Queries
Nucleotide Sequence (147 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
118.4 | 494.9 | 33% | 3.169e-27 | 62% | NC_001948 | |
62.5 | 62.5 | 33% | 2.133e-10 | 46% | NC_003849 | |
63.4 | 63.4 | 31% | 1.13e-10 | 50% | NC_001658 | |
61.6 | 61.6 | 27% | 4.025e-10 | 62% | NC_028975 | |
61.1 | 61.1 | 27% | 5.53e-10 | 59% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 8134 to 8277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 3 LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA 146 LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA Subject 8134 LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 8277
Range 2: 8133 to 8276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 42/48(88%) | 0/48(0%) | Minus/Minus |
Query 2 AGGIPVSRWIFHTIFA*YMQNLCRVVTSLIIPAISDLFRSQKGLFPIK 145 AGGIPVSRW+FHTIFA*YMQNL VVTSLIIPAISDLFRSQ GL PI+ Subject 8133 AGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIR 8276
Range 3: 8136 to 8273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 30/46(65%) | 0/46(0%) | Plus/Plus |
Query 5 DWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDST 142 DW+ES+L*P+ + N W+ KG D+ ILHVLCKNRVE+PSGDGD+T Subject 8136 DWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTT 8273
Range 4: 8134 to 8277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 30/48(62%) | 0/48(0%) | Minus/Minus |
Query 3 SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ 146 S W PRLQMD+PHDFCIVHAKS H PY S F + VT+ TL+NQ Subject 8134 SWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQ 8277
Asian prunus virus 3 isolate Nanjing, complete genome
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Nucleotide Sequence (250 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
161.0 | 737.2 | 46% | 2.118e-39 | 66% | NC_001948 | |
40.5 | 77.3 | 32% | 1.159e-08 | 37% | NC_006948 | |
45.5 | 104.5 | 16% | 1.053e-11 | 45% | NC_014821 | |
48.7 | 81.9 | 22% | 5.233e-10 | 45% | NC_009892 | |
46.0 | 75.0 | 20% | 5.361e-08 | 39% | NC_012519 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7109 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 62/83(75%) | 0/83(0%) | Plus/Plus |
Query 1 LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 249 LPCEVRG+TF+VVTLLKSRDPTP+D+HWFYIAA RHR+KLIIMQ*+AFSAACELG+N++ ID WLGHW AAF ++VK + R Subject 7109 LPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFR 7357
Range 2: 7110 to 7358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 61/83(73%) | 0/83(0%) | Plus/Plus |
Query 2 FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 250 +LV+ EV L +*NQ I+P I TG TLL QD RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG Subject 7110 YLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG 7358
Range 3: 7112 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 56/82(68%) | 0/82(0%) | Minus/Minus |
Query 4 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTR 249 PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ ++K TS TR Subject 7112 PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR 7357
Range 4: 7111 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 57/82(70%) | 0/82(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG 248 L+ +LT NAA +QCPSQ SM F PNSQAAEKA +CM+INF LCL AAM*NQCLSSGVGSLDF +VTT V P TSQG Subject 7111 LNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQG 7356
Range 5: 7156 to 7344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 46/63(73%) | 0/63(0%) | Plus/Plus |
Query 48 EIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQI 236 EIK S+PR *ALVLHCC KT EID+HAV+CLFSSLRIG K H*+LAWAL CCI * SQI Subject 7156 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQI 7344
Range 6: 7155 to 7358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 45/68(66%) | 0/68(0%) | Minus/Minus |
Query 47 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS 250 P*+ I*L +MQH+ NAQAN QW F PIRRLLKRH TA* SIS VL QQC+TSAY G D LIS Subject 7155 P*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7358
Range 1: 7347 to 7460 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 17/38(45%) | 0/38(0%) | Plus/Plus |
Query 137 MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 250 MPF QP +++K++ P+ IG + LVL L +S LP G Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVG 7460
Nucleotide Sequence (783 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
530.3 | 1776.3 | 27% | 8.29e-150 | 44% | NC_001948 | |
74.4 | 112.1 | 12% | 2.07e-16 | 46% | NC_009892 | |
63.4 | 113.5 | 12% | 8.697e-17 | 46% | NC_028975 | |
64.3 | 111.2 | 12% | 4.026e-16 | 46% | NC_025388 | |
65.7 | 109.8 | 11% | 1.019e-15 | 48% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2555 to 3334 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
530.3 bits(1151) | 0.0 | 223/260(86%) | 0/260(0%) | Plus/Plus |
Query 2 VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD 781 V GNHCSLTI P EFFEMPRGMQ N+FHGVSNC GRVSLTFRRQKLEDDD IFI+PQVPIE NHEKLDR+MWQMGLHGIKKSIS+NGTSFTSDLCSCFSCHNFHKFKDLINNL+LALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSILVLEGALS+ETDYGPK+LGSFEVFKGDF IKK+E+GSIFVI+Y+AP+RSTG+LRVH S CSFSGS+E+LLGC IEA AD++I+DFNTF VPGDG+CFWHSVGFLLSTD Subject 2555 VGGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINNLRLALGAQGLGQCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD 3334
Range 2: 2554 to 3225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
375.0 bits(812) | 0.0 | 168/224(75%) | 0/224(0%) | Minus/Minus |
Query 1 QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST 672 QP+N SLDPENEH++L*TL+LPVDL GAL ITK+EPSSIFL+ KSPLKTS DP+ FGP*SVS +RAPSRT+IDCFLL GI++T DRP PVVANTTLSH P P APRANL+L +RSLNL*KL QEKQE RS+VKLVP IE+DFLIP RPICH+LRSSFS* SMGT G +KI SSSSNFWR V DT P QLETPWK L C+P GISKNS G IVRLQ P T Subject 2554 QPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH*PSPCAPRANLKLLMRSLNL*KLWQEKQEHRSEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMKIKSSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPPT 3225
Range 3: 3265 to 3336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 20/24(83%) | 0/24(0%) | Minus/Minus |
Query 712 PSVLRRKPTECQKQSPSPGTGKVL 783 PSVL +KPTECQKQ PSPGT KVL Subject 3265 PSVLSKKPTECQKQLPSPGTEKVL 3336
Range 4: 2555 to 2896 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 58/114(51%) | 0/114(0%) | Minus/Minus |
Query 2 EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN 343 +++ +ILE +KV+ R+ R V* K AI+ N FL+ M+AHLPH ++KL MI LNGHL ++ IIIF LA + QR+ P + IGN ME +ALH PRH ++L NCQAAM++ N Subject 2555 QVIDEILEFMKVVARETRA*V*GKTRAIHRNRFLNSMKAHLPHTSVKLFMIELNGHLWIYEDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITPN 2896
Range 5: 2972 to 3334 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 59/121(49%) | 0/121(0%) | Minus/Minus |
Query 419 VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL 781 + A+ K N +PKA+ ITRHR+SV++ N IS CLN AA L GK*A VN A GS+W VRYYK+ T +L N ++PF+NFK QDFWT++ F G FK+++ L A H NL Subject 2972 ISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFYG*GTFKNQN*LLFAPRHF*NL 3334
Range 6: 3018 to 3332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 55/105(52%) | 0/105(0%) | Minus/Minus |
Query 465 RC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQ 779 +C* ++Q +AKS+ HHQAQ KC*+ Q+ NQ MPQSGS RKMS+ CE C WI*L PC +LQ+ N S * +PL*KLQ P LD + FL G LQ Subject 3018 QC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQ 3332
Range 7: 2556 to 2882 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 53/109(49%) | 0/109(0%) | Minus/Minus |
Query 3 DP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ 329 DP* ES K++K+ GL *+ CH K IS* H GP AT QA HD AQWA *+ +HHL FG S + + NWK HG +C A P A ++T QLSGCN + Q Subject 2556 DP*IYESCGKRNKSIGLR*NSCHS*K*IS*FHEGPSATYFGQAFHD*AQWAPVDL*RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQ 2882
Range 8: 2973 to 3329 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 57/119(48%) | 0/119(0%) | Plus/Plus |
Query 420 KFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA 776 +F C A++++ LK P+ *K VQKSW LKF KG L+R + V L* T Q DP A * FT +AHFP AARLRH LI L TL LCLVM AFG L F+ A Subject 2973 RF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLA 3329
Range 9: 2569 to 2919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 52/117(44%) | 0/117(0%) | Plus/Plus |
Query 16 LQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPR 366 LQPDN V +A G+A QL PW FQL + D+ PK+ R** + + AH*A+S*+A* ++VA+GP W+ EI+F WH+ Y+RP+ L L LS +QGS + ++ R R Subject 2569 LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR**FDLHKSTGAH*AQS*KA*PKYVADGPSWN*EIYFYEWHEFYLRPMLLFLLPQLS*IQGSHQ*LEIGPRSTR 2919
Range 10: 2568 to 2855 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 48/96(50%) | 0/96(0%) | Plus/Plus |
Query 15 IAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFL 302 IAA*QL S +CLG C A SM FPI G * AK+ KMMI +CPLS IM+SL CG+WA M RN F MA+ L QT+ L L Subject 2568 IAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMMI*SS*IHRCPLSSIMKSLTEVCGRWAFMELRNLFL*MARVLPQTYALVSL 2855
Range 11: 2986 to 3279 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 43/98(44%) | 0/98(0%) | Plus/Plus |
Query 433 AKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC 726 A +Q+ ++ *R P RN L SK+ G+ *SF RG +*+D F+ CN +QG + IH Q + SQ MLIFR++ + LPD*G+ * * HF C Subject 2986 ASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLC 3279
Range 1: 3086 to 3256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 27/57(47%) | 0/57(0%) | Plus/Plus |
Query 611 KLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD 781 +LR H C S E L GC + S F ++F+ F VPGDG+CFWHSVG L+ D Subject 3086 QLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVD 3256
Asian prunus virus 3 isolate Nanjing, complete genome
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Nucleotide Sequence (1021 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
529.4 | 1819.8 | 39% | 2.143e-149 | 43% | NC_001948 | |
174.3 | 397.9 | 18% | 1.677e-70 | 49% | NC_028868 | |
171.1 | 417.6 | 19% | 1.47e-72 | 46% | NC_009892 | |
170.6 | 420.0 | 11% | 6.504e-71 | 43% | NC_009991 | |
168.3 | 415.7 | 25% | 3.156e-70 | 42% | NC_028111 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 488 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
529.4 bits(1149) | 0.0 | 216/253(85%) | 0/253(0%) | Plus/Plus |
