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Queries

Nucleotide Sequence (648 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
65
130
195
260
325
390
455
520
585
648

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
424.9 1453.1 25% 3.441e-118 38% NC_003604
350.2 823.8 29% 1.047e-95 33% NC_018458
335.1 942.8 43% 3.731e-91 40% NC_016404
328.7 732.0 31% 3.184e-89 34% NC_003602
297.1 676.9 48% 1.048e-79 29% NC_011106

Alignments

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 13

Range 1: 4317 to 4898 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
424.9 bits(921) 0.0 181/194(93%) 0/194(0%) Plus/Plus
Query       25  AKAGQTIACFAHSVLCRFGPILRQTEKALRELLPENVMIYSQKNYMDLDKWAKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPXXXXXXXXXXXXMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYHMDRNTPMCFAGDDMYSPGILRVKKDYEATLEQLTLEAKAHNSDEPLLCGWRMNP  606
                AKAGQTIACFAHSVLCRFGPILRQTEKALRELLPE +MIYSQK YMDLDKWAKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPE+LI+EYEELKLMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYH+DRNTPMCFAGDDMYSPGILRVKKDYEATL+QLTL+AK H S+EPL CGWRM+P
Subject   4317  AKAGQTIACFAHSVLCRFGPILRQTEKALRELLPEKLMIYSQKKYMDLDKWAKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYHIDRNTPMCFAGDDMYSPGILRVKKDYEATLDQLTLKAKVHISEEPLFCGWRMSP  4898

Range 2: 4631 to 4807 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 53/59(90%) 0/59(0%) Minus/Minus
Query      339  FFTLRIPGEYMSSPAKHIGVFRSMW*RIQLNTMLQTVLKKKVPNSPENLITAKSPKAHP  515
                FFTLR+PGEY+SSPAKHIGVF SMW*RIQLNTML TVLKKKVPNSPENLITA+SP AHP
Subject   4631  FFTLRMPGEYISSPAKHIGVFLSMW*RIQLNTMLHTVLKKKVPNSPENLITARSPNAHP  4807

Range 3: 4307 to 4534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 57/76(75%) 0/76(0%) Minus/Minus
Query       15  CDLSKAS*SESVPIMLSTQVFAHLSRSI*FFCE*IITFSGRSSLNAFSVCRRMGPNRHKTE*AKHAMVCPAFAIHP  242
                CDLS AS*SESVPIMLST V AHLS+S+ FF E I++FSGRSS +AFSV RRMGPN H TE*AK AMVCPA A  P
Subject   4307  CDLSNAS*SESVPIMLSTHVLAHLSKSMYFF*EYIMSFSGRSSRSAFSV*RRMGPNLHSTE*AKQAMVCPALASTP  4534

Range 4: 4549 to 4632 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 18/28(64%) 0/28(0%) Minus/Minus
Query      257  PSSALTPRIP*LAPRATERSAALLPPGP  340
                PSSA  PR P*L  RA ERSA   PP P
Subject   4549  PSSA*APRTP*LNLRAIERSARPPPPSP  4632

Range 5: 4868 to 4897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 8/10(80%) 0/10(0%) Minus/Minus
Query      576  GFILHPQRRG  605
                G ILHPQ+RG
Subject   4868  GLILHPQKRG  4897

Range 6: 4658 to 4897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 52/80(65%) 0/80(0%) Plus/Plus
Query      366  DEVLRRIRDLLLQHRLQHGVQLYALPHGPEHPDVLCGGRHVFTRNSKGKEGLRGHPRTADTRGQSA*L*RTPSLRMENEP  605
                DEVLR IR LLLQHR+QHGV LYALPH  E+PDVLCGG +VF R+S+ +EGLR H R  DT  QS  +* TP L +E+EP
Subject   4658  DEVLRGIRHLLLQHRVQHGV*LYALPHRQEYPDVLCGG*YVFARHSESEEGLRSHSRPVDT*SQSPYI*GTPLLWVEDEP  4897

Range 7: 4297 to 4590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 43/98(44%) 0/98(0%) Plus/Plus
Query        5  WVCLGESQRRGRPSHALLTRFYADSGPSYGRQKRH*GNFCQRM**STHRRIIWISISGQRPGWRA*WERTRITRPLIDHRMKRFWTWR*KCCASFCGP  298
                W   G   RR +PS   L R   DSGP   + ++  G+ C R  * T R+  W  I+G R G RA*W RT  TR   DH+ ++ WTWR + CASF GP
Subject   4297  WKRGGWMLRRDKPSPVSLIRCCVDSGPFCVKLRKRYGSSCPRSS*YTLRKSTWTWINGLRRG*RA*WGRTPTTRHSTDHKTRKCWTWRWRSCASFYGP  4590

Range 8: 4657 to 4887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 52/77(68%) 0/77(0%) Plus/Plus
Query      365  **GSQANSGPSSSTPFATWCSVVCATTWTGTPRCALRGTTCIHQEF*G*RRTTRPPSNS*HSRPKRITLTNPFSADG  595
                **GS  NS PSSSTP ATWC VVC TT TG PRCALRG  CI Q F* *RR T+P S S*H +PK I L NP S  G
Subject   4657  **GSPGNSAPSSSTPCATWCLVVCVTT*TGIPRCALRGMICIRQAF*E*RRITKPLSTS*HLKPKSIYLRNPSSVGG  4887

Range 9: 4322 to 4636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 51/105(49%) 0/105(0%) Plus/Plus
Query       30  GGADHRMLCSLGFMPIRAHPTADRKGIKGTSARECDDLLTEELYGSR*VGKDLGGEHDGNXXXXXXXXXITXXXXXXXXXRSAALLSVARGANQGIRGVKADDGV  344
                GG +HR+  S G + IRAH  ++ +   G  ARE  D+L+E+++G  *+G D+G EHDG+GL LRG+  IT  + +G GG   ALLS+AR  NQG+RG  ADDG+
Subject   4322  GGTNHRLFRSFGAV*IRAHSASN*ESATGAPAREAHDILSEKVHGLG*MG*DVGREHDGDGLRLRGIRQITRRESAGLGGGGLALLSMARRFNQGVRGA*ADDGM  4636

