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Nucleotide Sequence (477 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
48
96
144
192
240
288
336
384
432
477

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
239.8 932.7 27% 1.725e-61 55% KY352403.1
201.3 318.9 32% 6.721e-50 43% KF688741.1

Alignments

Alternaria alternata partitivirus 1 isolate Avi1 segment RNA2, complete sequence

Sequence ID: KY352403.1 Length: 1680 Number of Matches: 8

Range 1: 378 to 734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.8 bits(517) 0.0 106/119(89%) 0/119(0%) Minus/Plus
Query       46  SDRRLISVKPSIPARFSYEEFLHCSALQLYQRMENVKFDALGIKPPAPNRIPLPRNLRVFQPLWSILANIGTVDDDELGVQYIPDAVXXXXXXXXXPHDIEGLLSCTLYDWKTSWNSVL  402
                S +RLI+VKPSIP+RF+YEEFLHCSALQLYQR+ENVKFDALG+KP APNRIPLPRNLRVFQP+WSILANIGTVDDDEL  QYIPDAVLPDSDDLDS HDIEGLLSCTLYDWK+SWNSVL
Subject    378  SYQRLINVKPSIPSRFTYEEFLHCSALQLYQRIENVKFDALGVKPAAPNRIPLPRNLRVFQPIWSILANIGTVDDDELRAQYIPDAVLPDSDDLDSEHDIEGLLSCTLYDWKSSWNSVL  734

Range 2: 386 to 625 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.0 bits(297) 0.0 62/80(78%) 0/80(0%) Plus/Minus
Query      155  MYWTPSSSSSTVPMFARIDQRG*KTRRFLGSGIRFGAGGLIPSASNLTFSIRWYSWRAEQWRNSSYEKRAGIEGFTEMRR  394
                +Y   SSSSSTVPMFARIDQ G KTRRFLGSGIRFGA G  P+ASNLTFSIR Y+WRAEQ RNSSY KR GIEG T +RR
Subject    386  IY*ARSSSSSTVPMFARIDQMGWKTRRFLGSGIRFGAAGFTPNASNLTFSIR*YNWRAEQ*RNSSYVKRLGIEGLTLIRR  625

Range 3: 690 to 767 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 16/26(62%) 0/26(0%) Plus/Minus
Query       13  VFGRLTGGASGKDRIPRGLPVIQSTT  90
                V  R TG +  KD IP GLPV+QSTT
Subject    690  VLVRGTGFSGSKD*IPGGLPVVQSTT  767

Range 4: 406 to 753 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 64/116(55%) 0/116(0%) Plus/Minus
Query       27  DGWCERQGQNSTRSSSHTEYNLEVPQYHEGNLDRQNQVEQHPVCTGHQVHHHLRFLCSRELTRGAERHGGFWEAGFDSGQEV*FQVHQI*HSPYVGTVGERSNGEIPHMRNEQESR  374
                DG+  +QG NS R+SS TEYN    +YH  N DR+NQ EQ  V T   VHHH ++LC RELTR A RHGGF  A +DS Q+V    HQ *   YV T+GERSN EI H  N  ESR
Subject    406  DGFLGQQGLNSRRTSSRTEYN*VDLRYHVRNPDRRNQEEQRQVYTERAVHHHRQYLCLRELTRWAGRHGGFSGAEYDSEQQVSRPTHQT*RFQYVDTIGERSNEEILHT*NG*ESR  753

Range 5: 378 to 626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 47/83(57%) 0/83(0%) Plus/Minus
Query      154  YVLDTKFIIIYGSYVREN*PEGLKDTEVSGKRDSIRGRRFNSKCIKFDILHTLVQLESGAMEKFLI*ETSRNRGFHRDETTVG  402
                Y+L  +FIII  +YV EN*P+GL+DTEVS +R++IR  RF+++ IK D+ +TL+QLESGAM+KF I ET+RNRG + D+  +G
Subject    378  YILSAQFIIIDSTYVCEN*PDGLEDTEVSRERNTIRSSRFHAQRIKLDVFNTLIQLESGAMKKFFIRETARNRGLNIDQALIG  626

