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Nucleotide Sequence (518 letters)

Query ID:ds2016-56_135
Query definition:No definition line
Query length:156
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
52
104
156
208
260
312
364
416
468
518

Descriptions

Alignments

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997472.1 Length: 4655 Number of Matches: 1

Range 1: 1145 to 1657 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 51/171(30%) 0/171(0%) Plus/Plus
Query        5  WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY  517
                +MG++  + NYAS    WR+AF+  +E   +L     RAA+ SV  GKE+ T  N + +++++   +  V +V    ++E GYP S  +  V   VSG+L       +     HL     + + E   + P+DALR+A  YR+FGHE+      +  +   + P     +Y
Subject   1145  FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY  1657

Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997474.2 Length: 3666 Number of Matches: 1

Range 1: 182 to 694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 51/171(30%) 0/171(0%) Plus/Plus
Query        5  WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY  517
                +MG++  + NYAS    WR+AF+  +E   +L     RAA+ SV  GKE+ T  N + +++++   +  V +V    ++E GYP S  +  V   VSG+L       +     HL     + + E   + P+DALR+A  YR+FGHE+      +  +   + P     +Y
Subject    182  FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY  694

Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: NC_020903.1 Length: 4655 Number of Matches: 1

Range 1: 1145 to 1657 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 51/171(30%) 0/171(0%) Plus/Plus
Query        5  WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY  517
                +MG++  + NYAS    WR+AF+  +E   +L     RAA+ SV  GKE+ T  N + +++++   +  V +V    ++E GYP S  +  V   VSG+L       +     HL     + + E   + P+DALR+A  YR+FGHE+      +  +   + P     +Y
Subject   1145  FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY  1657

Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds

Sequence ID: JN997473.1 Length: 4619 Number of Matches: 1

Range 1: 1149 to 1634 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 51/162(31%) 0/162(0%) Plus/Plus
Query        5  WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPY  490
                W+GIY  + N+A    +W +AF+S +    +L +   R AM S+  GKE  +  +++C+L ++   +  V+++     I+  +P       VPA+VSG+LL G V  +Y  + HL   Q I +  D ++  ++A  LAN+YR+FG++V+ E   S  ++  Y
Subject   1149  WIGIYGMVSNFAEDCSDWTDAFISSDAELGILSTVEARPAMISLVTGKETNSCFSNNCFLTYDLSGMYGVKQLIVDEKIDPNHPGVILFDTVPAFVSGSLLMGAVATDYPVLKHLEPHQHIKVERDGLLGAREAAMLANSYRLFGNDVIIEHFRSAEVYPTY  1634

Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052

Sequence ID: LC075489.1 Length: 4455 Number of Matches: 1

Range 1: 1122 to 1562 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 47/147(32%) 0/147(0%) Plus/Plus
Query        5  WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHE  445
                W+G++  + NY+  + +WR A  S +    +L +P  RAA+ S+  GKE+ T  N++C + ++  +++ V+ +    ++E+GYP   +L  +P YVSG+L+ G V  E   ++HL    S  +     ++P DA + A+ YR+FGH+
Subject   1122  WVGLHTLVSNYSRDMRDWRPAVESYDAELAILATPESRAALVSLVTGKEIFTCMNNNCHITYDLSNMSNVKHLDEYVVLEQGYPSKLKLDGLPPYVSGSLILGSVACELQEVAHLHSSYSFQVSSYNDLDPVDAGKAASTYRLFGHD  1562