Queries
Nucleotide Sequence (122 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
98.7 | 271.8 | 41% | 4.26e-20 | 58% | KY513701.1 | |
98.7 | 271.8 | 41% | 4.26e-20 | 58% | NC_034205.1 | |
96.8 | 278.6 | 38% | 1.518e-19 | 57% | KY513702.1 | |
95.5 | 279.0 | 39% | 3.935e-19 | 59% | KX828705.1 | |
92.7 | 334.2 | 34% | 2.646e-18 | 60% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 4
Range 1: 5625 to 5744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 40/40(100%) | 0/40(0%) | Minus/Plus |
Query 3 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF 122 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF Subject 5625 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF 5744
Range 2: 5627 to 5746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 35/40(88%) | 0/40(0%) | Plus/Minus |
Query 1 SKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMV 120 SKTADW GTES+GSRFQKASPRE PMENSVA*E SFSS+V Subject 5627 SKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIV 5746
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 4
Range 1: 5625 to 5744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 40/40(100%) | 0/40(0%) | Minus/Plus |
Query 3 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF 122 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF Subject 5625 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF 5744
Range 2: 5627 to 5746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 35/40(88%) | 0/40(0%) | Plus/Minus |
Query 1 SKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMV 120 SKTADW GTES+GSRFQKASPRE PMENSVA*E SFSS+V Subject 5627 SKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIV 5746
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 4
Range 1: 5626 to 5745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 39/40(98%) | 0/40(0%) | Minus/Plus |
Query 3 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF 122 GTIDEKLLSYATEFSIGHSLGDAFWNLLPI+SVPYQSAVF Subject 5626 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVF 5745
Range 2: 5628 to 5747 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 34/40(85%) | 0/40(0%) | Plus/Minus |
Query 1 SKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMV 120 SKTAD *GT+S+GSRFQKASPRE*P+ENSVA E SFSSMV Subject 5628 SKTAD**GTDSMGSRFQKASPRE*PIENSVAYESSFSSMV 5747
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 4
Range 1: 5567 to 5686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 38/40(95%) | 0/40(0%) | Minus/Plus |
Query 3 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF 122 GTIDEKLLSYATEFSIGHSLGD+FWNLLPI+SVPYQSAVF Subject 5567 GTIDEKLLSYATEFSIGHSLGDSFWNLLPIESVPYQSAVF 5686
Range 2: 5569 to 5688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 34/40(85%) | 0/40(0%) | Plus/Minus |
Query 1 SKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMV 120 SKTAD GT+SIGS+FQK SPRE*P+ENSVA*ERSFSSMV Subject 5569 SKTAD*YGTDSIGSKFQKESPRE*PIENSVA*ERSFSSMV 5688
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 5
Range 1: 678 to 797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 35/40(88%) | 0/40(0%) | Minus/Plus |
Query 3 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVF 122 GTIDEK++SYATEFSIGHSLGDAFWNLLP+++VPYQSAVF Subject 678 GTIDEKMISYATEFSIGHSLGDAFWNLLPLEAVPYQSAVF 797
Range 2: 680 to 799 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 34/40(85%) | 0/40(0%) | Plus/Minus |
Query 1 SKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMV 120 SKTADW*GT S G RFQKASPRE PMENSVA*E FSSMV Subject 680 SKTADW*GTASRGRRFQKASPRECPMENSVA*EIIFSSMV 799
Range 3: 680 to 799 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 26/40(65%) | 0/40(0%) | Minus/Plus |
Query 1 HH**EASFLCH*ILHRSLPWRRLLESASDRLCPLPVRRFR 120 HH**+ FLCH ILHR+LPWR LLE S C LPV FR Subject 680 HH**KNDFLCHRILHRALPWRCLLEPPSS*GCALPVSGFR 799
Nucleotide Sequence (373 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
299.8 | 1088.1 | 30% | 9.866e-80 | 54% | KY513701.1 | |
299.8 | 1007.4 | 32% | 9.866e-80 | 46% | KY513702.1 | |
299.8 | 1088.1 | 30% | 9.866e-80 | 54% | NC_034205.1 | |
292.0 | 1033.4 | 28% | 2.215e-77 | 51% | KX828705.1 | |
289.3 | 952.6 | 18% | 1.468e-76 | 46% | AY706994.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 8
Range 1: 1023 to 1394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
299.8 bits(648) | 0.0 | 119/124(96%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 ARDITRYPEVST+PPECSTWF HDSIMYLSAE VAGCFQ CPHLERLYASLVVPPES+FTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH Subject 1023 ARDITRYPEVSTTPPECSTWFMHDSIMYLSAEEVAGCFQACPHLERLYASLVVPPESAFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 1394
Range 2: 1025 to 1390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.8 bits(528) | 0.0 | 102/122(84%) | 0/122(0%) | Plus/Minus |
Query 6 TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMSR 371 TGPQLS+RVMAR MS PWMLLVCSHF ADLGCW*L +GFSSRR*MSWSP R*R*REGAK+RSVK DSGGTT EA +RSRWG WKHPAT SA+RYMMESC+N VLHSGG VETSG*RVMSR Subject 1025 TGPQLSRRVMARKMSFPWMLLVCSHFSADLGCW*LWEGFSSRR*MSWSPWKR*R*REGAKERSVKADSGGTTREA*RRSRWGHAWKHPATSSAERYMMESCMNHVLHSGGVVETSG*RVMSR 1390
Range 3: 1026 to 1394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 70/123(57%) | 0/123(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMREPSAAFRR*GRDFWVASDVA 370 V+ TP Q DG + VI LDAVGLQPLQ RLGLLV V +LF+A++ELVA++++AVK GEG++SE ++RSV+AL++GT LEA S+ R+VHDGV+ EP AA R G DF VA DVA Subject 1026 VDRTPALQTCDGQEDVIPLDAVGLQPLQRRLGLLVAVGGVLFQAVNELVAVEAVAVKGRGEGEVSEGRFGGHNERSVEALEVGTRLEAPSNFFSREVHDGVVHEPRAALRGCGGDFGVAGDVA 1394
Range 4: 1027 to 1395 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 66/123(54%) | 0/123(0%) | Plus/Minus |
Query 1 CERDPNFPSE*WLEICHCPGCCWFAATSEQTWAAGNCAMDSLQGDR*AGRHEIDSGKERGRRTDQ*KRTQEGRPAKRTSAQDGDKSGSIQPLPLPTGT*WSHA*TKCCIQEVR*RLLGSE*CR 369 C +DP+ P *W CH GCCW AATS QTWAAG+C SL G +*AGR SGK +GRR Q*++ + + KR A+ GD GS Q L GT*WS A*T CC Q V RL GS *CR Subject 1027 CGQDPSSPDV*WPGRCHSLGCCWSAATSAQTWAAGSCGRGSLPGGK*AGRRGSGSGKGKGRRRGQ*RQIRGAQREKRRGARGGDTPGSTQQLLQQRGT*WSRA*TTCCTQGVWWRLRGSG*CR 1395
Range 5: 1247 to 1387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 32/47(68%) | 0/47(0%) | Minus/Plus |
Query 9 RPAHLSP*RESIAQLPAAQVCSEVAANQQHPGQ*HISSHHSLGKLGS 149 RPAHL P RE + QLPAAQVC+EVAA+QQHP +*H+ HH+ G+LGS Subject 1247 RPAHLPPGREPLPQLPAAQVCAEVAADQQHPRE*HLPGHHTSGELGS 1387
Range 6: 1027 to 1170 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 29/48(60%) | 0/48(0%) | Minus/Plus |
Query 226 ATSLATQKSLPHLLNAALGSRMTPSCTCRQREWLDASRLVPILSACTL 369 ATS AT KS PH L+AA GS TPSCT ++ L ASR VP SA TL Subject 1027 ATSPATPKSPPHPLSAARGSCTTPSCTSLLKKLLGASRRVPTSSASTL 1170
Range 7: 1225 to 1386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 32/54(59%) | 0/54(0%) | Minus/Plus |
Query 10 FTAIDFMATSSSIALKRIHRTVTSSPSLL*SGCKPTASRAMTYF*PSLAWKVGV 171 FTA ATSS A KR T TSSPSL *SGC+PTAS+ MT PS W+ GV Subject 1225 FTATASTATSSFTAWKRTPPTATSSPSLR*SGCRPTASKGMTSSWPSHVWRAGV 1386
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 8
Range 1: 1024 to 1395 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
299.8 bits(648) | 0.0 | 119/124(96%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 ARDITRYPEVST+PPECSTWF HDSIMYLSAE VAGCFQ CPHLERLYASLVVPPES+FTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH Subject 1024 ARDITRYPEVSTTPPECSTWFMHDSIMYLSAEEVAGCFQACPHLERLYASLVVPPESAFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 1395
Range 2: 1026 to 1391 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.7 bits(508) | 0.0 | 102/122(84%) | 0/122(0%) | Plus/Minus |
Query 6 TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMSR 371 TGPQLSKRV+AR MSLP MLLVCSHFRADLGCW*L +GFSSRR*MSWSP R*R* EGAK+RSVK DSGGTT EA +RSR GQ WKHPAT SA+RYMMESC+NQVLHSGG V+TSG*RVMSR Subject 1026 TGPQLSKRVIARKMSLP*MLLVCSHFRADLGCW*LWEGFSSRR*MSWSPWKR*R*SEGAKERSVKADSGGTTREA*RRSR*GQAWKHPATSSAERYMMESCMNQVLHSGGVVDTSG*RVMSR 1391
Range 3: 1031 to 1387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 62/119(52%) | 0/119(0%) | Plus/Minus |
Query 10 DPNFPSE*WLEICHCPGCCWFAATSEQTWAAGNCAMDSLQGDR*AGRHEIDSGKERGRRTDQ*KRTQEGRPAKRTSAQDGDKSGSIQPLPLPTGT*WSHA*TKCCIQEVR*RLLGSE*C 366 DP+ P+E* CHCP CCWF ATSE WAAGNC S +GDR*AGR SG+ +GRR +*+ T E R +R Q D+ GS + P GT*WS A*TKCC Q LL + *C Subject 1031 DPSSPNE*SPGRCHCPECCWFVATSELIWAAGNCGRGSPRGDR*AGRRGSGSGRVKGRRRGR*RLTLEARQGRRRDVQGEDRLGSTRQPLQPRGT*WSRA*TKCCTQGGLWTLLDNG*C 1387
Range 4: 1030 to 1386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 62/119(52%) | 0/119(0%) | Plus/Minus |
Query 11 TPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMREPSAAFRR*GRDFWVASDV 367 TP Q SD + VIAL+AVGL PLQS GLLVTV +L +AIDELVA++++AV+ GEG++ E L R D+ V+ K+ T LEA + R+VHDGV+ EPSAA R FW+ DV Subject 1030 TPALQTSDRQEDVIALNAVGL*PLQS*FGLLVTVGGVLLEAIDELVAVEAVAVE*RGEGEVGEG*LWRHDKGGVETFKVRTGLEAPGNLFSREVHDGVVHEPSAALRGGCGHFWITGDV 1386
Range 5: 1248 to 1388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 32/47(68%) | 0/47(0%) | Minus/Plus |
Query 9 RPAHLSP*RESIAQLPAAQVCSEVAANQQHPGQ*HISSHHSLGKLGS 149 RPAHLSP E + QLPAAQ+ SEVA NQQH GQ*H+ HS G+LGS Subject 1248 RPAHLSPRGEPLPQLPAAQISSEVATNQQHSGQ*HLPGDHSFGELGS 1388
Range 6: 1031 to 1168 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 21/46(46%) | 0/46(0%) | Minus/Plus |
Query 229 TSLATQKSLPHLLNAALGSRMTPSCTCRQREWLDASRLVPILSACT 366 TS QK L+AALGS TPSCT R + AS+ V L+ T Subject 1031 TSPVIQKCPQPPLSAALGSCTTPSCTSRLKRLPGASKPVLTLNVST 1168
Range 7: 1229 to 1387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 33/53(62%) | 0/53(0%) | Minus/Plus |
Query 10 TAIDFMATSSSIALKRIHRTVTSSPSLL*SGCKPTASRAMTYF*PSLAWKVGV 168 TA ATSSSIA +R TVTSSP+ L*SG KPTA RAMT SL W+ GV Subject 1229 TATASTATSSSIASRRTPPTVTSSPNQL*SGYKPTAFRAMTSSWRSLVWRAGV 1387
Range 8: 1032 to 1202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 28/57(49%) | 0/57(0%) | Minus/Plus |
Query 195 HHSLPRSLYLTS*MQXXXXXXXXXVPVGRGSGWMLPDLSPS*ALVRFAGRPS*VLFH 365 HH L RS++ *+QHLVHA LHHVP+G +LP LS * +R R S V H Subject 1032 HHPLSRSVHNPP*VQHLVHARLHHVPLG*RGCRVLPSLSSP*TSLRLPCRASRVSLH 1202
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 8
Range 1: 1023 to 1394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
299.8 bits(648) | 0.0 | 119/124(96%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 ARDITRYPEVST+PPECSTWF HDSIMYLSAE VAGCFQ CPHLERLYASLVVPPES+FTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH Subject 1023 ARDITRYPEVSTTPPECSTWFMHDSIMYLSAEEVAGCFQACPHLERLYASLVVPPESAFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 1394
Range 2: 1025 to 1390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.8 bits(528) | 0.0 | 102/122(84%) | 0/122(0%) | Plus/Minus |
Query 6 TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMSR 371 TGPQLS+RVMAR MS PWMLLVCSHF ADLGCW*L +GFSSRR*MSWSP R*R*REGAK+RSVK DSGGTT EA +RSRWG WKHPAT SA+RYMMESC+N VLHSGG VETSG*RVMSR Subject 1025 TGPQLSRRVMARKMSFPWMLLVCSHFSADLGCW*LWEGFSSRR*MSWSPWKR*R*REGAKERSVKADSGGTTREA*RRSRWGHAWKHPATSSAERYMMESCMNHVLHSGGVVETSG*RVMSR 1390
Range 3: 1026 to 1394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 70/123(57%) | 0/123(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMREPSAAFRR*GRDFWVASDVA 370 V+ TP Q DG + VI LDAVGLQPLQ RLGLLV V +LF+A++ELVA++++AVK GEG++SE ++RSV+AL++GT LEA S+ R+VHDGV+ EP AA R G DF VA DVA Subject 1026 VDRTPALQTCDGQEDVIPLDAVGLQPLQRRLGLLVAVGGVLFQAVNELVAVEAVAVKGRGEGEVSEGRFGGHNERSVEALEVGTRLEAPSNFFSREVHDGVVHEPRAALRGCGGDFGVAGDVA 1394
Range 4: 1027 to 1395 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 66/123(54%) | 0/123(0%) | Plus/Minus |
Query 1 CERDPNFPSE*WLEICHCPGCCWFAATSEQTWAAGNCAMDSLQGDR*AGRHEIDSGKERGRRTDQ*KRTQEGRPAKRTSAQDGDKSGSIQPLPLPTGT*WSHA*TKCCIQEVR*RLLGSE*CR 369 C +DP+ P *W CH GCCW AATS QTWAAG+C SL G +*AGR SGK +GRR Q*++ + + KR A+ GD GS Q L GT*WS A*T CC Q V RL GS *CR Subject 1027 CGQDPSSPDV*WPGRCHSLGCCWSAATSAQTWAAGSCGRGSLPGGK*AGRRGSGSGKGKGRRRGQ*RQIRGAQREKRRGARGGDTPGSTQQLLQQRGT*WSRA*TTCCTQGVWWRLRGSG*CR 1395
Range 5: 1247 to 1387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 32/47(68%) | 0/47(0%) | Minus/Plus |
Query 9 RPAHLSP*RESIAQLPAAQVCSEVAANQQHPGQ*HISSHHSLGKLGS 149 RPAHL P RE + QLPAAQVC+EVAA+QQHP +*H+ HH+ G+LGS Subject 1247 RPAHLPPGREPLPQLPAAQVCAEVAADQQHPRE*HLPGHHTSGELGS 1387
Range 6: 1027 to 1170 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 29/48(60%) | 0/48(0%) | Minus/Plus |
Query 226 ATSLATQKSLPHLLNAALGSRMTPSCTCRQREWLDASRLVPILSACTL 369 ATS AT KS PH L+AA GS TPSCT ++ L ASR VP SA TL Subject 1027 ATSPATPKSPPHPLSAARGSCTTPSCTSLLKKLLGASRRVPTSSASTL 1170
Range 7: 1225 to 1386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 32/54(59%) | 0/54(0%) | Minus/Plus |
Query 10 FTAIDFMATSSSIALKRIHRTVTSSPSLL*SGCKPTASRAMTYF*PSLAWKVGV 171 FTA ATSS A KR T TSSPSL *SGC+PTAS+ MT PS W+ GV Subject 1225 FTATASTATSSFTAWKRTPPTATSSPSLR*SGCRPTASKGMTSSWPSHVWRAGV 1386
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 7
Range 1: 965 to 1336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 115/124(93%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 ARDITRYPEVST+PPECSTWF HD+IMYLSAE VAGCF+ CPHLERLYASLVVPPES+FTDLS APSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGN+IFLAITRLESWGPVH Subject 965 ARDITRYPEVSTAPPECSTWFMHDAIMYLSAEEVAGCFEACPHLERLYASLVVPPESAFTDLSLAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNNIFLAITRLESWGPVH 1336
Range 2: 967 to 1335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.5 bits(488) | 0.0 | 98/123(80%) | 0/123(0%) | Plus/Minus |
Query 3 *TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMSR 371 *TGPQLSKRV+AR M PWMLLV SH ADLGCW*L DGFSSRR*MSWSP R*R*REGA++RSVK DSGGTT EA +RSRWGQ KHPAT SA+RYMM SC+N VLHSGG VETSG*RV+SR Subject 967 *TGPQLSKRVIARKMLFPWMLLVWSHLSADLGCW*LWDGFSSRR*MSWSPWKR*R*REGARERSVKADSGGTTREA*RRSRWGQASKHPATSSAERYMMASCMNHVLHSGGAVETSG*RVISR 1335
Range 3: 971 to 1336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 70/122(57%) | 0/122(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMREPSAAFRR*GRDFWVASDV 367 VNGTP FQASD + VI LDAVGL+PL+ LGLLV V +L +A+DELVAM+++AVKRG EG++ E RR D+RS++A ++G LEASS L R++HDG++ EP AA RR D VASD+ Subject 971 VNGTPAFQASDRQEDVIPLDAVGLEPLKR*LGLLVAVGRVLLEAVDELVAMEAVAVKRGSEGEVGEG*FRRHDERSIEAFQVGAGLEASSDFLGREIHDGIVHEPCAALRRGRGDLGVASDI 1336
Range 4: 975 to 1337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 62/121(51%) | 0/121(0%) | Plus/Minus |
Query 1 CERDPNFPSE*WLEICHCPGCCWFAATSEQTWAAGNCAMDSLQGDR*AGRHEIDSGKERGRRTDQ*KRTQEGRPAKRTSAQDGDKSGSIQPLPLPTGT*WSHA*TKCCIQEVR*RLLGSE* 363 CERDP+FPSE* C+ PGCCW AT TWA G+C S +G R*AGRH SGKER R +*+ R K G + SIQ LP P T*W A*T CC QE R GSE* Subject 975 CERDPSFPSE*SPGRCYSPGCCWSGAT*ALTWAVGSCGTGSPRGGR*AGRHGSGSGKERERGRGR*RLIPAARREKHRGVPGGGRPRSIQRLPRPRDT*WHRA*TMCCTQEGPWRPRGSE* 1337
Range 5: 973 to 1335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 67/121(55%) | 0/121(0%) | Minus/Plus |
Query 3 HHSLPRSLYLTS*MQXXXXXXXXXVPVGRGSGWMLPDLSPS*ALVRFAGRPS*VLFHXXXXXXXXXXXXXSWRPAHLSP*RESIAQLPAAQVCSEVAANQQHPGQ*HISSHHSLGKLGSRS 365 +HSLPR L+ S*+QH+VHA HHV +GRGS WML L P + F+ R + + H + R LSLPL + WRPAHL P E + QLP AQV + VA +QQHPG+*H+ HSLGKLGSRS Subject 973 YHSLPRGLHGPS*VQHMVHARCHHVSLGRGSRWMLRGLPPPGTPLCFSRRAAGISLHRPLPRSLSLPLPLPWRPAHLPPRGEPVPQLPTAQVSA*VAPDQQHPGE*HLPGDHSLGKLGSRS 1335
Range 6: 1167 to 1337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 34/57(60%) | 0/57(0%) | Minus/Plus |
Query 1 FTAIDFMATSSSIALKRIHRTVTSSPSLL*SGCKPTASRAMTYF*PSLAWKVGVPFT 171 FTA MATSSS A +R T T+SPS SG +PTASR +T SLAWK GVPFT Subject 1167 FTATASMATSSSTASRRTRPTATNSPSQRLSGSRPTASRGITSSWRSLAWKAGVPFT 1337
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 9
Range 1: 1017 to 1388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.3 bits(625) | 0.0 | 114/124(92%) | 0/124(0%) | Minus/Plus |
Query 2 ARDITRYPEVSTSPPECSTWFTHDSIMYLSAEGVAGCFQTCPHLERLYASLVVPPESSFTDLSFAPSLYRYRFHGDQLIYRLEENPSHSYQQPKSALKWLQTNSIQGNDIFLAITRLESWGPVH 373 ARDITRYPE S +PPECSTWF HDSIMYLSAE VAGCFQ CPHLERLYASL+VPPESSFTDLS PSLYRYRFHGDQLIYRLEENPSHSYQQPK+ALKWLQTNSIQGNDIFLAITRLESWGPVH Subject 1017 ARDITRYPETSPTPPECSTWFMHDSIMYLSAEEVAGCFQACPHLERLYASLIVPPESSFTDLSLNPSLYRYRFHGDQLIYRLEENPSHSYQQPKAALKWLQTNSIQGNDIFLAITRLESWGPVH 1388
Range 2: 1019 to 1387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.8 bits(445) | 0.0 | 91/123(74%) | 0/123(0%) | Plus/Minus |
Query 3 *TGPQLSKRVMARNMSLPWMLLVCSHFRADLGCW*LCDGFSSRR*MSWSP*NR*R*REGAKDRSVKEDSGGTTSEAYKRSRWGQVWKHPATPSADRYMMESCVNQVLHSGGEVETSG*RVMSR 371 *TGPQLS+RV+AR +S PWMLLVCSH RA LGCW*L DGFSS R*+S SP R * EG ++RSVKEDSGGT EA SRWGQ WK PAT SA+RYMMESC+NQVLHSGG E SG*RVMSR Subject 1019 *TGPQLSRRVIARKISFPWMLLVCSHLRAALGCW*L*DGFSSSR*IS*SPWKRYL*SEGLRERSVKEDSGGTMREA*SLSRWGQAWKQPATSSAERYMMESCMNQVLHSGGVGEVSG*RVMSR 1387
Range 3: 1017 to 1388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 65/124(52%) | 0/124(0%) | Plus/Minus |
Query 2 VNGTPTFQASDG*KYVIALDAVGLQPLQSRLGLLVTVRWILFKAIDELVAMKSIAVKRGGEGQISERGLRRDDQRSVQALKMGTSLEASSHSLCRQVHDGVMREPSAAFRR*GRDFWVASDVAG 373 VNGTPT ASD K ++ LDAVGLQPL+S LGLLV VR + + +++L+ ++++ V+RG EG++ E GLRRDD+R +++L++G LEA+SH +VHDGVM EP A RR R V DVAG Subject 1017 VNGTPTL*ASDCEKDIVPLDAVGLQPLESSLGLLVAVRRVFLEPVNQLITVEAVPVERGVEGEVCEGGLRRDDERGIKSLEVGAGLEAASHFFSGEVHDGVMHEPGATLRRGRRGLRVTGDVAG 1388
Range 4: 1279 to 1389 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 23/37(62%) | 0/37(0%) | Plus/Minus |
Query 1 CERDPNFPSE*WLEICHCPGCCWFAATSEQTWAAGNC 111 CERDPN E* E GCCWFAAT EQ WA G+C Subject 1279 CERDPNSLGE*LRERYRSLGCCWFAAT*EQPWAVGSC 1389
Range 5: 1018 to 1221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 31/68(46%) | 0/68(0%) | Plus/Minus |
Query 169 KERGRRTDQ*KRTQEGRPAKRTSAQDGDKSGSIQPLPLPTGT*WSHA*TKCCIQEVR*RLLGSE*CRG 372 + RG *+RT EGR + ++ G + GS QPL GT*WSHA*T+C E R G+ *CRG Subject 1018 RARG*GRGL*RRTPEGR*ERHKVSRGGGRLGSSQPLLQRRGT*WSHA*TRCYTPEG*ERSQGNG*CRG 1221
Range 6: 1264 to 1389 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 24/42(57%) | 0/42(0%) | Minus/Plus |
Query 1 KRIHRTVTSSPSLL*SGCKPTASRAMTYF*PSLAWKVGVPFT 126 ++ T T+SP LL SGCKPTAS+ F SLA +VGVPFT Subject 1264 RKTRLTATNSPRLLSSGCKPTASKGTISFSQSLA*RVGVPFT 1389
Range 7: 1018 to 1143 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 21/42(50%) | 0/42(0%) | Minus/Plus |
Query 247 PATSLATQKSLPHLLNAALGSRMTPSCTCRQREWLDASRLVP 372 PATS T + L L + A GS MTPSCT ++WL AS+ P Subject 1018 PATSPVTLRPLLPLRSVAPGSCMTPSCTSPLKKWLAASKPAP 1143
Nucleotide Sequence (124 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
96.4 | 303.1 | 28% | 2.081e-19 | 54% | KY513701.1 | |
96.4 | 303.1 | 28% | 2.081e-19 | 54% | NC_034205.1 | |
95.9 | 327.2 | 34% | 2.859e-19 | 61% | KX828705.1 | |
95.0 | 350.9 | 35% | 5.396e-19 | 66% | KY513702.1 | |
83.1 | 185.0 | 35% | 2.082e-15 | 57% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 5
Range 1: 5775 to 5897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 41/41(100%) | 0/41(0%) | Plus/Plus |
Query 1 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL 123 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL Subject 5775 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL 5897
Range 2: 5777 to 5893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 28/39(72%) | 0/39(0%) | Minus/Minus |
Query 3 ALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTL 119 A R RELSME*VE +SQ+SL SR E ETSTRP+LN+TL Subject 5777 ARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITL 5893
Range 3: 5775 to 5897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.0 bits(118) | 0.0 | 22/41(54%) | 0/41(0%) | Minus/Minus |
Query 1 QSSALERIEHGVSGVGQPRQLVEQMREQGDFDATQLEHDLD 123 + + L+ +EHGV GV +P +LV+Q+ E+ DFD TQLEH+LD Subject 5775 ERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLD 5897
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 5
Range 1: 5775 to 5897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 41/41(100%) | 0/41(0%) | Plus/Plus |
Query 1 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL 123 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL Subject 5775 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL 5897
Range 2: 5777 to 5893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 28/39(72%) | 0/39(0%) | Minus/Minus |
Query 3 ALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTL 119 A R RELSME*VE +SQ+SL SR E ETSTRP+LN+TL Subject 5777 ARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITL 5893
Range 3: 5775 to 5897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.0 bits(118) | 0.0 | 22/41(54%) | 0/41(0%) | Minus/Minus |
Query 1 QSSALERIEHGVSGVGQPRQLVEQMREQGDFDATQLEHDLD 123 + + L+ +EHGV GV +P +LV+Q+ E+ DFD TQLEH+LD Subject 5775 ERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLD 5897
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 5
Range 1: 5717 to 5839 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 40/41(98%) | 0/41(0%) | Plus/Plus |
Query 1 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL 123 IKVMFKLGRVE+SLFSHLLHKLSWLSYSTYSMLNSLQRRAL Subject 5717 IKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRAL 5839
Range 2: 5719 to 5835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 31/39(79%) | 0/39(0%) | Minus/Minus |
Query 3 ALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTL 119 A R RELSME*VE*DSQ+SL SR*E RE STRP+LN+TL Subject 5719 ARRCRELSME*VE*DSQESL*SR*EKREISTRPSLNITL 5835
Range 3: 5717 to 5839 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.7 bits(133) | 0.0 | 25/41(61%) | 0/41(0%) | Minus/Minus |
Query 1 QSSALERIEHGVSGVGQPRQLVEQMREQGDFDATQLEHDLD 123 + + L+RIEHGVSGV QP +LV+QMRE+ D DA +LEH D Subject 5717 ERATLQRIEHGVSGVRQPGELVKQMREERDLDAAELEHHFD 5839
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 5
Range 1: 5776 to 5898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 40/41(98%) | 0/41(0%) | Plus/Plus |
Query 1 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL 123 IKVMFKLGRVEVSLFSHLLH+LSWLSYSTYSMLNSLQRRAL Subject 5776 IKVMFKLGRVEVSLFSHLLHRLSWLSYSTYSMLNSLQRRAL 5898
Range 2: 5778 to 5897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 32/40(80%) | 0/40(0%) | Minus/Minus |
Query 3 RALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTL 122 RA RWRELSME*VE +SQ+SL S+*E RETSTRP+LNMTL Subject 5778 RARRWRELSME*VEYESQESL*SK*EKRETSTRPSLNMTL 5897