Range 10: 4479 to 4892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 82/138(59%) 0/138(0%) Minus/Minus
Query      187  HSPSAEKGFVRVMRFGLECQLFEGGLVVLLYP*NSW*IHVVPRKAHRGVPXXXXXXXXXXXXANGVEEEGPEFA*EPHHS*ITQSAPHHQXXXXXXXXXXLGPQKEAQHFYLQVQNLFIL*SIKGLVIRVRSHHALHP  600
                H P  E+GF+R M FG +CQL E G V+LL+  N+W IH++PRKAHRG+PV+VV HTT+HHVA+GVEEEG EF  EPHH  +     HHQL LLV  D*+ GP KEAQ  +LQVQ+  +L*S++ LV+ VR HHAL+P
Subject   4479  HPPPTEEGFLRYMDFGFKCQLVESGFVILLHSQNAWRIHIIPRKAHRGIPVYVVTHTTKHHVAHGVEEEGAEFPGEPHHRQVA*CTSHHQLKLLVLPD*IFGP*KEAQDLHLQVQHFLVL*SVECLVVGVRPHHALYP  4892

Range 11: 4321 to 4464 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 18/48(38%) 0/48(0%) Minus/Minus
Query       29  YRDPYNSSVSRSSHSLAEVPLMPFLSAVGWARIGIKPSEQSMRWSAPP  172
                Y  P   S S S  S A  P+        WARI   P+E++ RW  PP
Subject   4321  YPSPCTFSESIS*ASRAGAPVALSQFDAEWARIYTAPNERNRRWFVPP  4464

Range 12: 4711 to 4896 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 37/62(60%) 0/62(0%) Minus/Minus
Query      419  GSFSIRREGVRQSYALWPRVSAVRGWPRSPSLPLEFLVNTCRPPQSTSGCSGPCGSAYN*TP  604
                GS S  R GV Q Y LW  VS  R W R+PS   E L NT  PPQSTSG S  CG+AYN*TP
Subject   4711  GSSSTHRRGVPQIYGLWL*VSTGREWLRNPSSLSECLANTYHPPQSTSGYSCLCGNAYN*TP  4896

Range 13: 4308 to 4415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 16/36(44%) 0/36(0%) Minus/Minus
Query       16  QKFP*CLFCLP*DGPESA*NRVSKACDGLPRLCDSP  123
                Q+ P*    L  +GPES  +R+S+  DGL RL   P
Subject   4308  QELP*RFLSLTQNGPESTQHRMSETGDGLSRLSIHP  4415

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 9

Range 1: 4375 to 4956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
350.2 bits(758) 0.0 144/194(74%) 0/194(0%) Plus/Plus
Query       25  AKAGQTIACFAHSVLCRFGPILRQTEKALRELLPENVMIYSQKNYMDLDKWAKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPXXXXXXXXXXXXMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYHMDRNTPMCFAGDDMYSPGILRVKKDYEATLEQLTLEAKAHNSDEPLLCGWRMNP  606
                AKAGQTIACF+H+VLC+FGPI+RQTE+ LRELLP NVMIYSQKNY DLD WAKT+V++M+GTDSDYEAFDRSQDEK+LDLEVEVL+FFLWPEELI+EY ELKL M C++G+LA+MRFSGEFGTFFFNT+CNMVF+CMRY++   T +CFAGDDMY+PG+L V+ DYE  L++L+L+AK    D PL CGWRM+P
Subject   4375  AKAGQTIACFSHAVLCKFGPIMRQTERKLRELLPPNVMIYSQKNYSDLDVWAKTYVDTMVGTDSDYEAFDRSQDEKILDLEVEVLKFFLWPEELIREYVELKLQMSCSMGNLAIMRFSGEFGTFFFNTMCNMVFTCMRYNVTDKTRLCFAGDDMYAPGVLEVRTDYEHILDELSLKAKVQVGDRPLFCGWRMSP  4956

Range 2: 4365 to 4589 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 53/75(71%) 0/75(0%) Minus/Minus
Query       15  DLSKAS*SESVPIMLSTQVFAHLSRSI*FFCE*IITFSGRSSLNAFSVCRRMGPNRHKTE*AKHAMVCPAFAIHP  239
                DLS AS*SESVP M+ST VFAH SRS *FFCE*I+TF G SSLN  SV R +GPN HKT * K A+V PAFA  P
Subject   4365  DLSXAS*SESVPTMVSTYVFAHTSRSE*FFCE*IMTFGGSSSLNFLSV*RMIGPNLHKTA*EKQAIVWPAFASTP  4589

Range 3: 4701 to 4859 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 31/53(58%) 0/53(0%) Minus/Minus
Query      351  TLRIPGEYMSSPAKHIGVFRSMW*RIQLNTMLQTVLKKKVPNSPENLITAKSP  509
                T   PG Y+SSPAKH  V       I +NTML  VLKK VPNSPENL+ AK P
Subject   4701  TSSTPGAYISSPAKHNLVLSVTLYLIHVNTMLHIVLKKNVPNSPENLMIAKFP  4859

Range 4: 4580 to 4675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 17/32(53%) 0/32(0%) Minus/Minus
Query      230  TPRIP*LAPRATERSAALLPPGPEPFHPVIYQ  325
                TPR  * AP A  R  AL PPGP    P IY+
Subject   4580  TPRTL*SAPPAIGRI*ALPPPGPISSRPEIYR  4675

Range 5: 4623 to 4913 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 32/97(33%) 0/97(0%) Plus/Plus
Query      273  SAALLSVARGANQGIRGVKADDGVRFG*FSCDEVLRRIRDLLLQHRLQHGVQLYALPHGPEHPDVLCGGRHVFTRNSKGKEGLRGHPRTADTRGQSA  563
                SA +L +A GA+  +RGV+  + +++G     E+   I D+ LQH +QHGV +Y +     +  +LC G +V T  ++G + L  H   A+ +G+ A
Subject   4623  SAQILPMAGGAD*RVRGVETPNELQYGELGNHEIFWGIWDVFLQHNVQHGVHMYEV*RHR*NQIMLCWG*YVRTWRTRGPDRL*AHTGRAELKGKGA  4913

Range 6: 4355 to 4645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 37/97(38%) 0/97(0%) Plus/Plus
Query        5  WVCLGESQRRGRPSHALLTRFYADSGPSYGRQKRH*GNFCQRM**STHRRIIWISISGQRPGWRA*WERTRITRPLIDHRMKRFWTWR*KCCASFCG  295
                W   G  QRR + S   L +  A+   S  RQ+  *G+   RM * T R+I  I + G+R      W    I R  ID R +R+WTWR KC  S  G
Subject   4355  WRKEGWMQRRAKLSPVSLMQSCANLVQSCVRQRES*GSCYPRMS*FTRRKITLIWMCGRRHMSTPWWGLILIMRXSIDLRTRRYWTWRWKCSNSSYG  4645

