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Queries

Nucleotide Sequence (468 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
468

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
260.9 1039.2 31% 5.411e-69 53% NC_001948
185.3 367.2 26% 3.108e-46 30% NC_009892
183.9 391.5 25% 8.059e-46 31% NC_025388
185.3 283.5 24% 3.108e-46 51% NC_028975
183.0 290.0 19% 1.521e-45 48% NC_003462

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 5189 to 5527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.9 bits(563) 0.0 105/113(93%) 0/113(0%) Plus/Plus
Query      130  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  468
                WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+P
Subject   5189  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIP  5527

Range 2: 5191 to 5526 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 84/112(75%) 0/112(0%) Minus/Minus
Query      132  GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN  467
                G  +RK S+KNFPYG ARL+ AAST G EN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P RTSR SF AI PTHLALVDS+LL G+WVLN
Subject   5191  GILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLN  5526

Range 3: 5144 to 5527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.9 bits(371) 0.0 74/128(58%) 0/128(0%) Minus/Minus
Query       85  WNLRKESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI  468
                W+   E + *E P+W   PQF SFNL LRKF T  D HEEGY I++FMPW+ AFK  T +AQLL SSTPM IKELL  FITT+H  +  Q H ++PPGP * QIT  D+GFKPF I AF L   N  I
Subject   5144  WDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTI  5527

Range 4: 5145 to 5516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 71/124(57%) 0/124(0%) Plus/Plus
Query       86  IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSSYLTLSF  457
                I +L+  S NA+M+NGLKP S *VIW+Q GPGG  +W *++  +C VVMK  N+SLM+IGVE  SN*A  V+ LKA+ QGIK  I+*PSSW S +V NF S +LKL N*G  +H G+SY  LS+
Subject   5145  IVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSY  5516

Range 5: 5142 to 5513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 66/124(53%) 0/124(0%) Minus/Minus
Query       83  GKCQVRTSRMALRASILQLQLEA*KILDVS*RP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVGSFHNHIALHGVPSMPSFQPTWPLLIPNYLMGYGF*TIPHSSIQTQVPQPRNP  454
                GK  +R S M   AS+ QLQ  A KI D   +P*GRL N +LYAL  CFQ  H  CS+A  FH Y HQR V SFHNH A     S P + PTWP L P+Y  G GF*TI H SI T   Q  NP
Subject   5142  GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNP  5513

Range 6: 5173 to 5520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 61/116(53%) 0/116(0%) Plus/Plus
Query      114  MLE*GMV*NPYPIK*FGINKGQVGWKDGIEGTP*SAMWL*NDPTVL**T*VWKKRAIEQRV*KI*KHISKA*R*RFGNLPHGRQETSKIF*ASS*SCKIEARKAIREVLT*HFPFE  461
                ML+* MV*NP+P++* G+N+GQVG  +G+E     A+WL*ND T+L** * W   A EQ +*++*KH+ KA*R  F NLPHG  + S+IF A  *SC+ EA + I E+L   FP +
Subject   5173  MLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQ  5520

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 5087 to 5425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 73/113(65%) 0/113(0%) Plus/Plus
Query      130  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  468
                WFKTHIP+  LE+ RARWV K+  KE RE R G+E T+QF DEH     +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +P
Subject   5087  WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIP  5425

Range 2: 5236 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 34/63(54%) 0/63(0%) Minus/Minus
Query      279  GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNC  467
                G + RKV  +N P G A LN A S  G E    FLTA+R VTES+PLCLG ++S LS AL+ C
Subject   5236  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVIC  5424

Range 3: 5089 to 5220 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 24/44(55%) 0/44(0%) Minus/Minus
Query      132  LCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN  263
                LCSS NC V S*P   S  SF +I  THLAL  S+   G+ VLN
Subject   5089  LCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN  5220

Range 4: 5042 to 5410 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 37/123(30%) 0/123(0%) Minus/Minus
Query       85  ESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI  453
                E ++ E   W  +P F +FN  L +   F + H E  R+   MP I +F  F+ V  L A    MF+ +LL   +T    + FL  +  +PP P   +   W++ F+P  +  F   FL L +
Subject   5042  EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNV  5410

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 4

Range 1: 4772 to 5110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 73/113(65%) 0/113(0%) Plus/Plus
Query      130  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  468
                WFKTH+PL  LES RA WV ++  +E+REVRCG ETT QF D+H  G    L+NA ERFE+IYPRH+G+DSVTFLMAV+KRL FS+P  E+AKL RAKPYGKFL+  FL ++P
Subject   4772  WFKTHLPLFELESIRASWVHRIMNREYREVRCGSETTTQFPDDHPSGAKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSQPSKESAKLNRAKPYGKFLVSEFLKRIP  5110

Range 2: 4774 to 5109 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 60/112(54%) 0/112(0%) Minus/Minus
Query      132  GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN  467
                G   R   ++NFP GFA  + A S  G E    FLTA+RKVTESLPLCLGYM SNLS A       P   SS N  VVS P RTSR S   I  T LAL+DS    G WVLN
Subject   4774  GILLRNSLTRNFP*GFALFSLADSFDGWEKLSLFLTAIRKVTESLPLCLGYMASNLSAAFAKVIFAPLG*SSGN*VVVSEPQRTSRYSRFIIL*TQLALMDSNSKRGRWVLN  5109

Range 3: 4763 to 5011 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 28/83(34%) 0/83(0%) Minus/Minus
Query      121  FPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLI  369
                F D H +G  I + +PW+Y FKS   + Q    S  + I++L   F T +H T+F   +  NP     FQ     MGF+P+ +
Subject   4763  FFDCH*KGD*ITSPVPWVYGFKSLCCICQSNFRSAGVIIRKLSCGF*TATHLTIFSIHYPVNPACSNGFQFKKRQMGFEPWFM  5011

Range 4: 4728 to 5081 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 36/118(31%) 0/118(0%) Plus/Plus
Query       86  IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSS  439
                I R ++    + M +G KPI   + WN     G       N V+C  V K   + LM    E       + +DLK Y QG    I+ P  W S   * F + +  L +*  ++ TGSS
Subject   4728  IRRWKSSLRRSNMNHGSKPICLFLNWNPLEQAGFTG**IENIVRCVAVQKPQLNFLMITPAERKLLWQMQQRDLKPYTQGTGEVIQSPF*WQSKKG*VFPNHQRSLPS*TGRNPTGSS  5081

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 2

Range 1: 4772 to 5110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 75/113(66%) 0/113(0%) Plus/Plus
Query      130  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  468
                WFKTH+PL  LES RA WV ++  KE+REVRCG ETT QF D+H       L+NA ERFE+IYPRH+G+DSVTFLMAV+KRL FS+P VE+AKL RAKPYGKFLL+ FL ++P
Subject   4772  WFKTHLPLFELESIRAGWVHRIMNKEYREVRCGSETTAQFPDDHPNRSKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSRPSVESAKLNRAKPYGKFLLNEFLKRIP  5110

Range 2: 4774 to 5109 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 57/112(51%) 0/112(0%) Minus/Minus
Query      132  GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN  467
                G   R   +KNFP G A  + A ST G E    F TA++KVTESLPLCLG M SNLS A     L     SS NC VVS P RTS  S   I  TH AL+DS    G  VLN
Subject   4774  GILFRNSFNKNFP*GLALFSLADSTDGREKLSLFFTAIKKVTESLPLCLG*MASNLSAAFAKVILDLFGWSSGNCAVVSEPQRTSLYSLFIIR*THPALIDSSSNKGRCVLN  5109

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 3

Range 1: 5238 to 5576 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.0 bits(393) 0.0 72/113(64%) 0/113(0%) Plus/Plus
Query      130  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  468
                WFKTHIP+ +LE+ RA+WV K+  +E RE R G  TT+QF D+H   R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VP
Subject   5238  WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVP  5576

Range 2: 5390 to 5575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 34/62(55%) 0/62(0%) Minus/Minus
Query      282  GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN  467
                GT  RKVSS+N P G A  +FA S  G E    FLTA+R V  S+PLCLGY+ S  S AL+N
Subject   5390  GTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN  5575

Range 3: 5240 to 5365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 20/42(48%) 0/42(0%) Minus/Minus
Query      132  SSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN  257
                SS NC VV  P R S  S      TH AL  S+L+ G+ VLN
Subject   5240  SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN  5365

Nucleotide Sequence (440 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
440

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
320.4 1797.8 42% 5.749e-87 92% NC_001948
82.2 224.2 21% 7.958e-29 37% NC_010295
85.4 247.3 30% 5.472e-30 35% NC_014821
79.4 223.3 30% 3.519e-29 42% NC_028868
80.3 217.8 30% 3.08e-28 39% NC_028975

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 7028 to 7423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.4 bits(693) 0.0 130/132(98%) 0/132(0%) Plus/Plus
Query       45  TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSALFRGQHPSIPSRWALQRRYKKYNLL  440
                TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKS LFRGQHPSIPSRWALQ RYKKYNLL
Subject   7028  TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLL  7423

Range 2: 7012 to 7422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
315.4 bits(682) 0.0 133/137(97%) 0/137(0%) Minus/Minus
Query       29  SKLYFLYRLCNAHREGIDGCCPLNKADLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL*ATARSTASLPKHINTPSTSSVKGDPT  439
                SKLYFLYR CNAHREGIDGCCPLNK DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL ATARSTASLPKHI+TPSTSSVKGDPT
Subject   7012  SKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPT  7422

Range 3: 6989 to 7423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
313.6 bits(678) 0.0 134/145(92%) 0/145(0%) Minus/Minus
Query        6  Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVSNSEIHCLLTKAY*HPFNI*CKRRPHTSPKHTLS  440
                Q*VILFVPSL*RPP*GN*WMLSPE*GRFD LRKCSTSPMPKPTVNGVMVFAQF G *KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVV NSEIHCLLTKAY*HPFNI*CKRRPH     T++
Subject   6989  Q*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVT  7423

Range 4: 7011 to 7421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.6 bits(630) 0.0 132/137(96%) 0/137(0%) Plus/Plus
Query       28  VWGRLLH*MLKGC*YALVRRQWIXXXXXXXXXXYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQPPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY  438
                +WGRLLH*MLKGC*YALVRRQWISLL TTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQ P NWAKTITPLTVGLGIGLVLHFLR+SNLPYSGDNIHQFPHGGRYRDGTKSITY
Subject   7011  LWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITY  7421

Range 5: 7149 to 7421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 86/91(95%) 0/91(0%) Minus/Minus
Query      166  VSYTFCTVSVTPTVRELMDVVP*IRQI*PPQKMQHKPNAQANCQWSYGFCPIHRRLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKE  438
                VSYTFCTV VTPTVRELMDVVP*IR I* PQKMQHKPNAQANCQWSYGFCPI R LKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKE
Subject   7149  VSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKE  7421

Range 6: 7014 to 7118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 33/35(94%) 0/35(0%) Minus/Minus
Query       31  HKVI*IQSCEQQRDPLPPYQSILTPLQHLV*KATP  135
                HKVI*IQSC QQRDPLPPYQSIL PLQHLV*KATP
Subject   7014  HKVI*IQSCAQQRDPLPPYQSILAPLQHLV*KATP  7118

Range 7: 7156 to 7422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.1 bits(413) 0.0 84/89(94%) 0/89(0%) Plus/Plus
Query      173  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSRL*IGQKP*LH*QLAWALGLCCIF*GGQICLIQGTTSINSLTVGVTETVQKV*LT  439
                EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFS L IGQKP*LH*QLAWALGLCCIF*G QI LIQGTTSINSLTVGVT TVQKV*LT
Subject   7156  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LT  7422

Range 8: 7012 to 7119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 34/36(94%) 0/36(0%) Plus/Plus
Query       29  CGVAFYTRC*RGVNMLW*GGSGSRCCSQL*IQITL*  136
                CGVAFYTRC*RG NMLW*GGSGSRCC+QL*IQITL*
Subject   7012  CGVAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*  7119

