVNKGP*LRAMTTPEI  621
                VSE QR +FQ + *ARH+DS+ *S RY  FL*+ + +LNV++I+YI RY+SW H  I+II* T+VNKG *   M+ PE+
Subject  15726  VSESQRSVFQGVT*ARHVDSVY*SSRYDSFL*ESQTDLNVHIIQYIFRYISWNHLLIIII*TTVVNKGS*FSTMSAPEV  15962

Range 5: 16023 to 16196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 31/58(53%) 0/58(0%) Plus/Minus
Query      151  EQGLPTSHVHNVHGGLDPFIV*IYSL*SSTCHLDIS**YITVVDLYFRFCIQPFDSFI  324
                +Q  P SHV NV+  LDP  V*+ S+*  TCH+++S * +T +DL   F IQPFDSFI
Subject  16023  KQAFPVSHVRNVYRRLDPRFV*VRSV*WRTCHINVSQ*NVTAIDLND*FSIQPFDSFI  16196

Range 6: 16245 to 16343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 22/33(67%) 0/33(0%) Plus/Minus
Query        4  SGNRSVRYFRIATSFCYVF*IFIKYFIVEH*IF  102
                S N S RYF+IA  F YVF*I I YFIV+H IF
Subject  16245  SSNSSGRYFKIAARFRYVF*ISIDYFIVKHCIF  16343

Range 7: 16024 to 16344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 53/107(50%) 0/107(0%) Minus/Plus
Query        3  INESKGCIQNLK*RSTTVMYY*EMSRWQVDD*REYIQTIKGSSPPCTL*T*EVGRPCSK*QLQSQRRTLDMKNLKIQCSTMKYLIKI*KT*QKLVAIRKYRTLRLPD  323
                INESKGCI N   RS  V +Y E   WQV  * E  QT +GSS   TL T E G+ C   QL ++ +  +    K+QC TMK  I+I*KT*+K  AI KYR L L D
Subject  16024  INESKGCILN*SLRSMAVTFYWETLIWQVRH*TERTQTKRGSSLLYTLRTWETGKACLFYQLLTRGQASNNPIPKMQCFTMK*SIEI*KT*RKRAAILKYRPLLLLD  16344

Range 8: 15730 to 15966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 41/79(52%) 0/79(0%) Minus/Plus
Query      381  SGVVMARSYGPLFTMVIHIITMNE*PQLRYREIYSITLTLRLILIFQRKM**RQLQLMESICRA*GML*KMGRCGSDTR  617
                SG +M  +Y PLFT V+HII M++  QL YR++Y I  TLR + + QRK  *R L   ES CRA*   *K  RC SDT+
Subject  15730  SGALMVLNYDPLFTTVVHIIIMSKWFQLIYRKMYWIM*TLRSV*LSQRKES*RLL**TESTCRA*VTP*KTERCDSDTK  15966

Range 9: 15727 to 15951 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 40/75(53%) 0/75(0%) Plus/Minus
Query      396  AATHFSEHTLGTAYRFH*LKLPLLHFSLKD*D*SQCQRNRIYLSISQLGSFVHCNNMNYHSKQRAVTSRHDYPRN  620
                AA  FS   LGTA RF  LK PL  FSL++ +*SQ   N I+L I QL  F H NNMN+ SKQR V   H+ PR+
Subject  15727  AAFRFSRRNLGTARRFRLLKQPLRLFSLRESN*SQRSHNPIHLPIYQLEPFAHYNNMNHRSKQRVVV*HHECPRS  15951

Range 10: 15991 to 16053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/21(67%) 0/21(0%) Plus/Minus
Query      294  ILYTALRFVYFWLMYLLDNVN  356
                I YT LRFVY   +YL+DNVN
Subject  15991  IQYTTLRFVYS*SIYLIDNVN  16053

Range 11: 15800 to 16048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 45/83(54%) 0/83(0%) Minus/Plus
Query      299  NDPN*DIERYIRLR*H*D*S*SFKEKCSNGSFS*WNRYAVPRVCSEKWVAAVRTRDYISRY*RRFTLSSRYINQK*TNRRAVY  547
                N  N* I R I L   *D   S KEK  NG F+  NR AVPR+  EK  AA+RTR+Y    *R+FTLS R I+ +*TNRR VY
Subject  15800  NGSN*YIGRCIGLCER*DQFDSLKEKSRNGCFNKRNRRAVPRLRLEKRNAAIRTRNYF*S**RQFTLSIR*ID*E*TNRRVVY  16048

Nucleotide Sequence (418 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
418

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
216.4 1119.8 31% 1.093e-55 60% NC_016509
72.1 72.1 13% 3.075e-12 49% NC_029783
40.5 94.4 17% 1.834e-08 40% NC_016417
41.8 93.9 15% 2.475e-08 35% NC_011702
40.0 93.0 17% 4.499e-08 40% NC_016416

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 9676 to 10050 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 91/125(73%) 0/125(0%) Plus/Plus
Query       13  LYGLAAVFPRTSVHCFTFHTCCIVLRCVFCCESYTTLLRENRG*TGRRTS*FIV*VRSSTVDRMEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRAYSDFLTGKP  387
                LYGLA VFPRTS++ F+F+T  +V   +F  +SY+ LL ENRG*TG RT  FIV*VRSSTVD MEVGLDFGTT ST CFS+P++DD GCV+LVNS FVPTQ+FIGSDMTYSIGHRAYSDF+ GKP
Subject   9676  LYGLATVFPRTSIYRFSFYTSSLVFCRIFYRKSYSALLCENRG*TGARTRKFIV*VRSSTVDGMEVGLDFGTTFSTACFSVPSEDDSGCVTLVNSPFVPTQVFIGSDMTYSIGHRAYSDFVAGKP  10050

Range 2: 9676 to 10047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 92/124(74%) 0/124(0%) Minus/Minus
Query       13  FAGEEIRVSSVSNAVSHVTSYKNLRWNEXXXXXXXXXXXILRGDRKTDRADSSAEIKSHFHPIYG*ATYLNDELAGPSTGLSSIFAQQCRIALTTKYTAKHNTTSMKSETVYRSSWENCRKSIK  384
                FA  +I V SV NA+ H+TSYKNLRWNE RIH R+AP II R +RKT R +SSAEIKSHFH +YG*ATYL DE  G  TGLSSIFAQQCRIALT KYT KH  TS+K ETVYRSSWENCRKSIK
Subject   9676  FACYKIGVGSVPNAIRHITSYKNLRWNERRIHQRYAPGIIFRWNRKTSRTESSAEIKSHFHSVYG*ATYLYDEFPGSRTGLSSIFAQQCRIALTIKYTTKHKATSIKRETVYRSSWENCRKSIK  10047

Range 3: 9677 to 9982 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.9 bits(419) 0.0 85/102(83%) 0/102(0%) Plus/Plus
Query       14  FMDLRQFSHELLYTVSLFILVVLCFAVYFVVRAIRHCCAKIEDKPVEGPANSSFRYVAQP*IGWKWDLISALLSARSVFRSPRKMIRGACR**ILCSFQRRF  319
                FMDLRQFSHELLYTVSLFILV LCF VYF+VRAIRHCCAKIEDKPV  P NSS+RYVAQP*  WKWDLISALLS R VFR  RKMI GA R *IL SFQRRF
Subject   9677  FMDLRQFSHELLYTVSLFILVALCFVVYFIVRAIRHCCAKIEDKPVREPGNSSYRYVAQP*TEWKWDLISALLSVRLVFRFHRKMIPGA*RW*ILRSFQRRF  9982

Range 4: 9675 to 10049 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 89/125(71%) 0/125(0%) Minus/Minus
Query       12  GLPVRKSE*ALCPML*VMSLPIKICVGTNIEFTNDTHPGSSCVGIEKQIVLIVVPKSSPTSILSTVELRT*TMN*LVLLPVYPRFSRNNVV*LSQQNTQRSTIQQV*KVKQCTEVRGKTAASP*R  386
                GLP  KSE*ALCPML V+SLPIK CVGTN EFTN THP SS  G EKQ VL VVPKSSPTSI STVELRT TMN LVL PVYPRFS N+  *L + N +++T   V*K K+  EVRGKT ASP*R
Subject   9675  GLPATKSE*ALCPMLYVISLPIKTCVGTNGEFTNVTHPESSSDGTEKQAVLKVVPKSSPTSIPSTVELRTYTMNFLVLAPVYPRFSHNSAE*LLR*NIRQNTRLLV*KEKRYIEVRGKTVASP*R  10049