Range 7: 4377 to 4559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 22/61(36%) 0/61(0%) Plus/Plus
Query       27  KGGADHRMLCSLGFMPIRAHPTADRKGIKGTSARECDDLLTEELYGSR*VGKDLGGEHDGN  209
                KGG ++R+  S   + I ++  +DR+ ++G +  EC DLL E+L  S  VG+D+   H G+
Subject   4377  KGGPNYRLFLSCSLVQIWSNHASDREKVEGAATPECHDLLAEKLL*SGCVGEDICRHHGGD  4559

Range 8: 4733 to 4843 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 18/37(49%) 0/37(0%) Plus/Plus
Query      383  NSGPSSSTPFATWCSVVCATTWTGTPRCALRGTTCIH  493
                N G  SST  ATWCS V   T    P  AL G  C H
Subject   4733  NLGRFSSTQCATWCSHV*GITSQIKPDYALLGMICTH  4843

Range 9: 4543 to 4755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 29/71(41%) 0/71(0%) Minus/Minus
Query      193  VEEEGPEFA*EPHHS*ITQSAPHHQXXXXXXXXXXLGPQKEAQHFYLQVQNLFIL*SIKGLVIRVRSHHAL  405
                VEE+ P+F  + H   +  +A H +  L V  + LL P +E +HF+LQVQ L +L SI+ L+IR+  HH +
Subject   4543  VEEKRPKFPRKSHDCQVPHTAAHLEFQLHVLSNQLLRP*EEFEHFHLQVQYLLVLRSIEXLIIRISPHHGV  4755

Actinidia virus B, complete genome

Sequence ID: Length: 7488 Number of Matches: 11

Range 1: 4286 to 4867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
335.1 bits(725) 0.0 137/194(71%) 0/194(0%) Plus/Plus
Query       25  AKAGQTIACFAHSVLCRFGPILRQTEKALRELLPENVMIYSQKNYMDLDKWAKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPXXXXXXXXXXXXMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYHMDRNTPMCFAGDDMYSPGILRVKKDYEATLEQLTLEAKAHNSDEPLLCGWRMNP  606
                AKAGQTIACF H+VLC+FGP+LR+TEKALR  L +NV+IYSQ NY DLDKW K +V SM+GTDSDYEAFDRSQDE++LD E+EVL+FFLWPEE+I EY+ELKLMMG ++G LAVMRFSGEFGTFFFNT+CNM F+C+RY ++++TP+C+AGDDMY+PG L + K++E TL+QL+L+AK   S EPL CGWRM+P
Subject   4286  AKAGQTIACFCHAVLCKFGPLLRRTEKALRAQLGDNVLIYSQLNYTDLDKWCKNFVPSMLGTDSDYEAFDRSQDERILDFEMEVLKFFLWPEEVINEYKELKLMMGSSMGSLAVMRFSGEFGTFFFNTICNMAFTCLRYKINKDTPICYAGDDMYAPGHLIISKEHEGTLDQLSLKAKVRVSTEPLFCGWRMSP  4867

Range 2: 4276 to 4503 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 46/76(61%) 0/76(0%) Minus/Minus
Query       15  CDLSKAS*SESVPIMLSTQVFAHLSRSI*FFCE*IITFSGRSSLNAFSVCRRMGPNRHKTE*AKHAMVCPAFAIHP  242
                CDLS AS*SESVP +L T+   HLSRS+*F CE + T S   +L AFSV  R GPN H T   KHAMV PAFA  P
Subject   4276  CDLSNAS*SESVPSILGTKFLHHLSRSV*FNCEYMSTLSPSWALKAFSVRLRSGPNLHSTAWQKHAMV*PAFASTP  4503

Range 3: 4600 to 4767 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 36/56(64%) 0/56(0%) Minus/Minus
Query      339  LRIPGEYMSSPAKHIGVFRSMW*RIQLNTMLQTVLKKKVPNSPENLITAKSPKAHP  506
                +R PG YMSSPA HIGV   + *R  +  MLQ VLKKKVPNSPENLITA  P   P
Subject   4600  IR*PGAYMSSPA*HIGVSLLIL*RRHVKAMLQMVLKKKVPNSPENLITASDPMELP  4767

Range 4: 4779 to 4865 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/29(52%) 0/29(0%) Minus/Minus
Query      518  GSFSIRREGVRQSYALWPRVSAVRGWPRS  604
                GSFS RR GV  S +LW  V A  G+P +
Subject   4779  GSFSNRRRGVLYSPSLWLLVIAGLGFPHA  4865

Range 5: 4491 to 4625 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 18/45(40%) 0/45(0%) Minus/Minus
Query      230  QLNHPKRTPSSALTPRIP*LAPRATERSAALLPPGPEPFHPVIYQ  364
                QL  P   PSS     I *  P AT R+  L    P  F PV  Q
Subject   4491  QLVIPWSYPSSI*ALCIH*SPPLATRRTLTLPFRNPGSFRPVTCQ  4625

Range 6: 4534 to 4887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 54/118(46%) 0/118(0%) Plus/Plus
Query      273  SAALLSVARGANQGIRGVKADDGVRFG*FSCDEVLRRIRDLLLQHRLQHGVQLYALPHGPEHPDVLCGGRHVFTRNSKGKEGLRGHPRTADTRGQSA*L*RTPSLRMENEPYPHQTHP  626
                S  +L VARG +  I+  + DDG   G  SCDE+L RIR+LLL H L HG+ + AL     HP++LC G HV TR+    +   G+PR A T+ QS    RTP LR+ENEP  +   P
Subject   4534  SVKVLLVARGGD**IQRAQIDDG*LHGITSCDEILGRIRNLLL*HHL*HGLHVSALQDQ*GHPNMLCWG*HVCTRSPDH*QRA*GNPRPAITKSQSEGEYRTPLLRLENEPLWYSQGP  4887

Range 7: 4285 to 4449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 22/55(40%) 0/55(0%) Plus/Plus
Query       24  RKGGADHRMLCSLGFMPIRAHPTADRKGIKGTSARECDDLLTEELYGSR*VGKDL  188
                R+  +DHRML     M IR  P A R+G KG +      +LT +L+ SR*+ + L
Subject   4285  RESRSDHRMLLPCCAMQIRTTPEAHREGFKGPTG**RAHILTIKLHRSR*MVQKL  4449