Range 3: 5776 to 5898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.4 bits(148) | 0.0 | 27/41(66%) | 0/41(0%) | Minus/Minus |
Query 1 QSSALERIEHGVSGVGQPRQLVEQMREQGDFDATQLEHDLD 123 + S LER+EHGVSGV +P + V+Q+RE+GDFDAT+LEHD D Subject 5776 EGSTLERVEHGVSGV*EPGEPVKQVREEGDFDATKLEHDFD 5898
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 3
Range 1: 828 to 950 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 34/41(83%) | 0/41(0%) | Plus/Plus |
Query 1 IKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL 123 +KVMFKLGRVEVSLF+HLL KL+WLSYS+Y+ LNSLQRRAL Subject 828 VKVMFKLGRVEVSLFAHLLSKLTWLSYSSYAYLNSLQRRAL 950
Nucleotide Sequence (319 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
203.6 | 558.9 | 28% | 7.025e-51 | 46% | KY513701.1 | |
203.6 | 558.9 | 28% | 7.025e-51 | 46% | NC_034205.1 | |
203.6 | 691.4 | 22% | 7.025e-51 | 53% | KX828705.1 | |
203.6 | 641.6 | 21% | 7.025e-51 | 48% | AY706994.1 | |
203.6 | 561.6 | 21% | 7.025e-51 | 45% | KY513702.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 5
Range 1: 1425 to 1688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 84/88(95%) | 0/88(0%) | Plus/Plus |
Query 2 VLTDDSLFFSSPDAVEIPAASSIQQGLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQRYVRTQSNKPEYSWVTSSAWDNLQHFVTETAH 265 VLTDDSLFFSSPDAVEIPAASSIQQ LRHRLVPSAVYHSLFIYVRAVRTLRQTDPQ YVRTQSNKPEY+WVTS+AWDNLQHFVTETAH Subject 1425 VLTDDSLFFSSPDAVEIPAASSIQQSLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQGYVRTQSNKPEYAWVTSAAWDNLQHFVTETAH 1688
Range 2: 1424 to 1684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.3 bits(350) | 0.0 | 76/87(87%) | 0/87(0%) | Minus/Minus |
Query 1 AVSVTKCCKLSQAEEVTQEYSGLLL*VRT*R*GSVCLKVLTART*MNREW*TAEGTRR*RRPCWMEEAAGISTASGEEKKRESSVST 261 AVSVTKC +LSQA EVTQ YSGLLL*VRT GSVC +VLTART*MNREW*TAEGTRR*RR CWMEEAAGISTASGEEKKRESSV T Subject 1424 AVSVTKC*RLSQAAEVTQAYSGLLL*VRTYPWGSVCRRVLTART*MNREW*TAEGTRR*RRLCWMEEAAGISTASGEEKKRESSVRT 1684
Range 3: 1432 to 1704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 42/91(46%) | 0/91(0%) | Minus/Minus |
Query 9 WVCLGDARSL*QSAASCPRLRRLPRSTRACCFECEHSAEDQSALRF*QLGHR*TENGXXXXXXXXXXDPAGWRKRQGFPLRPGRRRKESRQ 281 W D R *QSA CPR ++ P+ TR CC EC + D+S * R*T +GRR RE D D D AGW++R G R +RR+ SRQ Subject 1432 WCAADDERFR*QSAEGCPRQQK*PKRTRXCCSECGRTLGDRSVEES*LRARR*TGSGRRPREPDGDGDFAGWKRRPGSQRRLEKRRRGSRQ 1704
Range 4: 1428 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 32/62(52%) | 0/62(0%) | Minus/Minus |
Query 5 ALSANIALRISLP*GSDSSDIDEQRMVDGGGNETMTKTLLDGGSGRDFHCVRGGEEKRVVSQ 190 ALSA++ L I L D + +DEQ +VDG GN+T+T+TLLDG GRD + V EE+ VVS+ Subject 1428 ALSADVPLGIGLSKSPDCAHVDEQGVVDGRGNQTVTETLLDGRGGRDLNGVWRREEEGVVSE 1613
Range 5: 1424 to 1690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 44/89(49%) | 0/89(0%) | Plus/Plus |
Query 1 CAD*RLSFLLLPGRSGNPCRFLHPAGXXXXXXXXXXXPFSVHLCPSCQNLKAD*SSALCSHSKQQARVXXXXXXXXXXXXXXCHRDRAS 267 C *RL LL R +P R HPA S S S SL RLP VHL Q+ D S + HS+QQ RV LG+ LGQ +ALCHR+R+S Subject 1424 CPH*RLPLLLFSRRR*DPGRLFHPAKSPSPSGSLGRLPLPVHLRARSQDSSTDRSPRVRPHSEQQXRVRLGHFCCLGQPSALCHRNRSS 1690
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 5
Range 1: 1425 to 1688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 84/88(95%) | 0/88(0%) | Plus/Plus |
Query 2 VLTDDSLFFSSPDAVEIPAASSIQQGLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQRYVRTQSNKPEYSWVTSSAWDNLQHFVTETAH 265 VLTDDSLFFSSPDAVEIPAASSIQQ LRHRLVPSAVYHSLFIYVRAVRTLRQTDPQ YVRTQSNKPEY+WVTS+AWDNLQHFVTETAH Subject 1425 VLTDDSLFFSSPDAVEIPAASSIQQSLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQGYVRTQSNKPEYAWVTSAAWDNLQHFVTETAH 1688
Range 2: 1424 to 1684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.3 bits(350) | 0.0 | 76/87(87%) | 0/87(0%) | Minus/Minus |
Query 1 AVSVTKCCKLSQAEEVTQEYSGLLL*VRT*R*GSVCLKVLTART*MNREW*TAEGTRR*RRPCWMEEAAGISTASGEEKKRESSVST 261 AVSVTKC +LSQA EVTQ YSGLLL*VRT GSVC +VLTART*MNREW*TAEGTRR*RR CWMEEAAGISTASGEEKKRESSV T Subject 1424 AVSVTKC*RLSQAAEVTQAYSGLLL*VRTYPWGSVCRRVLTART*MNREW*TAEGTRR*RRLCWMEEAAGISTASGEEKKRESSVRT 1684
Range 3: 1432 to 1704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 42/91(46%) | 0/91(0%) | Minus/Minus |
Query 9 WVCLGDARSL*QSAASCPRLRRLPRSTRACCFECEHSAEDQSALRF*QLGHR*TENGXXXXXXXXXXDPAGWRKRQGFPLRPGRRRKESRQ 281 W D R *QSA CPR ++ P+ TR CC EC + D+S * R*T +GRR RE D D D AGW++R G R +RR+ SRQ Subject 1432 WCAADDERFR*QSAEGCPRQQK*PKRTRXCCSECGRTLGDRSVEES*LRARR*TGSGRRPREPDGDGDFAGWKRRPGSQRRLEKRRRGSRQ 1704
Range 4: 1428 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 32/62(52%) | 0/62(0%) | Minus/Minus |
Query 5 ALSANIALRISLP*GSDSSDIDEQRMVDGGGNETMTKTLLDGGSGRDFHCVRGGEEKRVVSQ 190 ALSA++ L I L D + +DEQ +VDG GN+T+T+TLLDG GRD + V EE+ VVS+ Subject 1428 ALSADVPLGIGLSKSPDCAHVDEQGVVDGRGNQTVTETLLDGRGGRDLNGVWRREEEGVVSE 1613
Range 5: 1424 to 1690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 44/89(49%) | 0/89(0%) | Plus/Plus |
Query 1 CAD*RLSFLLLPGRSGNPCRFLHPAGXXXXXXXXXXXPFSVHLCPSCQNLKAD*SSALCSHSKQQARVXXXXXXXXXXXXXXCHRDRAS 267 C *RL LL R +P R HPA S S S SL RLP VHL Q+ D S + HS+QQ RV LG+ LGQ +ALCHR+R+S Subject 1424 CPH*RLPLLLFSRRR*DPGRLFHPAKSPSPSGSLGRLPLPVHLRARSQDSSTDRSPRVRPHSEQQXRVRLGHFCCLGQPSALCHRNRSS 1690
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 6
Range 1: 1367 to 1630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 84/88(95%) | 0/88(0%) | Plus/Plus |
Query 2 VLTDDSLFFSSPDAVEIPAASSIQQGLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQRYVRTQSNKPEYSWVTSSAWDNLQHFVTETAH 265 VLTDDSLFFSSPDAVEIPAASSIQQ LRHRLVPSAVYHSLFIYVRAVRTLRQTDPQ YVRTQSNKPEY+WVTS+AWDNLQHFVTETAH Subject 1367 VLTDDSLFFSSPDAVEIPAASSIQQSLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQGYVRTQSNKPEYAWVTSAAWDNLQHFVTETAH 1630
Range 2: 1366 to 1626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 73/87(84%) | 0/87(0%) | Minus/Minus |
Query 1 AVSVTKCCKLSQAEEVTQEYSGLLL*VRT*R*GSVCLKVLTART*MNREW*TAEGTRR*RRPCWMEEAAGISTASGEEKKRESSVST 261 AVSVTKC +LSQA EVTQ YSGLLL VRT* *GSVC +VLTART M REW*TA+GTRR RR CWMEEAAGISTASGEEKKRESSV T Subject 1366 AVSVTKC*RLSQAAEVTQAYSGLLLWVRT*P*GSVCRRVLTARTYMKREW*TADGTRRWRRLCWMEEAAGISTASGEEKKRESSVRT 1626
Range 3: 1377 to 1646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 48/90(53%) | 0/90(0%) | Minus/Minus |
Query 12 WVCLGDARSL*QSAASCPRLRRLPRSTRACCFECEHSAEDQSALRF*QLGHR*TENGXXXXXXXXXXDPAGWRKRQGFPLRPGRRRKESR 281 W D RS *++A CP+ RR P+ T ACC C H+ EDQSA F*Q G * NGR E D E GWRKRQG LRPGR+R+ SR Subject 1377 WSSADDGRSR*RNAEGCPKQRR*PKHTLACCSGCGHNPEDQSAAEF*QRGRI*RGNGRPLMELGDGEGSVGWRKRQGSQLRPGRKRRGSR 1646
Range 4: 1367 to 1555 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 38/63(60%) | 0/63(0%) | Minus/Minus |
Query 2 ALSANIALRISLP*GSDSSDIDEQRMVDGGGNETMTKTLLDGGSGRDFHCVRGGEEKRVVSQH 190 AL A+I LRISLP SDS+D+ E+ MVD N M K LLDGGSGRD +CVRGG+E+ VV ++ Subject 1367 ALGADITLRISLPQSSDSADVYEEGMVDR*WN*AMAKALLDGGSGRDLNCVRGGKEEGVVREN 1555
Range 5: 1378 to 1569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 39/64(61%) | 0/64(0%) | Plus/Plus |
Query 13 RLSFLLLPGRSGNPCRFLHPAGXXXXXXXXXXXPFSVHLCPSCQNLKAD*SSALCSHSKQQARV 204 RL L LPGRS +PCRFLHP S S S+ LPF +H+ P CQN AD*SS LC H +QQARV Subject 1378 RLPLLFLPGRS*DPCRFLHPTEPSPSPSSISGLPFPLHIRPRCQNSAAD*SSGLCPHPEQQARV 1569
Range 6: 1377 to 1556 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 35/60(58%) | 0/60(0%) | Plus/Plus |
Query 12 TTLFSSPPRTQWKSLPLPPSSRVFVIVSFPPPSTILCSSMSELSEP*GRLILSAMFALKA 191 TT S PPRTQ +SLPLPPS+R F I F STI S S LSE GRLIL M A +A Subject 1377 TTPSSFPPRTQLRSLPLPPSNRAFAIA*FHQRSTIPSSYTSALSELCGRLILRVMSAPRA 1556
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 7
Range 1: 1419 to 1682 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 84/88(95%) | 0/88(0%) | Plus/Plus |
Query 2 VLTDDSLFFSSPDAVEIPAASSIQQGLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQRYVRTQSNKPEYSWVTSSAWDNLQHFVTETAH 265 VLTDDSLFFSSPDAVEIPAASSIQQ LRHRLVPSAVYHSLFIYVRAVRTLRQTDPQ YVRTQSNKPEY+WVTS+AWDNLQHFVTETAH Subject 1419 VLTDDSLFFSSPDAVEIPAASSIQQSLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQGYVRTQSNKPEYAWVTSAAWDNLQHFVTETAH 1682
Range 2: 1418 to 1681 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 72/88(82%) | 0/88(0%) | Minus/Minus |
Query 1 CAVSVTKCCKLSQAEEVTQEYSGLLL*VRT*R*GSVCLKVLTART*MNREW*TAEGTRR*RRPCWMEEAAGISTASGEEKKRESSVST 264 CAVSVTKCC+LSQA EVTQ YSGLLL*VRT* GSVC +V TA T MNREW TAEGT R R+ CWMEEAAGISTASGEEKKRESSV T Subject 1418 CAVSVTKCCRLSQAAEVTQAYSGLLL*VRT*PWGSVCRRVRTALTYMNREWYTAEGTNRWRKLCWMEEAAGISTASGEEKKRESSVKT 1681
Range 3: 1422 to 1607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 36/62(58%) | 0/62(0%) | Minus/Minus |
Query 5 ALSANIALRISLP*GSDSSDIDEQRMVDGGGNETMTKTLLDGGSGRDFHCVRGGEEKRVVSQ 190 ALSAN+AL I LP +DS D+ EQ +V GG ++ M + LLDGGS DFH V GEE+ VVSQ Subject 1422 ALSANVALGIGLPESADSPDVYEQGVVHGGRHQPMAQALLDGGSCGDFHGVGRGEEEGVVSQ 1607
Range 4: 1570 to 1698 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 24/43(56%) | 0/43(0%) | Minus/Minus |
Query 153 WVCLGDARSL*QSAASCPRLRRLPRSTRACCFECEHSAEDQSA 281 W GDARS QSAA P+ RR P+ T+ACC ECE S D+ A Subject 1570 WCVGGDARSPSQSAAGYPKRRR*PKHTQACCSECERSLGDRFA 1698
Range 5: 1423 to 1488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 15/22(68%) | 0/22(0%) | Minus/Minus |
Query 6 GWRKRQGFPLRPGRRRKESRQS 71 GWRK +GFP R RRR+ SRQS Subject 1423 GWRKLRGFPRRRERRRRGSRQS 1488
Range 6: 1424 to 1615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 31/64(48%) | 0/64(0%) | Plus/Plus |
Query 7 D*RLSFLLLPGRSGNPCRFLHPAGXXXXXXXXXXXPFSVHLCPSCQNLKAD*SSALCSHSKQQA 198 D*RL LLL R GNP FLHP + S + RR+P VH+ C + A+ S L SHS+QQA Subject 1424 D*RLPLLLLSRRRGNPRSFLHPTKLAPSVGAFRRVPLPVHIRQGCPHSPANRSPRLRSHSEQQA 1615
Range 7: 1423 to 1608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 31/62(50%) | 0/62(0%) | Plus/Plus |
Query 6 *LTTLFSSPPRTQWKSLPLPPSSRVFVIVSFPPPSTILCSSMSELSEP*GRLILSAMFALKA 191 *LTT SSP T WKS LPPS++ I PP T CS S LS G+ I A FAL+A Subject 1423 *LTTPSSSPLPTPWKSPQLPPSNKACAIGWCLPPCTTPCSYTSGLSALSGKPIPKATFALRA 1608
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 5
Range 1: 1426 to 1689 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 84/88(95%) | 0/88(0%) | Plus/Plus |
Query 2 VLTDDSLFFSSPDAVEIPAASSIQQGLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQRYVRTQSNKPEYSWVTSSAWDNLQHFVTETAH 265 VLTDDSLFFSSPDAVEIPAASSIQQ LRHRLVPSAVYHSLFIYVRAVRTLRQTDPQ YVRTQSNKPEY+WVTS+AWDNLQHFVTETAH Subject 1426 VLTDDSLFFSSPDAVEIPAASSIQQSLRHRLVPSAVYHSLFIYVRAVRTLRQTDPQGYVRTQSNKPEYAWVTSAAWDNLQHFVTETAH 1689
Range 2: 1425 to 1685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 75/87(86%) | 0/87(0%) | Minus/Minus |
Query 1 AVSVTKCCKLSQAEEVTQEYSGLLL*VRT*R*GSVCLKVLTART*MNREW*TAEGTRR*RRPCWMEEAAGISTASGEEKKRESSVST 261 AVSVTKC +LSQA EVTQ YSGLLL VRT* *GSVC +VLTART*M REW*TAEGTRR RR CWMEEAAGISTASGEEKKRESSV T Subject 1425 AVSVTKC*RLSQAAEVTQAYSGLLLWVRT*P*GSVCRRVLTART*MKREW*TAEGTRRWRRLCWMEEAAGISTASGEEKKRESSVRT 1685
Range 3: 1426 to 1614 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 31/63(49%) | 0/63(0%) | Minus/Minus |
Query 2 ALSANIALRISLP*GSDSSDIDEQRMVDGGGNETMTKTLLDGGSGRDFHCVRGGEEKRVVSQH 190 AL A++ LR+ LP SD D+DE+ +VD GN+ M K LLDG GRD + +RGGEE+ +V ++ Subject 1426 ALGADVTLRVGLPQSSDRPDVDEEGVVDRRGNKAMAKALLDGRGGRDLNGIRGGEEEGIVREN 1614
Range 4: 1436 to 1684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 37/83(45%) | 0/83(0%) | Minus/Minus |
Query 12 RSL*QSAASCPRLRRLPRSTRACCFECEHSAEDQSALRF*QLGHR*TENGXXXXXXXXXXDPAGWRKRQGFPLRPGRRRKESR 260 RS ++A CP+ +R P+ TRACC C + E + A F* G R* +GR +RE+ D E AGW++R G PGRRR+ +R Subject 1436 RSRSRNAEDCPKQQR*PKRTRACCSGCGRNPEGRFAAEF*PPGRR*RGSGRPQREQGDGEGFAGWKRRPGSQRHPGRRRRGNR 1684
Range 5: 1425 to 1628 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 32/68(47%) | 0/68(0%) | Plus/Plus |
Query 1 CAD*RLSFLLLPGRSGNPCRFLHPAGXXXXXXXXXXXPFSVHLCPSCQNLKAD*SSALCSHSKQQARV 204 C+ R LLLPG +P R HPA S S SL LP +HL P QN A+ S L H +QQARV Subject 1425 CSHGRFPLLLLPGCR*DPGRLFHPAKPSPSPCSLCGLPLPLHLRPGGQNSAANRPSGLRPHPEQQARV 1628
Nucleotide Sequence (734 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
543.6 | 2147.9 | 42% | 1.105e-152 | 59% | KY513702.1 | |
541.8 | 1976.8 | 41% | 3.938e-152 | 49% | KY513701.1 | |
541.8 | 1976.8 | 41% | 3.938e-152 | 49% | NC_034205.1 | |
538.5 | 1939.9 | 47% | 3.637e-151 | 56% | KX828705.1 | |
515.6 | 1848.4 | 47% | 2.867e-144 | 44% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 14
Range 1: 5566 to 6297 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
543.6 bits(1180) | 0.0 | 228/244(93%) | 0/244(0%) | Minus/Plus |
Query 3 EGCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAPRVLTGGLHLPSSAPMSNETQLPISGRPSRDDHRSDPQPSLPLAPQVKESQALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITHLEVV 734 EGCIRSPVALFAKLMVCVDDGTI EKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHA ED+KVMFKLGRVEVSLFSHLLH+LSWLSYSTYSMLNS+QRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMS+ PRVLTGGL LP+ APMSNE QLPISGRPSRDDHRSDPQP+LPLAP+V+ES ALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEIT+LEVV Subject 5566 EGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHRLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSTTPRVLTGGLILPAPAPMSNEAQLPISGRPSRDDHRSDPQPTLPLAPKVQESPALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITNLEVV 6297
Range 2: 5568 to 6071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
311.3 bits(673) | 0.0 | 140/168(83%) | 0/168(0%) | Plus/Minus |
Query 229 PEMGSWVSFDMGADEGRCRPPVRTRGADDIENVWSNSPCSSVTSLESPGKC*RTAFPRRALRWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 PEMGSW SFDMGA GR RPPVRTRG DIENV SNSPCSSVTSLESPGKC RTA PRRA RW E SME VEYESQESL S+ EKRETSTRPSLNMTL SS AWRQKKS TAD *GTDS+G RFQKASPRE P+ENSVA E SFS MVPSSTQTMSLA SATGERMQP Subject 5568 PEMGSWASFDMGAGAGRMRPPVRTRGVVDIENV*SNSPCSSVTSLESPGKCWRTALPRRARRWRELSME*VEYESQESL*SK*EKRETSTRPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSRFQKASPRE*PIENSVAYESSFSSMVPSSTQTMSLANSATGERMQP 6071
Range 3: 6132 to 6296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 50/55(91%) | 0/55(0%) | Plus/Minus |
Query 4 TTSRWVISQLRNGSVSFFKVVEAARSTVKAAESLFIMRATHWKGMESESACDSLT 168 TTSR VISQLRNGSVSFF+VVEAARSTVKAAESL IMRATHWKGMESESA DS T Subject 6132 TTSRLVISQLRNGSVSFFRVVEAARSTVKAAESLLIMRATHWKGMESESAGDSWT 6296
Range 4: 5566 to 6294 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.0 bits(751) | 0.0 | 160/243(66%) | 0/243(0%) | Plus/Minus |
Query 6 DFEVGDFTAPERVREFLQSGGGSQIDSEGCGVTLYYESNPLEGDGE*ERLRFLDLGXXXXXXXXXXTMVIARRTTRDGQLGLI*HGCGRGKMQAASEDARG**H*KCVEQFTL*LGNLFGITREMLTNGFSTEGSALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAAL 734 D E+GD TAPE +REFLQSGGGS++DSEG G+ L YESNPLEGDGE*ER RFLD GRERK RLRIR MVI RRTTRDGQLG I*HG + + A +DAR *H*+CV+QFTL*L +LFG+TR++L NGF+ EGS L+ V+HGV GV EP E V+Q+ EEGDF A + EHD DVL SVA EE++ L+RD D E+IPEGVT+R+ D E SG+ E+LL+DG VVHT+HE GE+RD G NA L Subject 5566 DLEIGDLTAPEWIREFLQSGGGSEVDSEGGGIALDYESNPLEGDGE*ERRRFLDFGRERKSRLRIRAMVITRRTTRDGQLGFI*HGGRSREDETAGKDARSG*H*ECVKQFTL*LSDLFGVTRKVLANGFAAEGSTLERVEHGVSGV*EPGEPVKQVREEGDFDATKLEHDFDVL*SVATEEIKDSGLIRDRFDGEQIPEGVTERMTD*ELSGIREQLLVDGAVVHTDHEFGEQRDGGANATL 6294
Range 5: 5568 to 5792 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 46/75(61%) | 0/75(0%) | Minus/Plus |
Query 508 GLHSFPCRALRQAHGLCGRRYHPREASLLRH*ILHRPLSG*RLLESSPDRVRPLPISRVRLLLPPRSGGRQGHVQ 732 GLHS P RA+RQ HGLCGRR+H REA+L+ H*+L+R S *RLLES+P R+ PL I + LL PR G Q HVQ Subject 5568 GLHSLPRRAVRQTHGLCGRRHHRREAALVCH*VLNRSFSR*RLLESAPHRICPLSIRCL*FLLSPRFRGHQSHVQ 5792
Range 6: 6138 to 6296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 40/53(75%) | 0/53(0%) | Minus/Plus |
Query 4 GIAGALTLHPLPVGCSHNKE*LRSLHCRSGCLHHFEETHGPVPEL*NHPPRSR 162 GIAGALTLHPLPVGCSHN+E R LHCR CLHH EETHG +PEL*+H R R Subject 6138 GIAGALTLHPLPVGCSHNQERFRRLHCRPRCLHHSEETHGSIPEL*DHQSRGR 6296
Range 7: 5855 to 6004 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 32/50(64%) | 0/50(0%) | Minus/Plus |
Query 296 TPHTPC*TPSNAEPSVEKPFVSISLVIPKRLPSYKVNCSTHFQCHQPLAS 445 TP TPC T S+ EPS KPF S LV PKR SYKVNC TH QC LAS Subject 5855 TPLTPCSTLSSVEPSAAKPFASTFLVTPKRSLSYKVNCFTHSQCQPLLAS 6004
Range 8: 6038 to 6118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 24/27(89%) | 0/27(0%) | Minus/Plus |
Query 182 PCQMRPSCPSLVVLLAMTIVLILSLLF 262 PCQM+PSCPSLVVLL MTI LILSLLF Subject 6038 PCQMKPSCPSLVVLLVMTIALILSLLF 6118
Range 9: 5855 to 6184 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 78/110(71%) | 0/110(0%) | Plus/Minus |
Query 116 EQPTGRGWRVRAPAIP*LGAREEEKAEDQNDGHREKDDQRWAAGSHLTWVRTREDAGRQ*GREGLMTLKMCGAIHLVAR*PLWNHQGNADERLFHGGLCVGWSSAWSMWS 445 EQPTGRGWRVRAPAIP L AREEE AEDQ+DGH EKDDQRWAAG HLTW + + R+*GRE +TL+MC AIHLVA+*PLW+HQ +A ERL GGL G S AWS WS Subject 5855 EQPTGRGWRVRAPAIPGLWAREEE*AEDQSDGHHEKDDQRWAAGLHLTWGQEQGG*DRR*GREEWLTLRMCEAIHLVAQ*PLWSHQESAGERLCRGGLDAGES*AWSKWS 6184
Range 10: 5567 to 5734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 34/56(61%) | 0/56(0%) | Plus/Minus |
Query 566 IGKGRTRSGEDSRRRHPESGRWRIQWRRREASLGWYRRPHKP*AWRRARQGNECSP 733 I KG+ R G DSRRRH E+ R R QW R AS W RRPH+P* WR AR+G+EC+P Subject 5567 IDKGQIRWGADSRRRHRENDRLRTQWHTRAASRRWCRRPHRP*VWRTARRGSECNP 5734
Range 11: 6227 to 6295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 16/23(70%) | 0/23(0%) | Plus/Minus |
Query 5 RLRGG*FHSSGTGP*VSSKWWRQ 73 R R * HSSG P*VSS+WWRQ Subject 6227 RPRDW*SHSSGMDP*VSSEWWRQ 6295
Range 12: 5883 to 6071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 37/63(59%) | 0/63(0%) | Minus/Plus |
Query 229 PTQSPPWKSRSSAFPW*FQRGYRATR*IAPHIFNVISPSRPHWRPASSLVRTHVK*DPAAHLW 417 P SPP +SRS A W* QRG+ ATR*IA HI NV SRP+ R HVK* PAAHLW Subject 5883 PASSPPRQSRSPALSW*LQRGH*ATR*IASHILNVNHSSRPYRRSHPPCSCPHVK*SPAAHLW 6071
Range 13: 5567 to 5734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 35/56(62%) | 0/56(0%) | Minus/Plus |
Query 566 RAAFVPLSRSSPSSWFVWTTVPSKRSFSPTPLNSPSATLWVTPSGIFSRSSPSLTN 733 R AF P SR SP+SW VWTT PS RS S PL+S S L VTPSGI S S+ SL N Subject 5567 RVAFAPPSRCSPNSWSVWTTAPSTRSCSRMPLSSQSVILSVTPSGICSPSNLSLIN 5734
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 13
Range 1: 5565 to 6296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
541.8 bits(1176) | 0.0 | 226/244(93%) | 0/244(0%) | Minus/Plus |
Query 3 EGCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAPRVLTGGLHLPSSAPMSNETQLPISGRPSRDDHRSDPQPSLPLAPQVKESQALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITHLEVV 734 EGCIRSPVALFAKLMVCVDDGTI EKLLSYATEFSIGHSLGDAFWNLLPI+SVPYQSAVFDFFCRHA ED+KVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNS+QRRAL+GKAVRQHFPGDSKEVTELQGELLHTFSMS+ PRVLTGGL LP SAPMSNE QLP+SGRPSRDDHRSDPQP++PLAP+V+ES ALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEIT+LEVV Subject 5565 EGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALKGKAVRQHFPGDSKEVTELQGELLHTFSMSTTPRVLTGGLLLPVSAPMSNEAQLPVSGRPSRDDHRSDPQPTIPLAPKVQESPALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITNLEVV 6296
Range 2: 5567 to 6070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 133/168(79%) | 0/168(0%) | Plus/Minus |
Query 229 PEMGSWVSFDMGADEGRCRPPVRTRGADDIENVWSNSPCSSVTSLESPGKC*RTAFPRRALRWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 PE G+W SFDMGA+ GR RPPVRTRG DIENV SNSPCSSVTSLESPGKC RTA P A R E SME VEYESQESL SRWEK ETSTRPSLN+TL SS AWRQKKS TADW GT+S+G RFQKASPREWPMENSVA*E SFS +VPSST T+SLAK ATG+RMQP Subject 5567 PETGNWASFDMGAETGRRRPPVRTRGVVDIENV*SNSPCSSVTSLESPGKCWRTALPLSARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRATGDRMQP 6070
Range 3: 6131 to 6295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 48/55(87%) | 0/55(0%) | Plus/Minus |
Query 4 TTSRWVISQLRNGSVSFFKVVEAARSTVKAAESLFIMRATHWKGMESESACDSLT 168 TTSR VISQLR GSVSF +VVEAARSTVKAAESL IMRATHWKGMESESA DS T Subject 6131 TTSRLVISQLRXGSVSFLRVVEAARSTVKAAESLLIMRATHWKGMESESAGDSWT 6295
Range 4: 5565 to 6293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
326.4 bits(706) | 0.0 | 153/243(63%) | 0/243(0%) | Plus/Minus |
Query 6 DFEVGDFTAPERVREFLQSGGGSQIDSEGCGVTLYYESNPLEGDGE*ERLRFLDLGXXXXXXXXXXTMVIARRTTRDGQLGLI*HGCGRGKMQAASEDARG**H*KCVEQFTL*LGNLFGITREMLTNGFSTEGSALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAAL 734 D ++GD TAPE +REFL+SGGGSQ+DSEG G+ L YESNPLEGDGE*ER FLD GRER RLRIR MVIARRTTR+GQLG I*HG G+ +AASE+AR *H*KCV+QFTL*L +L GITREML N + E + L GV+HGV GV EP ELV+Q+GE+ DF + EH+LD+LR +A EEV+ *LV D + E+IPE +T+RVADGE SG+ E+LL++ +V+ H+LG+E DR +AAL Subject 5565 DLQIGDLTAPEXIREFLESGGGSQVDSEGSGIALDYESNPLEGDGE*ERRGFLDFGRERNSRLRIRAMVIARRTTRNGQLGFI*HGSRDGEEKAASENARSG*H*KCVKQFTL*LSHLLGITREMLANSLAFERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDRRPDAAL 6293
Range 5: 5854 to 6117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 58/88(66%) | 0/88(0%) | Minus/Plus |
Query 182 TPHTPC*TPSNAEPSVEKPFVSISLVIPKRLPSYKVNCSTHFQCHQPLASSLAACIFPRPHPCQMRPSCPSLVVLLAMTIVLILSLLF 445 TP TPC TP + S + F SIS VIP+R SYKVNC THFQC LA SLAA P PCQM+PSCP LVVLLAMTI LILSLLF Subject 5854 TPPTPCSTPCSVVRSKARLFASISRVIPRR*LSYKVNCFTHFQCQPLLAFSLAAFSSPSLLPCQMKPSCPFLVVLLAMTIALILSLLF 6117
Range 6: 6137 to 6295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 38/53(72%) | 0/53(0%) | Minus/Plus |
Query 4 GIAGALTLHPLPVGCSHNKE*LRSLHCRSGCLHHFEETHGPVPEL*NHPPRSR 162 GI GALTLHPLPVGCSHN+E R LHCR GCLHH +ETHG PEL*+H R Subject 6137 GIPGALTLHPLPVGCSHNQERFRCLHCRPGCLHHSQETHGSXPEL*DHQSGGR 6295
Range 7: 5567 to 5791 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 40/75(53%) | 0/75(0%) | Minus/Plus |
Query 508 GLHSFPCRALRQAHGLCGRRYHPREASLLRH*ILHRPLSG*RLLESSPDRVRPLPISRVRLLLPPRSGGRQGHVQ 732 GLH R+L QA G+ R ++ EA+LL H*+LHRPLS * LES+P R+ P+P+S + LLL P GG QG+VQ Subject 5567 GLHPVAGRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQ 5791
Range 8: 5908 to 6183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 65/92(71%) | 0/92(0%) | Plus/Minus |
Query 116 EQPTGRGWRVRAPAIP*LGAREEEKAEDQNDGHREKDDQRWAAGSHLTWVRTREDAGRQ*GREGLMTLKMCGAIHLVAR*PLWNHQGNADER 391 EQPTGRGWRVRAP IP L AREE AEDQ+DGHREKDDQ+ A G HLTW + R GRQ* RE +TLKMC AIHLVA+ P WNH GNA E+ Subject 5908 EQPTGRGWRVRAPGIPGLWAREE**AEDQSDGHREKDDQKRATGLHLTWEQRRGGEGRQ*EREEWLTLKMCEAIHLVAQSPPWNHPGNAGEQ 6183
Range 9: 5566 to 5736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 28/57(49%) | 0/57(0%) | Plus/Minus |
Query 563 LIGKGRTRSGEDSRRRHPESGRWRIQWRRREASLGWYRRPHKP*AWRRARQGNECSP 733 L G G + G DSR+ H ESGRWR QW +R AS R P AW+R R CSP Subject 5566 LTGMGLSLWGADSRKHHRESGRWRTQWHKRAASHQ*CHRQRIPSAWQRERPATGCSP 5736
