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Queries

Nucleotide Sequence (287 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
29
58
87
116
145
174
203
232
261
287

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
217.3 965.4 37% 3.118e-56 79% NC_003605

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 9

Range 1: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.3 bits(468) 0.0 90/95(95%) 0/95(0%) Plus/Plus
Query        2  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  286
                VKRV+DKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGV FR+LTGQFKEMK+KETLA+EEELRKRIRTYNSTYYEIHGKHADAKQ
Subject   3548  VKRVKDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVRFRSLTGQFKEMKYKETLAREEELRKRIRTYNSTYYEIHGKHADAKQ  3832

Range 2: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.0 bits(404) 0.0 80/95(84%) 0/95(0%) Minus/Minus
Query        2  LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  286
                LFG+SVLSVDF+IS +VGAYALT FLL C RLF+LHLF+LASQ PE YA*RYQC*EE SNVQYVR* WYHVVH*FS*PF+ALHLHSDPLV NSLY
Subject   3548  LFGVSVLSVDFIISTVVGAYALT*FLLPC*RLFILHLFELASQTPESYA*RYQC*EEGSNVQYVR*LWYHVVH*FS*PFHALHLHSDPLVFNSLY  3832

Range 3: 3547 to 3720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 54/58(93%) 0/58(0%) Minus/Minus
Query        1  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  174
                LNWPVR RN TP+DISVRRRVPTF+MFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT
Subject   3547  LNWPVRLRNRTPNDISVRRRVPTFSMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  3720

Range 4: 3771 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 17/21(81%) 0/21(0%) Minus/Minus
Query      225  FVWHQRAFRGFRNKCYCRCVC  287
                FVW QRAFRGF NK  CRCVC
Subject   3771  FVWRQRAFRGFHNKYCCRCVC  3833

Range 5: 3547 to 3729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.6 bits(270) 0.0 53/61(87%) 0/61(0%) Plus/Plus
Query        1  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  183
                SKES*RQVGRSASARR+MVS*ISALHDTR NEH ERWN PPNTDI RR+IPE DWPV RDE
Subject   3547  SKES*RQVGRSASARREMVS*ISALHDTRANEHTERWNPPPNTDIVRRTIPESDWPVQRDE  3729

Range 6: 3759 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 20/25(80%) 0/25(0%) Plus/Plus
Query      213  NCVSAYAPTIALITKSTESTLMPNK  287
                N VSAYAPT  LI KSTESTL PNK
Subject   3759  NYVSAYAPTTVLIMKSTESTLTPNK  3833

Range 7: 3549 to 3722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 51/58(88%) 0/58(0%) Plus/Plus
Query        3  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLK  176
                *REL+TSGSECKCKA*NG*LNQCTT*YQ+*RTY*TLE SS*H*YR*A  SG *LAS K
Subject   3549  *RELKTSGSECKCKA*NG*LNQCTT*YQS*RTY*TLEPSS*H*YR*AYDSGV*LASSK  3722

Range 8: 3618 to 3716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 26/33(79%) 0/33(0%) Minus/Minus
Query       72  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  170
                TGQS SG++RL ISVLGG FQRS+CSL LVSCS
Subject   3618  TGQSDSGIVRLTISVLGGGFQRSVCSLALVSCS  3716

Range 9: 3796 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Minus
Query      250  CLASACFPWIS*  285
                CLASACFPWIS*
Subject   3796  CLASACFPWIS*  3831

Nucleotide Sequence (176 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
18
36
54
72
90
108
126
144
162
176

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
61.6 61.6 32% 7.545e-10 39% NC_014252
119.3 593.8 39% 3.147e-27 80% NC_003605
68.9 68.9 30% 4.685e-12 45% NC_027706
61.1 61.1 30% 1.037e-09 42% NC_020896
60.2 60.2 28% 1.957e-09 37% NC_010736

Alignments

Panax virus Y, complete genome

Sequence ID: Length: 9750 Number of Matches: 1

Range 1: 948 to 1115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 22/56(39%) 0/56(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHTQH  169
                ++RGR +G +++S SK+T S+T R++ YS     F+N ++T F++N PK   H  H
Subject    948  IIRGRHEGILLNSLSKLTESVTLRIIHYSSTGDKFFNSFATTFVNNVPKNLDHACH  1115

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 46/54(85%) 0/54(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT  163
                VVRGRV G++IDSQSKVTH++THRMVQYSDVARNFWNGYSTCFMHNTPK   HT
Subject   1331  VVRGRVYGKIIDSQSKVTHTLTHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT  1492

Range 2: 1331 to 1468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 42/46(91%) 0/46(0%) Minus/Minus
Query        2  VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  139
                VVHETS*VSVPEVSCDVAVLNH VR+GVCDLTLR+YNFTIYP PNN
Subject   1331  VVHETS*VSVPEVSCDVAVLNHAVREGVCDLTLRVYNFTIYPPPNN  1468

Range 3: 1332 to 1493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 43/54(80%) 0/54(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP  164
                LLG G MVKL* RKVRSHTPSRT WFNTATSHETSGTDTQLVSCTT  +  + P
Subject   1332  LLGGGYMVKL*TRKVRSHTPSRTAWFNTATSHETSGTDTQLVSCTTPQRTYSIP  1493

Range 4: 1330 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 40/47(85%) 0/47(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH  141
                RC*G G W*+YR AK*GHT  HAP+GSIQRRRTKLLERILNLFHAQH
Subject   1330  RC*GEGIW*NYRLAK*GHTHPHAPHGSIQRRRTKLLERILNLFHAQH  1470

Range 5: 1332 to 1469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 38/46(83%) 0/46(0%) Minus/Minus
Query        3  CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  140
                CCA*NKLSIRSRSFVRRRCIEP GA*  V*PYFA+L* +H+P P*Q
Subject   1332  CCA*NKLSIRSRSFVRRRCIEPCGA*GCV*PYFASL*FYHIPSP*Q  1469

Range 6: 1360 to 1473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 35/38(92%) 0/38(0%) Minus/Minus
Query       31  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  144
                GVLCMKQVEYPFQKFRATSLY*T+RCV  CVTLLCESI
Subject   1360  GVLCMKQVEYPFQKFRATSLY*TMRCVRVCVTLLCESI  1473

Lettuce italian necrotic virus, complete genome

Sequence ID: Length: 9829 Number of Matches: 1

Range 1: 1230 to 1388 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 24/53(45%) 0/53(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKH  160
                +VRGR++G ++D++SK+THS+   +  YS VA+ FW G++  F+HN PK   H
Subject   1230  IVRGRINGMLVDARSKLTHSLVCVLHHYSSVAQQFWEGFTGTFVHNKPKDLTH  1388

Sweet potato latent virus, complete genome

Sequence ID: Length: 10081 Number of Matches: 1

Range 1: 1386 to 1544 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 22/53(42%) 0/53(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKH  160
                +VRGR +G++ D++ +VT S+  RM  Y DVA+ FW G+   F+ N P+   H
Subject   1386  IVRGRHEGKLYDARQRVTESVMLRMQHYMDVAQKFWKGFDKMFLPNRPEERSH  1544

Algerian watermelon mosaic virus, complete genome

Sequence ID: Length: 9842 Number of Matches: 1

Range 1: 1250 to 1396 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 18/49(37%) 0/49(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK  148
                +VRGR +G++ D+++K+T+++ H+++ YS V   FW GY+  ++ N  K
Subject   1250  IVRGRHEGKIYDARTKITYTMMHKIIHYSSVPERFWKGYNASYLANRGK  1396

Nucleotide Sequence (399 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
40
80
120
160
200
240
280
320
360
399

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
186.2 938.9 20% 1.281e-46 78% NC_003605
133.9 221.2 20% 6.792e-31 59% NC_027706
135.8 311.7 17% 1.907e-31 41% NC_002600
137.6 213.8 19% 5.352e-32 57% NC_008028
133.0 255.2 18% 1.297e-30 36% NC_004047

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 2474 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.2 bits(400) 0.0 75/77(97%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTG+H
Subject   2474  VDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGYH  2704

Range 2: 2467 to 2712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 64/82(78%) 0/82(0%) Minus/Plus
Query       88  FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSK  333
                +  RRPRG  *RFHE+GTRDSSETARGVALNDGC +GL*Y  YISSRHPKIG+T NLSRS NENI C *LIWFNHDWI +S+
Subject   2467  YARRRPRGSG*RFHENGTRDSSETARGVALNDGCSNGL*YTGYISSRHPKIGITPNLSRSCNENISCY*LIWFNHDWISYSE  2712

Range 3: 2477 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 65/76(86%) 0/76(0%) Plus/Minus
Query       96  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV  323
                M SSRD*TI*VN M+CFRC+ID*DS * RSSGVWMKCS YITSR +IHH*GPLPELFHCYLACH REIFSL+LWDV
Subject   2477  MISSRD*TI*VNNMKCFRCMID*DSG*FRSSGVWMKCSQYITSRCYIHH*GPLPELFHCYLACHFREIFSLILWDV  2704

Range 4: 2476 to 2697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.2 bits(328) 0.0 71/74(96%) 0/74(0%) Plus/Minus
Query      103  PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS  324
                PVVIEPYESIT NVFVA*STKIRGNSDLRVSG*NVA+ILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS
Subject   2476  PVVIEPYESIT*NVFVA*STKIRGNSDLRVSG*NVASILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS  2697

Range 5: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.9 bits(312) 0.0 65/77(84%) 0/77(0%) Minus/Plus
Query       92  TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  322
                TSQR +LKISR+WHAR*Q*NSSGSGPQ*WM +RLVIY LHFIQTPEDR+Y ES*SI QRKH M LTHMVQSRLD IF
Subject   2478  TSQRIRLKISRKWHAR*Q*NSSGSGPQ*WM*QRLVIYWLHFIQTPEDRNYPES*SIMQRKHFMLLTHMVQSRLDIIF  2708

Range 6: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.2 bits(291) 0.0 63/77(82%) 0/77(0%) Plus/Minus
Query       92  ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR  322
                E  IQS*LNHMSQ H MFSL DRLRF V PIFGCLDEM* +YYKP  HPSLRATPRAVSLLSRVP S*NL*  PLGR
Subject   2478  EYDIQS*LNHMSQ*HEMFSLHDRLRFGVIPIFGCLDEM*PVYYKPLLHPSLRATPRAVSLLSRVPFS*NL*PDPLGR  2708

Lettuce italian necrotic virus, complete genome

Sequence ID: Length: 9829 Number of Matches: 2

Range 1: 2358 to 2603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 48/82(59%) 0/82(0%) Minus/Plus
Query       96  WVCLGLDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  341
                ++ + +DV E+ AK+FTK AR++A+++LG+WP++ DVA +C +LA+F PDT +SELPR+LVDH T+T HVIDSYGS+TTG+H
Subject   2358  YMAMLIDVSEEAAKEFTKKARDLAIQELGQWPTLTDVAASCYLLASFFPDTAKSELPRMLVDHETQTIHVIDSYGSLTTGYH  2603

Range 2: 2375 to 2596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 46/74(62%) 0/74(0%) Plus/Minus
Query      103  PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS  324
                PVV EPYESITW V V+*ST IRGNSD  VSG   A   Q  ATS+  GH PS   A SRA FV S A SS TS
Subject   2375  PVVNEPYESITWIVCVS*STSIRGNSDFAVSGKKDARR*QLAATSVSVGHCPSS*IAKSRAFFVNSFAASSLTS  2596

Peanut mottle virus, complete genome

Sequence ID: Length: 9709 Number of Matches: 4

Range 1: 2145 to 2375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 53/77(69%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                ++V ED AKDFTKM R+  V  LG WPSMMDVATAC IL  FHP+T+ +ELPRILVDH  KT HVIDS+GSI+TG+H
Subject   2145  VNVNEDSAKDFTKMIRDTIVPMLGTWPSMMDVATACYILTVFHPETKSAELPRILVDHTNKTMHVIDSFGSISTGYH  2375

Range 2: 2150 to 2368 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 44/73(60%) 0/73(0%) Plus/Minus
Query      103  PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGT  321
                PV IEP ESIT  V   *ST+I G+S L VSG    ++ QAVATSII GH P+  T +SR IFVKSLA SS T
Subject   2150  PVEIEPNESITCMVLFV*STRILGSSALFVSGWKTVSM*QAVATSIILGHVPNIGTIVSRIIFVKSLALSSFT  2368

Range 3: 2160 to 2393 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 32/78(41%) 0/78(0%) Plus/Minus
Query       78  CLVAWKMESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLV  311
                C     M S RD*T *++ M    C+I  DS *L +  + M+  *Y+TS  HIHH  P  +  H  +A HL EI   V
Subject   2160  CSSLENMISCRD*TK*IDNMHGLVCMIHKDSG*LCAFCLRMENC*YVTSCCHIHHTWPCSQHRHDCIAYHLCEILGTV  2393