Range 5: 9669 to 10058 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 81/130(62%) 0/130(0%) Plus/Plus
Query        6  SVSLWTCGSFPTNFCTLFHFSYLLYCASLCILL*ELYDIVARKSRINR*KDQLIHRLGT*LNRR*DGSGT*FRHYYQHDLFFDPHAR*SGVRVVSEFYVRSNADFYRK*HDLQHWTQSLL*FPHRQTKHT  395
                ++SLWTC SFPTNF   F F Y   C    IL *EL+  V RKSRINR ++Q IHR+GT*LNRR +GSGT*FRHY+Q+ LFF    R*  VR V EF VRSNA FYRK*+D+ HW QSLL F  RQT+ T
Subject   9669  TLSLWTCDSFPTNFYIPFLFLY**PCVLSYILS*ELFGTVVRKSRINRCENQEIHRIGT*LNRRRNGSGT*FRHYFQYGLFFGSIGR*FRVRNVGEFSVRSNAGFYRK*YDV*HWAQSLLRFCSRQTRGT  10058

Range 6: 9671 to 10048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 76/126(60%) 0/126(0%) Minus/Minus
Query        8  VCR*GNQSKLCVQCCKSCHFL*KSALERT*NSLTTRTPDHLAWGSKNRSC***CRNQVPLPSYLRLSYVPKR*ISWSFYRFILDFRATMSYSSHNKIHSEAQYNKYEK*NSVQKFVGKLPQVHKDT  385
                VC   N+S+LC QC  S HFL*K ALERT NS T RT +HL    KN+  * *CRNQVPLP  LRLSYVP R*ISW  +RFILDFR T+  SS++KI+ + Q   Y+K N + KFVGKL QVHK++
Subject   9671  VCLLQNRSRLCAQCYTSYHFL*KPALERTENSPTLRTRNHLPMEPKNKPY*K*CRNQVPLPFRLRLSYVPIR*ISWFSHRFILDFRTTVPNSSYDKIYDKTQGY*YKKRNGI*KFVGKLSQVHKES  10048

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 10283 to 10441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 26/53(49%) 0/53(0%) Plus/Plus
Query      202  MEVGLDFGTTISTICFSIPTQDDPGCVSLVNSMFVPTQIFIGSDMTYSIGHRA  360
                MEVG+DFGTT ST+C+++    D  CV +  S++VPT+I +  D +Y+IG+RA
Subject  10283  MEVGIDFGTTFSTLCYNVGEDADDCCVRIAGSIYVPTEILVYPDNSYTIGYRA  10441

Grapevine leafroll-associated virus 6, complete genome

Sequence ID: Length: 13807 Number of Matches: 3

Range 1: 8919 to 8984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 15/22(68%) 0/22(0%) Plus/Plus
Query      187  STVDRMEVGLDFGTTISTICFS  252
                +T+  MEVG+DFGTT ST+CFS
Subject   8919  TTILIMEVGIDFGTTFSTLCFS  8984

Range 2: 8991 to 9080 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 12/30(40%) 0/30(0%) Plus/Plus
Query      262  QDDPGCVSLVNSMFVPTQIFIGSDMTYSIG  351
                +D  GCV   +++++PT + I  D TY+IG
Subject   8991  RDVEGCVPESDTIYIPTVVGIRKDGTYTIG  9080

Range 3: 8821 to 8880 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 8/20(40%) 0/20(0%) Plus/Plus
Query       47  LYTVSLFILVVLCFAVYFVV  106
                ++ +  FIL++L FAV  +V
Subject   8821  VFQICAFILIILFFAVLALV  8880

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 3

Range 1: 8784 to 8837 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 15/18(83%) 0/18(0%) Plus/Plus
Query      199  RMEVGLDFGTTISTICFS  252
                RMEVG+DFGTT ST+CFS
Subject   8784  RMEVGIDFGTTFSTLCFS  8837

Range 2: 8856 to 8933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 10/26(38%) 0/26(0%) Plus/Plus
Query      274  GCVSLVNSMFVPTQIFIGSDMTYSIG  351
                GCV   +++++PT + +  D TY+IG
Subject   8856  GCVPESDTVYIPTVVGVRRDGTYTIG  8933

Range 3: 8675 to 8734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 7/20(35%) 0/20(0%) Plus/Plus
Query       47  LYTVSLFILVVLCFAVYFVV  106
                ++ ++ F+L++L FAV  +V
Subject   8675  VFQIAAFVLIILFFAVLALV  8734

Grapevine leafroll-associated virus 4, complete genome

Sequence ID: Length: 13830 Number of Matches: 3

Range 1: 8926 to 8994 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 16/23(70%) 0/23(0%) Plus/Plus
Query      184  SSTVDRMEVGLDFGTTISTICFS  252
                S+T   MEVG+DFGTT ST+CFS
Subject   8926  STTGIIMEVGIDFGTTFSTLCFS  8994

Range 2: 9013 to 9090 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 11/26(42%) 0/26(0%) Plus/Plus
Query      274  GCVSLVNSMFVPTQIFIGSDMTYSIG  351
                GCV   +++++PT + I +D TY+IG
Subject   9013  GCVPESDTIYIPTVVGIRNDGTYTIG  9090

Range 3: 8831 to 8890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 8/20(40%) 0/20(0%) Plus/Plus
Query       47  LYTVSLFILVVLCFAVYFVV  106
                ++ +  FIL++L FAV  +V
Subject   8831  VFQICAFILIILFFAVLALV  8890

Nucleotide Sequence (567 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
567

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
404.7 1320.2 33% 3.399e-112 44% NC_016509
171.1 380.2 42% 8.291e-51 39% NC_029783
151.8 208.3 30% 4.724e-36 41% NC_022072
120.2 227.0 41% 1.707e-32 39% NC_005065
92.3 365.6 26% 2.1e-31 32% NC_004667

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 10

Range 1: 6689 to 7234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
404.7 bits(877) 0.0 165/182(91%) 0/182(0%) Minus/Plus
Query        1  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI  546
                IDEVYMLHKGMFQLTVV+MGVKEV+ YGDKNQIPFINREKTFVTPNE+VEFA+E IEYTD+SYRCPADVCYVLSSMTD RG +LYPNGV+PNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR VAKM+IAAGK+RPDVLTTHEAQGKTY DVVLVRLKKA+DPIFSR+PHI
Subject   6689  IDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTFVTPNEAVEFAEELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHI  7234

Range 2: 6688 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
312.2 bits(675) 0.0 153/180(85%) 0/180(0%) Plus/Minus
Query        8  GCREKIGSSAFFNLTRTTSL*VLPCASCVVSTSGLRFPAAISIFATALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSM  547
                G REKIGSSAFFNLT TTS  VLPCASCVV+TSGL FPAAISIFAT LCISAFSF*VIV+ TSASYSKASSGVAIGTFSKER+GRVSPLG TPFGYNL PR SVIDD T* TSAGHLYE SVYSI SSANST SLGVTNVFSL +NGI FLSPY  TSFTPI TTVN*N+PLC+IYTSS+
Subject   6688  GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLFFPAAISIFATTLCISAFSF*VIVR*TSASYSKASSGVAIGTFSKERKGRVSPLGNTPFGYNLAPRISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSI  7227

Range 3: 6767 to 7000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 40/78(51%) 0/78(0%) Plus/Minus
Query      235  HLFKRAQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV  468
                HL +RA RS +P+R H+IR+Q   S ISHR   +T ISRAPV*N+ +L+ L  +F+ F+R DKRLF + +  L+LI+V
Subject   6767  HLLERA*RSSVPVRKHTIRVQFSSSHISHRR*YVTYISRAPV*NVSVLNQLFREFYGFIRRDKRLFPVDKWYLILISV  7000