Range 10: 6223 to 6273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 13/17(76%) | 0/17(0%) | Plus/Minus |
Query 26 HSSGTGP*VSSKWWRQP 76 HSSG P*VS +WWRQP Subject 6223 HSSGXDP*VS*EWWRQP 6273
Range 11: 5912 to 6070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 32/53(60%) | 0/53(0%) | Minus/Plus |
Query 229 SSAFPW*FQRGYRATR*IAPHIFNVISPSRPHWRPASSLVRTHVK*DPAAHLW 387 S AFP *FQ G ATR*IA HIFNV SR HWRP+ + +HVK* P A W Subject 5912 SPAFPG*FQGGD*ATR*IASHIFNVNHSSRSHWRPSPPRLCSHVK*SPVARFW 6070
Range 12: 5566 to 5736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/57(49%) | 0/57(0%) | Minus/Plus |
Query 563 RAAFVPLSRSSPSSWFVWTTVPSKRSFSPTPLNSPSATLWVTPSGIFSRSSPSLTNQ 733 RAA S S PS W+ T RS S PL+SPSATL V SGI S + S T+Q Subject 5566 RAASGRRSLSLPS*WYALTMALLMRSCSLMPLSSPSATLSVMLSGICSP*TQSHTSQ 5736
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 13
Range 1: 5565 to 6296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
541.8 bits(1176) | 0.0 | 226/244(93%) | 0/244(0%) | Minus/Plus |
Query 3 EGCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAPRVLTGGLHLPSSAPMSNETQLPISGRPSRDDHRSDPQPSLPLAPQVKESQALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITHLEVV 734 EGCIRSPVALFAKLMVCVDDGTI EKLLSYATEFSIGHSLGDAFWNLLPI+SVPYQSAVFDFFCRHA ED+KVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNS+QRRAL+GKAVRQHFPGDSKEVTELQGELLHTFSMS+ PRVLTGGL LP SAPMSNE QLP+SGRPSRDDHRSDPQP++PLAP+V+ES ALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEIT+LEVV Subject 5565 EGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALKGKAVRQHFPGDSKEVTELQGELLHTFSMSTTPRVLTGGLLLPVSAPMSNEAQLPVSGRPSRDDHRSDPQPTIPLAPKVQESPALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITNLEVV 6296
Range 2: 5567 to 6070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.8 bits(661) | 0.0 | 133/168(79%) | 0/168(0%) | Plus/Minus |
Query 229 PEMGSWVSFDMGADEGRCRPPVRTRGADDIENVWSNSPCSSVTSLESPGKC*RTAFPRRALRWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 PE G+W SFDMGA+ GR RPPVRTRG DIENV SNSPCSSVTSLESPGKC RTA P A R E SME VEYESQESL SRWEK ETSTRPSLN+TL SS AWRQKKS TADW GT+S+G RFQKASPREWPMENSVA*E SFS +VPSST T+SLAK ATG+RMQP Subject 5567 PETGNWASFDMGAETGRRRPPVRTRGVVDIENV*SNSPCSSVTSLESPGKCWRTALPLSARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRATGDRMQP 6070
Range 3: 6131 to 6295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 48/55(87%) | 0/55(0%) | Plus/Minus |
Query 4 TTSRWVISQLRNGSVSFFKVVEAARSTVKAAESLFIMRATHWKGMESESACDSLT 168 TTSR VISQLR GSVSF +VVEAARSTVKAAESL IMRATHWKGMESESA DS T Subject 6131 TTSRLVISQLRXGSVSFLRVVEAARSTVKAAESLLIMRATHWKGMESESAGDSWT 6295
Range 4: 5565 to 6293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
326.4 bits(706) | 0.0 | 153/243(63%) | 0/243(0%) | Plus/Minus |
Query 6 DFEVGDFTAPERVREFLQSGGGSQIDSEGCGVTLYYESNPLEGDGE*ERLRFLDLGXXXXXXXXXXTMVIARRTTRDGQLGLI*HGCGRGKMQAASEDARG**H*KCVEQFTL*LGNLFGITREMLTNGFSTEGSALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAAL 734 D ++GD TAPE +REFL+SGGGSQ+DSEG G+ L YESNPLEGDGE*ER FLD GRER RLRIR MVIARRTTR+GQLG I*HG G+ +AASE+AR *H*KCV+QFTL*L +L GITREML N + E + L GV+HGV GV EP ELV+Q+GE+ DF + EH+LD+LR +A EEV+ *LV D + E+IPE +T+RVADGE SG+ E+LL++ +V+ H+LG+E DR +AAL Subject 5565 DLQIGDLTAPEXIREFLESGGGSQVDSEGSGIALDYESNPLEGDGE*ERRGFLDFGRERNSRLRIRAMVIARRTTRNGQLGFI*HGSRDGEEKAASENARSG*H*KCVKQFTL*LSHLLGITREMLANSLAFERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDRRPDAAL 6293
Range 5: 5854 to 6117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 58/88(66%) | 0/88(0%) | Minus/Plus |
Query 182 TPHTPC*TPSNAEPSVEKPFVSISLVIPKRLPSYKVNCSTHFQCHQPLASSLAACIFPRPHPCQMRPSCPSLVVLLAMTIVLILSLLF 445 TP TPC TP + S + F SIS VIP+R SYKVNC THFQC LA SLAA P PCQM+PSCP LVVLLAMTI LILSLLF Subject 5854 TPPTPCSTPCSVVRSKARLFASISRVIPRR*LSYKVNCFTHFQCQPLLAFSLAAFSSPSLLPCQMKPSCPFLVVLLAMTIALILSLLF 6117
Range 6: 6137 to 6295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 38/53(72%) | 0/53(0%) | Minus/Plus |
Query 4 GIAGALTLHPLPVGCSHNKE*LRSLHCRSGCLHHFEETHGPVPEL*NHPPRSR 162 GI GALTLHPLPVGCSHN+E R LHCR GCLHH +ETHG PEL*+H R Subject 6137 GIPGALTLHPLPVGCSHNQERFRCLHCRPGCLHHSQETHGSXPEL*DHQSGGR 6295
Range 7: 5567 to 5791 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 40/75(53%) | 0/75(0%) | Minus/Plus |
Query 508 GLHSFPCRALRQAHGLCGRRYHPREASLLRH*ILHRPLSG*RLLESSPDRVRPLPISRVRLLLPPRSGGRQGHVQ 732 GLH R+L QA G+ R ++ EA+LL H*+LHRPLS * LES+P R+ P+P+S + LLL P GG QG+VQ Subject 5567 GLHPVAGRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQ 5791
Range 8: 5908 to 6183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 65/92(71%) | 0/92(0%) | Plus/Minus |
Query 116 EQPTGRGWRVRAPAIP*LGAREEEKAEDQNDGHREKDDQRWAAGSHLTWVRTREDAGRQ*GREGLMTLKMCGAIHLVAR*PLWNHQGNADER 391 EQPTGRGWRVRAP IP L AREE AEDQ+DGHREKDDQ+ A G HLTW + R GRQ* RE +TLKMC AIHLVA+ P WNH GNA E+ Subject 5908 EQPTGRGWRVRAPGIPGLWAREE**AEDQSDGHREKDDQKRATGLHLTWEQRRGGEGRQ*EREEWLTLKMCEAIHLVAQSPPWNHPGNAGEQ 6183
Range 9: 5566 to 5736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 28/57(49%) | 0/57(0%) | Plus/Minus |
Query 563 LIGKGRTRSGEDSRRRHPESGRWRIQWRRREASLGWYRRPHKP*AWRRARQGNECSP 733 L G G + G DSR+ H ESGRWR QW +R AS R P AW+R R CSP Subject 5566 LTGMGLSLWGADSRKHHRESGRWRTQWHKRAASHQ*CHRQRIPSAWQRERPATGCSP 5736
Range 10: 6223 to 6273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 13/17(76%) | 0/17(0%) | Plus/Minus |
Query 26 HSSGTGP*VSSKWWRQP 76 HSSG P*VS +WWRQP Subject 6223 HSSGXDP*VS*EWWRQP 6273
Range 11: 5912 to 6070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 32/53(60%) | 0/53(0%) | Minus/Plus |
Query 229 SSAFPW*FQRGYRATR*IAPHIFNVISPSRPHWRPASSLVRTHVK*DPAAHLW 387 S AFP *FQ G ATR*IA HIFNV SR HWRP+ + +HVK* P A W Subject 5912 SPAFPG*FQGGD*ATR*IASHIFNVNHSSRSHWRPSPPRLCSHVK*SPVARFW 6070
Range 12: 5566 to 5736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/57(49%) | 0/57(0%) | Minus/Plus |
Query 563 RAAFVPLSRSSPSSWFVWTTVPSKRSFSPTPLNSPSATLWVTPSGIFSRSSPSLTNQ 733 RAA S S PS W+ T RS S PL+SPSATL V SGI S + S T+Q Subject 5566 RAASGRRSLSLPS*WYALTMALLMRSCSLMPLSSPSATLSVMLSGICSP*TQSHTSQ 5736
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 11
Range 1: 5507 to 6238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
538.5 bits(1169) | 0.0 | 225/244(92%) | 0/244(0%) | Minus/Plus |
Query 3 EGCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAPRVLTGGLHLPSSAPMSNETQLPISGRPSRDDHRSDPQPSLPLAPQVKESQALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITHLEVV 734 EGCIRSPVALFAKLMVCVDDGTI EKLLSYATEFSIGHSLGD+FWNLLPIESVPYQSAVFDFFCRHA ED+KVMFKLGRVE+SLFSHLLHKLSWLSYSTYSMLNS+QRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSS PRVLTGGL LP+ APMSNE QLP SGRPSRDDHRSDPQP+LPLAP+V+ES ALSL+IPFQWVALIIKSDSAAFTVDLAAS TLKKLTDPFRSCEIT+LEVV Subject 5507 EGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDSFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLLLPTPAPMSNEAQLPTSGRPSRDDHRSDPQPALPLAPKVQESPALSLAIPFQWVALIIKSDSAAFTVDLAASNTLKKLTDPFRSCEITNLEVV 6238
Range 2: 5509 to 6012 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
288.8 bits(624) | 0.0 | 134/168(80%) | 0/168(0%) | Plus/Minus |
Query 229 PEMGSWVSFDMGADEGRCRPPVRTRGADDIENVWSNSPCSSVTSLESPGKC*RTAFPRRALRWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 PE+GSW SFD+GA GR RPPVRTRG DDIENV SNSPCSSVTSLESPGKC RTA PR A R E SME VE +SQESL SR EKRE STRPSLN+TL SS A RQKKS TAD GTDSIG +FQK SPRE P+ENSVA*ERSFS MVPSSTQTMSLAKSATGERMQP Subject 5509 PEVGSWASFDIGAGVGRSRPPVRTRGVDDIENV*SNSPCSSVTSLESPGKCWRTALPRSARRCRELSME*VE*DSQESL*SR*EKREISTRPSLNITLISSEA*RQKKSKTAD*YGTDSIGSKFQKESPRE*PIENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQP 6012
Range 3: 6073 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 47/56(84%) | 0/56(0%) | Plus/Minus |
Query 1 RTTSRWVISQLRNGSVSFFKVVEAARSTVKAAESLFIMRATHWKGMESESACDSLT 168 RTTSR VISQLR GSVSF +V+EAARSTVKAAESL IMRATHWKGM SESA DS T Subject 6073 RTTSRLVISQLRKGSVSFLRVLEAARSTVKAAESLLIMRATHWKGMASESAGDSWT 6240
Range 4: 5507 to 6238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 155/244(64%) | 0/244(0%) | Plus/Minus |
Query 3 DDFEVGDFTAPERVREFLQSGGGSQIDSEGCGVTLYYESNPLEGDGE*ERLRFLDLGXXXXXXXXXXTMVIARRTTRDGQLGLI*HGCGRGKMQAASEDARG**H*KCVEQFTL*LGNLFGITREMLTNGFSTEGSALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAAL 734 DD +VGD TA + V E L+S G +++SEG + L YESNPLEGDGE*ER RFLDLGRER+ RLRIRTMVIARRTTR GQLG I*H GK QAASEDARG *H*KCV+QFTL*L LFG+T +ML + F++E + L ++HGV GVR+P ELV+QM EE D AAE EH D+LRSV +EV+ L+R GLD +++PEGVT+ V + EF GV E+LL++G +VHTNHELG++RD GTNAAL Subject 5507 DDLKVGDLTASKGVCELLESVGSGEVNSEGSRIALNYESNPLEGDGE*ERRRFLDLGRERESRLRIRTMVIARRTTRSGQLGFI*HWGWSGKEQAASEDARGG*H*KCVKQFTL*LSYLFGVTGKMLADSFASERATLQRIEHGVSGVRQPGELVKQMREERDLDAAELEHHFDILRSVTTKEVKDCGLIRHGLDWKQVPEGVTKGVTNREFGGVREELLINGAIVHTNHELGKKRDWGTNAAL 6238
Range 5: 5796 to 6056 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 58/87(67%) | 0/87(0%) | Minus/Plus |
Query 185 TPHTPC*TPSNAEPSVEKPFVSISLVIPKRLPSYKVNCSTHFQCHQPLASSLAACIFPRPHPCQMRPSCPSLVVLLAMTIVLILSLL 445 TP TPC + S K +I V PKR SYKVNC THFQCH PLASSLAAC FP CQM+PSCP LVVLLAMTIVLILSLL Subject 5796 TPLTPCSILCSVARSEAKLSANIFPVTPKR*LSYKVNCFTHFQCHPPLASSLAACSFPLQPQCQMKPSCPLLVVLLAMTIVLILSLL 6056
Range 6: 5509 to 5733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 42/75(56%) | 0/75(0%) | Minus/Plus |
Query 508 GLHSFPCRALRQAHGLCGRRYHPREASLLRH*ILHRPLSG*RLLESSPDRVRPLPISRVRLLLPPRSGGRQGHVQ 732 GLHSFP RA QAHGLCGR +H EA LLRH IL+ L * LLE + +RVR + I + LLL R G Q VQ Subject 5509 GLHSFPSRAFCQAHGLCGRWHH**EAPLLRHRILYWSLPW*LLLELASNRVRAVSIRSL*LLLSSRF*GYQSDVQ 5733
Range 7: 6079 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 31/54(57%) | 0/54(0%) | Minus/Plus |
Query 1 GIAGALTLHPLPVGCSHNKE*LRSLHCRSGCLHHFEETHGPVPEL*NHPPRSRP 162 GIAGALT HPLPVGCSHN E LHC H +E H P+ +L*+H P RP Subject 6079 GIAGALTRHPLPVGCSHN*ERFCCLHC*PRRFQHSQEAHRPLSKL*DHQP*GRP 6240
Range 8: 5796 to 6125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.4 bits(370) | 0.0 | 75/110(68%) | 0/110(0%) | Plus/Minus |
Query 116 EQPTGRGWRVRAPAIP*LGAREEEKAEDQNDGHREKDDQRWAAGSHLTWVRTREDAGRQ*GREGLMTLKMCGAIHLVAR*PLWNHQGNADERLFHGGLCVGWSSAWSMWS 445 EQPTGRGWRVRAPAIP ARE E+AEDQNDGHREKDDQ+WAAG HLT E AGRQ*GREG MTLKMC AIHLVA+ PLW+H+ N +L G + AWS WS Subject 5796 EQPTGRGWRVRAPAIPGPWAREGEQAEDQNDGHREKDDQKWAAGLHLTLGLEWEGAGRQ*GREGWMTLKMCEAIHLVAQLPLWSHRENVGGQLCLGARDAAEN*AWSKWS 6125
Range 9: 5508 to 5675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 33/56(59%) | 0/56(0%) | Plus/Minus |
Query 566 IGKGRTRSGEDSRRRHPESGRWRIQWRRREASLGWYRRPHKP*AWRRARQGNECSP 733 I RTR SRR H S + RI+WR+R AS W RPHKP*AW++AR GNECSP Subject 5508 IDTARTRLEASSRRSHQGSDQ*RIRWRKRGASHQWCHRPHKP*AWQKARLGNECSP 5675
Range 10: 5839 to 6012 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 37/58(64%) | 0/58(0%) | Minus/Plus |
Query 229 PWKSRSSAFPW*FQRGYRATR*IAPHIFNVISPSRPHWRPASSLVRTHVK*DPAAHLW 402 P +S F * QRG ATR*IA HIFNVI PSRPHWRPA S +VK* PAAH W Subject 5839 PRQSCPPTFSR*LQRGN*ATR*IASHIFNVIHPSRPHWRPAPSHSSPNVK*SPAAHFW 6012
Range 11: 5508 to 5675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 34/56(61%) | 0/56(0%) | Minus/Plus |
Query 566 RAAFVPLSRSSPSSWFVWTTVPSKRSFSPTPLNSPSATLWVTPSGIFSRSSPSLTN 733 RAAFVP SR PSSWFVWT P RS S TP NS T VTPSG +SSP N Subject 5508 RAAFVPQSRFLPSSWFVWTMAPLMRSSSLTPPNSLLVTPLVTPSGTCFQSSPCRIN 5675
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 12
Range 1: 618 to 1349 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
515.6 bits(1119) | 0.0 | 214/244(88%) | 0/244(0%) | Minus/Plus |
Query 3 EGCIRSPVALFAKLMVCVDDGTIQEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSIQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSAPRVLTGGLHLPSSAPMSNETQLPISGRPSRDDHRSDPQPSLPLAPQVKESQALSLSIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITHLEVV 734 EGCIRSPVALFAKLMVCVDDGTI EK++SYATEFSIGHSLGDAFWNLLP+E+VPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLF+HLL KL+WLSYS+Y+ LNS+QRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSS P LTGGL L ++ PMSNE QLP SGRPSRDDHR+DPQP+LP+AP+V+ES ALSL+IPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEIT LEVV Subject 618 EGCIRSPVALFAKLMVCVDDGTIDEKMISYATEFSIGHSLGDAFWNLLPLEAVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFAHLLSKLTWLSYSSYAYLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSPPSKLTGGLLLSTTPPMSNEAQLPASGRPSRDDHRTDPQPALPVAPKVQESPALSLTIPFQWVALIIKSDSAAFTVDLAASTTLKKLTDPFRSCEITQLEVV 1349
Range 2: 620 to 1123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
294.3 bits(636) | 0.0 | 131/168(78%) | 0/168(0%) | Plus/Minus |
Query 229 PEMGSWVSFDMGADEGRCRPPVRTRGADDIENVWSNSPCSSVTSLESPGKC*RTAFPRRALRWMEFSMEYVEYESQESLWSRWEKRETSTRPSLNMTLTSSGAWRQKKSNTADW*GTDSIGRRFQKASPREWPMENSVA*ERSFSWMVPSSTQTMSLAKSATGERMQP 732 PE GSW SFDMG PPV G DDIENVWSNSPCSSVTSLESPGKC RTAFPRRA RW EF E ++Q SL RW KRETSTRPSLNMT TSSGAWRQKKS TADW*GT S GRRFQKASPRE PMENSVA*E FS MVPSSTQTMSLAK ATGERMQP Subject 620 PEAGSWASFDMGGVVESRSPPVSFEGGDDIENVWSNSPCSSVTSLESPGKCWRTAFPRRARRWSEFR*A*EE*DNQVSLERRWAKRETSTRPSLNMTFTSSGAWRQKKSKTADW*GTASRGRRFQKASPRECPMENSVA*EIIFSSMVPSSTQTMSLAKRATGERMQP 1123
Range 3: 1184 to 1351 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 50/56(89%) | 0/56(0%) | Plus/Minus |
Query 1 RTTSRWVISQLRNGSVSFFKVVEAARSTVKAAESLFIMRATHWKGMESESACDSLT 168 RTTS WVISQLR GSVSFFKVVEAARSTVKAAESL IMRATHWKGM SESA DS T Subject 1184 RTTSSWVISQLRKGSVSFFKVVEAARSTVKAAESLLIMRATHWKGMVSESAGDSWT 1351
Range 4: 618 to 1340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.0 bits(644) | 0.0 | 143/241(59%) | 0/241(0%) | Plus/Minus |
Query 12 EVGDFTAPERVREFLQSGGGSQIDSEGCGVTLYYESNPLEGDGE*ERLRFLDLGXXXXXXXXXXTMVIARRTTRDGQLGLI*HGCGRGKMQAASEDARG**H*KCVEQFTL*LGNLFGITREMLTNGFSTEGSALDGVQHGVCGVREPRELVEQMGEEGDFYAAEFEHDLDVLRSVAAEEVEHG*LVRDGLDREKIPEGVTQRVADGEFSGVGEKLLLDGTVVHTNHELGEERDRGTNAAL 734 ++GDF A ER+R+ L SGGG ++D EG V L YESNPLEGDGE*ER RFLD GR+RK RLRI MVI RRTTR GQLG I*HG G+ ++ASE **H*KCVEQFTL*L LFG+ R++L N S EG+AL+ V GV GV +P +L E++GEE +F A +FEHDL VLR +AAEEVE+ *LVR L R+++PEG+ + V DGEF G+G ++G VV+ NHELG++ G NA L Subject 618 QLGDFAAAERIRQLL*SGGGGEVDGEGGRVALDYESNPLEGDGE*ERRRFLDFGRDRKSRLRISAMVITRRTTRSGQLGFI*HGGRGGEQKSASELRGW**H*KCVEQFTL*LSYLFGVPRKVLANCLSAEGAALERV*IGVGGVGQPGQLGEEVGEERNFDATKFEHDLHVLRGMAAEEVENR*LVRHSLKRKEVPEGIAKGVPDGEFGGIGNHFFINGAVVNANHELGKKSHGGANATL 1340
Range 5: 907 to 1170 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 57/88(65%) | 0/88(0%) | Minus/Plus |
Query 182 TPHTPC*TPSNAEPSVEKPFVSISLVIPKRLPSYKVNCSTHFQCHQPLASSLAACIFPRPHPCQMRPSCPSLVVLLAMTIVLILSLLF 445 TP TP *T S+A PS E+ F S L PKR SYKVNCSTHFQCH SSLA P PCQM+P+CP LVVLL MTI LILSLLF Subject 907 TPPTPI*TRSSAAPSAERQFASTFLGTPKR*LSYKVNCSTHFQCHHHPRSSLADFCSPPRPPCQMKPNCPLLVVLLVMTIALILSLLF 1170
Range 6: 1193 to 1336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 32/48(67%) | 0/48(0%) | Minus/Plus |
Query 16 IAGALTLHPLPVGCSHNKE*LRSLHCRSGCLHHFEETHGPVPEL*NHP 159 IAGALT HPLPVGCSHN+E L LH R LHHF+E G P+L NHP Subject 1193 IAGALTHHPLPVGCSHNQERLCRLHRRPRRLHHFKEADGSFPQLRNHP 1336
Range 7: 620 to 847 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 39/76(51%) | 0/76(0%) | Minus/Plus |
Query 505 GLHSFPCRALRQAHGLCGRRYHPREASLLRH*ILHRPLSG*RLLESSPDRVRPLPISRVRLLLPPRSGGRQGHVQT 732 GLHS P + QAHGL RR+H + L H ILHR L LLE LP+S RLLLPP GR+GHVQT Subject 620 GLHSLPRGSFCQAHGLR*RRHH**KNDFLCHRILHRALPWRCLLEPPSS*GCALPVSGFRLLLPPCP*GREGHVQT 847
Range 8: 928 to 1236 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 64/103(62%) | 0/103(0%) | Plus/Minus |
Query 116 EQPTGRGWRVRAPAIP*LGAREEEKAEDQNDGHREKDDQRWAAGSHLTWVRTREDAGRQ*GREGLMTLKMCGAIHLVAR*PLWNHQGNADERLFHGGLCVGWS 424 EQPTGRGW VRAPAI L AR+EE+AEDQ DGH EKDDQ+ A G HLTW RQ* +MTLKMCGAIHLVA+ PLW+ Q +A E F GG G S Subject 928 EQPTGRGW*VRAPAILGLWARQEEQAEDQCDGHHEKDDQKRAVGLHLTWGAWWRAEVRQ*ASRVVMTLKMCGAIHLVAQLPLWSPQESAGELPFRGGRGAGAS 1236
Range 9: 619 to 789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 25/57(44%) | 0/57(0%) | Plus/Minus |
Query 563 LIGKGRTRSGEDSRRRHPESGRWRIQWRRREASLGWYRRPHKP*AWRRARQGNECSP 733 L GK + + SRR S RWRI+W R+ W RR KP*AW++ +G+EC+P Subject 619 LTGKAQPQEEGGSRRHRQGSARWRIRWHRKSFFHQWCRRQRKP*AWQKEPRGSECNP 789
Range 10: 1279 to 1335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 11/19(58%) | 0/19(0%) | Plus/Minus |
Query 17 G*FHSSGTGP*VSSKWWRQ 73 G*F S G P S KWWR+ Subject 1279 G*FRSCGKDPSASLKWWRR 1335
Range 11: 935 to 1123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 33/63(52%) | 0/63(0%) | Minus/Plus |
Query 229 PTQSPPWKSRSSAFPW*FQRGYRATR*IAPHIFNVISPSRPHWRPASSLVRTHVK*DPAAHLW 417 P PP K S A W QRG ATR*IAPHIFNVI+ HWR ++ HVK* P A W Subject 935 PAPRPPRKGSSPALSWGLQRGN*ATR*IAPHIFNVITTLEAHWRTSALHHAPHVK*SPTARFW 1123
Range 12: 619 to 789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 25/57(44%) | 0/57(0%) | Minus/Plus |
Query 563 RAAFVPLSRSSPSSWFVWTTVPSKRSFSPTPLNSPSATLWVTPSGIFSRSSPSLTNQ 733 R AF P PSSWF TT P + P P NSPS T PSG LT+Q Subject 619 RVAFAPPWLFLPSSWFALTTAPLMKK*FPMPPNSPSGTPLAMPSGTSFLLRLCLTSQ 789
Nucleotide Sequence (172 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
138.5 | 475.2 | 24% | 4.658e-32 | 56% | KY513701.1 | |
138.5 | 475.2 | 24% | 4.658e-32 | 56% | NC_034205.1 | |
136.2 | 406.3 | 21% | 2.28e-31 | 48% | KX828705.1 | |
135.3 | 521.9 | 24% | 4.303e-31 | 60% | KY513702.1 | |
121.1 | 378.3 | 38% | 8.108e-27 | 51% | AY706994.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 6
Range 1: 5703 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 57/57(100%) | 0/57(0%) | Minus/Plus |
Query 1 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 171 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML Subject 5703 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 5873
Range 2: 5702 to 5872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 44/57(77%) | 0/57(0%) | Plus/Minus |
Query 2 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 172 SME*VE +SQ+SL SR E ETSTRP+LN+TL+SS+AWRQKKSKTADW GTES+GSR Subject 5702 SME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSR 5872
Range 3: 5703 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 32/57(56%) | 0/57(0%) | Plus/Minus |
Query 1 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 171 EHGV GV +P +LV+Q+ E+ DFD TQLEH+LD+ MATEEV++ LV D V +Q Subject 5703 EHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQ 5873
Range 4: 5716 to 5871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 30/52(58%) | 0/52(0%) | Plus/Minus |
Query 3 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*CLLMHGDRRSRKRRTGKGQS 158 AWS+WS A+ AC A R RLR DP *T*P* HGDRRS++ TG G S Subject 5716 AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMGLS 5871
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 6
Range 1: 5703 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 57/57(100%) | 0/57(0%) | Minus/Plus |
Query 1 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 171 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML Subject 5703 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 5873
Range 2: 5702 to 5872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 44/57(77%) | 0/57(0%) | Plus/Minus |
Query 2 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 172 SME*VE +SQ+SL SR E ETSTRP+LN+TL+SS+AWRQKKSKTADW GTES+GSR Subject 5702 SME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSR 5872
Range 3: 5703 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 32/57(56%) | 0/57(0%) | Plus/Minus |
Query 1 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 171 EHGV GV +P +LV+Q+ E+ DFD TQLEH+LD+ MATEEV++ LV D V +Q Subject 5703 EHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQ 5873
Range 4: 5716 to 5871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 30/52(58%) | 0/52(0%) | Plus/Minus |
Query 3 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*CLLMHGDRRSRKRRTGKGQS 158 AWS+WS A+ AC A R RLR DP *T*P* HGDRRS++ TG G S Subject 5716 AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMGLS 5871
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 5
Range 1: 5645 to 5815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 55/57(96%) | 0/57(0%) | Minus/Plus |
Query 1 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 171 LLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVE+SLFSHLLHKLSWLSYSTYSML Subject 5645 LLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSML 5815
Range 2: 5644 to 5814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 44/57(77%) | 0/57(0%) | Plus/Minus |
Query 2 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 172 SME*VE*DSQ+SL SR*E RE STRP+LN+TL+SS+A RQKKSKTAD GT+SIGS+ Subject 5644 SME*VE*DSQESL*SR*EKREISTRPSLNITLISSEA*RQKKSKTAD*YGTDSIGSK 5814
Range 3: 5645 to 5815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 31/57(54%) | 0/57(0%) | Plus/Minus |
Query 1 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 171 EHGVSGV QP +LV+QMRE+ D DA +LEH D+ + T+EV++ GL+R +D KQ Subject 5645 EHGVSGVRQPGELVKQMREERDLDAAELEHHFDILRSVTTKEVKDCGLIRHGLDWKQ 5815
Range 4: 5646 to 5813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 27/56(48%) | 0/56(0%) | Plus/Minus |
Query 3 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*CLLMHGDRRSRKRRTGKGQSRSEA 170 AWSKWS+TA+ AC ADER R RR *T * D+RS++ R ++R EA Subject 5646 AWSKWSKTARRACEADERRERSRRGRA*TSL*YPQKRDDKRSQRLRIDTARTRLEA 5813
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 6
Range 1: 5704 to 5874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 55/57(96%) | 0/57(0%) | Minus/Plus |
Query 1 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 171 LLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLH+LSWLSYSTYSML Subject 5704 LLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHRLSWLSYSTYSML 5874
Range 2: 5703 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 46/57(81%) | 0/57(0%) | Plus/Minus |
Query 2 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 172 SME*VE +SQ+SL S+*E RETSTRP+LNMTLMSS+AWRQKKSKTAD *GT+S+GSR Subject 5703 SME*VEYESQESL*SK*EKRETSTRPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSR 5873
Range 3: 5704 to 5874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 36/57(63%) | 0/57(0%) | Plus/Minus |
Query 1 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 171 EHGVSGV +P + V+Q+RE+GDFDAT+LEHD DV * +ATEE+++ GL+RDR D +Q Subject 5704 EHGVSGV*EPGEPVKQVREEGDFDATKLEHDFDVL*SVATEEIKDSGLIRDRFDGEQ 5874
