Nucleotide Sequence (469 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
146.6 | 244.3 | 31% | 1.961e-33 | 41% | HE579658.1 | |
143.4 | 239.8 | 31% | 1.766e-32 | 41% | HE579660.1 | |
136.6 | 237.2 | 29% | 1.961e-30 | 41% | NC_017990.1 | |
136.6 | 237.2 | 29% | 1.961e-30 | 41% | JF716350.1 | |
138.4 | 230.3 | 16% | 5.585e-31 | 42% | HE579578.1 |
Alignments
Uncultured totivirus genomic RNA containing putative RdRp, contig 95.1Hv1_454_1
Sequence ID: HE579658.1 Length: 2684 Number of Matches: 2
Range 1: 1635 to 2069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.6 bits(317) | 0.0 | 67/145(46%) | 0/145(0%) | Plus/Plus |
Query 35 HSEDDFTQSLYIGNTVGRPHRDVDWDDETKKRSQPGKEIHVITSGGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRINTTKTDVAEYVTAGQVWAVLENAPIH 469 ++ DD Q LY+ N VGRPHRDVDWD E KR + +E+ V T G TE+EL ++ TL AE K SF +FYK RA+WMI+GS +GE+ + + K V + G+ VR TKTDVAEYVT ++ VLE IH Subject 1635 YTSDDLPQMLYLANMVGRPHRDVDWDAEVVKRKRVLEEVRVATDLGMLNLTEEELEHEILATLLAEGSLKVKKVQSFENFYKDRASWMIKGSAAGERMLINEYKQVLSEVKELGVTVRQRATKTDVAEYVTYQEILDVLEGVSIH 2069
Range 2: 1613 to 2053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 61/147(41%) | 0/147(0%) | Minus/Minus |
Query 13 SNTAHTCPAVTYSATSVFVVLILTPSPSLLMANQTALSSFATFFSPDIDPRIIQLARFL*KSANEGLLPGL*TASASNVSISIALSSCSVDSRVPPLVITCISLPGCDLFLVSSSQSTSR*GLPTVLPM*SDCVKSSSLCAQTHPTH 453 S+T+ VTYSATSV V L LT +P+ L + T L S + SP DP IIQLAR L*K +N+ SA+ V+ SS SV +P V T S L S+SQSTSR GLPT+ S C +SS + + H Subject 1613 SSTSSISWYVTYSATSVLVALCLTVTPNSLTSLSTCLYSLISILSPAADPLIIQLARSL*KFSNDWTFFTFKLPSANRVANISCSSSSSVKFNIPKSVATRTSSSTRFLLTTSASQSTSRCGLPTMFAKYSICGRSSLVYSNVSAAH 2053
Uncultured totivirus genomic RNA containing putative RdRp, contig 95.1Hv1_454_5
Sequence ID: HE579660.1 Length: 816 Number of Matches: 2
Range 1: 146 to 580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.4 bits(310) | 0.0 | 66/145(46%) | 0/145(0%) | Plus/Plus |
Query 35 HSEDDFTQSLYIGNTVGRPHRDVDWDDETKKRSQPGKEIHVITSGGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRINTTKTDVAEYVTAGQVWAVLENAPIH 469 ++ DD Q LY+ N VGRPHRDVDWD E KR + +E+ V T G TE+EL ++ T AE K SF +FYK RA+WMI+GS +GE+ + + K V + G+ VR TKTDVAEYVT ++ VLE IH Subject 146 YTSDDXPQMLYLANMVGRPHRDVDWDAEVVKRKRVLEEVRVATDLGMLNLTEEELEHEILATXLAEGSLKV*KVQSFENFYKDRASWMIKGSAAGERMLINEYKQVLXEVKELGVTVRQRATKTDVAEYVTYQEILDVLEGVSIH 580
Range 2: 124 to 564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 61/147(41%) | 0/147(0%) | Minus/Minus |
Query 13 SNTAHTCPAVTYSATSVFVVLILTPSPSLLMANQTALSSFATFFSPDIDPRIIQLARFL*KSANEGLLPGL*TASASNVSISIALSSCSVDSRVPPLVITCISLPGCDLFLVSSSQSTSR*GLPTVLPM*SDCVKSSSLCAQTHPTH 453 S+T+ VTYSATSV V L LT +P+ L + T L S + SP DP IIQLAR L*K +N+ SA+ V+ SS SV +P V T S L S+SQSTSR GLPT+ S C SS + + H Subject 124 SSTSSISWYVTYSATSVLVALCLTVTPNSLTSLSTCLYSLISILSPAADPLIIQLARSL*KFSNDWTFYTFKLPSANXVANISCSSSSSVKFNIPKSVATRTSSSTRFLLTTSASQSTSRCGLPTMFAKYSICGXSSLVYSNVSAAH 564
Botrytis porri RNA virus 1 RNA 1, complete genome
Sequence ID: NC_017990.1 Length: 6215 Number of Matches: 3
Range 1: 4004 to 4438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.6 bits(295) | 0.0 | 60/145(41%) | 0/145(0%) | Plus/Plus |
Query 35 HSEDDFTQSLYIGNTVGRPHRDVDWDDETKKRSQPGKEIHVITSGGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRINTTKTDVAEYVTAGQVWAVLENAPIH 469 H+ DD Q LYI N VGRPHR+ DWDDE KKR++ EI + +G + E +L ++ L E + +F FY R NWMI+GS SGE+ + + K + + G+ +R TKTDVAEYV+A V A+L++ IH Subject 4004 HTPDDLVQCLYIANMVGRPHRECDWDDEVKKRTRNVGEIKIARNGKMVPADESQLEEEILQMLLKEGSIRVKKPKTFEQFYSSRGNWMIKGSASGERMLISEYKEIVGQVKGLGVELRERATKTDVAEYVSAQAVLALLDDMAIH 4438
