Queries
Nucleotide Sequence (473 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
176.1 | 371.4 | 40% | 1.8e-43 | 36% | NC_013470 | |
99.1 | 99.1 | 29% | 2.68e-20 | 38% | NC_021222 | |
114.7 | 114.7 | 28% | 5.475e-25 | 41% | NC_010985 | |
54.2 | 103.9 | 27% | 5.265e-16 | 31% | NC_030888 | |
79.4 | 198.1 | 23% | 6.369e-23 | 39% | NC_028498 |
Alignments
Fusarium graminearum dsRNA mycovirus-4 dsRNA1, complete genome
Range 1: 1890 to 2297 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 81/136(60%) | 0/136(0%) | Plus/Plus |
Query 2 QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMYTIA* 409 QYLGKF R H + G V +PYRP EET +YYPER G RTY RALGNLLDNYGNP A WLN LLDWLE +++LLP +W DTVQDAARDYTS+LV VP+P RW+FEEW+ L L+ + + Y A* Subject 1890 QYLGKFLRGHKLDLDGRKITVALPYRPCEETFVHMYYPERKSEGVERTYQRALGNLLDNYGNPMMADWLNKLLDWLEPQMELLPTDWLEDTVQDAARDYTSDLVRVPRPLRWTFEEWVHLCLSSDDSDPEWYMYA* 2297
Range 2: 2060 to 2293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 40/78(51%) | 0/78(0%) | Minus/Minus |
Query 172 AMVYISVISSFGVRVSASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP*LS 405 A +Y S S + +HSSN R G GT T SLV*S AASCTVS S G+ S S+QS S FS A G P*LS Subject 2060 AYIYHSGSESSDDKHKCTHSSNVQRNGRGTRTRSLV*SRAASCTVSSSQSVGNSSICGSSQSSSLFSQSAIIGFP*LS 2293
Range 3: 1892 to 2008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 18/39(46%) | 0/39(0%) | Minus/Minus |
Query 4 RSG*YRRATVSSMGR*GITTSNASPPAPTVWRRKNLPKY 120 RSG*Y VSS GR G T P ++ R+NLP+Y Subject 1892 RSG*YICTKVSSHGRYGKATVIFRPSRSSL*PRRNLPRY 2008
Range 4: 2058 to 2240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 22/61(36%) | 0/61(0%) | Minus/Minus |
Query 170 PFLKRPSFGLRNNYQLTGIVSGCVLHRVRCPFHW**VQSGLQPVKKSIQPLSSMRITVVIQ 352 P LK P+ R+ +Q+TG+V +L+R+ P *+ LQPV++ IQP+ I+V+++ Subject 2058 PLLKCPAQWARHTHQVTGVVPRRILYRILQPIGGQ*LHLWLQPVQQLIQPVRHHWISVIVE 2240
Range 5: 2047 to 2241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 24/65(37%) | 0/65(0%) | Plus/Plus |
Query 159 WEISWITTVIRMLLSG*MDFLTGWSPDWTYYQWNGHLTRCRTQPETIPVSW*LFRSPNDGRLRNG 353 W I T I+ +G*+ TGWS W+Y G R R + T PV+W + R+ G LR+G Subject 2047 WAIYSTITEIQ*WRTG*ISCWTGWSHRWSYCPPIGWRIRYRMRRGTTPVTWCVCRAHCAGHLRSG 2241
Cryphonectria parasitica bipartite mycovirus 1 strain 09269 segment RNA1, complete sequence
Range 1: 1484 to 1888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 51/135(38%) | 0/135(0%) | Plus/Plus |
Query 2 QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMYTIA 406 Q+LGK+F G A IPYRP ET RL YPE +TYLRALGN LD GN WL ++WL+ +L P EW + + +RDY++ V VP+P++ F++W L + +E ++ A Subject 1484 QFLGKYFYLGDYPVGDGAMQQPIPYRPASETYLRLLYPEYGDLPTPQTYLRALGNYLDAAGNRAMEAWLTAFIEWLQPQLSYEPNEWPDNFKRMVSRDYSNVGVEVPRPRQIDFQQWRDLVVLGREAYRRLWRTA 1888
Curvularia thermal tolerance virus RNA1, complete sequence
Range 1: 1557 to 1952 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 54/132(41%) | 0/132(0%) | Plus/Plus |
Query 2 QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMY 397 QYLGK+FRR V IPYRP +ET RL YPE A +T+LR LGN LD GNP KWL G +DWLE ++ P W S+ + +RDY+ + +P+P+R +E+W L + P+++ ++ Subject 1557 QYLGKYFRREEYPLDEGTVVVAIPYRPFKETYLRLLYPEYGSLEADQTWLRLLGNYLDAAGNPVTEKWLQGFMDWLEPQVVAPPQVWPSNFQRMVSRDYSGIGIEMPRPERMCYEQWRDLVVLPRDDYRQLW 1952