Phaius virus X, complete genome

Sequence ID: Length: 5816 Number of Matches: 4

Range 1: 4637 to 4813 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 31/59(53%) 0/59(0%) Plus/Plus
Query      262  MPFQPPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY  438
                MP QPP ++ +  + L +G+    +L+ L RS LP+ GDNIH  PHGG YRDGTKSI Y
Subject   4637  MPLQPPTDYTRIYSFLVIGVSCVTILYLLTRSTLPHVGDNIHHLPHGGCYRDGTKSIYY  4813

Range 2: 4428 to 4637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 31/70(44%) 0/70(0%) Plus/Plus
Query       51  DVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*  260
                D EG++I  G EAV+L  AH+  F  PC+  G T +VVTLL  +    +D    YI+ TRH +KL I+ *
Subject   4428  DPEGLIIALGPEAVELLEAHSLPFLRPCQALGLTTSVVTLLTDKPLDEQDPVDAYISITRHTDKLNILS*  4637

Range 3: 4418 to 4627 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 26/70(37%) 0/70(0%) Minus/Minus
Query       41  IINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL*ATARSTASLPKHINTPSTSSVK  250
                +++ S+CLV  M*    S     L   +VTT  V P   QG       A+  STAS P  I  PS S +K
Subject   4418  MLSLSVCLVIEM*ASTGSCSSRGLSVSKVTTDVVSPRAWQGRRKGREWASNNSTASGPSAIIRPSGSKLK  4627

Range 4: 4735 to 4800 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 17/22(77%) 0/22(0%) Minus/Minus
Query      360  FVPSL*RPP*GN*WMLSPE*GR  425
                FVPSL*+PP*G * MLSP  GR
Subject   4735  FVPSL*QPP*GR*CMLSPTWGR  4800

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 5

Range 1: 7347 to 7523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 31/59(53%) 0/59(0%) Plus/Plus
Query      262  MPFQPPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY  438
                MPF  P +++K++ P+ +G  + LVL  L RS LP  GDNIH  PHGG Y+DGTK I+Y
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISY  7523

Range 2: 7130 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 20/45(44%) 0/45(0%) Plus/Plus
Query       48  LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR  182
                ++ EG +IC  KE  D    H+ E+KLPC+VRG+TF+ VT +  +
Subject   7130  VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 3: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 8/15(53%) 0/15(0%) Plus/Plus
Query      210  FYIAATRHREKLIIM  254
                +Y+A TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 4: 7129 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 23/66(35%) 0/66(0%) Minus/Minus
Query       47  NFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSEL*ATARSTASLPKHINTPSTSS  244
                N  LCLV+A      ++      + +VT  KV P T QGNL S      +S+ S  + I  PS S+
Subject   7129  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGST  7326

Range 5: 7334 to 7525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 26/64(41%) 0/64(0%) Minus/Minus
Query      249  Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*KGILLHD  440
                Q*+IL VPS * PP*G   MLSP  G+   ++   T     P   G  +     G  KGIL+ D
Subject   7334  Q*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILIRD  7525

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 4

Range 1: 6837 to 7001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 29/55(53%) 0/55(0%) Plus/Plus
Query      274  PPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY  438
                PP +  + + P+ +GLG+G+V+  L RS LP  GDNIH  PHGG Y DGTK I+Y
Subject   6837  PPPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISY  7001

Range 2: 6587 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 19/45(42%) 0/45(0%) Plus/Plus
Query       51  DVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRD  185
                D+EG ++C+ KE  DL   H +++K  C++RGSTF++VT + + D
Subject   6587  DIEGQIVCYEKEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD  6721

Range 3: 6731 to 6793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 11/21(52%) 0/21(0%) Plus/Plus
Query      192  PEDRHWFYIAATRHREKLIIM  254
                PEDR+  Y+  TRHR  L I+
Subject   6731  PEDRYKVYLCLTRHRSILRIL  6793

Range 4: 6830 to 7003 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 29/58(50%) 0/58(0%) Minus/Minus
Query      267  Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*K  440
                Q*+ILFVPS * PP G  W+LSP *G  DL+R   T+P P+P   G        GG K
Subject   6830  Q*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIGNKTLVLSGGGVK  7003

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 4

Range 1: 6872 to 7036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 30/55(55%) 0/55(0%) Plus/Plus
Query      274  PPVNWAKTITPLTVGLGIGLVLHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITY  438
                PP +  K + P+ VGLG+G+V+  L RS LP  GDN+H  PHGG Y DGTK I Y
Subject   6872  PPPDNTKVLLPIAVGLGVGVVIWCLTRSTLPSVGDNVHSLPHGGNYMDGTKRINY  7036

Range 2: 6625 to 6756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 17/44(39%) 0/44(0%) Plus/Plus
Query       54  VEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRD  185
                VEG ++C+ KE  +L   H +++K  C++RGSTF++VT + + +
Subject   6625  VEGQIVCYEKEIFELLDRHGADYKRDCQIRGSTFDIVTFITASE  6756

Range 3: 6733 to 6828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 13/32(41%) 0/32(0%) Plus/Plus
Query      159  VVTLLKSRDPTPEDRHWFYIAATRHREKLIIM  254
                V  +  S    PEDR+  Y+  TRHR  L I+
Subject   6733  VTFITASESFEPEDRYKVYLCLTRHRSVLRIL  6828

Range 4: 6865 to 7038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 29/58(50%) 0/58(0%) Minus/Minus
Query      267  Q*VILFVPSL*RPP*GN*WMLSPE*GRFDLLRKCSTSPMPKPTVNGVMVFAQFTGG*K  440
                Q* I FVPS+* PP G    LSP  GR DL++   T+P PKPT  G   F    GG K
Subject   6865  Q*FIRFVPSM*FPPWGRLCTLSPTEGRVDLVKHQITTPTPKPTAMGKRTFVLSGGGVK  7038

Nucleotide Sequence (354 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
354

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
272.3 929.8 21% 1.249e-72 51% NC_001948
138.1 138.1 33% 3.247e-32 47% NC_029087
90.4 241.2 19% 5.128e-31 38% NC_009892
93.2 248.5 29% 2e-31 46% NC_005343
85.4 217.8 32% 3.03e-29 43% NC_014821

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 10

Range 1: 4130 to 4480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
272.3 bits(588) 0.0 111/117(95%) 0/117(0%) Plus/Plus
Query        2  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD  352
                TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKVAKAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYD
Subject   4130  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYD  4480

Range 2: 4129 to 4482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.6 bits(486) 0.0 100/118(85%) 0/118(0%) Minus/Minus
Query        1  ESYVL*QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV  354
                ESYVL* GSPASEMKASLRI  +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA ATL  SSISRSFLIE A+ARLGETKVTN PSDLFMKLLY+KLFPAPNV
Subject   4129  ESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNV  4482

Range 3: 4301 to 4480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 34/60(57%) 0/60(0%) Minus/Minus
Query      173  IICALTRITSK*DESVTANNKET*INVTRGK*LNFIKDHAMTSL*TCNLSKENFEGNNIP  352
                +ICALT ITSK*+ES+T  NK+ *I+V+R K L+ IK+H + SL +CN SKEN +   IP
Subject   4301  VICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP  4480

Range 4: 4130 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 23/42(55%) 0/42(0%) Minus/Minus
Query        2  IHFQVLLD*IG*SPPR*NKSHKFSFRSLHEALV*ETLSSPKC  127
                IHF+++ D*I *S    NK ++F+ R  HE LV ETL SPKC
Subject   4130  IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKC  4255

Range 5: 4306 to 4479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 31/58(53%) 0/58(0%) Plus/Plus
Query      178  CCYLRSFP*KGYRSKGWSLRDL**SSAISPWLH*SMSPCYSQ*RFHLTCW*SLSKHI*  351
                C     FP*K  R +GW L D **   +S W+H SM   Y+ * FH TCW*S+SKHI*
Subject   4306  CSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*  4479

Range 6: 4129 to 4239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 19/37(51%) 0/37(0%) Plus/Plus
Query        1  YIWGWKEFPIQELHEEI*RKICDFCFT*AGSSQFNQE  111
                YIWGW+EF +QE HE++*  I + CF+    S+FNQ+
Subject   4129  YIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK  4239

Range 7: 4323 to 4481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 29/53(55%) 0/53(0%) Minus/Minus
Query      195  NHMCFDKDHQQVR*KRHCE*QGDIDQCNQGEIAELHQRSRNDQPLDL*PF*GK  353
                +HMCFD DHQQV+*K H  *   ID+C Q E    HQ+S + QP  L  F*GK
Subject   4323  SHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GK  4481

Range 8: 4131 to 4235 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 18/35(51%) 0/35(0%) Minus/Minus
Query        3  *LNWLEPA*VKQKSQIFLQIXXXXSCIGNSFQPQM  107
                *LN L+    KQ+ +I+ Q  S*+SC  NS QPQM
Subject   4131  *LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQM  4235

Range 9: 4320 to 4478 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 33/53(62%) 0/53(0%) Plus/Plus
Query      192  KFSLERLQV*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSHLLVILVKAHM  350
                +FSLE+LQ *RL   * LM+ S F L T IY  LL+ V LS HLLVI VKAHM
Subject   4320  RFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHM  4478

Range 10: 4131 to 4190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 13/20(65%) 0/20(0%) Plus/Plus
Query        3  HLGLERVSYTRAS*RDLKEN  62
                HLGL RVS TR S*+ L+ N
Subject   4131  HLGLGRVSCTRVS*KGLRVN  4190

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 1

Range 1: 3670 to 4020 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 55/117(47%) 0/117(0%) Plus/Plus
Query        2  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD  352
                TFGAGKS L+K FM  ++G+ +T+VSPRR LA     D+++D   +     K++ + W V TFE FL +   ++ G  VI DEVQL+PPGY+DL L ++     I L GDPCQS YD
Subject   3670  TFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYD  4020

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 4208 to 4381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 35/58(60%) 0/58(0%) Plus/Plus
Query      179  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD  352
                V+TFE+FL  +  +K GH VI DE+QLFPPGY+DL L+   SD  + LAGDPCQS YD
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYD  4381

Range 2: 4034 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 28/55(51%) 0/55(0%) Plus/Plus
Query        2  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKK  166
                TFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K    GK  K
Subject   4034  TFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 3: 4207 to 4365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 25/53(47%) 0/53(0%) Minus/Minus
Query      178  QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  336
                QGSPA     S  +  R RS *PGG S* SS IT  P       +R +SKV+T
Subject   4207  QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST  4365

Range 4: 4033 to 4230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 25/66(38%) 0/66(0%) Minus/Minus
Query        1  KTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV  198
                + S   +++  F   P    L +     S LI  AR  LGETKV  FP D  M  L R L P P V
Subject   4033  RNSSKVSTRTFFRSFPLPIFLFAPVKPMSHLISSARDLLGETKVIAFPGDFDMNFLNRVLLPHPKV  4230

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 4

Range 1: 3781 to 3972 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 36/64(56%) 0/64(0%) Plus/Plus
Query      161  KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD  352
                K   W+V TFEVFL+     K G  VI DEVQL+PPGY+DL L ++RSD  + + GDPCQS YD
Subject   3781  KSANWNVFTFEVFLKMAAKSKPGQVVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQSDYD  3972

Range 2: 3610 to 3780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 26/57(46%) 0/57(0%) Plus/Plus
Query        2  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEG  172
                TFGAGKS L+K F+ +S G+ VTFVSPR+ALA ++K ++  +      K    K++G
Subject   3610  TFGAGKSRLFKEFISKSPGRCVTFVSPRKALAEAVKTEIFGESREGKKKGRNGKRDG  3780