Range 4: 2221 to 2379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 24/53(45%) 0/53(0%) Minus/Plus
Query       92  GPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  250
                G  *WMW++LV Y*   I   + +SY ES  I Q +  M   H+VQS  D IF
Subject   2221  GQV*WMWQQLVTY*QFSILRQKAQSYPESLWIIQTRPCMLSIHLVQSLQDIIF  2379

Daphne mosaic virus, complete genome

Sequence ID: Length: 9548 Number of Matches: 2

Range 1: 2123 to 2353 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 51/77(66%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                ++V E+ AKDFTKM R++  ++LG+WPSM+DVATAC +L  FHPDT+ +ELPRILVDH TKT HVIDSYGS+ TG+H
Subject   2123  INVSENDAKDFTKMVRDVIAERLGKWPSMLDVATACFLLTVFHPDTKNAELPRILVDHKTKTMHVIDSYGSMHTGYH  2353

Range 2: 2143 to 2346 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 39/68(57%) 0/68(0%) Plus/Minus
Query      103  PVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA  306
                PV I+PYES+T  VFV *ST I G+S   VSG N  N  QAVATS + GH PS     SR I VKS A
Subject   2143  PVCIDPYESMTCMVFVL*STNILGSSAFLVSGWNTVNRKQAVATSSMLGHFPSLSAITSRTILVKSFA  2346

Bean common mosaic necrosis virus, complete genome

Sequence ID: Length: 9612 Number of Matches: 3

Range 1: 2177 to 2407 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 50/77(65%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                ++V ED+AKDFTKM R++ V +LG WPSMMDVATA  I+  FHP+TR +ELPRILVDHA++T HVIDS+GS++ G+H
Subject   2177  VNVNEDEAKDFTKMVRDVVVPKLGTWPSMMDVATAVYIMTVFHPETRSAELPRILVDHASQTMHVIDSFGSLSVGYH  2407

Range 2: 2182 to 2406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 44/75(59%) 0/75(0%) Plus/Minus
Query       97  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGT  321
                W P   EP ESIT  V +A*ST IRGNS L VSG     +  AVATSI+ GH PS  T  SR IFVKS A SS T
Subject   2182  WYPTDNEPNESITCIV*LA*STSIRGNSALLVSGWKTVIM*TAVATSIMLGHVPSFGTTTSRTIFVKSFASSSLT  2406

Range 3: 2206 to 2424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 26/73(36%) 0/73(0%) Minus/Plus
Query       79  FHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPN  297
                F++DG R        +A +DGC  G  +     S   +  VT++ SRS   N  C+*LIW    WIP  K  N
Subject   2206  FYKDGARCGRAKTWNMAEHDGCCYGSLHNDSFPS*DKECRVTTDTSRSC*SNNACD*LIWLVICWIPCVKGGN  2424

Nucleotide Sequence (200 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
200

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
159.1 810.1 34% 4.612e-39 83% NC_003605
103.2 151.5 52% 3.104e-22 55% NC_027706
81.3 81.3 33% 1.297e-15 44% NC_014898
83.1 83.1 32% 3.639e-16 48% NC_005288
80.3 80.3 32% 2.447e-15 43% NC_020896

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 60/66(91%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                VVRGRV G++IDSQSKVTH++THRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVK+CGT
Subject   1331  VVRGRVYGKIIDSQSKVTHTLTHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKDCGT  1528

Range 2: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 59/66(89%) 0/66(0%) Minus/Minus
Query        2  SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  199
                SA  FNIKI*CAGMEYVLWGVVHETS*VSVPEV CDVAVLNH VR+GVCDLTLR+YNFTIYP PNN
Subject   1331  SAAIFNIKI*CAGMEYVLWGVVHETS*VSVPEVSCDVAVLNHAVREGVCDLTLRVYNFTIYPPPNN  1528

Range 3: 1330 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 56/66(85%) 0/66(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH  198
                RC*G G W*+YR AK*GHT  HAP+GSIQRRRT+LLERILNLFHAQHPKGHTPYLHIRF*C*R+ H
Subject   1330  RC*GEGIW*NYRLAK*GHTHPHAPHGSIQRRRTKLLERILNLFHAQHPKGHTPYLHIRF*C*RLRH  1527

Range 4: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 59/66(89%) 0/66(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL  200
                LLG G MVKL* RKVRSHTPSRT WFNTATSH TSGTDTQLVSCTTPQRTYSIPAHQILMLK  AL
Subject   1332  LLGGGYMVKL*TRKVRSHTPSRTAWFNTATSHETSGTDTQLVSCTTPQRTYSIPAHQILMLKIAAL  1529

Range 5: 1360 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 52/56(93%) 0/56(0%) Minus/Minus
Query       31  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  198
                VP SLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*T+RCV  CVTLLCESI
Subject   1360  VPQSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TMRCVRVCVTLLCESI  1527

Range 6: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 55/66(83%) 0/66(0%) Minus/Minus
Query        3  QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  200
                QC  L*HQNLMCRYGVCPLGCCA*NKLSIRSRS VRRRCIEP GA*  V*PYFA+L* +H+P P*Q
Subject   1332  QCRNL*HQNLMCRYGVCPLGCCA*NKLSIRSRSFVRRRCIEPCGA*GCV*PYFASL*FYHIPSP*Q  1529

Lettuce italian necrotic virus, complete genome

Sequence ID: Length: 9829 Number of Matches: 2

Range 1: 1230 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 36/66(55%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                +VRGR++G ++D++SK+THS+   +  YS VA+ FW G++  F+HN PKD+ H CTSDF VKECGT
Subject   1230  IVRGRINGMLVDARSKLTHSLVCVLHHYSSVAQQFWEGFTGTFVHNKPKDLTHECTSDFSVKECGT  1427

Range 2: 1313 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 22/38(58%) 0/38(0%) Minus/Minus
Query       85  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSL  198
                VPHSLT KSDV  W  SFG+LC K    P Q   AT L
Subject   1313  VPHSLTEKSDVHSWVKSFGLLCTKVPVKPSQNCCATLL  1426

Lupine mosaic virus, complete genome

Sequence ID: Length: 10113 Number of Matches: 1

Range 1: 1433 to 1630 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 29/66(44%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                +VRG    ++IDS+ +VT  +  +M+ YSD    FW G++  F+ N P DI H CTSDF+V++CG+
Subject   1433  IVRGSNYNQIIDSRVRVTKFVKDKMIHYSDPGTVFWRGFNRTFLQNKPTDINHQCTSDFNVEQCGS  1630

Lily mottle virus, complete genome

Sequence ID: Length: 9644 Number of Matches: 1

Range 1: 999 to 1193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 31/65(48%) 0/65(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECG  196
                VVRG  +G++ +++ KVT ++THRM+ YS     FW G+++ F+   PK+I HTCTS+F+V ECG
Subject    999  VVRGNHEGKLYEARRKVTLTMTHRMIHYSGPGDKFWAGFNSQFLRIKPKEIPHTCTSNFNVFECG  1193

Sweet potato latent virus, complete genome

Sequence ID: Length: 10081 Number of Matches: 1

Range 1: 1386 to 1580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 28/65(43%) 0/65(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECG  196
                +VRGR +G++ D++ +VT S+  RM  Y DVA+ FW G+   F+ N P++  H C +D DV  CG
Subject   1386  IVRGRHEGKLYDARQRVTESVMLRMQHYMDVAQKFWKGFDKMFLPNRPEERSHVCVADLDVNRCG  1580

Nucleotide Sequence (199 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
94.8 94.8 33% 1.109e-19 53% NC_030847
156.5 701.3 35% 2.843e-38 78% NC_003605
95.2 95.2 33% 8.081e-20 58% NC_010736
92.9 92.9 33% 3.938e-19 57% NC_014898
92.0 92.0 33% 7.42e-19 55% NC_029051

Alignments

Brazilian weed virus Y isolate KLL097, complete genome

Sequence ID: Length: 9837 Number of Matches: 1

Range 1: 3657 to 3854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.8 bits(201) 0.0 35/66(53%) 0/66(0%) Minus/Plus
Query        1  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWI  198
                RSDCV+R+L+KLKS+V + ++DVRHQS+D+IID+FD+KK TIDF ++          D++F  WWI
Subject   3657  RSDCVFRTLNKLKSVVGSLDNDVRHQSLDDIIDIFDDKKHTIDFTLDDDVFNPEVSTDTSFDSWWI  3854

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 7

Range 1: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.5 bits(336) 0.0 64/65(98%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSDCVYRSLSKLKSLVSTC+DDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4001  RSDCVYRSLSKLKSLVSTCDDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4004 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 52/64(81%) 0/64(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAIT  195
                PPL ECR++HARRVKFFSFNLEIY  FLLI+ VND INAL+AYII+ARRY**F+L**TPVH IT
Subject   4004  PPLAECRVYHARRVKFFSFNLEIYRLFLLIEQVNDFINALVAYIIIARRY**FKL**TPVHTIT  4195

Range 3: 4005 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 52/64(81%) 0/64(0%) Minus/Plus
Query        3  VIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  194
                VI CTGVYQS NH*YLRA MMYA RALM+SLT  MRRK+ *ISRLKEKNFTLLAW  RHS SGG
Subject   4005  VIVCTGVYQSLNH*YLRAMMMYATRALMKSLTCSMRRKRR*ISRLKEKNFTLLAW*TRHSASGG  4196

Range 4: 4005 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 51/63(81%) 0/63(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH  194
                TT *MS+ PREKSKVLFLQSRNL  LSSH+ GQ* HQRS GVHH RT*ILMI*ALI+SCT NH
Subject   4005  TTC*MSSLPREKSKVLFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT*ILMI*ALIDSCTHNH  4193

Range 5: 4000 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 51/65(78%) 0/65(0%) Minus/Plus
Query        5  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  199
                E+*L VQE IKA IISIYVR *CTP ER**+H*P+ *EER+ RFRD*RKRTLLFSRG  DIQ VV
Subject   4000  EE*LCVQESIKA*IISIYVR**CTPPER**NH*PVR*EERDDRFRD*RKRTLLFSRGRLDIQQVV  4194

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Plus/Minus
Query      116  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  199
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  4083

Range 7: 4156 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        5  HHLLNVESTTREE  43
                HHLLNVESTTREE
Subject   4156  HHLLNVESTTREE  4194

Algerian watermelon mosaic virus, complete genome

Sequence ID: Length: 9842 Number of Matches: 1

Range 1: 3809 to 4003 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.2 bits(202) 0.0 38/65(58%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                +SDCVY+ L+K KS+V T E DV HQS+D+I DLF++K+ TIDFEI+ +E  SS   D TFS+WW
Subject   3809  KSDCVYKLLNKFKSVVGTIEQDVYHQSLDDINDLFEDKQLTIDFEIDVQEGNSSTTFDHTFSRWW  4003

Lupine mosaic virus, complete genome

Sequence ID: Length: 10113 Number of Matches: 1

Range 1: 4049 to 4243 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.9 bits(197) 0.0 37/65(57%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSD +Y++L+KLKSLV T +DDV HQS+D+I  L D+KK TIDFEI+GK+ +     + +FSKWW
Subject   4049  RSDYLYKTLNKLKSLVRTVDDDVYHQSLDDIESLDDDKKLTIDFEIDGKQAHGCTYKEMSFSKWW  4243

Jasmine ringspot virus, complete genome

Sequence ID: Length: 9590 Number of Matches: 1

Range 1: 3527 to 3721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.0 bits(195) 0.0 36/65(55%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSDCVY+ L KLK+L+ TCE DV  QS+DEI    +EK  T+DFE++G E   S V +STF +WW
Subject   3527  RSDCVYKILMKLKNLIGTCEQDVHFQSLDEIQTHLEEKNLTVDFEMDGVETAESLVTESTFQQWW  3721

Nucleotide Sequence (381 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
381

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
325.5 1661.9 25% 1.39e-88 98% NC_003605
214.6 576.3 30% 3.379e-55 36% NC_025254
203.1 428.9 32% 9.369e-52 38% NC_030391
203.1 482.5 46% 9.489e-52 31% NC_001445
207.7 493.2 39% 3.962e-53 33% NC_007913

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
325.5 bits(704) 0.0 125/126(99%) 0/126(0%) Minus/Minus
Query        2  VGFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  379
                V FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD
Subject   5063  VRFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  5440

Range 2: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
302.1 bits(653) 0.0 124/125(99%) 0/125(0%) Plus/Plus
Query        1  HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI  375
                HP***APNDPV KEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI
Subject   5062  HP***APNDPVYKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI  5436