Sclerotium hydrophilum virus 1 isolate ShR#20 putative RNA-dependent RNA polymerase gene, complete cds
Range 1: 1578 to 1703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 23/42(55%) | 0/42(0%) | Plus/Plus |
Query 2 QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVG 127 Q+LGK+F V +A VIPYRPI ET+ RL YPER G Subject 1578 QFLGKYFCLREVEGDEEAIQAVIPYRPITETLDRLAYPERPG 1703
Range 2: 1743 to 1997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 26/85(31%) | 0/85(0%) | Plus/Plus |
Query 143 TYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMY 397 +Y+RA+GN +D GN +L G L WLE + + W D +Q Y +R+++EEWL L L K+ + ++ Subject 1743 SYMRAVGNYMDGAGNKLTRVFLEGYLTWLEGKGHHEGIRWREDDLQKMTGIYDGVAETFLPARRYTYEEWLDLVLVEKKVVQRVF 1997
Penicillium aurantiogriseum bipartite virus 1 segment RNA 1 putative RdRp gene, complete cds
Range 1: 1518 to 1730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 35/71(49%) | 0/71(0%) | Plus/Plus |
Query 2 QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNG 214 QYLGK+FRR VVIPYRP ET RL YPE +T+LR LGN +D GNP +WL G Subject 1518 QYLGKYFRREEYPTEDGPVGVVIPYRPFGETFLRLLYPEYGTLDVEQTWLRVLGNYIDAAGNPVTERWLQG 1730
Range 2: 1773 to 1898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 17/42(40%) | 0/42(0%) | Plus/Plus |
Query 257 EWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEE 382 +W S+ ++ +RDYT V VP+P+R S+E+W L + P+ E Subject 1773 QWPSNFLRMVSRDYTGVGVEVPRPERMSYEQWRDLVVLPRSE 1898
Range 3: 1697 to 1897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 26/67(39%) | 0/67(0%) | Minus/Minus |
Query 181 SSFGVRVSASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP 381 S G + H S D R G GT+T + V*S + H S SNQS SP+SH + GLP Subject 1697 SDLGRTTRSRHCSYDIRSGRGTSTPTPV*SRDTIRRKLEGHWANVASTCGSNQSSSPWSHRSVTGLP 1897
Nucleotide Sequence (347 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
143.1 | 268.0 | 31% | 9.584e-34 | 35% | NC_013470 | |
128.4 | 191.4 | 16% | 2.486e-29 | 50% | NC_028498 | |
128.0 | 128.0 | 28% | 3.415e-29 | 49% | NC_021222 | |
120.7 | 195.2 | 30% | 5.5e-27 | 39% | NC_026954 | |
130.7 | 201.4 | 28% | 5.079e-30 | 42% | NC_010985 |
Alignments
Fusarium graminearum dsRNA mycovirus-4 dsRNA1, complete genome
Range 1: 1197 to 1541 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 70/115(61%) | 0/115(0%) | Minus/Plus |
Query 2 PKGXXXXXXXXXXXXXLGNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD 346 PKGRLIL+LSQRDLLL G E LT+AY YPVS+GMGW+ GNV +F ER +KFFC DA K+D+SLD +++RD V+++R QF G D KYD YWEFV++SL+ API RDD Subject 1197 PKGRLILMLSQRDLLLCGVTEQLLTSAYCADDYPVSLGMGWFKGNVRKFSERYAGFKKFFCFDAAKFDSSLDDYMIRDVVNLLRQQFENGMDDKYDAYWEFVIQSLIYAPIQRDD 1541
Range 2: 1247 to 1540 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.0 bits(163) | 0.0 | 45/98(46%) | 0/98(0%) | Plus/Minus |
Query 3 SSRAIGAESKDSTTNSQYISYFGSSPPTNWVLTIDTASLTNHGSREASYFSASMQKNFSNGINRSINSVTFPPYHPMPTDTG*REGLYAVVNGVSTLP 296 SSR +GA +D TNSQY SY S P +N T S SR S +AS QKNF N RS+N T P HPMP+DTG* A V+ S P Subject 1247 SSR*MGA*IRDWITNSQYASYLSSMPFSNCCRRRFTTSRIM*SSRLLSNLAASKQKNFLNPA*RSLNLRTLPLNHPMPSDTG*SSAQ*ADVSSCSVTP 1540