Range 3: 3792 to 3956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 29/55(53%) 0/55(0%) Minus/Minus
Query      172  QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ  336
                QGSP ++   SLRI+ R RS  PGG + TSS +T *P F     LR TSKV T Q
Subject   3792  QGSPTTKTFTSLRISVRARSRYPGGYNCTSSIMTT*PGFDLAAILRNTSKVKTFQ  3956

Range 4: 3609 to 3704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 19/32(59%) 0/32(0%) Minus/Minus
Query        1  ARARLGETKVTNFPSDLFMKLLYRKLFPAPNV  96
                ARA LG+TKVT+ P  L M  L   LFPAP V
Subject   3609  ARAFLGDTKVTHRPGLLEMNSLKSLLFPAPKV  3704

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 4363 to 4536 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 32/58(55%) 0/58(0%) Plus/Plus
Query      179  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD  352
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYD  4536

Range 2: 4186 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 25/39(64%) 0/39(0%) Plus/Plus
Query        2  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL  118
                TFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4186  TFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 3: 4185 to 4301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 20/39(51%) 0/39(0%) Minus/Minus
Query        1  RSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV  117
                +S L++ AR  LGETKV  FP D  M  L R+L P P V
Subject   4185  KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKV  4301

Range 4: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 15/35(43%) 0/35(0%) Minus/Minus
Query      178  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  282
                +S+ PGG S* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Nucleotide Sequence (390 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
390

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
256.3 1456.9 41% 9.84e-68 96% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 7521 to 7871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
256.3 bits(553) 0.0 114/117(97%) 0/117(0%) Minus/Minus
Query        2  PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNISFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY  352
                PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPP+ SFTVDARASLGPQFSIKIDSPVALMKQPW LPLLLST*ARIWMAITIPTKTRIPNRQY
Subject   7521  PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQY  7871

Range 2: 7522 to 7875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
252.2 bits(544) 0.0 115/118(97%) 0/118(0%) Minus/Minus
Query        3  KTFRXXXXXXXLQRF*PGFKSLI*FTGEFPNLTCHSTNLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI  356
                +TFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHS NLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLV+ATTAVYMSKDLDGNYNSYQDQNSKQTI
Subject   7522  RTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTI  7875

Range 3: 7520 to 7876 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.1 bits(498) 0.0 117/119(98%) 0/119(0%) Plus/Plus
Query        1  CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAXXXXXXXXXXXXXEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL  357
                CIVCLEFWSW*EL*LPSKSLLM*TAVVA TKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKL EWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL
Subject   7520  CIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL  7876

Range 4: 7521 to 7742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 71/74(96%) 0/74(0%) Plus/Plus
Query        2  VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGDVGRFEGFRG*PCC*R  223
                VLSVWNSGLGRNCNCHPNPCSCRQQ*WQ PRLLH*GHWRVNFD*KLRPK*GPCIHCEG  GRFEGFRG*PCC*R
Subject   7521  VLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*R  7742

Range 5: 7788 to 7871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 28/28(100%) 0/28(0%) Plus/Plus
Query      269  ETPR*IK*GF*SPAKIAGVS*SSKAAGR  352
                ETPR*IK*GF*SPAKIAGVS*SSKAAGR
Subject   7788  ETPR*IK*GF*SPAKIAGVS*SSKAAGR  7871

Range 6: 7520 to 7732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 68/71(96%) 0/71(0%) Minus/Minus
Query        1  HG*PLKPSNLPTSPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT  213
                HG*PLKPSNLP  PSQWMQGPHLGRSFQSKLTLQWP**SNLG CHYCCLHEQGFGWQLQFLPRPEFQTDNT
Subject   7520  HG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNT  7732

Range 7: 7787 to 7873 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 28/29(97%) 0/29(0%) Minus/Minus
Query      268  DLPAAFEL*LTPAILAGLQKPHLIHRGVS  354
                +LPAAFEL*LTPAILAGLQKPHLIHRGVS
Subject   7787  NLPAAFEL*LTPAILAGLQKPHLIHRGVS  7873

Range 8: 7582 to 7872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 96/97(99%) 0/97(0%) Plus/Plus
Query       63  HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG  353
                HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG
Subject   7582  HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG  7872

Nucleotide Sequence (615 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
62
124
186
248
310
372
434
496
558
615

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
441.4 1372.5 50% 3.521e-123 45% NC_001948
109.2 396.8 50% 4.047e-49 40% NC_009892
115.6 294.3 36% 1.175e-46 40% NC_003462
116.1 306.2 37% 8.575e-47 43% NC_018714
117.5 312.2 27% 3.674e-48 48% NC_008020

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 10

Range 1: 6332 to 6940 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
441.4 bits(957) 0.0 179/203(88%) 0/203(0%) Minus/Plus
Query        6  KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF  614
                +RICIAREMGNLENCIDNYAIE SYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+F AFTAGVPD+PNL+GRYIKPYSPGCAV G++NILDEYLSV D SGFDVLFSDPYQNIS+P+EAHFIKSKTCRF
Subject   6332  ERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRF  6940

Range 2: 6337 to 6603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.8 bits(301) 0.0 69/89(78%) 0/89(0%) Plus/Minus
Query      343  DKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAMQI  609
                D ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLTKN TQL* ASTSSS IIS+ +SP+  A*++SIA*LS+QFSRLPIS AM I
Subject   6337  DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHI  6603

Range 3: 6685 to 6939 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 63/85(74%) 0/85(0%) Plus/Minus
Query        7  NLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  261
                NLQV D MK ASLG L+F YGSENSTSKPE S TD+YSSS+   P TA PGE GLMYLP RLG+SGTPAVKA+K SSS +SSLIK
Subject   6685  NLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK  6939

Range 4: 6464 to 6922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 78/153(51%) 0/153(0%) Plus/Minus
Query       24  LYEVSLPRNTDILIWVRE*HVKTRNVINRQILIKYVYPPFYSATRRVWLDVPPRKIGSVRNSGCEGCETLVLSDEFSYQTTFTATRNTMNNNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV  482
                L E+ L RN D+L+WVRE H+KT  +++ Q+LIKY+  P++    R+ L+VP  +I +V N+ CE  E L+L +   Y TTFT TR+TMN+ WK +HT +T+KLK  Q FN*+IHN   MPNT*GLI SFK + N*ASHL+L+ +QE +T+++
Subject   6464  LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM  6922

Range 5: 6332 to 6424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 16/31(52%) 0/31(0%) Plus/Minus
Query      522  LAQPVGIGLLNCIIINAVFQVTHFASNANSL  614
                L+Q V IG L  II+N + QV H  SNA  L
Subject   6332  LSQSVCIGDLYRIIVNTILQVAHLPSNAYPL  6424

Range 6: 6342 to 6944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 103/201(51%) 0/201(0%) Plus/Minus
Query        2  RQICRSWTL*SEPPSEH*YFDMGQRIARQNQKCHQQTDTHQVCLSSLLQRNQESMA*CTSQKDWECQELRL*RL*NSRPQ**VLLSNYFYRYQEHYEQQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PRTAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQC  604
                RQ  +  T *+ P  E * F MG R A QN K   +T THQV   SL     E+ A*CT   D  C E  L*+L*NS P+    L NYFY YQ HYE  LEI*AH +H QTQ  T L*L+YS* S++AK+LRPN *LQ   KLSISS A  *PR  H+ +   LL  SSFQ    P   HR P  HN Q + PG P   QC
Subject   6342  RQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QC  6944

Range 7: 6337 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 70/128(55%) 0/128(0%) Minus/Plus
Query      226  NLHCSRNG*PGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAVLG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQIXXXXXXXSW*R*K*FDKRTHH*GREF  609
                ++HC  +G PG+L+* LC+ G+LC+  GR  +*ND+  RS   L LC +LG + A DEMLNF  +*SY LGLK LA  +YYE* S*S V +*VC C  CA ISS  S*C+W* *K*F+K  +  G EF
Subject   6337  DMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EF  6720

Range 8: 6766 to 6933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 25/56(45%) 0/56(0%) Minus/Plus
Query       13  EVHQAILSWLRCKREDKHT**VSVC**HFWF*RAIL*PISKYQCSEGGSLHKVQDL  180
                +VH A+ S +   RE  +T**V V    F F* A+L PI K+Q S  G+ H+V++L
Subject   6766  KVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL  6933

Range 9: 6474 to 6659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 38/62(61%) 0/62(0%) Minus/Plus
Query      287  VCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLLFI  472
                V  SW   S R*DAQF   LKL IRP*VFG++*+L*I *LK C  LSL V  VC +FQ  FI
Subject   6474  VLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFI  6659

Range 10: 6339 to 6425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 16/29(55%) 0/29(0%) Minus/Plus
Query      521  FALLAKWVTWKTALIIMQLRSPMPTGWAS  607
                +ALL +W TW+  L IM+ RSPM T W S
Subject   6339  YALLGRWATWRIVLTIMR*RSPMHTDWES  6425

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 6

Range 1: 6482 to 6853 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 52/124(42%) 0/124(0%) Minus/Plus
Query        6  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF  377
                V +M+ +V  L  + F      +   ++VH+VPGSGK++LIRE +  +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS +  +GFD  FSDP+QN      AHF+   + RF
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRF  6853

Range 2: 6230 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 40/70(57%) 0/70(0%) Minus/Plus
Query      405  KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI  614
                +R+ IA E  NL+NCIDNYAIE SYAY +GE   + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I
Subject   6230  ERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 3: 6231 to 6380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 24/50(48%) 0/50(0%) Plus/Minus
Query      464  TAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQCKFS  613
                T+HSCS    LLHSS    T P  +H  PQLHN QC+  G  F++Q + S
Subject   6231  TSHSCSVHPFLLHSSTWKVTPPWSKHMKPQLHNCQCNSGGCLFQQQSEAS  6380

Range 4: 6598 to 6828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 31/77(40%) 0/77(0%) Plus/Minus
Query       31  K*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  261
                K*A   +  F* GSE   S P  +S +RYSSSM  LP    P     M  P+  G SG+P  KA      + +SLI+
Subject   6598  K*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR  6828

Range 5: 6362 to 6430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 12/23(52%) 0/23(0%) Plus/Minus
Query      414  KQSRN*ASHLVLISNQEPHTVVV  482
                K+ RN     V + N EPHTVVV
Subject   6362  KEIRNRTF*KVGVLNNEPHTVVV  6430

Range 6: 6241 to 6420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 33/60(55%) 0/60(0%) Plus/Minus
Query      424  EIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM  603
                E EH      LT N TQL*CAS SSS      +SP  *A ++SIA*LSMQF RL +S A+
Subject   6241  ETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVSTAI  6420

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 6702 to 7073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 54/124(44%) 0/124(0%) Minus/Plus
Query        6  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF  377
                V IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS +  +GF+ LFSDPYQN      AHFI   + RF
Subject   6702  VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRF  7073

Range 2: 6381 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 37/68(54%) 0/68(0%) Minus/Plus
Query      411  KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  614
                +R+ IARE  NLENCIDNYAIE S AY++GE     +  +EV+AHYNCVRF+V++ H ++ +I  LF+
Subject   6381  ERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK  6584

Range 3: 6818 to 7051 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 31/78(40%) 0/78(0%) Plus/Minus
Query       28  MK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  261
                MK*A   +  F  GSE     P   S D+YSS M  LP    P    L+Y+P  L  SGTP V A  L   + +  IK
Subject   6818  MK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASILLFRIKACFIK  7051

Range 4: 6392 to 6547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 26/52(50%) 0/52(0%) Plus/Minus
Query      448  LFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM  603
                L  T  RTQL* ASTS      +  SP L A ++SIA*LS+QFS+  +S A+
Subject   6392  LCCTMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSKFLVSLAI  6547

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 4

Range 1: 6673 to 7041 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 53/123(43%) 0/123(0%) Minus/Plus
Query        6  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF  374
                +IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS +  +GF+ LFSDPYQN      AHFI   + RF
Subject   6673  LIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRF  7041

