Queries
Nucleotide Sequence (130 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
98.9 | 472.7 | 52% | 3.55e-20 | 84% | AJ306288.1 | |
98.9 | 510.2 | 52% | 3.55e-20 | 91% | X97704.2 | |
98.9 | 442.9 | 32% | 3.55e-20 | 77% | KF955619.1 | |
98.9 | 461.2 | 52% | 3.55e-20 | 81% | KJ161179.1 | |
98.9 | 431.4 | 32% | 3.55e-20 | 74% | KJ161182.1 |
Alignments
Lettuce mosaic virus complete genomic RNA, Yuhang isolate
Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.9 bits(213) | 0.0 | 42/42(100%) | 0/42(0%) | Minus/Plus |
Query 1 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 126 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 4120
Range 2: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 35/40(88%) | 0/40(0%) | Minus/Plus |
Query 3 REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK 122 REVI CTGVY+SSNH*YLRARMMYA RAL RSLT LMRRK Subject 3999 REVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRK 4118
Range 3: 3992 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 36/43(84%) | 0/43(0%) | Plus/Minus |
Query 1 FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL 129 FFLLIK VNDL+NAL+AYIILARRY**FEL *TPVH ITSL + Subject 3992 FFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITSLAI 4120
Range 4: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 34/40(85%) | 0/40(0%) | Plus/Minus |
Query 3 LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS 122 LSSHQ GQ*S QRS GVHHPRT*ILMI*A I+SCT NHFS Subject 3999 LSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFS 4118
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.9 bits(213) | 0.0 | 42/42(100%) | 0/42(0%) | Minus/Plus |
Query 1 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 126 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 4120
Range 2: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 38/40(95%) | 0/40(0%) | Minus/Plus |
Query 3 REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK 122 REVIACTGVY+SSNH*YLRARMMYAIRAL RSLTYLMRRK Subject 3999 REVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRK 4118
Range 3: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 38/40(95%) | 0/40(0%) | Plus/Minus |
Query 3 LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS 122 LSSHQIGQ*S QRSDGVHHPRT*ILMI*A INSCTRNHFS Subject 3999 LSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHFS 4118
Range 4: 3992 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 39/43(91%) | 0/43(0%) | Plus/Minus |
Query 1 FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL 129 FFLLIK*VNDL+NALMAYIILARRY**FEL *TPVHAITSL + Subject 3992 FFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITSLAV 4120
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.9 bits(213) | 0.0 | 42/42(100%) | 0/42(0%) | Minus/Plus |
Query 1 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 126 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 4120
Range 2: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 32/40(80%) | 0/40(0%) | Minus/Plus |
Query 3 REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK 122 R VI CTGVY+SSNH*YL ARMMYA RAL +SLT LMRRK Subject 3999 RGVIVCTGVYQSSNH*YLHARMMYATRALTKSLTCLMRRK 4118
Range 3: 3992 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 33/43(77%) | 0/43(0%) | Plus/Minus |
Query 1 FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL 129 FFLLIK VND +NAL+AYIILA RY**FEL *TPVH IT L + Subject 3992 FFLLIKQVNDFVNALVAYIILACRY**FEL**TPVHTITPLAV 4120
Range 4: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 31/40(78%) | 0/40(0%) | Plus/Minus |
Query 3 LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS 122 LSSHQ GQ* QRS GVHHPR *ILMI*A I+SCT NH S Subject 3999 LSSHQTGQ*FRQRSGGVHHPRM*ILMI*ALIDSCTHNHSS 4118
Lettuce mosaic virus isolate CL394, complete genome
Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.9 bits(213) | 0.0 | 42/42(100%) | 0/42(0%) | Minus/Plus |
Query 1 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 126 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 4120
Range 2: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 34/40(85%) | 0/40(0%) | Minus/Plus |
Query 3 REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK 122 R VI CTGVY+SSNH*YLRARMMYA RAL RSLT LMRRK Subject 3999 RGVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRK 4118
Range 3: 3992 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 35/43(81%) | 0/43(0%) | Plus/Minus |
Query 1 FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL 129 FFLLIK VNDL+NAL+AYIILARRY**FEL *TPVH IT L + Subject 3992 FFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITPLAV 4120
Range 4: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 33/40(82%) | 0/40(0%) | Plus/Minus |
Query 3 LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS 122 LSSHQ GQ*S QRS GVHHPRT*ILMI*A I+SCT NH S Subject 3999 LSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHSS 4118
Lettuce mosaic virus isolate CL464, complete genome
Sequence ID: KJ161182.1 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.9 bits(213) | 0.0 | 42/42(100%) | 0/42(0%) | Minus/Plus |
Query 1 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 126 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE 4120
Range 2: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 31/40(78%) | 0/40(0%) | Plus/Minus |
Query 3 LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS 122 LSSH+ Q*S QRS G HHPRT* LMI*A INSCT NHFS Subject 3999 LSSHRTSQ*SRQRSGGAHHPRT*KLMI*ALINSCTHNHFS 4118
Range 3: 3999 to 4118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 31/40(78%) | 0/40(0%) | Minus/Plus |
Query 3 REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK 122 REVI CTGVY+S NH*+LRARMM A RAL RSLT MRRK Subject 3999 REVIVCTGVYQSLNH*FLRARMMCATRALTRSLTCSMRRK 4118
Range 4: 3992 to 4120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 32/43(74%) | 0/43(0%) | Plus/Minus |
Query 1 FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL 129 FFLLI+ VNDL+NAL+A+IILARR **F+L *TPVH ITSL + Subject 3992 FFLLIEQVNDLVNALVAHIILARRN**FKL**TPVHTITSLAV 4120
Nucleotide Sequence (347 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
282.4 | 1397.4 | 28% | 1.521e-74 | 99% | X97704.2 | |
278.7 | 1377.2 | 28% | 1.93e-73 | 91% | AJ515301.1 | |
274.6 | 1373.5 | 28% | 3.365e-72 | 97% | KJ161179.1 | |
274.6 | 1373.5 | 28% | 3.365e-72 | 97% | KJ161209.1 | |
272.8 | 1365.8 | 28% | 1.199e-71 | 96% | KJ161268.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 8
Range 1: 6253 to 6597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
282.4 bits(610) | 0.0 | 114/115(99%) | 0/115(0%) | Plus/Plus |
Query 3 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL 347 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSCQESYHSSTRDRHDPSQLL Subject 6253 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSCQESYHSSTRDRHDPSQLL 6597
Range 2: 6252 to 6596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
274.2 bits(592) | 0.0 | 115/115(100%) | 0/115(0%) | Plus/Plus |
Query 2 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL 346 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL Subject 6252 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL 6596
Range 3: 6251 to 6595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 114/115(99%) | 0/115(0%) | Plus/Plus |
Query 1 ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS 345 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS Subject 6251 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS 6595
Range 4: 6251 to 6595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 115/115(100%) | 0/115(0%) | Minus/Minus |
Query 1 RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR 345 RVVRGHVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR Subject 6251 RVVRGHVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR 6595
Range 5: 6342 to 6596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 84/85(99%) | 0/85(0%) | Minus/Minus |
Query 92 KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 346 KSCEGSCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ Subject 6342 KSCEGSCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 6596
Range 6: 6252 to 6284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/11(100%) | 0/11(0%) | Minus/Minus |
Query 2 YTQLQNSVPSS 34 YTQLQNSVPSS Subject 6252 YTQLQNSVPSS 6284
Range 7: 6253 to 6453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 67/67(100%) | 0/67(0%) | Minus/Minus |
Query 3 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV 203 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV Subject 6253 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV 6453
Lettuce mosaic virus partial gene for polyprotein, VPg protein, genomic RNA, strain Tn2
Sequence ID: AJ515301.1 Length: 559 Number of Matches: 8
Range 1: 67 to 411 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.7 bits(602) | 0.0 | 113/115(98%) | 0/115(0%) | Plus/Plus |
Query 3 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL 347 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSCQESYHSSTRDRHD SQLL Subject 67 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSCQESYHSSTRDRHDSSQLL 411
Range 2: 66 to 410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 113/115(98%) | 0/115(0%) | Plus/Plus |
Query 2 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL 346 RRWN ILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T* LTTL Subject 66 RRWNIILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*LLTTL 410
Range 3: 65 to 409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 114/115(99%) | 0/115(0%) | Plus/Plus |
Query 1 ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS 345 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS Subject 65 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS 409
Range 4: 65 to 409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 113/115(98%) | 0/115(0%) | Minus/Minus |
Query 1 RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR 345 RVVR HVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKI+FHRR Subject 65 RVVRSHVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIMFHRR 409
Range 5: 156 to 410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 83/85(98%) | 0/85(0%) | Minus/Minus |
Query 92 KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 346 KSCE SCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ Subject 156 KSCEESCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 410
Range 6: 66 to 98 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 10/11(91%) | 0/11(0%) | Minus/Minus |
Query 2 YTQLQNSVPSS 34 YTQLQN+VPSS Subject 66 YTQLQNNVPSS 98
Range 7: 67 to 267 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 67/67(100%) | 0/67(0%) | Minus/Minus |
Query 3 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV 203 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV Subject 67 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV 267
Lettuce mosaic virus isolate CL394, complete genome
Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 8
Range 1: 6253 to 6597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
274.6 bits(593) | 0.0 | 112/115(97%) | 0/115(0%) | Plus/Plus |
Query 3 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL 347 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSC ESYHSSTRDRHD SQLL Subject 6253 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSC*ESYHSSTRDRHDSSQLL 6597
Range 2: 6252 to 6596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 113/115(98%) | 0/115(0%) | Plus/Plus |
Query 2 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL 346 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELIL RILPQQHSR*T* LTTL Subject 6252 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILLRILPQQHSR*T*LLTTL 6596
Range 3: 6251 to 6595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 114/115(99%) | 0/115(0%) | Plus/Plus |
Query 1 ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS 345 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS Subject 6251 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS 6595
Range 4: 6251 to 6595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 113/115(98%) | 0/115(0%) | Minus/Minus |
Query 1 RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR 345 RVVR HVYLECCCGKIL+KISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR Subject 6251 RVVRSHVYLECCCGKILNKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR 6595
Range 5: 6342 to 6596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 83/85(98%) | 0/85(0%) | Minus/Minus |
Query 92 KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 346 KSCE SCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ Subject 6342 KSCEESCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 6596
Range 6: 6252 to 6284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/11(100%) | 0/11(0%) | Minus/Minus |
Query 2 YTQLQNSVPSS 34 YTQLQNSVPSS Subject 6252 YTQLQNSVPSS 6284
Range 7: 6253 to 6453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 67/67(100%) | 0/67(0%) | Minus/Minus |
Query 3 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV 203 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV Subject 6253 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV 6453
Lettuce mosaic virus isolate CL229 polyprotein gene, partial cds
Sequence ID: KJ161209.1 Length: 1141 Number of Matches: 8
Range 1: 475 to 819 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
274.6 bits(593) | 0.0 | 112/115(97%) | 0/115(0%) | Plus/Plus |
Query 3 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL 347 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSC ESYHSSTRDRHD SQLL Subject 475 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSC*ESYHSSTRDRHDSSQLL 819
Range 2: 474 to 818 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 113/115(98%) | 0/115(0%) | Plus/Plus |
Query 2 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL 346 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELIL RILPQQHSR*T* LTTL Subject 474 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILLRILPQQHSR*T*LLTTL 818
Range 3: 473 to 817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 114/115(99%) | 0/115(0%) | Plus/Plus |
Query 1 ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS 345 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS Subject 473 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS 817
Range 4: 473 to 817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 113/115(98%) | 0/115(0%) | Minus/Minus |
Query 1 RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR 345 RVVR HVYLECCCGKIL+KISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR Subject 473 RVVRSHVYLECCCGKILNKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR 817
Range 5: 564 to 818 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 83/85(98%) | 0/85(0%) | Minus/Minus |
Query 92 KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 346 KSCE SCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ Subject 564 KSCEESCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 818
Range 6: 474 to 506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/11(100%) | 0/11(0%) | Minus/Minus |
Query 2 YTQLQNSVPSS 34 YTQLQNSVPSS Subject 474 YTQLQNSVPSS 506
Range 7: 475 to 675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 67/67(100%) | 0/67(0%) | Minus/Minus |
Query 3 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV 203 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV Subject 475 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV 675
Lettuce mosaic virus isolate Tn376 polyprotein gene, partial cds
Sequence ID: KJ161268.1 Length: 1042 Number of Matches: 8
Range 1: 450 to 794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(589) | 0.0 | 111/115(97%) | 0/115(0%) | Plus/Plus |
Query 3 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL 347 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSC +SYHSSTRDRHD SQLL Subject 450 DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSC*KSYHSSTRDRHDSSQLL 794
Range 2: 449 to 793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 112/115(97%) | 0/115(0%) | Plus/Plus |
Query 2 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL 346 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELIL +ILPQQHSR*T* LTTL Subject 449 RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILLKILPQQHSR*T*LLTTL 793
Range 3: 448 to 792 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 114/115(99%) | 0/115(0%) | Plus/Plus |
Query 1 ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS 345 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS Subject 448 ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS 792
Range 4: 448 to 792 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.6 bits(427) | 0.0 | 112/115(97%) | 0/115(0%) | Minus/Minus |
Query 1 RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR 345 RVVR HVYLECCCGKI +KISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR Subject 448 RVVRSHVYLECCCGKIFNKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR 792
Range 5: 539 to 793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 82/85(96%) | 0/85(0%) | Minus/Minus |
Query 92 KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 346 KSCE SCLSRVLLW*D *QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ Subject 539 KSCEESCLSRVLLW*DF*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ 793
Range 6: 449 to 481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/11(100%) | 0/11(0%) | Minus/Minus |
Query 2 YTQLQNSVPSS 34 YTQLQNSVPSS Subject 449 YTQLQNSVPSS 481
Range 7: 450 to 650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 67/67(100%) | 0/67(0%) | Minus/Minus |
Query 3 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV 203 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV Subject 450 WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV 650
Nucleotide Sequence (152 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
118.5 | 571.9 | 18% | 5.124e-26 | 88% | AJ515299.1 | |
118.5 | 610.0 | 18% | 5.124e-26 | 96% | X97704.2 | |
118.5 | 544.9 | 18% | 5.124e-26 | 82% | KF955619.1 | |
118.5 | 524.7 | 18% | 5.124e-26 | 78% | KJ161174.1 | |
118.5 | 546.3 | 18% | 5.124e-26 | 82% | KJ161176.1 |
Alignments
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 6
Range 1: 1143 to 1292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.5 bits(255) | 0.0 | 50/50(100%) | 0/50(0%) | Plus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 151 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE Subject 1143 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 1292
Range 2: 1143 to 1292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 45/50(90%) | 0/50(0%) | Minus/Minus |
Query 2 FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS 151 FFSFNLEIYSFFLLIK +NDL+NAL+AYIILARRY**FEL**TPVH ITS Subject 1143 FFSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITS 1292
Range 3: 1144 to 1293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 45/50(90%) | 0/50(0%) | Plus/Plus |
Query 3 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN 152 EVI CTGVYQSSNH*YLRARMMYA RAL RSL LMRRKKL*ISRLKEKN Subject 1144 EVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEKN 1293
Range 4: 1144 to 1293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 44/50(88%) | 0/50(0%) | Minus/Minus |
Query 3 VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 152 VLFLQSRNL*FLSSHQ Q*S QRS GVHHPRT*ILMI*ALI+SCT NHF Subject 1144 VLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHF 1293
Range 5: 1142 to 1291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 44/50(88%) | 0/50(0%) | Plus/Plus |
Query 1 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR 150 EK*L VQE IKAQIISIYVRG*CTP ER* DH* +**EERNYRFRD*RKR Subject 1142 EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKR 1291
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 4001 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.5 bits(255) | 0.0 | 50/50(100%) | 0/50(0%) | Plus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 151 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4002 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 48/50(96%) | 0/50(0%) | Minus/Minus |
Query 3 VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 152 VLFLQSRNL*FLSSHQI Q*S QRSDGVHHPRT*ILMI*ALINSCTRNHF Subject 4002 VLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHF 4151
Range 3: 4002 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 48/50(96%) | 0/50(0%) | Plus/Plus |
Query 3 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN 152 EVIACTGVYQSSNH*YLRARMMYAIRAL RSL YLMRRKKL*ISRLKEKN Subject 4002 EVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEKN 4151
Range 4: 4001 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 48/50(96%) | 0/50(0%) | Minus/Minus |
Query 2 FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS 151 FFSFNLEIYSFFLLIK*+NDL+NALMAYIILARRY**FEL**TPVHAITS Subject 4001 FFSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITS 4150
Range 5: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 48/50(96%) | 0/50(0%) | Plus/Plus |
Query 1 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR 150 EK*LRVQEFIKAQIISIYVRG*CTPSER* DH* I**EERNYRFRD*RKR Subject 4000 EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKR 4149
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6
Range 1: 4001 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.5 bits(255) | 0.0 | 50/50(100%) | 0/50(0%) | Plus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 151 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4005 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 42/49(86%) | 0/49(0%) | Plus/Plus |
Query 6 VIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN 152 VI CTGVYQSSNH*YL ARMMYA RAL +SL LMRRKKL*ISRLKEKN Subject 4005 VIVCTGVYQSSNH*YLHARMMYATRALTKSLTCLMRRKKL*ISRLKEKN 4151
Range 3: 4004 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 42/49(86%) | 0/49(0%) | Minus/Minus |
Query 5 FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAIT 151 FFSFNLEIYSFFLLIK +ND +NAL+AYIILA RY**FEL**TPVH IT Subject 4004 FFSFNLEIYSFFLLIKQVNDFVNALVAYIILACRY**FEL**TPVHTIT 4150
Range 4: 4005 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 41/49(84%) | 0/49(0%) | Minus/Minus |
Query 6 VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH 152 VLFLQSRNL*FLSSHQ Q* QRS GVHHPR *ILMI*ALI+SCT NH Subject 4005 VLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPRM*ILMI*ALIDSCTHNH 4151
Range 5: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 41/50(82%) | 0/50(0%) | Plus/Plus |
Query 1 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR 150 E+*L VQE IKAQIISIY+RG*CTP ER* +H* +**EERNYRFRD*RKR Subject 4000 EE*LCVQESIKAQIISIYMRG*CTPPER*RNH*PV**EERNYRFRD*RKR 4149
Lettuce mosaic virus isolate Br6, complete genome
Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 6
Range 1: 4001 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.5 bits(255) | 0.0 | 50/50(100%) | 0/50(0%) | Plus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 151 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4001 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 41/50(82%) | 0/50(0%) | Minus/Minus |
Query 2 FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS 151 FFSFNLEIY FFLLI+ IN+LINAL+AYI+LARRY**F+L**TP+H ITS Subject 4001 FFSFNLEIYRFFLLIEQINNLINALVAYIVLARRY**FKL**TPIHTITS 4150
Range 3: 4002 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 41/50(82%) | 0/50(0%) | Minus/Minus |
Query 3 VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 152 VLFLQSRNL FLSSH+ DQ*SHQR GVH PRT*ILMI*ALI+S T NHF Subject 4002 VLFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHF 4151
Range 4: 4002 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 40/50(80%) | 0/50(0%) | Plus/Plus |
Query 3 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN 152 EVI C GVYQS NH*YLRAR MYA +ALMR LI MRRKK *ISRLKEKN Subject 4002 EVIVCIGVYQSLNH*YLRARTMYATKALMRLLICSMRRKKR*ISRLKEKN 4151
Range 5: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 39/50(78%) | 0/50(0%) | Plus/Plus |
Query 1 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR 150 EK*L V E IKA IISIYVRG CTP +R**D+*S+ *EERN RFRD*RKR Subject 4000 EK*LCV*ESIKA*IISIYVRGRCTPPKR**DY*SVR*EERNDRFRD*RKR 4149
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6
Range 1: 4001 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.5 bits(255) | 0.0 | 50/50(100%) | 0/50(0%) | Plus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 151 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4002 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 43/50(86%) | 0/50(0%) | Minus/Minus |
Query 3 VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 152 VLFLQSRNL FLSSH+ DQ*SHQR GVHHPRT*ILMI*ALI+SCT NHF Subject 4002 VLFLQSRNLSFLSSHRTDQ*SHQRFGGVHHPRT*ILMI*ALIDSCTHNHF 4151
Range 3: 4001 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 43/50(86%) | 0/50(0%) | Minus/Minus |
Query 2 FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS 151 FFSFNLEIY FFLLI+ IN+LINAL+AYIILARRY**F+L**TPVH ITS Subject 4001 FFSFNLEIYRFFLLIEQINNLINALVAYIILARRY**FKL**TPVHTITS 4150
Range 4: 4002 to 4151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 42/50(84%) | 0/50(0%) | Plus/Plus |
Query 3 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN 152 EVI CTGVYQS NH*YLRARMMYA +ALMR LI MRRKK *ISRLKEKN Subject 4002 EVIVCTGVYQSLNH*YLRARMMYATKALMRLLICSMRRKKR*ISRLKEKN 4151
Range 5: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 41/50(82%) | 0/50(0%) | Plus/Plus |
Query 1 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR 150 EK*L VQE IKA IISIYVRG*CTP +R**D+*S+ *EERN RFRD*RKR Subject 4000 EK*LCVQESIKA*IISIYVRG*CTPPKR**DY*SVR*EERNDRFRD*RKR 4149
Nucleotide Sequence (287 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
227.4 | 1108.8 | 40% | 3.741e-58 | 99% | AJ515299.1 | |
227.4 | 1108.8 | 40% | 3.741e-58 | 99% | AJ306288.1 | |
227.4 | 1108.8 | 40% | 3.741e-58 | 99% | X97704.2 | |
227.4 | 1100.1 | 40% | 3.741e-58 | 97% | KF955619.1 | |
227.4 | 1035.1 | 40% | 3.741e-58 | 88% | KJ161176.1 |
Alignments
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 9
Range 1: 690 to 974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 95/95(100%) | 0/95(0%) | Plus/Plus |
Query 2 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 286 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ Subject 690 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 974
Range 2: 690 to 974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 94/95(99%) | 0/95(0%) | Minus/Minus |
Query 2 LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 286 LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY Subject 690 LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 974
Range 3: 689 to 862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 58/58(100%) | 0/58(0%) | Minus/Minus |
Query 1 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 174 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT Subject 689 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 862
Range 4: 913 to 975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 21/21(100%) | 0/21(0%) | Minus/Minus |
Query 225 FVWHQRAFRGFRNKCYCRCVC 287 FVWHQRAFRGFRNKCYCRCVC Subject 913 FVWHQRAFRGFRNKCYCRCVC 975
Range 5: 691 to 975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 94/95(99%) | 0/95(0%) | Plus/Plus |
Query 3 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK 287 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK Subject 691 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK 975
Range 6: 689 to 871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 61/61(100%) | 0/61(0%) | Plus/Plus |
Query 1 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 183 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE Subject 689 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 871
Range 7: 941 to 973 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/11(100%) | 0/11(0%) | Plus/Plus |
Query 253 RNPRKAR*CQT 285 RNPRKAR*CQT Subject 941 RNPRKAR*CQT 973
Lettuce mosaic virus complete genomic RNA, Yuhang isolate
Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 9
Range 1: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 95/95(100%) | 0/95(0%) | Plus/Plus |
Query 2 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 286 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ Subject 3548 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 3832
Range 2: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 94/95(99%) | 0/95(0%) | Minus/Minus |
Query 2 LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 286 LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY Subject 3548 LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 3832
Range 3: 3547 to 3720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 58/58(100%) | 0/58(0%) | Minus/Minus |
Query 1 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 174 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT Subject 3547 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 3720
Range 4: 3771 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 21/21(100%) | 0/21(0%) | Minus/Minus |
Query 225 FVWHQRAFRGFRNKCYCRCVC 287 FVWHQRAFRGFRNKCYCRCVC Subject 3771 FVWHQRAFRGFRNKCYCRCVC 3833
Range 5: 3549 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 94/95(99%) | 0/95(0%) | Plus/Plus |
Query 3 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK 287 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK Subject 3549 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK 3833
Range 6: 3547 to 3729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 61/61(100%) | 0/61(0%) | Plus/Plus |
Query 1 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 183 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE Subject 3547 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 3729
Range 7: 3799 to 3831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/11(100%) | 0/11(0%) | Plus/Plus |
Query 253 RNPRKAR*CQT 285 RNPRKAR*CQT Subject 3799 RNPRKAR*CQT 3831
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 9
Range 1: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 95/95(100%) | 0/95(0%) | Plus/Plus |
Query 2 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 286 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ Subject 3548 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 3832
Range 2: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 94/95(99%) | 0/95(0%) | Minus/Minus |
Query 2 LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 286 LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY Subject 3548 LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 3832
Range 3: 3547 to 3720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 58/58(100%) | 0/58(0%) | Minus/Minus |
Query 1 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 174 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT Subject 3547 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 3720
Range 4: 3771 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 21/21(100%) | 0/21(0%) | Minus/Minus |
Query 225 FVWHQRAFRGFRNKCYCRCVC 287 FVWHQRAFRGFRNKCYCRCVC Subject 3771 FVWHQRAFRGFRNKCYCRCVC 3833
Range 5: 3549 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 94/95(99%) | 0/95(0%) | Plus/Plus |
Query 3 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK 287 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK Subject 3549 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK 3833
Range 6: 3547 to 3729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 61/61(100%) | 0/61(0%) | Plus/Plus |
Query 1 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 183 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE Subject 3547 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 3729
Range 7: 3799 to 3831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/11(100%) | 0/11(0%) | Plus/Plus |
Query 253 RNPRKAR*CQT 285 RNPRKAR*CQT Subject 3799 RNPRKAR*CQT 3831
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 9
Range 1: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 95/95(100%) | 0/95(0%) | Plus/Plus |
Query 2 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 286 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ Subject 3548 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 3832
Range 2: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 94/95(99%) | 0/95(0%) | Minus/Minus |
Query 2 LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 286 LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY Subject 3548 LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 3832
Range 3: 3547 to 3720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 57/58(98%) | 0/58(0%) | Minus/Minus |
Query 1 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 174 LNWPV+FRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT Subject 3547 LNWPVKFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 3720
Range 4: 3771 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 21/21(100%) | 0/21(0%) | Minus/Minus |
Query 225 FVWHQRAFRGFRNKCYCRCVC 287 FVWHQRAFRGFRNKCYCRCVC Subject 3771 FVWHQRAFRGFRNKCYCRCVC 3833
Range 5: 3549 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 94/95(99%) | 0/95(0%) | Plus/Plus |
Query 3 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK 287 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK Subject 3549 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK 3833
Range 6: 3547 to 3729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 60/61(98%) | 0/61(0%) | Plus/Plus |
Query 1 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 183 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPE DWPV*RDE Subject 3547 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPELDWPV*RDE 3729
Range 7: 3799 to 3831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/11(100%) | 0/11(0%) | Plus/Plus |
Query 253 RNPRKAR*CQT 285 RNPRKAR*CQT Subject 3799 RNPRKAR*CQT 3831
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 9
Range 1: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 95/95(100%) | 0/95(0%) | Plus/Plus |
Query 2 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 286 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ Subject 3548 VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ 3832
Range 2: 3548 to 3832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 85/95(89%) | 0/95(0%) | Minus/Minus |
Query 2 LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY 286 LFG+SVLSVDFVISAI+GAYALT FLLLCQ LF+LHLF+LASQ+P+C+A*RYQC*EESSNVQYVR*FWYHVVH*FS*PF+ALHLHSDPLVSNSLY Subject 3548 LFGVSVLSVDFVISAIIGAYALT*FLLLCQCLFVLHLFELASQIPKCHA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFHALHLHSDPLVSNSLY 3832
Range 3: 3547 to 3720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 57/58(98%) | 0/58(0%) | Minus/Minus |
Query 1 LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 174 LNWPVRFRNATPSDISVRRRVPTF+MFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT Subject 3547 LNWPVRFRNATPSDISVRRRVPTFSMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT 3720
Range 4: 3771 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 19/21(90%) | 0/21(0%) | Minus/Minus |
Query 225 FVWHQRAFRGFRNKCYCRCVC 287 FVW QRAFRGFRNKCY RCVC Subject 3771 FVWRQRAFRGFRNKCYYRCVC 3833
Range 5: 3549 to 3833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 86/95(91%) | 0/95(0%) | Plus/Plus |
Query 3 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK 287 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A H G *LAS KR*S KR WQRRRN VSAYAP IALITKSTESTL PNK Subject 3549 *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*AWHFGI*LASSKR*STKRHWQRRRNYVSAYAPIIALITKSTESTLTPNK 3833
Range 6: 3547 to 3729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 55/61(90%) | 0/61(0%) | Plus/Plus |
Query 1 SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE 183 SKES*RQVGRSASARR+MVS*ISALHDTRTNEH ERWNSPPNTDIARR I E DWPV RDE Subject 3547 SKES*RQVGRSASARREMVS*ISALHDTRTNEHTERWNSPPNTDIARRGISESDWPVQRDE 3729
Range 7: 3799 to 3831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 10/11(91%) | 0/11(0%) | Plus/Plus |
Query 253 RNPRKAR*CQT 285 RNPRKAR* QT Subject 3799 RNPRKAR*RQT 3831
Nucleotide Sequence (120 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
90.4 | 430.1 | 33% | 1.295e-17 | 95% | X97704.2 | |
87.7 | 415.9 | 33% | 8.707e-17 | 90% | AJ515299.1 | |
87.7 | 415.9 | 33% | 8.707e-17 | 90% | KJ161179.1 | |
87.7 | 415.9 | 33% | 8.707e-17 | 90% | KJ161186.1 | |
87.2 | 407.6 | 33% | 1.196e-16 | 87% | KF955619.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 5
Range 1: 4056 to 4175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 38/40(95%) | 0/40(0%) | Minus/Minus |
Query 1 NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR 120 NPPREKSKVLFLQSRNL*FLSSHQIGQ*S QRS+GVHHPR Subject 4056 NPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPR 4175
Range 2: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 3 EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD 119 EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D Subject 4058 EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD 4174
Range 3: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 37/39(95%) | 0/39(0%) | Minus/Minus |
Query 3 IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL 119 I HARRVKFFSFNLEIYSFFLLIK*VNDL+NALMAYIIL Subject 4058 IHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIIL 4174
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 5
Range 1: 1198 to 1317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 37/40(92%) | 0/40(0%) | Minus/Minus |
Query 1 NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR 120 NPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPR Subject 1198 NPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPR 1317
Range 2: 1200 to 1316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 3 EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD 119 EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D Subject 1200 EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD 1316
Range 3: 1200 to 1316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 35/39(90%) | 0/39(0%) | Minus/Minus |
Query 3 IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL 119 I HARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIIL Subject 1200 IHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIIL 1316
Lettuce mosaic virus isolate CL394, complete genome
Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 5
Range 1: 4056 to 4175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 37/40(92%) | 0/40(0%) | Minus/Minus |
Query 1 NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR 120 NPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPR Subject 4056 NPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPR 4175
Range 2: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 3 EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD 119 EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D Subject 4058 EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD 4174
Range 3: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 35/39(90%) | 0/39(0%) | Minus/Minus |
Query 3 IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL 119 I HARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIIL Subject 4058 IHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIIL 4174
Lettuce mosaic virus isolate FR25, complete genome
Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 5
Range 1: 4056 to 4175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 37/40(92%) | 0/40(0%) | Minus/Minus |
Query 1 NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR 120 NPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPR Subject 4056 NPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPR 4175
Range 2: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 3 EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD 119 EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D Subject 4058 EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD 4174
Range 3: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 35/39(90%) | 0/39(0%) | Minus/Minus |
Query 3 IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL 119 I HARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIIL Subject 4058 IHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIIL 4174
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 5
Range 1: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 3 EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD 119 EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D Subject 4058 EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD 4174
Range 2: 4056 to 4175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 36/40(90%) | 0/40(0%) | Minus/Minus |
Query 1 NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR 120 NPPREKSKVLFLQSRNL*FLSSHQ GQ* QRS GVHHPR Subject 4056 NPPREKSKVLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPR 4175
Range 3: 4058 to 4174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 34/39(87%) | 0/39(0%) | Minus/Minus |
Query 3 IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL 119 I HARRVKFFSFNLEIYSFFLLIK VND +NAL+AYIIL Subject 4058 IHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIIL 4174
Nucleotide Sequence (316 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
249.9 | 1407.0 | 34% | 8.072e-65 | 98% | X97704.2 | |
249.4 | 1397.8 | 34% | 1.109e-64 | 98% | AJ515300.1 | |
249.0 | 1381.8 | 34% | 1.524e-64 | 97% | KJ161179.1 | |
247.1 | 1388.2 | 34% | 5.427e-64 | 98% | AJ306288.1 | |
245.3 | 1341.0 | 34% | 1.933e-63 | 95% | KJ161186.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 5660 to 5953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.9 bits(539) | 0.0 | 98/98(100%) | 0/98(0%) | Plus/Minus |
Query 21 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 314 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA Subject 5660 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 5953
Range 2: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.6 bits(534) | 0.0 | 99/99(100%) | 0/99(0%) | Minus/Plus |
Query 19 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD 315 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD Subject 5659 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD 5955
Range 3: 5660 to 5962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.0 bits(509) | 0.0 | 99/101(98%) | 0/101(0%) | Minus/Plus |
Query 12 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK 314 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++ Subject 5660 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ 5962
Range 4: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 99/99(100%) | 0/99(0%) | Plus/Minus |
Query 19 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 315 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH Subject 5659 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 5955
Range 5: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.9 bits(491) | 0.0 | 99/99(100%) | 0/99(0%) | Plus/Minus |
Query 20 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 316 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT Subject 5658 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 5954
Range 6: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 99/99(100%) | 0/99(0%) | Minus/Plus |
Query 20 RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR 316 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR Subject 5658 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR 5954
Lettuce mosaic virus partial gene for polyprotein, CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515300.1 Length: 529 Number of Matches: 6
Range 1: 181 to 474 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.4 bits(538) | 0.0 | 97/98(99%) | 0/98(0%) | Plus/Minus |
Query 21 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 314 LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA Subject 181 LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 474
Range 2: 180 to 476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.9 bits(526) | 0.0 | 98/99(99%) | 0/99(0%) | Minus/Plus |
Query 19 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD 315 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW* GFLRHGD Subject 180 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*WGFLRHGD 476
Range 3: 181 to 483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.0 bits(509) | 0.0 | 99/101(98%) | 0/101(0%) | Minus/Plus |
Query 12 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK 314 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++ Subject 181 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ 483
Range 4: 180 to 476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 99/99(100%) | 0/99(0%) | Plus/Minus |
Query 19 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 315 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH Subject 180 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 476
Range 5: 179 to 475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 98/99(99%) | 0/99(0%) | Plus/Minus |
Query 20 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 316 SPCRRNP HQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT Subject 179 SPCRRNPHHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 475
Range 6: 179 to 475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 98/99(99%) | 0/99(0%) | Minus/Plus |