Range 8: 4460 to 4672 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 36/71(51%) 0/71(0%) Minus/Minus
Query      199  NGVEEEGPEFA*EPHHS*ITQSAPHHQXXXXXXXXXXLGPQKEAQHFYLQVQNLFIL*SIKGLVIRVRSHH  411
                +GV+EEG EFA E HHS* +  A HHQ  L VF++ LL PQ+E  HF+ ++Q+ F+L* +K L+IR+   H
Subject   4460  DGVKEEGSEFARESHHS**SHGATHHQFELFVFINHLLWPQEEL*HFHFEIQDPFVL*PVKRLIIRICPKH  4672

Range 9: 4715 to 4861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 20/49(41%) 0/49(0%) Minus/Minus
Query      454  HSPSAEKGFVRVMRFGLECQLFEGGLVVLLYP*NSW*IHVVPRKAHRGV  600
                HSP+AE+GF     FG    L  G L++      +W IHV+P  A+ GV
Subject   4715  HSPTAEEGFCTHPHFGF***LV*GSLMLFANDQVTWCIHVIPSIAYWGV  4861

Range 10: 4298 to 4375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 13/26(50%) 0/26(0%) Minus/Minus
Query       37  P*CLFCLP*DGPESA*NRVSKACDGL  114
                P* L C P +  E A*+ +++ACDGL
Subject   4298  P*SLLCAPQEWSEFA*HSMAEACDGL  4375

Range 11: 4404 to 4862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 68/153(44%) 0/153(0%) Plus/Plus
Query      143  THRRIIWISISGQRPGWRA*WERTRITRPLIDHRMKRFWTWR*KCCASFCGPXXXXXXXXXXX**WGALWVI*L**GSQANSGPSSSTPFATWCSVVCATTWTGTPRCALRGTTCIHQEF*G*RRTTRPPSNS*HSRPKRITLTNPFSADGE*  601
                TH     I I+G +  ++    +  I R L  HR K  W  + KC +S CG R *  NT+S +**W A W  *L** S+ANS PSS TP  TW S VC T    TP+ A+ G TC+HQ  *   ++ R P  S H +PK   + NP SA GE*
Subject   4404  THN*TTQI*INGAKTLYQVCLGQILIMRRLTGHRTKGSWISKWKC*SSSCGQRR*LMNTKSSN**WVAPWDH*L**DSRANSEPSSLTPSVTWPSRVCVTRSIRTPQYAMLGMTCMHQVT*SLAKSMREP*TSYH*KPK*G*VQNPSSAVGE*  4862

Grapevine virus B, complete genome

Sequence ID: Length: 7599 Number of Matches: 8

Range 1: 4264 to 4845 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
328.7 bits(711) 0.0 136/194(70%) 0/194(0%) Plus/Plus
Query       25  AKAGQTIACFAHSVLCRFGPILRQTEKALRELLPENVMIYSQKNYMDLDKWAKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPXXXXXXXXXXXXMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYHMDRNTPMCFAGDDMYSPGILRVKKDYEATLEQLTLEAKAHNSDEPLLCGWRMNP  606
                AKAGQTIACF H+VLCRFGP+LRQTEKALR+ L  NVMIYSQKNY DLDKW K +V ++ GTDSDYEAFDRSQDEKVLD EV VL+FFLWPEE+I+EY  LKLMMGC++G LAVMRFSGEFGTFFFNT+CNM F+C++Y +  +TP+C+AGDDMY+PGIL  K +++  L++L L+AK + +  PL CGWRM+P
Subject   4264  AKAGQTIACFCHAVLCRFGPLLRQTEKALRDQLGPNVMIYSQKNYTDLDKWCKGFVHTLDGTDSDYEAFDRSQDEKVLDFEVNVLKFFLWPEEMIEEYVTLKLMMGCSMGSLAVMRFSGEFGTFFFNTICNMGFTCLKYSIRADTPICYAGDDMYAPGILVTKSEFKHILDELQLKAKVNYTRSPLFCGWRMSP  4845

Range 2: 4263 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 48/70(69%) 0/70(0%) Minus/Minus
Query       24  SKAS*SESVPIMLSTQVFAHLSRSI*FFCE*IITFSGRSSLNAFSVCRRMGPNRHKTE*AKHAMVCPAFA  233
                S AS*SESVP  + T+   HLSRS+*FF E*IITF    SLNAFSVC   GPNR  T * KHAMVCPAFA
Subject   4263  SNAS*SESVPSSV*TKPLHHLSRSV*FFWE*IITFGPS*SLNAFSVCLSSGPNRQSTA*QKHAMVCPAFA  4472

Range 3: 4450 to 4650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 31/67(46%) 0/67(0%) Minus/Minus
Query      211  NGVEEEGPEFA*EPHHS*ITQSAPHHQXXXXXXXXXXLGPQKEAQHFYLQVQNLFIL*SIKGLVIRV  411
                +GVE+E P+FA + H+S    +A HHQL   + L     P+KE ++ YL+V + FIL SI+ LVIRV
Subject   4450  DGVEKECPKFAAKAHNSETAHAASHHQLECYILLYHFFRPEKEFEYIYLKV*HFFILTSIECLVIRV  4650

Range 4: 4717 to 4839 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 14/41(34%) 0/41(0%) Minus/Minus
Query      478  HSPSAEKGFVRVMRFGLECQLFEGGLVVLLYP*NSW*IHVV  600
                HSP+ E+G   V+  G + +L +  L   L   N+W +H+V
Subject   4717  HSPTTEEGTSCVVHLGFQLELIKYVLEFGLCDKNAWGVHIV  4839

Range 5: 4521 to 4853 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 39/111(35%) 0/111(0%) Plus/Plus
Query      282  LLSVARGANQGIRGVKADDGVRFG*FSCDEVLRRIRDLLLQHRLQHGVQLYALPHGPEHPDVLCGGRHVFTRNSKGKEGLRGHPRTADTRGQSA*L*RTPSLRMENEPYPH  614
                +LS+A   ++G+   +ADDG++ G   C  + RRI D+L QH L HGV L  + H   +  +LC  R+V  R+S  K  ++ H   A    Q     ++P L +ENE   H
Subject   4521  ILSLA*RNDRGVCNTQADDGMQHGQSRCYAL*RRIWDILFQHHL*HGVHLPKVQHKGRYAHLLCW*RYVRPRHSCHKVRIQAHT**APIESQGELHKKSPLLWLENESLWH  4853

