Queries
Nucleotide Sequence (490 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
298.0 | 1027.3 | 27% | 3.803e-80 | 45% | NC_001948 | |
90.4 | 220.1 | 46% | 6.751e-29 | 37% | NC_010295 | |
91.3 | 227.0 | 41% | 3.587e-29 | 38% | NC_029086 | |
79.0 | 135.9 | 32% | 1.701e-25 | 36% | NC_005343 | |
86.8 | 240.9 | 34% | 9.091e-26 | 41% | NC_009764 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.0 bits(644) | 0.0 | 119/163(73%) | 0/163(0%) | Minus/Plus |
Query 2 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH 490 IK+KTCRFG NTCKYL SFGF V SD +D V++GSPF LDVEGVLICFGKEAVDLAVAHNS+FKLPCEVRGSTFNVVTLLKSRDPT ED+HWFY+AATRHR KLIIMQ DAF A C+LG +HNSI+ WLGHW + E+V+ +FR Q+ + +R ALQGR+ Subject 6917 IKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRY 7405
Range 2: 6928 to 7401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.7 bits(447) | 0.0 | 102/158(65%) | 0/158(0%) | Plus/Minus |
Query 6 RPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQV 479 RPCNA R C LN T S + QCPSQ MELW P+ Q A KAS C+II+ CLVAA *NQCLSS VGSLDF VTTL VEP TSQGNL SELCATARSTAS PK + TPSTSS KGDP T S SL T KPK+ RYLQV PNLQV Subject 6928 RPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQV 7401
Range 3: 6929 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.4 bits(370) | 0.0 | 78/159(49%) | 0/159(0%) | Plus/Minus |
Query 2 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPAS 478 VPSL* PP GN +LSPE G+FDFL+KC T+PMPKP VNG+MV AQ AGC KGI LH YQF + C +V+P+ I W+ Q Y+VK *T + T E +VRN I+ LL+KA + NI KRRP+N+ + ++T N++ + ++ A + KP S Subject 6929 VPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTS 7405
Range 4: 6990 to 7406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 87/139(63%) | 0/139(0%) | Minus/Plus |
Query 1 VIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 417 V W + L GRLL+ ML+ +AL RR I LRT S+ V+ VQ LT * +*+ Q Q+I G T Q N** CS+MPFQQPANWAKTI PLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGG YRDGT Subject 6990 VTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGT 7406
Range 5: 7018 to 7401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 59/128(46%) | 0/128(0%) | Minus/Plus |
Query 6 VAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGT 389 VAF T C* +++LW GG S CAQ +Q+ L* FN *R N E+ N R *ALVL K + DN+A RCL S+L G +P* H* LAWAL * S+ IQ T + T G+TGT Subject 7018 VAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGT 7401
Range 6: 7017 to 7406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 58/130(45%) | 0/130(0%) | Plus/Minus |
Query 1 CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKAT 390 C VPV P+V +L+++V *I + L Q++ ++ NAQAN W+YG P+ RLL+RHL A LS+ L + +T+AY L L S L+R* LN H+ * ++CAQ D PP+QS QH V KAT Subject 7017 CTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHLV*KAT 7406
Range 1: 4317 to 4631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 43/105(41%) | 0/105(0%) | Minus/Plus |
Query 170 TKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIM 484 T T RFG +TC L++ G SD+ D V F D EG++I G EAV+L AH+ F PC+ G T +VVTLL + +D Y++ TRH KL I+ Subject 4317 THTFRFGKSTCDLLKTLGVVATSDKEDIVSRHPAFNFDPEGLIIALGPEAVELLEAHSLPFLRPCQALGLTTSVVTLLTDKPLDEQDPVDAYISITRHTDKLNIL 4631
Range 2: 4637 to 4798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 26/54(48%) | 0/54(0%) | Minus/Plus |
Query 1 MPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 162 MP Q P ++ + L IG+ +L+ L +S LP+ GDNIH PHGG YRDGT Subject 4637 MPLQPPTDYTRIYSFLVIGVSCVTILYLLTRSTLPHVGDNIHHLPHGGCYRDGT 4798
Range 3: 4322 to 4627 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 38/102(37%) | 0/102(0%) | Plus/Minus |