Range 3: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
294.8 bits(637) 0.0 124/125(99%) 0/125(0%) Minus/Minus
Query        1  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM  375
                DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFF YRIIRCSLSRM
Subject   5062  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFVYRIIRCSLSRM  5436

Range 4: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN  379
                ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+
Subject   5063  ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD  5440

Range 5: 5064 to 5441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        3  SLIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSXXXXXXXXXXXXXXAS*DSSS*KNPT  380
                SLIVSTE*SG+QRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KN T
Subject   5064  SLIVSTE*SGIQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KNRT  5441

Range 6: 5064 to 5345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 93/94(99%) 0/94(0%) Minus/Minus
Query        3  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQG  284
                TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSL+TGSFGAHYQG
Subject   5064  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLYTGSFGAHYQG  5345

Carrot thin leaf virus isolate CTLV-Cs, complete genome

Sequence ID: Length: 9491 Number of Matches: 5

Range 1: 4608 to 4982 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.6 bits(462) 0.0 84/125(67%) 0/125(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES  376
                ILD ++R +RY K  +++GERIQR+GRVGRNK G+A+RIG+TE G  EIPA IATEAAFLCF+YGLPVMT+NVSTS+L NCTVRQAR MQ+FEL PF+M++LV +DG++HPAI+ +L++FKL++S
Subject   4608  ILDVDNRCVRYNKTCVSFGERIQRLGRVGRNKPGTALRIGATEKGLVEIPAKIATEAAFLCFSYGLPVMTNNVSTSLLANCTVRQARIMQQFELDPFYMINLVRYDGSMHPAIHDILKKFKLRDS  4982

Range 2: 4607 to 4981 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 67/125(54%) 0/125(0%) Minus/Minus
Query        1  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM  375
                +S +LN LR   IAGC  PS+ T+  + KG SSN CI+RACLTVQ  S LV TL V+TG+P +KHKKAASVAI AGIS+ P SV PI  A P L  PT P+L I SP +     Y     S S++
Subject   4607  ESLSLNFLRMS*IAGCIDPSYRTKLIM*KGSSSNCCIIRACLTVQFASKLVETLFVITGNP*LKHKKAASVAIFAGISTSPFSVAPILSAVPGLFLPTRPSLCILSPKLTHVLLYLTHLLSTSKI  4981

Range 3: 4614 to 4973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 46/120(38%) 0/120(0%) Minus/Minus
Query        8  QLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTI  367
                + EL +  +NCW++  +V   +DH E    KLLH  CL  C V E  C  + CH R  + + QEGCFCC+ CWY  +  FS   P   T FV+ N S  L  LT  +T   +P  S++ +
Subject   4614  EFELFENVMNCWMHRPIVPN*IDHVEGI*FKLLHYSCLPNCAVRE*TC*DIICHYR*PIAKAQEGCFCCNFCWYLDQSFFSCPNPQCCTRFVSTNSS*PLYPLTKANTCFIVPYTSIINV  4973

Range 4: 4658 to 4975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 38/106(36%) 0/106(0%) Plus/Plus
Query       52  IW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVE  369
                +W* + K+   W +Q+W+S  D  +*   GR+TS N NRSSLLV  +  +C+DK    K TR+L+S   T++A +*    L+ +  + R     SN    + VQ +
Subject   4658  LW*EDTKARTSW*KQTWYSTEDWGN*KRTGRDTSKNCNRSSLLVL*LWVTCNDK*CLNKFTRELHS*ASTNNAAI*TRSLLHDQFSSVRWVYASSNS*HSQKVQTQ  4975

Range 5: 4636 to 4887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 32/84(38%) 0/84(0%) Plus/Plus
Query       30  GMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLS  281
                G  + V  +V   K  + L  T LVQ  G   LK    +YQ + QQKQPSC     +L *Q    Q YS T Q  +H  C +L+
Subject   4636  GTIKHVLALVRGYKG*DELVETNLVQH*GLGQLKKDWSRYQQKLQQKQPSCALAMGYL**QIMSQQVYSRTAQLGKHE*CSNLN  4887

Wild onion symptomless virus gene for polyprotein, complete cds, isolate: TUR256-1

Sequence ID: Length: 9369 Number of Matches: 3

Range 1: 4372 to 4743 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 80/124(65%) 0/124(0%) Plus/Plus
Query        5  LDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES  376
                LDS++RM+ Y K ++++GERIQR+GRVGR+KAG AIRIG TE G  E+P+SIATEAAF+CFTYGLPV+ +NV+TS+L + TV+QARTM +FEL+PF+MV+LV  DG+VHPAI++ L++FKL++S
Subject   4372  LDSDNRMMNYRKIAVSFGERIQRLGRVGRHKAGCAIRIGHTEKGLSEVPSSIATEAAFMCFTYGLPVIANNVTTSLLAHATVKQARTMAQFELTPFYMVNLVRFDGSVHPAIHNALKKFKLRDS  4743

Range 2: 4374 to 4748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 70/125(56%) 0/125(0%) Minus/Minus
Query        7  SLDSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLS  381
                S +S NLN    L IAGCT PS  T+ T+  G SSN  +VRACLTV   S LV+TL  MTGSP VKH  AASVAI  G S  P SV P+R+A PAL  PTLP+  IRSP +   F   II  SLS
Subject   4374  SSESLNLNFFSAL*IAGCTDPSNLTKLTM*NGVSSNCAMVRACLTVACASKLVVTLFAMTGSP*VKHINAASVAILLGTSLSPFSVCPMRIAHPALCLPTLPSRCIRSPKLTAIFR*FIILLSLS  4748

Range 3: 4375 to 4734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 46/120(38%) 0/120(0%) Minus/Minus
Query        8  QLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTI  367
                QLEL Q  +NCWV+ ++  + VDH ER +LKL H  CL    V E AC +V  +D  S+ ET +  FCC   W F    F  SY +     V+ N + SL SL+  +++L I  H ++ +
Subject   4375  QLELFQRIMNCWVHRSIKSH*VDHVERCKLKLRHGACLLNRCVREQACGYVIRYDW*SISETHKCRFCCYTTWDFT*SFFRVSYADRAPCLVSANSAESLYSLSKTNSYLPIIHHPIIAV  4734

Plum pox virus, complete genome

Sequence ID: Length: 9741 Number of Matches: 6

Range 1: 4635 to 5009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 83/125(66%) 0/125(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES  376
                +LD ++R++RY KKSI+YGERIQR+GRVGRNK G+A+RIG TE G  +IP  IATEAAFLCFTYGLPVMT+ VSTS+L  CTV+QARTMQ+FELSPF+ V LV  DGT+H  I  LL+ ++L++S
Subject   4635  VLDIDNRLVRYTKKSISYGERIQRLGRVGRNKPGAALRIGFTEKGLTQIPPIIATEAAFLCFTYGLPVMTNGVSTSLLAMCTVKQARTMQQFELSPFYTVALVRFDGTMHQEIFRLLKSYRLRDS  5009

Range 2: 4640 to 5008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 69/123(56%) 0/123(0%) Minus/Minus
Query        7  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLS  375
                +S +L  L    I+ C VPS  T +T+  GD+SN CIVRACLTV + S LV T LV+TG P VKH+KAASVAI  GI   P SV PIR A P L RPT P L I SP ++LFF YR  R S+S
Subject   4640  ESRSL*LLSNRKISWCIVPSNRTNATV*NGDNSNCCIVRACLTVHIASKLVDTPLVITGKP*VKHRKAASVAIIGGI*VSPFSVNPIRSAAPGLFRPTRPNL*ILSP*LMLFFVYRTRRLSMS  5008

Range 3: 4778 to 4972 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 25/65(38%) 0/65(0%) Plus/Plus
Query      145  NTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN  339
                NTS NRNRSS  +FH+  + +D +   + T  ++ +  TDDA V* +P L+   G+  R + P N
Subject   4778  NTSNNRNRSSFSMFHLWFASYD*RCVNELTSDVHCQASTDDATV*IIPVLHSGVGSI*RDNAPGN  4972

Range 4: 4670 to 4747 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 8/26(31%) 0/26(0%) Plus/Plus
Query       37  KEKYHIW*ANPKSGKGWAQQSWFSHS  114
                +E++ +W  + K G  W++Q+  S S
Subject   4670  EEEHQLWRKDSKIGASWSKQTRSSTS  4747

Range 5: 4887 to 4985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 16/33(48%) 0/33(0%) Minus/Minus
Query      254  QEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCL  352
                +++ N  V+C V   Q    ERG  KLLHRPCL
Subject   4887  EQSKNFLVHCPVKSNQRHCVERG*FKLLHRPCL  4985

Range 6: 4791 to 4853 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 9/21(43%) 0/21(0%) Minus/Minus
Query      158  HVACHDRKSVCETQEGCFCCD  220
                H   H+ +++ ET + CFCCD
Subject   4791  HTVSHNWQTISET*KSCFCCD  4853

Konjac mosaic virus, complete genome

Sequence ID: Length: 9544 Number of Matches: 4

Range 1: 4662 to 5033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
207.7 bits(447) 0.0 83/124(67%) 0/124(0%) Plus/Plus
Query        5  LDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES  376
                LD ++R + Y KKS+++GERIQR+GRVGR K G A+RIG+TE G  EIP+ IATEAAF+CFTYGLPVMTS V+TS+LGNCTVRQARTMQ FELSPF+ V+LV +DGT+HP+I+ +L  +KL++S
Subject   4662  LDCDNRCMVYTKKSVSFGERIQRLGRVGRQKPGMALRIGTTEKGLMEIPSVIATEAAFMCFTYGLPVMTSGVTTSLLGNCTVRQARTMQNFELSPFYTVNLVRYDGTMHPSIHKILLAYKLRDS  5033

Range 2: 4688 to 5032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 72/115(63%) 0/115(0%) Minus/Minus
Query       31  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAY  375
                +S +L   R L + GC VPS+ T+ T+  GDSS FCIVRACLTVQLPS LV+T LV+TG+PYVKH  AASVAI  GIS  P SV+PIR A P   RPTLP+LWIRSP + LF  Y
Subject   4688  ESLSL*AKRILCMLGCIVPSYRTKFTV*NGDSSKFCIVRACLTVQLPSKLVVTPLVITGNPYVKHMNAASVAITDGISINPFSVVPIRSAIPGFCRPTLPSLWIRSPKLTLFLVY  5032

Range 3: 4662 to 4934 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 30/91(33%) 0/91(0%) Minus/Minus
Query        5  KLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIK  277
                K+LH  CL +CT+A+  C H  CH+ + +C+  E C CCD  W F       S     + F++ N    LDSL   +T   +   S++ +K
Subject   4662  KILHCACLPHCTIAK*TCCHTTCHNWQPICKAHERCLCCDHRWNFH*SFLCCSNSERHSWFLSTNSPKPLDSLPKTNTLFSVHHASIVAVK  4934

Range 4: 4802 to 4969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 22/56(39%) 0/56(0%) Plus/Plus
Query      145  NTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGT  312
                N+  +RNR S+ V +I  + +DK  + K T QLYS+  T +AK * +  L+ + GT
Subject   4802  NSICDRNRGSVHVLYIWVASYDKWCDNKFTWQLYSEASTHNAKF*TITILHSKFGT  4969

Nucleotide Sequence (275 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
28
56
84
112
140
168
196
224
252
275

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
157.3 851.8 25% 3.36e-38 84% NC_003605
69.3 69.3 25% 1.023e-11 44% NC_004426
69.3 69.3 25% 1.023e-11 43% NC_020896
72.1 72.1 21% 1.521e-12 44% NC_014536
78.0 78.0 21% 2.449e-14 53% NC_021065

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 63/70(90%) 0/70(0%) Plus/Minus
Query        3  CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA  212
                CDVAVLNH VR+GVCDLTLR+YNFTIYP PNNEYTVSP*TKFSYDF*RVQYV+A SWG*F*VCPC VPTA
Subject   1217  CDVAVLNHAVREGVCDLTLRVYNFTIYPPPNNEYTVSP*TKFSYDF*RVQYVSARSWG*F*VCPCFVPTA  1426

Range 2: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 62/70(89%) 0/70(0%) Minus/Plus
Query        3  GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  212
                G WH+TWTDSELSPGSSGYVLNSSKIIG+FGLRRHSIFVVRGRV G++IDSQSKVTH++THRMVQYSDVA
Subject   1217  GGWHKTWTDSELSPGSSGYVLNSSKIIGEFGLRRHSIFVVRGRVYGKIIDSQSKVTHTLTHRMVQYSDVA  1426