Query 117 DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R 875 DKS+ VVS+KGIGDS++L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+I+ Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSGSLLMPNI KL I FF R Subject 488 DKSSQVVSRKGIGDSNTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSGSLLMPNISKLVISFFCR 1246
Range 2: 514 to 1242 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
407.5 bits(883) | 0.0 | 185/243(76%) | 0/243(0%) | Minus/Minus |
Query 143 QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF 871 QK M + M GIS+EPLLPQ +TSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKHRM E +RL IGVKL+K NFE ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS W ILYW*AQG +LSGEPT SGGITAVA+SMLGL TS+K++RS IDQ**ISS RKRFLAPVEITRGTN S ESP+PF Subject 514 QKNDMTNLEMLGISKEPLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMSTE*REPSGRTTDLALSRYLHDKGCEYISFQLPSGAKSSWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF 1242
Range 3: 459 to 1217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 116/253(46%) | 0/253(0%) | Minus/Minus |
Query 88 ECLALAESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH 846 +C A A+SH HNL V++NP+* SP V * PRQ PY A * FSNKDI * QHHD S+ A R LE DL C ++++N C K +DY G*+ S IL+ +P SV+H+ QI *A +T VV+T H+S H +RA G FYTG+PKG ESQ L L AC A P * D TS+E HH EKDS HL + H GPIS NHQ P *Q H*+L + QTH Subject 459 KCWA*AKSHSSHNLLLVRKNPR*TLSPSLWVFL*VVEALPRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE*CQPSSVSHRAELQIWP*AGICMTKVVSTSHSSCHLVRRAVGCH*FYTGRPKG*DSLESQPALLEGLLQLPRACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPISGVC*NHQCPFY*QPDLICH*NL*RTQTH 1217
Range 4: 470 to 835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 54/122(44%) | 0/122(0%) | Minus/Minus |
Query 99 SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK 464 S +Q+ *Q L*+H PV I +E L + ILV PRV RAN+ F Y C++H + Q+ D+I PV+N IM+KKIP TC ++T DQ E VRITN+L DN+ +TR Y++ Subject 470 SGLEQVSA*QRL*VHLIPVAIWCEEQLVAIDFILVGPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQSPECVRITNALSTDNLT*FVTRTYNE 835
Range 5: 881 to 1222 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 53/114(46%) | 0/114(0%) | Minus/Minus |
Query 510 LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M 851 L NV H QRAT T Y * KIL++ LP F +L++ LGR LI L E SQIKIY S NIMM+ +A +H A *R +IF A ++ +T +V + KI GE + V+ +F*+ Subject 881 LRNVGHKQRATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*V 1222
Range 6: 505 to 918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 64/138(46%) | 0/138(0%) | Plus/Plus |
Query 134 CQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHP 547 CQ +G+W*F* EIGP+C+ +RC+ESFS **+SLLV S G A+HA N N + WLS + PLGLPV*N +P AL + W L *+V TT V + A IC W TL G KI L HP Subject 505 CQ*KGHW*F*HTPEIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHALGNCSNPSRSAGWLSRES*PLGLPV*NQWQPTALRTRWQLE*DVLTTFVMQIPAQGQICSSARWLTLLG*HHSLKI*SPLA*FHP 918
Range 7: 1006 to 1242 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 39/79(49%) | 0/79(0%) | Plus/Plus |
Query 635 YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASHPLLL 871 +A LL S*CC *+ISLFEN Q+A *G+CRG+ ++ +R+T+ +GD ++ GF T +KLW++WL A A+H H +LL Subject 1006 HAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEWLFAYAQHF*VGHIILL 1242
Range 8: 738 to 1223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 70/162(43%) | 0/162(0%) | Plus/Plus |
Query 367 IEFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS 852 I+ + CS +M TG++C HN C C + DL M HA R S QN T SP +IF* T V A KI +L* A C A + IMML L+YIFI*E S+S IR+LPR++ + N GR + RI H *+V VALC C TF S Subject 738 IKSMATNCSSHQMATGMRCTHNLCHADTCSRPDL*FCPMAHATRLTSFTQNLVTTCLVSPLWVIF*LQTCDVFLASMQ*A*KILNL*AAACTVASQYIMML*LRYIFI*ELSRSQIRSLPRQSFDNS*KNPQGGR*SLSRIFPH***IVGGVALCLCPTFLS 1223
Range 9: 504 to 671 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 29/56(52%) | 0/56(0%) | Plus/Plus |
Query 133 LSARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQ 300 LS R LVILT S +WS V* QV GIFF MM+F TG I S W C Q Subject 504 LSVERALVILTHSGDWSHV*FPQVPGIFFCMMRFTTGQLVI*SIFWTLPSQACSWQ 671
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 497 to 925 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 70/143(49%) | 0/143(0%) | Plus/Plus |
Query 126 NHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPIN 554 +++ SKK + + +LK+LVP V + RN FLHDE+HYWS +DL+ FL+ V P+ L+AT V PPEIL G+ ESLNPW Y + ++ F PDG E Y+QPLSS Y+LKA +V G Y+VD+++S F HH++S T N Subject 497 DNLCSKKSLSECGTLKELVPLVKMSKKRNFFLHDELHYWSPQDLMLFLDSVNPDHLVATVVFPPEILAGAKESLNPWCYSFHRQGSKLTFFPDGVQSESYTQPLSSGYILKASKIVCPSGQIYSVDLVYSAFAHHVVSITKGN 925
Range 2: 944 to 1222 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 49/93(53%) | 0/93(0%) | Plus/Plus |
Query 576 RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL 854 R FS F+A G+K L LS + C PV D+++KIY Y+RTLKKPD +S AKL Q++ PTG EIKF EDF+ LV+ SLLMP+ KL Subject 944 RFFSNFEATGVKHLSGLSHSVRDCIPVSTDLISKIYRYIRTLKKPDLQSCMAKLSQIVPNPTGVEIKFTEDFSRLVMEIQPLKSLLMPDTAKL 1222
Range 3: 946 to 1173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 37/76(49%) | 0/76(0%) | Minus/Minus |
Query 578 MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKH 805 MTS KSS+NLIS PVGL + A D SGFLRVL IL S TG Q R R P+ASK EK+ Subject 946 MTSREKSSVNLISTPVGLGTIWLSLAMQDCKSGFLRVLIYL*ILDIRSVLTGMQSLTEWERPDRCFTPVASKFEKN 1173
Range 4: 547 to 723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 29/59(49%) | 0/59(0%) | Minus/Minus |
Query 176 GFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTN 352 GF+LS P ISGG T VA GLT S+ +RS Q** SS +K+FL + +T GT+ Subject 547 GFRLSLAPANISGGKTTVATK*SGLTESKNSIRSCGLQ**SSSCKKKFLFLLILTSGTS 723
Range 1: 521 to 925 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 69/135(51%) | 0/135(0%) | Plus/Plus |
Query 141 KKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 545 K G + S+K L+P+ +S +R FLHDEIHYWS LI FL V+P M+LAT V PPEIL G+ ESLNPW Y+++I+ +++APDG E Y QPLS YLLK + L DGS Y++D++ S F HHL+ T Subject 521 KVGFENDPSIKDLLPQCVSDSSRRFFLHDEIHYWSKEALINFLVSVQPEMILATVVYPPEILAGAKESLNPWCYKFQINGDDLIYAPDGCMQEAYIQPLSGCYLLKTSGIELPDGSFYSLDLVKSTFSHHLICIT 925
Range 2: 935 to 1246 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 50/104(48%) | 0/104(0%) | Plus/Plus |
Query 558 LLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF 869 L+ +R FSGF+A K + PL R + SCFP+H +++ +IY YLRTLKKPD +S+ AKL Q++ PTG EIKF E+F+ L+++C + L+PN+ KL FF Subject 935 LINQKMRPFSGFEATSSKGISPLMRKVGSCFPIHPNLILRIYRYLRTLKKPDLQSSMAKLSQVLPNPTGPEIKFFEEFSKLLLNCETVNTKLLPNVWKLISNFF 1246
Range 3: 958 to 1245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 44/96(46%) | 0/96(0%) | Minus/Minus |
Query 581 KKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEK 868 KK SF FG S + QL + SS NLIS PVG +* +FA D SGF VLK*RYIL C GKQ R++G +ASKP K Subject 958 KKLDMSFQTFGRSFVFTVSQLSNNFENSSKNLISGPVGFGRT*LSFAMDDWRSGFFSVLK*RYILRIKFGCIGKQEPTLRIKGEIPFEEVASKPLK 1245
Range 4: 526 to 732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 32/69(46%) | 0/69(0%) | Minus/Minus |
Query 146 GFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIP 352 GFKLS P +ISGG T VAR + G T +RK +R+ + Q**ISS RK+ L E G+ E P Subject 526 GFKLSLAPAKISGG*TTVARIISG*TETRKFIRASLLQ**ISS*RKKRLEESETH*GSRSFIEGSFSNP 732
Range 1: 529 to 918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.6 bits(366) | 0.0 | 69/130(53%) | 0/130(0%) | Plus/Plus |
Query 156 DSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 545 D +LK LVP ++ A++LF+HDEIHYWS RDLITFLEV++P ++ AT V PPE+LVGS SL W Y++ + F PDG E Y QPL + YLLKA+ ++L DG Y VDV+ SKF HHL++ T Subject 529 DGVTLKDLVPELMRKSAKHLFMHDEIHYWSARDLITFLEVIQPEVMYATMVYPPELLVGSKFSLFKWCYEFDVIGNDFFFYPDGVRTEGYLQPLKNGYLLKAKRILLPDGGVYHVDVVQSKFAHHLIAIT 918
Range 2: 940 to 1212 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 50/91(55%) | 0/91(0%) | Plus/Plus |
Query 570 NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPN 842 N+R F FDA + LEPL+ + CFPV +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS S+L P+ Subject 940 NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIISTNTIKSILCPS 1212
Range 3: 963 to 1175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 32/71(45%) | 0/71(0%) | Minus/Minus |
Query 593 MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMAS 805 M ++AKS NLIS P G I+ + A AD SGF V + RY L TTS TGKQ + GS +AS Subject 963 MINDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS 1175
Range 4: 528 to 719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 31/64(48%) | 0/64(0%) | Minus/Minus |
Query 155 KLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESES 346 +L+ +PT SGG T VA G TSR VMRSR Q* ISS R LA ++ GT LS + S Subject 528 RLNLDPTNNSGGYTMVAYMTSG*ITSRNVMRSRALQ*CISSCINRCLADFLMSSGTRSLSVTPS 719
Nerine latent virus isolate Marijiniup 4, complete genome
Range 1: 579 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 67/123(54%) | 0/123(0%) | Plus/Plus |
Query 177 LVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 545 + PR +R LF HDEIHYWS +DLI LE RP +LAT V PPEIL GS ESLN W Y+Y+I G++ + PDG E Y+QPL S +LLK + + L DG Y VD++HSKF HHL+S T Subject 579 MFPRNFQGKSRKLFFHDEIHYWSRKDLIYMLEQFRPECILATLVCPPEILAGSKESLNKWCYEYKIDGGKLHYYPDGVHSEGYTQPLDSSFLLKTKKIQLDDGETYCVDLIHSKFSHHLISIT 947
Range 2: 960 to 1253 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 50/98(51%) | 0/98(0%) | Plus/Plus |
Query 561 LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL 854 + ++R F FDA+ L+PL R + FP+ +V++KIY YLRTL+KPD +SA AKL QL+ PTG EIKFIE+FA LVI G+ S+LMP++ K+ Subject 960 ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGKMRSILMPDLLKI 1253
Range 3: 974 to 1273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 45/100(45%) | 0/100(0%) | Minus/Minus |
Query 575 LQKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHR 874 L + F G+S E +LP +T A SSMNLIS PVG + S* N A AD SGF RVL+ IL+ T GK I RG R ASK K R Subject 974 LYMSALKIFKRSGMSIERILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGKA*PIFLPRGLRCPADTASKLPKVR 1273
Range 4: 611 to 934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 45/108(42%) | 0/108(0%) | Minus/Minus |
Query 209 K*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRF 532 K*W+N E ST * PS LS+ L G S PSG +P ILY * FK S +P +ISGG T VA G S ++S +DQ* ISS +K F Subject 611 K*WENLECMRSTQ*VSPSSN*IFFVLSRKELSKGWV*PSE*TPSG**CSFPPSILYS*HHLFKDSLDPAKISGGQTRVASIHSGRNCSSI*IKSFLDQ*CISS*KKSF 934
Nucleotide Sequence (598 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