Range 4: 7043 to 7234 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 34/64(53%) 0/64(0%) Plus/Minus
Query        1  DMWLPRKDRIFSLLQPH*DDISVGLALRFMCCQHIRPSLPCRYIHLRYSSLHFRLFILSHC*VH  192
                +M LPR+DRI  LLQ +  +I++ LALRFM   HI P    R  HLR + LHF  FILSHC V+
Subject   7043  NMRLPREDRIICLLQSYQYNITIRLALRFMRR*HIWPLFSSRNFHLRNNPLHFCFFILSHCQVN  7234

Range 5: 6689 to 6727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 10/13(77%) 0/13(0%) Plus/Minus
Query      508  LKHALVQHIHLID  546
                LKH+L+QHIH ID
Subject   6689  LKHSLMQHIHFID  6727

Range 6: 6850 to 7233 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 65/128(51%) 0/128(0%) Minus/Plus
Query        2  ADRVYRCFIQVPG*CLLCPVIDD*FAREKVVSEWSVP*WGYTTSALF*KGANCDS*GCFTI*SGCVLNNDSE*KGGNAESCSEDGYSGREAKAGCADNT*SARQDLQRCRPSEVEEG*RSYLFAATTY  385
                AD V+  FIQVP *C+L  ++DD*+AR  +V EW V * G++T  LF +GA  +S G FT+*SGC+ +NDSE*K  NAE C EDG  G + +A C ++ *SARQD+  C   ++EEG  S L A  +Y
Subject   6850  AD*VH*HFIQVPC*CMLRIIVDD*YARS*IVPEWCVS*RGHSTFTLFREGAYRNSRGRFTV*SGCLPDNDSE*KSRNAEGCCEDGNCGWKKEARCVNDA*SARQDVW*CCIGKIEEGR*SDLLAEASY  7233

Range 7: 6690 to 6728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 9/13(69%) 0/13(0%) Minus/Plus
Query      507  SMRCICCTRACFN  545
                SM+CICC R CF+
Subject   6690  SMKCICCIRECFS  6728

Range 8: 6768 to 7232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 82/155(53%) 0/155(0%) Minus/Plus
Query        3  TAIRTRFRS*IEKRRLSLLTNLWNLQMSRSSIPMFHTGARLMFVMSCHR*LIREGKGCIRMECTLMGIHDLCALLKRCQXXXXXXXXXMKRMCT*Q*LRMKRRKCREL*RRWI*RQGSEGRMC*QHMKRKARPTEMSS**G*RRLKILSFRGNHI  467
                T IR R+     KRRLS L    N + S  S   FHTGA LM+V    R*LI E   C RM C L G  DL AL +RC  +L R LY MKRM T*Q*LRMK++KCR L RRW  R    G+MC*+ MKRKAR   M   * *RR  I S RG+ I
Subject   6768  TEIRIRYHLSTGKRRLSRLMKP*NSRKS*LSTLTFHTGALLMYVTYYRR*LICEELNCTRMVCFLTGTLDLYALSRRCLSQLQRTLYCMKRMFT*Q*LRMKKQKCRGLLRRWKLRLEKRGQMC*RRMKRKARRMVMLYW*D*RRQMIRSSRGSLI  7232

Range 9: 6768 to 7082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 55/105(52%) 0/105(0%) Plus/Minus
Query      153  AFPPFHSESLLSTHPLHIVKHPQESQLAPFQKSAEVVYPH*GTLHSDTTFSLANQSSMTGHNKHQPGTCMKHRYTRSAHLQIPQIR*E*QTSFLYL*TESGSYRR  467
                AF  FHSESL   HPLH VK P E + AP +KS +V  P * T HS T   LA QSS    N HQ GTCMK + T+SA  +I ++ * *QTSF   *  S SY R
Subject   6768  AFLLFHSESLSGKHPLHTVKRPLELR*APSRKSVKVECPR*ETHHSGTI*LLAYQSSTIIRNIHQQGTCMKCQCTQSALPRILRLH*A*QTSFPC**MVSDSYLR  7082

Range 10: 7125 to 7232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 16/36(44%) 0/36(0%) Plus/Minus
Query        3  YVVAAKR*DLQPSSTSLGRHLCRSCLALHVLSAHPA  110
                Y  +A+R D  PSS    +H   SCLALH    H A
Subject   7125  YEASARRSDHLPSSILPIQHHHTSCLALHASLTHLA  7232

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 5

Range 1: 6993 to 7391 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 71/133(53%) 0/133(0%) Minus/Plus
Query      148  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR  546
                IDEVY+LHKG     + +M  KE + YGD NQIPF NREK FV    +++  + +IEYT++SYRCPADVCY+LS M +  GK  YPNGV    D RPLRS   +PI  P +A+  + DV+LT TQ EKAE+ R
Subject   6993  IDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIR  7391

Range 2: 7401 to 7520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 21/40(52%) 0/40(0%) Minus/Plus
Query        4  AGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPH  123
                +  R   V T HEAQGKT+  V LVRLKKA+D +    PH
Subject   7401  SASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPH  7520

Range 3: 6980 to 7393 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 58/138(42%) 0/138(0%) Plus/Minus
Query      146  ALCISAFSF*VIVXXXXXXXXXXXXGVAIGTFSKERRGRVSPLGYTPFGYNLFPRESVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSMPNQT  559
                +L  SAFS  V VK TS S   AS G  IG     R G +S    TPFG   FP +  I D+ * TSAGHL +  VYSI  S        +TN+FS F  GIW  SP    S   +      + PLCN  TSS+   T
Subject   6980  SLINSAFSACVYVKKTSTSSRIASDGPFIGITRILRNGLLSSKACTPFG*QGFPSKFTILDKR*HTSAGHL*DMLVYSISVSLGLIAE*CMTNIFSRFEXGIWLTSP*HIASLHRMAARQKVSWPLCNR*TSSISPNT  7393

Range 4: 7071 to 7289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 30/73(41%) 0/73(0%) Plus/Minus
Query      250  AQRSCIPIRVHSIRIQPFPSRISHR*QDITNISRAPV*NIGILDLLICKFHRFVRSDKRLFSIYERNLVLIAV  468
                AQ S +   +HSIR+  FP +I H  Q+I ++    V  +G+LDL +  F R V  DK LF+I + +LV IA+
Subject   7071  AQWSPVFKGLHSIRVTRFPIQIHHLGQEIAHVRWTSVGYVGVLDLRLIGFDRRVVHDKHLFAI*KXDLVDIAI  7289

Range 5: 12617 to 12700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 11/28(39%) 0/28(0%) Plus/Minus
Query       97  QHIRPSLPCRYIHLRYSSLHFRLFILSH  180
                QH RPSL C+    +++S H     L+H
Subject  12617  QHSRPSLICQLKIEKWASSHTIYISLNH  12700

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 7244 to 7642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 64/133(48%) 0/133(0%) Minus/Plus
Query      148  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR  546
                +DEVYM+H+G+ Q    + G KE + YGD +QIPFINREK F   +  ++     I+YT  +YRCP DVC++LS++ DS+G++ Y  GV     T  +RSFEK PI +  D    EADVYL  TQ EK EM+R
Subject   7244  VDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKR  7642

Range 2: 7610 to 7771 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 22/54(41%) 0/54(0%) Minus/Plus
Query        4  KAEMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPH  165
                + + ++   K ++ +  R   V+T HEAQGKT+  VVL R K+A+D +F+ QPH
Subject   7610  QTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPH  7771

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 4

Range 1: 4785 to 5168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 53/128(41%) 0/128(0%) Minus/Plus
Query      163  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTFVTPNESVEFADEQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEK  546
                IDE +++H G  ++  V  G  EV +YGD  QIPFINR ++F   N  V+    ++   +VSYRCP+DVC +LS   D RG   YP GV     +RP RS     I++  D  +   DV++T TQ+EK
Subject   4785  IDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEK  5168

Range 2: 5220 to 5312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 16/31(52%) 0/31(0%) Minus/Plus
Query        4  TTHEAQGKTYRDVVLVRLKKAEDPIFSRQPH  96
                T HE QGKT   V ++RLK AED +F+   H
Subject   5220  TVHEIQGKTVPFVKIIRLKAAEDSVFTMTGH  5312

Range 3: 4964 to 5053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 16/30(53%) 0/30(0%) Plus/Minus
Query      278  YTPFGYNLFPRESVIDDRT*QTSAGHLYET  367
                +TP G + FPR S+  D   QTS GHL ET
Subject   4964  FTPAG*HKFPRLSLFSDNMTQTSEGHL*ET  5053