Range 6: 4275 to 4400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 18/42(43%) 0/42(0%) Plus/Plus
Query       36  ADHRMLCSLGFMPIRAHPTADRKGIKGTSARECDDLLTEELY  161
                A+H +L S G +PI     A+ KGIKG++  + DDL  E+L+
Subject   4275  ANHSVLLSCGALPIWTTAEANGKGIKGSAWAKRDDLFPEKLH  4400

Range 7: 4578 to 4751 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 32/58(55%) 0/58(0%) Minus/Minus
Query      339  FTLRIPGEYMSSPAKHIGVFRSMW*RIQLNTMLQTVLKKKVPNSPENLITAKSPKAHP  512
                F  R+PG Y+SSPA  +GV   M    Q+N MLQ VLKK VPNSP   ITA+ P  HP
Subject   4578  FVTRMPGAYISSPA*QMGVSALMLYFRQVNPMLQMVLKKNVPNSPLKRITARLPMLHP  4751

Range 8: 4274 to 4408 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 18/45(40%) 0/45(0%) Minus/Minus
Query       35  RDPYNSSVSRSSHSLAEVPLMPFLSAVGWARIGIKPSEQSMRWSA  169
                +D  N S +RSS      PLMPF  A    +IG  P ++S  W A
Subject   4274  QDQCNFSGNRSSRLAQADPLMPFPFASAVVQIGKAPHDKSTLWFA  4408

Grapevine virus E, complete genome

Sequence ID: Length: 7564 Number of Matches: 10

Range 1: 4303 to 4884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.1 bits(642) 0.0 129/194(66%) 0/194(0%) Plus/Plus
Query       25  AKAGQTIACFAHSVLCRFGPILRQTEKALRELLPENVMIYSQKNYMDLDKWAKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPXXXXXXXXXXXXMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYHMDRNTPMCFAGDDMYSPGILRVKKDYEATLEQLTLEAKAHNSDEPLLCGWRMNP  606
                AKAGQTIACF+H+VLC+FGPILR+TE  LR++LP +VMI+SQKNY DLDKW+K +     GTDSDYEAFDRSQD  +L  E+ +LR FLWPEELI+EY+ LKLMMGC LGDLAVMRFSGEFGTFFFNT+CNM FS +RY +    P+ FAGDDM +PG L V +   + L QL L+AK + SD PL CGWRM+P
Subject   4303  AKAGQTIACFSHAVLCKFGPILRKTEAQLRKILPPHVMIFSQKNYEDLDKWSKDYFNDHSGTDSDYEAFDRSQDGAILAFEICLLRHFLWPEELIEEYKTLKLMMGCQLGDLAVMRFSGEFGTFFFNTMCNMAFSYLRYQLGPYQPIAFAGDDMVAPGRLVVNESMNSVLNQLELKAKVNYSDSPLFCGWRMSP  4884

Range 2: 4293 to 4454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 35/54(65%) 0/54(0%) Minus/Minus
Query       15  HLSRSI*FFCE*IITFSGRSSLNAFSVCRRMGPNRHKTE*AKHAMVCPAFAIHP  176
                HLS+S *FFCE IIT  GR  LN  SV R+MGPN H T * KHA+VCPA A  P
Subject   4293  HLSKSS*FFCEKIITCGGRIFLN*ASVFRKMGPNLHNTA*EKHAIVCPALASEP  4454

Range 3: 4617 to 4703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 22/29(76%) 0/29(0%) Minus/Minus
Query      339  NTMLQTVLKKKVPNSPENLITAKSPKAHP  425
                N ML  VLKK VPNSPENLITA+SP  HP
Subject   4617  NAMLHIVLKKNVPNSPENLITARSPSWHP  4703

Range 4: 4737 to 4790 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/18(67%) 0/18(0%) Minus/Minus
Query      459  FTLRIPGEYMSSPAKHIG  512
                FT  +PG  MSSPAK IG
Subject   4737  FTTSLPGATMSSPAKAIG  4790

Range 5: 4482 to 4520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/13(92%) 0/13(0%) Minus/Minus
Query      204  CDLSKAS*SESVP  242
                CDLSKAS*S SVP
Subject   4482  CDLSKAS*SLSVP  4520

Range 6: 4554 to 4790 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 28/79(35%) 0/79(0%) Plus/Plus
Query      276  AALLSVARGANQGIRGVKADDGVRFG*FSCDEVLRRIRDLLLQHRLQHGVQLYALPHGPEHPDVLCGGRHVFTRNSKGK  512
                A    +ARGA++G++  + DDG+  G   CDEVL  + ++ LQ+ + HG+ +  L  GP   +  CG  H  TR + G+
Subject   4554  AQTFPMARGADRGVQDPQTDDGMPTGGPGCDEVLW*VWNIFLQYYV*HGILISPLSIGPLPANSFCGR*HGGTR*TCGE  4790

Range 7: 4313 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 22/50(44%) 0/50(0%) Plus/Plus
Query       35  GRPSHALLTRFYADSGPSYGRQKRH*GNFCQRM**STHRRIIWISISGQR  184
                G+  H  LT   A+  P   +Q+  *G FC   **S+HRRI  I I+G R
Subject   4313  GKQ*HVSLTLCCANLAPFCEKQRLS*GKFCHHT**SSHRRITRIWINGAR  4462

Range 8: 4487 to 4555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 10/23(43%) 0/23(0%) Plus/Plus
Query      209  RTRITRPLIDHRMKRFWTWR*KC  277
                +T  T+PLID RM  +   R  C
Subject   4487  QTATTKPLIDRRMVLY*LLRYAC  4555

Range 9: 4489 to 4689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 28/67(42%) 0/67(0%) Minus/Minus
Query      211  NGVEEEGPEFA*EPHHS*ITQSAPHHQXXXXXXXXXXLGPQKEAQHFYLQVQNLFIL*SIKGLVIRV  411
                + +EE+  +   EPHHS + Q A HHQ   LV L  LL P + ++  YL+     IL SIKG V+ V
Subject   4489  HSIEEKCSKLTREPHHSQVPQLASHHQFEGLVLLYQLLWP*EMSEQAYLKS*YSTILRSIKGFVVAV  4689

