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Queries

Nucleotide Sequence (1228 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
123
246
369
492
615
738
861
984
1107
1228

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
151.3 391.8 23% 1.228e-57 30% GU108589.1

Alignments

Grapevine associated chrysovirus 2 isolate Ctg208 putative capsid protein gene, partial cds

Sequence ID: GU108589.1 Length: 945 Number of Matches: 7

Range 1: 244 to 600 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.3 bits(327) 0.0 61/119(51%) 0/119(0%) Plus/Plus
Query       38  DNKHQQTLIQELSNSGVSIEVDDVPRSMFMMEGTCIHANYKRGARKRKWTKHFGDKTVMSDNLHSIERKKPGRRINQKGSTGCTSNRSSVVSPIRGMKSKRENVDDRADEIRDTGADEP  394
                DN+H QT IQELS SGV ++  +VP+S F++EGTCIH N +R ++ +KWTK++G+KT  + NL + +  +  RR   + STG TSNRSSVVSP+RGM+  RE VD+  D I +TG  +P
Subject    244  DNEHAQTFIQELSLSGVQVQAFEVPKSSFVVEGTCIHINRRRTSKHQKWTKYYGEKTTSTGNLPTPDLVRAKRRTLNRSSTGYTSNRSSVVSPLRGMRQARETVDEMVDNIEETGTVDP  600

Range 2: 604 to 867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(197) 0.0 40/88(45%) 0/88(0%) Plus/Plus
Query      401  TFRAKPIEQVLAEEATGRQVAYAAVTPNIMRDEEKERALEAAANVMGGDDLDYFNKLVDRNSLEYVPVVWSKADASEETQFFLIGLNV  664
                T R KPIEQVLAEEATGR     +V PN+ R  + E AL AA  VM G+D +YF+ L+++ +L+ VP +W+K   ++ T  +L+ L++
Subject    604  TNRIKPIEQVLAEEATGRDTRPVSVKPNLRRRPDTEVALSAAQKVMDGEDFEYFHSLIEKTTLKNVPGLWTKPTNNKGTWAYLLTLSL  867

Range 3: 886 to 945 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.3 bits(47) 0.0 6/20(30%) 0/20(0%) Plus/Plus
Query      689  WKLDMQEWAVDHGMGLSLAK  748
                W+ D++ WA++H +   L +
Subject    886  WRRDIKVWAIEHDLERQLIR  945

Range 4: 384 to 533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 23/50(46%) 0/50(0%) Minus/Minus
Query      178  IPLMGETTDDLLDVQPVLPFWLIRRPGFFRSIEWRLSDITVLSPKCFVHF  327
                IP  G+TTDDLLDV PVL  + + R    +S   +L    V SP   VHF
Subject    384  IPRSGDTTDDLLDV*PVLLLFNVLRFARTKSGVGKLPVEVVFSP*YLVHF  533

Range 5: 618 to 683 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 13/22(59%) 0/22(0%) Minus/Minus
Query      415  GVTAAYATCLPVASSANTCSIG  480
                G+T       PVASSA+TCSIG
Subject    618  GLTDTGLVSRPVASSASTCSIG  683

Range 6: 709 to 834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 13/42(31%) 0/42(0%) Minus/Minus
Query      506  FTCVCLAPDNRYVFQAVPVDQLVEVIQIITSHHIGRSFQCAF  631
                F    L P   ++ +   + Q V+V++I   HH+  S QC F
Subject    709  FVVCWLRP*PWHILEGCFLYQAVKVLKIFAIHHLLGSRQCHF  834

Range 7: 288 to 350 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 11/21(52%) 0/21(0%) Minus/Minus
Query       82  IQVPSIMNIDLGTSSTSIDTP  144
                +QVPS  N D GTS+    TP
Subject    288  MQVPSTTNDDFGTSNACTCTP  350

Nucleotide Sequence (376 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
376

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
52.6 52.6 18% 2.636e-05 30% GU108589.1
48.5 48.5 13% 0.0004403 40% AJ781398.1

Alignments

Grapevine associated chrysovirus 2 isolate Ctg208 putative capsid protein gene, partial cds

Sequence ID: GU108589.1 Length: 945 Number of Matches: 1

Range 1: 169 to 369 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.6 bits(110) 0.0 20/67(30%) 0/67(0%) Plus/Plus
Query       11  CDRTKTGNKSGIVNVLKNGKSDKYQINPYKDMLMDEIERGGIDLSQTDVPDSSFIIEGVCIYKSRKR  211
                C     G + G++  +  GK D    N +    + E+   G+ +   +VP SSF++EG CI+ +R+R
Subject    169  CRTAGFGVERGLLQTMLQGKGDLTSDNEHAQTFIQELSLSGVQVQAFEVPKSSFVVEGTCIHINRRR  369

Cherry chlorotic rusty spot associated chrysovirus CP gene for putative coat protein, segment 2, genomic RNA

Sequence ID: AJ781398.1 Length: 3125 Number of Matches: 1

Range 1: 1491 to 1640 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.5 bits(101) 0.0 20/50(40%) 0/50(0%) Plus/Plus
Query       35  KSGIVNVLKNGKSDKYQINPYKDMLMDEIERGGIDLSQTDVPDSSFIIEG  184
                K+G + ++KN K D +  NPY ++L DEI++G I      +PD  F I G
Subject   1491  KNGGIIMMKNAKKDGHAQNPYLEVLKDEIKKGRIIYDTKRIPDGDFTIAG  1640