Range 4: 4769 to 4891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 16/41(39%) 0/41(0%) Plus/Minus
Query      440  MNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSSMPNQTH  562
                + GI  LSPY  TS  P +T    N P C    SS+   +H
Subject   4769  IKGIC*LSPYRYTSSAPANTAQIFNSPACTRKHSSIQTVSH  4891

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 6

Range 1: 6339 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 40/82(49%) 0/82(0%) Minus/Plus
Query      142  EQIEYTDVSYRCPADVCYVLSSMTDSRGKRLYPNGVYPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQRAV  387
                E + YT  SYRCP DVCY+LSSMT    ++ YP  V    D   +RS  K PI T +D     ADVYL MTQ EK++M+R++
Subject   6339  ESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSL  6584

Range 2: 6180 to 6305 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 24/42(57%) 0/42(0%) Minus/Plus
Query      421  IDEVYMLHKGMFQLTVVSMGVKEVVVYGDKNQIPFINREKTF  546
                +DEV+M+H+G+ QL V + G  E + +GD NQIPFINREK F
Subject   6180  VDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF  6305

Range 3: 6182 to 6412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 34/77(44%) 0/77(0%) Plus/Minus
Query      314  SVIDDRT*QTSAGHLYETSVYSICSSANSTDSLGVTNVFSLFMNGIWFLSPYTTTSFTPIDTTVN*NMPLCNIYTSS  544
                +VI+D  *QTS GHLY+  VY+  S   +  +  + N FSLFMNGI F+SP    S  P+  T + + P C + TSS
Subject   6182  TVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSS  6412

Range 4: 6608 to 6709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 22/34(65%) 0/34(0%) Plus/Minus
Query        2  ICGCREKIGSSAFFNLTRTTSL*VLPCASCVVST  103
                ICGC     SSAFF L  TTSL V PCASC V T
Subject   6608  ICGCLVNRESSAFFVLNNTTSLNVFPCASCTVIT  6709

Range 5: 6474 to 6575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 11/34(32%) 0/34(0%) Plus/Minus
Query      151  LHFRLFILSHC*VHXXXXXXXXXXXXNWHLFKRA  252
                LH RL  L H  VH+      ++   NW   +R+
Subject   6474  LHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRS  6575

Range 6: 6552 to 6710 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 24/53(45%) 0/53(0%) Minus/Plus
Query        1  EMQRAVAKMDIAAGKRRPDVLTTHEAQGKTYRDVVLVRLKKAEDPIFSRQPHI  159
                +++++  K  +    +   V+T HEAQGKT+ DVVL R KKA+D +F++QPHI
Subject   6552  QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHI  6710

Nucleotide Sequence (839 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
84
168
252
336
420
504
588
672
756
839

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
599.9 2055.7 28% 9.728e-171 49% NC_016509
295.7 411.9 18% 3.772e-79 35% NC_004667
283.3 381.7 21% 1.999e-75 40% NC_029783
150.4 398.8 28% 1.165e-72 30% NC_022072
110.6 195.0 26% 8.494e-43 36% NC_011702

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 10

Range 1: 2378 to 3187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
599.9 bits(1303) 0.0 253/270(94%) 0/270(0%) Minus/Plus
Query        1  VRLTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  810
                +RL TAEE+ MTVESV+K EAAKNITYCQMDTR C+HKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDG LTIPELGVEV RKGDVI+YTVGGVGDAY HSV KIISFFGSNVVQLPSGSA+SVEYVGYRLGYHQFSLCVIDTA+ASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTS FVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV
Subject   2378  LRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHV  3187

Range 2: 2566 to 3186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
401.5 bits(870) 0.0 177/207(86%) 0/207(0%) Plus/Minus
Query        2  T*AFFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRLYEA*AVSITQREN***PSL*PTYSTE*ALPLGSCTTLLPKKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNILM  622
                T AFFLSV+ACII ATTSPHCSSGDNSTLSCTTRVPT+TCVFWLRA +TAYS VLST  +VVLSKYEYTRSTKSESKYICLN++KPSAISGIIT+LCPLNVVDTFLV+LYEA*AVSIT REN* *PSL*PTYSTE ALPLG+ TTLLPKKL+IF TE  *ASPTPPTVY +TSPFR TSTPSSGIVR PS AVSSIGNIKHNSNI +
Subject   2566  TCAFFLSVIACIINATTSPHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFCTE*V*ASPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFI  3186

Range 3: 2374 to 2508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 32/45(71%) 0/45(0%) Plus/Minus
Query      680  MNPTRALCSHIRVSI*QYVIFFAASFFITLSTVIALSSAVVSLTH  814
                M PT AL S  RVSI QYV+FFAASF  TLSTVI  SSAV SL H
Subject   2374  MKPTGAL*SQKRVSIWQYVMFFAASFLSTLSTVITFSSAVASLKH  2508

Range 4: 2396 to 3187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.9 bits(694) 0.0 136/264(52%) 0/264(0%) Plus/Minus
Query        1  YVSFLSIRDGLYHQSYDQPPLFLGRQFDLIMYDAGSYYDMRFLAPRA*NSVLKSPIHKGRGRVKQI*VHTINEVRV*VHLPERQETISYLRYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN*IGAAAR*LYHITPKKAYDL*NRMCISIAHTTNSVQYDVTLSRYFHA*LRYSKAPISSRQFDWKHQAQLEYFDVLLLQSLSQFENV*VINVDHESNPCLMLTHTRIHLTIRDILRRFVLHHAFNCHSSLL  792
                +V  LS+ D LYHQ Y+Q PL   RQFDL+++   ++ +MR LAPRA + VLK  IH+ R R+KQI VHTINE+ +*VHL E ++TIS LRYH QTMSLKR RH PR+I+RG+S + NA+RKLM+T+PV ++L+    A  *L  +TP++ Y+L + M +SIA+ ++S+ Y +  S +FH    YS A +S  Q  WKHQAQLEYF + LL  L QF+N+*V++V+HE+N   M+T  R+HL +RD+LR   L HAF+CH+  L
Subject   2396  HVCLLSVCDRLYHQRYNQSPLLFRRQFDLVVHHTCTHDNMRLLAPRARHGVLKCSIHECRRRIKQIRVHTINEIGI*VHLSE*EKTISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKHAFDCHNLFL  3187

Range 5: 2499 to 3071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 100/191(52%) 0/191(0%) Minus/Plus
Query      117  LDSWSTFMT*TFSNWLKLWRRRTSKYSSCA*CFQSN*RLEMGALLYLS*AWKYRERVTSYCTLLVVWAMLMHIRFQRS*AFLGVMWYSYLAAAPIQLSTWVTGWVIISFLFAL*TLLTPRIISRGRCRLRLRDIVW**YRR*LMVSCRSGRCT*TRTSLIVCTHICLTRPRPLWIGLLSTLFHARGAKKRM  689
                L SW T  T* F NW K  RR+  KYSSCA*CFQ +*+ E  A LY +  WK+ E+    C L    AML  I  +R *   GV  +SY  A   + S   TG V ISFL AL   L PR I RG+CR RLRDIVW *YRR LMV   S +CT*   SLIVCT ICL R    WI  LST   ARGA++RM
Subject   2499  LVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMVFSHSDKCT*IPISLIVCTRICLIRRLHSWIEHLSTPCLARGARRRM  3071

Range 6: 2398 to 2511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 20/38(53%) 0/38(0%) Minus/Plus
Query      677  GESYDS*KRDEERSGEEYHVLSDGYAYV*A*GTGWIHG  790
                G+ YDS KR  ER  EE+HVL +G+A +*+*   W HG
Subject   2398  GKGYDSRKRA*ERGCEEHHVLPNGHALL*S*SASWFHG  2511

Range 7: 3102 to 3185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        3  RSNCLPRNSGGWS*L**YRPSRIERKLT  86
                RSNCL ++SG W * **Y+ S+ ER+ T
Subject   3102  RSNCLRKSSGDWL*R**YKRSQTERRHT  3185