Range 4: 5714 to 5872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 33/53(62%) | 0/53(0%) | Plus/Minus |
Query 3 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*CLLMHGDRRSRKRRTGKGQSR 161 AWSKWS A+ AC A ER GRLRRD *T* *C L GDRR++++R KGQ R Subject 5714 AWSKWSMRARRACEASERRGRLRRDQA*T*L*CPLKRGDRRNQRQRIDKGQIR 5872
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 5
Range 1: 5547 to 5717 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 48/57(84%) | 0/57(0%) | Minus/Plus |
Query 1 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 171 LLPID+VP+QSAVFDFFCRHA ED+KVMFKLGRVEVSLFSHLL KL+WLSYS+Y+ L Subject 5547 LLPIDAVPFQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLSKLTWLSYSSYAYL 5717
Range 2: 5546 to 5701 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 39/52(75%) | 0/52(0%) | Plus/Minus |
Query 17 E*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 172 E +SQ SL SR E R+TSTRPNLNMTL SS AWRQKKSKTADW GT S+G R Subject 5546 EYESQVSLESRWEKRDTSTRPNLNMTLTSSGAWRQKKSKTADWNGTASMGRR 5701
Range 3: 5547 to 5711 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 28/55(51%) | 0/55(0%) | Plus/Minus |
Query 7 GVSGVGQPRQLVEQMREQGDFDATQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 171 G+ GV +P +L EQM E+ F+ATQLEHD D+ +A EEVE+GGL D +D ++ Subject 5547 GIGGVREPSELGEQMGEERHFNATQLEHDFDILRRVAAEEVEDGGLEWDSIDGEE 5711
Nucleotide Sequence (176 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
142.2 | 449.8 | 20% | 3.657e-33 | 57% | KY513701.1 | |
142.2 | 449.8 | 20% | 3.657e-33 | 57% | NC_034205.1 | |
140.4 | 514.6 | 50% | 1.303e-32 | 59% | KY513702.1 | |
138.5 | 307.9 | 34% | 4.641e-32 | 46% | KX828705.1 | |
136.2 | 450.3 | 56% | 2.271e-31 | 53% | AY706994.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 5
Range 1: 5649 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 58/58(100%) | 0/58(0%) | Minus/Plus |
Query 2 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 175 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS Subject 5649 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 5822
Range 2: 5648 to 5821 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 49/58(84%) | 0/58(0%) | Plus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 176 E ETSTRP+LN+TL+SS+AWRQKKSKTADW GTES+GSRFQKASPRE PMENSVA*E Subject 5648 EKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*E 5821
Range 3: 5649 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 33/58(57%) | 0/58(0%) | Plus/Minus |
Query 2 GKQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIR 175 G++ DFDTTQLEH+LD+ MATEE+++ LV D V +QIPE + + V DGE SGIR Subject 5649 GEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIR 5822
Range 4: 5651 to 5812 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 32/54(59%) | 0/54(0%) | Minus/Plus |
Query 12 LCH*ILHRSLPWRRLLESASDRLCPLPVRRFRFLLSPCIRRHQGHVQVGSCRSL 173 LCH*+LHR L LESA RL P+PV LLSPC+ +QG+VQ GSCRSL Subject 5651 LCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRSL 5812
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 5
Range 1: 5649 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 58/58(100%) | 0/58(0%) | Minus/Plus |
Query 2 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 175 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS Subject 5649 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 5822
Range 2: 5648 to 5821 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 49/58(84%) | 0/58(0%) | Plus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 176 E ETSTRP+LN+TL+SS+AWRQKKSKTADW GTES+GSRFQKASPRE PMENSVA*E Subject 5648 EKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*E 5821
Range 3: 5649 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 33/58(57%) | 0/58(0%) | Plus/Minus |
Query 2 GKQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIR 175 G++ DFDTTQLEH+LD+ MATEE+++ LV D V +QIPE + + V DGE SGIR Subject 5649 GEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIR 5822
Range 4: 5651 to 5812 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 32/54(59%) | 0/54(0%) | Minus/Plus |
Query 12 LCH*ILHRSLPWRRLLESASDRLCPLPVRRFRFLLSPCIRRHQGHVQVGSCRSL 173 LCH*+LHR L LESA RL P+PV LLSPC+ +QG+VQ GSCRSL Subject 5651 LCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRSL 5812
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 6
Range 1: 5650 to 5823 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 57/58(98%) | 0/58(0%) | Minus/Plus |
Query 2 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 175 SYATEFSIGHSLGDAFWNLLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS Subject 5650 SYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 5823
Range 2: 5649 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 50/58(86%) | 0/58(0%) | Plus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 176 E RETSTRP+LNMTLMSS+AWRQKKSKTAD *GT+S+GSRFQKASPRE*P+ENSVA E Subject 5649 EKRETSTRPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSRFQKASPRE*PIENSVAYE 5822
Range 3: 5650 to 5820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 36/57(63%) | 0/57(0%) | Plus/Minus |
Query 5 KQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIR 175 ++GDFD T+LEHD DV * +ATEEI++ GL+RDR D +QIPEGV + +TD E SGIR Subject 5650 EEGDFDATKLEHDFDVL*SVATEEIKDSGLIRDRFDGEQIPEGVTERMTD*ELSGIR 5820
Range 4: 5652 to 5819 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 33/56(59%) | 0/56(0%) | Minus/Plus |
Query 6 LCH*ILHRSLPWRRLLESASDRLCPLPVRRFRFLLSPCIRRHQGHVQVGSCRSLPV 173 +CH*+L+RS RLLESA R+CPL +R FLLSP R HQ HVQ S RSLP+ Subject 5652 VCH*VLNRSFSR*RLLESAPHRICPLSIRCL*FLLSPRFRGHQSHVQAWSRRSLPL 5819
Range 5: 5654 to 5821 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 33/56(59%) | 0/56(0%) | Plus/Minus |
Query 4 KTGRLRHDPT*T*P*CLLMHGDRRNRKRRTGKGQSRSEAXXXXXXXXXXXXXIQWH 171 + GRLR D *T* *C L GDRRN+++R KGQ R ADSRRR + +DR R QWH Subject 5654 RRGRLRRDQA*T*L*CPLKRGDRRNQRQRIDKGQIRWGADSRRRHRENDRLRTQWH 5821
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 3
Range 1: 5591 to 5764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 55/58(95%) | 0/58(0%) | Minus/Plus |
Query 2 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 175 SYATEFSIGHSLGD+FWNLLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVE+SLFS Subject 5591 SYATEFSIGHSLGDSFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFS 5764
Range 2: 5590 to 5763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 45/58(78%) | 0/58(0%) | Plus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 176 E RE STRP+LN+TL+SS+A RQKKSKTAD GT+SIGS+FQK SPRE*P+ENSVA*E Subject 5590 EKREISTRPSLNITLISSEA*RQKKSKTAD*YGTDSIGSKFQKESPRE*PIENSVA*E 5763
Range 3: 5591 to 5761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 26/57(46%) | 0/57(0%) | Plus/Minus |
Query 5 KQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIR 175 ++ D D +LEH D+ + T+E+++ GL+R +D KQ+PEGV KGVT+ EF G+R Subject 5591 EERDLDAAELEHHFDILRSVTTKEVKDCGLIRHGLDWKQVPEGVTKGVTNREFGGVR 5761
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 5
Range 1: 5493 to 5666 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 54/58(93%) | 0/58(0%) | Minus/Plus |
Query 2 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 175 SYATEFSIGHSLGDAFWNLLPID+VP+QSAVFDFFCRHA ED+KVMFKLGRVEVSLFS Subject 5493 SYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFS 5666
Range 2: 5492 to 5665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 49/58(84%) | 0/58(0%) | Plus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 176 E R+TSTRPNLNMTL SS AWRQKKSKTADW GT S+G RFQKASPRE PMENSVA*E Subject 5492 EKRDTSTRPNLNMTLTSSGAWRQKKSKTADWNGTASMGRRFQKASPREWPMENSVA*E 5665
Range 3: 5493 to 5666 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 31/58(53%) | 0/58(0%) | Plus/Minus |
Query 2 GKQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIR 175 G++ F+ TQLEHD D+ +A EE+E+GGL D +D ++IP+GVA+GV +GEF GIR Subject 5493 GEERHFNATQLEHDFDILRRVAAEEVEDGGLEWDSIDGEEIPKGVAEGVANGEFGGIR 5666
Range 4: 5492 to 5644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 33/51(65%) | 0/51(0%) | Minus/Plus |
Query 24 FLCH*ILHRSLPWRRLLESASDRLCPLPVRRFRFLLSPCIRRHQGHVQVGS 176 FLCH ILH LP RRLLES R CP+PVRR R LL P Q HVQVGS Subject 5492 FLCHRILHWPLPRRRLLESPPHRCCPIPVRRLRLLLPPRA*GCQSHVQVGS 5644
Nucleotide Sequence (194 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
152.7 | 586.0 | 54% | 3.817e-36 | 59% | KY513701.1 | |
152.7 | 586.0 | 54% | 3.817e-36 | 59% | NC_034205.1 | |
150.9 | 482.3 | 32% | 1.36e-35 | 48% | KY513702.1 | |
149.5 | 538.8 | 51% | 3.526e-35 | 51% | KX828705.1 | |
144.5 | 596.1 | 52% | 1.16e-33 | 63% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 6
Range 1: 5586 to 5771 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 62/62(100%) | 0/62(0%) | Minus/Plus |
Query 3 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE 188 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE Subject 5586 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE 5771
Range 2: 5585 to 5773 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 55/63(87%) | 0/63(0%) | Plus/Minus |
Query 1 SSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTISLAKSAT 189 SS+AWRQKKSKTADW GTES+GSRFQKASPRE PMENSVA*E SFSS+VPSST TISLAK AT Subject 5585 SSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRAT 5773
Range 3: 5581 to 5763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 36/61(59%) | 0/61(0%) | Plus/Minus |
Query 11 HGDRRSRKRRTGKGQSRSEADSRRHRQGSDRWRIQWHKKEASHQWCHHQRKPLAWRRVQPS 193 HGDRRS++ TG G S ADSR+H + S RWR QWHK+ ASHQ CH QR P AW+R +P+ Subject 5581 HGDRRSQRPLTGMGLSLWGADSRKHHRESGRWRTQWHKRAASHQ*CHRQRIPSAWQRERPA 5763
Range 4: 5585 to 5767 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 37/61(61%) | 0/61(0%) | Minus/Plus |
Query 7 GCTLRQANGLR**WHH**EASFLCH*ILHRSLPWRCLLESASDRLCPLPVRRFRLLLSPCI 189 G +L QA+G+R* WH+**EA+ LCH*+LHR L C LESA RL P+PV LLLSPC+ Subject 5585 GRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCL 5767
Range 5: 5583 to 5762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 36/60(60%) | 0/60(0%) | Plus/Minus |
Query 12 MATEEVENGGLVRDRVDRKQIPEGIAKGVTDGEFSGIRKKLLINGAIINANH*LGEECNR 191 MATEEV++ LV D V +QIPE I + V DGE SGIR++LLIN AI+NA H LG+E +R Subject 5583 MATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDR 5762
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 6
Range 1: 5586 to 5771 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 62/62(100%) | 0/62(0%) | Minus/Plus |
Query 3 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE 188 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE Subject 5586 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE 5771
Range 2: 5585 to 5773 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 55/63(87%) | 0/63(0%) | Plus/Minus |
Query 1 SSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTISLAKSAT 189 SS+AWRQKKSKTADW GTES+GSRFQKASPRE PMENSVA*E SFSS+VPSST TISLAK AT Subject 5585 SSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRAT 5773
Range 3: 5581 to 5763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 36/61(59%) | 0/61(0%) | Plus/Minus |
Query 11 HGDRRSRKRRTGKGQSRSEADSRRHRQGSDRWRIQWHKKEASHQWCHHQRKPLAWRRVQPS 193 HGDRRS++ TG G S ADSR+H + S RWR QWHK+ ASHQ CH QR P AW+R +P+ Subject 5581 HGDRRSQRPLTGMGLSLWGADSRKHHRESGRWRTQWHKRAASHQ*CHRQRIPSAWQRERPA 5763
Range 4: 5585 to 5767 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 37/61(61%) | 0/61(0%) | Minus/Plus |
Query 7 GCTLRQANGLR**WHH**EASFLCH*ILHRSLPWRCLLESASDRLCPLPVRRFRLLLSPCI 189 G +L QA+G+R* WH+**EA+ LCH*+LHR L C LESA RL P+PV LLLSPC+ Subject 5585 GRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCL 5767
Range 5: 5583 to 5762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 36/60(60%) | 0/60(0%) | Plus/Minus |
Query 12 MATEEVENGGLVRDRVDRKQIPEGIAKGVTDGEFSGIRKKLLINGAIINANH*LGEECNR 191 MATEEV++ LV D V +QIPE I + V DGE SGIR++LLIN AI+NA H LG+E +R Subject 5583 MATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDR 5762
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 5
Range 1: 5587 to 5772 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.9 bits(323) | 0.0 | 61/62(98%) | 0/62(0%) | Minus/Plus |
Query 3 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE 188 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPI+SVPYQSAVFDFFCRHASE Subject 5587 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHASE 5772
Range 2: 5586 to 5774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 54/63(86%) | 0/63(0%) | Plus/Minus |
Query 1 SSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTISLAKSAT 189 SS+AWRQKKSKTAD *GT+S+GSRFQKASPRE*P+ENSVA E SFSSMVPSSTQT+SLA SAT Subject 5586 SSEAWRQKKSKTAD**GTDSMGSRFQKASPRE*PIENSVAYESSFSSMVPSSTQTMSLANSAT 5774
Range 3: 5593 to 5763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 29/57(51%) | 0/57(0%) | Plus/Minus |
Query 12 MATEEVENGGLVRDRVDRKQIPEGIAKGVTDGEFSGIRKKLLINGAIINANH*LGEE 182 +ATEE+++ GL+RDR D +QIPEG+ + +TD E SGIR++LL++GA+++ +H GE+ Subject 5593 VATEEIKDSGLIRDRFDGEQIPEGVTERMTD*ELSGIREQLLVDGAVVHTDHEFGEQ 5763
Range 4: 5597 to 5770 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 28/58(48%) | 0/58(0%) | Plus/Minus |
Query 5 LMHGDRRSRKRRTGKGQSRSEADSRRHRQGSDRWRIQWHKKEASHQWCHHQRKPLAWR 178 L GDRR++++R KGQ R ADSRR + +DR R QWH + AS +WC +P WR Subject 5597 LKRGDRRNQRQRIDKGQIRWGADSRRRHRENDRLRTQWHTRAASRRWCRRPHRP*VWR 5770
Range 5: 5595 to 5771 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 29/59(49%) | 0/59(0%) | Minus/Plus |
Query 4 LRQANGLR**WHH**EASFLCH*ILHRSLPWRCLLESASDRLCPLPVRRFRLLLSPCIR 180 +RQ +GL HH EA+ +CH*+L+RS LLESA R+CPL +R LLSP R Subject 5595 VRQTHGLCGRRHHRREAALVCH*VLNRSFSR*RLLESAPHRICPLSIRCL*FLLSPRFR 5771
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 6
Range 1: 5528 to 5713 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 60/62(97%) | 0/62(0%) | Minus/Plus |
Query 3 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE 188 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGD+FWNLLPI+SVPYQSAVFDFFCRHASE Subject 5528 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDSFWNLLPIESVPYQSAVFDFFCRHASE 5713
Range 2: 5527 to 5715 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 54/63(86%) | 0/63(0%) | Plus/Minus |
Query 1 SSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTISLAKSAT 189 SS+A RQKKSKTAD GT+SIGS+FQK SPRE*P+ENSVA*ERSFSSMVPSSTQT+SLAKSAT Subject 5527 SSEA*RQKKSKTAD*YGTDSIGSKFQKESPRE*PIENSVA*ERSFSSMVPSSTQTMSLAKSAT 5715
Range 3: 5534 to 5704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 31/57(54%) | 0/57(0%) | Plus/Minus |
Query 12 MATEEVENGGLVRDRVDRKQIPEGIAKGVTDGEFSGIRKKLLINGAIINANH*LGEE 182 + T+EV++ GL+R +D KQ+PEG+ KGVT+ EF G+R++LLINGAI++ NH LG++ Subject 5534 VTTKEVKDCGLIRHGLDWKQVPEGVTKGVTNREFGGVREELLINGAIVHTNHELGKK 5704
Range 4: 5529 to 5699 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 29/57(51%) | 0/57(0%) | Plus/Minus |
Query 17 DRRSRKRRTGKGQSRSEADSRRHRQGSDRWRIQWHKKEASHQWCHHQRKPLAWRRVQ 187 D+RS++ R ++R EA SRR QGSD+ RI+W K+ ASHQWCH KP AW++ + Subject 5529 DKRSQRLRIDTARTRLEASSRRSHQGSDQ*RIRWRKRGASHQWCHRPHKP*AWQKAR 5699
Range 5: 5542 to 5700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 30/53(57%) | 0/53(0%) | Minus/Plus |
Query 16 QANGLR**WHH**EASFLCH*ILHRSLPWRCLLESASDRLCPLPVRRFRLLLS 174 QA+GL WHH**EA L H IL+ SLPW LLE AS+R+ + +R LLLS Subject 5542 QAHGLCGRWHH**EAPLLRHRILYWSLPW*LLLELASNRVRAVSIRSL*LLLS 5700
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 6
Range 1: 639 to 824 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 56/62(90%) | 0/62(0%) | Minus/Plus |
Query 3 VALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASE 188 VALFAKLMVCVDDGTIDEK++SYATEFSIGHSLGDAFWNLLP+++VPYQSAVFDFFCRHA E Subject 639 VALFAKLMVCVDDGTIDEKMISYATEFSIGHSLGDAFWNLLPLEAVPYQSAVFDFFCRHAPE 824
Range 2: 638 to 826 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 54/63(86%) | 0/63(0%) | Plus/Minus |
Query 1 SSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTISLAKSAT 189 SS AWRQKKSKTADW*GT S G RFQKASPRE PMENSVA*E FSSMVPSSTQT+SLAK AT Subject 638 SSGAWRQKKSKTADW*GTASRGRRFQKASPRECPMENSVA*EIIFSSMVPSSTQTMSLAKRAT 826
Range 3: 646 to 816 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 37/57(65%) | 0/57(0%) | Plus/Minus |
Query 11 HGDRRSRKRRTGKGQSRSEADSRRHRQGSDRWRIQWHKKEASHQWCHHQRKPLAWRR 181 HG RRSRK TGK Q + E SRRHRQGS RWRI+WH+K HQWC QRKP AW++ Subject 646 HGGRRSRKPLTGKAQPQEEGGSRRHRQGSARWRIRWHRKSFFHQWCRRQRKP*AWQK 816
Range 4: 653 to 817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 38/55(69%) | 0/55(0%) | Minus/Plus |
Query 10 QANGLR**WHH**EASFLCH*ILHRSLPWRCLLESASDRLCPLPVRRFRLLLSPC 174 QA+GLR* HH**+ FLCH ILHR+LPWRCLLE S C LPV FRLLL PC Subject 653 QAHGLR*RRHH**KNDFLCHRILHRALPWRCLLEPPSS*GCALPVSGFRLLLPPC 817
Range 5: 645 to 815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 36/57(63%) | 0/57(0%) | Plus/Minus |
Query 12 MATEEVENGGLVRDRVDRKQIPEGIAKGVTDGEFSGIRKKLLINGAIINANH*LGEE 182 MA EEVEN LVR + RK++PEGIAKGV DGEF GI INGA++NANH LG++ Subject 645 MAAEEVENR*LVRHSLKRKEVPEGIAKGVPDGEFGGIGNHFFINGAVVNANHELGKK 815
Nucleotide Sequence (199 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
163.7 | 559.9 | 51% | 2.001e-39 | 57% | KY513701.1 | |
163.7 | 559.9 | 51% | 2.001e-39 | 57% | NC_034205.1 | |
160.5 | 580.5 | 53% | 1.848e-38 | 59% | KY513702.1 | |
160.1 | 560.5 | 27% | 2.539e-38 | 50% | KX828705.1 | |
146.3 | 465.4 | 28% | 3.722e-34 | 55% | AY706994.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 6
Range 1: 5676 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.7 bits(351) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 199 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML Subject 5676 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 5873
Range 2: 5678 to 5872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Minus |
Query 4 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLISSDAWRQKKSKTADW*GTESIGSRFQKASPRE 198 SME*VE +SQ+SL SR E ETSTRP+LN+TLISS+AWRQKKSKTADW GTES+GSRFQKASPRE Subject 5678 SME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPRE 5872
Range 3: 5677 to 5871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 37/65(57%) | 0/65(0%) | Minus/Minus |
Query 3 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*YLLMHGDRRSRKRRTGKGQSRSEADSRRHRQGS 197 AWS+WS A+ AC A R RLR DP *T*P*Y HGDRRS++ TG G S ADSR+H + S Subject 5677 AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMGLSLWGADSRKHHRES 5871
Range 4: 5676 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 38/66(58%) | 0/66(0%) | Minus/Minus |
Query 2 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDIF*CMATEEVENGGLVRDRVDRKQIPEGIAKGV 199 EHGV GV +P +LV+Q+ E+ DFD TQLEH+LDI MATEEV++ LV D V +QIPE I + V Subject 5676 EHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERV 5873
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 6
Range 1: 5676 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.7 bits(351) | 0.0 | 66/66(100%) | 0/66(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 199 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML Subject 5676 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 5873
Range 2: 5678 to 5872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Minus |
Query 4 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLISSDAWRQKKSKTADW*GTESIGSRFQKASPRE 198 SME*VE +SQ+SL SR E ETSTRP+LN+TLISS+AWRQKKSKTADW GTES+GSRFQKASPRE Subject 5678 SME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPRE 5872
Range 3: 5677 to 5871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 37/65(57%) | 0/65(0%) | Minus/Minus |
Query 3 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*YLLMHGDRRSRKRRTGKGQSRSEADSRRHRQGS 197 AWS+WS A+ AC A R RLR DP *T*P*Y HGDRRS++ TG G S ADSR+H + S Subject 5677 AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMGLSLWGADSRKHHRES 5871
Range 4: 5676 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 38/66(58%) | 0/66(0%) | Minus/Minus |
Query 2 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDIF*CMATEEVENGGLVRDRVDRKQIPEGIAKGV 199 EHGV GV +P +LV+Q+ E+ DFD TQLEH+LDI MATEEV++ LV D V +QIPE I + V Subject 5676 EHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERV 5873
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 6
Range 1: 5677 to 5874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 64/66(97%) | 0/66(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 199 HSLGDAFWNLLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLH+LSWLSYSTYSML Subject 5677 HSLGDAFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHRLSWLSYSTYSML 5874
Range 2: 5676 to 5873 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 54/66(82%) | 0/66(0%) | Minus/Minus |
Query 1 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLISSDAWRQKKSKTADW*GTESIGSRFQKASPRE* 198 SME*VE +SQ+SL S+*E RETSTRP+LNMTL+SS+AWRQKKSKTAD *GT+S+GSRFQKASPRE* Subject 5676 SME*VEYESQESL*SK*EKRETSTRPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSRFQKASPRE* 5873
Range 3: 5683 to 5874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 39/64(61%) | 0/64(0%) | Minus/Minus |
Query 8 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDIF*CMATEEVENGGLVRDRVDRKQIPEGIAK 199 EHGVSGV +P + V+Q+RE+GDFDAT+LEHD D+ * +ATEE+++ GL+RDR D +QIPEG+ + Subject 5683 EHGVSGV*EPGEPVKQVREEGDFDATKLEHDFDVL*SVATEEIKDSGLIRDRFDGEQIPEGVTE 5874
Range 4: 5684 to 5872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 37/63(59%) | 0/63(0%) | Minus/Minus |
Query 9 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*YLLMHGDRRSRKRRTGKGQSRSEADSRRHRQ 197 AWSKWS A+ AC A ER GRLRRD *T* * L GDRR++++R KGQ R ADSRR + Subject 5684 AWSKWSMRARRACEASERRGRLRRDQA*T*L*CPLKRGDRRNQRQRIDKGQIRWGADSRRRHR 5872
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 7
Range 1: 5618 to 5815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 63/66(95%) | 0/66(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 199 HSLGD+FWNLLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVE+SLFSHLLHKLSWLSYSTYSML Subject 5618 HSLGDSFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSML 5815
Range 2: 5617 to 5814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 53/66(80%) | 0/66(0%) | Minus/Minus |