176.1 | 311.4 | 22% | 2.46e-43 | 50% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1586 to 2080 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 82/165(50%) | 0/165(0%) | Plus/Plus |
Query 27 SLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSGSSLSEDC 521 SLIP S DP+FRPSS E++ ALSE+K A GQS LFRFL+DD + E+++SY+ L KH+KALT F+ CGLQWFLL+QR NLKFLK SSF +L C V K+Y+ V QA+ P+A L KV+V S + S +S +EL A + S DC Subject 1586 SLIPFSDDPTFRPSSTEVNLALSEVKAALEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDC 2080
Range 2: 1573 to 1965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 65/131(50%) | 0/131(0%) | Minus/Minus |
Query 14 TYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC 406 T TL K ASG AC +T *+ T Q S K+D+ F+N +L LCLRRNH RPQ+ K VRAF CL L E +S SS +NL FDCP A L SD A S EDGLK GS +NGI+D+ C Subject 1573 TKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASSAALTSDSARLTSVEDGLKVGSSENGIKDKITC 1965
Nucleotide Sequence (229 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
143.1 | 696.9 | 41% | 4.229e-34 | 66% | NC_001948 | |
48.7 | 72.7 | 23% | 2.091e-07 | 45% | NC_009892 | |
36.8 | 72.2 | 19% | 2.85e-07 | 37% | NC_028111 | |
45.5 | 71.8 | 23% | 3.86e-07 | 45% | NC_014821 | |
38.6 | 68.6 | 32% | 3.328e-06 | 32% | NC_002729 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7130 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 55/76(72%) | 0/76(0%) | Plus/Plus |
Query 1 ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR 228 +TF+VVTLLKSRDPTP+D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID WLGHW AAF ++VK + R Subject 7130 STFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFR 7357
Range 2: 7152 to 7358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 56/69(81%) | 0/69(0%) | Plus/Plus |
Query 23 Y*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG 229 +*NQ I+P I TG TLL QD RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG Subject 7152 F*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG 7358
Range 3: 7136 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 52/74(70%) | 0/74(0%) | Minus/Minus |
Query 7 PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK 228 PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ ++K Subject 7136 PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVK 7357
Range 4: 7132 to 7356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 52/75(69%) | 0/75(0%) | Minus/Minus |
Query 3 LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV 227 L+ +LT NAA +QCPSQ SM F PNSQ AEKA +CM+INF LCLVAAM*NQCLSSGVGSLDF +VTT V Subject 7132 LNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKV 7356
Range 5: 7156 to 7344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 45/63(71%) | 0/63(0%) | Plus/Plus |
Query 27 EIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQI 215 EIK S+PR *ALVLHCC KT EID+HAV+CLFS+LRIG K H*+LAWAL CCI * SQI Subject 7156 EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQI 7344
Range 6: 7155 to 7358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 45/68(66%) | 0/68(0%) | Minus/Minus |
Query 26 P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS 229 P*+ I*L +MQH+ NAQAN QW F PIRRLLKRH TA* SIS VL QQC+TSAY G D LIS Subject 7155 P*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7358
Nerine latent virus isolate Marijiniup 4, complete genome
Nucleotide Sequence (1262 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
695.3 | 3479.6 | 30% | 0 | 52% | NC_001948 | |
139.4 | 455.0 | 28% | 7.381e-64 | 31% | NC_025388 | |
138.5 | 447.7 | 24% | 9.658e-63 | 31% | NC_028975 | |
134.9 | 448.7 | 30% | 1.994e-61 | 31% | NC_028868 | |
132.1 | 478.4 | 27% | 1.594e-68 | 29% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7516 to 8520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
695.3 bits(1511) | 0.0 | 301/335(90%) | 0/335(0%) | Plus/Plus |
Query 257 YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN 1261 YMY LFGILVLVG IA ILAHVDS++G++ GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS EEIDYHC* MAS G+LPGESNEAFEARLKSLELARAQKQPEGSN PP L GILAKRKR+IENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI+E QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGG+KRAPTKAEMVANIASFEV+VLRQ MAEGKRSSNLGEISGGTAGALIN Subject 7516 YMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQVLRQAMAEGKRSSNLGEISGGTAGALIN 8520
Range 2: 7261 to 7458 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 38/66(58%) | 0/66(0%) | Plus/Plus |
Query 2 LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF 199 LRIG K H*+LAWAL CCI * SQI QGTT IN GVTGT K * VV ++ S ALG+ Subject 7261 LRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGY 7458
Range 3: 7533 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
565.1 bits(1227) | 0.0 | 264/329(80%) | 0/329(0%) | Minus/Minus |
Query 274 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 1260 L+ APAVPPLISPRLELR PSAI CLST TSKEAILATISA VGALL PPF SSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPAISDLFRSQ GL PI+VDL ELPTSEQ RAIS+AT N + S MPDSPNARI+SSIAPSS+T G+ TT SCF TS MSTVFE AFS+ L LARMP R GG LEPSGCF*ALA+S DFS ASKASFDSPG+ P LAI *Q**SISS LTPKAFKPPSTS TV+A ASLGPQFSI IDSPVALM+QP PLLLST ARI +AI PT+TRIP Subject 7533 LMSAPAVPPLISPRLELRLPSAIACLST*TSKEAILATISAFVGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIP 8519
Range 4: 7260 to 7481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 44/74(59%) | 0/74(0%) | Minus/Minus |
Query 1 HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR 222 HKILRL + PRA E L TT+ Y F VPVTP++ +LM VVP*+ I*L +MQH+ NAQAN QW F PIRR Subject 7260 HKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRR 7481
Range 5: 7998 to 8519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 114/174(66%) | 0/174(0%) | Plus/Plus |
Query 739 CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ 1260 C+G*RCNR DS I *+WH R++* RY T LL*CW*L ++N DW+ES+L*P+ + N W+ KG D+ ILHVLCKNRVE+PSGDGD+T *LGQE I**+*KVCSL* SHR*E A*+KGW *+SSN+S*DG *Y LF*G AQT+YG*R+AE Q WRD*W N WC++Q Subject 7998 CHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNES*DGC*YRLF*GSSAQTSYG*RQAEFQPWRD*WWNGWCTHQ 8519
Range 6: 7260 to 7544 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 87/95(92%) | 0/95(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSG 285 PANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSG+FGQSENFVPL++VI L A I+VLSVWNSG Subject 7260 PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG 7544
Range 7: 7590 to 7976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 69/129(53%) | 0/129(0%) | Plus/Plus |
Query 331 QQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEAR 717 QQ*W L H G+ VN +*+L PK*G C + G A RFEGFRG*P *RN*LSLL L G+ + R*+K* F* +I G SSKAA RF* T+ S WHSC +E + +C+FK+ GH GG E R Subject 7590 QQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFETR 7976
Range 8: 7261 to 8520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
543.1 bits(1179) | 0.0 | 247/420(59%) | 0/420(0%) | Minus/Minus |
Query 2 IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ 1261 +D+ TS S TNLSK+G PL+FSHSLSEHL+LKRG+IS+HLSF WSS N+TL FKR LICDS+E++KGCKLFI IKS LGP+S W PRLQMD+PHDFCIVHAKS H PY S F + VT+ TL+NQG* L ATNIRA+ C IY ++KL A YAR T+C+NQL+YCTFIH+I H+R V Q+LPHVH *K I +PL F KNAT++R +RTFRLLLSS LQRF G KS I* T + H LTMIINFF + ANP*SLQTS H L+ K LTWA + N *L P E T++V AV M KD N ++Y++QNSKQ +H+ L L Q L+AQNSQ + +QS G DH+ L F RPCNA ID CCPL+ +LT NAA +QCPSQ SM F PNSQ Subject 7261 VDECTSRSTTNLSKVGTPLAFSHSLSEHLNLKRGDISNHLSFRWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATESRWCIRTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQ 8520
Range 9: 7262 to 8476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
446.9 bits(969) | 0.0 | 234/405(58%) | 0/405(0%) | Plus/Plus |
Query 3 CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAP 1217 CELG+N++ ID WLGHW AAF ++VK + RGQH SI + ALQGR++K+N+LWS+ ++P+LW +*EFCA N C+ N +H C +CLEFW * L L SL M TA++ T V S G SQ+*L+ AQVR L R+C EV*RL*GLA+L+KKLIIIVK+ W+ V+QM+LL+P *N WS ELKSS KVL + L VAFL RG +M FQ+ WT GR *+T + M WMKVQ* S*F H V+LA +A +L *I H ALMLVA + QP*L RV VT* K L *G+* DFACTMQKSCG SIWRRG+H L GPR+DLM+MKSLQPL S ESQMR RL QRV L+ELQ KLRW LI PLLR +CSDKLWLK SG P Subject 7262 CELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVLMHHLLSVAFLPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQRKLRWLLISPLLRFKCSDKLWLKASGVP 8476
Range 10: 8027 to 8509 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 102/161(63%) | 0/161(0%) | Minus/Minus |
Query 768 HQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLES 1250 HQ F H*SLQ W+SA LQP* V*A PQKR+Y*+PSQL LEL * HPL+QA SHL*L ++QRLQTFH H*I SWP+* V SPSPDG STRFLHSTCKI S PL Q F GH+ DS QS L SYQHQS+ V YL R +CQ H+M ES Subject 8027 HQPFHH*SLQGWNSACLQP*LV*ALEPQKRRY*QPSQLSLELF*FHPLVQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES 8509
Range 11: 7262 to 7663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 89/134(66%) | 0/134(0%) | Minus/Minus |
Query 3 GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA 404 G + Q LT P * N HYCC H QG G QLQ L PEFQTD+T M A+ +T IKGTKFSD P PELG DC GPQ V+L VPSL*RPP GN* MLSPE G+FDFLRKCST PMPKP VNGV+V AQFA Subject 7262 GRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFA 7663
Range 12: 7724 to 7975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 44/84(52%) | 0/84(0%) | Minus/Minus |
Query 465 RASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG* 716 R S PP+CP LK H * S QECH E V *NL AAFEL P I QK HL H P++ FNNDNQFL Q+G* Subject 7724 RVSKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG* 7975
Range 1: 8207 to 8548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 60/114(53%) | 0/114(0%) | Plus/Plus |
Query 908 RSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 1249 R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +ALE + G+ R P E+VA A+ V + R A+ K +S E++GG AG Subject 8207 RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRAEAAQDKNASTAHEVTGGRAG 8548
Range 2: 6875 to 7126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 39/84(46%) | 0/84(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA 252 P + + + P+ +GLG+G+V+ L +S LP GDN+H PHGG Y DGTK I+YCGP+ SFPSS LF I+V+++ A Subject 6875 PPDNTRVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLPHGGNYLDGTKRISYCGPRDSFPSSNLFKGGTFSAICIVVLLVFA 7126
Range 3: 7146 to 7259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 14/38(37%) | 0/38(0%) | Plus/Plus |