Range 2: 6382 to 6582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 37/67(55%) 0/67(0%) Minus/Plus
Query      414  KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  614
                +R+ IARE  NLENCIDNYAIE S AY++GE     ++ +EV+AHYNCVRF+V++ H ++ +I  LF
Subject   6382  ERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF  6582

Range 3: 6393 to 6548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 31/52(60%) 0/52(0%) Plus/Minus
Query      448  LFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM  603
                L  T  RTQL*CASTS         SP L*A ++SIA*LSMQFSR  +SRA+
Subject   6393  LCCTMKRTQL*CASTS*GDRYKFKFSPIL*AQETSIA*LSMQFSRFLVSRAI  6548

Range 4: 6816 to 6989 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 26/58(45%) 0/58(0%) Plus/Minus
Query       58  F*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKL  231
                F*YGSE    KP   S DRYSS +   P    P    LM +P     SGTP V A  L
Subject   6816  F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML  6989

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 4

Range 1: 5874 to 6116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 49/81(60%) 0/81(0%) Minus/Plus
Query      372  KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI  614
                +R+CIA+E  NL NCIDNYAIE SYAY+LGEL++  MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ +   GV+
Subject   5874  ERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM  6116

Range 2: 6153 to 6359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 43/69(62%) 0/69(0%) Minus/Plus
Query      162  MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPY  368
                M+ LV     F F  V SVLR PV+ H VPG+GKS+LIRELI  D  F AFTAG PD PNLSGR IK Y
Subject   6153  MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY  6359

Range 3: 5885 to 6115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 37/77(48%) 0/77(0%) Plus/Minus
Query      373  ITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAM  603
                ITP +  +   I+ N  EIE    CLF T   TQL  AS SSSFI    NSP+L A*++S+A*LS+Q  +L +S A+
Subject   5885  ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAI  6115

Range 4: 6260 to 6358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 17/33(52%) 0/33(0%) Plus/Minus
Query      163  YGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK  261
                Y L+  P R G SG+PAVKA+K  S +++SLI+
Subject   6260  YFLIARPLRFGGSGSPAVKAMKR*SRLINSLIR  6358

Nucleotide Sequence (404 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
41
82
123
164
205
246
287
328
369
404

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
320.9 1678.9 30% 3.672e-87 86% NC_001948
120.2 225.0 25% 6.279e-31 52% NC_028975
116.5 208.5 32% 2.204e-30 32% NC_028868
102.3 224.5 29% 3.725e-32 40% NC_009892
121.1 221.8 25% 4.589e-31 48% NC_025388

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 7996 to 8397 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.9 bits(694) 0.0 133/134(99%) 0/134(0%) Minus/Plus
Query        1  DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK  402
                +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK
Subject   7996  NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK  8397

Range 2: 7996 to 8397 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.0 bits(620) 0.0 116/134(87%) 0/134(0%) Plus/Minus
Query        1  FGWSSLNATLRFKRALICDSKEEVKGCKFLILIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKRTYQLVYCTFIHDI  402
                F WSS N+TL FKR LICDS+E++KGCK  ILIKS LGP+S W PRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLA QG*PLGATNIRAVTCYIY HIKLHAFSYARFTK T QLVYCTFIHDI
Subject   7996  FRWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDI  8397

Range 3: 7995 to 8396 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
273.7 bits(591) 0.0 115/134(86%) 0/134(0%) Minus/Plus
Query        2  RCHG*RCNRRADTCVW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**E*EICSL*LLPWSHR*ERA*TEGWH*ESSNQ  403
                +CHG*RCNRRAD+C+W*IWHS*KRAI*CG+RYSTSLL*CW*LPEVNPD QESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGD+T *LGQE I**E*++CSL*    SHR*E A*T+GW+*+SSN+
Subject   7995  KCHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNE  8396

Range 4: 7994 to 8392 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.5 bits(584) 0.0 115/133(86%) 0/133(0%) Plus/Minus
Query        6  LELS*CHPSVQARSHL*LQGRSQRLQISHSH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQTHVSARLLHLHP*HL  404
                LEL * HP VQA SHL*L  ++QRLQ  HSH*I SWP+* V SPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSC SGLTSGSYQHQSSDVLYL PHQIARFQLCQIHQ H SARLLHLHP*HL
Subject   7994  LELF*FHPLVQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHESARLLHLHP*HL  8392

Range 5: 7994 to 8392 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 116/133(87%) 0/133(0%) Minus/Plus
Query        6  QMSWMKVQ*TS*YVRLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMRMRNLQPLTSSLESQMRARLNRRVALRELQ  404
                QMSWMKVQ*TS*+V LVNLA*LKACNLMW *I*HVTALMLVAPRGQP* ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRG+H L GPR+DLMRM++LQPL  S ESQMR RLN+RV L+ELQ
Subject   7994  QMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQ  8392

Range 6: 8046 to 8393 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.2 bits(568) 0.0 113/116(97%) 0/116(0%) Plus/Minus
Query        5  VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD  352
                VGALL+PPFGSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAIS+ATSNCTLSAMPD
Subject   8046  VGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPD  8393

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 3

Range 1: 8222 to 8452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 46/77(60%) 0/77(0%) Minus/Plus
Query        7  LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAP  237
                + R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +ALEP+ G+ R P
Subject   8222  VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAALEPENGLVRKP  8452

Range 2: 8144 to 8212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/23(52%) 0/23(0%) Minus/Plus
Query      244  DIARHCSDVGSSQRSTLIGKSPF  312
                DIAR+C+D GSS+ +  IG S +
Subject   8144  DIARYCADAGSSESTEFIGTSSY  8212

Range 3: 8227 to 8451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 41/75(55%) 0/75(0%) Plus/Minus
Query        8  GALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDL  232
                G L  P  GS A    T  KKSKAANF FSL P      GGI V+  MFHTI A*  QNLR+VV  L+  AIS L
Subject   8227  GFLTSPFSGSKAALLDTCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLMTAAISIL  8451

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 3

Range 1: 8162 to 8392 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 44/77(57%) 0/77(0%) Minus/Plus
Query        7  LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAP  237
                + R EIA +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF  V++ +ALEP+ G+ R P
Subject   8162  VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAALEPENGLVREP  8392

Range 2: 7994 to 8152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 17/53(32%) 0/53(0%) Minus/Plus
Query      244  DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPF  402
                D+     I+ +      +G+ ES       DIAR+C+D GSS  +  IG S +
Subject   7994  DISTAEEIEHIRSDLVRAGVPESTLTFSMWDIARYCADAGSSASTEFIGTSSY  8152

Range 3: 8167 to 8394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 36/76(47%) 0/76(0%) Plus/Minus
Query        5  VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDL  232
                +G+   P  GSSA    T  KKS A NF F L PF     GG+ V   MF TIFA*  Q    VV  LI  AIS L
Subject   8167  LGSRTSPFSGSSAALFETCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLITEAISIL  8394

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 3

Range 1: 8549 to 8740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 39/64(61%) 0/64(0%) Minus/Plus
Query        4  TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPT  195
                TLR+FC YYAK+VWN+ LET  PPA W+ KG+ +  K+AAFDFF GV   +ALEP  GI R PT
Subject   8549  TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAALEPVDGIIRKPT  8740

Range 2: 8339 to 8533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 26/65(40%) 0/65(0%) Minus/Plus
Query      205  VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR  399
                V  E  I ++   F + G++     +V + IARHC+DVGSS +S LIG  P  D+   E+A II+
Subject   8339  VASEEKISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK  8533

Range 3: 8518 to 8742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 35/75(47%) 0/75(0%) Plus/Minus
Query        2  LVGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAIS  226
                LVG L++P  GS A    TP KKSKAA    SL P L Q+AGG+ VS   F TI A*  QN R V  ++++  ++
Subject   8518  LVGFLMIPSTGSRAAELSTP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLLMIVA  8742

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 3

Range 1: 8207 to 8431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 47/75(63%) 0/75(0%) Minus/Plus
Query        7  RSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAP  231
                R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +ALEP+ G+ R P
Subject   8207  RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAALEPENGLVRKP  8431

Range 2: 8123 to 8191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 11/23(48%) 0/23(0%) Minus/Plus
Query      244  DIARHCSDVGSSQRSTLIGKSPF  312
                DIAR+C+D GSS+ +  +G S +
Subject   8123  DIARYCADAGSSESTEFVGTSSY  8191

Range 3: 8206 to 8430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 40/75(53%) 0/75(0%) Plus/Minus
Query        8  GALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDL  232
                G L  P  GS A    T  KKSKAANF FSL PF     GG+ V+  MF TI A*  QNL +VV  LI  AIS L
Subject   8206  GFLTSPFSGSKAALFETCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLITAAISIL  8430

Nucleotide Sequence (640 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
64
128
192
256
320
384
448
512
576
640

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
437.7 2235.4 30% 4.669e-122 94% NC_001948
107.4 276.4 30% 2.116e-45 41% NC_003462
108.3 280.6 33% 1.243e-46 37% NC_009892
115.2 310.5 18% 4.281e-49 54% NC_008020
108.7 222.7 27% 9.865e-46 38% NC_010538

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 6326 to 6886 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
437.7 bits(949) 0.0 183/187(98%) 0/187(0%) Plus/Plus
Query       79  VGERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  639
                + ERICIAREMGNLE CIDNYAIEVSYAYRLGEL+IEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ
Subject   6326  IWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  6886

Range 2: 6326 to 6886 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
403.4 bits(874) 0.0 176/187(94%) 0/187(0%) Minus/Minus
Query       79  LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEVFILGN*LPYXXXXXXXXXTMNDYWKFKHTENSYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPLPD  639
                LVWVREQHIKT*KILDGQVLIKYI+FPWHCTPWRIRLNVPSCEIRAVWNTCCESYE+ ILGN*LPY*TTFTTTRHTMNDYWKFKHTEN+YKLKC*QCFN*IIHNTQIMPNT*GLIN FK*A*N*ASHLMLVPDQESNTIIM LHFFLGHHFNG*LSQ V IG+LYRIIVNT LQV HLPSNAYPLPD
Subject   6326  LVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD  6886

Range 3: 6324 to 6887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
381.4 bits(826) 0.0 176/188(94%) 0/188(0%) Minus/Minus
Query       77  FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*SFHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KXXXXXXXXXXXLNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNEPPLLPRSSFQWIALPAGTHRKPLSHNCQYISPGYPSP*QCISAPRL  640
                FGMGPRTAHQNLKNLGRTSTHQVY LSLALHTLENKA*CTFL*D*GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAHYE*LLEI*AH*K LQTQMLTML*LNYS*YSNNAKYLRPNQ LQIGLKLSISSYACS*PRI*HNYN PPLLPRSSFQW+ALP G HR+PLSHNCQY SPG PSP*QCISAPRL
Subject   6324  FGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRL  6887

Range 4: 6327 to 6887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
366.3 bits(793) 0.0 175/187(94%) 0/187(0%) Plus/Plus
Query       80  SGSGYALLGRWVTWRNVLTIMR*RFPMRTGWESYPLK**PRKKWRLIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*EFSVCLNFQ*SFIVCLXXXXXXXXGS*FPRMKTS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK  640
                SGSGYALLGRW TWR VLTIMR*R PM T WES PLK**PRKKWR IIIVLDSWSGTSIR*DAQFQAYLK LIRP*VFGII*VL*II*LKHCQHLSL* FSVCLNFQ*SFIVCLVVVKVV**GS*FPRM+ S*LSQQVFQTALISQEGTLSLILQGVQCQGK IYLMSTCPSKIFQVLMCCSRTHTK
Subject   6327  SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTK  6887

Range 5: 6469 to 6666 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 66/66(100%) 0/66(0%) Minus/Minus
Query      222  GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL  419
                GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL
Subject   6469  GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL  6666

