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Queries

Nucleotide Sequence (328 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
328

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
128.6 128.6 24% 2.298e-32 89% APT70074

Alignments

capsid protein [Alternaria alternata partitivirus 1]

Sequence ID: gb|APT70074.1| Length: 501 Number of Matches: 1

Range 1: 66 to 145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.6 bits(322) 0.0 71/80(89%) 0/80(0%) Plus/Plus
Query       87  YAEGNAAXXXXXXXXXXXRERILSPFKTDKYFHMVSSSYQRLISVKPSIPARFSYEEFLHCSALQLYQRMENVKFDALGI  326
                +AEGNAALLSYGLSLSGYRERILSPFKTDK+FH+VS+SYQRLI+VKPSIP+RF+YEEFLHCSALQLYQR+ENVKFDALG+
Subject     66  FAEGNAALLSYGLSLSGYRERILSPFKTDKFFHIVSASYQRLINVKPSIPSRFTYEEFLHCSALQLYQRIENVKFDALGV  145

Nucleotide Sequence (815 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
82
164
246
328
410
492
574
656
738
815

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
479.6 479.6 33% 1.317e-163 91% APT70073

Alignments

RNA-dependent RNA polymerase [Alternaria alternata partitivirus 1]

Sequence ID: gb|APT70073.1| Length: 571 Number of Matches: 1

Range 1: 262 to 532 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
479.6 bits(1233) 0.0 247/271(91%) 0/271(0%) Minus/Plus
Query        1  FGVEVKVMEMRYCIPLVKRFSDMFGKTPYPVGRNMTKALPFIIDNLLDDKKFGLVTDISKLDTSVGPDWIDWAFSQLKSFFDMGMTASSETRNSHVFDFLHYYFKRTPILLPSGQLIKKAGGVPSGSGFXXXXXXXXXXXXXVYSRLRMGHKKPDIIKMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLGQSIAAGLSNSFFDKCNYWMEELVTL  813
                +  EVKV+EMRYCIPL+KRFS+MFGKTPYPVGRNMTKALPFIID+LL DKKFGLVTDISKLDTSVGPDWIDWAFSQLKSFFD G T SSE R+S+VFDFLH+YFKRTPILLPSGQL+KKAGGVPSGSGFTQLVDTLVTTLATVYSRLRMGH K  I KMFVVGDDMATSVDHDFSIEEFSH M QLGFEINPSKVMFS+KGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQR LGQSIAAGLSNSFFDKCNYWMEELVTL
Subject    262  YPAEVKVIEMRYCIPLMKRFSEMFGKTPYPVGRNMTKALPFIIDHLLQDKKFGLVTDISKLDTSVGPDWIDWAFSQLKSFFDFGFTLSSERRDSNVFDFLHFYFKRTPILLPSGQLVKKAGGVPSGSGFTQLVDTLVTTLATVYSRLRMGHTKDQIFKMFVVGDDMATSVDHDFSIEEFSHIMGQLGFEINPSKVMFSNKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRILGQSIAAGLSNSFFDKCNYWMEELVTL  532

Nucleotide Sequence (365 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
365

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
124.0 124.0 33% 1.775e-30 53% APT70074

Alignments

capsid protein [Alternaria alternata partitivirus 1]

Sequence ID: gb|APT70074.1| Length: 501 Number of Matches: 1

Range 1: 248 to 368 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.0 bits(310) 0.0 64/121(53%) 1/121(1%) Plus/Plus
Query        4  LKKEELIRRISQAKRNASFVR*AVDDGRAEVVNDRVYLYPEVSVDVVNKA-TSKSDYLEINGKWYNVGLPNSELKKLPGYKLEGDYLTEVEQLMDQARSAKRERITPRFDPAYEPTSYKIS  363
                +KK++LIRRI+ AKRNA+ V  A+DDGRA ++++RVY YP V V  V+ A  +++DY +I+ KWY+ GL  + ++K   YK E  YL EV +LM QA++AKRERITP  D AY+P SY IS
Subject    248  VKKQDLIRRIATAKRNANSVSSAIDDGRAVLLDNRVYFYPVVDVKEVDAADKNRADYEQIDDKWYHTGLDPTAVRKTTSYKTETGYLEEVNELMKQAKAAKRERITPILDSAYKPESYTIS  368