Range 10: 4741 to 4884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 14/48(29%) 0/48(0%) Minus/Minus
Query      463  RVHSPSAEKGFVRVMRFGLECQLFEGGLVVLLYP*NSW*IHVVPRKAH  606
                R HSP+AE   + V+    + +L    +  L++  ++W  HV+ RK++
Subject   4741  RTHSPTAE*RRITVIHLCFKLKLV*N*VHGLVHHKSTWCHHVISRKSY  4884

Nucleotide Sequence (352 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
352

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
205.4 713.9 36% 1.718e-52 48% NC_003604
113.8 113.8 24% 6.637e-25 52% NC_010434
126.6 197.3 29% 9.116e-29 56% NC_016509
119.7 169.8 26% 1.069e-26 45% NC_018458
95.9 95.9 22% 1.59e-19 44% NC_004667

Alignments

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 6

Range 1: 2007 to 2330 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 86/108(80%) 0/108(0%) Minus/Plus
Query       29  GLDDSYDHCLIQRYSAGGSIGFHADDEPCYLPGGSVVTVNLYGDATFEVKENTSGRIEKVELRDGDVYVMGPGMQQTHKHRVTSHTVCRPKHTQHILARSEERRVGKE  352
                GLDDSYDHCLIQRY+AGGSIGFHADDEPCYLPGGSVVTVNL+GDATFEVKEN SG+IEK EL DGDVYVMGPGMQQTHKHRVTSHT  R   T        E R G E
Subject   2007  GLDDSYDHCLIQRYTAGGSIGFHADDEPCYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGMQQTHKHRVTSHTDGRCSITLRNKTVDYEARKGDE  2330

Range 2: 2009 to 2227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 63/73(86%) 0/73(0%) Plus/Minus
Query      132  IPGPITYTSPSRSSTFSILPDVFSLTSNVASPYKFTVTTEPPGR*QGSSSAWNPILPPAEYLWIRQ*S*LSSR  350
                IPGPITYTSPS SS FSI PD FS TS VASP K TVTTEPPGR* GSSSAWNPILPPA YLWIRQ*S*LSSR
Subject   2009  IPGPITYTSPSCSSFFSIFPD*FSFTSKVASPCKLTVTTEPPGR*HGSSSAWNPILPPAVYLWIRQ*S*LSSR  2227

Range 3: 2010 to 2285 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 48/92(52%) 0/92(0%) Plus/Minus
Query       74  GVFGAANGVRSHSVLVSLLHPGSHHVHVPITQFYFLYPPGCILLDFKRGIPVQVHGHYRTPR*ITGLIICMESYTSAC*VPLDQTMIITII*  349
                G   AA  VR +SVLVSLLH  +HHVH+P+     L  PG IL   K  + V + GH  TP *+   IIC+ESYT+ C V LDQTMI+ II*
Subject   2010  GDAAAAIRVRGNSVLVSLLHSWTHHVHIPVV*LLLLDLPGLILFHLKSSVAV*IDGHDGTPW*VAWFIICVESYTAPCRVSLDQTMIVAII*  2285

Range 4: 2012 to 2290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 52/93(56%) 0/93(0%) Minus/Plus
Query       69  R**L*SLSDPKVLSRRKYRIPCR**ALLSTWGFCSDRELVRGCHV*SQGEYIREDRESRTA*WGRVRDGTRDAANSQAQSDFSHRLPPQTHPT  347
                R**L SLSDPK+  R +YRIP R** +L T GF  DR+  R  + * + E IREDRE      G VRDG+R+A NSQAQS  SH  P Q HP+
Subject   2012  R**LRSLSDPKIHGRGQYRIPRR**TMLPTRGFRRDRQFTRRRYF*GERESIREDREEGATRRGCVRDGSRNATNSQAQSYLSHGWPLQHHPS  2290

Range 5: 2011 to 2271 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 44/87(51%) 0/87(0%) Plus/Minus
Query       88  GKRCEKSLCACEFAASRVPSRTRPHHAVLLSLSSRMYSP*LQTWHPRTSSRSLQNPQVDNRAHHLHGILYFRLLSTFGSDNDHNYHL  348
                G  CE+ LCACEF A   PSRT P      S SSR+ S   Q    R + RS +NP V +  HHL GILY  L   FGSDND +YHL
Subject   2011  GHPCER*LCACEFVAFLDPSRTHPRRVAPSSRSSRIDSLSPQK*RRRVN*RSRRNPLVGSMVHHLRGILYCPLPCIFGSDNDRSYHL  2271

Range 6: 2038 to 2286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 40/83(48%) 0/83(0%) Minus/Plus
Query       73  SKGTQQAEV*DSMQMMSPVIYLGVL**P*TCTGMPRLKSRRIHPGG*RK*NCVMGTCT*WDPGCSKLTSTE*LLTPFAAPNTP  321
                SK T+Q  V*DS QMM+   Y GV  *P   T    L+ +RI+PG  R+ +   G CT*W   C+KLTSTE  LT  AA  +P
Subject   2038  SKDTRQGAV*DSTQMMNHATYQGVPS*PSIYTATLLLR*KRINPGRSRRRSYTTGMCT*WVQECNKLTSTELPLTRMAAAASP  2286

Lolium latent virus, complete genome

Sequence ID: Length: 7674 Number of Matches: 1

Range 1: 2296 to 2547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 44/84(52%) 0/84(0%) Minus/Plus
Query      101  GLDDSYDHCLIQRYSAGGSIGFHADDEPCYLPGGSVVTVNLYGDATFEVKENTSGRIEKVELRDGDVYVMGPGMQQTHKHRVTS  352
                GLD+SYDHCLIQRY     +G HADDE CY P  ++VT+NLYG+A F ++ NT    E + L+  D+  M  GMQ TH+H V S
Subject   2296  GLDESYDHCLIQRYRKHARVGLHADDEECYEPDSTIVTLNLYGNADFLIERNTDKASETITLQHNDMLFMPSGMQVTHRHAVCS  2547

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 5435 to 5683 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.6 bits(270) 0.0 52/83(63%) 0/83(0%) Minus/Plus
Query      101  LDDSYDHCLIQRYSAGGSIGFHADDEPCYLPGGSVVTVNLYGDATFEVKENTSGRIEKVELRDGDVYVMGPGMQQTHKHRVTS  349
                LD+SYDHCLIQ+Y  G +IGFHADDE CY  G SVVTVNL G A F V+ N +G I +  L DGDV+VM PGMQ+  KH V S
Subject   5435  LDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVES  5683