Range 6: 6715 to 6885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 56/57(98%) 0/57(0%) Minus/Minus
Query      468  WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF  638
                WYGSENSTSKPEKSWTDKYSSSI TFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF
Subject   6715  WYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF  6885

Range 7: 6331 to 6414 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 27/28(96%) 0/28(0%) Minus/Minus
Query       84  RYA*ETSIA*LSIHFSRLPISLAMHIRS  167
                RYA*ETSIA*LSI FSRLPISLAMHIRS
Subject   6331  RYA*ETSIA*LSIQFSRLPISLAMHIRS  6414

Range 8: 6331 to 6885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
300.7 bits(650) 0.0 173/185(94%) 0/185(0%) Plus/Plus
Query       84  GADMHC*GDG*PGEMY*QLCDRGFLCVPAGRAIH*NXXXXXXXXXXXXC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FXXXXXXXXXCRSFQCA*IXXXXXXCAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVXXXXXXXXCAVLGPIP  638
                GADMHC*GDG PGE+Y*QLCDRG LC+P GRA H*NDDRGRSGG L*LC*ILGQEQA*DEMLNFRPI*S *LGLKYLALFEYYE*FS*SIVSI*VCR FQCA*ISSSHS*CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH*ALFSRVCSARES YT**VLVRPRFFRF*CAVLGPIP
Subject   6331  GADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIP  6885

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 6672 to 7019 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 48/116(41%) 0/116(0%) Plus/Plus
Query      292  ID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  639
                + * +   + +SIM  ++  L+ F F      L  P+V+H+VPGSGK++LI++ +  + N  A T GVP+  N+ G YIK    G    G  +ILDEYLS +  +GF+ LFSDPYQ
Subject   6672  VS*HIRFGYRVSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQ  7019

Range 2: 6381 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 39/68(57%) 0/68(0%) Plus/Plus
Query       85  ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  288
                ER+ IARE  NLE CIDNYAIEVS AY++GE     +T +EV+AHYNCVRF+V++ H ++ +I  LF+
Subject   6381  ERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK  6584

Range 3: 6857 to 7018 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 22/54(41%) 0/54(0%) Minus/Minus
Query      477  WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKA  638
                W GSE     P +   DKYSS +   P    P    L+Y+P  L  SGTP V A
Subject   6857  W*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTA  7018

Range 4: 6392 to 6460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 16/23(70%) 0/23(0%) Minus/Minus
Query       96  YA*ETSIA*LSIHFSRLPISLAM  164
                YA ETSIA*LSI FS+  +SLA+
Subject   6392  YAQETSIA*LSIQFSKFLVSLAI  6460

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 6230 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 41/70(59%) 0/70(0%) Plus/Plus
Query       85  ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI  294
                ER+ IA E  NL+ CIDNYAIEVSYAY +GE   + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I
Subject   6230  ERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 2: 6482 to 6799 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 44/106(42%) 0/106(0%) Plus/Plus
Query      322  LSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  639
                +++M+ +V  L  + F      ++  +++H+VPGSGK++LIRE ++ +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS +  +GFD  FSDP+Q
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQ  6799

Range 3: 6230 to 6394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 22/55(40%) 0/55(0%) Minus/Minus
Query       85  VPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPL  249
                V + E +T+++ +HFF       *L   V I NL  IIVN  L+V    SN  PL
Subject   6230  VLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNAILEVVCFNSNLKPL  6394

Range 4: 6637 to 6792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 19/52(37%) 0/52(0%) Minus/Minus
Query      477  GSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKA  632
                GSE   S P  +  ++YSSS+   P    P     M  P   G SG+P  KA
Subject   6637  GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKA  6792

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 5

Range 1: 5874 to 6092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.2 bits(245) 0.0 47/73(64%) 0/73(0%) Plus/Plus
Query       85  ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*A  303
                ER+CIA+E  NL  CIDNYAIEVSYAY+LGEL++  M EEE EA YNCVR +V+NKH ++ SIS LF+ I *+
Subject   5874  ERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*S  6092

Range 2: 6141 to 6359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 44/73(60%) 0/73(0%) Plus/Plus
Query      319  YLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPY  537
                YL  M+ LV     F F  V SVL+ PV+ H VPG+GKS+LIRELI+ D  FIAFTAG PD PNL+GR IK Y
Subject   6141  YLKYMDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY  6359

Range 3: 5867 to 5953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 18/29(62%) 0/29(0%) Minus/Minus
Query       78  YA*ETSIA*LSIHFSRLPISLAMHIRSPT  164
                YA*ETS+A*LSI   +L +S A+H RS T
Subject   5867  YA*ETSMA*LSIQLIKLFVSFAIHRRSST  5953

Range 4: 6293 to 6352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 13/20(65%) 0/20(0%) Minus/Minus
Query      471  LMYLPVRLGLSGTPAVKAMK  530
                L+  P+R G SG+PAVKAMK
Subject   6293  LIARPLRFGGSGSPAVKAMK  6352

Range 5: 6011 to 6082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 13/24(54%) 0/24(0%) Minus/Minus
Query      222  IASNRPEIEHLILCLFLTKNLTQL  293
                I+ N+ EIE    CLF T  LTQL
Subject   6011  ISWNKSEIEDFK*CLFFTMILTQL  6082

Hop mosaic virus, complete genome

Sequence ID: Length: 8550 Number of Matches: 3

Range 1: 5738 to 5941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 40/68(59%) 0/68(0%) Plus/Plus
Query       85  ERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  288
                ER+CIA E+ NL  CIDNYAIEV+YAY LGE ++  M+EEEV A YNCVR ++RNKH ++  + G++E
Subject   5738  ERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE  5941

Range 2: 6022 to 6231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 35/70(50%) 0/70(0%) Plus/Plus
Query      331  MNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYS  540
                M+ +V  L  F F  + + L+ P+V+H VPG+GKS+LIRELI+ D  F+AFTAG+ D P+LTG +I+ +S
Subject   6022  MDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTGNWIRKWS  6231

Range 3: 6232 to 6327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 12/32(38%) 0/32(0%) Plus/Plus
Query      544  GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  639
                G A  G   +LDEY  + +      LF DP Q
Subject   6232  GEASSGSFLVLDEYTLLTELPPAYALFGDPVQ  6327

Nucleotide Sequence (230 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
23
46
69
92
115
138
161
184
207
230

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 6659 to 6886 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(368) 0.0 72/76(95%) 0/76(0%) Minus/Plus
Query        2  SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  229
                SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ
Subject   6659  SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  6886

Range 2: 6660 to 6887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 69/76(91%) 0/76(0%) Plus/Minus
Query        1  FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLQNKT**TFL*DYGCLEHLL*KL*SFHPRKLAPLLNYFYHYQAH  228
                FGMGPRTAHQNLKNLGRTSTHQVY LSLALHTL+NK * TFL*D GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAH
Subject   6660  FGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAH  6887

Range 3: 6689 to 6886 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 60/66(91%) 0/66(0%) Plus/Minus
Query        2  LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPCRIRLNEPSCEITAVWNTCCESYEVFILGN*LPY  199
                LVWVREQHIKT*KILDGQVLIKYI+FPWHCTP RIRLN PSCEI AVWNTCCESYE+ ILGN*LPY
Subject   6689  LVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY  6886

Range 4: 6660 to 6887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 71/76(93%) 0/76(0%) Minus/Plus
Query        1  VCLXXXXXXX*GS*FPRMKTS*LSQQVFQTAVISQEGSLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK  228
                VCLVVVKVV**GS*FPRM+ S*LSQQVFQTA+ISQEG+LSLILQGVQCQGK IYLMSTCPSKIFQVLMCCSRTHTK
Subject   6660  VCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTK  6887

Range 5: 6658 to 6885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 71/76(93%) 0/76(0%) Minus/Plus
Query        3  *CAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*VLFCRVCSARESEYT**VLVXXXXXXX*CAVLGPIP  230
                *CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH* LF RVCSARES YT**VLVRPRFFRF*CAVLGPIP
Subject   6658  *CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIP  6885

Range 6: 6715 to 6885 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 52/57(91%) 0/57(0%) Plus/Minus
Query        3  WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPAE*DLMNLPVRLRLSGTPAVKAMKF  173
                WYGSENSTSKPEKSWTDKYSSSI TFPGTAHP E* LM LPVRL LSGTPAVKAMKF
Subject   6715  WYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF  6885

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 6760 to 6987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.3 bits(176) 0.0 36/76(47%) 0/76(0%) Minus/Plus
Query        2  SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  229
                +VPGSGK++LI++ +  + N  A T GVP+  N+ G +IK    G    G  +ILDEYLS +  +GF+ LFSDPYQ
Subject   6760  AVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQ  6987

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 1

Range 1: 6792 to 7019 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.3 bits(176) 0.0 36/76(47%) 0/76(0%) Minus/Plus
Query        2  SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  229
                +VPGSGK++LI++ +  + N  A T GVP+  N+ G +IK    G    G  +ILDEYLS +  +GF+ LFSDPYQ
Subject   6792  AVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQ  7019

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 1

Range 1: 6755 to 6982 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.3 bits(176) 0.0 36/76(47%) 0/76(0%) Minus/Plus
Query        2  SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  229
                +VPGSGK++LI++ +  + N  A T GVP+  N+ G +IK    G    G  +ILDEYLS +  +GF+ LFSDPYQ
Subject   6755  AVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQ  6982

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 6572 to 6799 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.0 bits(173) 0.0 37/76(49%) 0/76(0%) Minus/Plus
Query        2  SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  229
                +VPGSGK++LIRE ++ +    AF+ G PD  N+ GR+IK   +G    G   ILDEYLS +  +GFD  FSDP+Q
Subject   6572  AVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQ  6799

Nucleotide Sequence (348 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
348

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
212.8 848.1 44% 1.036e-54 53% NC_001948
57.4 183.0 32% 2.464e-18 42% NC_014821
57.4 90.6 24% 2.679e-12 37% NC_025388
49.6 120.0 19% 6.122e-16 39% NC_009892
57.0 91.0 22% 1.964e-12 40% NC_028975

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 7010 to 7342 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.8 bits(458) 0.0 86/111(77%) 0/111(0%) Minus/Plus
Query       14  IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSTTCKLGQNCHSVDDRLGHWLGAAFPKKVK  346
                I+GSPF L VEGVLICFGKEAVDLAVAHNS FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFS  C+LG+N +S+D  LGHW  AAF ++VK
Subject   7010  IVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVK  7342

Range 2: 7015 to 7344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 73/110(66%) 0/110(0%) Plus/Minus
Query       12  NLTFLGNAAPSQCPSLSSTE*QFWPNLQVVEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANSNGEP  341
                +LT   NAA +QCPS  S E  F PN Q  EKA +CMIINF LCLVAAM*NQCLSS VGSLDF +VTT  V P TSQG+L  ELCATA+STAS PK I TPST++  G+P
Subject   7015  DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDP  7344

Range 3: 7026 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 72/110(65%) 0/110(0%) Minus/Plus
Query        1  LS*LWRAS*FVLERRQLIWRLRIIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS  330
                L *+ +  *+ L RRQ I  LR    SN+LV+ EV  L    +*NQEI+P  I TG TLL QD  R+**SCS+MPFQQPANWAKT+TPLT+GLGIGLVLHFLRKSNLPYS
Subject   7026  LH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYS  7355

Range 4: 7010 to 7354 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 70/115(61%) 0/115(0%) Plus/Minus
Query        2  EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIMRNRQINCLLSKTN*DALHS*LKR*ANN  346
                E G+FDFLRKCST PMPKP VNGV V AQFAGC*KGI LHDYQ L +SC SNV+PV I+ G IS*FQ   ++K  TS  TR FE  ++RN +I+CLL+K  *   + * KR  +N
Subject   7010  E*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHN  7354