Query 174 IISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQV 479 ++SL CLV * S L + VTT V PR QG K A+ STAS P + PS S K + T S+LS + P+ + QV PNL+V Subject 4322 MLSLSVCLVIEM*ASTGSCSSRGLSVSKVTTDVVSPRAWQGRRKGREWASNNSTASGPSAIIRPSGSKLKAGCLLTISSLSEVATTPRVFSRSQVDLPNLKV 4627
Elderberry carlavirus B isolate EBCVB, complete genome
Range 1: 6423 to 6734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 39/104(38%) | 0/104(0%) | Minus/Plus |
Query 170 KTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIM 481 +T RFG +TCK L+ GF+V+S+ D V+ G F ++ EG++I F E +L AHN +F PC +RG T VVT + + D ++D + A +K +I+ Subject 6423 ETRRFGKSTCKLLKGLGFEVNSNLEDTVLTGDIFTVEPEGLIIAFEHEVKELLRAHNCEFHEPCAIRGLTAEVVTFITASDCIAQDLSHLFYIALTRHTKKLIV 6734
Range 2: 6826 to 6906 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 20/27(74%) | 0/27(0%) | Minus/Plus |
Query 1 FLRKSNLPYSGDNIHQFPHGGHYRDGT 81 FL +SNLP+ GDNIH PHGG YRDGT Subject 6826 FLTRSNLPHVGDNIHSLPHGGRYRDGT 6906
Range 3: 6437 to 6649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 31/71(44%) | 0/71(0%) | Plus/Minus |
Query 255 NVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAP 467 NVTT V+PR +QG+ S+LCA + S S + PS S+ K P+ T S+ TSKPK +R L V P Subject 6437 NVTTSAVKPRIAQGS*NSQLCALSNSLTSCSNAIIRPSGSTVKISPVKTVSSRLELTSKPKPFRSLHVDLP 6649
Range 1: 6459 to 6713 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 31/85(36%) | 0/85(0%) | Minus/Plus |
Query 227 KTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSE 481 KT RFG +TC+ L SFGF+++S++ D ++ FE++ EG ++ F E D+ H +F+ C +RG TF VT + + E Subject 6459 KTKRFGNSTCELLNSFGFEIYSEKEDICLVRDFFEVEPEGTVVAFESEVKDILARHFVEFEDICSIRGKTFEEVTFFTASNSIPE 6713
Range 2: 6731 to 6943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 31/71(44%) | 0/71(0%) | Minus/Plus |
Query 1 STSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 213 S+S G +A+ ++MP P + +KT + GL + L L+ L +S LP GDNIH PHGG YRDGT Subject 6731 SSSA*PGTKASSLLLAQMPLSPPPDHSKTFLVAAAGLSLVLCLYTLTRSTLPGVGDNIHSLPHGGQYRDGT 6943
Range 1: 6371 to 6610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 41/80(51%) | 0/80(0%) | Minus/Plus |
Query 251 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLL 490 I TKT RFG NTC LQ FGF + SD+ D VVI S +VEG ++ G EA + + +K CEVRGSTF VVTL+ Subject 6371 ISTKTRRFGYNTCGLLQKFGFSIESDQEDEVVIQSSAVGEVEGEVLACGPEAELILTWYGYPYKKYCEVRGSTFEVVTLV 6610
Range 2: 6702 to 6863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 27/54(50%) | 0/54(0%) | Minus/Plus |
Query 1 MPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 162 MP P + K+I+ + G G+ LVL+ L +S LP GDNIH PHGG Y+DGT Subject 6702 MPLLPPPDNTKSILAIATGAGLALVLYTLTRSTLPQVGDNIHSLPHGGFYKDGT 6863
Range 3: 6671 to 6862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 26/64(41%) | 0/64(0%) | Plus/Minus |
Query 2 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASM 193 VPSL* PPCG *ILSP G + T P P+ M+L G GI++ Q A M Subject 6671 VPSL*NPPCGKE*ILSPTCGNVLLVNVYSTKANPAPVAIASMLLVLSGGGKSGITVDDNQLAPM 6862
Nucleotide Sequence (373 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
265.5 | 999.5 | 16% | 1.59e-70 | 59% | NC_001948 | |
109.7 | 155.6 | 15% | 1.24e-23 | 43% | NC_014821 | |
107.4 | 151.5 | 15% | 6.067e-23 | 41% | NC_003462 | |
101.4 | 101.4 | 29% | 3.768e-21 | 44% | NC_009892 | |
107.8 | 107.8 | 28% | 4.416e-23 | 44% | NC_018714 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6542 to 6910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 109/123(89%) | 0/123(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 371 D*ALS+WH + IMNNLVKALS FEFVGV+SVLKFPVV+HSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGRYIKPYSPGCAV GK+NILDEYLSV D SGFDVLFSDPYQNISIP+EA Subject 6542 D*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEA 6910