Range 3: 1218 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 63/70(90%) 0/70(0%) Minus/Plus
Query        2  AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH  211
                AVGT+HGQTQNYPQD A TY*TRQKS*ENLV*GDTVYSLLG G MVKL* RKVRSHTPSRT WFNTATSH
Subject   1218  AVGTKHGQTQNYPQDLADTY*TRQKS*ENLV*GDTVYSLLGGGYMVKL*TRKVRSHTPSRTAWFNTATSH  1427

Range 4: 1222 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 59/69(86%) 0/69(0%) Minus/Plus
Query        1  LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT  207
                LAQNMDRLRTIPRI R+RIELVKNHR+IWFKATQYIRC*G G W*+YR AK*GHT  HAP+GSIQRRRT
Subject   1222  LAQNMDRLRTIPRI*RIRIELVKNHRRIWFKATQYIRC*GEGIW*NYRLAK*GHTHPHAPHGSIQRRRT  1428

Range 5: 1216 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.4 bits(276) 0.0 62/71(87%) 0/71(0%) Plus/Minus
Query        1  RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP  213
                RATSLY*T+RCV  CVTLLCESI  P TLPLTTNILCRLKPN PMIFDEFNT PLDPGDSSESVHVLCQ P
Subject   1216  RATSLY*TMRCVRVCVTLLCESIILPYTLPLTTNILCRLKPNSPMIFDEFNTYPLDPGDSSESVHVLCQPP  1428

Range 6: 1221 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.6 bits(270) 0.0 58/69(84%) 0/69(0%) Plus/Minus
Query        2  VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN  208
                VRRRCIEP GA*  V*PYFA+L* +H+P P*QRIYCVALNQI L*FLTSSIR R ILGIVLSLSMFCAN
Subject   1221  VRRRCIEPCGA*GCV*PYFASL*FYHIPSP*QRIYCVALNQILL*FLTSSIRIR*ILGIVLSLSMFCAN  1427

Wild potato mosaic virus, complete genome

Sequence ID: Length: 9878 Number of Matches: 1

Range 1: 850 to 1053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 30/68(44%) 0/68(0%) Minus/Plus
Query       12  VGCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYS  215
                V  W  T     L  G SG VLNSS   GKFG    ++F+VRG  +G++ D++SK+T +   RM+QYS
Subject    850  VHSWGNTVDSHMLQRGDSGVVLNSSVCRGKFGRNWDNLFIVRGEYEGKIFDARSKLTETTALRMIQYS  1053

Sweet potato latent virus, complete genome

Sequence ID: Length: 10081 Number of Matches: 1

Range 1: 1278 to 1481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 29/68(43%) 0/68(0%) Minus/Plus
Query        3  WHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  206
                + R++   + S GSSG V N  K IG  G  ++ IF+VRGR +G++ D++ +VT S+  RM  Y DVA
Subject   1278  FERSFNTGQFSYGSSGLVFNPRKAIGTIGRAKNDIFIVRGRHEGKLYDARQRVTESVMLRMQHYMDVA  1481

Brugmansia suaveolens mottle virus, complete genome

Sequence ID: Length: 9870 Number of Matches: 1

Range 1: 911 to 1087 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 26/59(44%) 0/59(0%) Minus/Plus
Query       12  DSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYS  188
                D  L  G+SG++ N     G+FG  ++ +F+VRGR+DG ++D+QSKV++ + HRM  YS
Subject    911  DKHLEQGTSGFIFNGELCCGQFGRCKNGMFIVRGRLDGMMVDAQSKVSYHVMHRMHHYS  1087

Sunflower mild mosaic virus isolate Entre Rios, complete genome

Sequence ID: Length: 9718 Number of Matches: 1

Range 1: 1076 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 30/57(53%) 0/57(0%) Minus/Plus
Query        9  LSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD  179
                L PGSSG VLN   + GK   +R  +F+VRGR DGE+++++SK +HS+ HRM  YSD
Subject   1076  LQPGSSGLVLNHKILRGKVSRQRDGMFIVRGRCDGELLEARSKFSHSVVHRMTHYSD  1246

Nucleotide Sequence (316 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
316

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
227.7 1201.7 34% 2.68e-59 81% NC_003605
97.3 97.3 27% 5.053e-20 46% NC_000947
97.3 97.3 27% 5.053e-20 46% NC_004752
102.8 148.3 30% 1.122e-21 40% NC_011541
98.2 98.2 26% 2.679e-20 49% NC_023628

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 5660 to 5962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.7 bits(491) 0.0 94/101(93%) 0/101(0%) Minus/Plus
Query       12  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK  314
                CKIAYTLSVSPFMIPATINKIDALMAEERQK+EYFQTVTANTCTISNFSISS+GDMIRSRYSTNHSRENLQKLQ VRDTIINFECQAGT DGG+FDMET++
Subject   5660  CKIAYTLSVSPFMIPATINKIDALMAEERQKLEYFQTVTANTCTISNFSISSLGDMIRSRYSTNHSRENLQKLQTVRDTIINFECQAGTSDGGTFDMETAQ  5962

Range 2: 5660 to 5953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.0 bits(465) 0.0 84/98(86%) 0/98(0%) Plus/Minus
Query       21  LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  314
                LHVEGTP+TSSSLAL+VDDCVSD L*FLQV SRMVC*VSRPDH+  TTNGEV*DC CV C CLEVF LLSFFGH G++LVDCCWDHEGTHRECVCYFA
Subject   5660  LHVEGTPITSSSLALKVDDCVSDRL*FLQVFSRMVC*VSRPDHIAKTTNGEV*DCACVGCYCLEVFQLLSFFGH*GVDLVDCCWDHEGTHRECVCYFA  5953

Range 3: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 92/99(93%) 0/99(0%) Plus/Minus
Query       19  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  315
                VSMSK PPS VPAWHSKLMIVSLT C+FCRFSLEWFVEYLDLI+SP LLMEKFEIVHVLAVTVWKYS FCRSSAIRASILLIVAGIMKGLTESVYAILH
Subject   5659  VSMSKVPPSLVPAWHSKLMIVSLTVCNFCRFSLEWFVEYLDLIISPRLLMEKFEIVHVLAVTVWKYSNFCRSSAIRASILLIVAGIMKGLTESVYAILH  5955

Range 4: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.8 bits(410) 0.0 80/99(81%) 0/99(0%) Minus/Plus
Query       19  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD  315
                VQNSIHTLCESLHDPSNNQQD  P+GRRTTK GILPNS+S HM+NLKLLH** W +DQVEILNKPF*R+PA+ T+ QRHNHQL VPGWN * G+LRHGD
Subject   5659  VQNSIHTLCESLHDPSNNQQDRRPNGRRTTKVGILPNSNSQHMHNLKLLH**SWRYDQVEILNKPF*RKPAEITNGQRHNHQL*VPGWN**WGYLRHGD  5955

Range 5: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 86/99(87%) 0/99(0%) Minus/Plus
Query       20  RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR  316
                RAK*HTHSL*VPS*SQQQSTR  P*WPKNDK WNTSKQ Q TH QSQTSPLVVL  *SGRDTQQTILE+TC+NYK+SETQSST SARLELV GVPSTWR
Subject   5658  RAK*HTHSL*VPS*SQQQSTRSTP*WPKNDKSWNTSKQ*QPTHAQSQTSPLVVLAI*SGRDTQQTILEKTCRNYKRSETQSSTLSARLELVMGVPSTWR  5954

Range 6: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.4 bits(370) 0.0 80/99(81%) 0/99(0%) Plus/Minus
Query       20  SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  316
                SPCRR P H FQPGT+S**LCL*  V+ AG L*NGLLSIST*S  Q Y*WRSLRL MC L LFGSIP+FVVLRP G +SC*LLLGS*RDSQRVCMLFCT
Subject   5658  SPCRRYPHH*FQPGTQS**LCL*PFVISAGFL*NGLLSIST*SYRQDY*WRSLRLCMCWLLLFGSIPTFVVLRPLGRRSC*LLLGS*RDSQRVCMLFCT  5954

Japanese yam mosaic virus, complete genome

Sequence ID: Length: 9760 Number of Matches: 1

Range 1: 5314 to 5565 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 39/84(46%) 0/84(0%) Minus/Plus
Query       63  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFE  314
                CK+AYTL      I  TI+ IDAL+ EERQK EYF+T+T N+ + SNFS+ SI + IR+R+S++H+ EN+  L+  +  +  F+
Subject   5314  CKVAYTLKTDVMSIQRTIHIIDALIVEERQKQEYFRTITTNSISSSNFSLQSIANAIRARFSSDHTVENISVLENAKAQLCEFK  5565

Yam mosaic virus, complete genome

Sequence ID: Length: 9608 Number of Matches: 1

Range 1: 5181 to 5432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 39/84(46%) 0/84(0%) Minus/Plus
Query       63  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFE  314
                CK+AYTL      IP T+  I+ALM  ER K E+F +   N C+ S FS+SSI   +R+RY+TNH+ ENL  LQ  +D+++ F+
Subject   5181  CKVAYTLQTDAHAIPRTVKIIEALMIAERTKKEHFDSQVGNVCSSSMFSLSSITHALRARYNTNHAVENLSILQTAKDSLLEFK  5432

Narcissus yellow stripe virus, complete genome

Sequence ID: Length: 9650 Number of Matches: 2

Range 1: 5255 to 5503 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 43/83(52%) 0/83(0%) Minus/Plus
Query       66  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINF  314
                CKIAYTL      I  T+  ID+L+AEER K EYF+TVT+NT + SNFS+ SI + IRSR++T+H+REN+  L+A +  +  F
Subject   5255  CKIAYTLQTDVTAIQRTVRIIDSLIAEERVKQEYFKTVTSNTVSSSNFSLQSIANAIRSRFATDHTRENIGVLEAAKAQLCEF  5503

Range 2: 5254 to 5487 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 31/78(40%) 0/78(0%) Plus/Minus
Query       82  SLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  315
                +  A S   FS  W V   + I   +L  EKF+   V  VTV KYS F RSSA+  SI+  V  +      +V AILH
Subject   5254  AFAASSTPMFSRVWSVANRERIAFAML*SEKFDDETVFDVTVLKYSCFTRSSAMSESIIRTVR*MAVTSVCNV*AILH  5487

Narcissus late season yellows virus isolate Marijiniup8, complete genome

Sequence ID: Length: 9687 Number of Matches: 1

Range 1: 5214 to 5462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 41/83(49%) 0/83(0%) Minus/Plus
Query       66  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINF  314
                CKIAYTL      I  T+  ID L+AEER K EYF+TVT+N  + SNFS+ SI + IRSR++++H+REN+  L+A +  +  F
Subject   5214  CKIAYTLQTDVTAIQRTVRIIDTLIAEERVKQEYFKTVTSNVVSSSNFSLQSIANAIRSRFASDHTRENIGVLEAAKAQLCEF  5462

Nucleotide Sequence (351 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
351

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
203.6 1132.2 27% 6.033e-52 82% NC_003605
128.0 415.9 29% 3.465e-29 33% NC_001445
128.0 257.5 29% 3.516e-29 32% NC_018093
128.0 277.2 30% 3.516e-29 37% NC_002509
126.6 198.7 32% 9.116e-29 51% NC_001841

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 6911 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 79/91(87%) 0/91(0%) Minus/Minus
Query       79  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP  351
                CSDPVFPQEAVVH CCHARL YGAG ALIL+*GSN+ANLLSFDRWTEFQ LW+RREVWC+ND+HYVPSF RKYFELRCI K+VFTMSRLNP
Subject   6911  CSDPVFPQEAVVHGCCHARLGYGAGYALILK*GSNKANLLSFDRWTEFQFLWERREVWCKNDDHYVPSFARKYFELRCIWKNVFTMSRLNP  7183

Range 2: 6919 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.5 bits(429) 0.0 84/88(95%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                VVIQCFHKKLLSTGVVTLVSDTVL MLLS NKDPTRQIFSPLIGGRNFSFCGNGGKSGVRM+TIMSLPSQGSTLSCVVFG TYSPCLD
Subject   6919  VVIQCFHKKLLSTGVVTLVSDTVLVMLLS*NKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMMTIMSLPSQGSTLSCVVFGRTYSPCLD  7182

Range 3: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 90/94(96%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT
Subject   6902  GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT  7183

Range 4: 6901 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 77/94(82%) 0/94(0%) Plus/Plus
Query       69  WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY  350
                WR+ GS+ETW*IR+S+YNA QSTSL RKGHNG+HS+TRLPSV TK EIPSTDQRREDLP WILI  *EH QHRI DERDNT GQQLLVETLDHY
Subject   6901  WRTKGSVETW*IRSSKYNATQSTSLRRKGHNGHHSYTRLPSVPTKTEIPSTDQRREDLPCWILISR*EHNQHRIRDERDNTRGQQLLVETLDHY  7182

