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Queries

Nucleotide Sequence (465 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
465

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
322.8 322.8 33% 1.74e-98 94% ABH07008

Alignments

putative replicase [Grapevine virus A]

Sequence ID: gb|ABH07008.1| Length: 1710 Number of Matches: 1

Range 1: 159 to 312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
322.8 bits(826) 0.0 145/154(94%) 0/154(0%) Plus/Plus
Query        2  CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI  463
                CECVFIHDEVQYWSLDEMQRFLGSL+HANRVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGCSKT+DS+SRSWTITKLQT+GAHHIFSAVLGSFLTED+YKYDNFT+INPNDILRGRRGCKPLYLRARMI
Subject    159  CECVFIHDEVQYWSLDEMQRFLGSLEHANRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMI  312

Nucleotide Sequence (542 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
55
110
165
220
275
330
385
440
495
542

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
300.4 300.4 30% 5.683e-99 88% AFV73360

Alignments

MP [Grapevine virus A]

Sequence ID: gb|AFV73360.1| Length: 278 Number of Matches: 1

Range 1: 1 to 163 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
300.4 bits(768) 0.0 144/163(88%) 0/163(0%) Plus/Plus
Query       54  MSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT  542
                MS    QG K SS  LHEIKVFNVKRNTKDLETLNKALHRGD YETELIE+VFPRRTRKCVIH+ELVVKDGRVDCDLDI+D+GLD+VDEEE+PLYHVGCIVVALMPHGKNL GKVVVEVKDTRL+GP+SRISRSFMD+SKPISACADFPGYFISTTDLLNGYT
Subject      1  MSSEGSQGSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDILDSGLDDVDEEEYPLYHVGCIVVALMPHGKNLGGKVVVEVKDTRLKGPSSRISRSFMDLSKPISACADFPGYFISTTDLLNGYT  163

Nucleotide Sequence (342 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
342

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
155.6 155.6 29% 5.964e-44 80% AHC13281

Alignments

RNA-dependent RNA polymerase, partial [Grapevine virus A]

Sequence ID: gb|AHC13281.1| Length: 250 Number of Matches: 1

Range 1: 111 to 209 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.6 bits(392) 0.0 80/100(80%) 4/100(4%) Plus/Plus
Query       38  DLDR--VCWV-CLANVRANLMAFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHSASKHT  328
                DLD+    WV  +    ++  AFDRSQDEKILDME+EVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH  SK+T
Subject    111  DLDKWAKTWVEGMLGTDSDYKAFDRSQDEKILDMEIEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH-LSKNT  209

Nucleotide Sequence (619 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 4 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
62
124
186
248
310
372
434
496
558
619

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
360.9 360.9 29% 2.428e-111 94% AFV73358

Alignments

195 kDa replicase [Grapevine virus A]

Sequence ID: gb|AFV73358.1| Length: 1710 Number of Matches: 1

Range 1: 885 to 1062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
360.9 bits(925) 0.0 168/178(94%) 0/178(0%) Plus/Plus
Query       85  VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK  618
                VDK KADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEP+EVLTSFGFAGSGKSHWCQTILRSC+VEKTL+ISPRKVLKDDWVGKISK+HKVVTFEVAFMDDFGCKAIVIDEIGLLPPGY+DLVISVFRPSTL+LLGDPLQSSYHSKRDNV+LEASQED+FSR+KGALPYLCYSHRLPK
Subject    885  VDKAKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPVEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFRPSTLVLLGDPLQSSYHSKRDNVVLEASQEDVFSRIKGALPYLCYSHRLPK  1062