Range 2: 6685 to 6912 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 65/76(86%) | 0/76(0%) | Plus/Minus |
Query 1 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 228 CASLGMLMFW GSENSTSKPE S TDKYSSSI FP TAHPGE*GLMYLPVR GLSGTPAVKA K SSSE+SSLI+ Subject 6685 CASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 6912
Range 3: 6541 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 25/32(78%) | 0/32(0%) | Plus/Minus |
Query 277 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S 372 STL TPTNSN D ALTKLFII+ CQ LKA*S Subject 6541 STLKTPTNSNADNALTKLFIILK*CQILKA*S 6636
Range 4: 6542 to 6910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.4 bits(370) | 0.0 | 75/123(61%) | 0/123(0%) | Plus/Minus |
Query 3 CLPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 371 CL NADVLV V E H+KT I D Q+LIKYI P HCTPWR+ L+VPSC I VW+T C+SY+ L+L + LPY TFTTT M++ WKF+H NT+KLK Q FN*+IHN MPNT*GLI Subject 6542 CLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLI 6910
Range 5: 6543 to 6911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 75/123(61%) | 0/123(0%) | Plus/Minus |
Query 2 VPPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPN 370 VP EC*C G G R A QN K +T+THQVY SLALHTLE++A*CTFL D CL H L*KL + P++ APL YFYHY Y LEI*A KH QTQ T L*L+YS* S++AK+LRPN Subject 6543 VPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPN 6911
Range 6: 6544 to 6912 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 73/123(59%) | 0/123(0%) | Minus/Plus |
Query 1 LGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT 369 LGLK LA +YYE* S*S V +*VC C A ISS * *W*K* +KGA+ G F SF+S C+RQ S+RKVH AL SRVCSARE YT**V V +F F* A+L P+P+HQHS GT Subject 6544 LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGT 6912
Range 7: 6732 to 6911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 38/60(63%) | 0/60(0%) | Minus/Plus |
Query 2 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGRH 181 Q+V QT I QEGT S LQGVQC+G+ IYLMS C S IF VL C S+T T+TSAF RH Subject 6732 QQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRH 6911
Range 1: 6665 to 6985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 48/107(45%) | 0/107(0%) | Minus/Plus |
Query 24 VIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQN 344 V+IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN Subject 6665 VLIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQN 6985
Range 2: 6817 to 6984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 24/56(43%) | 0/56(0%) | Plus/Minus |
Query 25 FW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT 192 FW*GSEN KP D+YSS + P P L+ +P F SGTP V A+ Subject 6817 FW*GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTAS 6984
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6702 to 7022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 48/107(45%) | 0/107(0%) | Minus/Plus |
Query 24 VIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQN 344 V IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN Subject 6702 VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQN 7022
Range 2: 6854 to 7021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 23/56(41%) | 0/56(0%) | Plus/Minus |
Query 25 FW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT 192 FW*GSE P DKYSS + P P L+Y+P SGTP V A+ Subject 6854 FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTAS 7021