Range 8: 2451 to 3155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 116/235(49%) 0/235(0%) Plus/Minus
Query       33  VSSELRPAPTVPRETIRPYHVRRGFLL*HAFFGSARMKQRTQKSYPQRSRSC*ANMSTHDQRSPSLSTSA*TTRNHQLSPVSLPNYVP*T*STPSS*DYTRRKQCL*RKEKTDDNPACNPRTQLNRRCR*VAVPHYSQKSL*SLKPNVHKHRPHHQQCTI*RHPFAILPRLAQV**GPHLEPSVRLETSSTTRIF*CPSSPKLEPVRKRLSHKRRP*IQPVPYAHTYAYPSDNT*  737
                VSS L+P PT   ETIRP      +  *HA  GSAR  +RTQ  YP+   S *AN STHDQR+ +LST  *   NHQ SPVS P+YVP*T ST SS + TR ++  *R EKTD N AC+  T+  + C  V    YS+++L*S   N  KHR   +Q T+    FA LP    V* G  L  S  LETSSTTRIF   SS  L P++K LS +R+P* Q   Y H  A P  +T*
Subject   2451  VSSTLQPVPTALPETIRPCRAPHVYPR*HASSGSARKTRRTQMFYPRMQTSY*ANTSTHDQRNRNLSTFV*MRENHQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*  3155

Range 9: 2542 to 3075 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 93/178(52%) 0/178(0%) Minus/Plus
Query      113  GSSFGEEGHQNIRVVLDVSNRTDGSRWGPYYT*ARRGSIAKG*RHIVHCWWCGRCLCTFGFKDHKLFWE*CGTAT*RQRLFS*VRGLQAGLSSVFSLRYRHCLRLV*SHEEGVDYV*GT*FGNDTGDS*WFLVVQADVLRLGLR*SCVLIFA*HDLDLCG*DF*VRCFMRAEPKNACH  646
                G+S  EE ++NIRVVLDVSNR D  R  P YT    GS AK     V+C    RCL +F  +D+K   E*  + T  Q  F  V  LQA L SVFS+RYR+   LV   EE VD V*GT* G DTGD *WF ++Q +VLR   R*SCVL+FA*+D+ + G*+ *VR  +RAEP++AC+
Subject   2542  GASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*WFSLIQTNVLRFRFR*SCVLVFA*YDVCIRG*NI*VRRVLRAEPEDACY  3075

Range 10: 3103 to 3186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/28(57%) 0/28(0%) Minus/Plus
Query        2  GRIVSRGTVGAGRSSDDTGHHG*KESSR  85
                GRIVS   VG G S DDT  H  KE +R
Subject   3103  GRIVSGRAVGTGCSVDDTSDHRQKEGTR  3186

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 3

Range 1: 1806 to 2603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.7 bits(639) 0.0 121/266(45%) 0/266(0%) Minus/Plus
Query        7  LTTAEERAMTVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA  804
                L+TA   +     ++   A+K+++YC  +++ C+ +A  GFMVDVYD+   ++A+A++KK   +F++ LMFP+EL   +G + + EL   V R+GD + Y VG  G+ Y HS S +  FF  + V+  SG+ + +EY GYR GYH  ++C    +  +    R +  +F G SLV IP +A   +SF+ + LDSDFVDR+YSY LNT  TF +RTFEYAV   RSQKTHVI G+RVVH KV++SP++ WGLVVA+M QAI DR K+
Subject   1806  LSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKS  2603

Range 2: 2309 to 2599 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 49/97(51%) 0/97(0%) Plus/Minus
Query       11  FFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLN  301
                F LS++A  I ATT PH SSG+ STL  TTR+P MT VF      TAYS VL + V +VLS  E   STKSES+ I L D    A +G+ T   P N
Subject   2309  FALSLIA*AITATTKPHISSGEISTLLWTTRLPVMTWVFCDLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTN  2599

Range 3: 2009 to 2164 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 18/52(35%) 0/52(0%) Plus/Minus
Query      446  KKLMIFETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIK  601
                K  +  E EC+  SP  PT+    SP   T+  SS     P    +S GNI+
Subject   2009  KNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIR  2164

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 2949 to 3719 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
283.3 bits(612) 0.0 113/257(44%) 0/257(0%) Minus/Plus
Query        7  TVESVMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSLCVIDTAYASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA  777
                T++ +  + A+K  T+C  DTR C  K   GFMVDVYDL  +E+A++L  K ++ F++  M P+EL ARDG  TI EL   V+RKGD++ Y+VGG GD+Y HS  K+ S      V      AY+ EY+GYR GYH   + +     A  ++TR++ TT  G ++V  P      L F+++ +D++FV RVY+Y LN T+TF +RTFEYA+S  RSQKT++IVGTRV+H KV++   ++ G+V+A++I+A+  R+ A
Subject   2949  TIQQLSSSVASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYAMSSFRSQKTNIIVGTRVIHSKVDIEMGDEAGVVLAILIEALRSRRGA  3719

Range 2: 3398 to 3697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 40/100(40%) 0/100(0%) Plus/Minus
Query       29  ACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIITKLCPLNVVDTFLVRL  328
                A I  A T+P  S    STL   T VPTM  VF     + AYS V S  V V L    YTR T S S  I L  +     +G +T + P  VV   LV L
Subject   3398  ASIRIANTTPASSPISMSTLE*ITLVPTMIFVF*DLNDDIAYSNVRSENVVVTLRA*LYTRCTNSVSTAISLKIRMSRR*NGALTIVFPYIVVCMRLVTL  3697

Range 3: 3107 to 3265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 25/53(47%) 0/53(0%) Plus/Minus
Query      461  FETECA*ASPTPPTVYNMTSPFRDTSTPSSGIVRPPSRAVSSIGNIKHNSNIL  619
                F  EC   SP PPT+    SP R T+  +S IV  PS A+SS G+IK  S +L
Subject   3107  F*KECWYESPVPPTL*VSRSPLRVTTVFNS*IVYDPSLAISSTGSIKTMSKVL  3265

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 4

Range 1: 3011 to 3322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 62/104(60%) 0/104(0%) Minus/Plus
Query        7  RKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA  318
                R V ++F   ++VMIP +   ++SF+ + LD+DFVDRVYSY LNT S F  RTFEYAV   RSQKTHVI GTRVVH KVE+S ++ WGLVVA+M QA+ DR K+
Subject   3011  RMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYAVGAVRSQKTHVITGTRVVHSKVEISSDDMWGLVVAIMAQAVKDRLKS  3322

Range 2: 2564 to 2971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 56/136(41%) 0/136(0%) Minus/Plus
Query      358  VMKNEAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSL  765
                ++   A+++I+YC   ++ C  +   G+MVDVYDL   ELA+AL+ K + IF+LC M P+EL A  G + + EL   V R GD ++Y+VG  G++Y H  S++ S+  S   +  SG+ Y VEY GYR+GYH  ++
Subject   2564  IISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTV  2971

Range 3: 3046 to 3318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 44/91(48%) 0/91(0%) Plus/Minus
Query       11  FFLSVMACIIRATTSPHCSSGDNSTLSCTTRVPTMTCVFWLRAHETAYSKVLSTKVEVVLSKYEYTRSTKSESKYICLNDKKPSAISGIIT  283
                F LS  A  I ATT PH SS + STL  TT VP +T VF      TAYS V  +K++ V   YEYTRSTKS S    L D    + +GI+T
Subject   3046  FSLSFTA*AIIATTRPHMSSEEISTLEWTTLVPVIT*VFCDLTAPTAYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMT  3318

Range 4: 2927 to 3058 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 13/44(30%) 0/44(0%) Plus/Minus
Query      271  RYHYQTMSLKRSRHLPREIIRGVSSVYNAKRKLMITQPVTHVLN  402
                RYH      KR  H P   + G   + +  R +++  PVT +L+
Subject   2927  RYHDNCFCGKR*NHHPPGNLLGSDFLTSRNR*VVVAYPVTLILH  3058

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 2

Range 1: 2263 to 2658 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 47/132(36%) 0/132(0%) Minus/Plus
Query      358  EAAKNITYCQMDTRMCEHKARVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGGLTIPELGVEVSRKGDVILYTVGGVGDAYAHSVSKIISFFGSNVVQLPSGSAYSVEYVGYRLGYHQFSL  753
                +  KN+T+C      C H++ V  MVDVYD+ ++ L QA+EKK   +   C MFP EL   DG +  P+  V V+R+G+++ Y V    D Y   V  ++S+  ++ V   SG  YSVE +     Y  F +
Subject   2263  QTLKNLTFCNKPVPCCTHQSTVIIMVDVYDVSLYALLQAMEKKGSLLARCCFMFPPELLNSDGTVVHPDTNVVVTREGELLRYHVANTSDCYTQDVKNVMSYLRNSSVISKSGLVYSVELLNQNGPYLDFQI  2658