Query 20 RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR 316 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR Subject 179 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR 475
Lettuce mosaic virus isolate CL394, complete genome
Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 6
Range 1: 5660 to 5953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 96/98(98%) | 0/98(0%) | Plus/Minus |
Query 21 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 314 LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*+SRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA Subject 5660 LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*ISRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 5953
Range 2: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.5 bits(512) | 0.0 | 96/99(97%) | 0/99(0%) | Minus/Plus |
Query 19 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD 315 VQNSIHTLCESLHDPSNNQQD*C DGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEI NKPF*REPAKTTSSQRHNHQLRVPGWNW* GFLRHGD Subject 5659 VQNSIHTLCESLHDPSNNQQD*CLDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEIFNKPF*REPAKTTSSQRHNHQLRVPGWNW*WGFLRHGD 5955
Range 3: 5660 to 5962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.0 bits(509) | 0.0 | 99/101(98%) | 0/101(0%) | Minus/Plus |
Query 12 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK 314 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++ Subject 5660 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ 5962
Range 4: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.4 bits(503) | 0.0 | 98/99(99%) | 0/99(0%) | Plus/Minus |
Query 19 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 315 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAI+ASILLIVAGIMKGLTESVYAILH Subject 5659 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIKASILLIVAGIMKGLTESVYAILH 5955
Range 5: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 96/99(97%) | 0/99(0%) | Plus/Minus |
Query 20 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 316 SPCRRNP HQFQPGTRS**LCL*LLVVFAGSL*NGLL+IST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPS HQSC*LLLGS*RDSQRVCMLFCT Subject 5658 SPCRRNPHHQFQPGTRS**LCL*LLVVFAGSL*NGLLNIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSRHQSC*LLLGS*RDSQRVCMLFCT 5954
Range 6: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 97/99(98%) | 0/99(0%) | Minus/Plus |
Query 20 RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR 316 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRD QQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR Subject 5658 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDIQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR 5954
Lettuce mosaic virus complete genomic RNA, Yuhang isolate
Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6
Range 1: 5660 to 5953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 96/98(98%) | 0/98(0%) | Plus/Minus |
Query 21 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 314 LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCW+HEGTHRECVCYFA Subject 5660 LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWNHEGTHRECVCYFA 5953
Range 2: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.3 bits(518) | 0.0 | 97/99(98%) | 0/99(0%) | Minus/Plus |
Query 19 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD 315 VQNSIHTLCESLHD SNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW* GFLRHGD Subject 5659 VQNSIHTLCESLHDSSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*WGFLRHGD 5955
Range 3: 5660 to 5962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.0 bits(509) | 0.0 | 99/101(98%) | 0/101(0%) | Minus/Plus |
Query 12 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK 314 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++ Subject 5660 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ 5962
Range 4: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 99/99(100%) | 0/99(0%) | Plus/Minus |
Query 19 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 315 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH Subject 5659 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 5955
Range 5: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(478) | 0.0 | 97/99(98%) | 0/99(0%) | Plus/Minus |
Query 20 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 316 SPCRRNP HQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLL S*RDSQRVCMLFCT Subject 5658 SPCRRNPHHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLES*RDSQRVCMLFCT 5954
Range 6: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 97/99(98%) | 0/99(0%) | Minus/Plus |
Query 20 RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR 316 RAK*HTHSL*VPS* QQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR Subject 5658 RAK*HTHSL*VPS*FQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR 5954
Lettuce mosaic virus isolate FR25, complete genome
Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6
Range 1: 5660 to 5953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 95/98(97%) | 0/98(0%) | Plus/Minus |
Query 21 LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 314 LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DC CVSCDCL+VFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA Subject 5660 LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCACVSCDCLKVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA 5953
Range 2: 5660 to 5962 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.8 bits(502) | 0.0 | 97/101(96%) | 0/101(0%) | Minus/Plus |
Query 12 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK 314 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTI+NFECQAGT DGGSFDMET++ Subject 5660 CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIVNFECQAGTSDGGSFDMETAQ 5962
Range 3: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 94/99(95%) | 0/99(0%) | Minus/Plus |
Query 19 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD 315 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGIL NSHS*HM+NLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHN QLRVPGWN * GFLRHGD Subject 5659 VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILSNSHS*HMHNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNRQLRVPGWN**WGFLRHGD 5955
Range 4: 5659 to 5955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 96/99(97%) | 0/99(0%) | Plus/Minus |
Query 19 VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 315 VSMSKEPPS VPAWHSKL IVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTV KYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH Subject 5659 VSMSKEPPSLVPAWHSKLTIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTV*KYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH 5955
Range 5: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 94/99(95%) | 0/99(0%) | Plus/Minus |
Query 20 SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 316 SPCRRNP H FQPGTRS* LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRL MC*L*LF SIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT Subject 5658 SPCRRNPHH*FQPGTRS*RLCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLCMC*L*LFESIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT 5954
Range 6: 5658 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 96/99(97%) | 0/99(0%) | Minus/Plus |
Query 20 RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR 316 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNT KQSQLTH QSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR Subject 5658 RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTFKQSQLTHAQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR 5954
Nucleotide Sequence (188 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
114.7 | 620.9 | 26% | 9.19e-25 | 90% | KJ161186.1 | |
117.5 | 627.7 | 26% | 1.367e-25 | 94% | X97704.2 | |
112.9 | 603.5 | 26% | 3.274e-24 | 91% | KM016821.1 | |
110.6 | 595.2 | 26% | 1.602e-23 | 91% | KJ161176.1 | |
109.7 | 592.5 | 26% | 3.024e-23 | 89% | KJ161173.1 |
Alignments
Lettuce mosaic virus isolate FR25, complete genome
Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6
Range 1: 1276 to 1419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 46/48(96%) | 0/48(0%) | Plus/Plus |
Query 1 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR 144 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK GHTLH+APYGSIQR Subject 1276 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHYAPYGSIQR 1419
Range 2: 1278 to 1418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 46/47(98%) | 0/47(0%) | Minus/Minus |
Query 3 RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS 143 RCIEPYGA*WSV*P+FANL*LHHLPYP*QRIYCVALNQIFL*FLTSS Subject 1278 RCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS 1418
Range 3: 1277 to 1417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 44/47(94%) | 0/47(0%) | Minus/Minus |
Query 2 AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ 142 AVLNHTVR+GVCDL+LRIYNFTIYPTPNNEYT SP*TKFSYDF*RVQ Subject 1277 AVLNHTVRNGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQ 1417
Range 4: 1277 to 1420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 45/48(94%) | 0/48(0%) | Plus/Plus |
Query 2 LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE 145 LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+ Subject 1277 LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD 1420
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 1276 to 1419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 1 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR 144 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK GHTLHHAPYGSIQR Subject 1276 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQR 1419
Range 2: 1277 to 1417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 45/47(96%) | 0/47(0%) | Minus/Minus |
Query 2 AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ 142 AVLNHTVRDGVCDL+LRIYNFTIYPTPNNEYT SP*TKFSYDF*RVQ Subject 1277 AVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQ 1417
Range 3: 1278 to 1418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 46/47(98%) | 0/47(0%) | Minus/Minus |
Query 3 RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS 143 RCIEPYGA*WSV*P+FANL*LHHLPYP*QRIYCVALNQIFL*FLTSS Subject 1278 RCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS 1418
Range 4: 1277 to 1420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 45/48(94%) | 0/48(0%) | Plus/Plus |
Query 2 LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE 145 LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+ Subject 1277 LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD 1420
Lettuce mosaic virus isolate Forte Lavras MG polyprotein gene, partial cds
Sequence ID: KM016821.1 Length: 2697 Number of Matches: 6
Range 1: 1276 to 1419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 45/48(94%) | 0/48(0%) | Plus/Plus |
Query 1 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR 144 IELVKNHRKIWFKATQ+IRC*G GRW*SYRFAK GHTLHHAPYGSIQR Subject 1276 IELVKNHRKIWFKATQHIRC*GEGRW*SYRFAK*GHTLHHAPYGSIQR 1419
Range 2: 1277 to 1417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 43/47(91%) | 0/47(0%) | Minus/Minus |
Query 2 AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ 142 AVLNHTVRDGVCDL+LRIYNFTIYP PNNEY SP*TKFSYDF*RVQ Subject 1277 AVLNHTVRDGVCDLTLRIYNFTIYPPPNNEYAVSP*TKFSYDF*RVQ 1417
Range 3: 1277 to 1420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 45/48(94%) | 0/48(0%) | Plus/Plus |
Query 2 LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE 145 LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+ Subject 1277 LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD 1420
Range 4: 1278 to 1418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 44/47(94%) | 0/47(0%) | Minus/Minus |
Query 3 RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS 143 RCIEPYGA*WSV*P+FANL*LHHLP P*QRI CVALNQIFL*FLTSS Subject 1278 RCIEPYGA*WSV*PYFANL*LHHLPSP*QRICCVALNQIFL*FLTSS 1418
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6
Range 1: 1276 to 1416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 44/47(94%) | 0/47(0%) | Plus/Plus |
Query 1 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQ 141 IELVKNHRKIWFKATQ+IRC*G GRW*SYRFAK GHTLHHAPYGSIQ Subject 1276 IELVKNHRKIWFKATQHIRC*GEGRW*SYRFAK*GHTLHHAPYGSIQ 1416
Range 2: 1277 to 1420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 45/48(94%) | 0/48(0%) | Plus/Plus |
Query 2 LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE 145 LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+ Subject 1277 LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD 1420
Range 3: 1277 to 1414 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 42/46(91%) | 0/46(0%) | Minus/Minus |
Query 2 VLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ 139 VLNHTVRDGVCDL+LRIYNFTIYP PNNEY SP*TKFSYDF*RVQ Subject 1277 VLNHTVRDGVCDLTLRIYNFTIYPPPNNEYAVSP*TKFSYDF*RVQ 1414
Range 4: 1278 to 1415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 43/46(93%) | 0/46(0%) | Minus/Minus |
Query 3 CIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS 140 CIEPYGA*WSV*P+FANL*LHHLP P*QRI CVALNQIFL*FLTSS Subject 1278 CIEPYGA*WSV*PYFANL*LHHLPSP*QRICCVALNQIFL*FLTSS 1415
Lettuce mosaic virus isolate 13, complete genome
Sequence ID: KJ161173.1 Length: 10080 Number of Matches: 6
Range 1: 1276 to 1419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 43/48(90%) | 0/48(0%) | Plus/Plus |
Query 1 IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR 144 IELVKNHRKIWFKATQ+IRC*G GRW*+YRFAK GHT HHAPYGSIQR Subject 1276 IELVKNHRKIWFKATQHIRC*GEGRW*NYRFAK*GHTFHHAPYGSIQR 1419
Range 2: 1277 to 1417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 42/47(89%) | 0/47(0%) | Minus/Minus |
Query 2 AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ 142 AVLNHTVRDG+CDL+LRIYNFTIYP PNNEY SP*TKFSYDF*RVQ Subject 1277 AVLNHTVRDGMCDLTLRIYNFTIYPPPNNEYAVSP*TKFSYDF*RVQ 1417
Range 3: 1277 to 1420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 44/48(92%) | 0/48(0%) | Plus/Plus |
Query 2 LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE 145 LNSSKIIGKFGLRR SIFVVRGRVDGE+IDSQ KVTHSITHRMVQYS+ Subject 1277 LNSSKIIGKFGLRRHSIFVVRGRVDGEIIDSQSKVTHSITHRMVQYSD 1420
Range 4: 1278 to 1418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 42/47(89%) | 0/47(0%) | Minus/Minus |
Query 3 RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS 143 RCIEPYGA*W+V*P+FANL* HHLP P*QRI CVALNQIFL*FLTSS Subject 1278 RCIEPYGA*WNV*PYFANL*FHHLPSP*QRICCVALNQIFL*FLTSS 1418
Nucleotide Sequence (200 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
169.2 | 918.2 | 43% | 4.721e-41 | 98% | X97704.2 | |
169.2 | 892.6 | 34% | 4.721e-41 | 94% | KM016821.1 | |
169.2 | 801.9 | 34% | 4.721e-41 | 80% | KJ161175.1 | |
169.2 | 881.1 | 34% | 4.721e-41 | 92% | KJ161176.1 | |
169.2 | 861.0 | 34% | 4.721e-41 | 89% | KJ161177.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 1528
Range 2: 1330 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH 198 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT+LLERILNLFHAQHPKGHTPYLHIRF*C*RMWH Subject 1330 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHPKGHTPYLHIRF*C*RMWH 1527
Range 3: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 65/66(98%) | 0/66(0%) | Minus/Minus |
Query 2 SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 199 SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEV CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN Subject 1331 SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 1528
Range 4: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL 200 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH TSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL Subject 1332 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL 1529
Range 5: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 65/66(98%) | 0/66(0%) | Minus/Minus |
Query 3 QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 200 QCHIL*HQNLMCRYGVCPLGCCA*NKLSIRSRS VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q Subject 1332 QCHIL*HQNLMCRYGVCPLGCCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 1529
Range 6: 1360 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 56/56(100%) | 0/56(0%) | Minus/Minus |
Query 31 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 198 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI Subject 1360 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 1527
Lettuce mosaic virus isolate Forte Lavras MG polyprotein gene, partial cds
Sequence ID: KM016821.1 Length: 2697 Number of Matches: 6
Range 1: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 1528
Range 2: 1330 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 63/66(95%) | 0/66(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH 198 RC*G GRW*SYRFAK*GHTLHHAPYGSIQRRRT+LLERILNLFHAQHPKGHTPYLHIR *C*RMWH Subject 1330 RC*GEGRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHPKGHTPYLHIRL*C*RMWH 1527
Range 3: 1331 to 1525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.6 bits(331) | 0.0 | 62/65(95%) | 0/65(0%) | Minus/Minus |
Query 2 ATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 196 ATFFNIK+*CAGMEYVLWGVVHETS*VSVPEV CDVAVLNHTVRDGVCDLTLRIYNFTIYP PNN Subject 1331 ATFFNIKV*CAGMEYVLWGVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPPPNN 1525
Range 4: 1332 to 1526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 62/65(95%) | 0/65(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVA 197 LLG G*MVKL*IRKVRSHTPSRTVWFNTATSH TSGTDTQLVSCTTPQRTYSIPAHQ LMLKNVA Subject 1332 LLGGG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIPAHQTLMLKNVA 1526
Range 5: 1360 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 56/56(100%) | 0/56(0%) | Minus/Minus |
Query 31 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 198 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI Subject 1360 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 1527
Range 6: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 62/66(94%) | 0/66(0%) | Minus/Minus |
Query 3 QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 200 +CHIL*HQ+LMCRYGVCPLGCCA*NKLSIRSRS VRRRCIEPYGA*WSV*PYFANL*LHHLP P*Q Subject 1332 RCHIL*HQSLMCRYGVCPLGCCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPSP*Q 1529
Lettuce mosaic virus isolate CL117, complete genome
Sequence ID: KJ161175.1 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 1528
Range 2: 1360 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 56/56(100%) | 0/56(0%) | Minus/Minus |
Query 31 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 198 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI Subject 1360 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 1527
Range 3: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 53/66(80%) | 0/66(0%) | Minus/Minus |
Query 2 SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 199 SATFF+IKI*CAG+EYV WGVVHETS*+SVPEV CD+ VLNHTV DGVCDL LRIY+FTIY P+N Subject 1331 SATFFDIKI*CAGVEYVFWGVVHETS*ISVPEVSCDITVLNHTVCDGVCDLALRIYHFTIYSPPDN 1528
Range 4: 1330 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 53/66(80%) | 0/66(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH 198 RC G RW*S RFAK GHTLHH PYGSIQ RT+LLERI NLFHAQHPK HTP+LHIRF*C RMWH Subject 1330 RCQGESRW*SDRFAKQGHTLHHTPYGSIQ*CRTKLLERIFNLFHAQHPKRHTPHLHIRF*CQRMWH 1527
Range 5: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 53/66(80%) | 0/66(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL 200 L G *MVK *IRK RSHTPS TVWFNT SH TSGTD QLVSCTTPQ+TYS PAHQILM KNVAL Subject 1332 LSGGE*MVK**IRKARSHTPSHTVWFNTVMSHETSGTDIQLVSCTTPQKTYSTPAHQILMSKNVAL 1529
Range 6: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 55/66(83%) | 0/66(0%) | Minus/Minus |
Query 3 QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 200 QCHIL*HQNLMCR GVC LGCCA*NKL+IRSRS VR CIEPYG *WSV*P FANL LHHL P*Q Subject 1332 QCHIL*HQNLMCRCGVCLLGCCA*NKLNIRSRSFVRHHCIEPYGV*WSV*PCFANLSLHHLLSP*Q 1529
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 1528
Range 2: 1330 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH 198 RC*G GRW*SYRFAK*GHTLHHAPYGSIQ RRT+LLER+LNLFHAQ+PKGHTPYLHIRF*C*RMWH Subject 1330 RC*GEGRW*SYRFAK*GHTLHHAPYGSIQ*RRTKLLERVLNLFHAQYPKGHTPYLHIRF*C*RMWH 1527
Range 3: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 61/66(92%) | 0/66(0%) | Minus/Minus |
Query 2 SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 199 SATFFNIKI*CAGMEYVLWG+VHETS*V VPEV CDV VLNHTVRDGVCDLTLRIYNFTIYP PNN Subject 1331 SATFFNIKI*CAGMEYVLWGIVHETS*VPVPEVSCDVTVLNHTVRDGVCDLTLRIYNFTIYPPPNN 1528
Range 4: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL 200 LLG G*MVKL*IRKVRSHTPSRTVWFNT TSH TSGT TQLVSCT PQRTYSIPAHQILMLKNVAL Subject 1332 LLGGG*MVKL*IRKVRSHTPSRTVWFNTVTSHETSGTGTQLVSCTIPQRTYSIPAHQILMLKNVAL 1529
Range 5: 1360 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 56/56(100%) | 0/56(0%) | Minus/Minus |
Query 31 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 198 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI Subject 1360 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 1527
Range 6: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.5 bits(272) | 0.0 | 61/66(92%) | 0/66(0%) | Minus/Minus |
Query 3 QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 200 QCHIL*HQNLMCRYGVCPLG CA*NKLS RSRS VRR CIEPYGA*WSV*PYFANL*LHHLP P*Q Subject 1332 QCHIL*HQNLMCRYGVCPLGYCA*NKLSTRSRSFVRRHCIEPYGA*WSV*PYFANL*LHHLPSP*Q 1529
Lettuce mosaic virus isolate CL246, complete genome
Sequence ID: KJ161177.1 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 199 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT 1528
Range 2: 1330 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.9 bits(323) | 0.0 | 59/66(89%) | 0/66(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH 198 RC*G GRW*SYRFAK*G+TLHHAP+GSIQRRRT+LLERI NLFHAQHPKGHTP+LHIRF*C RMWH Subject 1330 RC*GEGRW*SYRFAK*GYTLHHAPHGSIQRRRTKLLERIFNLFHAQHPKGHTPHLHIRF*CQRMWH 1527
Range 3: 1331 to 1528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 59/66(89%) | 0/66(0%) | Minus/Minus |
Query 2 SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 199 SATFF+IKI*CAG+EYVLWGVVHETS*+SVPEV CDVAVLNH VRDGVC+LTLRIYNFTIYP PNN Subject 1331 SATFFDIKI*CAGVEYVLWGVVHETS*ISVPEVSCDVAVLNHAVRDGVCNLTLRIYNFTIYPPPNN 1528
Range 4: 1332 to 1529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 59/66(89%) | 0/66(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL 200 LLG G*MVKL*IRKVR HTPSRT WFNTATSH TSGTD QLVSCTTPQRTYS PAHQILM KNVAL Subject 1332 LLGGG*MVKL*IRKVRLHTPSRTAWFNTATSHETSGTDIQLVSCTTPQRTYSTPAHQILMSKNVAL 1529
Range 5: 1360 to 1527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 55/56(98%) | 0/56(0%) | Minus/Minus |