Range 1: 6482 to 6802 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 47/107(44%) | 0/107(0%) | Minus/Plus |
Query 24 VIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQN 344 V +M+ +V L + F ++ ++VH+VPGSGK++LIRE ++ + AF+ G PD PN+ GRYIK G G ILDEYLS +GFD FSDP+QN Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQN 6802
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6673 to 6990 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 47/106(44%) | 0/106(0%) | Minus/Plus |
Query 24 IIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQN 341 +IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN Subject 6673 LIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQN 6990
Nucleotide Sequence (472 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
324.6 | 1058.0 | 26% | 3.667e-88 | 49% | NC_001948 | |
143.6 | 143.6 | 32% | 1.108e-33 | 43% | NC_029087 | |
86.8 | 230.6 | 32% | 2.49e-32 | 42% | NC_018448 | |
83.1 | 241.2 | 33% | 5.178e-33 | 45% | NC_009892 | |
85.8 | 256.3 | 35% | 5.18e-33 | 47% | NC_005343 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 4022 to 4468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.6 bits(702) | 0.0 | 133/149(89%) | 0/149(0%) | Minus/Plus |
Query 3 GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 449 G+ G SDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDD CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQ Subject 4022 GLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQ 4468
Range 2: 4048 to 4470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.5 bits(501) | 0.0 | 112/141(79%) | 0/141(0%) | Plus/Minus |
Query 1 L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF 423 L* GSPA EMKASLR+ +H+SM PGGN+ TSSKITQ PAF P TFLRKTS VTTS PSFFDLPA TL SSISRS LIEFAKARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNF Subject 4048 L*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNF 4470
Range 3: 4040 to 4258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 40/73(55%) | 0/73(0%) | Plus/Minus |
Query 213 IIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT 431 IIHF+I FD*IC*S +K Y+F+ R HE LV ETL SPKCTKH+ QF ++ S ++ KPR I + LIT Subject 4040 IIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLIT 4258
Range 4: 4301 to 4468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 30/56(54%) | 0/56(0%) | Plus/Minus |
Query 3 LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIP 170 LT ITSK NES+TT +K+ *I V+RR+ L+ IK++ + SL +C+F KEN K IP Subject 4301 LTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP 4468
Range 5: 4030 to 4401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 62/124(50%) | 0/124(0%) | Minus/Plus |
Query 70 WEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL 441 W K**E+ K LA W + +*+ K ID AWYIWGW+EF +QE HE++* I N+C + FSKFNQK S NG**+ R VKEG +GC * FP*+S R +GW L + ** + SW+ Subject 4030 WRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWI 4401
Range 6: 4020 to 4262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 42/81(52%) | 0/81(0%) | Plus/Minus |
Query 209 THHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQTHP 451 ++HPF+D F*LNLLK +Q L+I+ Q S*+SC NS QPQMYQA+ SI * Q Q+AK L+ * SHH Q P Subject 4020 SYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGP 4262
Range 7: 4305 to 4469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 27/55(49%) | 0/55(0%) | Plus/Minus |
Query 2 FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QH 166 FD DHQQ K*K HY * I+ C QE HQ+ + QP L L *GK Q H Subject 4305 FDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GKPQKLLH 4469