Range 5: 6912 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.4 bits(383) 0.0 75/90(83%) 0/90(0%) Plus/Plus
Query       80  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  349
                GF+RDMVNT F+IQR+SKYFL KEGT*W SF HQTSLR HK+*NSVHRSKERRFA LDPY +IRA PAPY RRA*QH WTTASCGNTGSL
Subject   6912  GFSRDMVNTFFQIQRNSKYFLAKEGT*WSSFLHQTSLRSHKN*NSVHRSKERRFALLDPYFKIRA*PAPYPRRA*QHPWTTASCGNTGSL  7181

Range 6: 6903 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 78/93(84%) 0/93(0%) Minus/Minus
Query       71  **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR  349
                **SSVSTRSCCP VLSRSS+IRCW CSY  IRIQ+GKSSLL*SVDGIS FV TEGSLV*E**PLCPFL KEVL* ALY E RIHHVS EP +R
Subject   6903  **SSVSTRSCCPRVLSRSSRIRCWLCSYLEIRIQQGKSSLL*SVDGISVFVGTEGSLV*E**PLCPFLRKEVL*VALYLEERIHHVSTEPLVR  7181

Plum pox virus, complete genome

Sequence ID: Length: 9741 Number of Matches: 5

Range 1: 6450 to 6731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 56/94(60%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + ++S HGE+V+ +T  LK+LPC+GRDI++I L  DFPPFP++L+FR P   +++CL+GS FQ KSISST+SETS T PVDNS  WKHWI+T
Subject   6450  GELTIRSHHGEFVVKDTKTLKLLPCKGRDIVIIRLPKDFPPFPRRLQFRTPTTEDRVCLIGSNFQTKSISSTMSETSATYPVDNSHFWKHWIST  6731

Range 2: 6467 to 6730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 45/88(51%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                V+IQCF K LLSTG V LVSD VLEML  W  +P +Q  S ++G RN +  G GGKS   ++  MS P QGS+L   V  +T SP  D
Subject   6467  VLIQCFQK*LLSTGYVALVSDMVLEMLFVWKFEPIKQTLSSVVGVRNCNLLGKGGKSFGNLMITMSRPLQGSSLRVFVSFTTNSP*CD  6730

Range 3: 6468 to 6728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 39/87(45%) 0/87(0%) Minus/Minus
Query       88  SDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSR  348
                ++PVFP+  V++W C A  R+GA +AL LE  +N  N +   R  E Q   KRREV   +D+HYVP+F RK FE  C+  + F M R
Subject   6468  TNPVFPEMTVINWICCACFRHGA*NALRLEI*TN*TNSVLSRRGAELQPPRKRREVLW*SDDHYVPTFARKQFESFCVLHYEFPMMR  6728

Range 4: 6452 to 6730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 31/93(33%) 0/93(0%) Plus/Plus
Query       72  RSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY  350
                R+   I +W IR+  +  +Q+ SL R GH+ +     LPS S +  +P  D   + L  W   P  EH +H + ++R+ +S  Q  +ETLD Y
Subject   6452  RANNPIASWGIRSEGHKNSQTASLQRSGHSDHQITKGLPSFSEEVAVPHPDD*GQSLFNWFKFPNEEHFKHHVGNKRNISS**QSFLETLD*Y  6730

Range 5: 6466 to 6723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 33/86(38%) 0/86(0%) Plus/Plus
Query       86  NRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTG  343
                +R M N+  R Q+ S  FL K GT*  S   +TSL F    +S  R     F  L   S+ RA  AP  ++A   Q  T   GNTG
Subject   6466  DRIMGNS**RTQKLSNCFLAKVGT**SSDYQRTSLLFRGGCSSAPRRLRTEFV*LVQISKRRAFQAPCRKQAQHIQLITVISGNTG  6723

Sweet potato virus G isolate Jesus Maria, complete genome

Sequence ID: Length: 10798 Number of Matches: 3

Range 1: 7375 to 7656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 60/94(64%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + ++SRHGE+ + NTTQL + PCE RDI++I +  D PPFPQKL+FR P + E+ICLVGS FQDKSI+STVSETSVT  V+NS  WKHWI T
Subject   7375  GELTIKSRHGEFHIKNTTQLNMAPCEERDILIIKMPKDVPPFPQKLRFRQPKENERICLVGSNFQDKSITSTVSETSVTCRVNNSHFWKHWIDT  7656

Range 2: 7392 to 7655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 45/88(51%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                V IQCF K  L T  VTLVS+TVL +LLSW  DPT+QI S   G RN SF G GG S   ++  +SL S G+  + VVF    SP  D
Subject   7392  VSIQCFQKCELFTLHVTLVSETVLVILLSWKFDPTKQILSFSFG*RNRSF*GKGGTSLGILMINISLSSHGAMFNWVVFLMWNSPWRD  7655

Range 3: 7387 to 7656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 29/90(32%) 0/90(0%) Minus/Minus
Query       82  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLN  351
                C +PV P+  V+H  C+      A D LILE   ++ N L     T+ +LL KR  +    D+ Y+  F R + +L C+     +M+ LN
Subject   7387  CINPVLPKM*VIHSACNTGF*DCARDTLILEI*PHQTNSLILFWLTKSKLLRKRGNILGHFDD*YISLFARCHVQLGCVFDVELSMAGLN  7656

Turnip mosaic virus, complete genome

Sequence ID: Length: 9835 Number of Matches: 3

Range 1: 6635 to 6916 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 58/94(62%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + ++SRHGE+V+ NTTQL +LP   RD+++I L  D PPFPQKL FR P KGE+IC+VGS FQ KSI+S VSETS   PV+NS  WKHWI+T
Subject   6635  GELVIKSRHGEFVIKNTTQLHLLPIPDRDLLLIRLPKDVPPFPQKLGFRQPEKGERICMVGSNFQTKSITSIVSETSTIMPVENSQFWKHWIST  6916

Range 2: 6652 to 6915 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 46/88(52%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                V+IQCF   L STG++ LVS+T+L MLL W  DPT QI SP  G    +FCG GG S    I+  SL   GS  S VVF  T SPC D
Subject   6652  VLIQCFQN*LFSTGIIVLVSETILVMLLVWKLDPTMQIRSPFSGCLKPNFCGKGGTSFGNRISRRSLSGIGSKCS*VVFLITNSPCRD  6915

Range 3: 6656 to 6913 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 32/86(37%) 0/86(0%) Minus/Minus
Query       91  SDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMS  348
                ++PVFP+  V+HW     LR     AL LE G + AN  +F R  E Q LWK  +V    D   +  + R    L C+  H  TMS
Subject   6656  ANPVFPKLTVLHWHYCTSLRDYTRYALGLEIGPHHANSFTFLRLPETQFLWKGWDVLW*PD*QKISVWNR*QV*LSCVFNHELTMS  6913

Sweet potato feathery mottle virus, complete genome

Sequence ID: Length: 10820 Number of Matches: 2

Range 1: 7516 to 7797 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.6 bits(270) 0.0 59/94(63%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + ++SRHGE+V+ NTTQL + PC  RDI++I +  D PPFPQ+LKFR P + E+ICLVGS FQDKSI+ST+SETSVT  V NS  WKHWI T
Subject   7516  GTLTIRSRHGEFVIKNTTQLGMKPCADRDILIIRMPKDIPPFPQRLKFRVPKENERICLVGSNFQDKSITSTISETSVTCHVPNSHFWKHWIDT  7797

Range 2: 7542 to 7796 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 43/85(51%) 0/85(0%) Minus/Minus
Query       96  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSP  350
                V IQCF K    T  VTLVS+ VL + LS   DPT+QI S   G  NF  CGNGG S   ++  MSL +QG   S VVF  T SP
Subject   7542  VSIQCFQKCEFGT*HVTLVSEIVLVIDLS*KFDPTKQILSFSFGTLNFRRCGNGGISLGILMMSMSLSAQGFIPS*VVFLMTNSP  7796

Nucleotide Sequence (326 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
326

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
183.9 904.2 33% 4.552e-46 79% NC_003605
106.5 152.9 37% 9.314e-23 54% NC_018093
111.5 159.3 23% 2.831e-24 32% NC_030293
102.8 102.8 24% 1.182e-21 56% NC_010736
102.8 148.3 38% 1.182e-21 50% NC_001616

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 7

Range 1: 4055 to 4294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 76/80(95%) 0/80(0%) Plus/Plus
Query        3  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK  242
                C+DDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+
Subject   4055  CDDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE  4294

Range 2: 4055 to 4294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 64/80(80%) 0/80(0%) Minus/Minus
Query        3  FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA  242
                FGCH RSCFTSERHEVP CSVVCH VAS+QLVVPPL ECR++HARRV+FFSFNLEIY  FLLI+ +ND INAL+AYII+A
Subject   4055  FGCHTRSCFTSERHEVPFCSVVCHCVASHQLVVPPLAECRVYHARRVKFFSFNLEIYRLFLLIEQVNDFINALVAYIIIA  4294

Range 3: 4053 to 4292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 64/80(80%) 0/80(0%) Plus/Plus
Query        1  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  240
                RA MMYA RALM+SL   MRRK+ *ISRLKEKN TLLAW  RHS SGGTTNW EAT+WHTTEQ+GTS*RSLVKQLR WQP
Subject   4053  RAMMMYATRALMKSLTCSMRRKRR*ISRLKEKNFTLLAW*TRHSASGGTTNWCEATQWHTTEQKGTS*RSLVKQLRVWQP  4292

Range 4: 4053 to 4289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 63/79(80%) 0/79(0%) Minus/Minus
Query        1  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  237
                LP SQLFHE*TS*SA LFCSVP CCL PIGCP T *MS+ PREKSKVLFLQSRNL  LSSH+  Q* HQRS GVHH RT
Subject   4053  LPHSQLFHE*TS*SALLFCSVPLCCLAPIGCPTTC*MSSLPREKSKVLFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT  4289

Range 5: 4054 to 4293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 63/80(79%) 0/80(0%) Plus/Plus
Query        2  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ  241
                VR *CTP ER**+H* + *EER+ RFRD*RKRTLLFSRG  DIQ V GQPIG RQH+GTLQNR ALHDVHS*NSCE GS+
Subject   4054  VR**CTPPER**NH*PVR*EERDDRFRD*RKRTLLFSRGRLDIQQVVGQPIGARQHNGTLQNRRALHDVHS*NSCECGSR  4293

Range 6: 4153 to 4290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query      101  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVESTTREE*  238
                AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLS HLLNVESTTREE*
Subject   4153  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSHHLLNVESTTREE*  4290

Range 7: 4054 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/10(90%) 0/10(0%) Minus/Minus
Query        2  TL*WRTSSSH  31
                TL WRTSSSH
Subject   4054  TLWWRTSSSH  4083

Sweet potato virus G isolate Jesus Maria, complete genome

Sequence ID: Length: 10798 Number of Matches: 2

Range 1: 4531 to 4764 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 43/78(55%) 0/78(0%) Plus/Plus
Query        3  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA  236
                C   V HQS+D+I + F+EKK TIDFE++  E + ++  D+TF  W  NQL R NT+ HYRTEGHFM FTR  A SVA
Subject   4531  CGGPVYHQSLDDITNEFEEKKLTIDFELQSDESHINQECDATFDTWWKNQLARNNTIPHYRTEGHFMEFTRANAVSVA  4764

Range 2: 4647 to 4769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 22/41(54%) 0/41(0%) Minus/Minus
Query      119  LAATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVES  241
                L AT  A + VN +K PSVL*C IVL R +W   H+ NV S
Subject   4647  LLATETAFALVNSIKWPSVL*CGIVLFRASWFFHHVSNVAS  4769

Pecan mosaic-associated virus isolate LA, complete genome

Sequence ID: Length: 9310 Number of Matches: 2

Range 1: 3265 to 3495 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 44/77(57%) 0/77(0%) Plus/Plus
Query        6  EDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA  236
                +D +  QS+D+I D+  EKK+TIDF +EG E  +S+V ++TF +W +NQL+ GNT+ HYR+EGHFM FTRETAA VA
Subject   3265  DDCMTFQSLDDISDVLTEKKQTIDFTLEGAESNTSQVGNTTFGQWWENQLMSGNTLPHYRSEGHFMRFTRETAADVA  3495

Range 2: 3265 to 3492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 24/76(32%) 0/76(0%) Minus/Minus
Query        6  HARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIIL  233
                + R C  SE H+V L S+V  RV+++ L+ PPL+E  + + R V   +   EI   FL  + + +++  L  + I+
Subject   3265  YIRCCLPSEPHKVTLRSIVR*RVSTH*LIFPPLSEGCVPNLRCVALCTLECEIDRLFLFREHVANVVKTLKRHAII  3492