Query 31 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 198 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*T+RCVMECVTLLCESI Subject 1360 VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TMRCVMECVTLLCESI 1527
Range 6: 1332 to 1526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 60/65(92%) | 0/65(0%) | Minus/Minus |
Query 3 CHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 197 CHIL*HQNLMCR GVCPLGCCA*NKL+IRSRS VRRRCIEP GA*WSV*PYFANL*LHHLP P*Q Subject 1332 CHIL*HQNLMCRCGVCPLGCCA*NKLNIRSRSFVRRRCIEPCGA*WSV*PYFANL*LHHLPSP*Q 1526
Nucleotide Sequence (159 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
110.1 | 572.2 | 14% | 1.67e-23 | 94% | X97704.2 | |
103.7 | 545.6 | 14% | 1.425e-21 | 87% | AJ515299.1 | |
101.9 | 536.5 | 14% | 5.075e-21 | 88% | KJ161186.1 | |
101.9 | 516.3 | 14% | 5.075e-21 | 85% | KJ161190.1 | |
101.9 | 516.3 | 14% | 5.075e-21 | 85% | KJ161191.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 49/50(98%) | 0/50(0%) | Plus/Plus |
Query 9 REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK 158 REVIACTGVYQSSNH*YLRARMMYAIRAL RSLTYLMRRKKL*ISRLKEK Subject 3999 REVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEK 4148
Range 2: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 48/50(96%) | 0/50(0%) | Minus/Minus |
Query 9 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS 158 LFLQSRNL*FLSSHQIGQ*S QRSDGVHHPR+*ILMI*ALINSCTRNHFS Subject 3999 LFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHFS 4148
Range 3: 3992 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 49/52(94%) | 0/52(0%) | Minus/Minus |
Query 2 FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL 157 FSFNLEIYSFFLLIK*VNDL+NALMAYIILARRY**FEL**TPVHAITSL + Subject 3992 FSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITSLAV 4147
Range 4: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 48/50(96%) | 0/50(0%) | Plus/Plus |
Query 10 EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR 159 EK*LRVQEFIKAQIISIY RG*CTPSER* DH*PI**EERNYRFRD*RKR Subject 4000 EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKR 4149
Range 5: 3995 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.8 bits(207) | 0.0 | 50/51(98%) | 0/51(0%) | Plus/Plus |
Query 5 SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 157 SERSDCVYRSLSKLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 4147
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 6
Range 1: 1138 to 1290 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 47/51(92%) | 0/51(0%) | Plus/Plus |
Query 6 VREVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK 158 VREVI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEK Subject 1138 VREVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEK 1290
Range 2: 1134 to 1289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 47/52(90%) | 0/52(0%) | Minus/Minus |
Query 2 FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL 157 FSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH ITSLT+ Subject 1134 FSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITSLTV 1289
Range 3: 1138 to 1290 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 45/51(88%) | 0/51(0%) | Minus/Minus |
Query 6 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFSH 158 LFLQSRNL*FLSSHQ GQ*S QRS GVHHPR+*ILMI*ALI+SCT NHFSH Subject 1138 LFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFSH 1290
Range 4: 1137 to 1289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.8 bits(207) | 0.0 | 50/51(98%) | 0/51(0%) | Plus/Plus |
Query 5 SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 157 SERSDCVYRSLSKLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK Subject 1137 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 1289
Range 5: 1136 to 1291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 45/52(87%) | 0/52(0%) | Plus/Plus |
Query 4 E*EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR 159 +*EK*L VQE IKAQIISIY RG*CTP ER* DH*P+**EERNYRFRD*RKR Subject 1136 Q*EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKR 1291
Lettuce mosaic virus isolate FR25, complete genome
Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6
Range 1: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 46/50(92%) | 0/50(0%) | Plus/Plus |
Query 9 REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK 158 REVI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEK Subject 3999 REVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEK 4148
Range 2: 3992 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 46/52(88%) | 0/52(0%) | Minus/Minus |
Query 2 FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL 157 FSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH ITSL + Subject 3992 FSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITSLAV 4147
Range 3: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 44/50(88%) | 0/50(0%) | Minus/Minus |
Query 9 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS 158 LFLQSRNL*FLSSHQ GQ*S QRS GVHHPR+*ILMI*ALI+SCT NHFS Subject 3999 LFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFS 4148
Range 4: 3995 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.8 bits(207) | 0.0 | 50/51(98%) | 0/51(0%) | Plus/Plus |
Query 5 SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 157 SERSDCVYRSLSKLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 4147
Range 5: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 44/50(88%) | 0/50(0%) | Plus/Plus |
Query 10 EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR 159 EK*L VQE IKAQIISIY RG*CTP ER* DH*P+**EERNYRFRD*RKR Subject 4000 EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKR 4149
Lettuce mosaic virus isolate Tn516, complete genome
Sequence ID: KJ161190.1 Length: 10080 Number of Matches: 6
Range 1: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 44/50(88%) | 0/50(0%) | Minus/Minus |
Query 9 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS 158 LFLQSRNL FLSSH+ GQ*SHQRS G HHPR+*ILMI*ALINSCTRNHFS Subject 3999 LFLQSRNLSFLSSHRTGQ*SHQRSGGAHHPRT*ILMI*ALINSCTRNHFS 4148
Range 2: 3995 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.8 bits(207) | 0.0 | 49/51(96%) | 0/51(0%) | Plus/Plus |
Query 5 SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 157 SERSDCVYRSL KLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK Subject 3995 SERSDCVYRSLLKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 4147
Range 3: 3992 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 44/52(85%) | 0/52(0%) | Minus/Minus |
Query 2 FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL 157 FSFNLEIY FFLLI+ VNDLINAL+A+IILARRY**F+L**TPVHAITSL + Subject 3992 FSFNLEIYRFFLLIEQVNDLINALVAHIILARRY**FKL**TPVHAITSLAV 4147
Range 4: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 43/50(86%) | 0/50(0%) | Plus/Plus |
Query 9 REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK 158 REVIACTGVY S NH*YLRARMM A RALMRSLT MRRKK *ISRLKEK Subject 3999 REVIACTGVY*SLNH*YLRARMMCATRALMRSLTCSMRRKKR*ISRLKEK 4148
Range 5: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 43/50(86%) | 0/50(0%) | Plus/Plus |
Query 10 EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR 159 EK*LRVQEFIKA IISIY RG*C P ER**DH*P+ *EERN RFRD*RKR Subject 4000 EK*LRVQEFIKA*IISIYVRG*CAPPER**DH*PVR*EERNDRFRD*RKR 4149
Lettuce mosaic virus isolate Tn516 ev, complete genome
Sequence ID: KJ161191.1 Length: 10080 Number of Matches: 6
Range 1: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 44/50(88%) | 0/50(0%) | Minus/Minus |
Query 9 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS 158 LFLQSRNL FLSSH+ GQ*SHQRS G HHPR+*ILMI*ALINSCTRNHFS Subject 3999 LFLQSRNLSFLSSHRTGQ*SHQRSGGAHHPRT*ILMI*ALINSCTRNHFS 4148
Range 2: 3995 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.8 bits(207) | 0.0 | 49/51(96%) | 0/51(0%) | Plus/Plus |
Query 5 SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 157 SERSDCVYRSL KLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK Subject 3995 SERSDCVYRSLLKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK 4147
Range 3: 3992 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 44/52(85%) | 0/52(0%) | Minus/Minus |
Query 2 FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL 157 FSFNLEIY FFLLI+ VNDLINAL+A+IILARRY**F+L**TPVHAITSL + Subject 3992 FSFNLEIYRFFLLIEQVNDLINALVAHIILARRY**FKL**TPVHAITSLAV 4147
Range 4: 3999 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 43/50(86%) | 0/50(0%) | Plus/Plus |
Query 9 REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK 158 REVIACTGVY S NH*YLRARMM A RALMRSLT MRRKK *ISRLKEK Subject 3999 REVIACTGVY*SLNH*YLRARMMCATRALMRSLTCSMRRKKR*ISRLKEK 4148
Range 5: 4000 to 4149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 43/50(86%) | 0/50(0%) | Plus/Plus |
Query 10 EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR 159 EK*LRVQEFIKA IISIY RG*C P ER**DH*P+ *EERN RFRD*RKR Subject 4000 EK*LRVQEFIKA*IISIYVRG*CAPPER**DH*PVR*EERNDRFRD*RKR 4149
Nucleotide Sequence (326 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
194.0 | 1048.1 | 33% | 5.631e-48 | 93% | X97704.2 | |
189.8 | 1027.0 | 33% | 9.817e-47 | 90% | AJ515299.1 | |
189.8 | 1027.0 | 33% | 9.817e-47 | 90% | KJ161179.1 | |
189.8 | 1027.0 | 33% | 9.817e-47 | 90% | KJ161186.1 | |
185.3 | 994.5 | 33% | 2.351e-45 | 88% | KF955619.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 7
Range 1: 4055 to 4306 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 78/84(93%) | 0/84(0%) | Minus/Minus |
Query 3 VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA 254 V+ FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK*+NDL+NALMAYIILA Subject 4055 VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILA 4306
Range 2: 4053 to 4292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 77/80(96%) | 0/80(0%) | Plus/Plus |
Query 1 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 240 RARMMYAIRAL RSL YLMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP Subject 4053 RARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 4292
Range 3: 4055 to 4294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 77/80(96%) | 0/80(0%) | Plus/Plus |
Query 3 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK 242 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE 4294
Range 4: 4053 to 4289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.2 bits(387) | 0.0 | 76/79(96%) | 0/79(0%) | Minus/Minus |
Query 1 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT 237 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQI Q*S QRSDGVHHPRT Subject 4053 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT 4289
Range 5: 4054 to 4293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.8 bits(373) | 0.0 | 76/80(95%) | 0/80(0%) | Plus/Plus |
Query 2 VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ 241 VRG*CTPSER* DH* I**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+ Subject 4054 VRG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR 4293
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 7
Range 1: 1197 to 1448 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 76/84(90%) | 0/84(0%) | Minus/Minus |
Query 3 VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA 254 V+ FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +NDL+NAL+AYIILA Subject 1197 VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA 1448
Range 2: 1197 to 1436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 77/80(96%) | 0/80(0%) | Plus/Plus |
Query 3 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK 242 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+ Subject 1197 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE 1436
Range 3: 1195 to 1434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 75/80(94%) | 0/80(0%) | Plus/Plus |
Query 1 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 240 RARMMYA RAL RSL LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP Subject 1195 RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 1434
Range 4: 1195 to 1431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 74/79(94%) | 0/79(0%) | Minus/Minus |
Query 1 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT 237 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ Q*S QRS GVHHPRT Subject 1195 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT 1431
Range 5: 1196 to 1435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 74/80(92%) | 0/80(0%) | Plus/Plus |
Query 2 VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ 241 VRG*CTP ER* DH* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+ Subject 1196 VRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR 1435
Lettuce mosaic virus isolate CL394, complete genome
Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 7
Range 1: 4055 to 4306 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 76/84(90%) | 0/84(0%) | Minus/Minus |
Query 3 VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA 254 V+ FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +NDL+NAL+AYIILA Subject 4055 VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA 4306
Range 2: 4055 to 4294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 77/80(96%) | 0/80(0%) | Plus/Plus |
Query 3 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK 242 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE 4294
Range 3: 4053 to 4292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 75/80(94%) | 0/80(0%) | Plus/Plus |
Query 1 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 240 RARMMYA RAL RSL LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP Subject 4053 RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 4292
Range 4: 4053 to 4289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 74/79(94%) | 0/79(0%) | Minus/Minus |
Query 1 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT 237 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ Q*S QRS GVHHPRT Subject 4053 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT 4289
Range 5: 4054 to 4293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 74/80(92%) | 0/80(0%) | Plus/Plus |
Query 2 VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ 241 VRG*CTP ER* DH* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+ Subject 4054 VRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR 4293
Lettuce mosaic virus isolate FR25, complete genome
Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 7
Range 1: 4055 to 4306 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 76/84(90%) | 0/84(0%) | Minus/Minus |
Query 3 VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA 254 V+ FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +NDL+NAL+AYIILA Subject 4055 VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA 4306
Range 2: 4055 to 4294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 77/80(96%) | 0/80(0%) | Plus/Plus |
Query 3 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK 242 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE 4294
Range 3: 4053 to 4292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 75/80(94%) | 0/80(0%) | Plus/Plus |
Query 1 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 240 RARMMYA RAL RSL LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP Subject 4053 RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 4292
Range 4: 4053 to 4289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 74/79(94%) | 0/79(0%) | Minus/Minus |
Query 1 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT 237 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ Q*S QRS GVHHPRT Subject 4053 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT 4289
Range 5: 4054 to 4293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 74/80(92%) | 0/80(0%) | Plus/Plus |
Query 2 VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ 241 VRG*CTP ER* DH* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+ Subject 4054 VRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR 4293
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 7
Range 1: 4055 to 4294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 77/80(96%) | 0/80(0%) | Plus/Plus |
Query 3 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK 242 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE 4294
Range 2: 4055 to 4306 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 74/84(88%) | 0/84(0%) | Minus/Minus |
Query 3 VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA 254 V+ FGCHARSCFTSERHEVPLCSVVCHRVASY LVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +ND +NAL+AYIILA Subject 4055 VMCYFGCHARSCFTSERHEVPLCSVVCHRVASY*LVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIILA 4306
Range 3: 4056 to 4292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 72/79(91%) | 0/79(0%) | Plus/Plus |
Query 4 ARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP 240 ARMMYA RAL +SL LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTN YEATRWHTTEQRGTS*RSLVKQLRAWQP Subject 4056 ARMMYATRALTKSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTN*YEATRWHTTEQRGTS*RSLVKQLRAWQP 4292
Range 4: 4056 to 4289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 71/78(91%) | 0/78(0%) | Minus/Minus |
Query 4 LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPR 237 LPRSQLFHE*TS*SAPLFCSVPSCCLV IGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ Q* QRS GVHHPR Subject 4056 LPRSQLFHE*TS*SAPLFCSVPSCCLVLIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPR 4289
Range 5: 4054 to 4293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 71/80(89%) | 0/80(0%) | Plus/Plus |
Query 2 VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ 241 +RG*CTP ER* +H* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPI TRQHDGTLQNRGALHDVHS*NSCERGS+ Subject 4054 MRG*CTPPER*RNH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPISTRQHDGTLQNRGALHDVHS*NSCERGSR 4293
Nucleotide Sequence (431 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
305.8 | 1598.4 | 25% | 2.022e-81 | 92% | AJ278854.1 | |
305.8 | 1656.6 | 25% | 2.022e-81 | 97% | X97704.2 | |
305.8 | 1578.7 | 25% | 2.022e-81 | 89% | KJ161173.1 | |
305.8 | 1564.5 | 25% | 2.022e-81 | 90% | KJ161175.1 | |
305.8 | 1520.5 | 25% | 2.022e-81 | 85% | KJ161176.1 |
Alignments
Lettuce mosaic virus (Isolate AF199) mRNA for polyprotein gene
Sequence ID: AJ278854.1 Length: 10080 Number of Matches: 7
Range 1: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 127/129(98%) | 0/129(0%) | Plus/Plus |
Query 43 VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 429 VW INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG Subject 7376 VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 7762
Range 2: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 120/129(93%) | 0/129(0%) | Minus/Minus |
Query 43 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN 429 SFFGFQKRVAI+DAHCYRCGVFHDVFCECFSVQAALLVGSHQWF+E LFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTC+PFVLFGLKLYCV E*VCH*FVYFEGF WGTID+IY PN Subject 7376 SFFGFQKRVAINDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFKEFLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCEPFVLFGLKLYCVPE*VCH*FVYFEGFPWGTIDEIYAPPN 7762
Range 3: 7378 to 7764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
275.5 bits(595) | 0.0 | 120/129(93%) | 0/129(0%) | Plus/Plus |
Query 45 LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS 431 LG HKS+Q*YPK TLQNKQISDR IR RSTVSIQTRRMV KSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKG+L TTDGSLPEEPLEQRSIHKRHHEILHTDNSGHR LRHVFESRRRS Subject 7378 LGGHKSHQ*YPKGTLQNKQISDRLIRGRSTVSIQTRRMVRKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGIL*TTDGSLPEEPLEQRSIHKRHHEILHTDNSGHR*LRHVFESRRRS 7764
Range 4: 7377 to 7763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.2 bits(579) | 0.0 | 120/129(93%) | 0/129(0%) | Plus/Plus |
Query 44 FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE 430 FG *I SIVPQ NPSK*TN**QTYS TQYSFNPNKTNG QVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKR+S NH*WEPTRRAA*TEKHSQKTS*NTPHR*QWAS IATRF*KPKKE Subject 7377 FGGA*ISSIVPQGNPSK*TN**QTYSGTQYSFNPNKTNGSQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRNSLNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASLIATRF*KPKKE 7763
Range 5: 7375 to 7761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.2 bits(566) | 0.0 | 125/129(97%) | 0/129(0%) | Minus/Minus |
Query 42 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT 428 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM QT Subject 7375 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT 7761
Range 6: 7377 to 7637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 80/87(92%) | 0/87(0%) | Minus/Minus |
Query 44 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK 304 VV*R PFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDL+TIRLVWIETVLR RI LSLICLF*RV LGYY**DL PK Subject 7377 VV*RIPFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLRTIRLVWIETVLRPRISLSLICLF*RVPLGYY**DLCPPK 7637
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 7
Range 1: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 127/129(98%) | 0/129(0%) | Plus/Plus |
Query 43 VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 429 VW INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG Subject 7376 VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 7762
Range 2: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
300.7 bits(650) | 0.0 | 126/129(98%) | 0/129(0%) | Minus/Minus |
Query 43 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN 429 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFEELLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTID+IY PN Subject 7376 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFEELLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDEIYAPPN 7762
Range 3: 7378 to 7764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
296.2 bits(640) | 0.0 | 126/129(98%) | 0/129(0%) | Plus/Plus |
Query 45 LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS 431 LG HKS+Q*YPKRTLQNKQISDR IRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS Subject 7378 LGGHKSHQ*YPKRTLQNKQISDRLIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS 7764
Range 4: 7377 to 7763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
284.2 bits(614) | 0.0 | 126/129(98%) | 0/129(0%) | Plus/Plus |
Query 44 FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE 430 FG *I SIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE Subject 7377 FGGA*ISSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE 7763
Range 5: 7375 to 7761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.2 bits(566) | 0.0 | 125/129(97%) | 0/129(0%) | Minus/Minus |
Query 42 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT 428 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM QT Subject 7375 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT 7761
Range 6: 7377 to 7637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 84/87(97%) | 0/87(0%) | Minus/Minus |