Range 2: 2752 to 3009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 39/86(45%) 0/86(0%) Minus/Plus
Query        7  ADGFLSFRQMYLDSDFVDRVYSYLLNTTSTFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKA  264
                +DG L   ++ +D DFV RV SY  N  +T  DRTFEY +S  RSQ T +IVG+++VH+KVELS +    L    + +A+  R+KA
Subject   2752  SDGALISTRLIMDRDFVRRVLSYSANVCNTIDDRTFEYVLSNIRSQTTMMIVGSKIVHNKVELSNDVVVELPATFLREAVRRRRKA  3009

Nucleotide Sequence (493 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
493

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
219.6 1284.2 29% 5.524e-77 49% NC_016509
47.6 47.6 10% 9.26e-05 40% NC_029783
48.9 48.9 10% 3.59e-05 46% NC_004667

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 10

Range 1: 13502 to 13717 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(359) 0.0 71/72(99%) 0/72(0%) Minus/Plus
Query       27  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAIV  242
                ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGA+V
Subject  13502  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEYFVNLYSNGERKLTYEKVKGAVV  13717

Range 2: 13253 to 13453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.9 bits(305) 0.0 59/67(88%) 0/67(0%) Minus/Plus
Query      291  LLDANVFVKGPGGYSLRQSRPSTGQRLGDTEVARREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  491
                L D  VFVKGPGGY+LR SRPSTGQR GD+EVA+REMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME
Subject  13253  LPDEYVFVKGPGGYTLRPSRPSTGQRSGDSEVAKREMGDKLKRTFNIAEIFTNPEMNIIFEPPKDME  13453

Range 3: 13501 to 13716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.7 bits(329) 0.0 68/72(94%) 0/72(0%) Plus/Minus
Query       28  TMAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNISCSIAKKKSVRLF*SVLPITSAHKFFNSVEIAVA  243
                T APLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNI+C+IAKKKSVRLF*SVLPITSAHKFFNSV+IAVA
Subject  13501  TTAPLTFS*VNFRSPLLYKFTKYSSLLSVSGDVLNVNINCNIAKKKSVRLF*SVLPITSAHKFFNSVDIAVA  13716

Range 4: 13252 to 13452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 50/67(75%) 0/67(0%) Plus/Minus
Query      292  SMSFGGSKMMFISGFVKISAILKVLLSLSPISRLATSVSPRR*PVEGRDWRSE*PPGPFTNTFASSK  492
                S+SFGGSK++FISG VKISAILKVL +LSPISRLATS SP R*PV+GR+ R  *PPGPFTNT++S +
Subject  13252  SISFGGSKIIFISGLVKISAILKVLFNLSPISRLATSESPER*PVDGREGRRV*PPGPFTNTYSSGR  13452

Range 5: 13253 to 13717 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.6 bits(473) 0.0 91/155(59%) 0/155(0%) Plus/Minus
Query       27  DNGPFNLLISQFPLAVTI*IHKILFFALCIWRRAKCQHQLQHCQEEVCETFLIRITHHFSA*IF*FC*NSCCYRWCNQARSGWYYYRNLHVLWWFKDDVHLRICENFCDIKSSFKLVTHFASGYLSIP*TLTR*RSRLAKRITSRSLHEHIRIQQ  491
                DNG  NLL+S F LAVT+ IH++LFFAL +W  AK QH LQHCQE++CETFLI +THHFS *IF*F   SCC+   +QA SG ++ RN H+LWWFKD++HL I ++FC I+SS  L+ HF+  +  IP TLTR RSR  + ITSR+ HEHI + Q
Subject  13253  DNGALNLLVS*FSLAVTVQIHEVLFFALSVW*CAKRQH*LQHCQEKICETFLISVTHHFST*IF*FRRYSCCHCRSHQAGSGRHHNRNFHILWWFKDNIHLGISKDFCYIESSL*LIAHFSLSHFRIPRTLTRRRSRRTESITSRTFHEHILVWQ  13717

Range 6: 13267 to 13725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.5 bits(368) 0.0 83/153(54%) 0/153(0%) Minus/Plus
Query       19  CVREGTGRLFASPISTFNGSASRGY*GSQTRNG*QA*KNF*YRRNFHKS*DEHHL*TTKGHGGFGSSTNRTWLGYTSGSNSYFNRIKKFMR*SDG*YGSEKSHRLLLGNAATDVDI*HVARYREQRRVFCEFI**RRAEIDL*EG*RGHCRQT  477
                CVRE +GRL++   ST  GSA  G+*    RNG    +NF Y RN + S DE++L*TTKG+G FG   +RT LG +   NSY   IKKFM *SDG*+ SEKSHR  LGN A +VD+*H+ R+ EQRRV  EF+ *RRA+I+L EG*   C+++
Subject  13267  CVRERSGRLYSPSFSTVYGSAFGGF*SG*ARNGR*VKENFQYSRNLY*SRDEYYL*TTKGYGSFGCGADRTRLGDSGSGNSYIYGIKKFMC*SDG*H*SEKSHRFFLGNVAINVDV*HITRH*EQRRVLREFVQ*RRAKINLREG*GRRCQRS  13725

Range 7: 13521 to 13718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 48/66(73%) 0/66(0%) Minus/Plus
Query       26  N*KIYALK*WVIRIRKVSQTSSWQCCN*C*HLARRQIQRAKKSIL*IYIVTASGN*LMRRLKGPLS  223
                N*KIY LK*WV  IRKVSQ  SWQCCN*C* LA  Q  RAKKS  *I  VTAS N*L RRL+ PLS
Subject  13521  N*KIYVLK*WVTLIRKVSQIFSWQCCN*C*RLAHHQTLRAKKSTS*ICTVTASEN*LTRRLRAPLS  13718

Range 8: 13251 to 13487 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 43/79(54%) 0/79(0%) Minus/Plus
Query      257  FCWMRMCS*RDREVIRFANLDLQRVSV*GILR*PDAKWVTSLKELLISQKFSQILR*TSSLNHQRTWRFR**YQPDLAW  493
                FC   MCS*+ REVI    LD  RVSV GIL+    KW  S +EL I QK   I R*  SLNHQR W+FR   +PD AW
Subject  13251  FCQTSMCS*KVREVILSVLLDRLRVSVRGILKWLSEKWAIS*RELSI*QKSLLIPR*ILSLNHQRIWKFRLWCRPDPAW  13487

Range 9: 13527 to 13703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 39/59(66%) 0/59(0%) Plus/Minus
Query       41  *PSHKSISARRYYINSQNTLLCSLYLATC*MSTSVAALPRRSL*DFSDPYYPSLQRINF  217
                *PS K I ARRY  NS++TLLCS  L  C* ST +A LPR++L*DFSD  YPSLQ INF
Subject  13527  *PSRKLIFARRYCTNSRSTLLCSQCLVMC*TSTLIATLPRKNL*DFSDQCYPSLQHINF  13703

Range 10: 13251 to 13433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 30/61(49%) 0/61(0%) Plus/Minus
Query      311  QR*CSSQDL*KFLRY*KFF*ACHPFRVWLPQYPLDADPLKVEIGEANNLPVPSRTHSHPAK  493
                QR* SS+D *+FL Y*KF     PF     Q P +ADP  VE     NLP  SRTH+  A+
Subject  13251  QR*YSSRD**RFLLY*KFSLTYRPFLA*PLQNPPNADP*TVEKDGEYNLPDLSRTHTRLAE  13433

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 13788 to 13937 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.6 bits(98) 0.0 20/50(40%) 0/50(0%) Minus/Plus
Query       93  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKEEY  242
                A  +S EL  L   +M +T  +++  F LA  Q+++T+STS +TE KE+Y
Subject  13788  AHIVSEELMKLQQSIMHDTSNEAIAAFVLACFQVVVTYSTSEETELKEQY  13937