Range 3: 1278 to 1511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 27/78(35%) | 0/78(0%) | Plus/Minus |
Query 32 RLHNEFPVHIVFRVVAPNKLGPYNRHGIPH*PWIQGGVIFLSIHAEELL*RN*PFNKLRHIPSIPPHADGHGIAGGFV 265 RL N+FP+ ++F + A KL H + + I+ + + AEE L + F +L HI PPHA H I G V Subject 1278 RLDNKFPICVIFVIHAVLKLLSKEIHDVSNHVIIKTTIKLGGVEAEEFLEPSIAFTELAHIAFEPPHAQRHRIIVGAV 1511
Penicillium aurantiogriseum bipartite virus 1 segment RNA 1 putative RdRp gene, complete cds
Range 1: 900 to 1193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 49/98(50%) | 0/98(0%) | Minus/Plus |
Query 2 GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD 295 G E LT+AY +++P+SVG W+ F +R ++C+DA+KYDA LDPWL++ A++I+R QFV G +P YD YW FV ESL+SAPI RDD Subject 900 GITEKLLTSAYLDAKWPISVGDSWFHEGTHGFYKRFRNYTNYYCLDAKKYDAFLDPWLIKIAINIIREQFVDGREPAYDAYWRFVEESLISAPICRDD 1193
Range 2: 1028 to 1192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.0 bits(132) | 0.0 | 32/55(58%) | 0/55(0%) | Plus/Minus |
Query 3 SSRAIGAESKDSTTNSQYISYFGSSPPTNWVLTIDTASLTNHGSREASYFSASMQ 167 SSR IGA +DS+T Q SY GS P TN L I A L +HGSR+ASYF AS Q Subject 1028 SSRQIGALMRDSSTKRQ*ASYAGSLPSTNCSLMILMAILMSHGSRKASYFLASRQ 1192
Cryphonectria parasitica bipartite mycovirus 1 strain 09269 segment RNA1, complete sequence
Range 1: 866 to 1159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 48/98(49%) | 0/98(0%) | Minus/Plus |
Query 2 GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD 295 G E PLT ++ +P++VG WY G V EF++R +P E+F+C DA K+D+ ++PW+V AV I R QF G + +Y+ YW FV ESLL+API RDD Subject 866 GATEAPLTQSWSAPCFPIAVGQSWYHGGVKEFVDRFVPHERFYCFDARKFDSFINPWMVDLAVRICRLQFHDGLNQRYNAYWNFVRESLLAAPIYRDD 1159
Rhizoctonia fumigata mycovirus isolate C-314 putative RNA-dependent RNA polymerase gene, complete cds
Range 1: 1129 to 1422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.7 bits(257) | 0.0 | 46/98(47%) | 0/98(0%) | Minus/Plus |
Query 2 GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD 295 G E PL A+KP +P+SVG GW+ G+ T F+ + + +C DAEK+D+S+ PWL+ AV+I+R QF+ G DMYW+FV ESLL + + RDD Subject 1129 GLSEQPLNDAWKPDNFPISVGRGWFHGDATRFVRKHAGASRIYCFDAEKFDSSIMPWLIHIAVTIMREQFMEGLRHDADMYWQFVEESLLHSMVFRDD 1422
Curvularia thermal tolerance virus RNA1, complete sequence
Range 1: 938 to 1228 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 48/97(49%) | 0/97(0%) | Minus/Plus |
Query 5 GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARD 295 G E LT+A+ +YP+SVG+ WY F++R + +F+C+DA KYDA LDPWL++ A++I R QFV G D +YD YW+FV ESL+ API R+ Subject 938 GTTEKLLTSAWLAEQYPISVGLSWYHEGTQAFVKRFLNFTEFYCLDARKYDAFLDPWLIQIAINICREQFVDGRDERYDAYWDFVRESLVEAPICRE 1228
Range 2: 937 to 1227 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(149) | 0.0 | 41/97(42%) | 0/97(0%) | Plus/Minus |
Query 6 SRAIGAESKDSTTNSQYISYFGSSPPTNWVLTIDTASLTNHGSREASYFSASMQKNFSNGINRSINSVTFPPYHPMPTDTG*REGLYAVVNGVSTLP 296 S IGA ++DS T SQY S S P TN L + A NHGSR+ASYF AS Q N R N+ YH PT+ G +A V+ S +P Subject 937 SLQIGASTRDSRTKSQYAS*RSSRPSTNCSLQMLMAI*INHGSRKASYFRASKQ*NSVKLRKRLTNACVPS*YHDNPTEMGYCSASHADVSSFSVVP 1227