Query 44 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK 304 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLRLRI LSLICLF*RVLLGYY**DL PK Subject 7377 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLRLRISLSLICLF*RVLLGYY**DLCPPK 7637
Lettuce mosaic virus isolate 13, complete genome
Sequence ID: KJ161173.1 Length: 10080 Number of Matches: 7
Range 1: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 127/129(98%) | 0/129(0%) | Plus/Plus |
Query 43 VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 429 VW INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG Subject 7376 VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 7762
Range 2: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.7 bits(626) | 0.0 | 119/129(92%) | 0/129(0%) | Minus/Minus |
Query 43 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN 429 SFFGFQKRVAI+DAHCYRCGVFHDVFCECFSVQAALLVGSHQWF+E LFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTC+PFVLFGLKLYCV E*VCH*FVYFEGF WG ID+IY PN Subject 7376 SFFGFQKRVAINDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFKEFLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCEPFVLFGLKLYCVPE*VCH*FVYFEGFPWGAIDEIYAPPN 7762
Range 3: 7378 to 7764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 117/129(91%) | 0/129(0%) | Plus/Plus |
Query 45 LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS 431 LG HKS+Q*+PK TLQNKQISDR IR RSTVSIQTRRMV KSIERQLESSGEEHKPTRNKAHSQG*VHDV* IPANTRRGKG+L T DGSLPEEPLEQRSIHKRHHEILHTDNSGHR LRHVFESRRRS Subject 7378 LGGHKSHQ*HPKGTLQNKQISDRLIRGRSTVSIQTRRMVRKSIERQLESSGEEHKPTRNKAHSQG*VHDV*VIPANTRRGKGIL*TIDGSLPEEPLEQRSIHKRHHEILHTDNSGHR*LRHVFESRRRS 7764
Range 4: 7377 to 7763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 119/129(92%) | 0/129(0%) | Plus/Plus |
Query 44 FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE 430 FG *I SI PQ NPSK*TN**QTYS TQYSFNPNKTNG QVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKR+S NH*WEPTRRAA*TEKHSQKTS*NTPHR*QWAS IATRF*KPKKE Subject 7377 FGGA*ISSIAPQGNPSK*TN**QTYSGTQYSFNPNKTNGSQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRNSLNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASLIATRF*KPKKE 7763
Range 5: 7375 to 7761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.9 bits(563) | 0.0 | 123/129(95%) | 0/129(0%) | Minus/Minus |
Query 42 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT 428 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*API+GLKNSFSSSCVCRY+SNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM QT Subject 7375 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APINGLKNSFSSSCVCRYNSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT 7761
Range 6: 7377 to 7637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 77/87(89%) | 0/87(0%) | Minus/Minus |
Query 44 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK 304 +V*R PFPLRVFAGI QTSCTYP*LCALLRVGLCSSPLLSSCLSIDL+TIRLVWIETVLR RI LSLICLF*RV LG Y**DL PK Subject 7377 MV*RIPFPLRVFAGITQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLRTIRLVWIETVLRPRISLSLICLF*RVPLGCY**DLCPPK 7637
Lettuce mosaic virus isolate CL117, complete genome
Sequence ID: KJ161175.1 Length: 10080 Number of Matches: 7
Range 1: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 127/129(98%) | 0/129(0%) | Plus/Plus |
Query 43 VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 429 VW INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG Subject 7376 VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 7762
Range 2: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
286.5 bits(619) | 0.0 | 118/129(91%) | 0/129(0%) | Minus/Minus |
Query 43 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN 429 SFFGFQKRVAIDDAHCYRCGVFH+VFCECFSVQAALL+GSHQWFEE LF FVCLQV*LKHHALTL CVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCV E*VCH*FVY EGF WGTID+IY PN Subject 7376 SFFGFQKRVAIDDAHCYRCGVFHNVFCECFSVQAALLIGSHQWFEEFLFFFVCLQV*LKHHALTLYCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVPE*VCH*FVYLEGFPWGTIDEIYAPPN 7762
Range 3: 7378 to 7764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.4 bits(586) | 0.0 | 117/129(91%) | 0/129(0%) | Plus/Plus |
Query 45 LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS 431 LG HKS+Q*YPK TLQ+KQISDR IR RSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHS+G*VHDV*AIPANTRR KG+LQTTDGSL EEPLEQRSIHKRH+EILHTDNSGHRRLRHV ESRRRS Subject 7378 LGGHKSHQ*YPKGTLQDKQISDRLIRGRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSKG*VHDV*AIPANTRRRKGILQTTDGSLSEEPLEQRSIHKRHYEILHTDNSGHRRLRHVSESRRRS 7764
Range 4: 7377 to 7763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 118/129(91%) | 0/129(0%) | Plus/Plus |
Query 44 FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE 430 FG *I SIVPQ NPS+*TN**QTYS TQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQ RVSA*CLSYTCKHTK+KR+SSNH*WEP RRAA*TEKHSQKT *NTPHR*QWASSIATRF*KPKKE Subject 7377 FGGA*ISSIVPQGNPSR*TN**QTYSGTQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQ*RVSA*CLSYTCKHTKKKRNSSNH*WEPIRRAA*TEKHSQKTL*NTPHR*QWASSIATRF*KPKKE 7763
Range 5: 7375 to 7761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.3 bits(540) | 0.0 | 121/129(94%) | 0/129(0%) | Minus/Minus |
Query 42 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT 428 PSSAF+NVSQSTMPTVIGVEYF+MSFVNASLFKRLF *APISGLKNSFSSSCVCRYSSNIMHLP TVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM QT Subject 7375 PSSAFRNVSQSTMPTVIGVEYFIMSFVNASLFKRLF**APISGLKNSFSSSCVCRYSSNIMHLPFTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT 7761
Range 6: 7377 to 7637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 78/87(90%) | 0/87(0%) | Minus/Minus |
Query 44 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK 304 VV*R PF LRVFAGIAQTSCTYP LCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLR RI LSLICL *RV LGYY**DL PK Subject 7377 VV*RIPFLLRVFAGIAQTSCTYPLLCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLRPRISLSLICLS*RVPLGYY**DLCPPK 7637
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 7
Range 1: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 127/129(98%) | 0/129(0%) | Plus/Plus |
Query 43 VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 429 VW INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG Subject 7376 VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG 7762
Range 2: 7376 to 7762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 112/129(87%) | 0/129(0%) | Minus/Minus |
Query 43 SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN 429 SFFG QKRVAIDDAHCYRCGVFHDV CE FSVQAALLVGSHQWFEE LFLFVCLQV*LKHHAL L+CVLC+ELACALPHCFQVAFQLTC+PFVLFGLKL+CV +*VC+*FVYFE FSW TID+IY PN Subject 7376 SFFGLQKRVAIDDAHCYRCGVFHDVLCERFSVQAALLVGSHQWFEEFLFLFVCLQV*LKHHALALNCVLCHELACALPHCFQVAFQLTCEPFVLFGLKLHCVPK*VCY*FVYFERFSWSTIDEIYAPPN 7762
Range 3: 7375 to 7761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.2 bits(566) | 0.0 | 125/129(97%) | 0/129(0%) | Minus/Minus |
Query 42 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT 428 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM QT Subject 7375 PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT 7761
Range 4: 7378 to 7764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 112/129(87%) | 0/129(0%) | Plus/Plus |
Query 45 LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS 431 LG HKS+Q*Y KRT QNKQIS+R I RS VSIQTRRMV KSIERQLESSGEEHKPTR+KAHS G VHDV*AIPANTRRGKG+LQTTDGSLPEEPLEQRS+HK HHEILHTDNSGHRRLRHVFE RRRS Subject 7378 LGGHKSHQ*YSKRTFQNKQISNRLIWGRSAVSIQTRRMVRKSIERQLESSGEEHKPTRDKAHS*GQVHDV*AIPANTRRGKGILQTTDGSLPEEPLEQRSVHKGHHEILHTDNSGHRRLRHVFEGRRRS 7764
Range 5: 7377 to 7763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.9 bits(539) | 0.0 | 114/129(88%) | 0/129(0%) | Plus/Plus |
Query 44 FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE 430 FG *I SIV QEN SK*TN**QTY TQ SFNPNKTNG QVN*KAT*KQWGRAQANS*QSTQ R SA*CLSYTCKHTKRKR+SSNH*WEPTRRAA*TEK SQ+TS*NTPHR*QWASSIATRF*+PKKE Subject 7377 FGGA*ISSIVLQENLSK*TN**QTYLGTQCSFNPNKTNGSQVN*KAT*KQWGRAQANS*QSTQLRASA*CLSYTCKHTKRKRNSSNH*WEPTRRAA*TEKRSQRTS*NTPHR*QWASSIATRF*RPKKE 7763
Range 6: 7377 to 7637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 74/87(85%) | 0/87(0%) | Minus/Minus |
Query 44 VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK 304 VV*R PFPLRVFAGIAQTSCT P*LCAL RVGLCSSPLLSSCLSIDL+TIRLVWIET LR +I L LICLF*+VLL YY**DL PK Subject 7377 VV*RIPFPLRVFAGIAQTSCTCP*LCALSRVGLCSSPLLSSCLSIDLRTIRLVWIETALRPQISLLLICLF*KVLLEYY**DLCPPK 7637
Nucleotide Sequence (176 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
128.0 | 671.3 | 39% | 6.904e-29 | 87% | X97704.2 | |
128.0 | 658.9 | 39% | 6.904e-29 | 85% | KM016821.1 | |
128.0 | 585.1 | 28% | 6.904e-29 | 72% | KJ161174.1 | |
128.0 | 590.6 | 32% | 6.904e-29 | 74% | KJ161175.1 | |
128.0 | 630.5 | 39% | 6.904e-29 | 80% | KJ161176.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 51/54(94%) | 0/54(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT 163 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK HT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT 1492
Range 2: 1330 to 1470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 47/47(100%) | 0/47(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH 141 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH Subject 1330 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH 1470
Range 3: 1331 to 1468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 46/46(100%) | 0/46(0%) | Minus/Minus |
Query 2 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 139 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN Subject 1331 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 1468
Range 4: 1332 to 1469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 46/46(100%) | 0/46(0%) | Minus/Minus |
Query 3 CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 140 CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q Subject 1332 CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 1469
Range 5: 1332 to 1493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 47/54(87%) | 0/54(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP 164 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTT + + P Subject 1332 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIP 1493
Lettuce mosaic virus isolate Forte Lavras MG polyprotein gene, partial cds
Sequence ID: KM016821.1 Length: 2697 Number of Matches: 6
Range 1: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 51/54(94%) | 0/54(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT 163 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK HT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT 1492
Range 2: 1330 to 1470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 46/47(98%) | 0/47(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH 141 RC*G GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH Subject 1330 RC*GEGRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH 1470
Range 3: 1331 to 1468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 45/46(98%) | 0/46(0%) | Minus/Minus |
Query 2 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 139 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYP PNN Subject 1331 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPPPNN 1468
Range 4: 1332 to 1469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 45/46(98%) | 0/46(0%) | Minus/Minus |
Query 3 CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 140 CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLP P*Q Subject 1332 CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPSP*Q 1469
Range 5: 1332 to 1493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 46/54(85%) | 0/54(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP 164 LLG G*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTT + + P Subject 1332 LLGGG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIP 1493
Lettuce mosaic virus isolate Br6, complete genome
Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 51/54(94%) | 0/54(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT 163 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK HT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT 1492
Range 2: 1330 to 1491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 39/54(72%) | 0/54(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHSQRSQTH 162 RC*G GRW*S+R + GH LHH YGSIQRR TKLLERILNLFHAQHS+ H Subject 1330 RC*GEGRW*SHRLTEQGHALHHTSYGSIQRRCTKLLERILNLFHAQHSKGHTPH 1491
Range 3: 1360 to 1473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 37/38(97%) | 0/38(0%) | Minus/Minus |
Query 31 GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 144 GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCES+ Subject 1360 GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESM 1473
Range 4: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 40/54(74%) | 0/54(0%) | Minus/Minus |
Query 2 GVFGTFGSVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 163 GV SVVHETS*VSVPEVSC+VAVLNHT+ DGV DL L +Y+FTIYP PNN Subject 1331 GVEYVLWSVVHETS*VSVPEVSCNVAVLNHTMCDGVRDLAL*VYDFTIYPPPNN 1492
Range 5: 1332 to 1493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 39/54(72%) | 0/54(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP 164 LLG G*MVK * + RS TPS VWFNTAT HETSGTDTQLVSCTTL + +TP Subject 1332 LLGGG*MVKS*THRARSRTPSHIVWFNTATLHETSGTDTQLVSCTTLQRTYSTP 1493
Lettuce mosaic virus isolate CL117, complete genome
Sequence ID: KJ161175.1 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 51/54(94%) | 0/54(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT 163 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK HT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT 1492
Range 2: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 40/54(74%) | 0/54(0%) | Minus/Minus |
Query 2 GVFGTFGSVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 163 GV F VVHETS*+SVPEVSCD+ VLNHTV DGVCDL LRIY+FTIY P+N Subject 1331 GVEYVFWGVVHETS*ISVPEVSCDITVLNHTVCDGVCDLALRIYHFTIYSPPDN 1492
Range 3: 1330 to 1491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 40/54(74%) | 0/54(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHSQRSQTH 162 RC G RW*S RFAK GHTLHH PYGSIQ RTKLLERI NLFHAQH +R H Subject 1330 RCQGESRW*SDRFAKQGHTLHHTPYGSIQ*CRTKLLERIFNLFHAQHPKRHTPH 1491
Range 4: 1360 to 1473 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 38/38(100%) | 0/38(0%) | Minus/Minus |
Query 31 GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 144 GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI Subject 1360 GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI 1473
Range 5: 1332 to 1469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 38/46(83%) | 0/46(0%) | Minus/Minus |
Query 3 CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 140 CCA*NKL+IRSRSFVR CIEPYG *WSV*P FANL LHHL P*Q Subject 1332 CCA*NKLNIRSRSFVRHHCIEPYGV*WSV*PCFANLSLHHLLSP*Q 1469
Range 6: 1332 to 1493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 40/54(74%) | 0/54(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP 164 L G *MVK *IRK RSHTPS TVWFNT SHETSGTD QLVSCTT K +TP Subject 1332 LSGGE*MVK**IRKARSHTPSHTVWFNTVMSHETSGTDIQLVSCTTPQKTYSTP 1493
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6
Range 1: 1331 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 51/54(94%) | 0/54(0%) | Plus/Plus |
Query 2 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT 163 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK HT Subject 1331 VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT 1492
Range 2: 1331 to 1468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 42/46(91%) | 0/46(0%) | Minus/Minus |
Query 2 VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN 139 +VHETS*V VPEVSCDV VLNHTVRDGVCDLTLRIYNFTIYP PNN Subject 1331 IVHETS*VPVPEVSCDVTVLNHTVRDGVCDLTLRIYNFTIYPPPNN 1468
Range 3: 1330 to 1470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 43/47(91%) | 0/47(0%) | Plus/Plus |
Query 1 RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH 141 RC*G GRW*SYRFAK*GHTLHHAPYGSIQ RRTKLLER+LNLFHAQ+ Subject 1330 RC*GEGRW*SYRFAK*GHTLHHAPYGSIQ*RRTKLLERVLNLFHAQY 1470
Range 4: 1332 to 1466 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 42/45(93%) | 0/45(0%) | Minus/Minus |
Query 3 CA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q 137 CA*NKLS RSRSFVRR CIEPYGA*WSV*PYFANL*LHHLP P*Q Subject 1332 CA*NKLSTRSRSFVRRHCIEPYGA*WSV*PYFANL*LHHLPSP*Q 1466
Range 5: 1332 to 1493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 43/54(80%) | 0/54(0%) | Plus/Plus |
Query 3 LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP 164 LLG G*MVKL*IRKVRSHTPSRTVWFNT TSHETSGT TQLVSCT + + P Subject 1332 LLGGG*MVKL*IRKVRSHTPSRTVWFNTVTSHETSGTGTQLVSCTIPQRTYSIP 1493
Nucleotide Sequence (381 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
325.5 | 1661.9 | 25% | 1.942e-87 | 98% | X97705.1 | |
325.5 | 1661.9 | 25% | 1.942e-87 | 98% | NC_003605.1 | |
292.0 | 1400.7 | 26% | 2.278e-77 | 77% | KJ161187.1 | |
292.0 | 1434.6 | 26% | 2.278e-77 | 80% | KJ161190.1 | |
292.0 | 1434.6 | 26% | 2.278e-77 | 80% | KJ161191.1 |
Alignments
Lettuce mosaic virus (strain E) mRNA for polyprotein
Sequence ID: X97705.1 Length: 10080 Number of Matches: 6
Range 1: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.5 bits(704) | 0.0 | 125/126(99%) | 0/126(0%) | Minus/Minus |
Query 2 VGFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 379 V FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD Subject 5063 VRFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 5440
Range 2: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
302.1 bits(653) | 0.0 | 124/125(99%) | 0/125(0%) | Plus/Plus |
Query 1 HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI 375 HP***APNDPV KEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI Subject 5062 HP***APNDPVYKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI 5436
Range 3: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
294.8 bits(637) | 0.0 | 124/125(99%) | 0/125(0%) | Minus/Minus |
Query 1 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM 375 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFF YRIIRCSLSRM Subject 5062 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFVYRIIRCSLSRM 5436
Range 4: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN 379 ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+ Subject 5063 ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD 5440
Range 5: 5064 to 5441 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 3 SLIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSXXXXXXXXXXXXXXAS*DSSS*KNPT 380 SLIVSTE*SG+QRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KN T Subject 5064 SLIVSTE*SGIQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KNRT 5441
Range 6: 5064 to 5345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 93/94(99%) | 0/94(0%) | Minus/Minus |
Query 3 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQG 284 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSL+TGSFGAHYQG Subject 5064 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLYTGSFGAHYQG 5345
Lettuce mosaic virus, complete genome
Sequence ID: NC_003605.1 Length: 10080 Number of Matches: 6
Range 1: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.5 bits(704) | 0.0 | 125/126(99%) | 0/126(0%) | Minus/Minus |
Query 2 VGFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 379 V FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD Subject 5063 VRFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 5440
Range 2: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
302.1 bits(653) | 0.0 | 124/125(99%) | 0/125(0%) | Plus/Plus |
Query 1 HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI 375 HP***APNDPV KEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI Subject 5062 HP***APNDPVYKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI 5436
Range 3: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
294.8 bits(637) | 0.0 | 124/125(99%) | 0/125(0%) | Minus/Minus |
Query 1 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM 375 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFF YRIIRCSLSRM Subject 5062 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFVYRIIRCSLSRM 5436
Range 4: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN 379 ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+ Subject 5063 ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD 5440
Range 5: 5064 to 5441 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 3 SLIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSXXXXXXXXXXXXXXAS*DSSS*KNPT 380 SLIVSTE*SG+QRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KN T Subject 5064 SLIVSTE*SGIQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KNRT 5441
Range 6: 5064 to 5345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 93/94(99%) | 0/94(0%) | Minus/Minus |
Query 3 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQG 284 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSL+TGSFGAHYQG Subject 5064 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLYTGSFGAHYQG 5345
Lettuce mosaic virus isolate Ham6, complete genome
Sequence ID: KJ161187.1 Length: 10080 Number of Matches: 6
Range 1: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN 379 ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+ Subject 5063 ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD 5440
Range 2: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
290.2 bits(627) | 0.0 | 121/125(97%) | 0/125(0%) | Minus/Minus |
Query 1 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM 375 DSFNLNCL+RLLIAGCTVPSWCT+STIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPAL RPTLPTLWIRSPYVILFF YRIIRCSLSRM Subject 5062 DSFNLNCLKRLLIAGCTVPSWCTKSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALFRPTLPTLWIRSPYVILFFVYRIIRCSLSRM 5436
Range 3: 5063 to 5434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.0 bits(583) | 0.0 | 100/124(81%) | 0/124(0%) | Minus/Minus |
Query 2 FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 373 F QLELSQEAVNCWVYCTVVVYQV+HKE GQ KLLHRPCLSYC +A++ CTH+ACHDR+ VCETQ+G FCCD*CWYFFRPH SA Y +G TSFV+PNPSHSLDSL IC+TFLCIPDHSVL IK+ Subject 5063 FLQLELSQEAVNCWVYCTVVVYQVNHKEGGQFKLLHRPCLSYCAIAKHTCTHIACHDREPVCETQKGRFCCD*CWYFFRPHLSAPYSDGRTSFVSPNPSHSLDSLAICNTFLCIPDHSVLAIKN 5434
Range 4: 5062 to 5439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.1 bits(498) | 0.0 | 98/126(78%) | 0/126(0%) | Plus/Plus |
Query 1 HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERIQ 378 H ** APNDPV KEKY+IW ANPKSGKGWA+QSWF H +R+H*+GDGRNTSINRNRS L VFHIR CHDKQ EYK QL+SKT TDDAKV* VP LYG GTPRRYSTPSN*QP ETVQVE I+ Subject 5062 HS**RAPNDPVYKEKYYIWRANPKSGKGWAKQSWFCHPNREH*DGDGRNTSINRNRSGLFVFHIRAPCHDKQCEYKCAWQLHSKTSTDDAKV*TVPLLYG*LGTPRRYSTPSN*QPLETVQVEGIR 5439