Range 2: 4231 to 4437 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 30/69(43%) | 0/69(0%) | Minus/Minus |
Query 262 CIGAFSNTAHTCPAVTYSATSVFVVLILTPSPSLLMANQTALSSFATFFSPDIDPRIIQLARFL*KSAN 468 C+ S++A+T A TYSATSVFV L+ +PS L +L S + SPD +P IIQ L* +N Subject 4231 CMAMSSSSANTAWADTYSATSVFVARSLSSTPSPLTWPTISLYSDISILSPDAEPLIIQFPLLL*NCSN 4437
Range 3: 3970 to 4137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 24/56(43%) | 0/56(0%) | Minus/Minus |
Query 1 PLVITCISLPGCDLFLVSSSQSTSR*GLPTVLPM*SDCVKSSSLCAQTHPTHSAQI 168 P + IS LFL SSSQS SR GLPT+ M C +SS +C + H +I Subject 3970 PFLAILISPTFLVLFLTSSSQSHSRCGLPTMFAMYRHCTRSSGVC*NSPFAHLLRI 4137
Botrytis porri RNA virus 1 strain GarlicBc 72 segment 1, complete sequence
Sequence ID: JF716350.1 Length: 6215 Number of Matches: 3
Range 1: 4004 to 4438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.6 bits(295) | 0.0 | 60/145(41%) | 0/145(0%) | Plus/Plus |
Query 35 HSEDDFTQSLYIGNTVGRPHRDVDWDDETKKRSQPGKEIHVITSGGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRINTTKTDVAEYVTAGQVWAVLENAPIH 469 H+ DD Q LYI N VGRPHR+ DWDDE KKR++ EI + +G + E +L ++ L E + +F FY R NWMI+GS SGE+ + + K + + G+ +R TKTDVAEYV+A V A+L++ IH Subject 4004 HTPDDLVQCLYIANMVGRPHRECDWDDEVKKRTRNVGEIKIARNGKMVPADESQLEEEILQMLLKEGSIRVKKPKTFEQFYSSRGNWMIKGSASGERMLISEYKEIVGQVKGLGVELRERATKTDVAEYVSAQAVLALLDDMAIH 4438
Range 2: 4231 to 4437 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 30/69(43%) | 0/69(0%) | Minus/Minus |
Query 262 CIGAFSNTAHTCPAVTYSATSVFVVLILTPSPSLLMANQTALSSFATFFSPDIDPRIIQLARFL*KSAN 468 C+ S++A+T A TYSATSVFV L+ +PS L +L S + SPD +P IIQ L* +N Subject 4231 CMAMSSSSANTAWADTYSATSVFVARSLSSTPSPLTWPTISLYSDISILSPDAEPLIIQFPLLL*NCSN 4437
Range 3: 3970 to 4137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 24/56(43%) | 0/56(0%) | Minus/Minus |
Query 1 PLVITCISLPGCDLFLVSSSQSTSR*GLPTVLPM*SDCVKSSSLCAQTHPTHSAQI 168 P + IS LFL SSSQS SR GLPT+ M C +SS +C + H +I Subject 3970 PFLAILISPTFLVLFLTSSSQSHSRCGLPTMFAMYRHCTRSSGVC*NSPFAHLLRI 4137
Uncultured chrysovirus genomic RNA containing putative RdRp, contig 447Pv1_454_1
Sequence ID: HE579578.1 Length: 2218 Number of Matches: 3
Range 1: 741 to 1163 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.4 bits(299) | 0.0 | 63/141(45%) | 0/141(0%) | Plus/Plus |
Query 47 DFTQSLYIGNTVGRPHRDVDWDDETKKRSQPGKEIHVITSGGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRINTTKTDVAEYVTAGQVWAVLENAPIH 469 D QSLY+ N VGRPHRDVDWD E +KR + EI ++ S G E T ++L+ M+ + L+ EA K S FYK+R+ WMI GS SGEK + D K + + G+ +R TK D+AEYVT V VL + IH Subject 741 DVVQSLYMANMVGRPHRDVDWDAEVEKRKRRLGEIRLVGSSGPIEVTIEQLKTMITEMLDEEASIKIAKCQSLEKFYKQRSAWMIGGSASGEKMILSDYKVLIRELTEAGVQLRPKATKVDIAEYVTYEDVEQVLSDIAIH 1163
Range 2: 986 to 1162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 25/59(42%) | 0/59(0%) | Minus/Minus |
Query 292 CIGAFSNTAHTCPAVTYSATSVFVVLILTPSPSLLMANQTALSSFATFFSPDIDPRIIQ 468 CI T T VTYSA S FV L L+ +P+ + + L S FSP+ DP IIQ Subject 986 CIAMSLKTCSTSS*VTYSAMSTFVALGLSCTPASVSSLIRTL*SLRIIFSPEADPPIIQ 1162
Range 3: 740 to 928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 28/63(44%) | 0/63(0%) | Minus/Minus |
Query 46 ASASNVSISIALSSCSVDSRVPPLVITCISLPGCDLFLVSSSQSTSR*GLPTVLPM*SDCVKS 234 AS+SN+S+ + S V S P L IS LF S+SQSTSR G PT+L M C S Subject 740 ASSSNISVIMVFSCSIVTSIGPELPTKRISPNLLFLFSTSASQSTSRCGRPTILAMYRLCTTS 928