Range 5: 7050 to 7343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 52/98(53%) 0/98(0%) Plus/Minus
Query       13  I*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SWNYAQPPNQLPPFQNKL  306
                I*L  +MQH+ NAQA  Q S  F PI RLLKRH TA*LS S  VL QQC+TSAY    DLLIS   +    +L  HK +*  + AQ  + LPP+Q+ L
Subject   7050  I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSIL  7343

Range 6: 7051 to 7278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 40/76(53%) 0/76(0%) Minus/Plus
Query       78  NLFWKGGS*FGGCA*FQLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFNNLQIGPK  305
                N+ W GGS    CA   +Q +L*  R + *  +  EIKRS+   *ALVLHCC KT  E+DNHAV+CLF++L+IG K
Subject   7051  NMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQK  7278

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 7139 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 21/42(50%) 0/42(0%) Minus/Plus
Query      191  EGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSR  316
                EG +IC  KE  D    H+  +KLPC+VRGATFD VT +  +
Subject   7139  EGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 2: 7347 to 7451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 17/35(49%) 0/35(0%) Minus/Plus
Query        7  MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLP  111
                MPF QP +++K+V P+ IG  + LVL  L +S LP
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLP  7451

Range 3: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/15(53%) 0/15(0%) Minus/Plus
Query      119  FYIAATRHRKKLIIM  163
                +Y+A TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 4: 7126 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 28/67(42%) 0/67(0%) Plus/Minus
Query      129  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANS  329
                N  LCLV+A      ++      + KVT S VAPRT QG+L    C   KS+ SF +QI  PS + S
Subject   7126  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS  7326

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 2

Range 1: 6598 to 6756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 20/53(38%) 0/53(0%) Minus/Plus
Query      188  IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRD  346
                I  + FE ++E  ++C+ KE  DL   H +++K  C++RG+TFD+VT + S +
Subject   6598  IFETVFEGSIEDQIVCYEKEVFDLLDRHGADYKKDCQIRGSTFDIVTFITSSE  6756

Range 2: 6875 to 6964 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 11/30(37%) 0/30(0%) Minus/Plus
Query        7  PANWAKTVTPLTIGLGIGLVLHFLRKSNLP  96
                P +  + + P+ +GLG+G+V+  L +S LP
Subject   6875  PPDNTRVLLPIAVGLGVGIVIWCLTRSTLP  6964

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 3

Range 1: 6923 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 19/49(39%) 0/49(0%) Minus/Plus
Query      200  IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLL  346
                I  + F   +EG +IC  K   D    ++  ++LPC+VRG+TF+VVT +
Subject   6923  IFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 2: 7163 to 7273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 17/37(46%) 0/37(0%) Minus/Plus
Query        1  MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS  111
                MP  QP +++K+V PL IGL +G+V+  L +S LP++
Subject   7163  MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHA  7273

Range 3: 7109 to 7150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/14(64%) 0/14(0%) Minus/Plus
Query      119  YIAATRHRKKLIIM  160
                YIA TRH KK+ I+
Subject   7109  YIALTRHSKKIQIL  7150

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 2

Range 1: 6613 to 6756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 19/48(40%) 0/48(0%) Minus/Plus
Query      188  FELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRD  331
                FE +VEG ++C+ KE  +L   H +++K  C++RG+TFD+VT + + +
Subject   6613  FEGSVEGQIVCYEKEIFELLDRHGADYKRDCQIRGSTFDIVTFITASE  6756

Range 2: 6875 to 6964 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 12/30(40%) 0/30(0%) Minus/Plus
Query        7  PANWAKTVTPLTIGLGIGLVLHFLRKSNLP  96
                P +  K + P+ +GLG+G+V+  L +S LP
Subject   6875  PPDNTKVLLPIAVGLGVGVVIWCLTRSTLP  6964

Nucleotide Sequence (593 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
60
120
180
240
300
360
420
480
540
593

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
445.1 2398.2 39% 2.633e-124 93% NC_001948
286.5 650.0 33% 1.399e-76 28% NC_009892
287.4 703.8 59% 7.411e-77 29% NC_028975
285.6 704.6 46% 2.64e-76 32% NC_025388
283.3 567.7 29% 1.292e-75 33% NC_012038

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 5165 to 5749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
445.1 bits(965) 0.0 188/195(96%) 0/195(0%) Plus/Minus
Query        2  LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*L  586
                LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLR KL +RF+KHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGS NLGLRKFETLSDSH+EGY*IISFMPWVNAFKPLTCIAQLLTSST MLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*L
Subject   5165  LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*L  5749

Range 2: 5165 to 5749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
432.2 bits(937) 0.0 189/195(97%) 0/195(0%) Minus/Plus
Query        2  ESECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ  586
                ESECSNEEWFKTHIPLSNLESTRAR VGKMALKEYREVRCGYE+TQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHN IMF EAV+EFEAK+ASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ
Subject   5165  ESECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ  5749

Range 3: 5163 to 5579 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
337.9 bits(731) 0.0 129/139(93%) 0/139(0%) Plus/Minus
Query      172  QTPAPLHQT*WDYDWLSMGFWIGKNLIRISHMVWPASVWQPQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHLYAHQRTVESLHNHNAPPDTLSRPFYPPSWPWLTPNYSGGCGF*TILHLSILTP  588
                QTP PLH+T*W+YDWLSMGFWIGKNLIRISHMVWPASVWQ QPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFH YAHQR VES HNHNAPPDTLSRPFYPP+WPWLTP+YS GCGF*TILHLSILTP
Subject   5163  QTPVPLHET*WNYDWLSMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTP  5579

Range 4: 5626 to 5748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 40/41(98%) 0/41(0%) Plus/Minus
Query        3  WKQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP  125
                WKQARVCPALATLSLLSNLVQCCDFIKIRATSN+QSLHDLP
Subject   5626  WKQARVCPALATLSLLSNLVQCCDFIKIRATSNNQSLHDLP  5748

Range 5: 5257 to 5748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.6 bits(750) 0.0 153/164(93%) 0/164(0%) Minus/Plus
Query        3  LERVSGGALWL*SDSTVL**A*RWNW*ATEQCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*GCQTEAGQTIWEILIRFFPIQNPIESQS*SHHV**SGAGV*SEGG**ECSNYRESCR*VMQGLAIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLP  494
                LERVSGGALWL*+DST+L**A* WNW*ATEQCM*EV*KHLPKA*RK*FNNLP+GCPKASQIFEAPG* CQTEAGQTIWEILIRFFPIQNPIESQS* HHV *SG GV* E G**ECSNYRESCR*VMQGL IRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLP
Subject   5257  LERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLP  5748

Range 6: 5164 to 5208 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      543  GVRMLK*RMV*NPHP  587
                GVRMLK*RMV*NPHP
Subject   5164  GVRMLK*RMV*NPHP  5208

Range 7: 5166 to 5690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
350.2 bits(758) 0.0 167/175(95%) 0/175(0%) Minus/Plus
Query       61  SQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNSSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLRLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCLMKRCGSLKXXXXXXXXXXXRIMQVGHAGIGY*MLL*FL*SHNTV  585
                SQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LN+SLMSI VELVSN*AMHVRGLKAFTQGIKEMIQ*PS WLSESVSNFRSPRL+LPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSC MKR  SL+RRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTV
Subject   5166  SQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMKRYRSLRRRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTV  5690

Range 8: 5164 to 5577 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
261.3 bits(564) 0.0 130/138(94%) 0/138(0%) Plus/Minus
Query      174  NSRTASSNMMGL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHAXXXXXXXXXXXXXKNC*VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSSFEHSDS  587
                NS TAS NMM L*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTA+RKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*V S*PQRTSRYSFKAILPT LALVDS+LL+GMWVLNHSSFEHSDS
Subject   5164  NSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNHSSFEHSDS  5577

Range 9: 5631 to 5750 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 39/40(98%) 0/40(0%) Plus/Minus
Query        1  VGSKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLIANPCMT  120
                VGSKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLI NPCMT
Subject   5631  VGSKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLITNPCMT  5750

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 8

Range 1: 5069 to 5647 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
286.5 bits(619) 0.0 126/193(65%) 0/193(0%) Minus/Plus
Query        2  ECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ  580
                E   E+WFKTHIP+  LE+ RAR V K+  KE RE R G+EVT+QF DEH    G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL +FL  IPL   H+  +  +AV +FE K+ SKSAATIENH+GRS RDW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQ
Subject   5069  EIIQEDWFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQ  5647

Range 2: 5248 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 32/59(54%) 0/59(0%) Plus/Minus
Query      225  GILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHA  401
                GI  RK   +N P G+A L+LA S  G+E    F TAIR V ES PLCLG*++S LS A
Subject   5248  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAA  5424

Range 3: 5438 to 5647 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 29/70(41%) 0/70(0%) Plus/Minus
Query        2  LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIM  211
                L+ S+GLPS   SKP+VK S  L  H+N   +  PIPA    M+   C TL   L FK+   F     IM
Subject   5438  LKTSQGLPSLCTSKPIVKLSAELGFHEN*CFVDWPIPARTP*MVFNGCSTLAEFLLFKIIDSF*HEIAIM  5647

Range 4: 5080 to 5205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 24/42(57%) 0/42(0%) Plus/Minus
Query      444  NC*VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSS  569
                NC VTS*P   S  SF +IL T LAL  S+   GM VLN SS
Subject   5080  NCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLNQSS  5205

Range 5: 5078 to 5395 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 35/106(33%) 0/106(0%) Plus/Minus
Query      254  EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI  571
                EF  W   P F + N  L + E   +SH E   + + MP +N+F P +C+  L     +M + +LLSH +T   L      +F HPP P  L+    +V F+P F+
Subject   5078  EFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFL  5395

Range 6: 5524 to 5643 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 24/40(60%) 0/40(0%) Plus/Minus
Query        6  KQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP  125
                KQA+VCPA A  + LSNLVQ  DF+KI A S  QSL + P
Subject   5524  KQAKVCPAFALRNRLSNLVQSWDFMKISALSTGQSLLERP  5643

Range 7: 5497 to 5631 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 19/45(42%) 0/45(0%) Minus/Plus
Query       18  ECSNYRESCR*VMQGLAIRCCSDFYEVTTLY*I*QQA*SS*SWAN  152
                EC N+ +  R   QGLA R  ++F+E+ TL+*+*Q       WAN
Subject   5497  ECCNH*KPFRAF*QGLASRQSTNFHEIPTLH*V*QSVSKCKGWAN  5631

Range 8: 5130 to 5399 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 25/90(28%) 0/90(0%) Minus/Plus
Query      250  GPGGWVKWP*KSIGRCVVVMK*LNSSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLRLPN*GGPNHMGNSY  519
                G GG +K+  + +    +VM+*L++   +I     +     ++G K F +GI+      S WL    S   +  L++ N*G   H  NS+
Subject   5130  GQGGCIKYLQRKLESLGLVMR*LSNLSTNIAKIQANRSPTQLKGTKLFIRGIRAPTLSRS*WLLRKGSLSPNQVLKVLN*GELCHSANSF  5399

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 9

Range 1: 4754 to 5329 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.4 bits(621) 0.0 127/192(66%) 0/192(0%) Minus/Plus
Query        5  ECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACF  580
                E  NE WFKTH+PL  LES RA  V ++  KEYREVRCG E T QF D+H   +   L+NA ERFE+IYPRH+G+DS+TFLMAV+KRL FS+P VE+AKL RAKPYGKFLL+ FL +IPLK   +  +F  A REFE K+ SKSAA IENH+GRSCRDWL DV  IFMKSQ C+K+DNR R AKAGQTLACF
Subject   4754  EVKNEPWFKTHLPLFELESIRAGWVHRIMNKEYREVRCGSETTAQFPDDHPNRSKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSRPSVESAKLNRAKPYGKFLLNEFLKRIPLKGGLDSALFSRAKREFEEKKTSKSAAVIENHSGRSCRDWLADVGFIFMKSQFCSKWDNRFRDAKAGQTLACF  5329

