Nucleotide Sequence (345 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
126.2 | 248.0 | 31% | 8.369e-32 | 49% | KJ819546.1 | |
69.8 | 103.9 | 30% | 4.387e-15 | 42% | HE717021.1 | |
69.8 | 103.9 | 30% | 4.387e-15 | 42% | NC_017003.1 | |
69.8 | 106.6 | 29% | 6.758e-16 | 45% | KP900910.1 | |
62.0 | 102.0 | 28% | 1.531e-14 | 41% | KP900916.1 |
Alignments
Cytospora ribis mitovirus 1 RNA dependent RNA polymerase (RdRp) gene, partial cds
Sequence ID: KJ819546.1 Length: 1629 Number of Matches: 4
Range 1: 874 to 1128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 52/85(61%) | 0/85(0%) | Minus/Minus |
Query 3 GVECGLHKSILSHGGIGIELAKNTFVDGINVSPISFKEIQVSHQDLSAWAAFAKKFDLS*DRQARVLGFGYLARRKSFKKMNHAL 257 GV C L KS+LS GIG+E AK TF+ G++VSP+S KE+ V+ DLSA++AF++K +L+*+R +R+LGFGYLARRKSF+K+NHAL Subject 874 GVSCSLAKSVLSPKGIGLEFAKKTFIRGVDVSPLSLKELSVALGDLSAFSAFSQK*NLN*ERVSRLLGFGYLARRKSFRKLNHAL 1128
Range 2: 1138 to 1206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 13/23(57%) | 0/23(0%) | Minus/Minus |
Query 266 YAVLGDDLVISH*KIARRYLKIL 334 YAVLGDDLV+ +A +YLK++ Subject 1138 YAVLGDDLVLGSKAVADKYLKLM 1206
Range 3: 872 to 1129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 42/86(49%) | 0/86(0%) | Plus/Plus |
Query 1 CKA*FIFLKDLRLAR*PKPSTLACLSQLRSNFLANAAHAERS*WDTCISLNEIGDTLIPSTNVFFANSXXXXXXXXXXXXXXHSTP 258 C+A F KDLRLAR*PKP+ LSQLR +F A A +S T S E G+T P VF ANS PIP R D H TP Subject 872 CRAWLSFRKDLRLAR*PKPNKRETLSQLRFHF*EKAEKALKSPRATLNSFKERGETSTPRMKVFLANSSPIPFGDRTDFANEHDTP 1129
Clitocybe odora virus complete genome, isolate C Holm
Sequence ID: HE717021.1 Length: 3765 Number of Matches: 2
Range 1: 1826 to 2056 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 32/77(42%) | 0/77(0%) | Minus/Plus |
Query 27 GVECGLHKSILSHGGIGIELAKNTFVDGINVSPISFKEIQVSHQDLSAWAAFAKKFDLS*DRQARVLGFGYLARRKS 257 GVEC L KSI+SH GIG+E AK TF G NVSP E+ + +D A + K + L V GFG+ + ++ Subject 1826 GVECNLAKSIMSHRGIGLEFAKKTFFQGFNVSPSPLTEVLAALKDPIALLQYGKIYGLKFVDLLTVAGFGFRVKSRA 2056
Clitocybe odora virus, complete genome
Sequence ID: NC_017003.1 Length: 3765 Number of Matches: 2
Range 1: 1826 to 2056 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 32/77(42%) | 0/77(0%) | Minus/Plus |
Query 27 GVECGLHKSILSHGGIGIELAKNTFVDGINVSPISFKEIQVSHQDLSAWAAFAKKFDLS*DRQARVLGFGYLARRKS 257 GVEC L KSI+SH GIG+E AK TF G NVSP E+ + +D A + K + L V GFG+ + ++ Subject 1826 GVECNLAKSIMSHRGIGLEFAKKTFFQGFNVSPSPLTEVLAALKDPIALLQYGKIYGLKFVDLLTVAGFGFRVKSRA 2056
Rhizoctonia solani mitovirus 15 isolate K IL s02 3 25b RNA dependent RNA polymerase gene, complete cds
Sequence ID: KP900910.1 Length: 3901 Number of Matches: 2
Range 1: 2527 to 2739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 32/71(45%) | 0/71(0%) | Minus/Plus |
Query 45 GVECGLHKSILSHGGIGIELAKNTFVDGINVSPISFKEIQVSHQDLSAWAAFAKKFDLS*DRQARVLGFGY 257 GV+CG+ KS+LS G IE AK TF G ++SPI E ++ L+ +FA+K+ LS + RVLG+GY Subject 2527 GVQCGIAKSLLSPTGTAIEFAKRTFWMGKDISPIPLLEFIAANLTLADAISFARKYSLSFPQLLRVLGYGY 2739
Rhizoctonia solani mitovirus 7 isolate k 4 186b RNA dependent RNA polymerase gene, partial cds
Sequence ID: KP900916.1 Length: 3085 Number of Matches: 2
Range 1: 1441 to 1653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 29/71(41%) | 0/71(0%) | Minus/Plus |
Query 45 GVECGLHKSILSHGGIGIELAKNTFVDGINVSPISFKEIQVSHQDLSAWAAFAKKFDLS*DRQARVLGFGY 257 GV GLHKS++S GG +E AK TFV G +VSP+ E S S F +K++L+ + G+GY Subject 1441 GVGIGLHKSLISAGGTALEFAKRTFVHGKDVSPVPITEWIASLNGPSCAVEFIRKYNLTLALFLKAAGYGY 1653