Query 287 LVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENC 400 L+G +A +++ + N ++ GCLI TGES++++NC Subject 7146 LIGLTVALVVVGLLHMLNSNHDGCLIVITGESVVVKNC 7259
Range 4: 8027 to 8191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 17/55(31%) | 0/55(0%) | Plus/Plus |
Query 731 SPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPF 895 SP+V I+ + +G+ D DIAR+C+D GSS+ + +G S + Subject 8027 SPDVATAENIEYIRADLVRAGVPTKDITFAMWDIARYCADAGSSESTEFVGTSSY 8191
Range 5: 8206 to 8559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 53/118(45%) | 0/118(0%) | Minus/Minus |
Query 907 LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDL 1260 L R PA+PP+ S +E A L +T A AT S+ G L +P S A T KKSKAANF FSL PF GG+ V+ +F TI A* QNL VV LI AIS L Subject 8206 LERGPALPPVTSWAVEAFLSWAASALCKITPLLA*AATNSS**GFLTSPFSGSKAALFETCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLITAAISIL 8559
Range 6: 6901 to 7062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 26/54(48%) | 0/54(0%) | Minus/Minus |
Query 27 LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG 188 LG LGPQ ++L VPS * PP G C LSP G+ D ++ T P PKP G Subject 6901 LGKLSLGPQ*LILFVPSK*FPP*GRLCTLSPTEGRVDLVKHQMTMPTPKPTAMG 7062
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 8222 to 8569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 59/116(51%) | 0/116(0%) | Plus/Plus |
Query 902 LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 1249 + R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +ALE + G+ R P E+VA A+ V + R A+ K +S E++GG AG Subject 8222 VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRTESAQDKNASTAHEVTGGRAG 8569
Range 2: 6875 to 7126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 40/84(48%) | 0/84(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA 252 P + K + P+ +GLG+G+V+ L +S LP GDN+H PHGG Y DGTK I YCGP+ SFPSS LF I+V+++ A Subject 6875 PPDNTKVLLPIAVGLGVGVVIWCLTRSTLPSVGDNVHSLPHGGNYMDGTKRINYCGPRDSFPSSNLFKGGTFSAICIVVLLVFA 7126
Range 3: 8048 to 8212 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 18/55(33%) | 0/55(0%) | Plus/Plus |
Query 731 SPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPF 895 SP+V I+ + +G+ + D DIAR+C+D GSS+ + IG S + Subject 8048 SPDVATAENIEYIRADLVRAGVPKKDLTFAMWDIARYCADAGSSESTEFIGTSSY 8212
Range 4: 7146 to 7292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 15/49(31%) | 0/49(0%) | Plus/Plus |
Query 287 LVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK 433 L+G +A + + + GCLI TGES++++NC + VK Subject 7146 LIGLTVALAVAGLLHILSSAQEGCLIVITGESVVVKNCVYTNEFIGLVK 7292
Range 5: 8227 to 8568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 51/114(45%) | 0/114(0%) | Minus/Minus |
Query 907 PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDL 1248 PA PP+ S +E A +T A AT S+ G L +P S A T KKSKAANF FSL P GGI V+ +FHTI A* QNLR VV L+ AIS L Subject 8227 PARPPVTSCAVEAFLS*ADSVRCRITPLLACAATNSS*YGFLTSPFSGSKAALLDTCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLMTAAISIL 8568
Range 6: 6901 to 7062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Minus |
Query 27 LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG 188 LG LGPQ + VPS+* PP G C LSP G+ D ++ T P PKP G Subject 6901 LGKLSLGPQ*FIRFVPSM*FPPWGRLCTLSPTEGRVDLVKHQITTPTPKPTAMG 7062
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 8162 to 8509 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 55/116(47%) | 0/116(0%) | Plus/Plus |
Query 902 LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 1249 + R EIA +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF V++ +ALE + G+ R P E+VA+ + + + R A+ K S E++GG AG Subject 8162 VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAALEPENGLVREPNHEELVASQVNKGISLHRTEAAQDKNVSTAHEVTGGRAG 8509
Range 2: 6840 to 7091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 41/84(49%) | 0/84(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA 252 P + + + P+ IGLG+G+V+ L +S LP GDNIH PHGG Y DGTK I+YCGPK SFPSS LF ++V+++ A Subject 6840 PPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISYCGPKNSFPSSNLFKGGAFSAICVVVLLVFA 7091
Range 3: 7111 to 7257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 16/49(33%) | 0/49(0%) | Plus/Plus |
Query 287 LVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK 433 L+G A + + + N GCLI +GES++I+NC + + VK Subject 7111 LIGLIAALVAVVLLHMLNSGQEGCLIIISGESVVIKNCVYTSEFINLVK 7257
Range 4: 7988 to 8152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 17/55(31%) | 0/55(0%) | Plus/Plus |
Query 731 SPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPF 895 SP++ I+ + +G+ E DIAR+C+D GSS + IG S + Subject 7988 SPDISTAEEIEHIRSDLVRAGVPESTLTFSMWDIARYCADAGSSASTEFIGTSSY 8152
Range 5: 8167 to 8412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 38/82(46%) | 0/82(0%) | Minus/Minus |
Query 907 ATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDL 1152 AT S+ +G+ +P SSA T KKS A NF F L PF GG+ V +F TIFA* Q RVV LI AIS L Subject 8167 ATNSSWLGSRTSPFSGSSAALFETCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLITEAISIL 8412
Range 6: 6866 to 7027 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Minus |
Query 27 LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG 188 LG GPQ ++L VPS * PPCG +LSP G D +R T P P+P+ G Subject 6866 LGKLFFGPQ*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIG 7027
Range 1: 8549 to 8854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 53/102(52%) | 0/102(0%) | Plus/Plus |
Query 944 TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 1249 TLR+FC YYAK+VWN+ LET PPA W+ KG+ + K+AAFDFF GV +ALE G+ R PT +E VAN E R +G +S+N+GEI+GG AG Subject 8549 TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAALEPVDGIIRKPTNSERVANETMKEAMSFRAAARDGTQSTNIGEITGGKAG 8854
Range 2: 7178 to 7381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 38/68(56%) | 0/68(0%) | Plus/Plus |
Query 1 PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFG 204 P +++K++ PL IGL +G+V+ L +S LP++GDNIH PHGG Y DGTK I YCGPK+SFP+ G+ G Subject 7178 PPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG 7381
Range 3: 8261 to 8533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 31/91(34%) | 0/91(0%) | Plus/Plus |
Query 662 VIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR 934 V+ + +SK + +R++ + + +V E I ++ F + G+S V + IARHC+DVGSS +S LIG P D+ E+A II+ Subject 8261 VVGSGMSKRLSIRDLAAIDYKPQAGSVASEEKISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK 8533
Range 4: 7446 to 7601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 15/52(29%) | 0/52(0%) | Plus/Plus |
Query 278 ILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK 433 +++ V AA+ LI+ ++ C I TGES+ + NC S +K Subject 7446 VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLSPEFLEVLK 7601
Range 5: 8518 to 8853 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 50/112(45%) | 0/112(0%) | Minus/Minus |
Query 913 PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAIS 1248 PA+PP+ISP L L PS L + S AT+S LVG L+ P S A TP KKSKAA SL P L Q+AGG+ VS F TI A* QN R+V ++++ ++ Subject 8518 PALPPVISPMLVL*VPSLAAALKDIASFIVSFATLSELVGFLMIPSTGSRAAELSTP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLLMIVA 8853
Range 6: 7204 to 7380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 25/59(42%) | 0/59(0%) | Minus/Minus |
Query 27 PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG 203 PK+P +G GPQ ++ LVPS * PP G * MLSP G ++ T P +P+ G Subject 7204 PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKG 7380
Nucleotide Sequence (1029 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
756.7 | 2344.6 | 43% | 0 | 38% | NC_001948 | |
264.5 | 364.7 | 28% | 1.148e-69 | 34% | NC_018714 | |
195.3 | 388.9 | 34% | 2.304e-53 | 34% | NC_009892 | |
200.8 | 379.1 | 30% | 1.172e-66 | 38% | NC_014821 | |
196.3 | 361.2 | 34% | 2.009e-65 | 38% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3332 to 4357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
756.7 bits(1645) | 0.0 | 312/342(91%) | 0/342(0%) | Plus/Plus |
Query 2 DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG 1027 DGLALKAGIRSFVESE V LS+P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAG Subject 3332 DGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAG 4357
Range 2: 3331 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
535.3 bits(1162) | 0.0 | 267/342(78%) | 0/342(0%) | Minus/Minus |
Query 1 PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS 1026 PAF P TFLRKTSKVTTS PSFFDLPA TL SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPV+PPSKHP +FSA SKLGK VI DPF E +SRADRLTFR+SSTFML*GPLPIFSTCLMCS VMSN A++ P GLITSISP SHLAQMSKASKASAKYI+ RPPP* SSSK+*LVLGLH+* +TSTSRLPSA+AMAVIMQP GA G K*FD + +IPHRGHS SPNFQLTSYSGV+ I LTWC QN AIISFSA*AFS +C + G ER+ T SLST D IPAF+A PS Subject 3331 PAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPS 4356
Range 3: 3362 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
304.4 bits(658) | 0.0 | 143/298(48%) | 0/298(0%) | Minus/Minus |
Query 32 IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHER 925 IHF + FD*I *S +K Y+F+ R HE LV ETL SPKCTKH+ Q P N+ S +T KPR I + LITY+AS Q L+ F PLK W++ Y P+ K+++ S + Q IH YALR +T +MP V I YVKQ R IN+FN +I ITF +V+ LKSF IHH++ P LT L K++I A T +I H+ TPSKC* NGC HA I+ G L++I* + +NST* PL FP+ P + IFWC + ++VPNAE* +H I ISI +L W K T HER Subject 3362 IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHER 4255
Range 4: 3346 to 4239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.0 bits(548) | 0.0 | 136/298(46%) | 0/298(0%) | Plus/Plus |
Query 16 EGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK 909 +GR + RG+* SF P++ +CLCR+*+D +IL AP + +TRI* LE+ G+*VA MWN + +KS T+ P+ WLHD+SHC STWKA* +L +* +H S+ * A+S G +DVF SF*G HL M* +WR+*S *S + C V*HN * H AC ++ * S+HK G* A+ I F+E V +N+ K * G K + + A +WR K**E+ K LA W + +*+* KG+D AWYIWGW+EF +QE HE++* I N+C + S+FNQK Subject 3346 KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK 4239
Range 5: 4285 to 4356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 12/24(50%) | 0/24(0%) | Plus/Plus |
Query 955 IKEGGLGCRYL*SLP*ESYRPKGW 1026 +KEG +GC * P*+S R +GW Subject 4285 VKEGRVGCSNF*GFP*KSCRIEGW 4356
Range 6: 3504 to 4256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 118/251(47%) | 0/251(0%) | Minus/Minus |
