Nucleotide Sequence (305 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
68.4 | 116.2 | 32% | 3.121e-10 | 38% | LC075489.1 |
Alignments
Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052
Sequence ID: LC075489.1 Length: 4455 Number of Matches: 2
Range 1: 2150 to 2392 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 32/81(40%) | 0/81(0%) | Minus/Plus |
Query 12 VMVVSDGHRKQGLDFRLRDSAIPACINIKNNVIEATTFREATHVYIRTVMSPSTESEVTFSCFGVSLSCRLLQGVENTYVY 254 V+ SD + +D RLRD +PACI I AT F +A +V + PS++ EV S FGV+++ +LQGV +Y Y Subject 2150 VISKSDARGLREMDIRLRDGYVPACIAKSKGGILATEFADAEYVLMDVSEGPSSDKEVVVSIFGVAMTGIMLQGVTKSYFY 2392
Range 2: 2119 to 2382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 33/88(38%) | 0/88(0%) | Plus/Minus |
Query 22 VFSTPCSSLQDKDTPKQLNVTSDSVDGDITVLIYTCVASLKVVASITLFLIFMQAGIAESLSLKSSPCFRCPSDTTITVAGSQLCMVS 285 +F TPC+ + TP TS S +G I T AS VASI L MQAG SLSL S SD IT+ + ++S Subject 2119 LFVTPCNMIPVIATPNIDTTTSLSEEGPSDTSISTYSASANSVASIPPLLFAMQAGT*PSLSLMSISRNPLASDLEITIMSIPILVLS 2382