Range 5: 5067 to 5360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 75/98(77%) | 0/98(0%) | Plus/Plus |
Query 6 LIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLW 299 LI STE*SG+QRKV HM SESKEWEGLG TKLV P * AL+WGRKKYQHQSQQK+P CVSHT LS*QA *VQ A Q*D+HGRCKSL+CP SLW Subject 5067 LIASTE*SGIQRKVLHMASESKEWEGLGETKLVLPSE*GALRWGRKKYQHQSQQKRPFCVSHTGSLS*QAM*VQVCLAIAQ*DKHGRCKSLNCPPSLW 5360
Range 6: 5067 to 5345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 72/93(77%) | 0/93(0%) | Minus/Minus |
Query 6 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQ 284 T QTFASSV VLL +C+ LYS CLS*Q RM*NT+R LLLRLMLVFLPSP QC L W NQLC AQPFPLFGFA HM*YFSL+TGSFGA YQ Subject 5067 TVQTFASSVLVLLCNCQAHLYSHCLS*QGARM*NTKRPLLLRLMLVFLPSPSQCSLFGWQNQLCFAQPFPLFGFARHM*YFSLYTGSFGARYQ 5345
Lettuce mosaic virus isolate Tn516, complete genome
Sequence ID: KJ161190.1 Length: 10080 Number of Matches: 6
Range 1: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN 379 ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+ Subject 5063 ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD 5440
Range 2: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
290.2 bits(627) | 0.0 | 121/125(97%) | 0/125(0%) | Minus/Minus |
Query 1 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM 375 DSFNLNCL+RLLIAGCTVPSWCT+STIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPAL RPTLPTLWIRSPYVILFF YRIIRCSLSRM Subject 5062 DSFNLNCLKRLLIAGCTVPSWCTKSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALFRPTLPTLWIRSPYVILFFVYRIIRCSLSRM 5436
Range 3: 5063 to 5434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
280.6 bits(606) | 0.0 | 103/124(83%) | 0/124(0%) | Minus/Minus |
Query 2 FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 373 F QLELSQE VNCWVYCTVVVYQV+HKE GQ KLLHRPCLSYC +A+Y C H+ACHDRKSVCETQ+GCFCCD*CWYFFRPH ASY +G TSFV+PNPSHSLDSL ICDTFLCIPDHSVL IK+ Subject 5063 FLQLELSQETVNCWVYCTVVVYQVNHKEGGQFKLLHRPCLSYCAIAKYTCAHIACHDRKSVCETQKGCFCCD*CWYFFRPHLGASYSDGRTSFVSPNPSHSLDSLAICDTFLCIPDHSVLAIKN 5434
Range 4: 5062 to 5439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.1 bits(509) | 0.0 | 101/126(80%) | 0/126(0%) | Plus/Plus |
Query 1 HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERIQ 378 H ** APNDPV KEKYHIW ANPKSGKGWA+QSWF H +RKH +GDGRNTSINRNRSSL VFHIRTSCHDKQ E+K T QL+SKT TDDAKV* VP LYG GTPRRYSTPSN*Q ETVQVE I+ Subject 5062 HS**RAPNDPVYKEKYHIWRANPKSGKGWAKQSWFCHPNRKHRDGDGRNTSINRNRSSLFVFHIRTSCHDKQCEHKCTWQLHSKTSTDDAKV*TVPLLYG*LGTPRRYSTPSN*QSLETVQVEGIR 5439
Range 5: 5067 to 5360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 79/98(81%) | 0/98(0%) | Plus/Plus |
Query 6 LIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLW 299 LI STE*SG+QRKVSHM SESKEWEGLG TKLV P *EA +WGRKKYQHQSQQKQP CVSHTDFLS*QA * Q Y A Q*D+HGRCKSL+CP SLW Subject 5067 LIASTE*SGIQRKVSHMASESKEWEGLGETKLVLPSE*EAPRWGRKKYQHQSQQKQPFCVSHTDFLS*QAM*AQVYLAIAQ*DKHGRCKSLNCPPSLW 5360
Range 6: 5067 to 5345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 75/93(81%) | 0/93(0%) | Minus/Minus |
Query 6 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQ 284 T QTFASSV VLL +C+V L S CLS*QEVRM*NT+RLLLLRLMLVFLPSP +CFL W NQLC AQPFPLFGFA HM*YFSL+TGSFGA YQ Subject 5067 TVQTFASSVLVLLCNCQVHLCSHCLS*QEVRM*NTKRLLLLRLMLVFLPSPSRCFLFGWQNQLCFAQPFPLFGFARHM*YFSLYTGSFGARYQ 5345
Lettuce mosaic virus isolate Tn516 ev, complete genome
Sequence ID: KJ161191.1 Length: 10080 Number of Matches: 6
Range 1: 5063 to 5440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 124/126(98%) | 0/126(0%) | Plus/Plus |
Query 2 ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN 379 ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+ Subject 5063 ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD 5440
Range 2: 5062 to 5436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
290.2 bits(627) | 0.0 | 121/125(97%) | 0/125(0%) | Minus/Minus |
Query 1 DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM 375 DSFNLNCL+RLLIAGCTVPSWCT+STIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPAL RPTLPTLWIRSPYVILFF YRIIRCSLSRM Subject 5062 DSFNLNCLKRLLIAGCTVPSWCTKSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALFRPTLPTLWIRSPYVILFFVYRIIRCSLSRM 5436
Range 3: 5063 to 5434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
280.6 bits(606) | 0.0 | 103/124(83%) | 0/124(0%) | Minus/Minus |
Query 2 FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD 373 F QLELSQE VNCWVYCTVVVYQV+HKE GQ KLLHRPCLSYC +A+Y C H+ACHDRKSVCETQ+GCFCCD*CWYFFRPH ASY +G TSFV+PNPSHSLDSL ICDTFLCIPDHSVL IK+ Subject 5063 FLQLELSQETVNCWVYCTVVVYQVNHKEGGQFKLLHRPCLSYCAIAKYTCAHIACHDRKSVCETQKGCFCCD*CWYFFRPHLGASYSDGRTSFVSPNPSHSLDSLAICDTFLCIPDHSVLAIKN 5434
Range 4: 5062 to 5439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.1 bits(509) | 0.0 | 101/126(80%) | 0/126(0%) | Plus/Plus |
Query 1 HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERIQ 378 H ** APNDPV KEKYHIW ANPKSGKGWA+QSWF H +RKH +GDGRNTSINRNRSSL VFHIRTSCHDKQ E+K T QL+SKT TDDAKV* VP LYG GTPRRYSTPSN*Q ETVQVE I+ Subject 5062 HS**RAPNDPVYKEKYHIWRANPKSGKGWAKQSWFCHPNRKHRDGDGRNTSINRNRSSLFVFHIRTSCHDKQCEHKCTWQLHSKTSTDDAKV*TVPLLYG*LGTPRRYSTPSN*QSLETVQVEGIR 5439
Range 5: 5067 to 5360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 79/98(81%) | 0/98(0%) | Plus/Plus |
Query 6 LIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLW 299 LI STE*SG+QRKVSHM SESKEWEGLG TKLV P *EA +WGRKKYQHQSQQKQP CVSHTDFLS*QA * Q Y A Q*D+HGRCKSL+CP SLW Subject 5067 LIASTE*SGIQRKVSHMASESKEWEGLGETKLVLPSE*EAPRWGRKKYQHQSQQKQPFCVSHTDFLS*QAM*AQVYLAIAQ*DKHGRCKSLNCPPSLW 5360
Range 6: 5067 to 5345 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 75/93(81%) | 0/93(0%) | Minus/Minus |
Query 6 TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQ 284 T QTFASSV VLL +C+V L S CLS*QEVRM*NT+RLLLLRLMLVFLPSP +CFL W NQLC AQPFPLFGFA HM*YFSL+TGSFGA YQ Subject 5067 TVQTFASSVLVLLCNCQVHLCSHCLS*QEVRM*NTKRLLLLRLMLVFLPSPSRCFLFGWQNQLCFAQPFPLFGFARHM*YFSLYTGSFGARYQ 5345
Nucleotide Sequence (203 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
156.2 | 787.6 | 32% | 3.986e-37 | 88% | AJ306288.1 | |
154.8 | 813.7 | 33% | 1.026e-36 | 93% | X97704.2 | |
154.8 | 715.7 | 32% | 1.026e-36 | 78% | KJ161174.1 | |
154.8 | 737.2 | 32% | 1.026e-36 | 81% | KJ161176.1 | |
154.8 | 698.2 | 33% | 1.026e-36 | 77% | KJ161178.1 |
Alignments
Lettuce mosaic virus complete genomic RNA, Yuhang isolate
Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.2 bits(337) | 0.0 | 65/67(97%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWW N Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWDN 4201
Range 2: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 61/67(91%) | 0/67(0%) | Minus/Plus |
Query 1 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST 201 EVI CTGVYQSSNH*YLRARMMYA RAL RSL LMRRKNL*ISRLKEKNFTLLAWWIRHSVSGG+T Subject 4002 EVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGTT 4202
Range 3: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 60/67(90%) | 0/67(0%) | Plus/Minus |
Query 2 VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS 202 V PPLTECRIHHARRVKFFSFNLEIYRFFLLIK +NDL++AL+AYIILARRY**FEL**TPVH ITS Subject 4001 VVPPLTECRIHHARRVKFFSFNLEIYRFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITS 4201
Range 4: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 59/67(88%) | 0/67(0%) | Plus/Minus |
Query 1 G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 201 G TTY*MSNPPREKSKVLFLQSRNL*ILSSHQ Q*S QRS GVHHPRT*ILMI*ALI+SCT NHF Subject 4002 GCPTTY*MSNPPREKSKVLFLQSRNL*ILSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHF 4202
Range 5: 4000 to 4200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 60/67(90%) | 0/67(0%) | Minus/Plus |
Query 3 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ 203 EK*L VQE IKAQIISIYVRG*CTP ER* DH* +**EERIYRFRD*RKRTLLFSRGGFDIQ*VV Q Subject 4000 EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERIYRFRD*RKRTLLFSRGGFDIQ*VVGQ 4200
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.8 bits(334) | 0.0 | 64/67(96%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN 4201
Range 2: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 63/67(94%) | 0/67(0%) | Minus/Plus |
Query 1 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST 201 EVIACTGVYQSSNH*YLRARMMYAIRAL RSL YLMRRK L*ISRLKEKNFTLLAWWIRHSVSGG+T Subject 4002 EVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTT 4202
Range 3: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 62/67(93%) | 0/67(0%) | Plus/Minus |
Query 2 VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS 202 V PPLTECRIHHARRVKFFSFNLEIY FFLLIK*+NDL++ALMAYIILARRY**FEL**TPVHAITS Subject 4001 VVPPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITS 4201
Range 4: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 62/67(93%) | 0/67(0%) | Plus/Minus |
Query 1 G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 201 G TTY*MSNPPREKSKVLFLQSRNL* LSSHQI Q*S QRSDGVHHPRT*ILMI*ALINSCTRNHF Subject 4002 GCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHF 4202
Range 5: 4000 to 4200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 63/67(94%) | 0/67(0%) | Minus/Plus |
Query 3 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ 203 EK*LRVQEFIKAQIISIYVRG*CTPSER* DH* I**EER YRFRD*RKRTLLFSRGGFDIQ*VV Q Subject 4000 EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQ 4200
Lettuce mosaic virus isolate Br6, complete genome
Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.8 bits(334) | 0.0 | 64/67(96%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN 4201
Range 2: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 55/67(82%) | 0/67(0%) | Plus/Minus |
Query 2 VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS 202 V PP ECRIHHARRVKFFSFNLEIYRFFLLI+ IN+LI+AL+AYI+LARRY**F+L**TP+H ITS Subject 4001 VVPPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIVLARRY**FKL**TPIHTITS 4201
Range 3: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 53/67(79%) | 0/67(0%) | Minus/Plus |
Query 1 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST 201 EVI C GVYQS NH*YLRAR MYA +ALMR LI MRRK *ISRLKEKNFTLLAWWIRHS +GG+T Subject 4002 EVIVCIGVYQSLNH*YLRARTMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGGTT 4202
Range 4: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 53/67(79%) | 0/67(0%) | Plus/Minus |
Query 1 G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 201 G T *MSNPPREKSKVLFLQSRNL LSSH+ DQ*SHQR GVH PRT*ILMI*ALI+S T NHF Subject 4002 GCPTIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHF 4202
Range 5: 4000 to 4200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 52/67(78%) | 0/67(0%) | Minus/Plus |
Query 3 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ 203 EK*L V E IKA IISIYVRG CTP +R**D+*S+ *EER RFRD*RKRTLLFSRGGFDIQ +V Q Subject 4000 EK*LCV*ESIKA*IISIYVRGRCTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMVGQ 4200
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.8 bits(334) | 0.0 | 64/67(96%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN 4201
Range 2: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 57/67(85%) | 0/67(0%) | Plus/Minus |
Query 2 VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS 202 V PP ECRIHHARRVKFFSFNLEIYRFFLLI+ IN+LI+AL+AYIILARRY**F+L**TPVH ITS Subject 4001 VVPPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIILARRY**FKL**TPVHTITS 4201
Range 3: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 55/67(82%) | 0/67(0%) | Minus/Plus |
Query 1 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST 201 EVI CTGVYQS NH*YLRARMMYA +ALMR LI MRRK *ISRLKEKNFTLLAWWIRHS +GG+T Subject 4002 EVIVCTGVYQSLNH*YLRARMMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGGTT 4202
Range 4: 4002 to 4202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 55/67(82%) | 0/67(0%) | Plus/Minus |
Query 1 G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 201 G T *MSNPPREKSKVLFLQSRNL LSSH+ DQ*SHQR GVHHPRT*ILMI*ALI+SCT NHF Subject 4002 GCPTIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHHPRT*ILMI*ALIDSCTHNHF 4202
Range 5: 4000 to 4200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 54/67(81%) | 0/67(0%) | Minus/Plus |
Query 3 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ 203 EK*L VQE IKA IISIYVRG*CTP +R**D+*S+ *EER RFRD*RKRTLLFSRGGFDIQ +V Q Subject 4000 EK*LCVQESIKA*IISIYVRG*CTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMVGQ 4200
Lettuce mosaic virus isolate CL281, complete genome
Sequence ID: KJ161178.1 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.8 bits(334) | 0.0 | 64/67(96%) | 0/67(0%) | Minus/Plus |
Query 2 RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN 202 RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN 4201
Range 2: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 53/65(82%) | 0/65(0%) | Plus/Minus |
Query 8 PPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS 202 PPL ECRIHHARRVKFFSFNLEIYRFFLLI+ +NDL++ L+A+IILARR **FEL**TPV+ ITS Subject 4001 PPLAECRIHHARRVKFFSFNLEIYRFFLLIEKVNDLVNTLVAHIILARRN**FEL**TPVYTITS 4195
Range 3: 4002 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 52/65(80%) | 0/65(0%) | Minus/Plus |
Query 7 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGG 201 EVI TGVYQSSNH*+LRARMM A R L RSL + MRRK *ISRLKEKNFTLLAWWIRHS SGG Subject 4002 EVIVYTGVYQSSNH*FLRARMMCATRVLTRSLTFSMRRKKR*ISRLKEKNFTLLAWWIRHSASGG 4196
Range 4: 4002 to 4193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 50/64(78%) | 0/64(0%) | Plus/Minus |
Query 10 TTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 201 TT *MSNPPREKSKVLFLQSRNL LSSH+ Q*S Q S G HHPRT* LMI*ALI+SC NHF Subject 4002 TTC*MSNPPREKSKVLFLQSRNLSFLSSHRKGQ*SRQHSGGAHHPRT*KLMI*ALIDSCIHNHF 4193
Range 5: 4000 to 4194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 50/65(77%) | 0/65(0%) | Minus/Plus |
Query 9 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VV 203 +K*L +QE IKAQIIS YVRG*C P E * DH* *EER RFRD*RKRTLLFSRGGFDIQ VV Subject 4000 KK*LCIQESIKAQIISFYVRG*CAPPEC*RDH*PFR*EERNDRFRD*RKRTLLFSRGGFDIQQVV 4194
Nucleotide Sequence (199 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
157.8 | 798.4 | 35% | 1.197e-37 | 92% | AJ515299.1 | |
157.8 | 771.4 | 35% | 1.197e-37 | 88% | KF955619.1 | |
157.8 | 789.7 | 35% | 1.197e-37 | 91% | KJ161179.1 | |
157.8 | 836.4 | 35% | 1.276e-37 | 98% | X97704.2 | |
157.8 | 715.0 | 35% | 1.276e-37 | 78% | KJ161174.1 |
Alignments
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 7
Range 1: 1143 to 1337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(339) | 0.0 | 65/65(100%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 1143 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 1337
Range 2: 1144 to 1338 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 61/65(94%) | 0/65(0%) | Minus/Plus |
Query 3 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 197 EVI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG Subject 1144 EVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 1338
Range 3: 1143 to 1337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 61/65(94%) | 0/65(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITS 198 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH ITS Subject 1143 PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITS 1337
Range 4: 1144 to 1335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 59/64(92%) | 0/64(0%) | Plus/Minus |
Query 6 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 197 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPRT*ILMI*ALI+SCT NHF Subject 1144 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHF 1335
Range 5: 1142 to 1336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 60/65(92%) | 0/65(0%) | Minus/Plus |
Query 5 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 199 EK*L VQE IKAQIISIYVRG*CTP ER* DH*P+**EERNYRFRD*RKRTLLFSRGGFDIQ*VV Subject 1142 EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 1336
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(339) | 0.0 | 65/65(100%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4005 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 58/64(91%) | 0/64(0%) | Minus/Plus |
Query 3 VIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 194 VI CTGVYQSSNH*YL ARMMYA RAL +SLT LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG Subject 4005 VIVCTGVYQSSNH*YLHARMMYATRALTKSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 4196
Range 3: 4004 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 58/64(91%) | 0/64(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAIT 195 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK VND +NAL+AYIILA RY**FEL**TPVH IT Subject 4004 PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIILACRY**FEL**TPVHTIT 4195
Range 4: 4005 to 4193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 56/63(89%) | 0/63(0%) | Plus/Minus |
Query 6 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH 194 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ GQ* QRS GVHHPR *ILMI*ALI+SCT NH Subject 4005 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPRM*ILMI*ALIDSCTHNH 4193
Range 5: 4000 to 4194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 57/65(88%) | 0/65(0%) | Minus/Plus |
Query 5 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 199 E+*L VQE IKAQIISIY+RG*CTP ER* +H*P+**EERNYRFRD*RKRTLLFSRGGFDIQ*VV Subject 4000 EE*LCVQESIKAQIISIYMRG*CTPPER*RNH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 4194
Lettuce mosaic virus isolate CL394, complete genome
Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(339) | 0.0 | 65/65(100%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4005 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 60/64(94%) | 0/64(0%) | Minus/Plus |
Query 3 VIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 194 VI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG Subject 4005 VIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 4196
Range 3: 4004 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 60/64(94%) | 0/64(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAIT 195 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH IT Subject 4004 PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTIT 4195
Range 4: 4005 to 4193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 58/63(92%) | 0/63(0%) | Plus/Minus |
Query 6 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH 194 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPRT*ILMI*ALI+SCT NH Subject 4005 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNH 4193
Range 5: 4000 to 4194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 59/65(91%) | 0/65(0%) | Minus/Plus |
Query 5 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 199 E+*L VQE IKAQIISIYVRG*CTP ER* DH*P+**EERNYRFRD*RKRTLLFSRGGFDIQ*VV Subject 4000 EE*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 4194
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(339) | 0.0 | 65/65(100%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4002 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 64/65(98%) | 0/65(0%) | Minus/Plus |
Query 3 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 197 EVIACTGVYQSSNH*YLRARMMYAIRAL RSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG Subject 4002 EVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 4196
Range 3: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 64/65(98%) | 0/65(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITS 198 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDL+NALMAYIILARRY**FEL**TPVHAITS Subject 4001 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITS 4195
Range 4: 4002 to 4193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 63/64(98%) | 0/64(0%) | Plus/Minus |
Query 6 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 197 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*S QRSDGVHHPRT*ILMI*ALINSCTRNHF Subject 4002 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHF 4193
Range 5: 4000 to 4194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 64/65(98%) | 0/65(0%) | Minus/Plus |
Query 5 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 199 EK*LRVQEFIKAQIISIYVRG*CTPSER* DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV Subject 4000 EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 4194
Lettuce mosaic virus isolate Br6, complete genome
Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 7
Range 1: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(339) | 0.0 | 65/65(100%) | 0/65(0%) | Minus/Plus |
Query 4 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 198 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4001 RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4001 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 53/65(82%) | 0/65(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITS 198 PP ECRIHHARRVKFFSFNLEIY FFLLI+ +N+LINAL+AYI+LARRY**F+L**TP+H ITS Subject 4001 PPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIVLARRY**FKL**TPIHTITS 4195
Range 3: 4002 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.7 bits(257) | 0.0 | 52/65(80%) | 0/65(0%) | Minus/Plus |
Query 3 EVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 197 EVI C GVYQS NH*YLRAR MYA +ALMR L MRRKK *ISRLKEKNFTLLAWWIRHS +GG Subject 4002 EVIVCIGVYQSLNH*YLRARTMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGG 4196
Range 4: 4002 to 4193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 52/64(81%) | 0/64(0%) | Plus/Minus |
Query 6 TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF 197 T *MSNPPREKSKVLFLQSRNL FLSSH+ Q*SHQR GVH PRT*ILMI*ALI+S T NHF Subject 4002 TIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHF 4193
Range 5: 4000 to 4194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 51/65(78%) | 0/65(0%) | Minus/Plus |
Query 5 EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV 199 EK*L V E IKA IISIYVRG CTP +R**D+* + *EERN RFRD*RKRTLLFSRGGFDIQ +V Subject 4000 EK*LCV*ESIKA*IISIYVRGRCTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMV 4194
Nucleotide Sequence (275 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
172.0 | 970.9 | 26% | 1.658e-41 | 99% | X97704.2 | |
166.9 | 946.2 | 26% | 5.456e-40 | 94% | KJ161186.1 | |
165.6 | 865.5 | 26% | 1.415e-39 | 86% | KJ161183.1 | |
165.6 | 865.5 | 26% | 1.415e-39 | 86% | KJ161184.1 | |
165.6 | 827.1 | 25% | 1.415e-39 | 80% | KJ161188.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 1214 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 70/71(99%) | 0/71(0%) | Plus/Minus |
Query 3 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAN 215 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA+ Subject 1214 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAS 1426
Range 2: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 69/70(99%) | 0/70(0%) | Minus/Plus |