Query 174 HPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILV 926 HPF F*LN L+ +Q L+I+ Q S*+SC NS QPQMYQA+ S P * Q +Q+AK L+ * SHHL RQ A+ F P+Q+L + L T S K I * A HP LC E Y +HA C H LCQT Q D* LQ H +HI +C++PQKL NTS P D A Q+ D C Y N HAFQVL QWL SC+H G V +DL +FHI ATH P+ S+ HILV Subject 3504 HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV 4256
Range 7: 3348 to 3482 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 17/45(38%) | 0/45(0%) | Minus/Minus |
Query 18 GA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLP 152 GA RI +S H HKH + LG K+L+ H PR + P Subject 3348 GAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRP 3482
Range 8: 3504 to 4190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.2 bits(424) | 0.0 | 112/229(49%) | 0/229(0%) | Plus/Plus |
Query 174 HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN 860 HQNM+ G+ GK+SG YVEF +QI N P M A* QPL QHLEGV+ C I V A I L+S+V+ G *CI KLLR T NV+ M +LK LI+ +L CLT* M+T GM ++ V L+A*+WM+C + +D F * G +* Q L G K+ + C *LA *VMR+ +Q+LG LV LL L++G+* CLVHLGL RVS TR S*+ L+ N Subject 3504 HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN 4190
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3430 to 4299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 117/290(40%) | 0/290(0%) | Plus/Plus |
Query 47 ESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 916 + + + P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L G TGV+ K A + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3430 DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4299
Range 2: 3567 to 3917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 40/117(34%) | 0/117(0%) | Minus/Minus |
Query 184 CLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS 534 C CSF N A + P L SP S L Q+ S + + I +P P +SSK GL TSTS SA+A+A++ PL G QG K ++ + S N Q+ S Subject 3567 CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS 3917
Range 1: 3299 to 4030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 84/244(34%) | 0/244(0%) | Plus/Plus |
Query 62 SALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVV 793 + ++ + +Q+ + +AE E +A FC + ++L +++ V+W F + L + NHF PC P+NGC++ AIASALGRRE+DVL L +P ++E+ C G G + L FE F I A+ D G + +N G+ISA F + EH+ H++++ S + +L V +SAL LL +NGS+I+Y PS +RA+ L L G TGV+ E +N + + G+ + +++ T++ Subject 3299 NGITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII 4030
Range 2: 4030 to 4107 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 13/26(50%) | 0/26(0%) | Plus/Plus |
Query 796 WYIWGWKEFPIQELHEEI*RKICNIC 873 WY+W W E I E+H +I RK N C Subject 4030 WYLWMW*EHSI*EVHIKITRKSYNFC 4107
Range 3: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 32/68(47%) | 0/68(0%) | Plus/Plus |
Query 761 SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKK 964 ++I +R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K + GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 4: 3466 to 3633 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 24/56(43%) | 0/56(0%) | Minus/Minus |
Query 229 RPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKI 396 +P P +SS L GL K TS S LP ADA+A+ QPL G G K* + ++ Subject 3466 KPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV 3633
Range 1: 3463 to 4095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.8 bits(432) | 0.0 | 86/211(41%) | 0/211(0%) | Plus/Plus |
Query 77 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 709 P + KQL N +AE E +A FC + ++L ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L +P+ +F+E+ +G G ++ L+ FE F IC D GE+ ++N GGRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L L G TGV+ Subject 3463 PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL 4095
Range 2: 4153 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 29/50(58%) | 0/50(0%) | Plus/Plus |
Query 767 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 916 + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4153 VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 3: 3570 to 3911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 43/114(38%) | 0/114(0%) | Minus/Minus |
Query 184 CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS 525 CSF N A + PP L SP S L Q+ K SK+ + I +P P +SS GL + TSTS A+AMA++ QP G QG K* + K+ S N Q+ S Subject 3570 CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS 3911
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3459 to 4091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 84/211(40%) | 0/211(0%) | Plus/Plus |
Query 77 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 709 P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AI+SAL RREVDVL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG+++ Y PS +RA L G TGV+ Subject 3459 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL 4091
Range 2: 4149 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 29/50(58%) | 0/50(0%) | Plus/Plus |
Query 767 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 916 + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4149 VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 3: 3632 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 35/92(38%) | 0/92(0%) | Minus/Minus |
Query 250 CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K* 525 CSF N A + P L SP S L Q+ K S + + +P P +SSK GL TSTS SA+ +A+I P G QG K* Subject 3632 CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK* 3907
Nucleotide Sequence (1428 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1048.1 | 3717.6 | 34% | 0 | 50% | NC_001948 | |
416.7 | 1071.7 | 48% | 7.947e-148 | 28% | NC_012038 | |
419.9 | 968.9 | 40% | 1.817e-153 | 33% | NC_031089 | |
411.2 | 953.8 | 41% | 4.208e-148 | 28% | NC_017859 | |
250.3 | 1024.5 | 33% | 2.599e-150 | 32% | NC_029087 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 4262 to 5686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1048.1 bits(2281) | 0.0 | 444/475(93%) | 0/475(0%) | Plus/Plus |
Query 2 CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH 1426 CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYAIFHNMHDFLLARSKGPLDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQD+DCEVEE+ESECSNEEWFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ + EAV+EFE KKASKSAATIENH+GRSCRDWLLDVALIFMKSQH Subject 4262 CKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQDEDCEVEEMESECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQH 5686
Range 2: 4264 to 5121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
546.3 bits(1186) | 0.0 | 237/286(83%) | 0/286(0%) | Minus/Minus |
Query 4 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL 861 ITF+ GSPH+FSSLTPSF PMLTLKPLKKLGSPGSKS +TFSPL AVKK * G PAKC+RKLSTL+PVMFT+S+LWLKRDKAV+HRRSSV*KESCD+RIPP LKFNPVDSP VSVSCFIPK*DWTIFFSSKLET+ ASKGPFDLA+RKSCILWK+A*SAKAAV+EPFLK G+L+SNIGFTNL LS LYLY PSS+L+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA TL Subject 4264 ITFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMTFSPLLAVKKW*RGLPAKCERKLSTLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVSCFIPK*DWTIFFSSKLETKTASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATL 5121
Range 3: 5188 to 5688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 126/167(75%) | 0/167(0%) | Minus/Minus |
Query 928 QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1428 QC DF+KIRATS+NQSL DLP *FSIVAALLLAFF+SNS TAS L LAF+G +RK S+KNFPYG ARL+ AAST GFENLRRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P TSR SF AI PTHLALVDS+LL G+WVLNH Subject 5188 QCCDFIKIRATSNNQSLHDLPA*FSIVAALLLAFFASNSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH 5688
Range 4: 4301 to 5686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
552.8 bits(1200) | 0.0 | 253/462(55%) | 0/462(0%) | Minus/Minus |
Query 41 VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP 1426 VL LH+N NI PIP T MI Y CT L LK + F I+ QW+ E + *+ PIW PQF SF+L L KF+T + HE+G+*II+FM W+ AFK TCIAQLL SSTP+ +KELL FITT+H + Q H ++PPGPG* Q+T D+GF+PF I*AF L L NF I+IL +EKHN *P +TT LLL + FI NAN++ +EV LT +Q+ Y ILP F C*K++E F SK+R+K FHPQT DVH I+IVA+ R*S +PP IICVKGIM*Y+N + E+QPS FT+ + EL HSKVGLD K N +GIQ * E++MHI+E+ +IS+SGSH ALFEVT S* +H ++KPPA V+PI +Q +YVTL SAQN I LR+ICALT ITSK +ES+T NK+ *IDV+RR+ L+ IK+H + SL +CNF KE+ K IP Subject 4301 VL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISYDILPTFGC*KMVEGFASKVREKTFHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECELFHSKVGLDYLFLLKTGNQNGIQGTF*PRQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP 5686
Range 5: 4279 to 5688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
442.8 bits(960) | 0.0 | 233/470(50%) | 0/470(0%) | Plus/Plus |
Query 19 RQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVDXXXXXXXXXXXXEHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL 1428 R +KEG +GC * P*+S R +GW L D ** + SW+HRSM + Y+ * FH +CW*S+SKHI* +K FGR* E*H A + +*V + EVC+ +V K + LQKGL DCRF *L + P YA* +K GC F+ * +++ PVLLWNE H + *I WVE Q W +S+IT*FLSHR*S V FIS PQ EHHR EGGK S+A CW+T L FNS+K GEC A R*A LL W *HW E*R GE +W* + K YAFP R* L S* V MLK* MV NP+P++* G+NQGQVG +G+E +WL*ND T+L* W A EQCM*++*KH+ K *R *F++L HG + S IF+A SC+ EA + IWE+ FP + E + +*S +*G+E +CS+ R+S R*++ GLV CC +F+EV+TL Subject 4279 R*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRSLGCRFGFQF*GEKDSPVLLWNETAHTHIW*INWVEFQKWGNSHIT*FLSHR*SAVAYCFISLQPQFGFGEHHRSEGGKFSLALCWQTPLPFFNSQKWGECHTRFAPR*A*LLQWL*R*HWKE*RC*GGEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTTL 5688
Range 6: 4350 to 5513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
413.0 bits(895) | 0.0 | 206/388(53%) | 0/388(0%) | Minus/Minus |
Query 90 GKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 1253 GK ++ SHM AS+ QL+ A KI*D +P* R LNH+LY L CFQ HMHCS+A FH QR V SFHNH + S P + PTWPWL P Y G GF*TI HLSI T + QL N HL GKA* L HH SP LHS QC* *+H*RS AH A+ + HSP F LLK+ R V QQ+A E+FPPS+ *CS + +CG*+EIK T DHLCERNHVI*E H *+STQ IH+ * * SFQSRTG Q+ K HP+ L +HAY G+ NQ+KRQS SPF*S +L +T QTS TY +A +CHS QRPK F +HMCFD DHQQ +*K H * IDRC QE HQ+S + QP Subject 4350 GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AHLGANLV*HSPHFWLLKNGRGVCQQSARENFPPSDL*CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AVSFQSRTGLSFSPQNWKPKRHPRDLLTSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP 5513
Range 7: 5619 to 5687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 13/23(57%) | 0/23(0%) | Minus/Minus |
Query 1359 SVETS*KLGQHPATNPYKIYRND 1427 SV TS*K QH TNP Y +D Subject 5619 SVVTS*KSEQHLITNPCMTYLHD 5687
Range 8: 4803 to 5531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 139/243(57%) | 0/243(0%) | Plus/Plus |