Query 1 SME*VE*DSQDSLWSR*ENRETSTRPNLNMTLISSDAWRQKKSKTADW*GTESIGSRFQKASPRE* 198 SME*VE*DSQ+SL SR*E RE STRP+LN+TLISS+A RQKKSKTAD GT+SIGS+FQK SPRE* Subject 5617 SME*VE*DSQESL*SR*EKREISTRPSLNITLISSEA*RQKKSKTAD*YGTDSIGSKFQKESPRE* 5814
Range 3: 5618 to 5815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 38/66(58%) | 0/66(0%) | Minus/Minus |
Query 2 EHGVSGVGQPRQLVEQMREQGDFDATQLEHDLDIF*CMATEEVENGGLVRDRVDRKQIPEGIAKGV 199 EHGVSGV QP +LV+QMRE+ D DA +LEH DI + T+EV++ GL+R +D KQ+PEG+ KGV Subject 5618 EHGVSGVRQPGELVKQMREERDLDAAELEHHFDILRSVTTKEVKDCGLIRHGLDWKQVPEGVTKGV 5815
Range 4: 5619 to 5813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 34/65(52%) | 0/65(0%) | Minus/Minus |
Query 3 AWSKWSRTAKTACGADERTGRLRRDPT*T*P*YLLMHGDRRSRKRRTGKGQSRSEADSRRHRQGS 197 AWSKWS+TA+ AC ADER R RR *T *Y D+RS++ R ++R EA SRR QGS Subject 5619 AWSKWSKTARRACEADERRERSRRGRA*TSL*YPQKRDDKRSQRLRIDTARTRLEASSRRSHQGS 5813
Range 5: 5712 to 5813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 22/34(65%) | 0/34(0%) | Plus/Plus |
Query 96 KISRSCSSWVASKSPCSLICSTSCLGCPTPLTPC 197 +IS+ CSS AS+S SLIC TS GC TPLTPC Subject 5712 RISK*CSSSAASRSLSSLICFTSSPGCLTPLTPC 5813
Range 6: 5619 to 5654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 8/12(67%) | 0/12(0%) | Plus/Plus |
Query 3 TPLAMPSGICFR 38 TPL PSG CF+ Subject 5619 TPLVTPSGTCFQ 5654
Range 7: 5617 to 5778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 27/54(50%) | 0/54(0%) | Plus/Plus |
Query 1 SLPWRCLLESASDRLCPLPVRRFRLLLSPCIRRYQGHVQVGSRRSLPVLSSAPQ 162 SLPW LLE AS+R+ + +R LLLS YQ VQ RR L +LSSA Q Subject 5617 SLPW*LLLELASNRVRAVSIRSL*LLLSSRF*GYQSDVQARPRRDLSLLSSASQ 5778
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 5
Range 1: 5520 to 5717 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 57/66(86%) | 0/66(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSML 199 HSLGDAFWNLLPID+VP+QSAVFDFFCRHA ED+KVMFKLGRVEVSLFSHLL KL+WLSYS+Y+ L Subject 5520 HSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFSHLLSKLTWLSYSSYAYL 5717
Range 2: 5522 to 5701 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 47/60(78%) | 0/60(0%) | Minus/Minus |
Query 4 E*DSQDSLWSR*ENRETSTRPNLNMTLISSDAWRQKKSKTADW*GTESIGSRFQKASPRE 183 E +SQ SL SR E R+TSTRPNLNMTL SS AWRQKKSKTADW GT S+G RFQKASPRE Subject 5522 EYESQVSLESRWEKRDTSTRPNLNMTLTSSGAWRQKKSKTADWNGTASMGRRFQKASPRE 5701
Range 3: 5520 to 5711 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 35/64(55%) | 0/64(0%) | Minus/Minus |
Query 2 GVSGVGQPRQLVEQMREQGDFDATQLEHDLDIF*CMATEEVENGGLVRDRVDRKQIPEGIAKGV 193 G+ GV +P +L EQM E+ F+ATQLEHD DI +A EEVE+GGL D +D ++IP+G+A+GV Subject 5520 GIGGVREPSELGEQMGEERHFNATQLEHDFDILRRVAAEEVEDGGLEWDSIDGEEIPKGVAEGV 5711
Range 4: 5521 to 5700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 34/60(57%) | 0/60(0%) | Minus/Minus |
Query 3 SRTAKTACGADERTGRLRRDPT*T*P*YLLMHGDRRSRKRRTGKGQSRSEADSRRHRQGS 182 S AK A AD R L+RDPT*T* *+ G RRSR+RRTG GQ R DS+R R+GS Subject 5521 STRAK*AWRADGRRETLQRDPT*T*L*HPQARGGRRSRRRRTGMGQHRWGGDSKRRRRGS 5700
Range 5: 5522 to 5680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 32/53(60%) | 0/53(0%) | Plus/Plus |
Query 4 LPWRCLLESASDRLCPLPVRRFRLLLSPCIRRYQGHVQVGSRRSLPVLSSAPQ 162 LP R LLES R CP+PVRR RLLL P Q HVQVGSR S+ +L SA Q Subject 5522 LPRRRLLESPPHRCCPIPVRRLRLLLPPRA*GCQSHVQVGSR*SVSLLPSALQ 5680
Nucleotide Sequence (199 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
156.4 | 441.4 | 32% | 3.437e-37 | 58% | KY513701.1 | |
156.4 | 441.4 | 32% | 3.437e-37 | 58% | NC_034205.1 | |
154.6 | 506.6 | 26% | 1.224e-36 | 56% | KY513702.1 | |
152.7 | 445.7 | 19% | 4.362e-36 | 47% | KX828705.1 | |
146.8 | 476.4 | 23% | 2.709e-34 | 52% | AY706994.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 4
Range 1: 5625 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Plus |
Query 1 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVSYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 198 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS Subject 5625 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 5822
Range 2: 5627 to 5821 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*ETESIGSRFQKASPRE*PMENSVA*ERSFSSMV 197 E ETSTRP+LN+TL+SS+AWRQKKSKTADW TES+GSRFQKASPRE PMENSVA*E SFSS+V Subject 5627 EKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIV 5821
Range 3: 5625 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 38/66(58%) | 0/66(0%) | Minus/Minus |
Query 1 GKQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGA 198 G++ DFDTTQLEH+LD+ MATEE+++ LV D V +QIPE + + V DGE SGIR++LLIN A Subject 5625 GEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSA 5822
Range 4: 5627 to 5812 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 36/62(58%) | 0/62(0%) | Plus/Plus |
Query 3 HH**EASFLCH*ILHRSLPWRRLLESASDRLCLLPVRRFRFLLSPCIRRHQGHVQVGSCRSL 188 H+**EA+ LCH*+LHR L LESA RL +PV LLSPC+ +QG+VQ GSCRSL Subject 5627 HY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRSL 5812
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 4
Range 1: 5625 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Plus |
Query 1 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVSYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 198 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS Subject 5625 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 5822
Range 2: 5627 to 5821 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*ETESIGSRFQKASPRE*PMENSVA*ERSFSSMV 197 E ETSTRP+LN+TL+SS+AWRQKKSKTADW TES+GSRFQKASPRE PMENSVA*E SFSS+V Subject 5627 EKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIV 5821
Range 3: 5625 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 38/66(58%) | 0/66(0%) | Minus/Minus |
Query 1 GKQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGA 198 G++ DFDTTQLEH+LD+ MATEE+++ LV D V +QIPE + + V DGE SGIR++LLIN A Subject 5625 GEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSA 5822
Range 4: 5627 to 5812 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 36/62(58%) | 0/62(0%) | Plus/Plus |
Query 3 HH**EASFLCH*ILHRSLPWRRLLESASDRLCLLPVRRFRFLLSPCIRRHQGHVQVGSCRSL 188 H+**EA+ LCH*+LHR L LESA RL +PV LLSPC+ +QG+VQ GSCRSL Subject 5627 HY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRSL 5812
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 5
Range 1: 5626 to 5823 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.6 bits(331) | 0.0 | 64/66(97%) | 0/66(0%) | Plus/Plus |
Query 1 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVSYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 198 GTIDEKLLSYATEFSIGHSLGDAFWNLLPI+SV YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS Subject 5626 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 5823
Range 2: 5628 to 5822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 55/65(85%) | 0/65(0%) | Minus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*ETESIGSRFQKASPRE*PMENSVA*ERSFSSMV 197 E RETSTRP+LNMTLMSS+AWRQKKSKTAD * T+S+GSRFQKASPRE*P+ENSVA E SFSSMV Subject 5628 EKRETSTRPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSRFQKASPRE*PIENSVAYESSFSSMV 5822
Range 3: 5626 to 5820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 40/65(62%) | 0/65(0%) | Minus/Minus |
Query 1 KQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGA 195 ++GDFD T+LEHD DV * +ATEEI++ GL+RDR D +QIPEGV + +TD E SGIR++LL++GA Subject 5626 EEGDFDATKLEHDFDVL*SVATEEIKDSGLIRDRFDGEQIPEGVTERMTD*ELSGIREQLLVDGA 5820
Range 4: 5628 to 5819 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 36/64(56%) | 0/64(0%) | Plus/Plus |
Query 3 HH**EASFLCH*ILHRSLPWRRLLESASDRLCLLPVRRFRFLLSPCIRRHQGHVQVGSCRSLPV 194 HH EA+ +CH*+L+RS RLLESA R+C L +R FLLSP R HQ HVQ S RSLP+ Subject 5628 HHRREAALVCH*VLNRSFSR*RLLESAPHRICPLSIRCL*FLLSPRFRGHQSHVQAWSRRSLPL 5819
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 5
Range 1: 5567 to 5764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 62/66(94%) | 0/66(0%) | Plus/Plus |
Query 1 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVSYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 198 GTIDEKLLSYATEFSIGHSLGD+FWNLLPI+SV YQSAVFDFFCRHASEDIKVMFKLGRVE+SLFS Subject 5567 GTIDEKLLSYATEFSIGHSLGDSFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFS 5764
Range 2: 5569 to 5763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 51/65(78%) | 0/65(0%) | Minus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*ETESIGSRFQKASPRE*PMENSVA*ERSFSSMV 197 E RE STRP+LN+TL+SS+A RQKKSKTAD T+SIGS+FQK SPRE*P+ENSVA*ERSFSSMV Subject 5569 EKREISTRPSLNITLISSEA*RQKKSKTAD*YGTDSIGSKFQKESPRE*PIENSVA*ERSFSSMV 5763
Range 3: 5567 to 5761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 32/65(49%) | 0/65(0%) | Minus/Minus |
Query 1 KQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGA 195 ++ D D +LEH D+ + T+E+++ GL+R +D KQ+PEGV KGVT+ EF G+R++LLINGA Subject 5567 EERDLDAAELEHHFDILRSVTTKEVKDCGLIRHGLDWKQVPEGVTKGVTNREFGGVREELLINGA 5761
Range 4: 5569 to 5754 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 29/62(47%) | 0/62(0%) | Plus/Plus |
Query 3 HH**EASFLCH*ILHRSLPWRRLLESASDRLCLLPVRRFRFLLSPCIRRHQGHVQVGSCRSL 188 HH**EA L H IL+ SLPW LLE AS+R+ + +R LLS +Q VQ R L Subject 5569 HH**EAPLLRHRILYWSLPW*LLLELASNRVRAVSIRSL*LLLSSRF*GYQSDVQARPRRDL 5754
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 5
Range 1: 5469 to 5666 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 58/66(88%) | 0/66(0%) | Plus/Plus |
Query 1 GTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVSYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFS 198 GTI+EK++SYATEFSIGHSLGDAFWNLLPID+V +QSAVFDFFCRHA ED+KVMFKLGRVEVSLFS Subject 5469 GTIEEKMISYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFS 5666
Range 2: 5471 to 5665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Minus |
Query 3 ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*ETESIGSRFQKASPRE*PMENSVA*ERSFSSMV 197 E R+TSTRPNLNMTL SS AWRQKKSKTADW T S+G RFQKASPRE PMENSVA*E FSSMV Subject 5471 EKRDTSTRPNLNMTLTSSGAWRQKKSKTADWNGTASMGRRFQKASPREWPMENSVA*EIIFSSMV 5665
Range 3: 5469 to 5666 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 34/66(52%) | 0/66(0%) | Minus/Minus |
Query 1 GKQGDFDTTQLEHDLDVF*CMATEEIENGGLVRDRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGA 198 G++ F+ TQLEHD D+ +A EE+E+GGL D +D ++IP+GVA+GV +GEF GIR L ++GA Subject 5469 GEERHFNATQLEHDFDILRRVAAEEVEDGGLEWDSIDGEEIPKGVAEGVANGEFGGIRNHLFLDGA 5666
Range 4: 5471 to 5644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 34/58(59%) | 0/58(0%) | Plus/Plus |
Query 3 HH**EASFLCH*ILHRSLPWRRLLESASDRLCLLPVRRFRFLLSPCIRRHQGHVQVGS 176 HH + FLCH ILH LP RRLLES R C +PVRR R LL P Q HVQVGS Subject 5471 HHRGKDDFLCHRILHWPLPRRRLLESPPHRCCPIPVRRLRLLLPPRA*GCQSHVQVGS 5644
Nucleotide Sequence (115 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
98.2 | 225.0 | 41% | 5.874e-20 | 58% | KY513701.1 | |
98.2 | 225.0 | 41% | 5.874e-20 | 58% | NC_034205.1 | |
96.4 | 232.3 | 37% | 2.093e-19 | 58% | KY513702.1 | |
95.0 | 207.1 | 34% | 5.426e-19 | 47% | KX828705.1 | |
94.1 | 219.5 | 33% | 1.024e-18 | 50% | KX756274.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 3
Range 1: 5676 to 5789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 38/38(100%) | 0/38(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 115 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF Subject 5676 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 5789
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 3
Range 1: 5676 to 5789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 38/38(100%) | 0/38(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 115 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF Subject 5676 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 5789
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 3
Range 1: 5677 to 5790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 37/38(97%) | 0/38(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 115 HSLGDAFWNLLPI+SVPYQSAVFDFFCRHASEDIKVMF Subject 5677 HSLGDAFWNLLPIESVPYQSAVFDFFCRHASEDIKVMF 5790
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 3
Range 1: 5618 to 5731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 36/38(95%) | 0/38(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 115 HSLGD+FWNLLPI+SVPYQSAVFDFFCRHASEDIKVMF Subject 5618 HSLGDSFWNLLPIESVPYQSAVFDFFCRHASEDIKVMF 5731
Grapevine rupestris vein feathering virus isolate TLF polyprotein gene, partial cds
Sequence ID: KX756274.1 Length: 491 Number of Matches: 3
Range 1: 197 to 310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 35/38(92%) | 0/38(0%) | Plus/Plus |
Query 2 HSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 115 HSLGDAFWNLLPID+VPYQSAVFDFFCRHA ED+KVMF Subject 197 HSLGDAFWNLLPIDAVPYQSAVFDFFCRHAPEDVKVMF 310
Nucleotide Sequence (142 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
118.8 | 329.1 | 33% | 4.043e-26 | 55% | KY513701.1 | |
118.8 | 329.1 | 33% | 4.043e-26 | 55% | NC_034205.1 | |
117.0 | 341.1 | 33% | 1.44e-25 | 57% | KY513702.1 | |
115.6 | 258.4 | 33% | 3.734e-25 | 51% | KX828705.1 | |
112.9 | 338.8 | 34% | 2.511e-24 | 57% | AY706994.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 4
Range 1: 5649 to 5789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 47/47(100%) | 0/47(0%) | Minus/Plus |
Query 1 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 141 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF Subject 5649 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 5789
Range 2: 5648 to 5788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 41/47(87%) | 0/47(0%) | Plus/Minus |
Query 2 NMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 142 N+TL+SS+AWRQKKSKTADW GTES+GSRFQKASPRE PMENSVA*E Subject 5648 NITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*E 5788
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 4
Range 1: 5649 to 5789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 47/47(100%) | 0/47(0%) | Minus/Plus |
Query 1 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 141 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF Subject 5649 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 5789
Range 2: 5648 to 5788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 41/47(87%) | 0/47(0%) | Plus/Minus |
Query 2 NMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 142 N+TL+SS+AWRQKKSKTADW GTES+GSRFQKASPRE PMENSVA*E Subject 5648 NITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*E 5788
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 4
Range 1: 5650 to 5790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 46/47(98%) | 0/47(0%) | Minus/Plus |
Query 1 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 141 SYATEFSIGHSLGDAFWNLLPI+SVPYQSAVFDFFCRHASEDIKVMF Subject 5650 SYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHASEDIKVMF 5790
Range 2: 5649 to 5789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 41/47(87%) | 0/47(0%) | Plus/Minus |
Query 2 NMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 142 NMTLMSS+AWRQKKSKTAD *GT+S+GSRFQKASPRE*P+ENSVA E Subject 5649 NMTLMSSEAWRQKKSKTAD**GTDSMGSRFQKASPRE*PIENSVAYE 5789
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 3
Range 1: 5591 to 5731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 45/47(96%) | 0/47(0%) | Minus/Plus |
Query 1 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 141 SYATEFSIGHSLGD+FWNLLPI+SVPYQSAVFDFFCRHASEDIKVMF Subject 5591 SYATEFSIGHSLGDSFWNLLPIESVPYQSAVFDFFCRHASEDIKVMF 5731
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 4
Range 1: 5493 to 5633 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 43/47(91%) | 0/47(0%) | Minus/Plus |
Query 1 SYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMF 141 SYATEFSIGHSLGDAFWNLLPID+VP+QSAVFDFFCRHA ED+KVMF Subject 5493 SYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPEDVKVMF 5633
Range 2: 5492 to 5632 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 40/47(85%) | 0/47(0%) | Plus/Minus |
Query 2 NMTLMSSDAWRQKKSKTADW*GTESIGSRFQKASPRE*PMENSVA*E 142 NMTL SS AWRQKKSKTADW GT S+G RFQKASPRE PMENSVA*E Subject 5492 NMTLTSSGAWRQKKSKTADWNGTASMGRRFQKASPREWPMENSVA*E 5632
Nucleotide Sequence (432 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
328.2 | 1242.0 | 16% | 3.564e-88 | 61% | KY513702.1 | |
327.3 | 1223.2 | 20% | 6.726e-88 | 61% | KX828705.1 | |
327.3 | 1152.2 | 24% | 6.726e-88 | 53% | KY513701.1 | |
327.3 | 1152.2 | 24% | 6.726e-88 | 53% | NC_034205.1 | |
323.6 | 1157.9 | 20% | 8.536e-87 | 52% | AY706994.1 |
Alignments
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 8
Range 1: 3388 to 3789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
328.2 bits(710) | 0.0 | 133/134(99%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN Subject 3388 GCGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 3789
Range 2: 3399 to 3791 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.4 bits(586) | 0.0 | 122/131(93%) | 0/131(0%) | Minus/Minus |
Query 40 TLRGMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 432 TLRG+RWDHRQYMSM GWRCLISLERRALLE GLVE YSP* GSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVF S Q+G D Subject 3399 TLRGIRWDHRQYMSMKGWRCLISLERRALLELGLVE*YSP*SGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFSSWQIGYD 3791
Range 3: 3386 to 3790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 84/135(62%) | 0/135(0%) | Minus/Minus |
Query 27 RCEECGGTIGSTCP*MVGDA*SRWRDGHCWNLD*WSGTHLEEXXXXXXXXXRCCPHEWLGPGSLEEACRPRQ*RLCEQI*AERTPRFPVSNDQQAKT*GSPSIHCGAQQLGRLSCNCDRAWSSEADRWGKTSRRR 431 RC GT GSTCP* GDA*SRWR GHCW+ D WS THLE G GR*+AG+CC EW GPGS ACR R+*R CE+ *AE+TP+F VS+D++A+T* S SIHCGAQ SCNC +AWSS A R G T R Subject 3386 RCGGSDGTTGSTCP*RAGDA*SRWRGGHCWSWDWWSDTHLEVGHPGR*RAGQCCQREWRGPGSRGGACRLRR*RRCERT*AEKTPKFRVSSDRRART*ESLSIHCGAQPWEPRSCNCGKAWSSAAGRLGTTCHTR 3790
Range 4: 3397 to 3789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 85/131(65%) | 0/131(0%) | Minus/Minus |
Query 38 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRL 430 VA + +GP AVHVHE LEMLDLAGE GIAG+ I GV+LTLK V +DDE+LG AV +NG VQVA+ +LVD V+DD AS EQR LP S+SP I R LE V PFIAELN + LVIA LGLQ+L D VRL Subject 3397 VAGDPMGPQAVHVHEGLEMLDLAGEAGIAGVGIGGVILTLKWVTQDDEELGSAVSVNGEVQVAAGELVDFVDDDDASGLEQRRLPSSESPAIGGRGLERVFPFIAELNRGNRDLVIAARLGLQQLADWVRL 3789
Range 5: 3381 to 3623 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 52/81(64%) | 0/81(0%) | Plus/Plus |
Query 22 LARRREVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHS 264 L R +V+P+L A+EDQAL QLQD + *APQ*ME L QV A SLET NLGV SAQ+ SH RH R LQA RLPGP HS Subject 3381 LRRVWQVVPNLPAAEDQALPQLQDRGSHG*APQ*MERLSQVLARRSLETRNLGVFSAQVRSHRRHRRSLQAPPRLPGPRHS 3623
Range 6: 3671 to 3790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 28/40(70%) | 0/40(0%) | Plus/Plus |
Query 312 KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAFLAT 431 KVS TP I PAMP SPARSSIS+ SWTCTA GP AT Subject 3671 KVSITPPIPTPAMPASPARSSISSPSWTCTACGPIGSPAT 3790
Range 7: 3696 to 3791 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 22/32(69%) | 0/32(0%) | Plus/Plus |
Query 337 KFQQCPSLQRDQASPTIHGHVLPMVPPHSSQR 432 + QQCP LQRDQASP +HGHVLP+VP QR Subject 3696 QLQQCPPLQRDQASPALHGHVLPVVPSDPPQR 3791
Range 8: 3398 to 3550 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 31/51(61%) | 0/51(0%) | Plus/Plus |
Query 39 SLTPSVSF*RPSPVAITR*PSQLLSSAMNGRTPSSLRLLIVGDWEPGSPLC 191 S T S S *RPS AITR LSSAMNG+T SS R I GD E GS LC Subject 3398 SRTQSASC*RPSLAAITRSRFPRLSSAMNGKTLSSPRPPIAGDSELGSLLC 3550
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 8
Range 1: 3329 to 3730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 132/134(99%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYC+WSHRIPRN Subject 3329 GCGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCMWSHRIPRN 3730
Range 2: 3340 to 3732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.9 bits(574) | 0.0 | 120/131(92%) | 0/131(0%) | Minus/Minus |
Query 40 TLRGMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 432 TLRG+RWDH QYMSM G RC ISLE RALLE GLVEWYSP*RGSP TMKSWAVLSA*MARSR*P GSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS Q+G*D Subject 3340 TLRGIRWDHMQYMSMKG*RCFISLESRALLELGLVEWYSP*RGSPSTMKSWAVLSA*MARSR*PLGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRSWQIG*D 3732
Range 3: 3329 to 3730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 85/134(63%) | 0/134(0%) | Minus/Minus |
Query 29 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA 430 VAR+ VGP AVHVHE L++L AGE G+AGI ISGVVL LKRVA+ +E+LGGAV MNG +QV +LVDLV+DD A EQRGLPG++SP IS R LE VLPFIA+L+ D V+A GLG Q+L D VRL A+ Subject 3329 VARDPVGPHAVHVHEGLKVLYFAGEPGVAGIRISGVVLALKRVAQHNEELGGAVGMNGQIQVTPGELVDLVDDDNAGGLEQRGLPGAESPAISGRGLERVLPFIAKLHRGDRDFVVAAGLGFQELADRVRLTAS 3730
Range 4: 3333 to 3731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 82/133(62%) | 0/133(0%) | Minus/Minus |
Query 33 RCEECGGTIGSTCP*MVGDA*SRWRDGHCWNLD*WSGTHLEEXXXXXXXXXRCCPHEWLGPGSLEEACRPRQ*RLCEQI*AERTPRFPVSNDQQAKT*GSPSIHCGAQQLGRLSCNCDRAWSSEADRWGKTSR 431 RCE GGT STCP* A RWR G CWN D*WSGT LEEGR +*+ GRCC HEW PG+ ACRPR+*R C + *AERTPR VS+DQ+A+T* SPSIHC A G C+C RAW S A R GKT R Subject 3333 RCEGSGGTTCSTCP*RAEGALFRWRAGRCWN*D*WSGTRLEEGRPAQ*RVGRCCRHEWPDPGNPWGACRPRR*RQCGRT*AERTPRCRVSSDQRART*ESPSIHCEAPPWGPRFCSCGRAWFSGAGRSGKTYR 3731
Range 5: 3334 to 3573 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 51/80(64%) | 0/80(0%) | Plus/Plus |
Query 34 REVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSCGQ 273 R VLP L A E+QAL QLQ+ P+ A Q*MEGL QV A *SLET +LGVLSAQ+ H RH RGLQA LPG HSC Q Subject 3334 R*VLPDLPAPENQALPQLQNRGPHGGASQ*MEGLSQVLAR*SLETRHLGVLSAQVRPHCRHRRGLQAPQGLPGSGHSCRQ 3573
Range 6: 3612 to 3731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 27/40(68%) | 0/40(0%) | Plus/Plus |
Query 312 KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAFLAT 431 K STTPLI IPA P SPA+ S + SWTCTA GPT LAT Subject 3612 KASTTPLILIPATPGSPAK*STFSPSWTCTACGPTGSLAT 3731
Range 7: 3333 to 3491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 33/53(62%) | 0/53(0%) | Plus/Plus |
Query 33 AGSLTPSVSF*RPSPVAITR*PSQLLSSAMNGRTPSSLRLLIVGDWEPGSPLC 191 A SLT S S *+PSP A T+ S S AMNGRT SS R LI GD PGSPLC Subject 3333 AVSLTRSASS*KPSPAATTKSRSPRWSFAMNGRTLSSPRPLIAGDSAPGSPLC 3491