Algerian watermelon mosaic virus, complete genome

Sequence ID: Length: 9842 Number of Matches: 1

Range 1: 3866 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 43/77(56%) 0/77(0%) Plus/Plus
Query        6  EDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA  236
                E DV HQS+D+I DLF++K+ TIDFEI+ +E  SS   D TFS+W DNQL R NT+ HYR  G F+ F+R  A+ VA
Subject   3866  EQDVYHQSLDDINDLFEDKQLTIDFEIDVQEGNSSTTFDHTFSRWWDNQLSRNNTVGHYRIGGEFIEFSRSNASIVA  4096

Potato virus Y, complete genome

Sequence ID: Length: 9704 Number of Matches: 2

Range 1: 3641 to 3865 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 41/75(55%) 0/75(0%) Plus/Plus
Query       12  DVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVA  236
                +VRHQS+D++I  FDE+ E IDFE+      +S V+D+ FS W D Q+  G+T+ HYRTEGHFM FTR TA  VA
Subject   3641  EVRHQSLDDVIKNFDERNEIIDFELSEDTIRTSSVLDTKFSDWWDRQIQMGHTLPHYRTEGHFMEFTRATAVQVA  3865

Range 2: 3736 to 3879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 24/48(50%) 0/48(0%) Minus/Minus
Query      107  WVCLAATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVESTTRE  250
                W    AT  AV+ VN MKCPSVL*C  V P     S   LN  S+T E
Subject   3736  WAMSLAT*TAVALVNSMKCPSVL*CGSVCPIWICRSHQSLNFVSSTDE  3879

Nucleotide Sequence (188 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
19
38
57
76
95
114
133
152
171
188

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
104.6 563.3 26% 6.191e-23 62% NC_003605
57.9 57.9 26% 1.149e-08 44% NC_021065
53.3 53.3 25% 2.752e-07 45% NC_004426
51.9 51.9 25% 7.136e-07 45% NC_010735
54.7 54.7 24% 1.061e-07 43% NC_014536

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 7

Range 1: 1277 to 1417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 41/47(87%) 0/47(0%) Minus/Minus
Query        2  AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ  142
                AVLNH VR+GVCDL+LR+YNFTIYP PNNEYT SP*TKFSYDF*RVQ
Subject   1277  AVLNHAVREGVCDLTLRVYNFTIYPPPNNEYTVSP*TKFSYDF*RVQ  1417

Range 2: 2570 to 2608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 8/13(62%) 0/13(0%) Minus/Minus
Query      121  VWAVCSLY*TIRC  159
                VW  CS Y T RC
Subject   2570  VWMKCSQYITSRC  2608

Range 3: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 39/48(81%) 0/48(0%) Plus/Plus
Query        1  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR  144
                IELVKNHR+IWFKATQYIRC*G G W*+YR AK GHT  HAP+GSIQR
Subject   1276  IELVKNHRRIWFKATQYIRC*GEGIW*NYRLAK*GHTHPHAPHGSIQR  1419

Range 4: 1277 to 1420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 39/48(81%) 0/48(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE  145
                LNSSKIIG+FGLRR SIFVVRGRV G++IDSQ KVTH++THRMVQYS+
Subject   1277  LNSSKIIGEFGLRRHSIFVVRGRVYGKIIDSQSKVTHTLTHRMVQYSD  1420

Range 5: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 41/47(87%) 0/47(0%) Plus/Plus
Query        3  *TRQKS*ENLV*GDAVYSLLGVG*MVKL*IRKERSHTPSRTVWFNTA  143
                *TRQKS*ENLV*GD VYSLLG G MVKL* RK RSHTPSRT WFNTA
Subject   1278  *TRQKS*ENLV*GDTVYSLLGGGYMVKL*TRKVRSHTPSRTAWFNTA  1418

Range 6: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 37/47(79%) 0/47(0%) Minus/Minus
Query        3  RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  143
                RCIEP GA*  V*P+FA+L* +H+P P*QRIYCVALNQI L*FLTSS
Subject   1278  RCIEPCGA*GCV*PYFASL*FYHIPSP*QRIYCVALNQILL*FLTSS  1418

Range 7: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 39/48(81%) 0/48(0%) Minus/Minus
Query        1  SLY*TIRCVMECVTFLCESIXXXXXXXXXTNILRRLKPNFPMIFDEFN  144
                SLY*T+RCV  CVT LCESI  P TLPLTTNIL RLKPN PMIFDEFN
Subject   1276  SLY*TMRCVRVCVTLLCESIILPYTLPLTTNILCRLKPNSPMIFDEFN  1419

Sunflower mild mosaic virus isolate Entre Rios, complete genome

Sequence ID: Length: 9718 Number of Matches: 1

Range 1: 1103 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 21/48(44%) 0/48(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE  145
                LN   + GK   +R  +F+VRGR DGE+++++ K +HS+ HRM  YS+
Subject   1103  LNHKILRGKVSRQRDGMFIVRGRCDGELLEARSKFSHSVVHRMTHYSD  1246

Wild potato mosaic virus, complete genome

Sequence ID: Length: 9878 Number of Matches: 1

Range 1: 913 to 1053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 21/47(45%) 0/47(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYS  142
                LNSS   GKFG    ++F+VRG  +G++ D++ K+T +   RM+QYS
Subject    913  LNSSVCRGKFGRNWDNLFIVRGEYEGKIFDARSKLTETTALRMIQYS  1053

Verbena virus Y, complete genome

Sequence ID: Length: 9742 Number of Matches: 1

Range 1: 852 to 992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 21/47(45%) 0/47(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYS  142
                LN  ++ GK G     IF+VRG+ D  V+D++ +VT+S+ HRM Q+S
Subject    852  LNPDRMHGKRGRCADGIFIVRGKCDNVVLDARSRVTNSVMHRMQQFS  992

Brugmansia suaveolens mottle virus, complete genome

Sequence ID: Length: 9870 Number of Matches: 1

Range 1: 950 to 1087 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 20/46(43%) 0/46(0%) Plus/Plus
Query        5  NSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYS  142
                N     G+FG  +  +F+VRGR+DG ++D+Q KV++ + HRM  YS
Subject    950  NGELCCGQFGRCKNGMFIVRGRLDGMMVDAQSKVSYHVMHRMHHYS  1087

Nucleotide Sequence (159 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
16
32
48
64
80
96
112
128
144
159

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
94.5 482.0 14% 6.188e-20 76% NC_003605
62.2 62.2 32% 2.966e-10 67% NC_014898
69.3 69.3 31% 2.045e-12 65% NC_030847
63.1 63.1 31% 1.592e-10 55% NC_009995
62.2 62.2 30% 2.966e-10 62% NC_017824

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 6

Range 1: 3995 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(204) 0.0 49/51(96%) 0/51(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  157
                SERSDCVYRSLSKLKSLVST +DDVRHQSVDEIIDLFDEKKETIDFEIEGK
Subject   3995  SERSDCVYRSLSKLKSLVSTCDDDVRHQSVDEIIDLFDEKKETIDFEIEGK  4147

Range 2: 3992 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 41/52(79%) 0/52(0%) Minus/Minus
Query        2  FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL  157
                FSFNLEIY  FLLI+ VND INAL+AYII+ARRY**F+L**TPVH IT LT+
Subject   3992  FSFNLEIYRLFLLIEQVNDFINALVAYIIIARRY**FKL**TPVHTITPLTI  4147

Range 3: 3996 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 41/51(80%) 0/51(0%) Plus/Plus
Query        6  VREVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  158
                VR VI CTGVYQS NH*YLRA MMYA RALM+SLT  MRRK+ *ISRLKEK
Subject   3996  VRGVIVCTGVYQSLNH*YLRAMMMYATRALMKSLTCSMRRKRR*ISRLKEK  4148

Range 4: 3996 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 40/51(78%) 0/51(0%) Minus/Minus
Query        6  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFSH  158
                LFLQSRNL  LSSH+ GQ* HQRS GVHH R+*ILMI*ALI+SCT NH SH
Subject   3996  LFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT*ILMI*ALIDSCTHNHSSH  4148

Range 5: 3997 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 39/51(76%) 0/51(0%) Plus/Plus
Query        7  *EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR  159
                *E+*L VQE IKA IISIY R *CTP ER**+H*P+ *EER+ RFRD*RKR
Subject   3997  *EE*LCVQESIKA*IISIYVR**CTPPER**NH*PVR*EERDDRFRD*RKR  4149

Range 6: 3994 to 4053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query        4  VDTNDLSFDKLLYTQSLLSL  63
                VDTNDLSFD+LLYTQSLLSL
Subject   3994  VDTNDLSFDRLLYTQSLLSL  4053

Lupine mosaic virus, complete genome

Sequence ID: Length: 10113 Number of Matches: 1

Range 1: 4043 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.2 bits(132) 0.0 34/51(67%) 0/51(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  157
                SERSD +Y++L+KLKSLV T +DDV HQS+D+I  L D+KK TIDFEI+GK
Subject   4043  SERSDYLYKTLNKLKSLVRTVDDDVYHQSLDDIESLDDDKKLTIDFEIDGK  4195

Brazilian weed virus Y isolate KLL097, complete genome

Sequence ID: Length: 9837 Number of Matches: 1

Range 1: 3651 to 3797 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(148) 0.0 32/49(65%) 0/49(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIE  151
                SERSDCV+R+L+KLKS+V + ++DVRHQS+D+IID+FD+KK TIDF ++
Subject   3651  SERSDCVFRTLNKLKSVVGSLDNDVRHQSLDDIIDIFDDKKHTIDFTLD  3797

Moroccan watermelon mosaic virus, complete genome

Sequence ID: Length: 9730 Number of Matches: 1

Range 1: 3676 to 3822 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.1 bits(134) 0.0 27/49(55%) 0/49(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIE  151
                +E+SDCVYR L+K K +V T E DV HQS+D+I DL+++K++TIDF+++
Subject   3676  AEKSDCVYRVLNKFKGVVGTIEQDVYHQSLDDIQDLYEDKQQTIDFDLD  3822

Tomato necrotic stunt virus, complete genome

Sequence ID: Length: 10057 Number of Matches: 1

Range 1: 3740 to 3883 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.2 bits(132) 0.0 30/48(62%) 0/48(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEI  148
                +ERSDCV+++L+KLKS +ST + +VRHQS+DEI D  D+KK TIDFE+
Subject   3740  AERSDCVFKTLNKLKSTISTMDYEVRHQSLDEIADTLDDKKLTIDFEL  3883

Nucleotide Sequence (431 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
431

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
303.9 1449.5 25% 5.149e-82 77% NC_003605
199.5 306.1 26% 1.448e-50 45% NC_030293
180.2 379.2 32% 8.996e-45 35% NC_002509
183.4 261.9 48% 9.739e-46 57% NC_029051
183.4 303.8 18% 9.739e-46 47% NC_001445

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 7

Range 1: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.9 bits(657) 0.0 126/129(98%) 0/129(0%) Plus/Plus
Query       43  VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  429
                VW  INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAE+G
Subject   7376  VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEKG  7762

Range 2: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 108/129(84%) 0/129(0%) Minus/Minus
Query       43  SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN  429
                SFFGFQKRV IDDA+CYRCGVFHDVFC+CFSV AALLVGSHQWFEE LFLFVCLQV*L+HHALTLDCVLC+ELACA PHCFQVAFQLTC+P +LFGLKLYC+ E*VCH*FVY EGF W  I++IY  PN
Subject   7376  SFFGFQKRVTIDDAYCYRCGVFHDVFCKCFSV*AALLVGSHQWFEEFLFLFVCLQV*LEHHALTLDCVLCHELACAFPHCFQVAFQLTCEPLILFGLKLYCIPE*VCH*FVYLEGFPWRAINEIYASPN  7762

Range 3: 7375 to 7761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.1 bits(557) 0.0 122/129(95%) 0/129(0%) Minus/Minus
Query       42  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT  428
                P SAF+NVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRY+SNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM  QT
Subject   7375  PFSAFRNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYNSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT  7761

Range 4: 7378 to 7764 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 103/129(80%) 0/129(0%) Plus/Plus
Query       45  LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS  431
                LGRHKS+ *+ K TLQ+KQISDR IR  STVS+QT  +V KS+ERQLESSGE+HKPTR+KAHSQG*VHDV  IPANTRRGKG+LQTTDGSLPEEPL+QRSI+KRHHEILHTDNS HRRL HV ESR+RS
Subject   7378  LGRHKSH**HAKGTLQDKQISDRLIRGCSTVSVQTG*VVRKSVERQLESSGEKHKPTRDKAHSQG*VHDVRVIPANTRRGKGILQTTDGSLPEEPLKQRSIYKRHHEILHTDNSRHRRL*HVSESRKRS  7764

