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Queries

Nucleotide Sequence (415 letters)

Query ID:ds2016-133_52
Query definition:No definition line
Query length:332
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
415

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
239.2 239.2 29% 4.261e-69 97% ANP22157

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 1]

Sequence ID: gb|ANP22157.1| Length: 2204 Number of Matches: 1

Range 1: 220 to 341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.2 bits(609) 0.0 118/122(97%) 0/122(0%) Plus/Plus
Query       50  LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK  415
                L DVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEG+V+AVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK
Subject    220  LWDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGAVVAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK  341

Nucleotide Sequence (525 letters)

Query ID:ds2016-133_52
Query definition:No definition line
Query length:332
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
525

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
348.2 348.2 32% 1.382e-106 97% YP_004940641

Alignments

MET/HEL gene product [Grapevine leafroll-associated virus 1]

Sequence ID: ref|YP_004940641.1| Length: 2204 Number of Matches: 1

See 1 more title(s)

Range 1: 548 to 717 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
348.2 bits(892) 0.0 165/170(97%) 0/170(0%) Minus/Plus
Query       16  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG  525
                VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG
Subject    548  VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG  717

Nucleotide Sequence (435 letters)

Query ID:ds2016-133_52
Query definition:No definition line
Query length:332
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
435

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
191.8 191.8 25% 2.014e-52 89% ANP22138

Alignments

methyltransferase/helicase [Grapevine leafroll-associated virus 1]

Sequence ID: gb|ANP22138.1| Length: 2204 Number of Matches: 1

Range 1: 1148 to 1257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.8 bits(486) 0.0 98/110(89%) 3/110(3%) Minus/Plus
Query        1  LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAA---ILTPK  321
                +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSA LVLLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKGVSRAA   I+ PK
Subject   1148  IARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAFLVLLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGVSRAASLQIVFPK  1257

Nucleotide Sequence (312 letters)

Query ID:ds2016-133_52
Query definition:No definition line
Query length:332
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
312

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
190.7 190.7 33% 2.402e-55 89% ANP22142

Alignments

p55 [Grapevine leafroll-associated virus 1]

Sequence ID: gb|ANP22142.1| Length: 482 Number of Matches: 1

Range 1: 83 to 185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.7 bits(483) 0.0 92/103(89%) 0/103(0%) Plus/Plus
Query        2  MLRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR  310
                M+RNWK  A SG LKLDT I KKKDK+FILTPEQR AVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEG++SPLLAKFVR
Subject     83  MMRNWKAYANSGSLKLDTPITKKKDKHFILTPEQRAAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGKYSPLLAKFVR  185

Nucleotide Sequence (327 letters)

Query ID:ds2016-133_52
Query definition:No definition line
Query length:332
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
327

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
204.1 204.1 33% 2.243e-57 99% ANP22138

Alignments

methyltransferase/helicase [Grapevine leafroll-associated virus 1]

Sequence ID: gb|ANP22138.1| Length: 2204 Number of Matches: 1

Range 1: 1516 to 1624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.1 bits(518) 0.0 108/109(99%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                EVAFFSKCSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM
Subject   1516  EVAFFSKCSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  1624

Nucleotide Sequence (317 letters)

Query ID:ds2016-133_52
Query definition:No definition line
Query length:332
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 6 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
317

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
180.3 180.3 29% 3.957e-52 96% ABM05860

Alignments

replicase, partial [Grapevine leafroll-associated virus 1]

Sequence ID: gb|ABM05860.1| Length: 381 Number of Matches: 1

Range 1: 44 to 135 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.3 bits(456) 0.0 88/92(96%) 0/92(0%) Plus/Plus
Query       40  HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  315
                HDAMNLRGCV LAKRALVGEY KSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAI+AREGKKE DLVAKTANSWIVN
Subject     44  HDAMNLRGCVGLAKRALVGEYTKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIQAREGKKEPDLVAKTANSWIVN  135