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 8
Range 1: 3387 to 3788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 132/134(99%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYC+WSHRIPRN Subject 3387 GCGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCMWSHRIPRN 3788
Range 2: 3398 to 3790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 117/131(89%) | 0/131(0%) | Minus/Minus |
Query 40 TLRGMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 432 TLRGMR DH QYMSM G RC ISLERRALLE GLVE YSP*RGSPRTMKSWAVLSA MA+SR*PRGSL*TSSMTTMRADLS+EDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQG V RS QMG D Subject 3398 TLRGMRCDHMQYMSMKG*RCFISLERRALLELGLVE*YSP*RGSPRTMKSWAVLSAWMAKSR*PRGSL*TSSMTTMRADLSKEDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGFVLRSWQMGYD 3790
Range 3: 3390 to 3788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 78/133(59%) | 0/133(0%) | Minus/Minus |
Query 32 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPA 430 +A NAV P AVHVHE L++L LAGE IA + + GV+L LKR+A++DEKLGGAV M+G VQVA+R+LVDLV+DD A EQRG P ++ P +SR RLEG+ P +AEL+S D LV+ L L+KL DGV L A Subject 3390 IAWNAVRPHAVHVHERLKVLYLAGEASIARVGVGGVILALKRIAQNDEKLGGAVSMDGQVQVAARELVDLVDDDNAG*LEQRGFPSAEPPAVSRGRLEGIFPLVAELDSGDSDLVVTARLRLEKLADGV*LAA 3788
Range 4: 3385 to 3786 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 73/134(54%) | 0/134(0%) | Minus/Minus |
Query 27 CEECGGTIGSTCP*MVGDA*SRWRDGHCWNLD*WSGTHLEEXXXXXXXXXRCCPHEWLGPGSLEEACRPRQ*RLCEQI*AERTPRFPVSNDQQAKT*GSPSIHCGAQQLGRLSCNCDRAWSSEADRWGKTSRRR 428 C ECG T STCP* A SRWR HC + WS T EE R R*K GRCC H W PGS E ACRPR+*R C *A+R P+ S+ QQ KT*G+ S CGA+Q G+ SC+ +A S EA RWG T R R Subject 3385 CVECGATTCSTCP*KAEGALSRWRGEHC*SWGWWSDTRPEEDRPER*KVGRCCQHGWPSPGSREGACRPRR*RQCGLT*AKRIPKCRASSGQQGKT*GNLSTRCGARQWGQRSCSYGKASS*EAGRWGMTCRNR 3786
Range 5: 3380 to 3631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 50/84(60%) | 0/84(0%) | Plus/Plus |
Query 22 LARRREVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSCGQ 273 L R R+V+PHL AS+D+AL LQD P+C APQ +E PQVF C* LE +LG+L AQ+ H RH RGLQA SRLPG H C Q Subject 3380 LRRLRQVIPHLPASQDEALP*LQDRCPHCRAPQRVERFPQVFPC*PLEARHLGILFAQVSPHCRHRRGLQAPSRLPGLGHPC*Q 3631
Range 6: 3704 to 3787 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 17/28(61%) | 0/28(0%) | Plus/Plus |
Query 346 QCPSLQRDQASPTIHGHVLPMVPPHSSQ 429 QC LQRD+A HGHVL +V PHS+Q Subject 3704 QCSPLQRDKAPSAFHGHVLHVVAPHSTQ 3787
Range 7: 3391 to 3549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 28/53(53%) | 0/53(0%) | Plus/Plus |
Query 33 AGSLTPSVSF*RPSPVAITR*PSQLLSSAMNGRTPSSLRLLIVGDWEPGSPLC 191 A S TPS SF R S TR S L SSA +G+ PSSL LL G G+PLC Subject 3391 AASHTPSASFSRRSLAVTTRSLSPLSSSATSGKIPSSLPLLTAGGSALGNPLC 3549
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 8
Range 1: 3387 to 3788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 132/134(99%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYC+WSHRIPRN Subject 3387 GCGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCMWSHRIPRN 3788
Range 2: 3398 to 3790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 117/131(89%) | 0/131(0%) | Minus/Minus |
Query 40 TLRGMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*D 432 TLRGMR DH QYMSM G RC ISLERRALLE GLVE YSP*RGSPRTMKSWAVLSA MA+SR*PRGSL*TSSMTTMRADLS+EDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQG V RS QMG D Subject 3398 TLRGMRCDHMQYMSMKG*RCFISLERRALLELGLVE*YSP*RGSPRTMKSWAVLSAWMAKSR*PRGSL*TSSMTTMRADLSKEDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGFVLRSWQMGYD 3790
Range 3: 3390 to 3788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 78/133(59%) | 0/133(0%) | Minus/Minus |
Query 32 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPA 430 +A NAV P AVHVHE L++L LAGE IA + + GV+L LKR+A++DEKLGGAV M+G VQVA+R+LVDLV+DD A EQRG P ++ P +SR RLEG+ P +AEL+S D LV+ L L+KL DGV L A Subject 3390 IAWNAVRPHAVHVHERLKVLYLAGEASIARVGVGGVILALKRIAQNDEKLGGAVSMDGQVQVAARELVDLVDDDNAG*LEQRGFPSAEPPAVSRGRLEGIFPLVAELDSGDSDLVVTARLRLEKLADGV*LAA 3788
Range 4: 3385 to 3786 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 73/134(54%) | 0/134(0%) | Minus/Minus |
Query 27 CEECGGTIGSTCP*MVGDA*SRWRDGHCWNLD*WSGTHLEEXXXXXXXXXRCCPHEWLGPGSLEEACRPRQ*RLCEQI*AERTPRFPVSNDQQAKT*GSPSIHCGAQQLGRLSCNCDRAWSSEADRWGKTSRRR 428 C ECG T STCP* A SRWR HC + WS T EE R R*K GRCC H W PGS E ACRPR+*R C *A+R P+ S+ QQ KT*G+ S CGA+Q G+ SC+ +A S EA RWG T R R Subject 3385 CVECGATTCSTCP*KAEGALSRWRGEHC*SWGWWSDTRPEEDRPER*KVGRCCQHGWPSPGSREGACRPRR*RQCGLT*AKRIPKCRASSGQQGKT*GNLSTRCGARQWGQRSCSYGKASS*EAGRWGMTCRNR 3786
Range 5: 3380 to 3631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 50/84(60%) | 0/84(0%) | Plus/Plus |
Query 22 LARRREVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSCGQ 273 L R R+V+PHL AS+D+AL LQD P+C APQ +E PQVF C* LE +LG+L AQ+ H RH RGLQA SRLPG H C Q Subject 3380 LRRLRQVIPHLPASQDEALP*LQDRCPHCRAPQRVERFPQVFPC*PLEARHLGILFAQVSPHCRHRRGLQAPSRLPGLGHPC*Q 3631
Range 6: 3704 to 3787 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 17/28(61%) | 0/28(0%) | Plus/Plus |
Query 346 QCPSLQRDQASPTIHGHVLPMVPPHSSQ 429 QC LQRD+A HGHVL +V PHS+Q Subject 3704 QCSPLQRDKAPSAFHGHVLHVVAPHSTQ 3787
Range 7: 3391 to 3549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 28/53(53%) | 0/53(0%) | Plus/Plus |
Query 33 AGSLTPSVSF*RPSPVAITR*PSQLLSSAMNGRTPSSLRLLIVGDWEPGSPLC 191 A S TPS SF R S TR S L SSA +G+ PSSL LL G G+PLC Subject 3391 AASHTPSASFSRRSLAVTTRSLSPLSSSATSGKIPSSLPLLTAGGSALGNPLC 3549
Grapevine rupestris vein feathering virus polyprotein gene, complete cds
Sequence ID: AY706994.1 Length: 6617 Number of Matches: 9
Range 1: 3381 to 3782 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
323.6 bits(700) | 0.0 | 130/134(97%) | 0/134(0%) | Plus/Plus |
Query 29 GGGKSYPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLSSEIKHLQPFMDMYCLWSHRIPRN 430 G GKS+PICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARL+SEIKHLQP+MDMYCLWSHRIPRN Subject 3381 GCGKSFPICQLLKTKPCRNYKIAVPTVELRNEWKDSLKSSPADRWRLGTWESSLLKSARIVVIDEVYKLPRGYLDLAIHADSTAQLFIVLGDPLQGEYHSTNPNSSNARLASEIKHLQPYMDMYCLWSHRIPRN 3782
Range 2: 3389 to 3784 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 114/132(86%) | 0/132(0%) | Minus/Minus |
Query 37 TLRGMRWDHRQYMSMNGWRCLISLERRALLEFGLVEWYSP*RGSPRTMKSWAVLSA*MARSR*PRGSL*TSSMTTMRADLSREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGLVFRS*QMG*DF 432 TLRGMRWDH+QYMSM GWRCLISL RRALLE GLVEWYSP RGSPRTMKS AV SA MA+SR*P GSL*TSS+TT+RAD REDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQG V RS QMG DF Subject 3389 TLRGMRWDHKQYMSM*GWRCLISLARRALLELGLVEWYSPWRGSPRTMKSCAVESAWMAKSR*PLGSL*TSSITTIRADFRREDSQVPSLQRSAGEDLRESFHSLRSSTVGTAIL*LRQGFVLRSWQMGKDF 3784
Range 3: 3381 to 3782 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 79/134(59%) | 0/134(0%) | Minus/Minus |
Query 29 VARNAVGP*AVHVHEWLEMLDLAGETGIAGIWISGVVLTLKRVAEDDEKLGGAVRMNG*VQVASRKLVDLVNDDYASRFEQRGLPGSQSPTISRRRLEGVLPFIAELNSWDGYLVIATGLGLQKLTDGVRLPAA 430 VA +AVGP AVHVH LEMLDLA +T +AG+ +SGVVLTL+RVAED+EKL G V M+G*+++ SRKLVD +++D SR ++ LPGS+SP ISR E V P IAE N LV+A GL L+KL DG R AA Subject 3381 VAGDAVGPQAVHVHVGLEMLDLASQTSVAGVGVSGVVLTLERVAEDNEKLRG*VSMDG*IKITSRKLVDFIDNDDPSRLQEGRLPGSESPAISRGGFERVFPLIAEFNCGHRDLVVAAGLCLKKLADGERFSAA 3782
Range 4: 3379 to 3618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 42/80(52%) | 0/80(0%) | Minus/Minus |
Query 27 HEWLGPGSLEEACRPRQ*RLCEQI*AERTPRFPVSNDQQAKT*GSPSIHCGAQQLGRLSCNCDRAWSSEADRWGKTSRRR 266 H WL +L EACR +*R EQ +TPRF VS+DQQ + * S S HCG Q SC+C RA S EA RWGK R R Subject 3379 HGWLNQDNLSEACRLHR*RRSEQTSGGKTPRFRVSSDQQGRI*ESLSTHCGVQLWAPRSCSCGRALS*EAGRWGKIFRSR 3618
Range 5: 3658 to 3783 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 27/42(64%) | 0/42(0%) | Minus/Minus |
Query 306 RCEECGGTIGSTCP*MVGDA*SRWRDGHCWNLD*WSGTHLEE 431 RC CGGT STCP GDA*SR D CW+ *WSGTHL E Subject 3658 RCGGCGGTTSSTCPCRAGDA*SR*PDERCWSWG*WSGTHLGE 3783
Range 6: 3380 to 3619 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 43/80(54%) | 0/80(0%) | Plus/Plus |
Query 28 RRREVLPHLSASEDQALSQLQDSRPNC*APQ*MEGLPQVFAC*SLETGNLGVLSAQICSHSRH*RGLQASSRLPGPSHSC 267 R R++ PHL AS D+AL QLQD + * PQ*+E L Q+ C*SLET NLGV ++CS R+ LQAS RL SH C Subject 3380 RLRKIFPHLPAS*DKALPQLQDRGAHS*TPQ*VERLSQILPC*SLETRNLGVFPPEVCSDRRYR*SLQASERLS*FSHPC 3619
Range 7: 3664 to 3783 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 27/40(68%) | 0/40(0%) | Plus/Plus |
Query 312 KVSTTPLIQIPAMPVSPARSSISNHSWTCTAYGPTAFLAT 431 KVSTTPL PA V ARSSIS+ +WTCTA GPTA AT Subject 3664 KVSTTPLTPTPATLVWLARSSISSPTWTCTACGPTASPAT 3783
Range 8: 3382 to 3534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 29/51(57%) | 0/51(0%) | Plus/Plus |
Query 30 AAGSLTPSVSF*RPSPVAITR*PSQLLSSAMNGRTPSSLRLLIVGDWEPGS 182 AA +L+PS SF R SP A TR L+SAM+G+T S+ LLI GD EPGS Subject 3382 AAENLSPSASFLRQSPAATTRSRCPQLNSAMSGKTLSNPPLLIAGDSEPGS 3534
Nucleotide Sequence (110 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
92.3 | 218.1 | 32% | 3.662e-18 | 60% | KY513701.1 | |
92.3 | 218.1 | 32% | 3.662e-18 | 60% | NC_034205.1 | |
90.4 | 272.3 | 33% | 1.304e-17 | 58% | KY513702.1 | |
89.0 | 151.1 | 33% | 3.382e-17 | 75% | KX828705.1 | |
88.1 | 208.0 | 35% | 6.384e-17 | 56% | KX756274.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 3
Range 1: 5691 to 5798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 36/36(100%) | 0/36(0%) | Minus/Plus |
Query 3 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG 110 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG Subject 5691 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG 5798
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 3
Range 1: 5691 to 5798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 36/36(100%) | 0/36(0%) | Minus/Plus |
Query 3 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG 110 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG Subject 5691 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG 5798
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 4
Range 1: 5692 to 5799 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 35/36(97%) | 0/36(0%) | Minus/Plus |
Query 3 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG 110 AFWNLLPI+SVPYQSAVFDFFCRHASEDIKVMFKLG Subject 5692 AFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLG 5799
Range 2: 5694 to 5801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 31/36(86%) | 0/36(0%) | Plus/Minus |
Query 1 RPNLNMTLMSSDAWRQKKSKTADW*GTESIGSRFQK 108 RP+LNMTLMSS+AWRQKKSKTAD *GT+S+GSRFQK Subject 5694 RPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSRFQK 5801
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 2
Grapevine rupestris vein feathering virus isolate TLF polyprotein gene, partial cds
Sequence ID: KX756274.1 Length: 491 Number of Matches: 3
Range 1: 212 to 319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 33/36(92%) | 0/36(0%) | Minus/Plus |
Query 3 AFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLG 110 AFWNLLPID+VPYQSAVFDFFCRHA ED+KVMFKLG Subject 212 AFWNLLPIDAVPYQSAVFDFFCRHAPEDVKVMFKLG 319
Nucleotide Sequence (410 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
298.9 | 1014.9 | 32% | 2.182e-79 | 46% | KX828705.1 | |
298.4 | 1120.8 | 38% | 2.997e-79 | 55% | KY513702.1 | |
297.1 | 978.1 | 29% | 7.772e-79 | 53% | KY513701.1 | |
297.1 | 978.1 | 29% | 7.772e-79 | 53% | NC_034205.1 | |
282.9 | 973.1 | 26% | 1.467e-74 | 49% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 9
Range 1: 5486 to 5884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.9 bits(646) | 0.0 | 124/133(93%) | 0/133(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 408 C V GCIRSP+ALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGD+FWNLLPIE+VPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE Subject 5486 CGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDSFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 5884
Range 2: 5497 to 5886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.0 bits(489) | 0.0 | 106/130(82%) | 0/130(0%) | Minus/Minus |
Query 21 TSLESPGKCWRTAFPRRALRWRELSIE*VE*DNQDSL*SKWEKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 410 TSLESPGKCWRTA PR A R RELS+E*VE*D+Q+SL*S+ EKREIST PSLN+TL+SSEA RQKKSKTAD* GT S+GS+FQK SPRE*PIENSVA*ERSFSSMVPSST TMSLAKSA GER+QP T Subject 5497 TSLESPGKCWRTALPRSARRCRELSME*VE*DSQESL*SR*EKREISTRPSLNITLISSEA*RQKKSKTAD*YGTDSIGSKFQKESPRE*PIENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPSQPT 5886
Range 3: 5498 to 5881 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 70/128(55%) | 0/128(0%) | Minus/Minus |
Query 22 FGVTGKVLANSLSTESSALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTAWQPN 405 FGVTGK+LA+S ++E + L+RIEH V GVRQPG+LVKQ+ EERD D+A+ EH D+ S+ T+EV+D LI D +QVPEGVT+GVT+ E G+ E+LLING++V+ +HELG+K + G + A N Subject 5498 FGVTGKMLADSFASERATLQRIEHGVSGVRQPGELVKQMREERDLDAAELEHHFDILRSVTTKEVKDCGLIRHGLDWKQVPEGVTKGVTNREFGGVREELLINGAIVHTNHELGKKRDWGTNAALAAN 5881
Range 4: 5697 to 5885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 37/63(59%) | 0/63(0%) | Plus/Plus |
Query 221 VAMLQKTSRSCSNWAESKSLSSPTCFTSCPGCLTPPTRCSILSSAELSVERLFANTFPVTPKK 409 V L + S+ CS+ A S+SLSS CFTS PGCLTP T CSIL S S +L AN FPVTPK+ Subject 5697 VVTLLRISK*CSSSAASRSLSSLICFTSSPGCLTPLTPCSILCSVARSEAKLSANIFPVTPKR 5885
Range 5: 5508 to 5600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 15/31(48%) | 0/31(0%) | Plus/Plus |
Query 32 QAVSAPPLHFSPSSWCALTTEPLMRSFSPMP 124 +A P F PSSW T PLMRS S P Subject 5508 RAAFVPQSRFLPSSWFVWTMAPLMRSSSLTP 5600
Range 6: 5670 to 5882 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 39/71(55%) | 0/71(0%) | Minus/Minus |
Query 194 LWSHRESVGEQPFHGELCAGEN*ASSRWSKTTRTACEASGRRERFRLCPV*T*P*CLLKHGDRRSRRQPTD 406 LWSHRE+VG Q G A EN*A S+WSKT R ACEA RRER R *T * K D+RS+R D Subject 5670 LWSHRENVGGQLCLGARDAAEN*AWSKWSKTARRACEADERRERSRRGRA*TSL*YPQKRDDKRSQRLRID 5882
Range 7: 5520 to 5603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 14/28(50%) | 0/28(0%) | Minus/Minus |
Query 44 QWHRREASHQWFRRQRTP*AWRKVQWGS 127 +W +R ASHQW R P*AW+K + G+ Subject 5520 RWRKRGASHQWCHRPHKP*AWQKARLGN 5603
Range 8: 5512 to 5751 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 37/80(46%) | 0/80(0%) | Plus/Plus |
Query 36 LYPLPHCTFRQAHGVR*RRNH**EASLLCH*VLNRSLPR*RLLEPAPHRSCPLSVGCLRLLLSPCFRRHQGHVQTGQSRN 275 L+ P F QAHG+ R +H**EA LL H +L SLP * LLE A +R +S+ L LLLS F +Q VQ R+ Subject 5512 LHSFPSRAFCQAHGLCGRWHH**EAPLLRHRILYWSLPW*LLLELASNRVRAVSIRSL*LLLSSRF*GYQSDVQARPRRD 5751
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 9
Range 1: 5545 to 5943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.4 bits(645) | 0.0 | 123/133(92%) | 0/133(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 408 C V GCIRSP+ALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIE+VPYQSAVFDFFCRHASEDIKVMFKLGRVE+SLFSHLLH+LSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE Subject 5545 CGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHRLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 5943
Range 2: 5556 to 5945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.6 bits(521) | 0.0 | 110/130(85%) | 0/130(0%) | Minus/Minus |
Query 21 TSLESPGKCWRTAFPRRALRWRELSIE*VE*DNQDSL*SKWEKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 410 TSLESPGKCWRTA PRRA RWRELS+E*VE ++Q+SL*SK EKRE ST PSLNMTLMSSEAWRQKKSKTAD**GT SMGSRFQKASPRE*PIENSVA E SFSSMVPSST TMSLA SA GER+QP T Subject 5556 TSLESPGKCWRTALPRRARRWRELSME*VEYESQESL*SK*EKRETSTRPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSRFQKASPRE*PIENSVAYESSFSSMVPSSTQTMSLANSATGERMQPSQPT 5945
Range 3: 5575 to 5940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 78/122(64%) | 0/122(0%) | Minus/Minus |
Query 40 FGVTGKVLANSLSTESSALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGAD 405 FGVT KVLAN + E S LER+EH V GV +PG+ VKQV EE DFD+ + EHD DV *S+ATEE++DS LI D FDGEQ+PEGVTE +TD*ELSGI E+LL++G+VV+ HE GE+ +GGA+ Subject 5575 FGVTRKVLANGFAAEGSTLERVEHGVSGV*EPGEPVKQVREEGDFDATKLEHDFDVL*SVATEEIKDSGLIRDRFDGEQIPEGVTERMTD*ELSGIREQLLVDGAVVHTDHEFGEQRDGGAN 5940
Range 4: 5571 to 5810 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 49/80(61%) | 0/80(0%) | Plus/Plus |
Query 36 LYPLPHCTFRQAHGVR*RRNH**EASLLCH*VLNRSLPR*RLLEPAPHRSCPLSVGCLRLLLSPCFRRHQGHVQTGQSRN 275 L+ LP RQ HG+ RR+H EA+L+CH*VLNRS R*RLLE APHR CPLS+ CL LLSP FR HQ HVQ R+ Subject 5571 LHSLPRRAVRQTHGLCGRRHHRREAALVCH*VLNRSFSR*RLLESAPHRICPLSIRCL*FLLSPRFRGHQSHVQAWSRRS 5810
Range 5: 5871 to 5942 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 15/24(62%) | 0/24(0%) | Plus/Plus |
Query 336 AQFSPAQSSPWKGCSPTLSR*LQR 407 AQ SPA S P + SP LS *LQR Subject 5871 AQLSPASSPPRQSRSPALSW*LQR 5942
Range 6: 5717 to 5941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 44/75(59%) | 0/75(0%) | Minus/Minus |
Query 182 LWSHRESVGEQPFHGELCAGEN*ASSRWSKTTRTACEASGRRERFRLCPV*T*P*CLLKHGDRRSRRQPTDRGQL 406 LWSH+ES GE+ G L AGE+*A S+WS R ACEAS RR R R *T* *C LK GDRR++RQ D+GQ+ Subject 5717 LWSHQESAGERLCRGGLDAGES*AWSKWSMRARRACEASERRGRLRRDQA*T*L*CPLKRGDRRNQRQRIDKGQI 5941
Range 7: 5579 to 5665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 16/29(55%) | 0/29(0%) | Minus/Minus |
Query 44 TQWHRREASHQWFRRQRTP*AWRKVQWGS 130 TQWH R AS +W RR P* WR + GS Subject 5579 TQWHTRAASRRWCRRPHRP*VWRTARRGS 5665
Range 8: 5756 to 5944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 38/63(60%) | 0/63(0%) | Plus/Plus |
Query 221 VAMLQKTSRSCSNWAESKSLSSPTCFTSCPGCLTPPTRCSILSSAELSVERLFANTFPVTPKK 409 VA LQ+TS+SCS+ SKS SS TCFT PG TP T CS LSS E S + FA+TF VTPK+ Subject 5756 VATLQRTSKSCSSLVASKSPSSLTCFTGSPGSHTPLTPCSTLSSVEPSAAKPFASTFLVTPKR 5944
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 8
Range 1: 5544 to 5942 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.1 bits(642) | 0.0 | 122/133(92%) | 0/133(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 408 C V GCIRSP+ALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPI++VPYQSAVFDFFCRHASEDIKVMFKLGRVE+SLFSHLLHKLSWLSYSTYSMLNSLQRRAL+GKAVRQHFPGDSKE Subject 5544 CGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALKGKAVRQHFPGDSKE 5942
Range 2: 5555 to 5944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(478) | 0.0 | 99/130(76%) | 0/130(0%) | Minus/Minus |
Query 21 TSLESPGKCWRTAFPRRALRWRELSIE*VE*DNQDSL*SKWEKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 410 TSLESPGKCWRTA P A R RELS+E*VE ++Q+SL*S+WEK E ST PSLN+TL+SSEAWRQKKSKTAD GT SMGSRFQKASPRE P+ENSVA*E SFSS+VPSSTHT+SLAK A G+R+QP T Subject 5555 TSLESPGKCWRTALPLSARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRATGDRMQPSQPT 5944
Range 3: 5568 to 5936 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 68/123(55%) | 0/123(0%) | Minus/Minus |
Query 34 GVTGKVLANSLSTESSALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA 402 G+T ++LANSL+ E + L+ +EH VGGV +PG+LVKQVGE+ DFD+ Q EH+LD+ MATEEV+D L+ D GEQ+PE +TE V D ELSGI E+LLIN ++VNA+H+LG++ + D A Subject 5568 GITREMLANSLAFERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDRRPDAA 5936
Range 4: 5570 to 5809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 44/80(55%) | 0/80(0%) | Plus/Plus |
Query 36 LYPLPHCTFRQAHGVR*RRNH**EASLLCH*VLNRSLPR*RLLEPAPHRSCPLSVGCLRLLLSPCFRRHQGHVQTGQSRN 275 L+P+ + QA G+R*R ++**EA+LLCH*VL+R L R* LE APHR P+ V L LLLSPC +QG+VQ G R+ Subject 5570 LHPVAGRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRS 5809
Range 5: 5722 to 5886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 31/55(56%) | 0/55(0%) | Minus/Minus |
Query 188 AGEN*ASSRWSKTTRTACEASGRRERFRLCPV*T*P*CLLKHGDRRSRRQPTDRG 352 A +*A SRWS R ACEA GR+ R R P *T*P* +HGDRRS+R T G Subject 5722 AAGS*AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMG 5886
Range 6: 5569 to 5664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 17/32(53%) | 0/32(0%) | Minus/Minus |
Query 35 TQWHRREASHQWFRRQRTP*AWRKVQWGSGYS 130 TQWH+R ASHQ RQR P AW++ + +G S Subject 5569 TQWHKRAASHQ*CHRQRIPSAWQRERPATGCS 5664
Range 7: 5755 to 5943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 34/63(54%) | 0/63(0%) | Plus/Plus |
Query 221 VAMLQKTSRSCSNWAESKSLSSPTCFTSCPGCLTPPTRCSILSSAELSVERLFANTFPVTPKK 409 VAM ++ SR CS+W SKS SPTCFTS PG TPPT CS S S RLFA+ V P++ Subject 5755 VAMPRRISRLCSSWVVSKSHFSPTCFTSSPGSHTPPTPCSTPCSVVRSKARLFASISRVIPRR 5943
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 8
Range 1: 5544 to 5942 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.1 bits(642) | 0.0 | 122/133(92%) | 0/133(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 408 C V GCIRSP+ALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPI++VPYQSAVFDFFCRHASEDIKVMFKLGRVE+SLFSHLLHKLSWLSYSTYSMLNSLQRRAL+GKAVRQHFPGDSKE Subject 5544 CGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALKGKAVRQHFPGDSKE 5942
Range 2: 5555 to 5944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(478) | 0.0 | 99/130(76%) | 0/130(0%) | Minus/Minus |
Query 21 TSLESPGKCWRTAFPRRALRWRELSIE*VE*DNQDSL*SKWEKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 410 TSLESPGKCWRTA P A R RELS+E*VE ++Q+SL*S+WEK E ST PSLN+TL+SSEAWRQKKSKTAD GT SMGSRFQKASPRE P+ENSVA*E SFSS+VPSSTHT+SLAK A G+R+QP T Subject 5555 TSLESPGKCWRTALPLSARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRATGDRMQPSQPT 5944
Range 3: 5568 to 5936 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 68/123(55%) | 0/123(0%) | Minus/Minus |
Query 34 GVTGKVLANSLSTESSALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGADTA 402 G+T ++LANSL+ E + L+ +EH VGGV +PG+LVKQVGE+ DFD+ Q EH+LD+ MATEEV+D L+ D GEQ+PE +TE V D ELSGI E+LLIN ++VNA+H+LG++ + D A Subject 5568 GITREMLANSLAFERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDRRPDAA 5936
Range 4: 5570 to 5809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 44/80(55%) | 0/80(0%) | Plus/Plus |
Query 36 LYPLPHCTFRQAHGVR*RRNH**EASLLCH*VLNRSLPR*RLLEPAPHRSCPLSVGCLRLLLSPCFRRHQGHVQTGQSRN 275 L+P+ + QA G+R*R ++**EA+LLCH*VL+R L R* LE APHR P+ V L LLLSPC +QG+VQ G R+ Subject 5570 LHPVAGRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRS 5809
Range 5: 5722 to 5886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 31/55(56%) | 0/55(0%) | Minus/Minus |
Query 188 AGEN*ASSRWSKTTRTACEASGRRERFRLCPV*T*P*CLLKHGDRRSRRQPTDRG 352 A +*A SRWS R ACEA GR+ R R P *T*P* +HGDRRS+R T G Subject 5722 AAGS*AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMG 5886