Query 543 G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH* 1271 G* S M F YHMIPFTQMI GG LYL ATI I *TS V*GWK F R LL N S F*Q K GRM C VS TS + LAL MK RRS VV G*+LCFS KM I KL+ S NAQM+NG KP S *V W+QPGPGG +W *++ + VVMK N+SL + GVE SN*AMHV+ LKA+ Q IK MIQ*P SW +V NF+S + KL N*G +HMG+ Y LS+ + H* Subject 4803 G*ISKMGEFSYHMIPFTQMIGGGLLLYLASATIWIW*TSQV*GWKVFSRTLLANPSTIF*QPKVGRMSYEICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH* 5531
Range 9: 4467 to 4760 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 53/98(54%) | 0/98(0%) | Plus/Plus |
Query 207 KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT 500 KAHM K+I FWAL+RVTY C + IG T +AGGL* +C QD VTSKRA *LPL LI S ICM S Q+ WMP F L++++ SSPT Subject 4467 KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVPWMPFWFPVLRRKR*SSPT 4760
Range 1: 4073 to 5062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
416.7 bits(903) | 0.0 | 181/330(55%) | 0/330(0%) | Plus/Plus |
Query 434 SKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ 1423 SK + LV F+EKKI++++F + LTFGESTG F++G ILI+ F ++RW+TALSRFS NL +N+T E+ + + L F T + + +R +LPGEP+F + + +G++ VRE+KL GDPWLK M+FLGQ++D E E+E E WFKTH+PL +ES RA WV KE+REVR GY + QF DEH R + L+NA ERFE+IYPRHK +D+VTFLMAV+KRL+FSKP VE AKL A+ YGK+LLD FL VPL A HN M +VR+FEEKK SKSAATIENHSGRSCRDWL DV LIFMKSQ Subject 4073 SKVFTEVFLVPGFDEKKIIKAHFPNCENILTFGESTGRTFEYGSILITQSGFSVCEQRWITALSRFSRNLLFLNLTEASFEAIAENMDDRALGKFFTQSASIDDLRKILPGEPHFADYYVPKLGKDHCVREDKLAGDPWLKTMVFLGQEEDVEKSEIEEAILAEPWFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQ 5062
Range 2: 3674 to 3997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 50/108(46%) | 0/108(0%) | Plus/Plus |
Query 29 KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPC 352 K ++V TFE FL+ GLKAGH ++ DE+QL+PPGY+DL ++ + + GDPCQS YDS+ DR+I SDI ++L Y++ SRRF N F RLPC Subject 3674 KNCNFNVCTFETFLKLAKGLKAGHTLVLDEIQLYPPGYLDLVACLVPRSCHLFVVGDPCQSNYDSEGDRSIFSGAASDIHKMLANAKYKFVTRSRRFFNKTFSGRLPC 3997
Range 3: 4567 to 5058 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 82/164(50%) | 0/164(0%) | Minus/Minus |
Query 928 DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1419 DF+ I TS++QSLQ+ PE FSIVAALLL FFSS S T ++ L AF+GT +K+SS+ FP A + A ST G ENL+RF TA+RKVT SL LCLG M S S A ++ L CSS N + *P TS SF F T A S G VLNH Subject 4567 DFINISPTSASQSLQERPEWFSIVAALLLVFFSSKSLTLLAMNSGLCWAFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH 5058
Range 4: 3673 to 3993 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 44/107(41%) | 0/107(0%) | Minus/Minus |
Query 28 GNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF 348 G+L + NLRL LY +S L MSL + K+ S S +L*QGSP + L + RS *PGG +* SS+ PAF+P+ LR SKV T + FF Subject 3673 GSLPEKVLLKNLRLLVTNLYFALASILCMSLAAPEKMLRSPSLS*LL*QGSPTTKR*QLLGTKQATRSK*PGGYN*ISSRTRVCPAFKPLANLRNVSKVQTLKLQFF 3993
Range 5: 4087 to 4314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 31/76(41%) | 0/76(0%) | Minus/Minus |
Query 448 STLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMAS 675 S L V F +S+ + AV H S K C IR+ P K PVDSP V + + K IFFSSK TR S Subject 4087 SKLASVKFKKSKFLENLESAVIHLCSHTLKPLCVIRMEPYSKVLPVDSPNVKIFSQLGKCALMIFFSSKPGTRKTS 4314
Range 6: 4388 to 4531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 17/48(35%) | 0/48(0%) | Minus/Minus |
Query 749 FAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVP 892 F I+ LAKE H PRIT++L+LS+ + I+++ G+ P Subject 4388 FNILFLAKEHHCFQPRITSKLILSNAVVFAKLWYIVIRKMWFPGQYFP 4531
Range 7: 4865 to 5062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 29/66(44%) | 0/66(0%) | Minus/Minus |
Query 1226 LRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPI 1423 L LH+ +I PIPTR++ M+FYC CT C LF + SH+ H+ IV Q + +E VK* L + Subject 4865 LGLHKYKPHIC*PIPTRASRMVFYCCCTLTCLLFFEISHTPGHEFRIVLGFQRHKFQEIVK*ILSV 5062
Range 8: 4565 to 4801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 22/79(28%) | 0/79(0%) | Minus/Minus |
Query 926 NGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPF 1162 +GH+K + I F+ W+ FK+ + I + + V + +L+ I +HF+VF + +P F +T ++ FEP+ Subject 4565 HGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPW 4801
Range 9: 4456 to 4500 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 11/15(73%) | 0/15(0%) | Minus/Minus |
Query 817 ITFSQGSPHSFSSLT 861 I F+QGSP S SSLT Subject 4456 IVFNQGSPASLSSLT 4500
Range 10: 4945 to 5067 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 19/41(46%) | 0/41(0%) | Plus/Plus |
Query 1306 CARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL 1428 C R KE K +CS+NRK F +L*GL + C +EV L Subject 4945 CERFRRKEDK*ECSNNRKPFWTLL*GLASRCGAYIYEVPDL 5067
Range 1: 4133 to 5110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
419.9 bits(910) | 0.0 | 180/326(55%) | 0/326(0%) | Plus/Plus |
Query 446 LDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ 1423 L+AILVSSF+EKKIV SY G +TFGESTGL F +G ++IS S T ++RW+TALSRF N+ LVN+T + + GK L+ FLT + + LPGEP F + +++++G++EGV+EEKL GDPWLK M+FLGQ +DCE + + E+WFKTH+P ++LE RA WV K+ KE REVR GY + QF DEH +QL+NA ERFE+IYPRH+ ND+VTF+MAV+KRL+FS P E KL +AK YGKFLLD FL K+PL H+ +M A + FE+KK SKSAATIENHS RSCRDWL+D+ LIF KSQ Subject 4133 LEAILVSSFDEKKIVYSYIGQDSNVMTFGESTGLTFDYGTVIISSVSSMTSEQRWVTALSRFKKNICLVNLTNVLWSQLALDYRGKVLHKFLTGTASVTDLSAFLPGEPKFTHSYDLNVGKDEGVKEEKLAGDPWLKGMIFLGQAEDCEEIQEIATEVKEQWFKTHLPQADLEGVRATWVHKIMAKEMREVRLGYLVSDQFTDEHSKQLGKQLTNAAERFETIYPRHRANDTVTFIMAVKKRLRFSNPAKEMGKLGQAKLYGKFLLDEFLKKIPLKRQHDKVMMDAARQAFEDKKTSKSAATIENHSNRSCRDWLIDIGLIFSKSQ 5110
Range 2: 3713 to 4093 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 60/127(47%) | 0/127(0%) | Plus/Plus |
Query 23 KSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIF 403 K +E W V TFE FL+ K+G +IFDE+QL+PPGY+DL ++ +D I +AGDPCQS YDS+KDR LG ++D RLL G SY + ++S+RF+NP F RLPC+F T +Y ++ Subject 3713 KLGQEHWTVSTFEKFLQNAELTKSGCVLIFDEIQLYPPGYLDLVSYLVPADVRIVVAGDPCQSDYDSEKDRLFLGMIEADFKRLLTGASYNFVIQSKRFINPNFIDRLPCSFGNLGGTKDKEEYLMY 4093
Range 3: 4615 to 5097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 78/161(48%) | 0/161(0%) | Minus/Minus |
Query 928 KIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1410 KIR S +QS Q+ E*FSIVAALLL F SSN+ A+SI F+G F + SSKNFP A +F S GFENL F TA+ VT SL CLG ++SNLS A ++C CSS N P+LTS S I TH+AL S+ G VLNH Subject 4615 KIRPISISQSRQERFE*FSIVAALLLVFLSSNACRAASIITLSCCRFNGIFFKNSSSKNFP*SLAWPSFPISFAGFENLNLFFTAIMNVTVSLARCLG*IVSNLSAAFVSCLPSCFECSSVN*SDTKYPNLTSLISLAMILWTHVALTPSRSACGKCVLNH 5097
Range 4: 3724 to 3972 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 36/83(43%) | 0/83(0%) | Minus/Minus |
Query 34 PSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPS 282 P SNL S P+ SF ES L*QGSPA ++ S RS *PGG +* SSK++ P F + SKV T Q S Subject 3724 PVSNLLKSASIIPRNNRSFSES*SL*QGSPATTIRTSAGTRYETRSR*PGGYN*ISSKMSTQPDLVNSAFCKNFSKVLTVQCS 3972
Range 5: 4132 to 4347 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 25/72(35%) | 0/72(0%) | Minus/Minus |
Query 445 VMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASK 660 V T+ +L ++AV H S V + + + P +PV SP V P *++TIFFSS +T +AS+ Subject 4132 VKLTKQIFFLNLERAVTHLCSDVIELTLLMITVP*SNVSPVLSPNVITLLSWPM*EYTIFFSSNDDTSIASR 4347
Range 6: 4438 to 4548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 19/37(51%) | 0/37(0%) | Minus/Minus |
Query 751 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKS 861 I S GSP SFSS TPS P LGSPG K+ Subject 4438 IPLSHGSPASFSSFTPSSLPTFKSYECVNLGSPGKKA 4548
Range 7: 4610 to 5110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 55/167(33%) | 0/167(0%) | Minus/Minus |
Query 923 LRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFL 1423 L E+ +I +PIP R+ MIF TF LK S H I+ +QWN E +K*K I L F F R+*+ + F H + II+ + W+ + KS CI QL A +F+ EL+ I S + FL +P P ++ W + F+P L Subject 4610 LAFGEDQTDINKPIPARTVRMIFNSCSTFTSLFILKCLPSRIHHNLIMLPLQWNFL*EFIK*KFSIKLSLA*FPHFLCRI*ESQPFFYSHNECDSIISSVPWVNSLKSLGCICQLFAKLL*MFISELIRY*IPQSDLSHFLSHDFVDPRRPHTLEIRLW*VCFKPLL 5110
Range 8: 3785 to 3967 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 22/61(36%) | 0/61(0%) | Minus/Minus |
Query 95 EQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMT 277 +QP ++ + SIF R+I LT IT + ++ + *I +TRR LNFI+D T Subject 3785 QQPFEISFNHTKE*SIFFRVIITLTGITCNNNTNIRRDEV*D*IQITRRVQLNFIEDEYAT 3967
Range 1: 4177 to 5151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
411.2 bits(891) | 0.0 | 179/325(55%) | 0/325(0%) | Plus/Plus |
Query 449 DAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ 1423 D ILVSSF+EKKIV+SY + LTFGESTG NF+ G IL++ S +T ++RW+TALSRFS N+ VN T E L + GK L FL +S E +LPG+P F GF+ ++G++EG+ EEKL GDPWLK M+ L Q +D E ++ E +EWFKTH+P LES RARWV K+ KEHRE R G ++QF +EH + +L+NACERFE+IYPRH+ ND+VTFLMAV+KRL+FS P E AK+ A YG+FLL FL KVPL HN LM +A +FE KK +KSAATIENH+GRSCRDWL D+ L+F KSQ Subject 4177 DVILVSSFDEKKIVESYTPDAKQILTFGESTGRNFRCGCILVTEASKYTSEKRWITALSRFSRNVAFVNATSTSFEQLLLVYKGKVLADFLCKRSTEEFFTQILPGKPVFRKGFSNAVGKDEGIMEEKLQGDPWLKTMIDLLQIEDIEETLIDQEEMQKEWFKTHLPQCELESVRARWVHKILAKEHREKRIGCMISEQFTEEHSKEQGVRLTNACERFETIYPRHRANDTVTFLMAVKKRLRFSDPNKERAKMHEAGNYGRFLLKEFLKKVPLRQKHNKELMAQAKADFEAKKTAKSAATIENHAGRSCRDWLADIGLVFSKSQ 5151
Range 2: 3769 to 4086 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 54/106(51%) | 0/106(0%) | Plus/Plus |
Query 35 EGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPC 352 + W V TFE F+ + + +G VI DE+QL+PPGY+D+CL ++ D I L GDPCQS YDS+KDRA E SDI +L+ + YRYN+ SRRF N RLPC Subject 3769 QNWRVNTFEKFIAVIKSIGSGAAVIIDEIQLYPPGYLDICLALLERDVHIFLVGDPCQSDYDSEKDRASYAFELSDIEMVLKEREYRYNIMSRRFQNANLVGRLPC 4086
Range 3: 4656 to 5147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 74/164(45%) | 0/164(0%) | Minus/Minus |
Query 928 DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 1419 D +K S++QSLQ+ P *FS+VAALL FF+S S A ++ L GTF + ++N P A A S G ENL F TA+RKVT SL LC G ++S S A +N + LCSS NC + P L SRCS +I THLA DS G VLNH Subject 4656 DLLKTSPISASQSLQERPA*FSMVAALLAVFFASKSALACAMSSLLCF*RRGTFFKNSFNRNLP*LPASCILARSLFGSENLNLFFTAIRKVTVSLALCRG*IVSKRSQAFVNLTPCSLLCSSVNCSDIMQPILFSRCSLASILCTHLARTDSNSHCGR*VLNH 5147
Range 4: 4245 to 4589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 47/115(41%) | 0/115(0%) | Minus/Minus |
Query 517 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSV 861 I F+QGSP +FSS+ PS P LKP +K G PG + S L +K S P ++ S V T++ L KR+ AV H S V E+ R+ P KF PVDSPKV + Subject 4245 IVFNQGSPCNFSSIMPSSLPTALLKPFRKTGLPGRICVKNSSVLLLQRKSASTLPL*TNKSCSNEVLVALTKATLREKRESAVIHLFSLVYFEASVTRMQPQRKFLPVDSPKVKI 4589