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 1

Range 1: 13698 to 13841 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.9 bits(101) 0.0 22/48(46%) 0/48(0%) Minus/Plus
Query       99  ATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQLMLTFSTSPDTESKE  242
                A  I+  L  LC +VMG  D  + T+FFL ++Q+  TF TS  TE KE
Subject  13698  AMKINAALMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKE  13841

Nucleotide Sequence (388 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
388

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
233.1 818.5 26% 9.07e-61 60% NC_016509
111.7 111.7 27% 3.316e-24 43% NC_029783
109.9 109.9 26% 1.17e-23 47% NC_022072
103.9 171.6 30% 7.051e-22 36% NC_004667
69.8 69.8 24% 1.31e-11 34% NC_005065

Alignments

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 1895 to 2224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.1 bits(506) 0.0 105/110(95%) 0/110(0%) Plus/Plus
Query        2  IAVKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                +A KGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTL KKNKCVVTVALSA AKESLTRAFPELFITFLDSVSSSHSLCNAV SC
Subject   1895  MAAKGGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSC  2224

Range 2: 1894 to 2223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 94/110(85%) 0/110(0%) Minus/Minus
Query        1  HDRTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLATRLCCPPFTAM  330
                H+RTALHKL ELETLS+KV+KSSGKALVKLSLA ALSATVTTHLFFF +VSSFIMNSS+IFSSRCVT VLPSF+TS LAIVDTIPSNRSS* +ALLTLATRLCCPP  A+
Subject   1894  HERTALHKLCELETLSKKVIKSSGKALVKLSLATALSATVTTHLFFFPSVSSFIMNSSEIFSSRCVTSVLPSFSTSRLAIVDTIPSNRSS*LSALLTLATRLCCPPLAAI  2223

Range 3: 1895 to 2215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 68/107(64%) 0/107(0%) Minus/Minus
Query        2  DGVA*TVRTRNTIKKSYEKFWKSSRQALLGPCTKRHGHNAFILLLQCVLLHHEQFRYLLVKMRHQSATFLQHKPVGYC*YYPLE*IFLIQRITHASH*TLLPTFYRN  322
                + V *TVR RNTI+K Y+KFWKSSRQ      TKR+ H+A ILL QC+LLHHEQ R LLV++RHQ A F Q+ PV  C*YYP E*IFLI+RIT+A H  LLP F R+
Subject   1895  NSVT*TVRARNTIQKGYKKFWKSSRQTFFSHSTKRYRHDALILLPQCILLHHEQLRNLLVEVRHQCAPFFQY*PVSNC*YYPFE*IFLIERITYACHQALLPPFSRH  2215

Range 4: 1900 to 2211 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 63/104(61%) 0/104(0%) Plus/Plus
Query        7  GKRWATESSG*RE*CVESRRSIRGDSINNSQQACVEGR*HFGDAS*REDI*TVHDXXXXXXXXXXMRCDRGA*CRGQGELDESFSRTFHNFS**CFEFSQFMQR  318
                G R ATE  G R+*C +S RSIR DSINN   A  E R H GDA  RED   VHDEGG+ GEEE*+R D  A*C G  + DESFSRTF+N   *CFE +QFM R
Subject   1900  G*RGATEPGGKRK*CAQSGRSIRRDSINNC*PASTERREHTGDAPRREDFGAVHDEGGYTGEEE*VRRDGSA*CCG*RKFDESFSRTFYNLFG*CFELAQFM*R  2211

Range 5: 1899 to 2060 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 34/54(63%) 0/54(0%) Plus/Plus
Query        6  R*KVGNRV*WLA*VMR*IKKIYSRG*YQQ*PTGLC*RKVALW*RILTRRYLNCS  167
                R K GNR  W A*VMR I+KIYS+G*YQQ  TG  *+K A W*R  TRR+ +CS
Subject   1899  RLKGGNRAWWQA*VMRSIRKIYSKG*YQQLLTG*Y*KKGAHW*RTSTRRFRSCS  2060

Range 6: 2091 to 2210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 24/40(60%) 0/40(0%) Plus/Plus
Query      198  INAL*PWRLVQGPRRA*RELFQNFS*LFLIVFRVLTVYAT  317
                I+A *  RLV   ++ *RELFQNF * F IVFR  TVY T
Subject   2091  ISAS*R*RLVLWLKKV*RELFQNFL*PFWIVFRARTVYVT  2210

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 2445 to 2762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.7 bits(239) 0.0 46/106(43%) 0/106(0%) Plus/Plus
Query       14  GGQQSLVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                GG  S +AS+S AL  ED+F+G+VS++AN++ LKEGS ++  LD  ++ +   K + L  K    +  +L+   K  LT+ FPEL + F DSV SSH +CNAV  C
Subject   2445  GGSNSFMASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPSVTINPSLTTTEKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMC  2762

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 2063 to 2365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.9 bits(235) 0.0 47/101(47%) 0/101(0%) Plus/Plus
Query       29  LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                ++ASV+NALNQE+++  +VS IANRL LK+ S+L+ HLD ++ E+F  ++  + +K        L    K+ +  AFPEL ITFLDSV SSH + NAV  C
Subject   2063  VLASVANALNQEEVYSSVVSGIANRLALKDQSSLLAHLDNRLCEMFAQRDALIREKPNHRCDTMLKPSEKDMIKEAFPELTITFLDSVRSSHPVANAVRGC  2365

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 3

Range 1: 1344 to 1646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.9 bits(222) 0.0 45/101(45%) 0/101(0%) Plus/Plus
Query       29  LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAVLSC  331
                ++ASV+NALNQE+++  +VS+I NRLVL++ S L++HLD K+ ++F  ++  + +K      V L    +E L   FPEL I F DSV SSH   NA+ SC
Subject   1344  ILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPREREKLRELFPELSIQFSDSVRSSHPFANAMRSC  1646

Range 2: 1349 to 1639 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 35/97(36%) 0/97(0%) Minus/Minus
Query       34  RTALHKL*ELETLSRKVMKSSGKALVKLSLAPALSATVTTHLFFFSNVSSFIMNSSDIFSSRCVTKVLPSFNTSLLAIVDTIPSNRSS*FNALLTLA  324
                R AL   * L T S   ++SSGK+ +  SL+     T      F   ++S   N S  F S+  +    S NTSLL I++T     SS*  AL T A
Subject   1349  RMALANG*LLLTESENCIESSGKSSLSFSLSRGFRNTSHLCEGFSRIIASL*ENISHNFVSKWESNADWSLNTSLLVILETTDE*TSS*LRALATEA  1639

Range 3: 14170 to 14217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 8/16(50%) 0/16(0%) Minus/Minus
Query      303  IVLGVFGMIGRRCINC  350
                IV   F ++GRRC+ C
Subject  14170  IVATSFAIVGRRCVRC  14217

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 573 to 848 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(147) 0.0 31/92(34%) 0/92(0%) Plus/Plus
Query       47  NALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLEKKNKCVVTVALSAGAKESLTRAFPELFITFLDSVSSSHSLCNAV  322
                + LN E ++  ++  + +RL  KE S L  H+D  +  L   KED L  K +C ++  +   A+  L  AFPEL I +  S  S H +C  V
Subject    573  SCLNLETMYGELLKQVTSRLNFKENSDLFLHVDSSLKTLLKEKEDVLSHKFQCSISANIDQDARSILDSAFPELQIKYTTSSRSEHPMCYCV  848

Nucleotide Sequence (345 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
345

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
132.1 251.6 43% 1.959e-30 35% NC_022072
231.5 917.3 30% 2.292e-60 56% NC_016509
144.5 304.2 30% 3.696e-34 31% NC_004667
128.4 208.8 34% 2.486e-29 47% NC_029783
95.5 95.5 29% 2.122e-19 42% NC_009992

Alignments

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 8409 to 8726 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 56/106(53%) 0/106(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDISA  318
                R+  A + L  +L  FV+  S + +Y LMVKAD KPKLD TPL +YVTGQNIVYHD  +TA+FS IFT  VERLK+V+    + YHGM  D  ++ +   LGDI A
Subject   8409  RTPAAYRGLKGKLYDFVFHPSLLLKYTLMVKADVKPKLDDTPLYKYVTGQNIVYHDSCVTALFSCIFTAVVERLKFVVSDNWVFYHGMDIDSLAQRISADLGDIRA  8726