Range 6: 5569 to 5664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 17/32(53%) | 0/32(0%) | Minus/Minus |
Query 35 TQWHRREASHQWFRRQRTP*AWRKVQWGSGYS 130 TQWH+R ASHQ RQR P AW++ + +G S Subject 5569 TQWHKRAASHQ*CHRQRIPSAWQRERPATGCS 5664
Range 7: 5755 to 5943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 34/63(54%) | 0/63(0%) | Plus/Plus |
Query 221 VAMLQKTSRSCSNWAESKSLSSPTCFTSCPGCLTPPTRCSILSSAELSVERLFANTFPVTPKK 409 VAM ++ SR CS+W SKS SPTCFTS PG TPPT CS S S RLFA+ V P++ Subject 5755 VAMPRRISRLCSSWVVSKSHFSPTCFTSSPGSHTPPTPCSTPCSVVRSKARLFASISRVIPRR 5943
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 8
Range 1: 597 to 995 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
282.9 bits(611) | 0.0 | 114/133(86%) | 0/133(0%) | Plus/Plus |
Query 10 CVGCVWLPGCIRSPIALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIEAVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKE 408 C V GCIRSP+ALFAKLMVCVDDGTIDEK++SYATEFSIGHSLGDAFWNLLP+EAVPYQSAVFDFFCRHA ED+KVMFKLGRVE+SLF+HLL KL+WLSYS+Y+ LNSLQRRALRGKAVRQHFPGDSKE Subject 597 CGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKMISYATEFSIGHSLGDAFWNLLPLEAVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFAHLLSKLTWLSYSSYAYLNSLQRRALRGKAVRQHFPGDSKE 995
Range 2: 608 to 997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 99/130(76%) | 0/130(0%) | Minus/Minus |
Query 21 TSLESPGKCWRTAFPRRALRWRELSIE*VE*DNQDSL*SKWEKREISTLPSLNMTLMSSEAWRQKKSKTAD**GTASMGSRFQKASPRE*PIENSVA*ERSFSSMVPSSTHTMSLAKSAMGERIQPGNQT 410 TSLESPGKCWRTAFPRRA RW E * E*DNQ SL +W KRE ST PSLNMT SS AWRQKKSKTAD *GTAS G RFQKASPRE P+ENSVA*E FSSMVPSST TMSLAK A GER+QP T Subject 608 TSLESPGKCWRTAFPRRARRWSEFR*A*EE*DNQVSLERRWAKRETSTRPSLNMTFTSSGAWRQKKSKTADW*GTASRGRRFQKASPRECPMENSVA*EIIFSSMVPSSTQTMSLAKRATGERMQPSQPT 997
Range 3: 627 to 992 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 71/122(58%) | 0/122(0%) | Minus/Minus |
Query 40 FGVTGKVLANSLSTESSALERIEHRVGGVRQPGQLVKQVGEERDFDSAQFEHDLDVF*SMATEEVEDSRLIGDSFDGEQVPEGVTEGVTD*ELSGIGEKLLINGSVVNAHHELGEKCNGGAD 405 FGV KVLAN LS E +ALER+ VGGV QPGQL ++VGEER+FD+ +FEHDL V MA EEVE+ L+ S ++VPEG+ +GV D E GIG ING+VVNA+HELG+K +GGA+ Subject 627 FGVPRKVLANCLSAEGAALERV*IGVGGVGQPGQLGEEVGEERNFDATKFEHDLHVLRGMAAEEVENR*LVRHSLKRKEVPEGIAKGVPDGEFGGIGNHFFINGAVVNANHELGKKSHGGAN 992
Range 4: 772 to 993 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 36/74(49%) | 0/74(0%) | Minus/Minus |
Query 185 LWSHRESVGEQPFHGELCAGEN*ASSRWSKTTRTACEASGRRERFRLCPV*T*P*CLLKHGDRRSRRQPTDRGQ 406 LWS +ES GE PF G AG + R S+TTR+A GRRE+ R V*T*P HG RRSR+ T + Q Subject 772 LWSPQESAGELPFRGGRGAGASLDRRRRSRTTRSAWRGGGRREKLRRDQV*T*PSRPQGHGGRRSRKPLTGKAQ 993
Range 5: 631 to 714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 17/28(61%) | 0/28(0%) | Minus/Minus |
Query 44 QWHRREASHQWFRRQRTP*AWRKVQWGS 127 +WHR+ HQW RRQR P*AW+K GS Subject 631 RWHRKSFFHQWCRRQRKP*AWQKEPRGS 714
Range 6: 811 to 996 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 36/62(58%) | 0/62(0%) | Plus/Plus |
Query 224 AMLQKTSRSCSNWAESKSLSSPTCFTSCPGCLTPPTRCSILSSAELSVERLFANTFPVTPKK 409 AM +T RSCSN SK LSSPT S PGC TPPT SSA S ER FA+TF TPK+ Subject 811 AMPLRT*RSCSNLVASKFLSSPTSSPS*PGCPTPPTPI*TRSSAAPSAERQFASTFLGTPKR 996
Range 7: 631 to 711 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 18/27(67%) | 0/27(0%) | Plus/Plus |
Query 44 APPLHFSPSSWCALTTEPLMRSFSPMP 124 APP F PSSW ALTT PLM+ PMP Subject 631 APPWLFLPSSWFALTTAPLMKK*FPMP 711
Range 8: 623 to 862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 41/80(51%) | 0/80(0%) | Plus/Plus |
Query 36 LYPLPHCTFRQAHGVR*RRNH**EASLLCH*VLNRSLPR*RLLEPAPHRSCPLSVGCLRLLLSPCFRRHQGHVQTGQSRN 275 L+ LP +F QAHG+R*RR+H**+ LCH +L+R+LP LLEP C L V RLLL PC +GHVQT R+ Subject 623 LHSLPRGSFCQAHGLR*RRHH**KNDFLCHRILHRALPWRCLLEPPSS*GCALPVSGFRLLLPPCP*GREGHVQTWSRRS 862
Nucleotide Sequence (218 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
156.4 | 650.4 | 29% | 4.503e-37 | 61% | KX828705.1 | |
159.6 | 575.4 | 30% | 4.875e-38 | 55% | KY513701.1 | |
159.6 | 575.4 | 30% | 4.875e-38 | 55% | NC_034205.1 | |
157.8 | 607.0 | 21% | 1.737e-37 | 56% | KY513702.1 | |
153.7 | 615.6 | 21% | 3.028e-36 | 58% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 6
Range 1: 5477 to 5665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 61/63(97%) | 0/63(0%) | Plus/Plus |
Query 30 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV 218 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGD+FWNLLPI+SV Subject 5477 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDSFWNLLPIESV 5665
Range 2: 5476 to 5664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 58/63(92%) | 0/63(0%) | Minus/Minus |
Query 29 TESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPSHPT**PQNSP 217 T+SIGS+FQK SPRE*P+ENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPS PT**PQNSP Subject 5476 TDSIGSKFQKESPRE*PIENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPSQPT**PQNSP 5664
Range 3: 5480 to 5659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.8 bits(214) | 0.0 | 41/60(68%) | 0/60(0%) | Minus/Minus |
Query 33 VDRKQIPEGVAKGVTDGEFSGIRKKLLINGAIINANHELGEECDGGTNAALASNVVTAEL 212 +D KQ+PEGV KGVT+ EF G+R++LLINGAI++ NHELG++ D GTNAALA+NVV AEL Subject 5480 LDWKQVPEGVTKGVTNREFGGVREELLINGAIVHTNHELGKKRDWGTNAALAANVVAAEL 5659
Range 4: 5454 to 5660 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 42/69(61%) | 0/69(0%) | Plus/Plus |
Query 7 SSTQTMSLASSAVTTLDARAAFVPPSHSSPSSWFALMMAPLMRSFFLMPLNSPSVTPLATPSGICFRST 213 S + SSA TTL ARAAFVP S PSSWF MAPLMRS L P NS VTPL TPSG CF+S+ Subject 5454 SRKSARATVSSAATTLAARAAFVPQSRFLPSSWFVWTMAPLMRSSSLTPPNSLLVTPLVTPSGTCFQSS 5660
Range 5: 5482 to 5661 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 41/60(68%) | 0/60(0%) | Plus/Plus |
Query 35 VLRLLRWMRGLHSFPRRTLRQAHGLR**WHH**EASFLCH*ILHRSLPWRRLLESASDRL 214 VLRLLRW+RGLHSFP R QAHGL WHH**EA L H IL+ SLPW LLE AS+R+ Subject 5482 VLRLLRWLRGLHSFPSRAFCQAHGLCGRWHH**EAPLLRHRILYWSLPW*LLLELASNRV 5661
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 6
Range 1: 5535 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 63/63(100%) | 0/63(0%) | Plus/Plus |
Query 30 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV 218 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV Subject 5535 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV 5723
Range 2: 5534 to 5722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 54/63(86%) | 0/63(0%) | Minus/Minus |
Query 29 TESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPSHPT**PQNSP 217 TES+GSRFQKASPRE PMENSVA*E SFSS+VPSST T+SLAK ATG+RMQPS PT**PQNSP Subject 5534 TESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRATGDRMQPSQPT**PQNSP 5722
Range 3: 5538 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.1 bits(175) | 0.0 | 37/62(60%) | 0/62(0%) | Minus/Minus |
Query 33 DRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGAIINANHELGEECDGGTNAALASNVVTAEL 218 D V +QIPE + + V DGE SGIR++LLIN AI+NA H+LG+E D +AALA++VVTAEL Subject 5538 D*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDRRPDAALATHVVTAEL 5723
Range 4: 5540 to 5719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 37/60(62%) | 0/60(0%) | Plus/Plus |
Query 35 VLRLLRWMRGLHSFPRRTLRQAHGLR**WHH**EASFLCH*ILHRSLPWRRLLESASDRL 214 VLRLLR +RGLH R+L QA G+R* WH+**EA+ LCH*+LHR L LESA RL Subject 5540 VLRLLRGLRGLHPVAGRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRL 5719
Range 5: 5530 to 5661 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 27/44(61%) | 0/44(0%) | Minus/Minus |
Query 25 QWHKKEASHQWCHHQRKP*AWRRVRRGNECSPRIQRSNRRTRQA 156 QWHK+ ASHQ CH QR P AW+R R CSPR RSNRRT ++ Subject 5530 QWHKRAASHQ*CHRQRIPSAWQRERPATGCSPRNPRSNRRTHRS 5661
Range 6: 5512 to 5706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 36/65(55%) | 0/65(0%) | Plus/Plus |
Query 7 SSTQTMSLASSAVTTLDARAAFVPPSHSSPSSWFALMMAPLMRSFFLMPLNSPSVTPLATPSGIC 201 S ++ SSAVTT ARAA S S PS W+AL MA LMRS LMPL+SPS T SGIC Subject 5512 SRKNELATVSSAVTTWVARAASGRRSLSLPS*WYALTMALLMRSCSLMPLSSPSATLSVMLSGIC 5706
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 6
Range 1: 5535 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 63/63(100%) | 0/63(0%) | Plus/Plus |
Query 30 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV 218 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV Subject 5535 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV 5723
Range 2: 5534 to 5722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 54/63(86%) | 0/63(0%) | Minus/Minus |
Query 29 TESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPSHPT**PQNSP 217 TES+GSRFQKASPRE PMENSVA*E SFSS+VPSST T+SLAK ATG+RMQPS PT**PQNSP Subject 5534 TESMGSRFQKASPREWPMENSVA*ESSFSSIVPSSTHTISLAKRATGDRMQPSQPT**PQNSP 5722
Range 3: 5538 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.1 bits(175) | 0.0 | 37/62(60%) | 0/62(0%) | Minus/Minus |
Query 33 DRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGAIINANHELGEECDGGTNAALASNVVTAEL 218 D V +QIPE + + V DGE SGIR++LLIN AI+NA H+LG+E D +AALA++VVTAEL Subject 5538 D*VYGEQIPESITERVADGELSGIREQLLINSAIVNAYHQLGKESDRRPDAALATHVVTAEL 5723
Range 4: 5540 to 5719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 37/60(62%) | 0/60(0%) | Plus/Plus |
Query 35 VLRLLRWMRGLHSFPRRTLRQAHGLR**WHH**EASFLCH*ILHRSLPWRRLLESASDRL 214 VLRLLR +RGLH R+L QA G+R* WH+**EA+ LCH*+LHR L LESA RL Subject 5540 VLRLLRGLRGLHPVAGRSLCQADGMR*RWHY**EAALLCH*VLHRPLSR*CFLESAPHRL 5719
Range 5: 5530 to 5661 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 27/44(61%) | 0/44(0%) | Minus/Minus |
Query 25 QWHKKEASHQWCHHQRKP*AWRRVRRGNECSPRIQRSNRRTRQA 156 QWHK+ ASHQ CH QR P AW+R R CSPR RSNRRT ++ Subject 5530 QWHKRAASHQ*CHRQRIPSAWQRERPATGCSPRNPRSNRRTHRS 5661
Range 6: 5512 to 5706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 36/65(55%) | 0/65(0%) | Plus/Plus |
Query 7 SSTQTMSLASSAVTTLDARAAFVPPSHSSPSSWFALMMAPLMRSFFLMPLNSPSVTPLATPSGIC 201 S ++ SSAVTT ARAA S S PS W+AL MA LMRS LMPL+SPS T SGIC Subject 5512 SRKNELATVSSAVTTWVARAASGRRSLSLPS*WYALTMALLMRSCSLMPLSSPSATLSVMLSGIC 5706
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 6
Range 1: 5536 to 5724 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 62/63(98%) | 0/63(0%) | Plus/Plus |
Query 30 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV 218 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPI+SV Subject 5536 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIESV 5724
Range 2: 5535 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 56/63(89%) | 0/63(0%) | Minus/Minus |
Query 29 TESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPSHPT**PQNSP 217 T+S+GSRFQKASPRE*P+ENSVA E SFSSMVPSSTQTMSLA SATGERMQPS PT**PQNSP Subject 5535 TDSMGSRFQKASPRE*PIENSVAYESSFSSMVPSSTQTMSLANSATGERMQPSQPT**PQNSP 5723
Range 3: 5536 to 5724 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.2 bits(195) | 0.0 | 37/63(59%) | 0/63(0%) | Minus/Minus |
Query 30 DRVDRKQIPEGVAKGVTDGEFSGIRKKLLINGAIINANHELGEECDGGTNAALASNVVTAELA 218 DR D +QIPEGV + +TD E SGIR++LL++GA+++ +HE GE+ DGG NA LA++VV AELA Subject 5536 DRFDGEQIPEGVTERMTD*ELSGIREQLLVDGAVVHTDHEFGEQRDGGANATLAADVVAAELA 5724
Range 4: 5535 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 39/63(62%) | 0/63(0%) | Plus/Plus |
Query 29 WRVLRLLRWMRGLHSFPRRTLRQAHGLR**WHH**EASFLCH*ILHRSLPWRRLLESASDRLC 217 WRVLRLLR +RGLHS PRR +RQ HGL HH EA+ +CH*+L+RS RLLESA R+C Subject 5535 WRVLRLLRRLRGLHSLPRRAVRQTHGLCGRRHHRREAALVCH*VLNRSFSR*RLLESAPHRIC 5723
Range 5: 5534 to 5722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 35/63(56%) | 0/63(0%) | Plus/Plus |
Query 28 LASSAVTTLDARAAFVPPSHSSPSSWFALMMAPLMRSFFLMPLNSPSVTPLATPSGICFRSTL 216 +ASSA TT AR AF PPS SP+SW AP RS MPL+S SV TPSGIC S L Subject 5534 MASSAATTSAARVAFAPPSRCSPNSWSVWTTAPSTRSCSRMPLSSQSVILSVTPSGICSPSNL 5722
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 6
Range 1: 588 to 776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 58/63(92%) | 0/63(0%) | Plus/Plus |
Query 30 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKLLSYATEFSIGHSLGDAFWNLLPIDSV 218 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEK++SYATEFSIGHSLGDAFWNLLP+++V Subject 588 GEFCGYYVGCEGCIRSPVALFAKLMVCVDDGTIDEKMISYATEFSIGHSLGDAFWNLLPLEAV 776
Range 2: 587 to 775 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 55/63(87%) | 0/63(0%) | Minus/Minus |
Query 29 TESIGSRFQKASPRE*PMENSVA*ERSFSSMVPSSTQTMSLAKSATGERMQPSHPT**PQNSP 217 T S G RFQKASPRE PMENSVA*E FSSMVPSSTQTMSLAK ATGERMQPS PT**PQNSP Subject 587 TASRGRRFQKASPRECPMENSVA*EIIFSSMVPSSTQTMSLAKRATGERMQPSQPT**PQNSP 775
Range 3: 588 to 764 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.3 bits(202) | 0.0 | 37/59(63%) | 0/59(0%) | Minus/Minus |
Query 30 RKQIPEGVAKGVTDGEFSGIRKKLLINGAIINANHELGEECDGGTNAALASNVVTAELA 206 RK++PEG+AKGV DGEF GI INGA++NANHELG++ GG NA L ++VV AELA Subject 588 RKEVPEGIAKGVPDGEFGGIGNHFFINGAVVNANHELGKKSHGGANATLTADVVAAELA 764
Range 4: 587 to 775 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 42/63(67%) | 0/63(0%) | Plus/Plus |
Query 29 WRVLRLLRWMRGLHSFPRRTLRQAHGLR**WHH**EASFLCH*ILHRSLPWRRLLESASDRLC 217 WRVLRLLR + GLHS PR + QAHGLR* HH**+ FLCH ILHR+LPWR LLE S C Subject 587 WRVLRLLRRL*GLHSLPRGSFCQAHGLR*RRHH**KNDFLCHRILHRALPWRCLLEPPSS*GC 775
Range 5: 583 to 762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 37/60(62%) | 0/60(0%) | Plus/Plus |
Query 25 SLASSAVTTLDARAAFVPPSHSSPSSWFALMMAPLMRSFFLMPLNSPSVTPLATPSGICF 204 ++ASSA TT R AF PP PSSWFAL APLM+ F MP NSPS TPLA PSG F Subject 583 AMASSAATTSAVRVAFAPPWLFLPSSWFALTTAPLMKK*FPMPPNSPSGTPLAMPSGTSF 762
Nucleotide Sequence (584 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
344.7 | 1647.8 | 54% | 5.969e-93 | 53% | KX828705.1 | |
349.8 | 1746.8 | 60% | 1.814e-94 | 37% | KY513701.1 | |
349.8 | 1746.8 | 60% | 1.814e-94 | 37% | NC_034205.1 | |
348.8 | 1824.6 | 60% | 3.424e-94 | 64% | KY513702.1 | |
311.3 | 1464.6 | 72% | 7.001e-83 | 53% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 13
Range 1: 5645 to 6097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
344.7 bits(746) | 0.0 | 143/151(95%) | 0/151(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLILPASAPMSNEAQLPVSGRPSRDDHRSDPQPTLPLAPKVQESPALT 454 LLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVE+SLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGL+LP APMSNEAQLP SGRPSRDDHRSDPQP LPLAPKVQESPAL+ Subject 5645 LLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLLLPTPAPMSNEAQLPTSGRPSRDDHRSDPQPALPLAPKVQESPALS 6097
Range 2: 5644 to 6093 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.9 bits(587) | 0.0 | 123/150(82%) | 0/150(0%) | Minus/Minus |
Query 1 SAGDS*TLGARGRVG*GSERWSSREGRPETGS*ASFDMGAEAGRIKPPVRTRGVDDIEKV*SNSPCSSVTSLESPGKCWRTAFPRRALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 450 SAGDS TLGARGR G*GSERWSSREGRPE GS ASFD+GA GR +PPVRTRGVDDIE V*SNSPCSSVTSLESPGKCWRTA PR A R RELSME*VE*DSQ+SL SR*E RE STRP+LN+TL+SS+A RQKKSKTAD GT+SIGS+ Subject 5644 SAGDSWTLGARGRAG*GSERWSSREGRPEVGSWASFDIGAGVGRSRPPVRTRGVDDIENV*SNSPCSSVTSLESPGKCWRTALPRSARRCRELSME*VE*DSQESL*SR*EKREISTRPSLNITLISSEA*RQKKSKTAD*YGTDSIGSK 6093
Range 3: 5645 to 6094 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.8 bits(445) | 0.0 | 93/150(62%) | 0/150(0%) | Minus/Minus |
Query 2 ERRRFLNFGRERKSRLRIRAMVITRRTTRDGQLSFI*HGSRGRKDQATSEDARS**H*KGVKQFTL*LSDFFGVTGKVLANGFSAQSSALERIEHGVSGVGQPRQLVEQMRKQGDFDTTQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 451 ERRRFL+ GRER+SRLRIR MVI RRTTR GQL FI*H K+QA SEDAR *H*K VKQFTL*LS FGVTGK+LA+ F+++ + L+RIEHGVSGV QP +LV+QMR++ D D +LEH D+ + T+EV++ GL+R +D KQ Subject 5645 ERRRFLDLGRERESRLRIRTMVIARRTTRSGQLGFI*HWGWSGKEQAASEDARGG*H*KCVKQFTL*LSYLFGVTGKMLADSFASERATLQRIEHGVSGVRQPGELVKQMREERDLDAAELEHHFDILRSVTTKEVKDCGLIRHGLDWKQ 6094
Range 4: 5646 to 6101 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 85/152(56%) | 0/152(0%) | Minus/Minus |
Query 3 KV*APAIPELWAREEE*AEDQSDGHHEKDDQRRAAELHLTWEQRQEGSSHQ*GREELMTLKRCEAIHLVAQ*LLWSHRESAGERLFRAELCVGEN*AWSKWSRTAKTACGADEKTGRLRHDPT*T*P*CLLMHGDRRSRKRRTGKGQSRSEA 458 +V APAIP WARE E AEDQ+DGH EKDDQ+ AA LHLT EG+ Q*GRE MTLK CEAIHLVAQ LWSHRE+ G +L EN*AWSKWS+TA+ AC ADE+ R R *T * D+RS++ R ++R EA Subject 5646 RVRAPAIPGPWAREGEQAEDQNDGHREKDDQKWAAGLHLTLGLEWEGAGRQ*GREGWMTLKMCEAIHLVAQLPLWSHRENVGGQLCLGARDAAEN*AWSKWSKTARRACEADERRERSRRGRA*TSL*YPQKRDDKRSQRLRIDTARTRLEA 6101
Range 5: 5912 to 6043 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 39/44(89%) | 0/44(0%) | Plus/Plus |
Query 451 HTFSMSSTPRVLTGGLILPASAHMSNEAQLPVSGRPSRDDHRSD 582 HTFSMSSTPRVLTGGL+LP A MSNEAQLP SGRPSRDDHRSD Subject 5912 HTFSMSSTPRVLTGGLLLPTPAPMSNEAQLPTSGRPSRDDHRSD 6043
Range 6: 5763 to 5930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 37/56(66%) | 0/56(0%) | Plus/Plus |
Query 120 LICSTSCLGCPTPLTPCSILSNAELCAEKPFASTFPVTPKKSLSYKVNCFTPFQCH 287 LIC TS GC TPLTPCSIL + K A+ FPVTPK+ LSYKVNCFT FQCH Subject 5763 LICFTSSPGCLTPLTPCSILCSVARSEAKLSANIFPVTPKR*LSYKVNCFTHFQCH 5930
Range 7: 5647 to 6033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 73/129(57%) | 0/129(0%) | Plus/Plus |
Query 4 ASDRLCPLPVRRFRLLLSPCIRRHQGHVQVGSCRSLPVFSSAPQXXXXXXXXXXXXQFSPTQSSARKSRSPALSR*LQRSH*ATR*IASHLFNVINSSRPHWWLDPSCLCSHVK*SSAARLWSSFS**P 390 AS+R+ + +R LLLS +Q VQ R L + SSA QA+LAVLLHLLHAQFS + R+S P SR*LQR +*ATR*IASH+FNVI+ SRPHW PS +VK*S AA WSSFS *P Subject 5647 ASNRVRAVSIRSL*LLLSSRF*GYQSDVQARPRRDLSLLSSASQALLAVLLHLLHAQFSAASRAPRQSCPPTFSR*LQRGN*ATR*IASHIFNVIHPSRPHWRPAPSHSSPNVK*SPAAHFWSSFSR*P 6033
Range 8: 5908 to 6045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 35/46(76%) | 0/46(0%) | Minus/Minus |
Query 447 GSERWSSREGRPETGS*ASLDM*AEAGRIKPPVRTRGVDDIEKV*A 584 GSERWSSREGRPE GS AS D+ A GR +PPVRTRGVDDIE V*+ Subject 5908 GSERWSSREGRPEVGSWASFDIGAGVGRSRPPVRTRGVDDIENV*S 6045
Range 9: 5982 to 6098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 32/39(82%) | 0/39(0%) | Plus/Plus |
Query 339 CQMKLSCPSLVVLLVMTIALILSLLFLSRPKFRNRRRSH 455 CQMK SCP LVVLL MTI LILSLL LSRP+ RNRRRSH Subject 5982 CQMKPSCPLLVVLLAMTIVLILSLLSLSRPRSRNRRRSH 6098
Range 10: 5910 to 6044 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 27/45(60%) | 0/45(0%) | Minus/Minus |
Query 449 DQSDGHHEKDDQRRAVELH*TCEQRQEGSSHQ*GREELMTLKRCE 583 DQ+DGH EKDDQ+ A LH T EG+ Q*GRE MTLK CE Subject 5910 DQNDGHREKDDQKWAAGLHLTLGLEWEGAGRQ*GREGWMTLKMCE 6044
Range 11: 1840 to 1896 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 10/19(53%) | 0/19(0%) | Minus/Minus |
Query 178 ESPGKCWRTAFPRRALRWR 234 E GKC RT R L WR Subject 1840 EKRGKCSRTRKRGRILAWR 1896
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 16
Range 1: 5703 to 6155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
349.8 bits(757) | 0.0 | 145/151(96%) | 0/151(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLILPASAPMSNEAQLPVSGRPSRDDHRSDPQPTLPLAPKVQESPALT 454 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL+GKAVRQHFPGDSKEVTELQGELLHTFSMS+TPRVLTGGL+LP SAPMSNEAQLPVSGRPSRDDHRSDPQPT+PLAPKVQESPAL+ Subject 5703 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALKGKAVRQHFPGDSKEVTELQGELLHTFSMSTTPRVLTGGLLLPVSAPMSNEAQLPVSGRPSRDDHRSDPQPTIPLAPKVQESPALS 6155
Range 2: 5702 to 6151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 123/150(82%) | 0/150(0%) | Minus/Minus |
Query 1 SAGDS*TLGARGRVG*GSERWSSREGRPETGS*ASFDMGAEAGRIKPPVRTRGVDDIEKV*SNSPCSSVTSLESPGKCWRTAFPRRALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 450 SAGDS TLGARG VG*GSERWSSREGRPETG+ ASFDMGAE GR +PPVRTRGV DIE V*SNSPCSSVTSLESPGKCWRTA P A R RELSME*VE +SQ+SL SR E ETSTRP+LN+TL+SS+AWRQKKSKTADW GTES+GSR Subject 5702 SAGDSWTLGARGIVG*GSERWSSREGRPETGNWASFDMGAETGRRRPPVRTRGVVDIENV*SNSPCSSVTSLESPGKCWRTALPLSARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSR 6151
Range 3: 5703 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 92/150(61%) | 0/150(0%) | Minus/Minus |
Query 2 ERRRFLNFGRERKSRLRIRAMVITRRTTRDGQLSFI*HGSRGRKDQATSEDARS**H*KGVKQFTL*LSDFFGVTGKVLANGFSAQSSALERIEHGVSGVGQPRQLVEQMRKQGDFDTTQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 451 ERR FL+FGRER SRLRIRAMVI RRTTR+GQL FI*HGSR +++A SE+ARS *H*K VKQFTL*LS G+T ++LAN + + + L+ +EHGV GV +P +LV+Q+ ++ DFDTTQLEH+LD+ MATEEV++ LV D V +Q Subject 5703 ERRGFLDFGRERNSRLRIRAMVIARRTTRNGQLGFI*HGSRDGEEKAASENARSG*H*KCVKQFTL*LSHLLGITREMLANSLAFERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQ 6152
Range 4: 5908 to 6159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 58/84(69%) | 0/84(0%) | Minus/Minus |
Query 207 KV*APAIPELWAREEE*AEDQSDGHHEKDDQRRAAELHLTWEQRQEGSSHQ*GREELMTLKRCEAIHLVAQ*LLWSHRESAGER 458 +V AP IP LWAREE *AEDQSDGH EKDDQ+RA LHLTWEQR+ G Q* REE +TLK CEAIHLVAQ W+H +AGE+ Subject 5908 RVRAPGIPGLWAREE**AEDQSDGHREKDDQKRATGLHLTWEQRRGGEGRQ*EREEWLTLKMCEAIHLVAQSPPWNHPGNAGEQ 6159
Range 5: 5716 to 5877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 31/54(57%) | 0/54(0%) | Minus/Minus |
Query 15 N*AWSKWSRTAKTACGADEKTGRLRHDPT*T*P*CLLMHGDRRSRKRRTGKGQS 176 +*AWS+WS A+ AC A + RLRHDP *T*P* HGDRRS++ TG G S Subject 5716 S*AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMGLS 5877
Range 6: 5702 to 6091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 76/130(58%) | 0/130(0%) | Plus/Plus |
Query 1 SASDRLCPLPVRRFRLLLSPCIRRHQGHVQVGSCRSLPVFSSAPQXXXXXXXXXXXXQFSPTQSSARKSRSPALSR*LQRSH*ATR*IASHLFNVINSSRPHWWLDPSCLCSHVK*SSAARLWSSFS**P 390 SA RL P+PV LLLSPC+ +QG+VQ GSCRSL A QA+LA++LHLLHAQ + R+ SPA * Q *ATR*IASH+FNV +SSR HW P LCSHVK*S AR WSSFS *P Subject 5702 SAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRSLTFLPPASQALLALILHLLHAQLPAASCAQRQGCSPAFPG*FQGGD*ATR*IASHIFNVNHSSRSHWRPSPPRLCSHVK*SPVARFWSSFSR*P 6091
Range 7: 5970 to 6101 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 40/44(91%) | 0/44(0%) | Plus/Plus |
Query 451 HTFSMSSTPRVLTGGLILPASAHMSNEAQLPVSGRPSRDDHRSD 582 HTFSMS+TPRVLTGGL+LP SA MSNEAQLPVSGRPSRDDHRSD Subject 5970 HTFSMSTTPRVLTGGLLLPVSAPMSNEAQLPVSGRPSRDDHRSD 6101
Range 8: 5827 to 5985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 27/53(51%) | 0/53(0%) | Plus/Plus |
Query 126 CSTSCLGCPTPLTPCSILSNAELCAEKPFASTFPVTPKKSLSYKVNCFTPFQC 284 C TS G TP TPCS + + FAS V P++ LSYKVNCFT FQC Subject 5827 CFTSSPGSHTPPTPCSTPCSVVRSKARLFASISRVIPRR*LSYKVNCFTHFQC 5985
Range 9: 5966 to 6103 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 36/46(78%) | 0/46(0%) | Minus/Minus |