Range 5: 3774 to 4082 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 40/103(39%) | 0/103(0%) | Minus/Minus |
Query 40 GNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ 348 GN + F RL LYLY S +++SL S ALSF S L GSP R M S + + S *PGG S SS +T P + SKV T Q Subject 3774 GNRPTKFAFWKRRLIMLYLYSRSLSTISISLNSKAYEALSFSLS*SLWHGSPTRNMCTSRSSSAKQISR*PGG*SCISSMMTAAPEPMLLITAMNFSKVFTLQ 4082
Range 6: 4173 to 4217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.1 bits(42) | 0.0 | 9/15(60%) | 0/15(0%) | Minus/Minus |
Query 445 TIFFSSKLETRMASK 489 TIFFSS ET + S+ Subject 4173 TIFFSSNEETSITSR 4217
Range 7: 4489 to 4890 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 38/134(28%) | 0/134(0%) | Minus/Minus |
Query 761 NGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTG 1162 + H +GH +I + W+ +FK+ T I Q A V + +LLG + + +PP F T W + FEPF + + F I+ L + H P IT Q L + I + ET + G G Subject 4489 HSH*EGHGVIGPVPWVNSFKTLTSIRQSNALFFAVLLCKLLGYHAAYPLLAMLFGEYFVHPPRAYRF*FTLWQVSFEPFFLHLLLINQGFFNILNLQQVYHRFQPGITLQFLFHNALIFADGVTETFSKNGFAG 4890
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 4726 to 5217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.3 bits(540) | 0.0 | 103/164(63%) | 0/164(0%) | Plus/Plus |
Query 932 FKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQ 1423 F+TH+P +ES RARWV K+ KEHRE R G ++QF DEH E L+NACERFE+IYPRH+ ND+VTFLMAV+KRLKFS P E AKL A PYG FLL FL +VPL H+ LM A +FEEKK +KS+ATIENHSGRSCRDWL D+ LIF KSQ Subject 4726 FRTHLPRCEMESVRARWVHKILAKEHREKRVGNLVSEQFTDEHSRNDGEHLTNACERFETIYPRHRANDTVTFLMAVKKRLKFSTPCKEKAKLHEATPYGPFLLKEFLKRVPLKPQHDRELMARAKSDFEEKKTAKSSATIENHSGRSCRDWLADIGLIFSKSQ 5217
Range 2: 4252 to 4680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.2 bits(387) | 0.0 | 81/143(57%) | 0/143(0%) | Plus/Plus |
Query 458 LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDD 886 LVSSFEEKKIV SYFG + L LTFGESTG NFK+G ILI+ S H+ +RRW+TAL+RFSHNL LVN T + E + + L +FLT S + I+ LLPG P GF IGR+EGV+E K+ GDPWLK M+ L Q +D Subject 4252 LVSSFEEKKIVDSYFGPETLCLTFGESTGRNFKYGCILITDVSRHSSERRWITALTRFSHNLCLVNATCTQFEMLNLQYKNRALNYFLTGTSTPDFIKTLLPGTPKSRLGFGEKIGRDEGVKEAKMVGDPWLKTMIDLLQLED 4680
Range 3: 3823 to 4173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 57/117(49%) | 0/117(0%) | Plus/Plus |
Query 23 KSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSM 373 K++ + W V TFE FL + ++ G VI DEVQL+PPGY+DL L ++ I L GDPCQS YDS+KDR E SDI ++LE K Y YN+ SRRFVN ++ RLPC + + Subject 3823 KAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPCTLDESKL 4173
Range 4: 4725 to 5213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 84/163(52%) | 0/163(0%) | Minus/Minus |
Query 931 DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 1419 D +KI S++QS QDLP FSIVA LL FFSS S A ++ FSGT R SK PYG A N A S G EN FLTA+RKVT SL LCLG ++SN SHA + CS LCSS NC P L S CSF +I THLAL DS G V N Subject 4725 DLLKISPMSASQSRQDLPLWFSIVAELLAVFFSSKSDFALAMSSLSCWGFSGTRFRNSFSKKGPYGVASCNLAFSLQGVENFSLFLTAIRKVTVSLALCLG*IVSNRSHAFVKCSPSLRLCSSVNCSDTRLPTLFSLCSFASILCTHLALTDSISHRGKCVRN 5213
Range 5: 4254 to 4454 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 37/67(55%) | 0/67(0%) | Minus/Minus |
Query 460 VMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLET 660 V FTR +LW KR KAV H RS ++ I++ P LKF PVDSPKV PK* TIFFSS ET Subject 4254 VAFTRHKLWEKRVKAVIHLRSLECLDTSVIKMHPYLKFLPVDSPKVKHKVSGPK*LSTIFFSSNEET 4454
Range 6: 3840 to 4157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 44/106(42%) | 0/106(0%) | Minus/Minus |
Query 40 KLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ 357 ++ G S + FT RL L LY SS L +SL S K+ LSF S L GSP+++M R RS PGG S TSS IT P + R SKV T Q Subject 3840 RVHGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ 4157
Range 7: 4506 to 4655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 23/50(46%) | 0/50(0%) | Minus/Minus |
Query 712 ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK* 861 I F+QGSP F+SLTPS P+ + KP + G PGS L+ V+K* Subject 4506 IVFNQGSPTIFASLTPSSLPIFSPKPRRDFGVPGSSVLMKSGVEVPVRK* 4655
Range 8: 4765 to 5217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 49/151(32%) | 0/151(0%) | Minus/Minus |
Query 971 LRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGP 1423 L L ++ N+ QPI TRS ++F C F FL L+ H+ I+ + W+ E + K PIW C QF R +F+ F + H + +I +S I + C+ Q+L T +F+ ELLG + S + L+++L +PPGP Subject 4765 LGLAKDQSNVCQPITTRSATVVFDCGGAFGGFLLLEV*LCPGHEFPIMLGL*WHPF*EFFQQKGPIWRCFMQFGLLFTRRGEFQPFLDRH*ESDGVIGPVSGIDCLEPLACVRQMLPIITAMFISELLGYEVANSLLPMLLRQYLVHPPGP 5217
Range 9: 4264 to 4458 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 21/65(32%) | 0/65(0%) | Minus/Minus |
Query 470 TGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFK 664 T V+ ++V +T S PP + + ++ S+ EV FTES+ + L +KV + LFFK Subject 4264 TRGVYEAQVVGETSQSRYPPPFAGMPRYICDQDASIFEVSAR*FTESQTQGLWAKVTIYYLLFFK 4458
Nucleotide Sequence (327 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
241.6 | 792.8 | 48% | 1.93e-63 | 50% | NC_001948 | |
124.3 | 192.3 | 26% | 3.888e-28 | 49% | NC_008020 | |
122.0 | 176.7 | 32% | 1.903e-27 | 55% | NC_013527 | |
116.5 | 228.2 | 28% | 8.602e-26 | 40% | NC_029087 | |
118.8 | 177.2 | 31% | 1.758e-26 | 60% | NC_001361 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6323 to 6646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.6 bits(521) | 0.0 | 99/108(92%) | 0/108(0%) | Minus/Plus |
Query 2 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP 325 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FP Subject 6323 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFP 6646
Range 2: 6322 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.4 bits(372) | 0.0 | 84/108(78%) | 0/108(0%) | Plus/Minus |
Query 3 GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 GNLSTL TPTNSN D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS A*+TSIA*LS+QFSRLPIS AM I SQ++ Subject 6322 GNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN 6645
Range 3: 6325 to 6645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 54/107(50%) | 0/107(0%) | Minus/Plus |
Query 3 HLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS 323 +LG ++HC +G PGEL+* LC+ G+LC+ GR +*ND+ S L LC + + A DE+LNF +*SY LGLK LA +YYE* S*S V +*VC C A IS Subject 6325 NLGADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*IS 6645
Range 4: 6464 to 6646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 35/61(57%) | 0/61(0%) | Plus/Minus |
Query 2 WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVV 184 WK +H NT+KLK Q FN*+IHN MPNT*GLI SFK N*A HL+L+ + E +TI++ Subject 6464 WKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM 6646
Range 5: 6326 to 6421 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 16/32(50%) | 0/32(0%) | Plus/Minus |
Query 227 AQPVGIGYLNCIVINAVLQVTHFTSNANSLPN 322 +Q V IG L I++N +LQV H SNA LP+ Subject 6326 SQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD 6421
Range 6: 6327 to 6647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 54/107(50%) | 0/107(0%) | Plus/Minus |
Query 1 LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK 321 LEI*A KH QTQ T L*L+YS* S++AK+LRPN *LQ KLS SS A * HN + L SSFQ + P HR P H+ Q +SPG P QC +P+ Subject 6327 LEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPR 6647
Range 7: 6330 to 6572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 41/81(51%) | 0/81(0%) | Minus/Plus |
Query 76 GREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 318 G +ALL +W TWR L M+ R PM T W S LK** ++K + IV S S R* AQF LKL IRP*VFG++* Subject 6330 GSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII* 6572
Range 1: 5865 to 6116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 52/84(62%) | 0/84(0%) | Minus/Plus |
Query 74 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI 325 L+ ER+CIA+E NL NCIDNYAIEVSYAY+LGEL++ MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ + GV+ Subject 5865 LVLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM 6116
Range 2: 5864 to 6115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 41/84(49%) | 0/84(0%) | Plus/Minus |
Query 75 ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 ITP + + I+ N EIE CLF T TQL AS SSSFI NSPSL A*+TS+A*LS+Q +L +S A+ S S Subject 5864 ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAIHRRSSTS 6115
Range 1: 5834 to 6058 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 44/75(59%) | 0/75(0%) | Minus/Plus |
Query 101 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID* 325 L++ER+CIA+E GNL+NCIDNYAIEVSYAYRLGE +++ M+EEE +++NCVR +++NKH M+ ++ LF A++* Subject 5834 LVFERLCIAKETGNLKNCIDNYAIEVSYAYRLGERALQRMDEEETRSYFNCVRVIIKNKHHMKSNVRDLFTALE* 6058
Range 2: 5833 to 6012 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 33/60(55%) | 0/60(0%) | Plus/Minus |
Query 147 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 CLFL TQL SSS I SP+L A*+TSIA*LSMQF + P+S AMQ S+ S Subject 5833 CLFLIMTLTQLK*LRVSSSSIRWRALSPNLYA*ETSIA*LSMQFFKFPVSLAMQRRSKTS 6012
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 5857 to 6078 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 44/74(59%) | 0/74(0%) | Minus/Plus |
Query 104 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID 325 L++ER+CIA+E NL NCIDNYAIEV YAYR+GE + E M+EEE+EA+YNCVR +V+N+H + +I+ LF D Subject 5857 LVYERMCIAKETNNLHNCIDNYAIEVGYAYRMGERAKERMDEEELEAYYNCVRVIVKNRHLLLSNIAALFHQTD 6078
Range 2: 5856 to 6035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 37/60(62%) | 0/60(0%) | Plus/Minus |
Query 147 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 CLFLT TQL* AS+SSS + S SP L*A* TSIA*LS+Q +L +S AM ILS S Subject 5856 CLFLTITLTQL**ASSSSSSMRSFARSPIL*A*PTSIA*LSIQLCKLLVSFAMHILSYTS 6035
Range 3: 5867 to 6046 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 24/60(40%) | 0/60(0%) | Plus/Minus |
Query 136 TSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFS 315 T + AYF* HNC+ L P H L RP C+H Q H+YQ + Y C FS Subject 5867 TVASAYF*QSL*HNCNKLPAPPHPCVLLPARPFCKHNPLQ*HNYQYNCANYWSLLLCTFS 6046
Range 1: 5759 to 5977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 45/73(62%) | 0/73(0%) | Minus/Plus |
Query 107 LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI 325 L+ ER+CIA+EM NL NCIDNYAIEV+YAY+LGE ++ M+EEEV A YNCVR +VRNKH +R + +FE + Subject 5759 LVLERMCIAKEMNNLSNCIDNYAIEVAYAYKLGEKAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDVKQVFEVL 5977
Range 2: 5758 to 5937 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 36/60(60%) | 0/60(0%) | Plus/Minus |