Query 3 GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 212 G WHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA Subject 1217 GGWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 1426
Range 3: 1222 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 69/69(100%) | 0/69(0%) | Minus/Plus |
Query 1 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT 207 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT Subject 1222 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT 1428
Range 4: 1221 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 69/69(100%) | 0/69(0%) | Plus/Minus |
Query 2 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN 208 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN Subject 1221 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN 1427
Range 5: 1218 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 70/70(100%) | 0/70(0%) | Minus/Plus |
Query 2 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH 211 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH Subject 1218 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH 1427
Range 6: 1216 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 70/71(99%) | 0/71(0%) | Plus/Minus |
Query 1 RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP 213 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P Subject 1216 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP 1428
Lettuce mosaic virus isolate FR25, complete genome
Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6
Range 1: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 69/70(99%) | 0/70(0%) | Minus/Plus |
Query 3 GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 212 G WHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA Subject 1217 GGWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 1426
Range 2: 1214 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 67/71(94%) | 0/71(0%) | Plus/Minus |
Query 3 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAN 215 C+VAVLNHTVR+GVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*+CPCSVPTA+ Subject 1214 CNVAVLNHTVRNGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*ICPCSVPTAS 1426
Range 3: 1222 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 66/69(96%) | 0/69(0%) | Minus/Plus |
Query 1 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT 207 LAQNMDR RTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLH+APYGSIQRR T Subject 1222 LAQNMDRFRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHYAPYGSIQRRCT 1428
Range 4: 1221 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 67/69(97%) | 0/69(0%) | Plus/Minus |
Query 2 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN 208 V+RRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVL+LSMFCAN Subject 1221 VQRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLNLSMFCAN 1427
Range 5: 1218 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 67/70(96%) | 0/70(0%) | Minus/Plus |
Query 2 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH 211 AVGTEHGQ QNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTP RTVWFNTAT H Subject 1218 AVGTEHGQIQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPLRTVWFNTATLH 1427
Range 6: 1216 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 70/71(99%) | 0/71(0%) | Plus/Minus |
Query 1 RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP 213 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P Subject 1216 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP 1428
Lettuce mosaic virus isolate CL574, complete genome
Sequence ID: KJ161183.1 Length: 10080 Number of Matches: 6
Range 1: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 68/70(97%) | 0/70(0%) | Minus/Plus |
Query 3 GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 212 G WH+TWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA Subject 1217 GGWHKTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 1426
Range 2: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 60/70(86%) | 0/70(0%) | Plus/Minus |
Query 3 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA 212 CD+AVLNHTV DGVC+LTLRIYNFTIY P+NEYTVSP*T+FSYDF* VQ+VTA*SWG*F*VCPC VPTA Subject 1217 CDIAVLNHTVCDGVCNLTLRIYNFTIYSPPDNEYTVSP*TEFSYDF**VQHVTA*SWG*F*VCPCLVPTA 1426
Range 3: 1216 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 70/71(99%) | 0/71(0%) | Plus/Minus |
Query 1 RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP 213 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P Subject 1216 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP 1428
Range 4: 1222 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 59/69(86%) | 0/69(0%) | Minus/Plus |
Query 1 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT 207 LAQ+MDRLRTIPRIKRLR+EL+KNHRKI FKATQYIRC G RW*SYRFAK*G+TLHH PYGSIQR RT Subject 1222 LAQDMDRLRTIPRIKRLRVELIKNHRKIRFKATQYIRCQGESRW*SYRFAK*GYTLHHTPYGSIQRCRT 1428
Range 5: 1221 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 61/69(88%) | 0/69(0%) | Plus/Minus |
Query 2 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN 208 VR RCIEPYG *WSV*PYFANL*LHHL P*QRIYCVALN+IFL*FL SS RNRLILGIVLSLSM CAN Subject 1221 VRHRCIEPYGV*WSV*PYFANL*LHHLLSP*QRIYCVALNRIFL*FLMSSTRNRLILGIVLSLSMSCAN 1427
Range 6: 1218 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 60/70(86%) | 0/70(0%) | Minus/Plus |
Query 2 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH 211 AVGT HGQTQNYPQDQAVT *T QKS*EN V*GDTVYSL G *MVKL*IRKVR HTPS TVWFNTA SH Subject 1218 AVGTRHGQTQNYPQDQAVTC*THQKS*ENSV*GDTVYSLSGGE*MVKL*IRKVRLHTPSHTVWFNTAMSH 1427
Lettuce mosaic virus isolate CL574 ev, complete genome
Sequence ID: KJ161184.1 Length: 10080 Number of Matches: 6
Range 1: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 68/70(97%) | 0/70(0%) | Minus/Plus |
Query 3 GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 212 G WH+TWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA Subject 1217 GGWHKTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 1426
Range 2: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 60/70(86%) | 0/70(0%) | Plus/Minus |
Query 3 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA 212 CD+AVLNHTV DGVC+LTLRIYNFTIY P+NEYTVSP*T+FSYDF* VQ+VTA*SWG*F*VCPC VPTA Subject 1217 CDIAVLNHTVCDGVCNLTLRIYNFTIYSPPDNEYTVSP*TEFSYDF**VQHVTA*SWG*F*VCPCLVPTA 1426
Range 3: 1216 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 70/71(99%) | 0/71(0%) | Plus/Minus |
Query 1 RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP 213 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P Subject 1216 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP 1428
Range 4: 1222 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 59/69(86%) | 0/69(0%) | Minus/Plus |
Query 1 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT 207 LAQ+MDRLRTIPRIKRLR+EL+KNHRKI FKATQYIRC G RW*SYRFAK*G+TLHH PYGSIQR RT Subject 1222 LAQDMDRLRTIPRIKRLRVELIKNHRKIRFKATQYIRCQGESRW*SYRFAK*GYTLHHTPYGSIQRCRT 1428
Range 5: 1221 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 61/69(88%) | 0/69(0%) | Plus/Minus |
Query 2 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN 208 VR RCIEPYG *WSV*PYFANL*LHHL P*QRIYCVALN+IFL*FL SS RNRLILGIVLSLSM CAN Subject 1221 VRHRCIEPYGV*WSV*PYFANL*LHHLLSP*QRIYCVALNRIFL*FLMSSTRNRLILGIVLSLSMSCAN 1427
Range 6: 1218 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 60/70(86%) | 0/70(0%) | Minus/Plus |
Query 2 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH 211 AVGT HGQTQNYPQDQAVT *T QKS*EN V*GDTVYSL G *MVKL*IRKVR HTPS TVWFNTA SH Subject 1218 AVGTRHGQTQNYPQDQAVTC*THQKS*ENSV*GDTVYSLSGGE*MVKL*IRKVRLHTPSHTVWFNTAMSH 1427
Lettuce mosaic virus isolate Tn515, complete genome
Sequence ID: KJ161188.1 Length: 10080 Number of Matches: 6
Range 1: 1217 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 68/70(97%) | 0/70(0%) | Minus/Plus |
Query 3 GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 212 G WHRTWTDSELSPGSSGYVLNSSKI+GKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA Subject 1217 GGWHRTWTDSELSPGSSGYVLNSSKIMGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA 1426
Range 2: 1214 to 1426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 57/71(80%) | 0/71(0%) | Plus/Minus |
Query 3 CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAN 215 CDV VLNHT+RDGVCDLTLRIYNFT+Y PNN+YTVSP*TKFS++F*RV ++T *SWG F*VCPCSVPTA+ Subject 1214 CDVTVLNHTMRDGVCDLTLRIYNFTVYSPPNNKYTVSP*TKFSHNF*RV*HITT*SWGQF*VCPCSVPTAS 1426
Range 3: 1216 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 68/71(96%) | 0/71(0%) | Plus/Minus |
Query 1 RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP 213 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFP+IFDEFNT*PLDPGD+SESVHVLCQ P Subject 1216 RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPIIFDEFNT*PLDPGDNSESVHVLCQPP 1428
Range 4: 1218 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 58/70(83%) | 0/70(0%) | Minus/Plus |
Query 2 AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH 211 AVGTEHGQTQN PQDQ V *TRQK ENLV*GDTVY LLG * VKL*IRKVRSHTPSR VWFNT TSH Subject 1218 AVGTEHGQTQNCPQDQVVMC*TRQKLWENLV*GDTVYLLLGGE*TVKL*IRKVRSHTPSRIVWFNTVTSH 1427
Range 5: 1221 to 1427 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 56/69(81%) | 0/69(0%) | Plus/Minus |
Query 2 VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN 208 VRR CIEPY A*WSV*PYFANL*LH L P*Q+IYCVALNQIF *FLTS N LILG +LSLSMFCAN Subject 1221 VRRHCIEPYDA*WSV*PYFANL*LHRLLSP*QQIYCVALNQIFP*FLTSLTHNHLILGTILSLSMFCAN 1427
Range 6: 1222 to 1428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 55/69(80%) | 0/69(0%) | Minus/Plus |
Query 1 LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT 207 LAQNMDRLR +PRIK L ++LVKN+ KIWFKATQYI C*G R *SYRFAK*GHTLHHA YGSIQ RRT Subject 1222 LAQNMDRLRIVPRIKWLCVKLVKNYGKIWFKATQYICC*GESRR*SYRFAK*GHTLHHASYGSIQ*RRT 1428
Nucleotide Sequence (100 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
77.6 | 339.4 | 34% | 9.507e-14 | 91% | AJ515299.1 | |
77.6 | 358.2 | 33% | 9.507e-14 | 97% | X97704.2 | |
77.6 | 322.9 | 33% | 9.507e-14 | 84% | KF955619.1 | |
77.6 | 294.9 | 34% | 9.507e-14 | 75% | KJ161174.1 | |
77.6 | 304.1 | 34% | 9.507e-14 | 78% | KJ161176.1 |
Alignments
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 5
Range 1: 1197 to 1292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(165) | 0.0 | 31/32(97%) | 0/32(0%) | Minus/Plus |
Query 1 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD 96 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+ Subject 1197 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 1292
Range 2: 1195 to 1290 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 29/32(91%) | 0/32(0%) | Plus/Minus |
Query 3 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT 98 LFLQSRNL*FLSSHQ GQ*S QRS GVHHPRT Subject 1195 LFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT 1290
Range 3: 1194 to 1289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 29/32(91%) | 0/32(0%) | Plus/Minus |
Query 4 FSFNLEIYSFFLLIK*VNDLINALMAYIILAR 99 FSFNLEIYSFFLLIK VNDL+NAL+AYIILAR Subject 1194 FSFNLEIYSFFLLIKQVNDLVNALVAYIILAR 1289
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(165) | 0.0 | 31/32(97%) | 0/32(0%) | Minus/Plus |
Query 1 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD 96 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4053 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 31/32(97%) | 0/32(0%) | Plus/Minus |
Query 3 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT 98 LFLQSRNL*FLSSHQIGQ*S QRSDGVHHPRT Subject 4053 LFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT 4148
Range 3: 4052 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 31/32(97%) | 0/32(0%) | Plus/Minus |
Query 4 FSFNLEIYSFFLLIK*VNDLINALMAYIILAR 99 FSFNLEIYSFFLLIK*VNDL+NALMAYIILAR Subject 4052 FSFNLEIYSFFLLIK*VNDLVNALMAYIILAR 4147
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(165) | 0.0 | 31/32(97%) | 0/32(0%) | Minus/Plus |
Query 1 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD 96 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4055 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 27/31(87%) | 0/31(0%) | Plus/Minus |
Query 4 FSFNLEIYSFFLLIK*VNDLINALMAYIILA 96 FSFNLEIYSFFLLIK VND +NAL+AYIILA Subject 4055 FSFNLEIYSFFLLIKQVNDFVNALVAYIILA 4147
Range 3: 4056 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 27/31(87%) | 0/31(0%) | Plus/Minus |
Query 3 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPR 95 LFLQSRNL*FLSSHQ GQ* QRS GVHHPR Subject 4056 LFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPR 4148
Lettuce mosaic virus isolate Br6, complete genome
Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(165) | 0.0 | 31/32(97%) | 0/32(0%) | Minus/Plus |
Query 1 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD 96 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4052 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 25/32(78%) | 0/32(0%) | Plus/Minus |
Query 4 FSFNLEIYSFFLLIK*VNDLINALMAYIILAR 99 FSFNLEIY FFLLI+ +N+LINAL+AYI+LAR Subject 4052 FSFNLEIYRFFLLIEQINNLINALVAYIVLAR 4147
Range 3: 4053 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 25/32(78%) | 0/32(0%) | Plus/Minus |
Query 3 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT 98 LFLQSRNL FLSSH+ Q*SHQR GVH PRT Subject 4053 LFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT 4148
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(165) | 0.0 | 31/32(97%) | 0/32(0%) | Minus/Plus |
Query 1 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD 96 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+ Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE 4150
Range 2: 4053 to 4148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 26/32(81%) | 0/32(0%) | Plus/Minus |
Query 3 LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT 98 LFLQSRNL FLSSH+ Q*SHQR GVHHPRT Subject 4053 LFLQSRNLSFLSSHRTDQ*SHQRFGGVHHPRT 4148
Range 3: 4052 to 4147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 26/32(81%) | 0/32(0%) | Plus/Minus |
Query 4 FSFNLEIYSFFLLIK*VNDLINALMAYIILAR 99 FSFNLEIY FFLLI+ +N+LINAL+AYIILAR Subject 4052 FSFNLEIYRFFLLIEQINNLINALVAYIILAR 4147
Nucleotide Sequence (351 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
238.4 | 1281.1 | 27% | 2.741e-61 | 96% | AJ306288.1 | |
238.4 | 1281.1 | 27% | 2.741e-61 | 96% | X97704.2 | |
238.4 | 1281.1 | 27% | 2.741e-61 | 96% | KJ161179.1 | |
235.7 | 1263.3 | 27% | 1.843e-60 | 96% | KF955619.1 | |
222.4 | 1183.5 | 27% | 1.843e-56 | 87% | KJ161176.1 |
Alignments
Lettuce mosaic virus complete genomic RNA, Yuhang isolate
Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6
Range 1: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.4 bits(514) | 0.0 | 92/94(98%) | 0/94(0%) | Minus/Minus |
Query 70 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA 351 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP A Subject 6902 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA 7183
Range 2: 6912 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 90/90(100%) | 0/90(0%) | Plus/Plus |
Query 80 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 349 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL Subject 6912 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 7181
Range 3: 6901 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 91/94(97%) | 0/94(0%) | Plus/Plus |
Query 69 WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY 350 WR GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTSGQQLLVETLDHY Subject 6901 WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSGQQLLVETLDHY 7182
Range 4: 6919 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(452) | 0.0 | 87/88(99%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD Subject 6919 VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 7182
Range 5: 6903 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 90/93(97%) | 0/93(0%) | Minus/Minus |
Query 71 **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR 349 **SSVSTRSCCPLVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R Subject 6903 **SSVSTRSCCPLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR 7181
Range 6: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 90/94(96%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT Subject 6902 GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT 7183
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.4 bits(514) | 0.0 | 92/94(98%) | 0/94(0%) | Minus/Minus |
Query 70 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA 351 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP A Subject 6902 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA 7183
Range 2: 6912 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 90/90(100%) | 0/90(0%) | Plus/Plus |
Query 80 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 349 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL Subject 6912 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 7181
Range 3: 6901 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 91/94(97%) | 0/94(0%) | Plus/Plus |
Query 69 WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY 350 WR GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTSGQQLLVETLDHY Subject 6901 WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSGQQLLVETLDHY 7182
Range 4: 6919 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(452) | 0.0 | 87/88(99%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD Subject 6919 VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 7182
Range 5: 6903 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 90/93(97%) | 0/93(0%) | Minus/Minus |
Query 71 **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR 349 **SSVSTRSCCPLVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R Subject 6903 **SSVSTRSCCPLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR 7181
Range 6: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 90/94(96%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT Subject 6902 GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT 7183
Lettuce mosaic virus isolate CL394, complete genome
Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 6
Range 1: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.4 bits(514) | 0.0 | 92/94(98%) | 0/94(0%) | Minus/Minus |
Query 70 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA 351 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP A Subject 6902 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA 7183
Range 2: 6912 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 90/90(100%) | 0/90(0%) | Plus/Plus |
Query 80 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 349 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL Subject 6912 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 7181
Range 3: 6901 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 91/94(97%) | 0/94(0%) | Plus/Plus |
Query 69 WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY 350 WR GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTSGQQLLVETLDHY Subject 6901 WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSGQQLLVETLDHY 7182
Range 4: 6919 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(452) | 0.0 | 87/88(99%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD Subject 6919 VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 7182
Range 5: 6903 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 90/93(97%) | 0/93(0%) | Minus/Minus |
Query 71 **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR 349 **SSVSTRSCCPLVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R Subject 6903 **SSVSTRSCCPLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR 7181
Range 6: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 90/94(96%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT Subject 6902 GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT 7183
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6
Range 1: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.7 bits(508) | 0.0 | 91/94(97%) | 0/94(0%) | Minus/Minus |
Query 70 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA 351 CSDPVFPQEAVV+WCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP A Subject 6902 CSDPVFPQEAVVYWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA 7183
Range 2: 6901 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.2 bits(459) | 0.0 | 90/94(96%) | 0/94(0%) | Plus/Plus |
Query 69 WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY 350 WR GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTS QQLLVETLDHY Subject 6901 WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSRQQLLVETLDHY 7182
Range 3: 6912 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 89/90(99%) | 0/90(0%) | Plus/Plus |
Query 80 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 349 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQ TTASCGNTGSL Subject 6912 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQ*TTASCGNTGSL 7181
Range 4: 6919 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(452) | 0.0 | 87/88(99%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD Subject 6919 VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 7182
Range 5: 6903 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.2 bits(424) | 0.0 | 89/93(96%) | 0/93(0%) | Minus/Minus |
Query 71 **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR 349 **SSVSTRSCC LVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R Subject 6903 **SSVSTRSCCLLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR 7181
Range 6: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 90/94(96%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT Subject 6902 GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT 7183
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6
Range 1: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.4 bits(479) | 0.0 | 86/94(91%) | 0/94(0%) | Minus/Minus |
Query 70 CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA 351 CSDPVFPQEAVVH CCHARLR+GAGDALIL+*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSF RKYFELRC+ KHVFTMSRLNP A Subject 6902 CSDPVFPQEAVVHGCCHARLRHGAGDALILK*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFARKYFELRCVWKHVFTMSRLNPQHA 7183
Range 2: 6919 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 85/88(97%) | 0/88(0%) | Minus/Minus |
Query 87 VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 350 VVIQCFHKKLLSTGVVTLVSDTVL MLLS NKDPTRQIFSPLIGGRNFSFCG GGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD Subject 6919 VVIQCFHKKLLSTGVVTLVSDTVLVMLLS*NKDPTRQIFSPLIGGRNFSFCGKGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD 7182
Range 3: 6901 to 7182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 82/94(87%) | 0/94(0%) | Plus/Plus |
Query 69 WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY 350 WR GS+ETW*IRAS++NAAQSTSL RKGHNGYHSHTRLPS STKAEIPSTDQRREDLPRWILI *EH QHR+*DERDNT GQQLLVETLDHY Subject 6901 WRVEGSVETW*IRASKHNAAQSTSLRRKGHNGYHSHTRLPSFSTKAEIPSTDQRREDLPRWILISR*EHHQHRV*DERDNTRGQQLLVETLDHY 7182