Range 2: 8486 to 8725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 38/80(48%) 0/80(0%) Minus/Minus
Query       78  AEMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL  317
                A MSP  +L    + S+ +PW    L  +T FNLST  VK+ EN AV   S  T+F PVTY  +GV SN G  SAFT+S+
Subject   8486  ALMSPRSALIL*ARLSISMPW*NTQLSLTTNFNLSTTAVKIHENNAVTHES**TMF*PVTYLYSGVSSNLGFTSAFTISV  8725

Range 3: 8493 to 8690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 23/66(35%) 0/66(0%) Minus/Minus
Query       85  TKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYH  282
                ++ +  H MV+      H  QP     ED  K R  + ++++N+L+  VL+QR  IQL L I L+H
Subject   8493  SQAVDIHAMVKHPVIAHHELQPFHHCREDTRKQRCDARIMINNVLTSDVLVQRCVIQLGLHISLHH  8690

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 6

Range 1: 7869 to 8183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.5 bits(499) 0.0 96/105(91%) 0/105(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS  315
                RSSMAKQSLWARLRSFVYDLSAMTRYKLMVK+DAKPKLDSTPLQQY+TGQNIVYHDRAITAMFSHIFTQAVERLKYVL ++VLAYHGMST+DFSREV +RLGD+S
Subject   7869  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVS  8183

Range 2: 7871 to 8182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 89/104(86%) 0/104(0%) Minus/Minus
Query        3  EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAIED  314
                + SPSLS TSRLKSSVDIPWYAKT  CSTYFNLSTACVKMCENIAVIALSWYT+FCPV YCC GVESNFGLAS  T+SL*RVIAD+S T +RKRAHNDCLAIED
Subject   7871  DTSPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIED  8182

Range 3: 7869 to 8177 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 61/103(59%) 0/103(0%) Minus/Minus
Query        1  VPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP  309
                +PQS++NL+T+V   HT+V *D R+QHIFQPLDRL +DV*KHR YS ++VHN+L   VLL R  +QLR  + L H+L+T H  QI+ +R Q SPQ LLSHRRP
Subject   7869  IPQSITNLATEVFC*HTVVC*DFRMQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRP  8177

Range 4: 7870 to 8175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.5 bits(261) 0.0 57/102(56%) 0/102(0%) Plus/Plus
Query        2  GLLWLSSHCGLACARSYMICQR*HVTSSW*RQMLSRSWIQPRCSST*PDRILCTTTGL*RRCFHTSSHRRSRG*NMCCNRES*RTMVCLLMTLVERLERDWG  307
                GLLWLSS CGL C     IC++* V S W  Q  +RSW     SST   + LCT   L* RCFHTS  +RSRG*NMCC R+S* T VC   T V RL  DWG
Subject   7870  GLLWLSSRCGLVCGLLSTICRQ*LVISLWLSQTPNRSWTPRLYSSTLQGKTLCTMIEL*LRCFHTSLRKRSRG*NMCCIRKS*HTTVCQQKTSVARLVIDWG  8175

Range 5: 7871 to 8176 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 57/102(56%) 0/102(0%) Plus/Plus
Query        3  VFYG*AVIVGSLALVRI*FVSDDTLQAHGKGRC*AEVGFNPVAAVRNRTEYCVPRQGYNGDVFTHLHTGGREVEICAAIESLSVPWYVY**L*SRG*RETGG  308
                VFYG*AV+VGS A+  +  V +D+L A+G  R   EVG +   AV  R ++CVP   YN DVFTHL+  GREVEICAA ESLS+P YV   L SRG   TGG
Subject   7871  VFYG*AVVVGSFAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPRYVNRRLQSRGW**TGG  8176

Range 6: 7870 to 8175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 58/102(57%) 0/102(0%) Minus/Minus
Query        2  PPVSL*PLD*SHQ*TYHGTLRLSIAAHISTSRPPV*RCVKTSPL*PCRGTQYSVRLRTAATGLNPTSA*HLPLP*ACNVSSLTNHIRTSASEPTMTA*P*KT  307
                PPV   P D*S   TY G LRLS AAHISTSRP  *RCVKTS L*   GTQ      TA    +PTS   L  P*A N S  T+  + +A+EPT TA*P*KT
Subject   7870  PPVYHQPRD*SLLLTYRGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQKTANEPTTTA*P*KT  8175

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 3

Range 1: 7345 to 7656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 63/104(61%) 0/104(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDI  312
                R+  A +SL   L SFV+  S +T Y LMVKAD KPKLD+TPL +YVTGQNIVYHDR +TA+FS IFT  VERLKYV+  R L YHGM T + +  +R  LGDI
Subject   7345  RAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAALRNNLGDI  7656

Range 2: 7353 to 7655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 54/101(53%) 0/101(0%) Minus/Minus
Query        9  MSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYTNERKRAHNDCLAI  311
                MSP L L +   S+V IPW    L  +TYF  ST  VKM E  AV  LSW TIFCPVTY  NGV SN G  SAFTMS+* V  D   TNE K    D  A+
Subject   7353  MSPKLFLNAAANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTHLSW*TIFCPVTYFDNGVLSNLGFTSAFTMSV*EVNIDG*KTNEPKARLRDL*AL  7655

Range 3: 7345 to 7656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 32/104(31%) 0/104(0%) Minus/Minus
Query        1  DVPQSLSNLSTKVISRHTMVR*DSRLQHIFQPLDRLCEDV*KHRRYSPVVVHNILSGYVLLQRG*IQLRLSICLYHELVTCHR*QIIYERAQASPQ*LLSHRRP  312
                DVPQ +   S ++ S H +V     + ++F  L    ++  K R Y+P+VV  IL  YVL Q   +QL   +C +HE +     ++  +R  +  + L+S R P
Subject   7345  DVPQIVPQCSRQLRSVHPVVEEPPFVHYVF*ALYARSKNARKKRSYAPIVVDYILPRYVLRQWRIVQLGFYVCFHHERIRSQHRRMKDKRT*SPLERLVSVRCP  7656

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 8176 to 8472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 55/99(56%) 0/99(0%) Plus/Plus
Query       19  QSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRERLGDIS  315
                +SL       V+DL+A+TRY LMVKAD KPKLD++ +  YV GQNIVY D+   A FSHIF Q  ERLKYV + +VL + G + ++F+ EV ERLGDIS
Subject   8176  KSLLRECAKNVFDLTALTRYTLMVKADGKPKLDASVMTNYVAGQNIVYSDKVSIARFSHIFQQVAERLKYVCRGKVLFFCGSTIENFASEVEERLGDIS  8472

Range 2: 8205 to 8471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 42/89(47%) 0/89(0%) Minus/Minus
Query       48  EMSPSLSLTSRLKSSVDIPWYAKTLDCSTYFNLSTACVKMCENIAVIALSWYTIFCPVTYCCNGVESNFGLASAFTMSL*RVIADKSYT  314
                ++SP  S TS  K S+  P    TL   TYF  S  C KMCEN+A+  LS YTIFCP T       S+ GL SA TMS+  V A +S T
Subject   8205  DISPKRSSTSDAKFSIVEPQKNSTLPLQTYFKRSATC*KMCENLAIDTLSEYTIFCPAT*LVITEASSLGLPSALTMSVYLVKAVRSKT  8471

Plum bark necrosis and stem pitting-associated virus, complete genome

Sequence ID: Length: 14214 Number of Matches: 1

Range 1: 7815 to 8111 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 42/99(42%) 0/99(0%) Plus/Plus
Query        1  RSSMAKQSLWARLRSFVYDLSAMTRYKLMVKADAKPKLDSTPLQQYVTGQNIVYHDRAITAMFSHIFTQAVERLKYVLQSRVLAYHGMSTDDFSREVRE  297
                R+ + K +L   L +     S + R+K+MVKAD K KLD T      +GQNIVYH R +  +FS +F Q  ERLK++L+  V  +HG S DDF++ +R+
Subject   7815  RTPLGKSALARDLEASPDWRSDLNRFKIMVKADMKSKLDGTAETSLPSGQNIVYHRRNVCLLFSSVFQQLTERLKFLLKPHVKLFHGCSLDDFAQSLRD  8111