Range 5: 7377 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.3 bits(505) 0.0 107/129(83%) 0/129(0%) Plus/Plus
Query       44  FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE  430
                FG  *I  I  Q NPS+*TN**QTYS  QYSF+PN+ +G QV+*KAT*KQWG+AQANS*QSTQSRVSA*C SYTCKHTKRKR+SSNH*WEPTRRAA*TEKH QKTS*NTPHR*Q ASSI TRF*KPKKE
Subject   7377  FGEA*ISLIARQGNPSR*TN**QTYSGMQYSFSPNRMSGSQVS*KAT*KQWGKAQANS*QSTQSRVSA*CSSYTCKHTKRKRNSSNH*WEPTRRAA*TEKHLQKTS*NTPHR*Q*ASSIVTRF*KPKKE  7763

Range 6: 7377 to 7637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 67/87(77%) 0/87(0%) Minus/Minus
Query       44  VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK  304
                VV*R PFPLRVFAGI +TSCTYP*LCAL RVGLC SPLLSSCLS DL+T   VW ETVL  RI LSLICL *RV L  Y**DL  PK
Subject   7377  VV*RIPFPLRVFAGITRTSCTYP*LCALSRVGLCFSPLLSSCLSTDLRTTHPVWTETVLHPRISLSLICLS*RVPLACY**DLCLPK  7637

Range 7: 7704 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 16/20(80%) 0/20(0%) Minus/Minus
Query      371  LLLRLSKTCRNRRCPLLSVW  430
                LL RLS+TC NRRC LLSVW
Subject   7704  LLFRLSETCHNRRCLLLSVW  7763

Pecan mosaic-associated virus isolate LA, complete genome

Sequence ID: Length: 9310 Number of Matches: 3

Range 1: 6583 to 6966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.5 bits(429) 0.0 78/128(61%) 0/128(0%) Plus/Plus
Query       43  VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEE  426
                VW ++ L + TP++ FKI+K++TDLF D+++FQ  ++ WF +QL GNLKAV +S+SQLVTKH VKGKCM+F LYL TH EE  +F+  MGAY KSRLNREAF+KD++KYS PITVG VD D F  A E
Subject   6583  VWGSLELSDGTPKDQFKISKIITDLFSDSMKFQGLEESWFMAQLSGNLKAVARSSSQLVTKHVVKGKCMLFSLYLSTHPEENAYFQQYMGAYGKSRLNREAFSKDLLKYSKPITVGQVDADAFEMATE  6966

Range 2: 6582 to 6794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 32/71(45%) 0/71(0%) Minus/Minus
Query       42  NIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT  254
                N +H P T CFVT+ L L  TAFK P N   NH S   *N   S N+SV    IL  S GV  +     QT
Subject   6582  NSIHFPFTTCFVTN*LELRATAFKFPLNCAINHDSSRP*NFMLSLNKSVMIFDILNWSFGVPSLNSRLPQT  6794

Range 3: 6846 to 6965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 23/40(57%) 0/40(0%) Minus/Minus
Query      306  SSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*API  425
                S A    S ST PTV+G EY   SF  ASLFKRLF  AP+
Subject   6846  SVAISKASAST*PTVMGFEYLSRSFEKASLFKRLFPYAPM  6965

Turnip mosaic virus, complete genome

Sequence ID: Length: 9835 Number of Matches: 5

Range 1: 7112 to 7492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.2 bits(387) 0.0 69/127(54%) 0/127(0%) Plus/Plus
Query       46  WVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEE  426
                W ++N+  S P   FK++KL++DL   AV  Q++Q+ W   QL GNLKA+    SQLVTKHTVKGKC MF+LYL+ H+E +E+F+P++G YQKS+LNREA+ KD++KY+TPI  G +DCD F K  E
Subject   7112  WGSLNIQASQPSGLFKVSKLISDLDSTAVYAQTQQNRWMFEQLNGNLKAIAHCPSQLVTKHTVKGKCQMFDLYLKLHDEAREYFQPMLGQYQKSKLNREAYAKDLLKYATPIEAGNIDCDLFEKTVE  7492

Range 2: 7156 to 7491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 53/112(47%) 0/112(0%) Minus/Minus
Query       90  SSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFIL  425
                S+ F N SQS  P  IGV YF  SF  AS    LF   P  G K S +SSC  RY SNI H PLTVCFVTSWL     AF+ P +    H  C     TA  +RS  +L  L
Subject   7156  STVFSNRSQSMFPASIGVAYFRRSFAYASRLSLLF*YWPSIGWKYSRASSCNLRYKSNI*HFPLTVCFVTSWLGQCAIAFRFPLSCSNIHRFCWVCA*TAVLSRSEISLLTL  7491

Range 3: 7154 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 23/61(38%) 0/61(0%) Minus/Minus
Query       88  LQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFE  270
                L++ +KH   + +CVLC++LA A+ + F V  +L   P +L GL + C +  V  *  YFE
Subject   7154  LEIQVKHLTFSFNCVLCHKLARAVCYRF*VPVELLEHPPILLGLCVDCRAVEV*D*LAYFE  7336

Range 4: 7382 to 7435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 8/18(44%) 0/18(0%) Minus/Minus
Query      316  VFHDVFCECFSVQAALLV  369
                +F  + C CFS++ ALL+
Subject   7382  IFQKILCICFSIEFALLI  7435

Range 5: 7155 to 7433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 33/93(35%) 0/93(0%) Plus/Plus
Query       89  SK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*N  367
                SK* +* QT +  Q +  P++  G   +   T*K+   A A+ *QSTQ + +  CL+       +  S SN  W   +RA   EKH Q+  *N
Subject   7155  SK*AS*SQTSTARQSTHKPSRIGGCSSSSTGT*KR*HTALASL*QSTQLKENVRCLTCISSCMMKHESISNRCWASIKRANSIEKHMQRIF*N  7433

Jasmine ringspot virus, complete genome

Sequence ID: Length: 9590 Number of Matches: 2

Range 1: 6875 to 7249 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.4 bits(394) 0.0 74/125(59%) 0/125(0%) Plus/Plus
Query       46  WVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKA  420
                W  + L +S P + FK++KLV+DL  D V  QSK   W   +L GNL+AV    +QLVTKH VKGKC +FE+YLQTH+EE++FFKPLMGAY KS+LNREA+ KD++KY++PITVG VDCD F +A
Subject   6875  WGDMRLRDSAPIDLFKVSKLVSDLESDFVHTQSKTHYWLRERLHGNLRAVASMENQLVTKHVVKGKCSLFEIYLQTHDEERKFFKPLMGAYGKSKLNREAYIKDLLKYASPITVGEVDCDIFEQA  7249

Range 2: 7006 to 7248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 46/81(57%) 0/81(0%) Minus/Minus
Query      177  AFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLP  419
                A   +SQST PTVIG  Y   S + AS F  LF  APISGLKN  SSSCVC+  SN  HLP T C VT+W  +  TA KLP
Subject   7006  ACSKISQSTSPTVIGEAYLSKSLIYASRFNLLFPYAPISGLKNFRSSSCVCK*ISNREHLPFTTCLVTNWFSIDATARKLP  7248

Plum pox virus, complete genome

Sequence ID: Length: 9741 Number of Matches: 3

Range 1: 6927 to 7301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.4 bits(394) 0.0 75/125(60%) 0/125(0%) Plus/Plus
Query       46  WVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKA  420
                W ++ L    P+ PF I KL+TDL G+ V  QSK   W   +L+GNLKAVG    QLVTKH VKGKC +FE YL TH EE EFF+PLMGAYQKS LN++A+ KD+MKYS PI VG VDCD F +A
Subject   6927  WGSLQLKRDIPQSPFTICKLLTDLDGEFVYTQSKTTHWLRDRLEGNLKAVGACPGQLVTKHVVKGKCTLFETYLLTHPEEHEFFRPLMGAYQKSALNKDAYVKDLMKYSKPIVVGAVDCDQFERA  7301

Range 2: 7172 to 7306 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 28/45(62%) 0/45(0%) Minus/Minus
Query      291  SSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKN  425
                S+A  N SQST PT IG EYF+ S   ASLF+ LFW API G KN
Subject   7172  STARSN*SQSTAPTTIGFEYFIRSLTYASLFRALFWYAPIKGRKN  7306

Range 3: 6944 to 7129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 29/62(47%) 0/62(0%) Minus/Minus
Query       63  MHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLI  248
                +HLPLT C VT+     PTAFK P N   +    LD*  T SP+RSV++L I+ G  G+ L+
Subject   6944  VHLPLTTCLVTNCPGQAPTAFKFPSNLSLSQCVVLD*V*TNSPSRSVSSLQIVNGLCGMSLL  7129

Nucleotide Sequence (203 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
21
42
63
84
105
126
147
168
189
203

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
153.5 690.0 32% 2.496e-37 76% NC_003605
93.4 93.4 33% 2.804e-19 57% NC_010736
90.2 90.2 33% 2.547e-18 54% NC_029051
91.6 91.6 33% 9.894e-19 52% NC_030847
89.8 89.8 32% 3.491e-18 55% NC_014898

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 7

Range 1: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.5 bits(331) 0.0 63/67(94%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                RSDCVYRSLSKLKSLVSTC+DDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N
Subject   4001  RSDCVYRSLSKLKSLVSTCDDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN  4201

Range 2: 4004 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.5 bits(261) 0.0 52/66(79%) 0/66(0%) Plus/Minus
Query        2  VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAIT  199
                V PPL ECR++HARRVKFFSFNLEIYR FLLI+ +ND I+AL+AYII+ARRY**F+L**TPVH IT
Subject   4004  VVPPLAECRVYHARRVKFFSFNLEIYRLFLLIEQVNDFINALVAYIIIARRY**FKL**TPVHTIT  4201

Range 3: 4005 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 52/66(79%) 0/66(0%) Minus/Plus
Query        1  VIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST  198
                VI CTGVYQS NH*YLRA MMYA RALM+SL   MRRK  *ISRLKEKNFTLLAW  RHS SGG+T
Subject   4005  VIVCTGVYQSLNH*YLRAMMMYATRALMKSLTCSMRRKRR*ISRLKEKNFTLLAW*TRHSASGGTT  4202

Range 4: 4005 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 51/66(77%) 0/66(0%) Plus/Minus
Query        1  G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH  198
                G  TT *MS+ PREKSKVLFLQSRNL  LSSH+  Q* HQRS GVHH RT*ILMI*ALI+SCT NH
Subject   4005  GCPTTC*MSSLPREKSKVLFLQSRNLSSLSSHRTGQ*FHQRSGGVHHHRT*ILMI*ALIDSCTHNH  4202

Range 5: 4000 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 51/67(76%) 0/67(0%) Minus/Plus
Query        3  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ  203
                E+*L VQE IKA IISIYVR *CTP ER**+H* + *EER  RFRD*RKRTLLFSRG  DIQ VV Q
Subject   4000  EE*LCVQESIKA*IISIYVR**CTPPER**NH*PVR*EERDDRFRD*RKRTLLFSRGRLDIQQVVGQ  4200

Range 6: 4000 to 4074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 24/25(96%) 0/25(0%) Plus/Minus
Query      129  WRTSSSHVDTNDLSFDKLLYTQSLL  203
                WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  WRTSSSHVDTNDLSFDRLLYTQSLL  4074

Range 7: 4156 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 14/15(93%) 0/15(0%) Plus/Minus
Query        3  LIHHLLNVESTTREE  47
                L HHLLNVESTTREE
Subject   4156  LSHHLLNVESTTREE  4200

Algerian watermelon mosaic virus, complete genome

Sequence ID: Length: 9842 Number of Matches: 1

Range 1: 3809 to 4009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.4 bits(199) 0.0 38/67(57%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                +SDCVY+ L+K KS+V T E DV HQS D+I DLF++K+ +IDFEI+ +E  SS   D TFS+WW N
Subject   3809  KSDCVYKLLNKFKSVVGTIEQDVYHQSLDDINDLFEDKQLTIDFEIDVQEGNSSTTFDHTFSRWWDN  4009

Jasmine ringspot virus, complete genome

Sequence ID: Length: 9590 Number of Matches: 1

Range 1: 3527 to 3727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.2 bits(192) 0.0 36/67(54%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                RSDCVY+ L KLK+L+ TCE DV  QS DEI    +EK  ++DFE++G E   S V +STF +WW N
Subject   3527  RSDCVYKILMKLKNLIGTCEQDVHFQSLDEIQTHLEEKNLTVDFEMDGVETAESLVTESTFQQWWNN  3727