Range 2: 4762 to 5115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 66/118(56%) 0/118(0%) Plus/Minus
Query      219  FNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHAXXXXXXXXXXXXXKNC*VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSSF  572
                F+GIL R   NKNFP GLA  SLA ST G E L  F TAI+KV ES PLCLG*M SNLS A           SS NC V S PQRTS YS   I  T  AL+DS   +G  VLN  SF
Subject   4762  FSGILFRNSFNKNFP*GLALFSLADSTDGREKLSLFFTAIKKVTESLPLCLG*MASNLSAAFAKVILDLFGWSSGNCAVVSEPQRTSLYSLFIIR*THPALIDSSSNKGRCVLNQGSF  5115

Range 3: 5153 to 5332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 27/60(45%) 0/60(0%) Plus/Minus
Query        2  LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLP  181
                ++ S+GLP FS SK +V   T L LHK +S+I *PIPA* + +I       T    FK P
Subject   5153  MKTSQGLPRFSISKSIVPL*TELALHKYESDIS*PIPA*ASRVIFNYSSAFTCFFFFKFP  5332

Range 4: 4743 to 5084 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 36/114(32%) 0/114(0%) Plus/Minus
Query      250  IRISHMVWPASVWQPQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHLYAHQRTVESLHNHNAPPDTLSRPFYPPSWPWLTPNYSGGCGF*TILHLSILTPV  591
                I+  H VWP S WQ +    K   +F  P  +  +H+LYA  +  Q   +H        L  HQ TV    + N  P T    F  P    LTP    G  F*T  H  +  P+
Subject   4743  IKTFHKVWPYSAWQIRQTVEKSLASFSLPLKK*RSHYLYAWDRWPQIFQLHLPRLFWTCLDGHQETVLLSRSRNGLPCTPCSLFDEPIQL*LTPVQIKGDVF*TRAHF*LPPPI  5084

Range 5: 5209 to 5328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 24/40(60%) 0/40(0%) Plus/Minus
Query        6  KQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP  125
                KQARVCPALA+L+ LS+  Q   FI +  TS SQSLH+ P
Subject   5209  KQARVCPALASLNRLSHFEQNWLFINMNPTSASQSLHERP  5328

Range 6: 4763 to 5083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 31/107(29%) 0/107(0%) Plus/Minus
Query      251  *EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI  571
                *+  I FGP Q G  +   RK   L   H +   + + MP ++  K  +CI Q       M+I++L       T  P+L   +  +P    *LQ    ++ FKP  I
Subject   4763  *KLSIRFGPIQLGRFDRRSRKA*PLFHCH*KSDGVTTSMPGIDGLKSFSCICQGYFGPVWMVIRKLCCCLGAATDFPVLLVHYSMNPSSSD*LQFK*REMCFKPGLI  5083

Range 7: 5214 to 5327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 16/38(42%) 0/38(0%) Plus/Minus
Query        7  SKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLIANPCMT  120
                +K G A L* L*  C     + +S*   +H +ANPCM+
Subject   5214  NKPGSAPL*HL*IDCPTLNRIGSS*I*IRHQLANPCMS  5327

Range 8: 4930 to 5085 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 20/52(38%) 0/52(0%) Minus/Plus
Query      249  QCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*GCQTEAGQTIWEILI  404
                +C *++* HL +A*R *  +   G  K +++F      CQ E GQT+W++ I
Subject   4930  KCS*KI*GHLSQA*R**LRHFFNGSEKEAKLFSTVCRICQAE*GQTLWKVFI  5085

Range 9: 4752 to 4907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 16/52(31%) 0/52(0%) Minus/Plus
Query      427  QNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNSSLMSIE  582
                + ++M  GLK  S  + WSQ    G+++   +S G+ V   +  +S LM+I+
Subject   4752  RKSKMSPGLKHISLYLNWSQSELDGFIE**TRSTGKSVAAPRQQHSFLMTIQ  4907

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 8

Range 1: 4754 to 5329 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
285.6 bits(617) 0.0 124/192(65%) 0/192(0%) Minus/Plus
Query        5  ECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACF  580
                E  +E WFKTH+PL  LES RA  V ++  +EYREVRCG E T QF D+H  G    L+NA ERFE+IYPRH+G+DS+TFLMAV+KRL FS+P  E+AKL RAKPYGKFL+  FL +IPL+ + +PI+F +A R+FE K+ SKSAA IENH+GRSCRDWL DV  IFMKSQ C+K+DNR R AKAGQTLACF
Subject   4754  EVKHEPWFKTHLPLFELESIRASWVHRIMNREYREVRCGSETTTQFPDDHPSGAKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSQPSKESAKLNRAKPYGKFLVSEFLKRIPLRGNLDPILFAKAKRDFEEKKTSKSAAVIENHSGRSCRDWLADVGFIFMKSQFCSKWDNRFRDAKAGQTLACF  5329

Range 2: 4933 to 5148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 40/72(56%) 0/72(0%) Plus/Minus
Query      186  ASSNMMGL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHA  401
                A +  +G  L  NGIL R    +NFP G A  SLA S  G+E L  F TAIRKV ES PLCLG M SNLS A
Subject   4933  AFAKRIGSRLPLNGILLRNSLTRNFP*GFALFSLADSFDGWEKLSLFLTAIRKVTESLPLCLGYMASNLSAA  5148

Range 3: 4765 to 4881 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 26/39(67%) 0/39(0%) Plus/Minus
Query      453  VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSS  569
                V S PQRTSRYS   IL T LAL+DS   RG WVLNH S
Subject   4765  VVSEPQRTSRYSRFIIL*TQLALMDSNSKRGRWVLNHGS  4881

Range 4: 5209 to 5328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 22/40(55%) 0/40(0%) Plus/Minus
Query        6  KQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP  125
                KQA+VCPA A+L+LLS+L Q   FI ++ TS +QS H+ P
Subject   5209  KQAKVCPAFASLNLLSHLEQNWLFINMKPTSANQSRHERP  5328

Range 5: 4763 to 5080 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 39/106(37%) 0/106(0%) Plus/Minus
Query      254  EFPIWFGPPQFGSLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI  571
                E P+ F P Q G L   L K +   D H +G *I S +PWV  FK L CI Q    S  ++I++L   F T THL I    +  +P      Q  +  +GF+P+F+
Subject   4763  ELPVGFRPVQLGRLL*WLGKTQPFFDCH*KGD*ITSPVPWVYGFKSLCCICQSNFRSAGVIIRKLSCGF*TATHLTIFSIHYPVNPACSNGFQFKKRQMGFEPWFM  5080

Range 6: 5108 to 5332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 29/75(39%) 0/75(0%) Plus/Minus
Query        2  LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIMTGFQW  226
                ++AS  LP     K VV   T L LHK ++NI  PIPA  T MI    CT    L  K+     K D +    QW
Subject   5108  VKAS*SLPCLCIPKSVVPLGTELALHKYETNIGQPIPARTTRMIFNYSCTFACFLFLKVSLCLRKEDRVQIAPQW  5332

Range 7: 4752 to 5273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 56/174(32%) 0/174(0%) Minus/Plus
Query       61  QNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNSSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLRLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCLMKRCGSLKXXXXXXXXXXXRIMQVGHAGIGY*MLL*FL*SHNTV  582
                + + M +G KP    + W+     G+     ++I RCV V K   + LM    E      M  R LK +TQG  E+IQ P  W S+    F + +  LP+* G N  G+S *+    + H*  +   S L ++  +L++R+  +VQ   +I+ V  AGIG+ ML+ +L*  ++V
Subject   4752  RRSNMNHGSKPICLFLNWNPLEQAGFTG**IENIVRCVAVQKPQLNFLMITPAERKLLWQMQQRDLKPYTQGTGEVIQSPF*WQSKKG*VFPNHQRSLPS*TGRNPTGSSL*VSFLKEYH*GAIWTLSSLRRQRETLRKRKQAKVQL*LKIILVVRAGIGWPMLVSYL*RASSV  5273

Range 8: 4930 to 5124 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 25/65(38%) 0/65(0%) Minus/Plus
Query      210  QCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*GCQTEAGQTIWEILIRFFPIQNPIESQS  404
                +C  E+* H+PKA  K*F++L  G  K ++ F      CQ E G+T+ E+       +N IE QS
Subject   4930  KCSREI*SHIPKAQGK*FSHLSNGSQKKAEFFPTIKGVCQAEQGETLREVPCE*VS*KNTIEGQS  5124

Helleborus net necrosis virus, complete genome

Sequence ID: Length: 8542 Number of Matches: 6

Range 1: 4562 to 5128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
283.3 bits(612) 0.0 124/189(66%) 0/189(0%) Minus/Plus
Query        2  EEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ  568
                E WFKTH+PL  +ES RA  V     KE REVR GY V+ QF DEH    G+ L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL  A+ YGK+LLD+FL  +PLKA HNP     +VR+FE K+ SKSAATIENH+GRSCRDWL DV LIFMKSQ CTKFDNR RVAKA Q++ CFQ
Subject   4562  EPWFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQ  5128

Range 2: 4729 to 4926 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 39/66(59%) 0/66(0%) Plus/Minus
Query      204  GL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHA  401
                GL  AFNG   +K S++ FP  LA  SLA ST G ENL+RF TAIRKV  S  LCLG*M S  S A
Subject   4729  GLCWAFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAA  4926

Range 3: 4907 to 5128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 33/74(45%) 0/74(0%) Plus/Minus
Query        2  LEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRFKLPHRFIKHDGIMTGFQ  223
                LEA+  L SF +++ VV+F   L LHK + +I *PIP   + M+ Y CCTLT LL F++ H       I+ GFQ
Subject   4907  LEANYRLRSFGHTESVVEFGANLGLHKYKPHIC*PIPTRASRMVFYCCCTLTCLLFFEISHTPGHEFRIVLGFQ  5128

Range 4: 4561 to 4677 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 18/39(46%) 0/39(0%) Plus/Minus
Query      453  VTS*PQRTSRYSFKAILPTLLALVDSKLLRGMWVLNHSS  569
                +T *P RTS +SF     T  A   S   RG  VLNH S
Subject   4561  LTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNHGS  4677

Range 5: 4562 to 4840 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 31/93(33%) 0/93(0%) Plus/Minus
Query      290  SLNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFF  568
                +LN   RK   L   HK+   I  F+PWVN FK L+ I +  +    +LI +L++H I   H  + F      P       +T+G+V F+P+F
Subject   4562  ALNHRFRKS*ALLHGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPWF  4840

Range 6: 5005 to 5127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 26/41(63%) 0/41(0%) Plus/Minus
Query        3  WKQARVCPALATLSLLSNLVQCCDFIKIRATSNSQSLHDLP  125
                WKQ   C ALAT +LLSNLVQ  DFI I  TS SQSL + P
Subject   5005  WKQTIDCAALATRNLLSNLVQIWDFINISPTSASQSLQERP  5127

Nucleotide Sequence (449 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
45
90
135
180
225
270
315
360
405
449

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
330.5 1826.1 40% 5.472e-90 91% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 1670 to 2116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
330.5 bits(715) 0.0 143/149(96%) 0/149(0%) Minus/Plus
Query        2  LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS  448
                LEATGQSKLFRFLVDDC MREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDC+VIKVYQ VTSQAILPEALLSLTKVFVRDSDSKGVSIP LVSRNEL ELA PANSALEEPQSVDCNAGRVQASVSSS
Subject   1670  LEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSS  2116