Range 4: 6902 to 7183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 90/94(96%) | 0/94(0%) | Plus/Plus |
Query 70 GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT 351 G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT Subject 6902 GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT 7183
Range 5: 6912 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 81/90(90%) | 0/90(0%) | Plus/Plus |
Query 80 GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL 349 GF+RDMVNTCF+ QRSSKYFL KEGT*WLSFSHQTSL FHKS*NSVHRSKERRFASLDPY +IRASPAP LRRA*QH WTTASCGNTGSL Subject 6912 GFSRDMVNTCFQTQRSSKYFLAKEGT*WLSFSHQTSLLFHKS*NSVHRSKERRFASLDPYFKIRASPAPCLRRA*QHPWTTASCGNTGSL 7181
Range 6: 6903 to 7181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.5 bits(368) | 0.0 | 81/93(87%) | 0/93(0%) | Minus/Minus |
Query 71 **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR 349 **SSVSTRSCCP VLSRSSQ RCW CSY IRIQRGKSSLL*SVDGISAFVE EGSLV*E**PLCPFL KEVL*AAL EARIHHVS EP R Subject 6903 **SSVSTRSCCPRVLSRSSQTRCW*CSYLEIRIQRGKSSLL*SVDGISAFVEKEGSLV*E**PLCPFLRKEVL*AALCLEARIHHVSTEPSTR 7181
Nucleotide Sequence (117 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
81.2 | 432.9 | 30% | 7.827e-15 | 84% | AJ515299.1 | |
81.2 | 424.2 | 28% | 7.827e-15 | 82% | AJ306288.1 | |
81.2 | 452.6 | 28% | 7.827e-15 | 87% | X97704.2 | |
81.2 | 394.4 | 28% | 7.827e-15 | 74% | KF955619.1 | |
81.2 | 396.3 | 30% | 7.827e-15 | 74% | KJ161174.1 |
Alignments
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 6
Range 1: 1137 to 1238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.2 bits(171) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Plus |
Query 3 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 104 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII Subject 1137 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 1238
Range 2: 1136 to 1240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/35(94%) | 0/35(0%) | Plus/Minus |
Query 1 SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL 105 SMISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL Subject 1136 SMISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL 1240
Range 3: 1138 to 1239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 31/34(91%) | 0/34(0%) | Minus/Plus |
Query 2 VREVIACTGVYQSSNH*YLRARMMYAIRALMRSL 103 VREVI CTGVYQSSNH*YLRARMMYA RAL RSL Subject 1138 VREVIVCTGVYQSSNH*YLRARMMYATRALTRSL 1239
Range 4: 1125 to 1238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 32/38(84%) | 0/38(0%) | Plus/Minus |
Query 3 NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH 116 NDL+NAL+AYIILARRY**FEL**TPVH ITSLT+ H Subject 1125 NDLVNALVAYIILARRY**FEL**TPVHTITSLTVKHH 1238
Lettuce mosaic virus complete genomic RNA, Yuhang isolate
Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.2 bits(171) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Plus |
Query 3 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 104 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 4096
Range 2: 3994 to 4098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/35(94%) | 0/35(0%) | Plus/Minus |
Query 1 SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL 105 SMISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL Subject 3994 SMISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL 4098
Range 3: 3999 to 4097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 30/33(91%) | 0/33(0%) | Minus/Plus |
Query 2 REVIACTGVYQSSNH*YLRARMMYAIRALMRSL 100 REVI CTGVYQSSNH*YLRARMMYA RAL RSL Subject 3999 REVIVCTGVYQSSNH*YLRARMMYATRALTRSL 4097
Range 4: 3983 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 31/38(82%) | 0/38(0%) | Plus/Minus |
Query 3 NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH 116 NDL+NAL+AYIILARRY**FEL**TPVH ITSL + H Subject 3983 NDLVNALVAYIILARRY**FEL**TPVHTITSLAIKHH 4096
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.2 bits(171) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Plus |
Query 3 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 104 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 4096
Range 2: 3994 to 4098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 35/35(100%) | 0/35(0%) | Plus/Minus |
Query 1 SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL 105 SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL Subject 3994 SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL 4098
Range 3: 3999 to 4097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 32/33(97%) | 0/33(0%) | Plus/Minus |
Query 2 Q*SHQRSDGVHHPRT*ILMI*ALINSCTRNHFS 100 Q*S QRSDGVHHPRT*ILMI*ALINSCTRNHFS Subject 3999 Q*SRQRSDGVHHPRT*ILMI*ALINSCTRNHFS 4097
Range 4: 3999 to 4097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 32/33(97%) | 0/33(0%) | Minus/Plus |
Query 2 REVIACTGVYQSSNH*YLRARMMYAIRALMRSL 100 REVIACTGVYQSSNH*YLRARMMYAIRAL RSL Subject 3999 REVIACTGVYQSSNH*YLRARMMYAIRALTRSL 4097
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.2 bits(171) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Plus |
Query 3 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 104 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 4096
Range 2: 3994 to 4098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/35(94%) | 0/35(0%) | Plus/Minus |
Query 1 SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL 105 SMISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL Subject 3994 SMISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL 4098
Range 3: 3999 to 4097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 27/33(82%) | 0/33(0%) | Minus/Plus |
Query 2 REVIACTGVYQSSNH*YLRARMMYAIRALMRSL 100 R VI CTGVYQSSNH*YL ARMMYA RAL +SL Subject 3999 RGVIVCTGVYQSSNH*YLHARMMYATRALTKSL 4097
Range 4: 3983 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 28/38(74%) | 0/38(0%) | Plus/Minus |
Query 3 NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH 116 ND +NAL+AYIILA RY**FEL**TPVH IT L + H Subject 3983 NDFVNALVAYIILACRY**FEL**TPVHTITPLAVKHH 4096
Lettuce mosaic virus isolate Br6, complete genome
Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 6
Range 1: 3995 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.2 bits(171) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Plus |
Query 3 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 104 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII Subject 3995 SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII 4096
Range 2: 3994 to 4098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 32/35(91%) | 0/35(0%) | Plus/Minus |
Query 1 SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL 105 S+ISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL Subject 3994 SIISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL 4098
Range 3: 3983 to 4096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 29/38(76%) | 0/38(0%) | Plus/Minus |
Query 3 NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH 116 N+LINAL+AYI+LARRY**F+L**TP+H ITSLT+ H Subject 3983 NNLINALVAYIVLARRY**FKL**TPIHTITSLTVKHH 4096
Range 4: 3996 to 4097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 28/34(82%) | 0/34(0%) | Plus/Minus |
Query 2 Q*SHQRSDGVHHPRT*ILMI*ALINSCTRNHFSH 103 Q*SHQR GVH PRT*ILMI*ALI+S T NHFSH Subject 3996 Q*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHFSH 4097
Nucleotide Sequence (146 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
118.1 | 517.8 | 34% | 6.843e-26 | 91% | AJ515299.1 | |
118.1 | 536.6 | 34% | 6.843e-26 | 96% | X97704.2 | |
118.1 | 473.8 | 34% | 6.843e-26 | 81% | KJ161174.1 | |
118.1 | 482.9 | 34% | 6.843e-26 | 83% | KJ161176.1 | |
118.1 | 503.6 | 34% | 6.843e-26 | 87% | KF955619.1 |
Alignments
Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2
Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 5
Range 1: 1197 to 1337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.1 bits(252) | 0.0 | 47/47(100%) | 0/47(0%) | Minus/Plus |
Query 4 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 144 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 1197 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 1337
Range 2: 1197 to 1337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 43/47(91%) | 0/47(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA 144 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK +NDL+NAL+AYIILA Subject 1197 PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA 1337
Range 3: 1195 to 1338 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 44/48(92%) | 0/48(0%) | Minus/Plus |
Query 3 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 146 RARMMYA RAL RSL LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG Subject 1195 RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 1338
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.1 bits(252) | 0.0 | 47/47(100%) | 0/47(0%) | Minus/Plus |
Query 4 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 144 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 45/47(96%) | 0/47(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA 144 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*+NDL+NALMAYIILA Subject 4055 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILA 4195
Range 3: 4053 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 46/48(96%) | 0/48(0%) | Minus/Plus |
Query 3 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 146 RARMMYAIRAL RSL YLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG Subject 4053 RARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 4196
Lettuce mosaic virus isolate Br6, complete genome
Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.1 bits(252) | 0.0 | 47/47(100%) | 0/47(0%) | Minus/Plus |
Query 4 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 144 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 39/47(83%) | 0/47(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA 144 PP ECRIHHARRVKFFSFNLEIY FFLLI+ IN+LINAL+AYI+LA Subject 4055 PPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIVLA 4195
Range 3: 4053 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 39/48(81%) | 0/48(0%) | Minus/Plus |
Query 3 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 146 RAR MYA +ALMR LI MRRKK *ISRLKEKNFTLLAWWIRHS +GG Subject 4053 RARTMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGG 4196
Lettuce mosaic virus isolate CL208, complete genome
Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.1 bits(252) | 0.0 | 47/47(100%) | 0/47(0%) | Minus/Plus |
Query 4 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 144 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 40/47(85%) | 0/47(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA 144 PP ECRIHHARRVKFFSFNLEIY FFLLI+ IN+LINAL+AYIILA Subject 4055 PPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIILA 4195
Range 3: 4053 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 40/48(83%) | 0/48(0%) | Minus/Plus |
Query 3 RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 146 RARMMYA +ALMR LI MRRKK *ISRLKEKNFTLLAWWIRHS +GG Subject 4053 RARMMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGG 4196
Lettuce mosaic virus isolate Muju, complete genome
Sequence ID: KF955619.1 Length: 10080 Number of Matches: 5
Range 1: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.1 bits(252) | 0.0 | 47/47(100%) | 0/47(0%) | Minus/Plus |
Query 4 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 144 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW Subject 4055 CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW 4195
Range 2: 4055 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 42/47(89%) | 0/47(0%) | Plus/Minus |
Query 4 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA 144 PPLTECRIHHARRVKFFSFNLEIYSFFLLIK +ND +NAL+AYIILA Subject 4055 PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIILA 4195
Range 3: 4056 to 4196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 42/47(89%) | 0/47(0%) | Minus/Plus |
Query 3 ARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 143 ARMMYA RAL +SL LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG Subject 4056 ARMMYATRALTKSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG 4196
Nucleotide Sequence (399 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
192.1 | 1080.9 | 27% | 2.897e-47 | 87% | X97704.2 | |
188.9 | 1067.2 | 26% | 2.676e-46 | 85% | KJ161186.1 | |
188.0 | 993.8 | 26% | 5.051e-46 | 78% | KJ161177.1 | |
188.0 | 1003.5 | 20% | 5.051e-46 | 84% | KJ161180.1 | |
188.0 | 1003.5 | 20% | 5.051e-46 | 84% | KJ161181.1 |
Alignments
Lettuce mosaic virus (strain O) mRNA for polyprotein
Sequence ID: X97704.2 Length: 10080 Number of Matches: 6
Range 1: 2467 to 2733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 77/89(87%) | 0/89(0%) | Minus/Plus |
Query 67 FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPNTPNT 333 + RRPRG S*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIP+S+ + T Subject 2467 YACRRPRGSS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPYSESQHRDTT 2733
Range 2: 2474 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.6 bits(403) | 0.0 | 76/77(99%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH Subject 2474 VDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 2704
Range 3: 2477 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.4 bits(396) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Minus |
Query 96 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV 323 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSL+LWDV Subject 2477 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLILWDV 2704
Range 4: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 76/77(99%) | 0/77(0%) | Minus/Plus |
Query 92 TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 322 TSQR KLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF Subject 2478 TSQRIKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 2708
Range 5: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 75/77(97%) | 0/77(0%) | Plus/Minus |
Query 92 ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR 322 E GIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*L PLGR Subject 2478 EYGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LDPLGR 2708
Range 6: 2476 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Minus |
Query 97 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS 324 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS Subject 2476 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS 2703
Lettuce mosaic virus isolate FR25, complete genome
Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6
Range 1: 2467 to 2733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.9 bits(406) | 0.0 | 76/89(85%) | 0/89(0%) | Minus/Plus |
Query 67 FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPNTPNT 333 + RRPRG S*RFHEDGTRDS ETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIP+S+ + T Subject 2467 YACRRPRGSS*RFHEDGTRDSCETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPYSESQHRDAT 2733
Range 2: 2474 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.6 bits(403) | 0.0 | 76/77(99%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH Subject 2474 VDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 2704
Range 3: 2477 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 74/76(97%) | 0/76(0%) | Plus/Minus |
Query 96 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV 323 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFH YLACHLREIFSL+LWDV Subject 2477 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHSYLACHLREIFSLILWDV 2704
Range 4: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.5 bits(368) | 0.0 | 75/77(97%) | 0/77(0%) | Minus/Plus |
Query 92 TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 322 TSQR KLKISRRWHAR* *NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF Subject 2478 TSQRIKLKISRRWHAR*L*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 2708
Range 5: 2476 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Minus |
Query 97 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS 324 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS Subject 2476 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS 2703
Range 6: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 74/77(96%) | 0/77(0%) | Plus/Minus |
Query 92 ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR 322 E GIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVS LSRVPSS*NL*L PLGR Subject 2478 EYGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSQLSRVPSS*NL*LDPLGR 2708
Lettuce mosaic virus isolate CL246, complete genome
Sequence ID: KJ161177.1 Length: 10080 Number of Matches: 6
Range 1: 2474 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 76/77(99%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH Subject 2474 IDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 2704
Range 2: 2467 to 2733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 69/89(78%) | 0/89(0%) | Minus/Plus |
Query 67 FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPNTPNT 333 + RRPRG S RFHE+GTRDSSET GVALNDGC +GL*YISYISSRHPKI VT NLSRSRNENIPCN*LIWFNHDWIP+S+ + T Subject 2467 YAYRRPRGSSQRFHENGTRDSSETTWGVALNDGCSNGL*YISYISSRHPKIRVTPNLSRSRNENIPCN*LIWFNHDWIPYSESQHRDAT 2733
Range 3: 2476 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Minus |
Query 97 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS 324 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS Subject 2476 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS 2703
Range 4: 2477 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 68/76(89%) | 0/76(0%) | Plus/Minus |
Query 96 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV 323 MESSRD*TI*VNYMECFRCVID*DS *L SSGVWMKCS*YITSR +IHH*GPLP+LFHCYLACH REIF L+LWDV Subject 2477 MESSRD*TI*VNYMECFRCVID*DSG*L*SSGVWMKCS*YITSRCYIHH*GPLPKLFHCYLACHFREIFGLILWDV 2704
Range 5: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 68/77(88%) | 0/77(0%) | Minus/Plus |
Query 92 TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 322 TSQR K KISR+WHAR*Q*N+ GSGPQ*WM +RLVIY*LHFIQTPED+SY ES*SITQRKHSM*LTHMVQSRLDSIF Subject 2478 TSQRIKPKISRKWHAR*Q*NNLGSGPQ*WM*QRLVIY*LHFIQTPEDQSYPES*SITQRKHSM*LTHMVQSRLDSIF 2708
Range 6: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 67/77(87%) | 0/77(0%) | Plus/Minus |
Query 92 ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR 322 E GIQS*LNHMSQLHGMFSLRDRLRF VT IFGCLDEM*LIYYKP HPSLRATP+ VSLLSRVP S*NL L PLGR Subject 2478 EYGIQS*LNHMSQLHGMFSLRDRLRFGVTLIFGCLDEM*LIYYKPLLHPSLRATPQVVSLLSRVPFS*NLWLDPLGR 2708
Lettuce mosaic virus isolate CL427, complete genome
Sequence ID: KJ161180.1 Length: 10080 Number of Matches: 6
Range 1: 2474 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 76/77(99%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH Subject 2474 IDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 2704
Range 2: 2467 to 2712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.4 bits(372) | 0.0 | 69/82(84%) | 0/82(0%) | Minus/Plus |
Query 88 FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSK 333 + RRPRG S RFHE+GTRDSSET RGVALNDGC +GL*YISYISSRHPKI VT NLSRSRNENIPCN*LIWFNHDWIP+S+ Subject 2467 YAYRRPRGSSQRFHENGTRDSSETTRGVALNDGCSNGL*YISYISSRHPKIRVTPNLSRSRNENIPCN*LIWFNHDWIPYSE 2712
Range 3: 2476 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Minus |
Query 97 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS 324 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS Subject 2476 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS 2703
Range 4: 2477 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 69/76(91%) | 0/76(0%) | Plus/Minus |
Query 96 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV 323 MESSRD*TI*VNYMECFRCVID*DS *L SSGVWMKCS*YITSR +IHH*GPLPELFHCYLACH REIF L+LWDV Subject 2477 MESSRD*TI*VNYMECFRCVID*DSG*L*SSGVWMKCS*YITSRCYIHH*GPLPELFHCYLACHFREIFGLILWDV 2704
Range 5: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 69/77(90%) | 0/77(0%) | Minus/Plus |
Query 92 TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 322 TSQR K KISR+WHAR*Q*N+SGSGPQ*WM +RLVIY*LHFIQTPED+SY ES*SITQRKHSM*LTHMVQSRLDSIF Subject 2478 TSQRIKPKISRKWHAR*Q*NNSGSGPQ*WM*QRLVIY*LHFIQTPEDQSYPES*SITQRKHSM*LTHMVQSRLDSIF 2708
Range 6: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 68/77(88%) | 0/77(0%) | Plus/Minus |
Query 92 ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR 322 E GIQS*LNHMSQLHGMFSLRDRLRF VT IFGCLDEM*LIYYKP HPSLRATPR VSLLSRVP S*NL L PLGR Subject 2478 EYGIQS*LNHMSQLHGMFSLRDRLRFGVTLIFGCLDEM*LIYYKPLLHPSLRATPRVVSLLSRVPFS*NLWLDPLGR 2708
Lettuce mosaic virus isolate CL427 ev, complete genome
Sequence ID: KJ161181.1 Length: 10080 Number of Matches: 6
Range 1: 2474 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 76/77(99%) | 0/77(0%) | Minus/Plus |
Query 96 LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 326 +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH Subject 2474 IDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH 2704
Range 2: 2467 to 2712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.4 bits(372) | 0.0 | 69/82(84%) | 0/82(0%) | Minus/Plus |
Query 88 FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSK 333 + RRPRG S RFHE+GTRDSSET RGVALNDGC +GL*YISYISSRHPKI VT NLSRSRNENIPCN*LIWFNHDWIP+S+ Subject 2467 YAYRRPRGSSQRFHENGTRDSSETTRGVALNDGCSNGL*YISYISSRHPKIRVTPNLSRSRNENIPCN*LIWFNHDWIPYSE 2712
Range 3: 2476 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Minus |
Query 97 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS 324 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS Subject 2476 WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS 2703
Range 4: 2477 to 2704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 69/76(91%) | 0/76(0%) | Plus/Minus |
Query 96 MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV 323 MESSRD*TI*VNYMECFRCVID*DS *L SSGVWMKCS*YITSR +IHH*GPLPELFHCYLACH REIF L+LWDV Subject 2477 MESSRD*TI*VNYMECFRCVID*DSG*L*SSGVWMKCS*YITSRCYIHH*GPLPELFHCYLACHFREIFGLILWDV 2704
Range 5: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 69/77(90%) | 0/77(0%) | Minus/Plus |
Query 92 TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF 322 TSQR K KISR+WHAR*Q*N+SGSGPQ*WM +RLVIY*LHFIQTPED+SY ES*SITQRKHSM*LTHMVQSRLDSIF Subject 2478 TSQRIKPKISRKWHAR*Q*NNSGSGPQ*WM*QRLVIY*LHFIQTPEDQSYPES*SITQRKHSM*LTHMVQSRLDSIF 2708
Range 6: 2478 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 68/77(88%) | 0/77(0%) | Plus/Minus |
Query 92 ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR 322 E GIQS*LNHMSQLHGMFSLRDRLRF VT IFGCLDEM*LIYYKP HPSLRATPR VSLLSRVP S*NL L PLGR Subject 2478 EYGIQS*LNHMSQLHGMFSLRDRLRFGVTLIFGCLDEM*LIYYKPLLHPSLRATPRVVSLLSRVPFS*NLWLDPLGR 2708