Brazilian weed virus Y isolate KLL097, complete genome

Sequence ID: Length: 9837 Number of Matches: 1

Range 1: 3657 to 3854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.6 bits(195) 0.0 34/66(52%) 0/66(0%) Minus/Plus
Query        5  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWI  202
                RSDCV+R+L+KLKS+V + ++DVRHQS D+IID+FD+KK +IDF ++          D++F  WWI
Subject   3657  RSDCVFRTLNKLKSVVGSLDNDVRHQSLDDIIDIFDDKKHTIDFTLDDDVFNPEVSTDTSFDSWWI  3854

Lupine mosaic virus, complete genome

Sequence ID: Length: 10113 Number of Matches: 1

Range 1: 4049 to 4243 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.8 bits(191) 0.0 36/65(55%) 0/65(0%) Minus/Plus
Query        8  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWW  202
                RSD +Y++L+KLKSLV T +DDV HQS D+I  L D+KK +IDFEI+GK+ +     + +FSKWW
Subject   4049  RSDYLYKTLNKLKSLVRTVDDDVYHQSLDDIESLDDDKKLTIDFEIDGKQAHGCTYKEMSFSKWW  4243

Nucleotide Sequence (347 letters)

Query ID:ds2016-121_19
Query definition:No definition line
Query length:287
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 15 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
347

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
228.3 1166.1 22% 2.117e-59 78% NC_003605
133.5 249.0 22% 7.554e-31 37% NC_031339
108.7 193.8 22% 2.151e-29 37% NC_025821
118.4 265.0 23% 9.329e-31 33% NC_018872
116.1 294.0 21% 1.747e-30 39% NC_021065

Alignments

Lettuce mosaic virus, complete genome

Sequence ID: Length: 10080 Number of Matches: 9

Range 1: 6251 to 6595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.3 bits(492) 0.0 111/115(97%) 0/115(0%) Plus/Plus
Query        1  ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS  345
                ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPED+SFIRFLDPLTGKTMDEQVF+DISLVQDAF KERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS
Subject   6251  ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDYSFIRFLDPLTGKTMDEQVFTDISLVQDAFGKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS  6595

Range 2: 6253 to 6597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.8 bits(480) 0.0 90/115(78%) 0/115(0%) Plus/Plus
Query        3  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL  347
                DDGTLFWSCV+ ER+EIRK+ERNG+EKSKIC +VW+QPRR L+HPISGP HRENNG TSI *HKSRPRCL * KTQTP+RR N +  HAK +*SLSCQESYHSS+R+RHDPSQLL
Subject   6253  DDGTLFWSCVHRERKEIRKDERNGDEKSKIC*HVWVQPRRLLVHPISGPTHRENNG*TSIH*HKSRPRCLW*RKTQTPVRRGN*VRAHAKWD*SLSCQESYHSSSRNRHDPSQLL  6597

Range 3: 6252 to 6596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 92/115(80%) 0/115(0%) Plus/Plus
Query        2  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL  346
                RRWNTILELR +RK RNPE+RKEW RKIEDL  CM TTQKI+ SSDFWT SQGKQW NKY LT*VSSKMPLV+KDSNS PK K ++STCE  LELILSRILPQQ S+*T*PLTTL
Subject   6252  RRWNTILELRTQRKERNPERRKEWGRKIEDLLTCMGTTQKITRSSDFWTHSQGKQWMNKYSLT*VSSKMPLVKKDSNSCPKGKLSQSTCEMGLELILSRILPQQLSK*T*PLTTL  6596

Range 4: 6251 to 6466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 58/72(81%) 0/72(0%) Minus/Minus
Query        1  TKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR  216
                TKGILDETYV +YLF+HCFPCE VQKSDE  IFWVV IH+ KSSIFR HSFR SGFL FL +RSSKIVFHRR
Subject   6251  TKGILDETYVSEYLFIHCFPCEWVQKSDERVIFWVVPIHVNKSSIFRPHSFRLSGFLSFLCVRSSKIVFHRR  6466

Range 5: 6509 to 6595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 25/29(86%) 0/29(0%) Minus/Minus
Query      259  RVVRGHVYLECCCGKILDKISSNSVSHVL  345
                RVVRGHVY E CCGKILDKISSN +SHVL
Subject   6509  RVVRGHVYFESCCGKILDKISSNPISHVL  6595

Range 6: 6351 to 6596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 64/82(78%) 0/82(0%) Minus/Minus
Query      101  KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHT  346
                KSCEGSCL R LLW*DS*QDKL*  FAC   +F LR GV*VF Y RHLGRDLCQ ILV PLFSL* GPEIG*  NLLGC HT
Subject   6351  KSCEGSCLFRELLW*DS*QDKL*SHFACALTQFPLRTGV*VFLYQRHLGRDLCQ*ILVHPLFSL*VGPEIG*TSNLLGCTHT  6596

Range 7: 6253 to 6453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 63/67(94%) 0/67(0%) Minus/Minus
Query        3  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV  203
                WTRLMS NTCSSIVFPVSGSRNRMNE SSGLYPY+ TNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV
Subject   6253  WTRLMSVNTCSSIVFPVSGSRNRMNE*SSGLYPYMLTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV  6453

Range 8: 6514 to 6597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 27/28(96%) 0/28(0%) Minus/Minus
Query      264  QEL*GVMSISSAAVVRFLTR*ALIPFRM  347
                QEL*GVMSIS AAVVRFLTR*ALIPFRM
Subject   6514  QEL*GVMSISRAAVVRFLTR*ALIPFRM  6597

Range 9: 6252 to 6281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 10/10(100%) 0/10(0%) Minus/Minus
Query        2  TQLQNSVPSS  31
                TQLQNSVPSS
Subject   6252  TQLQNSVPSS  6281

Euphorbia ringspot virus isolate PV-0902, complete genome

Sequence ID: Length: 10154 Number of Matches: 4

Range 1: 5847 to 6185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 63/113(56%) 0/113(0%) Plus/Plus
Query        4  TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHN  342
                TMEHYFG AYT KGKKSG+T+G G KNR+F+NMYG+NP+DFS +RF+DPLTG T+DE V++ I  VQD F + R + ++E  ++ + +  GI+AY  KN    AL++D+TPHN
Subject   5847  TMEHYFGEAYTAKGKKSGRTRGSGIKNRKFINMYGFNPDDFSAVRFVDPLTGCTLDESVYTSIRDVQDHFGQIREEAINEDLLDRQALGTGIQAYYTKNFQGKALKVDLTPHN  6185

Range 2: 5933 to 6043 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 23/37(62%) 0/37(0%) Minus/Minus
Query       90  TRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTN  200
                T L+   T SS V PVSGS NR  EKSSGL PY F N
Subject   5933  TSLILV*TLSSNVQPVSGSTNRTAEKSSGLNPYXFIN  6043

Range 3: 5846 to 5881 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 10/12(83%) 0/12(0%) Minus/Minus
Query        3  SVYAAPK*CSIV  38
                +VYA+PK*CSIV
Subject   5846  AVYASPK*CSIV  5881

Range 4: 5850 to 6062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 26/71(37%) 0/71(0%) Minus/Minus
Query        7  LTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFH  219
                L K IL  +      F+ C  CE + +S+ *+I W+ S+H YK SI  S     S  L F  +  SK++FH
Subject   5850  LAKVILHISDTSVNTFI*CATCEWIYESNC*KIIWIESVHXYKLSILNSTPSGSSTLLAFCGVCFSKVMFH  6062

Asparagus virus 1 isolate DSMZ PV-0954, complete genome

Sequence ID: Length: 9741 Number of Matches: 3

Range 1: 5897 to 6169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 49/91(54%) 0/91(0%) Plus/Plus
Query        4  TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNG  276
                T+EH+FG AYT+KGK  GKT+G GTK RRF+NMYGY+P D+SF+RF+DPLTG+T+D+  ++DI L+QD F+  R ++++ GE++ + +  G
Subject   5897  TLEHFFGEAYTKKGKTKGKTRGAGTKTRRFINMYGYDPADYSFVRFVDPLTGRTLDDSPYTDIGLIQDHFADVRDEMIANGELDRQRLHLG  6169

Range 2: 6176 to 6247 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 14/24(58%) 0/24(0%) Plus/Plus
Query      271  NGIRAYLVKNLTTAALEIDMTPHN  342
                N I AY + N T  AL++DMTPHN
Subject   6176  NRIEAYFINNATKKALQVDMTPHN  6247

Range 3: 5903 to 6112 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 26/70(37%) 0/70(0%) Minus/Minus
Query       10  LTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVF  219
                ++K IL ++ +  +  + C PC+R+ KS++  I WV+SIH+ KS  F   S R +    FLRI  +K +F
Subject   5903  ISKMILYQSNICVW*VIKCPPCQRINKSNKRIISWVISIHVDKSPCFCPSSSRLAFCFAFLRICFTKEMF  6112

Pokeweed mosaic virus isolate PkMV-PA, complete genome

Sequence ID: Length: 9512 Number of Matches: 4

Range 1: 5709 to 5978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 53/90(59%) 0/90(0%) Plus/Plus
Query        4  TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRN  273
                T+EH+FGAAYTEKGKK GKT GMG KNRRF +MYGY+P D++F+RF+DPLTGKT+D+  ++DI+L+Q AF +ER++++ E E++ + + N
Subject   5709  TIEHFFGAAYTEKGKKKGKTHGMGKKNRRFTHMYGYDPTDYTFVRFVDPLTGKTLDDSPYTDINLIQQAFGEERIRMIGEDELDPQQIMN  5978

Range 2: 5985 to 6053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 12/23(52%) 0/23(0%) Plus/Plus
Query      274  GIRAYLVKNLTTAALEIDMTPHN  342
                G++AY     T  ALE+D+TPHN
Subject   5985  GLKAYYGNQTTRKALEVDLTPHN  6053

Range 3: 5708 to 5908 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 42/67(63%) 0/67(0%) Minus/Minus
Query        3  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV  203
                W RLMS    SS VFPV+GS N     S G YPY+  N RFF+P+P+VFP F PFSVYAAPK CSIV
Subject   5708  WMRLMSVYGESSRVFPVNGSTNLTKV*SVGSYPYMCVNRRFFLPMPWVFPFFLPFSVYAAPKKCSIV  5908

Range 4: 5716 to 5931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 24/72(33%) 0/72(0%) Plus/Plus
Query       11  NTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKD  226
                N  L    +++ R  E+   W RK  D   CM TTQ+I+ SS  W     + W  ++  T  SS  PLV+++
Subject   5716  NISLVQHTQKRARRKERPMAWARKTGDSHTCMGTTQQITLSSGLWIH*LERPWMTRHTPTLTSSNKPLVKRE  5931

Sunflower mild mosaic virus isolate Entre Rios, complete genome

Sequence ID: Length: 9718 Number of Matches: 5

Range 1: 5969 to 6226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 53/86(62%) 0/86(0%) Plus/Plus
Query        4  TMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE  261
                ++EHYFG+AY  KGKK G  +GMG KNRRFVNMYGY+P D+SF+RF+DPLTG TMDE V++DI LVQ+A  K R + +++GE+E++
Subject   5969  SIEHYFGSAYNNKGKKKGTVRGMGHKNRRFVNMYGYDPTDYSFVRFVDPLTGATMDESVYADIGLVQEAIGKARQESIADGELEAQ  6226

Range 2: 6245 to 6316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 14/24(58%) 0/24(0%) Plus/Plus
Query      274  GIRAYLVKNLTTAALEIDMTPHNS  345
                GIRAY V + T  AL +D+TPH S
Subject   6245  GIRAYYVNDATKKALLVDLTPHRS  6316

Range 3: 5977 to 6147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 23/57(40%) 0/57(0%) Plus/Plus
Query       12  TLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSI  182
                TLFW  +  +REE R    NG++KS +C YV I+        I GP    NNGR  +
Subject   5977  TLFWISLQQQREEERHRAWNGSQKSSLC*YVRIRSYGL*FRSICGPFDGCNNGRIGV  6147

Range 4: 5976 to 6143 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 23/56(41%) 0/56(0%) Plus/Plus
Query       11  NTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNK  178
                N IL+     KGR      EW  KI  L IC DT  +   S D WT  + +QWTN+
Subject   5976  NIILDQLTTTKGRRKAPCVEWVTKIVALLICTDTILRTIVSFDLWTL*RVQQWTNR  6143

Range 5: 5972 to 6184 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 28/71(39%) 0/71(0%) Minus/Minus
Query        7  LTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFH  219
                L   +L+ + +R + FVHC   +RV KS+E  +  +VS+HI K++IF +HS   +  LPF+ +  SKI+F+
Subject   5972  LPNRLLN*SDIRVHRFVHCCTRQRVHKSNETIVRRIVSVHINKATIFVTHSTHGAFLLPFVVVS*SKIMFN  6184