Range 2: 5437 to 5652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 40/72(56%) 0/72(0%) Plus/Minus
Query      132  IPGPITYTSPSRSSTFSILPDVFSLTSNVASPYKFTVTTEPPGR*QGSSSAWNPILPPAEYLWIRQ*S*LSS  347
                IPG IT TSPS     +I P +F  T   A P+KFTVTT  P  *  SSSA NPI+ P  Y  I+Q*S*LSS
Subject   5437  IPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ*S*LSS  5652

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 2

Range 1: 2041 to 2286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 45/82(55%) 0/82(0%) Minus/Plus
Query      107  GLDDSYDHCLIQRYSAGGSIGFHADDEPCYLPGGSVVTVNLYGDATFEVKENTSGRIEKVELRDGDVYVMGPGMQQTHKHRV  352
                GL + YDHCL+Q+Y   G+I FHADDE CYLPG  VVT+N++G A F +KEN    + +V L DGDV VM  G+Q+ +KH V
Subject   2041  GLGEEYDHCLVQKYEKDGAIPFHADDEKCYLPGSCVVTLNMHGTAEFMLKENGKEEVHRVTLEDGDVLVMPEGVQENYKHSV  2286

Range 2: 2064 to 2258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 29/65(45%) 0/65(0%) Plus/Minus
Query      135  PGPITYTSPSRSSTFSILPDVFSLTSNVASPYKFTVTTEPPGR*QGSSSAWNPILPPAEYLWIRQ  329
                P  IT TSPS   T       FS + N A P  F VTT+ PGR*  SSSA   + P   Y   RQ
Subject   2064  PSGITRTSPSSRVTLCTSSFPFSFSMNSAVPCIFRVTTQEPGR*HFSSSA*KGMAPSFSYF*TRQ  2258

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 1

Range 1: 4962 to 5198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 35/79(44%) 0/79(0%) Minus/Plus
Query      101  YDHCLIQRYSAGGSIGFHADDEPCYLPGGSVVTVNLYGDATFEVKENTSGRIEKVELRDGDVYVMGPGMQQTHKHRVTS  337
                +DHCL+Q+Y  GG + FHADDE CY     ++TVNL G A F  K    G++  + +  GD ++M  G Q+TH H V S
Subject   4962  FDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNS  5198

Nucleotide Sequence (439 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
439

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
281.1 1000.1 47% 4.053e-75 47% NC_003604
128.9 203.0 19% 2.577e-29 46% NC_003602
92.3 130.0 29% 8.196e-24 47% NC_018458
73.8 142.7 29% 1.444e-27 39% NC_016404

Alignments

Grapevine virus A, complete genome

Sequence ID: Length: 7351 Number of Matches: 8

Range 1: 3522 to 3959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
281.1 bits(616) 0.0 135/146(92%) 0/146(0%) Minus/Plus
Query        2  GIHVTPVLKKHLITNAKSTLLKKVLKGETYRRSEIVAMVRKHIPETTVLFEESRLAETVDYEARLAGDPYLKSLLALYXXXXXXXXXXXEPVALEPTRTHLALSTKINELAPFDLKAKEDREQYTEAGRTEQIDEEGYQGEAGNPM  439
                GIHVTP LKK LITNAKSTLLKKVLKGETYRRSEIVAMVRKHIPETTVLFEESRLAETVDYEARLAGDPYLKSLLALYDEIEMED+EIEEPV LEPT+THLALSTK+NELAPFDLKAKE REQ+TEAGRTEQIDE GYQGE G+PM
Subject   3522  GIHVTPALKKKLITNAKSTLLKKVLKGETYRRSEIVAMVRKHIPETTVLFEESRLAETVDYEARLAGDPYLKSLLALYDEIEMEDIEIEEPVTLEPTKTHLALSTKMNELAPFDLKAKEHREQHTEAGRTEQIDENGYQGEVGDPM  3959

Range 2: 3525 to 3959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 76/145(52%) 0/145(0%) Plus/Minus
Query        2  HGVTCFALIPLFIYLLCPPRLGVLLPVLFCLKIEGRQLINLGAQSQMSSCGFECHRLFYFHVLHLDFIIKSQKRFEIRITG*SCLVVHCLGQPTLFEQHSGLWYVLSNHCHYF*SPVRLPLEHFLQQCALCVGNQMLFQYRSHMY  436
                HGVT F+L+P+ +YL  PP L VLLPVLFC +++  +L++L AQ  M   G ECHRL Y +VLHL  +++ QK F++ +     LVVH LGQ    +QH GLWYVLS+HCHY  S V   LE+FLQQCA  +G+Q L Q R +MY
Subject   3525  HGVTHFSLVPILVYLFGPPCLCVLLPVLFCFEVKWCKLVHLCAQG*MGLGGLECHRLLYLYVLHLYLVVQGQKGFKVGVASQPSLVVHRLGQSAFLKQHCGLWYVLSDHCHYLRSSVGFALEYFLQQCAFSIGDQFLLQSRGYMY  3959

Range 3: 3526 to 3708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 37/61(61%) 0/61(0%) Minus/Plus
Query      253  YM*LLY*KSI*LPTQRAHC*RKCSRGRRTGDQK*WQWFESTYQRPLCCSKRVGWPRQWTTR  435
                YM* L *+  * P  +AHC*RK SR + T D++*WQW ESTYQRP CC ++  WPR+WTTR
Subject   3526  YM*PLL*RRN*SPMLKAHC*RKYSRAKPTEDRR*WQWSESTYQRPQCCLRKADWPRRWTTR  3708

Range 4: 3736 to 3960 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 35/75(47%) 0/75(0%) Minus/Plus
Query        1  NLFWLFMMKSRWRTWK*KSRWHSNPHELIWL*APRLMSWRPSILRQKRTGSNTPRRGGQSK*MKRGIKAKQVTP*  225
                N FW    + RWRT +*+SR HS+P   I  *A R  S      +QK TGSNT R+GG ++* + G + K VTP*
Subject   3736  NPFWPCTTR*RWRT*R*RSR*HSSPPRPI*P*AQR*TSLHHLTSKQKSTGSNTQRQGGPNR*TRMGTREKWVTP*  3960

Range 5: 3524 to 3652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 36/43(84%) 0/43(0%) Plus/Minus
Query      309  GMCFRTIATISDLLYVSPLSTFFSSVLFALVIRCFFSTGVTCI  437
                GMCFRTIATISDLL VSPLSTFFSSVL ALVI  FF  GVTC+
Subject   3524  GMCFRTIATISDLL*VSPLSTFFSSVLLALVISFFFRAGVTCM  3652