Query 447 GSERWSSREGRPETGS*ASLDM*AEAGRIKPPVRTRGVDDIEKV*A 584 GSERWSSREGRPETG+ AS DM AE GR +PPVRTRGV DIE V*+ Subject 5966 GSERWSSREGRPETGNWASFDMGAETGRRRPPVRTRGVVDIENV*S 6103
Range 10: 1675 to 1737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 9/21(43%) | 0/21(0%) | Minus/Minus |
Query 108 AWSKWSRTAKTACGADEKTGR 170 AW WS T C AD++ R Subject 1675 AWPGWS*TGSKWCAADDERFR 1737
Range 11: 4694 to 4774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 10/27(37%) | 0/27(0%) | Minus/Minus |
Query 319 SERWSSREGRPETGS*ASFDMGAEAGR 399 +E+W+S+ P S GAE GR Subject 4694 AEQWASKRREPRISSLGVMR*GAEDGR 4774
Range 12: 6040 to 6156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 34/39(87%) | 0/39(0%) | Plus/Plus |
Query 339 CQMKLSCPSLVVLLVMTIALILSLLFLSRPKFRNRRRSH 455 CQMK SCP LVVLL MTIALILSLLFLSRPK RN RRSH Subject 6040 CQMKPSCPFLVVLLAMTIALILSLLFLSRPKSRNPRRSH 6156
Range 13: 5968 to 6102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 30/45(67%) | 0/45(0%) | Minus/Minus |
Query 449 DQSDGHHEKDDQRRAVELH*TCEQRQEGSSHQ*GREELMTLKRCE 583 DQSDGH EKDDQ+RA LH T EQR+ G Q* REE +TLK CE Subject 5968 DQSDGHREKDDQKRATGLHLTWEQRRGGEGRQ*EREEWLTLKMCE 6102
Range 14: 5969 to 6103 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 31/45(69%) | 0/45(0%) | Plus/Plus |
Query 450 SHLFNVINSSRPHWWLDPSCLCSHV**SSTARLWSSFS**PSL*S 584 SH+FNV +SSR HW P LCSHV *S AR WSSFS *PSL*S Subject 5969 SHIFNVNHSSRSHWRPSPPRLCSHVK*SPVARFWSSFSR*PSL*S 6103
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 16
Range 1: 5703 to 6155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
349.8 bits(757) | 0.0 | 145/151(96%) | 0/151(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLILPASAPMSNEAQLPVSGRPSRDDHRSDPQPTLPLAPKVQESPALT 454 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRAL+GKAVRQHFPGDSKEVTELQGELLHTFSMS+TPRVLTGGL+LP SAPMSNEAQLPVSGRPSRDDHRSDPQPT+PLAPKVQESPAL+ Subject 5703 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALKGKAVRQHFPGDSKEVTELQGELLHTFSMSTTPRVLTGGLLLPVSAPMSNEAQLPVSGRPSRDDHRSDPQPTIPLAPKVQESPALS 6155
Range 2: 5702 to 6151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 123/150(82%) | 0/150(0%) | Minus/Minus |
Query 1 SAGDS*TLGARGRVG*GSERWSSREGRPETGS*ASFDMGAEAGRIKPPVRTRGVDDIEKV*SNSPCSSVTSLESPGKCWRTAFPRRALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 450 SAGDS TLGARG VG*GSERWSSREGRPETG+ ASFDMGAE GR +PPVRTRGV DIE V*SNSPCSSVTSLESPGKCWRTA P A R RELSME*VE +SQ+SL SR E ETSTRP+LN+TL+SS+AWRQKKSKTADW GTES+GSR Subject 5702 SAGDSWTLGARGIVG*GSERWSSREGRPETGNWASFDMGAETGRRRPPVRTRGVVDIENV*SNSPCSSVTSLESPGKCWRTALPLSARRCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADWYGTESMGSR 6151
Range 3: 5703 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 92/150(61%) | 0/150(0%) | Minus/Minus |
Query 2 ERRRFLNFGRERKSRLRIRAMVITRRTTRDGQLSFI*HGSRGRKDQATSEDARS**H*KGVKQFTL*LSDFFGVTGKVLANGFSAQSSALERIEHGVSGVGQPRQLVEQMRKQGDFDTTQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 451 ERR FL+FGRER SRLRIRAMVI RRTTR+GQL FI*HGSR +++A SE+ARS *H*K VKQFTL*LS G+T ++LAN + + + L+ +EHGV GV +P +LV+Q+ ++ DFDTTQLEH+LD+ MATEEV++ LV D V +Q Subject 5703 ERRGFLDFGRERNSRLRIRAMVIARRTTRNGQLGFI*HGSRDGEEKAASENARSG*H*KCVKQFTL*LSHLLGITREMLANSLAFERTTLQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LVWD*VYGEQ 6152
Range 4: 5908 to 6159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 58/84(69%) | 0/84(0%) | Minus/Minus |
Query 207 KV*APAIPELWAREEE*AEDQSDGHHEKDDQRRAAELHLTWEQRQEGSSHQ*GREELMTLKRCEAIHLVAQ*LLWSHRESAGER 458 +V AP IP LWAREE *AEDQSDGH EKDDQ+RA LHLTWEQR+ G Q* REE +TLK CEAIHLVAQ W+H +AGE+ Subject 5908 RVRAPGIPGLWAREE**AEDQSDGHREKDDQKRATGLHLTWEQRRGGEGRQ*EREEWLTLKMCEAIHLVAQSPPWNHPGNAGEQ 6159
Range 5: 5716 to 5877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 31/54(57%) | 0/54(0%) | Minus/Minus |
Query 15 N*AWSKWSRTAKTACGADEKTGRLRHDPT*T*P*CLLMHGDRRSRKRRTGKGQS 176 +*AWS+WS A+ AC A + RLRHDP *T*P* HGDRRS++ TG G S Subject 5716 S*AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTGMGLS 5877
Range 6: 5702 to 6091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 76/130(58%) | 0/130(0%) | Plus/Plus |
Query 1 SASDRLCPLPVRRFRLLLSPCIRRHQGHVQVGSCRSLPVFSSAPQXXXXXXXXXXXXQFSPTQSSARKSRSPALSR*LQRSH*ATR*IASHLFNVINSSRPHWWLDPSCLCSHVK*SSAARLWSSFS**P 390 SA RL P+PV LLLSPC+ +QG+VQ GSCRSL A QA+LA++LHLLHAQ + R+ SPA * Q *ATR*IASH+FNV +SSR HW P LCSHVK*S AR WSSFS *P Subject 5702 SAPHRLSPIPVSGL*LLLSPCLGGYQGYVQAGSCRSLTFLPPASQALLALILHLLHAQLPAASCAQRQGCSPAFPG*FQGGD*ATR*IASHIFNVNHSSRSHWRPSPPRLCSHVK*SPVARFWSSFSR*P 6091
Range 7: 5970 to 6101 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 40/44(91%) | 0/44(0%) | Plus/Plus |
Query 451 HTFSMSSTPRVLTGGLILPASAHMSNEAQLPVSGRPSRDDHRSD 582 HTFSMS+TPRVLTGGL+LP SA MSNEAQLPVSGRPSRDDHRSD Subject 5970 HTFSMSTTPRVLTGGLLLPVSAPMSNEAQLPVSGRPSRDDHRSD 6101
Range 8: 5827 to 5985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 27/53(51%) | 0/53(0%) | Plus/Plus |
Query 126 CSTSCLGCPTPLTPCSILSNAELCAEKPFASTFPVTPKKSLSYKVNCFTPFQC 284 C TS G TP TPCS + + FAS V P++ LSYKVNCFT FQC Subject 5827 CFTSSPGSHTPPTPCSTPCSVVRSKARLFASISRVIPRR*LSYKVNCFTHFQC 5985
Range 9: 5966 to 6103 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 36/46(78%) | 0/46(0%) | Minus/Minus |
Query 447 GSERWSSREGRPETGS*ASLDM*AEAGRIKPPVRTRGVDDIEKV*A 584 GSERWSSREGRPETG+ AS DM AE GR +PPVRTRGV DIE V*+ Subject 5966 GSERWSSREGRPETGNWASFDMGAETGRRRPPVRTRGVVDIENV*S 6103
Range 10: 1675 to 1737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 9/21(43%) | 0/21(0%) | Minus/Minus |
Query 108 AWSKWSRTAKTACGADEKTGR 170 AW WS T C AD++ R Subject 1675 AWPGWS*TGSKWCAADDERFR 1737
Range 11: 4694 to 4774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 10/27(37%) | 0/27(0%) | Minus/Minus |
Query 319 SERWSSREGRPETGS*ASFDMGAEAGR 399 +E+W+S+ P S GAE GR Subject 4694 AEQWASKRREPRISSLGVMR*GAEDGR 4774
Range 12: 6040 to 6156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 34/39(87%) | 0/39(0%) | Plus/Plus |
Query 339 CQMKLSCPSLVVLLVMTIALILSLLFLSRPKFRNRRRSH 455 CQMK SCP LVVLL MTIALILSLLFLSRPK RN RRSH Subject 6040 CQMKPSCPFLVVLLAMTIALILSLLFLSRPKSRNPRRSH 6156
Range 13: 5968 to 6102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 30/45(67%) | 0/45(0%) | Minus/Minus |
Query 449 DQSDGHHEKDDQRRAVELH*TCEQRQEGSSHQ*GREELMTLKRCE 583 DQSDGH EKDDQ+RA LH T EQR+ G Q* REE +TLK CE Subject 5968 DQSDGHREKDDQKRATGLHLTWEQRRGGEGRQ*EREEWLTLKMCE 6102
Range 14: 5969 to 6103 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 31/45(69%) | 0/45(0%) | Plus/Plus |
Query 450 SHLFNVINSSRPHWWLDPSCLCSHV**SSTARLWSSFS**PSL*S 584 SH+FNV +SSR HW P LCSHV *S AR WSSFS *PSL*S Subject 5969 SHIFNVNHSSRSHWRPSPPRLCSHVK*SPVARFWSSFSR*PSL*S 6103
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 12
Range 1: 5704 to 6156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
348.8 bits(755) | 0.0 | 145/151(96%) | 0/151(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLILPASAPMSNEAQLPVSGRPSRDDHRSDPQPTLPLAPKVQESPALT 454 LLPI+SVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLH+LSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMS+TPRVLTGGLILPA APMSNEAQLP+SGRPSRDDHRSDPQPTLPLAPKVQESPAL+ Subject 5704 LLPIESVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHRLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSTTPRVLTGGLILPAPAPMSNEAQLPISGRPSRDDHRSDPQPTLPLAPKVQESPALS 6156
Range 2: 5703 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.9 bits(633) | 0.0 | 129/150(86%) | 0/150(0%) | Minus/Minus |
Query 1 SAGDS*TLGARGRVG*GSERWSSREGRPETGS*ASFDMGAEAGRIKPPVRTRGVDDIEKV*SNSPCSSVTSLESPGKCWRTAFPRRALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 450 SAGDS TLGARGRVG*GSERWSSREGRPE GS ASFDMGA AGR++PPVRTRGV DIE V*SNSPCSSVTSLESPGKCWRTA PRRA RWRELSME*VE +SQ+SL S+*E RETSTRP+LNMTLMSS+AWRQKKSKTAD *GT+S+GSR Subject 5703 SAGDSWTLGARGRVG*GSERWSSREGRPEMGSWASFDMGAGAGRMRPPVRTRGVVDIENV*SNSPCSSVTSLESPGKCWRTALPRRARRWRELSME*VEYESQESL*SK*EKRETSTRPSLNMTLMSSEAWRQKKSKTAD**GTDSMGSR 6152
Range 3: 5704 to 6153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.5 bits(536) | 0.0 | 107/150(71%) | 0/150(0%) | Minus/Minus |
Query 2 ERRRFLNFGRERKSRLRIRAMVITRRTTRDGQLSFI*HGSRGRKDQATSEDARS**H*KGVKQFTL*LSDFFGVTGKVLANGFSAQSSALERIEHGVSGVGQPRQLVEQMRKQGDFDTTQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 451 ERRRFL+FGRERKSRLRIRAMVITRRTTRDGQL FI*HG R R+D+ +DARS *H*+ VKQFTL*LSD FGVT KVLANGF+A+ S LER+EHGVSGV +P + V+Q+R++GDFD T+LEHD DV * +ATEE+++ GL+RDR D +Q Subject 5704 ERRRFLDFGRERKSRLRIRAMVITRRTTRDGQLGFI*HGGRSREDETAGKDARSG*H*ECVKQFTL*LSDLFGVTRKVLANGFAAEGSTLERVEHGVSGV*EPGEPVKQVREEGDFDATKLEHDFDVL*SVATEEIKDSGLIRDRFDGEQ 6153
Range 4: 5714 to 6160 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.1 bits(498) | 0.0 | 103/149(69%) | 0/149(0%) | Minus/Minus |
Query 12 KV*APAIPELWAREEE*AEDQSDGHHEKDDQRRAAELHLTWEQRQEGSSHQ*GREELMTLKRCEAIHLVAQ*LLWSHRESAGERLFRAELCVGEN*AWSKWSRTAKTACGADEKTGRLRHDPT*T*P*CLLMHGDRRSRKRRTGKGQSR 458 +V APAIP LWAREEE*AEDQSDGHHEKDDQR AA LHLTW Q Q G +*GREE +TL+ CEAIHLVAQ* LWSH+ESAGERL R L GE+*AWSKWS A+ AC A E+ GRLR D *T* *C L GDRR++++R KGQ R Subject 5714 RVRAPAIPGLWAREEE*AEDQSDGHHEKDDQRWAAGLHLTWGQEQGG*DRR*GREEWLTLRMCEAIHLVAQ*PLWSHQESAGERLCRGGLDAGES*AWSKWSMRARRACEASERRGRLRRDQA*T*L*CPLKRGDRRNQRQRIDKGQIR 6160
Range 5: 5971 to 6102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 40/44(91%) | 0/44(0%) | Plus/Plus |
Query 451 HTFSMSSTPRVLTGGLILPASAHMSNEAQLPVSGRPSRDDHRSD 582 HTFSMS+TPRVLTGGLILPA A MSNEAQLP+SGRPSRDDHRSD Subject 5971 HTFSMSTTPRVLTGGLILPAPAPMSNEAQLPISGRPSRDDHRSD 6102
Range 6: 5756 to 5986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 52/77(68%) | 0/77(0%) | Plus/Plus |
Query 54 VAMHQKTXXXXXXXXXXXXPCFLICSTSCLGCPTPLTPCSILSNAELCAEKPFASTFPVTPKKSLSYKVNCFTPFQC 284 VA Q+TS+SCSS V SKSP L C T G TPLTPCS LS+ E A KPFASTF VTPK+SLSYKVNCFT QC Subject 5756 VATLQRTSKSCSSLVASKSPSSLTCFTGSPGSHTPLTPCSTLSSVEPSAAKPFASTFLVTPKRSLSYKVNCFTHSQC 5986
Range 7: 5703 to 6092 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 85/130(65%) | 0/130(0%) | Plus/Plus |
Query 1 SASDRLCPLPVRRFRLLLSPCIRRHQGHVQVGSCRSLPVFSSAPQXXXXXXXXXXXXQFSPTQSSARKSRSPALSR*LQRSH*ATR*IASHLFNVINSSRPHWWLDPSCLCSHVK*SSAARLWSSFS**P 390 SA R+CPL +R LLSP R HQ HVQ S RSLP+ S A QA+LA++LHLLHAQ SP S R+SRSPALS *LQR H*ATR*IASH+ NV +SSRP+ P C C HVK*S AA LWSSFS**P Subject 5703 SAPHRICPLSIRCL*FLLSPRFRGHQSHVQAWSRRSLPLLSLASQALLALILHLLHAQLSPASSPPRQSRSPALSW*LQRGH*ATR*IASHILNVNHSSRPYRRSHPPCSCPHVK*SPAAHLWSSFS**P 6092
Range 8: 6041 to 6157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 339 CQMKLSCPSLVVLLVMTIALILSLLFLSRPKFRNRRRSH 455 CQMK SCPSLVVLLVMTIALILSLLFLSRPK RNRRRSH Subject 6041 CQMKPSCPSLVVLLVMTIALILSLLFLSRPKSRNRRRSH 6157
Range 9: 5967 to 6104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 36/46(78%) | 0/46(0%) | Minus/Minus |
Query 447 GSERWSSREGRPETGS*ASLDM*AEAGRIKPPVRTRGVDDIEKV*A 584 GSERWSSREGRPE GS AS DM A AGR++PPVRTRGV DIE V*+ Subject 5967 GSERWSSREGRPEMGSWASFDMGAGAGRMRPPVRTRGVVDIENV*S 6104
Range 10: 5969 to 6103 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 29/45(64%) | 0/45(0%) | Minus/Minus |
Query 449 DQSDGHHEKDDQRRAVELH*TCEQRQEGSSHQ*GREELMTLKRCE 583 DQSDGHHEKDDQR A LH T Q Q G +*GREE +TL+ CE Subject 5969 DQSDGHHEKDDQRWAAGLHLTWGQEQGG*DRR*GREEWLTLRMCE 6103
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 13
Range 1: 756 to 1208 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
311.3 bits(673) | 0.0 | 127/151(84%) | 0/151(0%) | Plus/Plus |
Query 2 LLPIDSVPYQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSTPRVLTGGLILPASAPMSNEAQLPVSGRPSRDDHRSDPQPTLPLAPKVQESPALT 454 LLP+++VPYQSAVFDFFCRHA ED+KVMFKLGRVEVSLF+HLL KL+WLSYS+Y+ LNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSS P LTGGL+L + PMSNEAQLP SGRPSRDDHR+DPQP LP+APKVQESPAL+ Subject 756 LLPLEAVPYQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFAHLLSKLTWLSYSSYAYLNSLQRRALRGKAVRQHFPGDSKEVTELQGELLHTFSMSSPPSKLTGGLLLSTTPPMSNEAQLPASGRPSRDDHRTDPQPALPVAPKVQESPALS 1208
Range 2: 755 to 1204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.8 bits(517) | 0.0 | 110/150(73%) | 0/150(0%) | Minus/Minus |
Query 1 SAGDS*TLGARGRVG*GSERWSSREGRPETGS*ASFDMGAEAGRIKPPVRTRGVDDIEKV*SNSPCSSVTSLESPGKCWRTAFPRRALRWRELSME*VE*DSQDSLWSR*ENRETSTRPNLNMTLMSSDAWRQKKSKTADW*GTESIGSR 450 SAGDS TLGA GR G*GS RWSSREGRPE GS ASFDMG PPV G DDIE V SNSPCSSVTSLESPGKCWRTAFPRRA RW E * E*D+Q SL R RETSTRP+LNMT SS AWRQKKSKTADW*GT S G R Subject 755 SAGDSWTLGATGRAG*GSVRWSSREGRPEAGSWASFDMGGVVESRSPPVSFEGGDDIENVWSNSPCSSVTSLESPGKCWRTAFPRRARRWSEFR*A*EE*DNQVSLERRWAKRETSTRPSLNMTFTSSGAWRQKKSKTADW*GTASRGRR 1204
Range 3: 756 to 1205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 95/150(63%) | 0/150(0%) | Minus/Minus |
Query 2 ERRRFLNFGRERKSRLRIRAMVITRRTTRDGQLSFI*HGSRGRKDQATSEDARS**H*KGVKQFTL*LSDFFGVTGKVLANGFSAQSSALERIEHGVSGVGQPRQLVEQMRKQGDFDTTQLEHDLDVF*CMATEEVENGGLVRDRVDRKQ 451 ERRRFL+FGR+RKSRLRI AMVITRRTTR GQL FI*HG RG + ++ SE **H*K V+QFTL*LS FGV KVLAN SA+ +ALER+ GV GVGQP QL E++ ++ +FD T+ EHDL V MA EEVEN LVR + RK+ Subject 756 ERRRFLDFGRDRKSRLRISAMVITRRTTRSGQLGFI*HGGRGGEQKSASELRGW**H*KCVEQFTL*LSYLFGVPRKVLANCLSAEGAALERV*IGVGGVGQPGQLGEEVGEERNFDATKFEHDLHVLRGMAAEEVENR*LVRHSLKRKE 1205
Range 4: 760 to 1203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 78/148(53%) | 0/148(0%) | Minus/Minus |
Query 6 APAIPELWAREEE*AEDQSDGHHEKDDQRRAAELHLTWEQRQEGSSHQ*GREELMTLKRCEAIHLVAQ*LLWSHRESAGERLFRAELCVGEN*AWSKWSRTAKTACGADEKTGRLRHDPT*T*P*CLLMHGDRRSRKRRTGKGQSRSE 449 APAI LWAR+EE AEDQ DGHHEKDDQ+RA LHLTW Q* +MTLK C AIHLVAQ LWS +ESAGE FR G + + SRT ++A + +LR D *T*P HG RRSRK TGK Q + E Subject 760 APAILGLWARQEEQAEDQCDGHHEKDDQKRAVGLHLTWGAWWRAEVRQ*ASRVVMTLKMCGAIHLVAQLPLWSPQESAGELPFRGGRGAGASLDRRRRSRTTRSAWRGGGRREKLRRDQV*T*PSRPQGHGGRRSRKPLTGKAQPQEE 1203
Range 5: 1093 to 1209 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 34/39(87%) | 0/39(0%) | Plus/Plus |
Query 339 CQMKLSCPSLVVLLVMTIALILSLLFLSRPKFRNRRRSH 455 CQMK +CP LVVLLVMTIALILSLLFLSRPK +NRRRSH Subject 1093 CQMKPNCPLLVVLLVMTIALILSLLFLSRPKSKNRRRSH 1209
Range 6: 898 to 1041 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 31/48(65%) | 0/48(0%) | Plus/Plus |
Query 144 GCPTPLTPCSILSNAELCAEKPFASTFPVTPKKSLSYKVNCFTPFQCH 287 GCPTP TP S+A AE+ FASTF TPK+ LSYKVNC T FQCH Subject 898 GCPTPPTPI*TRSSAAPSAERQFASTFLGTPKR*LSYKVNCSTHFQCH 1041
Range 7: 773 to 862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 18/30(60%) | 0/30(0%) | Plus/Plus |
Query 19 CPLPVRRFRLLLSPCIRRHQGHVQVGSCRS 108 C LPV FRLLL PC +GHVQ S RS Subject 773 CALPVSGFRLLLPPCP*GREGHVQTWSRRS 862
Range 8: 1023 to 1154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 33/44(75%) | 0/44(0%) | Plus/Plus |
Query 451 HTFSMSSTPRVLTGGLILPASAHMSNEAQLPVSGRPSRDDHRSD 582 HTFSMSS P LTGGL+L + MSNEAQLP SGRPSRDDHR+D Subject 1023 HTFSMSSPPSKLTGGLLLSTTPPMSNEAQLPASGRPSRDDHRTD 1154
Range 9: 926 to 1144 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 40/73(55%) | 0/73(0%) | Plus/Plus |
Query 172 QFSPTQSSARKSRSPALSR*LQRSH*ATR*IASHLFNVINSSRPHWWLDPSCLCSHVK*SSAARLWSSFS**P 390 + +P RK SPALS LQR +*ATR*IA H+FNVI + HW HVK*S AR WSSFS**P Subject 926 KLAPAPRPPRKGSSPALSWGLQRGN*ATR*IAPHIFNVITTLEAHWRTSALHHAPHVK*SPTARFWSSFS**P 1144
Range 10: 1025 to 1156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 27/44(61%) | 0/44(0%) | Minus/Minus |
Query 453 GSERWSSREGRPETGS*ASLDM*AEAGRIKPPVRTRGVDDIEKV 584 GS RWSSREGRPE GS AS DM PPV G DDIE V Subject 1025 GSVRWSSREGRPEAGSWASFDMGGVVESRSPPVSFEGGDDIENV 1156
Range 11: 1024 to 1155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 24/44(55%) | 0/44(0%) | Minus/Minus |
Query 452 DQSDGHHEKDDQRRAVELH*TCEQRQEGSSHQ*GREELMTLKRC 583 DQ DGHHEKDDQ+RAV LH T Q* +MTLK C Subject 1024 DQCDGHHEKDDQKRAVGLHLTWGAWWRAEVRQ*ASRVVMTLKMC 1155
Nucleotide Sequence (166 letters)
Query ID: | ds2015-149_49 |
Query definition: | No definition line |
Query length: | 122 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
131.2 | 447.7 | 33% | 7.516e-30 | 54% | KY513701.1 | |
131.2 | 447.7 | 33% | 7.516e-30 | 54% | NC_034205.1 | |
130.7 | 330.5 | 34% | 1.035e-29 | 47% | KX828705.1 | |
129.8 | 380.0 | 32% | 1.953e-29 | 58% | KY513702.1 | |
115.6 | 270.3 | 33% | 3.686e-25 | 57% | AY128949.1 |
Alignments
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: KY513701.1 Length: 6730 Number of Matches: 6
Range 1: 5727 to 5888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 54/54(100%) | 0/54(0%) | Plus/Plus |
Query 3 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR 164 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR Subject 5727 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR 5888
Range 2: 5729 to 5887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 42/53(79%) | 0/53(0%) | Minus/Minus |
Query 5 RWRELSME*VE*DSQDSLWSRWENRETSTRPNLNMTLMSSDAWRQKKSKTADW 163 R RELSME*VE +SQ+SL SRWE ETSTRP+LN+TL+SS+AWRQKKSKTADW Subject 5729 RCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADW 5887
Range 3: 5727 to 5885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 30/53(57%) | 0/53(0%) | Minus/Minus |
Query 3 LERIEHGVSGVGQPRQLVEQMGKQGDFDTTQLEHDLDVF*CMATEEIENGGLV 161 L+ +EHGV GV +P +LV+Q+G++ DFDTTQLEH+LD+ MATEE+++ LV Subject 5727 LQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LV 5885
Range 4: 5728 to 5877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Minus |
Query 4 N*AWSKWSRTAKTACGADGKTGRLRHDPT*T*P*CLLMHGDRRNRKRRTG 153 +*AWS+WS A+ AC A G+ RLRHDP *T*P* HGDRR+++ TG Subject 5728 S*AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTG 5877
Grapevine rupestris vein feathering virus isolate Mauzac, complete genome
Sequence ID: NC_034205.1 Length: 6730 Number of Matches: 6
Range 1: 5727 to 5888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 54/54(100%) | 0/54(0%) | Plus/Plus |
Query 3 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR 164 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR Subject 5727 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR 5888
Range 2: 5729 to 5887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 42/53(79%) | 0/53(0%) | Minus/Minus |
Query 5 RWRELSME*VE*DSQDSLWSRWENRETSTRPNLNMTLMSSDAWRQKKSKTADW 163 R RELSME*VE +SQ+SL SRWE ETSTRP+LN+TL+SS+AWRQKKSKTADW Subject 5729 RCRELSME*VEYESQESL*SRWEKSETSTRPSLNITLISSEAWRQKKSKTADW 5887
Range 3: 5727 to 5885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 30/53(57%) | 0/53(0%) | Minus/Minus |
Query 3 LERIEHGVSGVGQPRQLVEQMGKQGDFDTTQLEHDLDVF*CMATEEIENGGLV 161 L+ +EHGV GV +P +LV+Q+G++ DFDTTQLEH+LD+ MATEE+++ LV Subject 5727 LQGVEHGVGGV*EPGELVKQVGEK*DFDTTQLEHNLDILRGMATEEVKDR*LV 5885
Range 4: 5728 to 5877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Minus |
Query 4 N*AWSKWSRTAKTACGADGKTGRLRHDPT*T*P*CLLMHGDRRNRKRRTG 153 +*AWS+WS A+ AC A G+ RLRHDP *T*P* HGDRR+++ TG Subject 5728 S*AWSRWSMRARRACEAGGRKVRLRHDPA*T*P*YPPRHGDRRSQRPLTG 5877
Grapevine rupestris vein feathering virus isolate TRAJ3 BR polyprotein gene, partial cds
Sequence ID: KX828705.1 Length: 6549 Number of Matches: 4
Range 1: 5669 to 5830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 53/54(98%) | 0/54(0%) | Plus/Plus |
Query 3 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR 164 YQSAVFDFFCRHASEDIKVMFKLGRVE+SLFSHLLHKLSWLSYSTYSMLNSLQR Subject 5669 YQSAVFDFFCRHASEDIKVMFKLGRVEISLFSHLLHKLSWLSYSTYSMLNSLQR 5830
Range 2: 5674 to 5829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 41/52(79%) | 0/52(0%) | Minus/Minus |
Query 8 RWRELSME*VE*DSQDSLWSRWENRETSTRPNLNMTLMSSDAWRQKKSKTAD 163 R RELSME*VE*DSQ+SL SR E RE STRP+LN+TL+SS+A RQKKSKTAD Subject 5674 RCRELSME*VE*DSQESL*SR*EKREISTRPSLNITLISSEA*RQKKSKTAD 5829
Range 3: 5669 to 5827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 26/53(49%) | 0/53(0%) | Minus/Minus |
Query 3 LERIEHGVSGVGQPRQLVEQMGKQGDFDTTQLEHDLDVF*CMATEEIENGGLV 161 L+RIEHGVSGV QP +LV+QM ++ D D +LEH D+ + T+E+++ GL+ Subject 5669 LQRIEHGVSGVRQPGELVKQMREERDLDAAELEHHFDILRSVTTKEVKDCGLI 5827
Grapevine rupestris vein feathering virus isolate CHASS, complete genome
Sequence ID: KY513702.1 Length: 6716 Number of Matches: 4
Range 1: 5728 to 5889 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 53/54(98%) | 0/54(0%) | Plus/Plus |
Query 3 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR 164 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLH+LSWLSYSTYSMLNSLQR Subject 5728 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHRLSWLSYSTYSMLNSLQR 5889
Range 2: 5733 to 5888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 43/52(83%) | 0/52(0%) | Minus/Minus |
Query 8 RWRELSME*VE*DSQDSLWSRWENRETSTRPNLNMTLMSSDAWRQKKSKTAD 163 RWRELSME*VE +SQ+SL S+ E RETSTRP+LNMTLMSS+AWRQKKSKTAD Subject 5733 RWRELSME*VEYESQESL*SK*EKRETSTRPSLNMTLMSSEAWRQKKSKTAD 5888
Range 3: 5728 to 5886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 32/53(60%) | 0/53(0%) | Minus/Minus |
Query 3 LERIEHGVSGVGQPRQLVEQMGKQGDFDTTQLEHDLDVF*CMATEEIENGGLV 161 LER+EHGVSGV +P + V+Q+ ++GDFD T+LEHD DV * +ATEEI++ GL+ Subject 5728 LERVEHGVSGV*EPGEPVKQVREEGDFDATKLEHDFDVL*SVATEEIKDSGLI 5886
Range 4: 5726 to 5884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 31/53(58%) | 0/53(0%) | Minus/Minus |
Query 1 GEN*AWSKWSRTAKTACGADGKTGRLRHDPT*T*P*CLLMHGDRRNRKRRTGK 159 GE+*AWSKWS A+ AC A + GRLR D *T* *C L GDRRN+++R K Subject 5726 GES*AWSKWSMRARRACEASERRGRLRRDQA*T*L*CPLKRGDRRNQRQRIDK 5884
Grapevine rupestris vein feathering virus replicase associated polyprotein mRNA, partial cds
Sequence ID: AY128949.1 Length: 1791 Number of Matches: 3
Range 1: 780 to 941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 46/54(85%) | 0/54(0%) | Plus/Plus |
Query 3 YQSAVFDFFCRHASEDIKVMFKLGRVEVSLFSHLLHKLSWLSYSTYSMLNSLQR 164 YQSAVFDFFCRHA ED+KVMFKLGRVEVSLF+HLL KL+WLSYS+Y+ LNSLQR Subject 780 YQSAVFDFFCRHAPEDVKVMFKLGRVEVSLFAHLLSKLTWLSYSSYAYLNSLQR 941
Range 2: 779 to 940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 38/54(70%) | 0/54(0%) | Minus/Minus |
Query 2 RWRELSME*VE*DSQDSLWSRWENRETSTRPNLNMTLMSSDAWRQKKSKTADW* 163 RW E * E*D+Q SL RW RETSTRP+LNMT SS AWRQKKSKTADW* Subject 779 RWSEFR*A*EE*DNQVSLERRWAKRETSTRPSLNMTFTSSGAWRQKKSKTADW* 940
Range 3: 780 to 941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 31/54(57%) | 0/54(0%) | Minus/Minus |
Query 3 ALERIEHGVSGVGQPRQLVEQMGKQGDFDTTQLEHDLDVF*CMATEEIENGGLV 164 ALER+ GV GVGQP QL E++G++ +FD T+ EHDL V MA EE+EN LV Subject 780 ALERV*IGVGGVGQPGQLGEEVGEERNFDATKFEHDLHVLRGMAAEEVENR*LV 941