Range 2: 1671 to 2117 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
327.3 bits(708) 0.0 140/149(94%) 0/149(0%) Plus/Minus
Query        1  GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRPIWEWKHPLSQNP*QKLWSS*AEPQEVLPVMLQTDKL**HHNQDQQRTMPCPSEI*GWTFA*GETIGGHKN*NNE*GLLCA*KGPPYRNFLPHA*HSRPPKT*TILTAQWLL  447
                GNLKRLLEPCLH NQLIEAPQGLN*LGELV LAHFSRPIWEWKHPLSQNP*Q+LWSS*AEPQEVLPVMLQ DKL** HNQDQQRTMPCPSEI*GWTFA*G TIGGHKN*+NE*GLLCA*KGPPYRNF PHA*HSRPPKT*TILTAQ LL
Subject   1671  GNLKRLLEPCLHYNQLIEAPQGLN*LGELVPLAHFSRPIWEWKHPLSQNP*QRLWSS*AEPQEVLPVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN*SNE*GLLCA*KGPPYRNF*PHA*HSRPPKT*TILTAQ*LL  2117

Range 3: 1670 to 2116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
318.1 bits(688) 0.0 137/149(92%) 0/149(0%) Plus/Minus
Query        2  GT*NACLNPACIAIN*LRLLKG*ISWES*FI*LISRDQYGNGNTL*VRIPDKNFGQAKQSLRKYCL*CYKLINFDDITIKISKGRCPVLQKFEVGPLPKEKPLEATRIKTMSEGFYVLKKAHLIGTSYLTHNTVVHQKPEQF*LPSGF*  448
                GT*NACLNPACI IN*LRLLKG*ISW S*F+*LISRDQ GNGNTL*VRIPDK+FGQAKQSLRKYCL*CYKLINFD++TIKISKGRCPVLQKFEVGPLPKE+PLEATRIK MSEGFYVLKKAHLIGTS LTH+TVVHQKPEQF*LPS F*
Subject   1670  GT*NACLNPACITIN*LRLLKG*ISWVS*FL*LISRDQSGNGNTL*VRIPDKDFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LPSSF*  2116

Range 4: 1671 to 2117 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
313.1 bits(677) 0.0 138/149(93%) 0/149(0%) Minus/Plus
Query        1  *KPLGSQNCSGFWWTTVLCVR*EVPIRWAFLST*KPSLIVLILVASNGFSLGKGPTSNF*RTGHRPLLILIVMSSKFISL*HHRQYFLRLCLA*PKFLSGILTQRVFPFPYWSREMS*MN*LSQLIQPLRSLNQLIAMQAGFKQAFQVP  447
                *K LGSQNCSGFWWTTVLCVR EVPIRWAFLST*KPSLI LILVASNG SLGKGPTSNF*RTGHRPLLILIV  SKFISL*HHRQYFLRLCLA*PK LSGILTQRVFPFP WSREMS* N*L+QLIQPLRSLNQLI MQAGFKQAFQVP
Subject   1671  *KLLGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSLSGILTQRVFPFPDWSREMS*RN*LTQLIQPLRSLNQLIVMQAGFKQAFQVP  2117

Range 5: 1669 to 2079 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.0 bits(559) 0.0 131/137(96%) 0/137(0%) Plus/Minus
Query       39  QSTD*GSSRAELAGRASSFSSFLETNMGMETPFESESLTKTLVKLSRASGSIACDVTN**TLMTSQSRSAKDDALSFXXXXXXXXXXXXHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS  449
                QSTD*GSSRAELAG ASS SSFLETN+GMETPFESESLTKTLVKLSRASGSIACDVT+**TL+TSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRI QSSTKNLNNFDCPVASS
Subject   1669  QSTD*GSSRAELAG*ASSSSSFLETNLGMETPFESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASS  2079

Range 6: 1669 to 2031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
247.1 bits(533) 0.0 110/121(91%) 0/121(0%) Minus/Plus
Query       87  ARSHWAVKIVQVFGGRLCYA*GKKFL*GGPF*AHKSPHSLF*FLWPPMVSP*AKVQPQISEGQGIVLC*S*L*CHQSLSVCNITGNTS*GSA*LDQSFCQGF*LKGCFHSHIGLEK*AK*T  449
                ARS+WAVKIVQVFGGRLCYA*G KFL*GGPF*AHKSPHSL *FLWPPMV P*AKVQPQISEGQGIVLC*S*L* +QSLS CNITGNTS*GSA*LDQS CQGF*LKGCFHS IGLEK*A+ T
Subject   1669  ARSYWAVKIVQVFGGRLCYA*G*KFL*GGPF*AHKSPHSLL*FLWPPMVPP*AKVQPQISEGQGIVLC*S*L*GYQSLSACNITGNTS*GSA*LDQSLCQGF*LKGCFHSQIGLEK*ARGT  2031

Range 7: 2074 to 2115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 13/14(93%) 0/14(0%) Minus/Plus
Query        3  *LQCRQGSSKRFKF  44
                *L CRQGSSKRFKF
Subject   2074  *L*CRQGSSKRFKF  2115

Nucleotide Sequence (561 letters)

Query ID:ds2016-56_47
Query definition:No definition line
Query length:468
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
561

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 3035 to 3580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
437.7 bits(949) 0.0 178/182(98%) 0/182(0%) Minus/Plus
Query       11  VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN  556
                +ETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLV+PDLSAPAISKQLEENAYAENEMIALFCIR+HVR IVITPEYEVSWKFGEGEWPLCGILCLKSN
Subject   3035  IETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSN  3580

Range 2: 3035 to 3580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
410.2 bits(889) 0.0 172/182(95%) 0/182(0%) Plus/Minus
Query       11  I*FKAKNSA*GPLTFPEFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIHQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY  556
                I*FKAKNS *GPLTFPEFPTNFIFWCDHY  YVVPNAE*CDHLILGISILFQLFRN WG*KIW +QALTLH+RSNTGL*GKSISAK KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYL GSGK*AF*TVNPQPASGSNWGLVRYYKN TFLHLLNVKVPFENFKRPQDFWTIICFY
Subject   3035  I*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFY  3580

Range 3: 3037 to 3588 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
407.0 bits(882) 0.0 174/184(95%) 0/184(0%) Minus/Plus
Query        3  RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGESRSFSPSHF*TIGRECLCRE*DDRIILHSVPRKTHSDHTRI*S*LEIRGR*VAPMRNSLP*IKSLP  554
                RNRLWSKSPGVF*SFQRGLSH*EDGGRF+FCNNVQGPN*IHWQVEGSQFRMLIFRIQ GIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFF *H*WTCPKGRYSIF GE*ALG+SRSFSPS+F*TIGRECLCRE*DDRIILHS PRK +SDHTRI*S*LEIRGR*VAPM NSLP*IKSLP
Subject   3037  RNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLP  3588

Range 4: 3117 to 3590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
357.1 bits(773) 0.0 149/158(94%) 0/158(0%) Plus/Minus
Query        1  VGSDLI*GKEFRIGATHLPRISN*LHILV*SL*VLRGTECRIMRSSHSRHKHSLPIV*KWLGLKDLDSPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN  474
                VGSDLI*GKEF IGATHLPRISN*LHILV*SL* LRG ECRIMRSSHSRHKHSLPIV*K LGLKDLD PSAHSP+KIEYRPLGQVHQC* KNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIP WIRKMSILNCEPSTCQWI*LGPCTLLQK N
Subject   3117  VGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLN  3590

Range 5: 3036 to 3074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query      517  QKTPGLLDHNLFL  555
                QKTPGLLDHNLFL
Subject   3036  QKTPGLLDHNLFL  3074

Range 6: 3291 to 3587 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.6 bits(449) 0.0 90/99(91%) 0/99(0%) Minus/Plus
Query        4  AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*DS**SHQNMKLVGNSGKVSGPYAEFFALNQIAA  300
                AIAFGILLVF LALMDLP*RPVFDL WRVSAW*+QIFQPQ FLNNWKRMLMPRMR*SHYSAFGTT*  **SHQNMKLVGNSGKVSGPY EFFALNQI +
Subject   3291  AIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITS  3587

Range 7: 3036 to 3242 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 67/69(97%) 0/69(0%) Minus/Plus
Query      349  *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV  555
                *KQIMVQKSWGLLKFSKGTFTLRRWRKV FL**RTRPQLDPLAG*GFTVQNAHFPDP+RYC*AARLRHV
Subject   3036  *KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHV  3242

Range 8: 3037 to 3423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.2 bits(566) 0.0 126/129(98%) 0/129(0%) Plus/Minus
Query      168  CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS  554
                CLE+AGAERSG TKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITK+EPSSIFLM*KSPLKTSKDPRTFGP*SVS
Subject   3037  CLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVS  3423

Range 9: 3469 to 3579 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 34/37(92%) 0/37(0%) Plus/Minus
Query       12  FDLRQRIPHRGHSPSPNFQLTSYSGVITMSLTWYRMQ  122
                FDLRQRIPHRGHSPSPNFQLTSYSGVIT+ LTW RMQ
Subject   3469  FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQ  3579

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 2

Range 1: 3193 to 3474 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 32/94(34%) 0/94(0%) Minus/Plus
Query      188  IFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLS  469
                + +   K  +   G LR H  EC  S   E L GC +     ++ D +++F V  DGNCFWHSVG L+  DG  +K  +    + + +  P LS
Subject   3193  VVIAFLKPKMTQGGELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLS  3474

Range 2: 3454 to 3588 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 19/45(42%) 0/45(0%) Minus/Plus
Query       59  LSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKF  193
                +  P +SKQLE N +AE E +A FC  Y ++L V+    E +W F
Subject   3454  VKCPRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIF  3588

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 3228 to 3470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 33/81(41%) 0/81(0%) Minus/Plus
Query      188  GRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLS  430
                G LR H  EC  S   E L GC +     ++ D F++F V  DGNCFWHSVG L+  DG  LK  +    + + +  P LS
Subject   3228  GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLS  3470

Range 2: 3450 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query       59  LSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKF  193
                +  P +SKQLE N +AE E +A FC  Y +RL V+    E +W F
Subject   3450  VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIF  3584

Range 3: 3215 to 3415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 26/67(39%) 0/67(0%) Plus/Minus
Query      243  FRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLI  443
                F+ SPS     PTECQKQ PS  T K  K S S         P + S+  +N HS  *  + P  +I
Subject   3215  FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHSSS*DRSSPPSVI  3415

Range 4: 3459 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 12/42(29%) 0/42(0%) Plus/Minus
Query       59  EFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGW  184
                E+P  F+    H +SY +  A+  +   L   + F LF   W
Subject   3459  EYPGAFLSCVKHIQSYPIVGAKIGNRFSLSPGVPF*LFT*SW  3584

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 3059 to 3283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 34/75(45%) 0/75(0%) Minus/Plus
Query      230  YKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIR  454
                YK  +    +LR H+ EC  S   E L GC +     ++ D+F+ F VPGDGNCFWHSVG L+  DG+ LK  +R
Subject   3059  YKPRLGKGMQLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLKGILR  3283

Range 2: 3284 to 3439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 15/52(29%) 0/52(0%) Minus/Plus
Query       59  ERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKF  214
                ER     ++   + +Q+  + +AE E +A FC  Y ++L V++    V+W F
Subject   3284  ERCGRNGITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIF  3439

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 3

Range 1: 3229 to 3417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 30/63(48%) 0/63(0%) Minus/Plus
Query      242  GRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALK  430
                G LR H  EC  S   E L GC +     ++ D F++F V  DGNCFWHSVG L+  DG  LK
Subject   3229  GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK  3417

Range 2: 3430 to 3585 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 20/52(38%) 0/52(0%) Minus/Plus
Query       59  ERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKF  214
                ++ +   +  P +SKQLE N +AE E +A FC  Y +RL V+    E +W F
Subject   3430  DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIF  3585

Range 3: 3216 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 26/67(39%) 0/67(0%) Plus/Minus
Query      243  FRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLI  443
                F+ SPS     PTECQKQLPS  T K  K S S         P + S+  ++ HS    L+ P  +I
Subject   3216  FKYSPSTPINGPTECQKQLPSASTSKEWKRSGSNFLLNMTEHP*SFSVRSDSSHSSSWDLSSPPSVI  3416