Query 147 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS 326 CLF T TQL* A+TSSS I+ SP+L A TS+A*LSMQ RL IS AM ILS S Subject 5758 CLFRTMILTQL*NAATSSSSILFTAFSPNLYAYATSMA*LSMQLLRLFISFAMHILSSTS 5937
Nucleotide Sequence (248 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3338 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 66/82(80%) | 0/82(0%) | Minus/Plus |
Query 3 LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 248 LALKAGIRSFVESE V LS+P I KQL ENAYAENEMIALFC+RHH R I+ITPEYE SWKFGE E PLCGILCLKSNH Subject 3338 LALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNH 3583
Range 2: 3340 to 3585 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 53/82(65%) | 0/82(0%) | Plus/Minus |
Query 1 K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA 246 K*FD + +IPHRG S SPNFQL+SYSGV+ I L+WC QN AIISFSA*AFS +C + G ER+ T SLST D IPAF+A Subject 3340 K*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRA 3585
Range 3: 3362 to 3583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 33/74(45%) | 0/74(0%) | Plus/Minus |
Query 3 MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHER 224 +I* + +NST* PL FP+ P IFWC + +VPNAE* +H I ISI +L W K T HER Subject 3362 VI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHER 3583
Range 4: 3346 to 3582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 33/79(42%) | 0/79(0%) | Minus/Plus |
Query 4 EGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKS 240 +GR + RG+* SF P++ R+CLCR+*+D +IL AP + +TRI* LE+ G+* A MWN + +KS Subject 3346 KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKS 3582
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3430 to 3636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 20/69(29%) | 0/69(0%) | Minus/Plus |
Query 3 ESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 209 + + + P + KQL N +AE E +A FC + RL ++ E +W F +E L + NH Subject 3430 DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNH 3636
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3459 to 3635 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 20/59(34%) | 0/59(0%) | Minus/Plus |
Query 3 PTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH 179 P + KQL N +AE E +A FC + RL ++ E +W F +E L + NH Subject 3459 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNH 3635
Nucleotide Sequence (399 letters)
Query ID: | ds2015-149_56 |
Query definition: | No definition line |
Query length: | 106 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
239.3 | 870.0 | 41% | 1.295e-62 | 45% | NC_001948 | |
199.5 | 406.9 | 26% | 1.28e-50 | 34% | NC_012038 | |
194.0 | 386.3 | 25% | 5.788e-49 | 32% | NC_029089 | |
194.4 | 403.8 | 23% | 4.213e-49 | 37% | NC_029087 | |
194.4 | 517.2 | 25% | 4.263e-49 | 39% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5960 to 6325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.3 bits(516) | 0.0 | 100/122(82%) | 0/122(0%) | Minus/Plus |
Query 2 LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 367 L +F+G+ L +HLGSKLGSF+IMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCAN RLRLKTEHEGFLNMICLKAKVQFV+NPTFCGW LFKEGIFKKPQL Subject 5960 LQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQL 6325
Range 2: 6028 to 6318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 78/97(80%) | 0/97(0%) | Plus/Minus |
Query 9 GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 GFLKIPSLNK HPQNVG TN TLALRQI+FR PSCSVLS NL LAHMSSPA AIDS+PVSSYL+KVNN+ AIVLN+ VLASPVNLII DPS DP+ Subject 6028 GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLRLAHMSSPANAIDSEPVSSYLRKVNNMLAIVLNRNVLASPVNLIIENDPSFDPK 6318
Range 3: 6023 to 6322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 47/100(47%) | 0/100(0%) | Plus/Minus |
Query 5 LGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN 304 L L+D F K TPS +CG+ +KL+L KANH+ + M KP ++S HVI K *L C FVP + EQH+ H V+QK G K HY + S+L S+MN Subject 6023 LRLLEDPFLK*TPSAECGIGNKLNLGLKANHVQKTLMLCFKPQPSISTHVITCKCY*LRAC*FVPQKGEQHVSHSVKQKCAGLPSKPHYRE*SEL*SQMN 6322
Range 4: 6034 to 6315 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 43/94(46%) | 0/94(0%) | Minus/Plus |
Query 12 IQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*E 293 I+A I YNE+Y Q++ V H G +VVH +VRT+R+ VN C *HV * ++ A*+ * ++DLP* G++C + HIL M F+* R+L E Subject 6034 IKARIILYNEVYWGGQHISV*HYG*HVVHLSEVRTNRL*VNSICR**HVC*SKVAA*NRA*GFSEHDLP*GQGSVCFQSHILRMVFI*GRDLQE 6315
Range 5: 6075 to 6323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 41/83(49%) | 0/83(0%) | Minus/Plus |
Query 4 KPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPN 252 +P FC T W CCS *GTN*Q SQ L+ MTC L GL+ +M+ * *FAL+ R +L PH DGV L+K S R+ N Subject 6075 RPAHFCLTLWLTCCSPF*GTN*QALSQ*HLQVMTCVLIEGCGLKQSMRVF*T*FALRPRFSLFPIPHSADGVYLRKGSSRSLN 6323
Range 6: 6024 to 6323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 45/100(45%) | 0/100(0%) | Plus/Minus |
Query 4 VGVS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE 303 + S*R L * N+I +MW Q P *GKS H *A * TCH Q LT++L VRT +*TT P C*T+ W * SL*+ I+A I +E Subject 6024 IEAS*RSLP*INTIRRMWDWKQTEPWP*GKSCSENPHALF*AATFD*HTCHHLQMLLTQSLLVRTSER*TTC*P*C*TEMCWPPQ*TSL*RMIRALIPNE 6323
Range 1: 5339 to 5704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 84/122(69%) | 0/122(0%) | Minus/Plus |
Query 2 LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 367 L+ E++G+ L HLGSKLGSFAIMRF+GEASTFLFNTMANMLFTFLRYELTG E I+FAGDDMCA+ RLR+ EHE FL + LKAKV F TNPTFCGW L +GIFKKPQL Subject 5339 LACMEYLGLPKDLIADYCYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYELTGKEFISFAGDDMCASKRLRVSVEHESFLGKLKLKAKVNFTTNPTFCGWCLTTDGIFKKPQL 5704
Range 2: 5407 to 5703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 62/99(63%) | 0/99(0%) | Plus/Minus |
Query 3 SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 SWGFLKIPS+ + HPQ VG V T A R SCS L+LNLL AHMSSPAK ++S PV+SY +KVNN+FA+VL +KVLASP IIAKDP+L+PR Subject 5407 SWGFLKIPSVVRHHPQKVGLVVKLTFAFNFSFPRKLSCSTLTLNLLEAHMSSPAKLMNSFPVNSYRRKVNNMFAMVLKRKVLASPEKRIIAKDPNLEPR 5703
Range 3: 5405 to 5701 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 34/99(34%) | 0/99(0%) | Plus/Minus |
Query 5 LGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKM 301 LGF KD +TP K V ++ F+ *+ M + P AHVI ++N L P Q VP ESE H+ H +E+K R++H +R + G+++ Subject 5405 LGFFKDPIGCKTPPAKSWVGSEVDFCFQF*FP*KALMLNAYPQPLRGAHVIPSETNELFPSQLVPQESE*HVCHGIEKKSASLPREAHNCERPQFGTQV 5701
Elderberry carlavirus E isolate EBCVE, complete genome
Range 1: 5357 to 5722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 83/122(68%) | 0/122(0%) | Minus/Plus |
Query 2 LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 367 +S ++G+ + L V HLGSKLG+FAIMRF+GEASTFLFNTMANMLFTFLRYEL GSE I FAGDDMCANSRL +K EHEGFL + LKAKV T PTFCGW L +GI+KKPQL Subject 5357 VSLMRYLGLPADLINDYVYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYELKGSERICFAGDDMCANSRLVVKKEHEGFLAKLKLKAKVMVTTKPTFCGWHLCADGIYKKPQL 5722
Range 2: 5425 to 5721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 59/99(60%) | 0/99(0%) | Plus/Minus |
Query 3 SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 SWGFL IPS + PQ VG V TLA R PSCS + AH+SSPAK I SDP+SSYLK V ++ AIVLN+KVLASP NLIIAK PS +PR Subject 5425 SWGFLYIPSAQRCQPQKVGLVVTMTLAFNFNFARKPSCSFFTTKREFAHISSPAKHILSDPLSSYLKNVKSMLAIVLNRKVLASPENLIIAKFPSFEPR 5721
Range 3: 5423 to 5722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 32/100(32%) | 0/100(0%) | Plus/Minus |
Query 2 ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKM 301 +LGF + P+ + + LSF *+ + L *+ V AH+I ++ LGP + +P E ++H+ H VE +G +R+SHYSK S+ ++M Subject 5423 KLGFFVYPVCAKVPTAESRLGRDHDLSF*FQFC*KALVLLLHH*TRVRAHIITSEAYPLGPFKLIPQECKEHVSHSVE*EGASLSRESHYSKVSQF*TQM 5722
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 5560 to 5859 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 79/100(79%) | 0/100(0%) | Minus/Plus |
Query 2 HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 301 HLGSKLG+FAIMRF+GEASTFLFNTMANMLFTFLRYEL GSE I FAGDDMCAN+RL+LK EH GFL + LKAKVQF PTFCGW L +GI+KKPQL Subject 5560 HLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYELKGSERICFAGDDMCANTRLKLKHEHAGFLGKLKLKAKVQFTDKPTFCGWHLCSDGIYKKPQL 5859
Range 2: 5562 to 5858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 61/99(62%) | 0/99(0%) | Plus/Minus |
Query 3 SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 SWGFL IPSL+K HPQ VG N TLA + +NP+CS + +LAHMSSPAK + S P+SSYLKKVN+I AIVL +KVLASP NL+IAK P+L+P+ Subject 5562 SWGFL*IPSLHKCHPQKVGLSVNWTLAFNFNLPKNPACSCFNFKRVLAHMSSPAKHMRSLPLSSYLKKVNSILAIVLKRKVLASPENLMIAKFPNLEPK 5858
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 5558 to 5857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 77/100(77%) | 0/100(0%) | Minus/Plus |
Query 2 HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL 301 HLGSKLG+F+IMRFTGEASTFLFNTMANMLFTFLRYEL GSE+I FAGDDMC+N RLR+ +HEGFL+ + LKAKVQF PTFCGW+L +GIFK+PQL Subject 5558 HLGSKLGNFSIMRFTGEASTFLFNTMANMLFTFLRYELNGSEAICFAGDDMCSNRRLRVSNKHEGFLSKLRLKAKVQFTVKPTFCGWNLCLDGIFKRPQL 5857
Range 2: 5560 to 5856 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 65/99(66%) | 0/99(0%) | Plus/Minus |
Query 3 SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR 299 SWG LKIPS ++ HPQNVG N TLA + RNPSC +L+L H+SSPAK + S+P+SSYLKKVNN+FAIVLNKKVLASPVNL+I K PSL+PR Subject 5560 SWGRLKIPSRHRFHPQNVGLTVNWTLAFNLSLLRNPSCLFDTLSLRFEHISSPAKHMASEPLSSYLKKVNNMFAIVLNKKVLASPVNLMIEKFPSLEPR 5856
Range 3: 5563 to 5682 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 19/40(48%) | 0/40(0%) | Minus/Plus |
Query 177 WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVR 296 W AW F +EI+ * ++ VQH+G++VVHFL++RT R Subject 5563 WF*AWEFFNHEIHW*GKHFLVQHDGKHVVHFLEIRTQWFR 5682
Range 4: 5703 to 5855 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 22/51(43%) | 0/51(0%) | Minus/Plus |
Query 4 MTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPN 156 M CA T D*G ++NM+G * + + NL + HFVDG+C E PN Subject 5703 MICARTGD*GCQINMRGF*ANLG*RPKSNLQLSQHFVDGICALMEFSNAPN 5855
Range 5: 5558 to 5857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 39/100(39%) | 0/100(0%) | Plus/Minus |
Query 2 ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKM 301 +LG ++S Q PSTKC + KL + +P MF P S V AH+I ++ L +FV ESEQH+ H VEQ+ T +SH K KL +K+ Subject 5558 KLGAFENSIKAQIPSTKCWLNCKLDFGLQPKFAQKPLMFI*HPQSPVRAHIITSEAYGL*TIEFVSQESEQHVCHRVEQESACLTSESHD*KIPKLRTKV 5857