Range 8: 4041 to 4190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 27/50(54%) | 0/50(0%) | Minus/Plus |
Query 281 VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 430 VMR+ +Q+LG L LL ++ N* CLVHLGL RVS TR S*+ L+ N Subject 4041 VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN 4190
Range 9: 4224 to 4412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 33/63(52%) | 0/63(0%) | Minus/Plus |
Query 59 QIQSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY 247 QIQSK I KWM++ + +Q QRR+ GM L+FSL K Q *RL * LM+ S LL T IY Subject 4224 QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY 4412
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3562 to 4008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 64/149(43%) | 0/149(0%) | Minus/Plus |
Query 3 GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 449 G G S +ND V S R L V+LGTFGAGKS L+K FM ++G+ +T+VSPRR LA D+++D + K++ + W V TFE FL + ++ G VI DEVQL+PPGY+DL L ++ I L GDPCQ Subject 3562 GQTGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQ 4008
Range 1: 3534 to 3776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 40/81(49%) | 0/81(0%) | Minus/Plus |
Query 225 SQAGVLGVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 467 SQ GV G S F+D + D +RE+T +LGTFGAGKS+L+K FM ++ GK + F+SPRRALAN IKRD+ Subject 3534 SQCFYEGVTGAISSNLFHDQGNLIEQSINPDGVEREITWILGTFGAGKSYLFKKFMVQNPGKEIIFISPRRALANEIKRDV 3776
Range 2: 3822 to 4007 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 26/62(42%) | 0/62(0%) | Minus/Plus |
Query 3 KSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 188 K + W ++TFE + +K+ C+I DEVQLFPPGY+DL + + ++ I GDPCQ Subject 3822 KELSKNWSIMTFETAILSANRIKSTSCIILDEVQLFPPGYLDLLVALTPLESSIFAVGDPCQ 4007
Range 1: 4208 to 4369 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 32/54(59%) | 0/54(0%) | Minus/Plus |
Query 3 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 164 V+TFE+FL + +K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQ Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQ 4369
Range 2: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 32/68(47%) | 0/68(0%) | Minus/Plus |
Query 177 SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKK 380 ++I +R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K + GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 1: 3781 to 3960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 33/60(55%) | 0/60(0%) | Minus/Plus |
Query 3 KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 182 K W+V TFEVFL+ K G VI DEVQL+PPGY+DL L ++RSD + + GDPCQ Subject 3781 KSANWNVFTFEVFLKMAAKSKPGQVVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQ 3960
Range 2: 3586 to 3780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 32/65(49%) | 0/65(0%) | Minus/Plus |
Query 171 RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEG 365 RE+T VLGTFGAGKS L+K F+ +S G+ VTFVSPR+ALA ++K ++ + K K++G Subject 3586 REVTAVLGTFGAGKSRLFKEFISKSPGRCVTFVSPRKALAEAVKTEIFGESREGKKKGRNGKRDG 3780
Range 3: 3792 to 3956 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 26/55(47%) | 0/55(0%) | Plus/Minus |
Query 7 QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQ 171 QGSP + SLR++ R +S PGG + TSS +T *P F LR TS V T Q Subject 3792 QGSPTTKTFTSLRISVRARSRYPGGYNCTSSIMTT*PGFDLAAILRNTSKVKTFQ 3956
Nucleotide Sequence (509 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
358.5 | 1139.7 | 26% | 2.506e-98 | 45% | NC_001948 | |
207.3 | 366.1 | 41% | 8.266e-53 | 40% | NC_008020 | |