Range 6: 3809 to 3958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 37/50(74%) 0/50(0%) Plus/Minus
Query        3  MGLPASP*YPSSSICSVRPASVYCSLSSFALRSKGANSLILVLRAK*VRV  152
                MG P SP YP SSICSVRPASV CS  SFALRS GA+S I VLRAK V V
Subject   3809  MGSPTSPWYPFSSICSVRPASVCCSRCSFALRSNGASSFIFVLRAKWVLV  3958

Range 7: 3526 to 3960 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 69/145(48%) 0/145(0%) Plus/Minus
Query        1  SWGYLLRLDTPLHLFALSAPPRCIAPCPLLP*DRRAPTH*SWCSEPNEFVWVRVPPALLFPRPPSRFHHKEPEEI*DKDHRLVLPRSPLSRPAYSLRTAQWSLVCAFEPLPLFLISCTSPP*ALSSAVCSLRW*SDAFSVQESHV  435
                SWG+ L   T   L   SA P C+AP  LL * +      S CS  N   W RV PA L   PPS      PE I* +  +   PRSP SRP    +TA WSLVCAF PLPL  I C   P* LSSAVC   W*S + S Q  HV
Subject   3526  SWGHPLLPGTHSRLSVRSALPLCVAPGALLL*GQMVQARSSLCSGLNGSWWARVSPAPLSLCPPSLSRRTGPEGI*GRGRQPA*PRSPPSRPVCFPQTALWSLVCAFGPLPLSPIFCRFRP*VLSSAVCF*HW*SVSSSEQGLHV  3960

Range 8: 3527 to 3709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 36/61(59%) 0/61(0%) Minus/Plus
Query      252  TCDSCTEKASDYQRKEHTAEESAQGGDVQEIRNSGNGSKAHTRDHCAVRRE*AGRDSGLRG  434
                TC+ C+E+ +D+Q  +HTAEES QG ++Q+I +SGNG KAHTRDH AV  +  GRD GLRG
Subject   3527  TCNPCSEEETDHQC*KHTAEESTQGRNLQKIGDSGNGPKAHTRDHSAV*GKQTGRDGGLRG  3709

Grapevine virus B, complete genome

Sequence ID: Length: 7599 Number of Matches: 3

Range 1: 3490 to 3906 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(279) 0.0 70/139(50%) 0/139(0%) Minus/Plus
Query        2  LKKHLITNAKSTLLKKVLKGETYRRSEIVAMVRKHIPETTVLFEESRLAETVDYEARLAGDPYLKSLLALYXXXXXXXXXXXEPVALEPTRTHLALSTKINELAPFDLKAKEDREQYTEAGRTEQIDEEGYQGEAGNPM  418
                L  +L  +AKST+LKK+L GE      I++++RK +P+   L       ++ + E +L+GDPYLK LL L DE E E+VEI EP  LEP +THL L    NEL+  DL++KE RE  TEAGRT+QIDE GY+GE  NPM
Subject   3490  LVNNLKRSAKSTVLKKILGGERVTEGLILSLIRKKLPDVIWLRRRCCSGQSDEMEEKLSGDPYLKGLLCLIDETEEEEVEIPEPELLEPQKTHLPLCVGENELSISDLRSKESREVSTEAGRTDQIDELGYKGEPENPM  3906

Range 2: 3762 to 3905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 25/48(52%) 0/48(0%) Plus/Minus
Query        3  MGLPASP*YPSSSICSVRPASVYCSLSSFALRSKGANSLILVLRAK*V  146
                +G   SP  PSSSI SV PASV  SL SF L+S   NS     R +*V
Subject   3762  IGFSGSPL*PSSSI*SVLPASVLTSLLSFDLKSLMLNSFSPTQRGR*V  3905

Range 3: 3495 to 3599 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      309  GMCFRTIATISDLLYVSPLSTFFSSVLFALVIRCF  413
                G  F    +I+  + +SP S FFS+VLFAL+ R F
Subject   3495  GNFFLIKLSINPSVTLSPPSIFFSTVLFALLFRLF  3599

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 2

Range 1: 3583 to 3888 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(198) 0.0 48/102(47%) 0/102(0%) Minus/Plus
Query      101  LITNAKSTLLKKVLKGETYRRSEIVAMVRKHIPETTVLFEESRLAETVDYEARLAGDPYLKSLLALYXXXXXXXXXXXEPVALEPTRTHLALSTKINELAPF  406
                L   AKS +L+ +L+     R  I+  +RK +P    +F E+RLA T +YE +L GDPYLK +L L  E E+E+ E EEP+A EP +THL LS  +NE+APF
Subject   3583  LKARAKSEVLRSILRAGKVGRDTILNSLRKEMPNAEPVFTEARLANTEEYEEKLMGDPYLKGMLRLLQEEEIEEEECEEPMAPEPVKTHLFLSEGVNEMAPF  3888

Range 2: 3937 to 4014 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(77) 0.0 16/26(62%) 0/26(0%) Minus/Plus
Query        5  DREQYTEAGRTEQIDEEGYQGEAGNP  82
                +REQ T AG T QIDE GY G+  NP
Subject   3937  NREQKTTAGLTAQIDEMGYAGQNENP  4014

Actinidia virus B, complete genome

Sequence ID: Length: 7488 Number of Matches: 2

Range 1: 3773 to 3928 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.8 bits(157) 0.0 33/52(63%) 0/52(0%) Minus/Plus
Query        2  EPTRTHLALSTKINELAPFDLKAKEDREQYTEAGRTEQIDEEGYQGEAGNPM  157
                EP +THL +STK NELAP  L+A+E RE  T AG TEQIDE GY+ E  NPM
Subject   3773  EPQKTHLPISTKENELAPSLLRAREHREARTPAGTTEQIDEMGYKMEPENPM  3928

Range 2: 3494 to 3724 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(146) 0.0 30/77(39%) 0/77(0%) Minus/Plus
Query      206  IHVTPVLKKHLITNAKSTLLKKVLKGETYRRSEIVAMVRKHIPETTVLFEESRLAETVDYEARLAGDPYLKSLLALY  436
                + V   +K+HL  +AKS++LK  L+G+  +R  I+ M+     +  ++ +E+R A++ D E +L+GDPYLK LL LY
Subject   3494  VEVDKSMKEHLKVHAKSSILKMFLRGQMIKRELIMEMMGTDNGDVELIEKETRFADSDDMEDKLSGDPYLKGLLRLY  3724