Range 6: 689 to 730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Minus
Query       50  TEFHEVFQSYRVQL  91
                TEF E FQSYRVQL
Subject    689  TEFQEDFQSYRVQL  730

Range 7: 403 to 768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 73/122(60%) 0/122(0%) Minus/Plus
Query       12  NPRFLLVSHMRNFSIAPLSNCTNVWRMSNLMHLELNLLPRIESRFPETSVSFSPSGQFSRT*EP*MMMNLVSSTYRMLFYXXXXXXXXXXXLRDF*VVLCMTGRPRGILSLPLAPPVKRPNT  377
                +PRFL VS M+NF IAPLSNC NV + S+LM    NLL RI  R  ETSVS SPSGQFS+T*   MMMN   S Y  LF+LI TI IP MI + + VVLC TG P GI SL    PV R NT
Subject    403  SPRFLAVSRMKNFFIAPLSNCINVLKTSSLMRWA*NLLLRIVFRSRETSVSSSPSGQFSQT*VLSMMMNCALSIYLTLFFLIPTIWIPNMISKVYLVVLCTTGSPPGIQSLLPEKPVPRTNT  768

Range 8: 407 to 754 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 65/116(56%) 0/116(0%) Minus/Plus
Query       26  LDSCSFLI*GISPLLRSPTVPTYGECQI*CTWN*TSCPESNPASQKPPCLSAPLVNSREHRNRR***TWCPVHTGCCST*F*RSRFPS*Y*GTSKLYSV*LEDLVEFCPCRSHHPS  373
                LDS  F +* IS LLRSP V TY + Q+*C    T C ES  A +KPPCL A LVNSR+HR  R***T   V+T  CS+*F RS F +*Y  ++ LYSV LE L+EF PC   +PS
Subject    407  LDS*PFHV*RISSLLRSPIVSTY*KRQV*CVGRETCCSESYSAPEKPPCLPAHLVNSRKHRYCR***TARSVYT*RCSS*FRRSGFRT*YRRST*LYSVRLEVLLEFSPCCPRNPS  754

Botryosphaeria dothidea partitivirus 1 isolate LW 1 segment RNA 2 putative coat protein (CP) gene, complete cds

Sequence ID: KF688741.1 Length: 1623 Number of Matches: 3

Range 1: 349 to 699 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 88/117(75%) 0/117(0%) Minus/Plus
Query       46  RRLISVKPSIPARFSYEEFLHCSALQLYQRMENVKFDALGIKPPAPNRIPLPRNLRVFQPLWSILANIGTVDDDELGVQYIPDAVXXXXXXXXXPHDIEGLLSCTLYDWKTSWNSVL  396
                ++L+SVKPS+P RFS  E+ H SALQLYQR+E VKFD+LGIKP AP RIPLPRNLRVF P+WS+LANIGTVDDD+L V YIPD +LPDSDDLDS HD+EGLL+CTLYDWK+SW  VL
Subject    349  QKLVSVKPSLPNRFSLAEYRHASALQLYQRIEAVKFDSLGIKPSAPTRIPLPRNLRVFPPIWSVLANIGTVDDDDLRVVYIPDGILPDSDDLDSEHDVEGLLNCTLYDWKSSWEDVL  699

Range 2: 360 to 581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 46/74(62%) 0/74(0%) Plus/Minus
Query      164  TPSSSSSTVPMFARIDQRG*KTRRFLGSGIRFGAGGLIPSASNLTFSIRWYSWRAEQWRNSSYEKRAGIEGFTE  385
                T  SSSSTVPM AR DQ G  TRRF G GI  GA GLIP  SNLT SIRWYS  AE  R S+ E R G  G T+
Subject    360  TRRSSSSTVPMLARTDQMGGNTRRFRGKGILVGAEGLIPRESNLTASIRWYS*SAEACRYSARENRFGRLGLTD  581

Range 3: 640 to 702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/21(43%) 0/21(0%) Plus/Minus
Query       43  GKDRIPRGLPVIQSTT*KSLN  105
                G+D  PR  PV++S   +SL+
Subject    640  GQDIFPRRFPVVESAVQQSLD  702