211.4 | 379.8 | 41% | 4.741e-54 | 38% | NC_013527 | |
208.6 | 377.6 | 24% | 3.188e-53 | 32% | NC_029089 | |
207.7 | 603.9 | 38% | 6.017e-53 | 43% | NC_012038 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6143 to 6622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
358.5 bits(776) | 0.0 | 146/160(91%) | 0/160(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG 508 G S AFAGDDMCAN RLR KTEHEGFLNMICLKAKV FV+NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVG Subject 6143 GSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVG 6622
Range 2: 6142 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 123/160(77%) | 0/160(0%) | Minus/Minus |
Query 28 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP 507 PTNSN D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS A*+TSIA*LS+QFSRLPIS AM I SQ++ GFLKIPSLNKHHPQ VG TN TLALRQI+FR PSCSVL NL LAHMSSPA A D P Subject 6142 PTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLRLAHMSSPANAIDSEP 6621
Range 3: 6161 to 6622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 75/154(49%) | 0/154(0%) | Minus/Minus |
Query 47 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACK 508 T+KLK Q FN*+IHN MPNT*GLI SFK N*A HL+L+ + E +T+++ +F HHFN L+Q V IG L I++N +LQV H SNA LP+ L L+DPF K TPS + + +K +L KANH+ + M +P ++S HVI CK Subject 6161 TYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD*LRLLEDPFLK*TPSAECGIGNKLNLGLKANHVQKTLMLCFKPQPSISTHVITCK 6622
Range 4: 6163 to 6618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 74/152(49%) | 0/152(0%) | Plus/Plus |
Query 49 CRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VC 504 CR *HV * ++ A*+ * ++DLP* G++C + + L MVF+* RDL E +LG ++HC +G PGEL+* LC+ G+LC+ GR +*ND+ S L LC + + A DE+LNF +*SY LGLK LA +YYE* S*S V +*VC Subject 6163 CR**HVC*SKVAA*NRA*GFSEHDLP*GQGSVCFQSHILRMVFI*GRDLQEASINLGADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VC 6618
Range 5: 6147 to 6623 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 72/159(45%) | 0/159(0%) | Minus/Minus |
Query 33 HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR 509 H QTQ T L*L+YS* S++AK+LRPN *LQ KLS SS A * H+ + L SSFQ P HR P H+ Q +SPG P QC +P+ + S*RSL * NTI + Q P *GKS H *A * TCH LQ +T+ Subject 6147 HLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRLIEAS*RSLP*INTIRRMWDWKQTEPWP*GKSCSENPHALF*AATFD*HTCHHLQMLLTQ 6623
Range 6: 6162 to 6425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 41/88(47%) | 0/88(0%) | Plus/Plus |
Query 48 LQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS 311 LQ MTC L GL+ +M+ * *FAL+ R L DGV L+KGS R+ N G +ALL +W TWR L M+ R PM T W S Subject 6162 LQVMTCVLIEGCGLKQSMRVF*T*FALRPRFSLFPIPHSADGVYLRKGSSRSLN*SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES 6425
Range 1: 5685 to 6116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.3 bits(446) | 0.0 | 87/144(60%) | 0/144(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI 460 G + FAGDDMCA+ RL+ K H FL+ + LKAKV F ++PTFCGW L K GI+KKPQL+ ER+CIA+E NL NCIDNYAIEVSYAY+LGEL++ MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ + GV+ Subject 5685 GNENICFAGDDMCASKRLQVKNIHAKFLSKLKLKAKVDFTSHPTFCGWNLTKYGIYKKPQLVLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM 6116
Range 2: 5702 to 6115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 66/138(48%) | 0/138(0%) | Minus/Minus |
Query 46 ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAK 459 ITP + + I+ N EIE CLF T TQL AS SSSFI NSPSL A*+TS+A*LS+Q +L +S A+ S S GFL +P K PQKVG + ST A RN + L N L AH+SSPAK Subject 5702 ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAIHRRSSTSCGFL*MPYFVKFQPQKVG*LVKSTFAFSLSFDRNLAWIFLTCNRLEAHISSPAK 6115
Range 3: 5810 to 6064 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 34/85(40%) | 0/85(0%) | Plus/Plus |
Query 154 PNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNF 408 PNFL + F L ET T +++C + * +L+* LC+*G+L +QAG V + DE* G +QLC +*A EV +F Subject 5810 PNFLRLEFNKVWHLQETTTCARASVYCEGDE*FDQLY*QLCH*GLLRVQAG*VSSVRDE*GGGRGDVQLCQNHRKE*ASLEVFDF 6064
Range 1: 5654 to 6058 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 80/135(59%) | 0/135(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID* 433 G + FAGDDMCANS LR EH FL + LKAKV +V+ PTFCGW L +GI+KKPQL++ER+CIA+E GNL+NCIDNYAIEVSYAYRLGE +++ M+EEE +++NCVR +++NKH M+ ++ LF A++* Subject 5654 GNEAICFAGDDMCANSHLRSSDEHSSFLKKLKLKAKVQYVSKPTFCGWNLCSDGIYKKPQLVFERLCIAKETGNLKNCIDNYAIEVSYAYRLGERALQRMDEEETRSYFNCVRVIIKNKHHMKSNVRDLFTALE* 6058
Range 2: 5671 to 6012 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 63/114(55%) | 0/114(0%) | Minus/Minus |
Query 46 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAK 387 CLFL TQL SSS I SP+L A*+TSIA*LSMQF + P+S AMQ S+ S GFL IPS +K PQ VGF T T A RN CS L L LLAH+SSPAK Subject 5671 CLFLIMTLTQLK*LRVSSSSIRWRALSPNLYA*ETSIA*LSMQFFKFPVSLAMQRRSKTSCGFL*IPSEHKFQPQNVGFETYWTFAFNFNFLRNELCSSLDLRWLLAHISSPAK 6012
Range 3: 5786 to 6019 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 30/78(38%) | 0/78(0%) | Minus/Minus |
Query 161 HLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTK 394 H+V + + +P+T+ V FLFIH L+Q V + LN I+INAV + F S A +L N+L FL + P+ K Subject 5786 HVVFVFDNDPYTIEVTACFLFIHPLESPLSQSVCVRDLNRIIINAVF*IPCFFSYAKALENKLWFLVNTIRA*IPTAK 6019
Elderberry carlavirus E isolate EBCVE, complete genome
Range 1: 5540 to 5941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.6 bits(449) | 0.0 | 81/134(60%) | 0/134(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID 430 G FAGDDMCANSRL K EHEGFL + LKAKV+ T PTFCGW L +GI+KKPQL++ER+CIA+E NL NCIDNYAIEV YAYRLGE ++ M+EEE+E++YNCVR +++N+H ++ I+ LF + D Subject 5540 GSERICFAGDDMCANSRLVVKKEHEGFLAKLKLKAKVMVTTKPTFCGWHLCADGIYKKPQLVFERMCIAKETNNLHNCIDNYAIEVGYAYRLGERAVGRMDEEELESYYNCVRVIIKNRHLLKSDIAHLFRSSD 5941
Range 2: 5557 to 5898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 61/114(54%) | 0/114(0%) | Minus/Minus |
Query 46 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAK 387 C F RTQL* S+SSS I SP+ A TSIA*LSMQ RL +S AM ILS SWGFL IPS + PQKVG V TLA R PSCS AH+SSPAK Subject 5557 CRFFIMTRTQL**DSSSSSSIRPTALSPNRYAYPTSIA*LSMQLWRLFVSLAMHILSNTSWGFLYIPSAQRCQPQKVGLVVTMTLAFNFNFARKPSCSFFTTKREFAHISSPAK 5898
Range 3: 5555 to 5881 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 35/109(32%) | 0/109(0%) | Minus/Minus |
Query 44 EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACKS 370 + + +VVR IH N LAQ V I +L I+I+AV++V S+A+ +LGF P + P+ +S + LSF *+ + L *+ V AH+I ++ Subject 5555 DSYAIVVRLELFLIHPPNSPLAQSVCIPHLYRIIIDAVVEVIRLFSDAHPFKYKLGFFVYPVCAKVPTAESRLGRDHDLSF*FQFC*KALVLLLHH*TRVRAHIITSEA 5881
Range 1: 5522 to 5911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.7 bits(447) | 0.0 | 77/130(59%) | 0/130(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 418 G +FAGDDMCA+ RLR EHE FL + LKAKV F TNPTFCGWCL +GIFKKPQL++ER+CIA+E NL NCIDNYAIE+SYAY+LGE ++ M+ E++E++YNCVR +++NKH ++ ++ F Subject 5522 GKEFISFAGDDMCASKRLRVSVEHESFLGKLKLKAKVNFTTNPTFCGWCLTTDGIFKKPQLVFERLCIAKETNNLANCIDNYAIEISYAYKLGEAAVRHMSIEDMESYYNCVRIIIKNKHLLKSDVAKTF 5911
Range 2: 5521 to 5880 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 71/120(59%) | 0/120(0%) | Minus/Minus |
Query 28 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP 387 CLFL RTQL* S SS + SPSL*A*+ SIA*LSMQ +RL +S AM LS+ SWGFLKIPS+ +HHPQKVG V T A R SCS L LNLL AHMSSPAK + P Subject 5521 CLFLIIIRTQL**LSISSMLMCLTAASPSL*A*EISIA*LSMQLARLLVSLAMHSLSKTSWGFLKIPSVVRHHPQKVGLVVKLTFAFNFSFPRKLSCSTLTLNLLEAHMSSPAKLMNSFP 5880
Range 3: 5549 to 5857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 44/103(43%) | 0/103(0%) | Minus/Minus |
Query 56 HTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVI 364 HTVV+ F+ L H N + V IG LNC++INA+ QV F S A L N LGF KDP +TP KSWV + F+ *+ M + P AHVI Subject 5549 HTVVITFHILNAHVPNCGFPKFVSIGNLNCVIINAISQVIGFFSYAQPLEN*LGFFKDPIGCKTPPAKSWVGSEVDFCFQF*FP*KALMLNAYPQPLRGAHVI 5857
Range 4: 5646 to 5858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 33/71(46%) | 0/71(0%) | Minus/Minus |
Query 153 AHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLG 365 AHSC+ P S L C+HR QL +YQC+ PGY F C S K VGV *RS +T KKLG Subject 5646 AHSCNNFPYPQCSCA*LRLPQVCKHRKSQLRNYQCN*PGYWFL*LCTASRKLVGVF*RSHRL*DTTRKKLG 5858
Range 5: 5646 to 5792 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 28/49(57%) | 0/49(0%) | Plus/Plus |
Query 153 TQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPT 299 TQLF GV GSL+NPN F R A L K +TW ALI QLR+PM T Subject 5646 TQLFAGGVLQPMGSLKNPN*FSRGCA*LKKPITWLIALIITQLRFPMLT 5792
Range 6: 5641 to 5859 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 37/73(51%) | 0/73(0%) | Plus/Plus |
Query 148 HKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCA 366 ++PNFL +V R DL*+TPT E +H N *PG LH**L N* LCLQ +* E G LQLCA Subject 5641 YQPNFLRVVSYNRWDL*KTPTSFREAVHS*RNQ*PG*LH**LRN*DFLCLQTWGSRS*AHEH*GYGKLLQLCA 5859
Nucleotide Sequence (321 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
196.3 | 661.3 | 32% | 8.449e-50 | 45% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7546 to 7860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 87/105(83%) | 0/105(0%) | Plus/Plus |
Query 2 LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQK 316 LVG IA ILAHVDS++G++QGC IRATGESILIENCGP EALASTVKEVLGGLKALGVS+ V+EIDY C* *MASQIGKLPGESNEA+EARLK+LELARAQK Subject 7546 LVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQK 7860
Range 2: 7545 to 7865 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 78/107(73%) | 0/107(0%) | Minus/Minus |
Query 1 GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR 321 G F*ALANS S AS ASFDSPG+FPI*LAI Q *SISST LTPKAFKPP+TS TV+A ASLGPQFSI IDSPVALM+QP PLLLST ARI +AI PT+ Subject 7545 GCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTK 7865
Range 3: 7546 to 7857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 47/104(45%) | 0/104(0%) | Minus/Minus |
Query 2 LSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAYK 313 LS *L GF I* + NLT H T +INF N ANP*SLQTS H L+ K +WA +FNQ *L P E TL++ AV M KD N ++Y+ Subject 7546 LSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQ 7857
Range 4: 7590 to 7865 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 47/92(51%) | 0/92(0%) | Plus/Plus |
Query 46 QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS 321 QQ*W RL H G+ VN D*KL PK C + G RFEGFRG*P * N*L LL LNG+SNW+ +K* *S VS SK++ Subject 7590 QQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAA 7865
Range 5: 7574 to 7825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 41/84(49%) | 0/84(0%) | Plus/Plus |
Query 30 SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKP 281 SL M TA++ KV S G SQ+*LK AQ + L R+C EV*RL*GLA L KLI +V+ +W+VKL + +QM+ +KP Subject 7574 SLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKP 7825