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Nucleotide Sequence (270 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
27
54
81
108
135
162
189
216
243
270

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
62.5 327.2 15% 1.494e-08 80% HQ442266.1

Alignments

Grapevine leafroll associated virus 1 isolate 12.2.1 coat protein like gene, partial sequence

Sequence ID: HQ442266.1 Length: 544 Number of Matches: 6

Range 1: 439 to 528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 24/30(80%) 0/30(0%) Plus/Plus
Query       89  CQGCFH*SRTKVGGSKTIRYRPSLNHKRCR  178
                C GCFH*SRTKVGGSKTIRYRP L+H + R
Subject    439  CAGCFH*SRTKVGGSKTIRYRPILHHNKQR  528

Range 2: 438 to 518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 24/27(89%) 0/27(0%) Minus/Minus
Query       88  LWLRLGRYLIVFEPPTFVLD**KHPWQ  168
                LW R+GRYLIVFEPPTFVLD**KHP Q
Subject    438  LW*RIGRYLIVFEPPTFVLD**KHPAQ  518

Range 3: 431 to 517 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 24/29(83%) 0/29(0%) Plus/Plus
Query       81  KAFAKDVFINQERKLGARRRSDTVLVSTI  167
                +AFA+DVFINQERKLGAR+RSDTVL  TI
Subject    431  EAFARDVFINQERKLGARKRSDTVLFFTI  517

Range 4: 433 to 516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 23/28(82%) 0/28(0%) Minus/Minus
Query       83  MVETRTVSDRLRAPNFRS*LMKTSLANA  166
                MV+ RTVSDR RAPNFRS*LMKTS A A
Subject    433  MVKNRTVSDRFRAPNFRS*LMKTSRAKA  516

Range 5: 447 to 518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 21/24(88%) 0/24(0%) Plus/Plus
Query       97  MFSLIKNESWGLEDDQIPS*SQP*  168
                MFSLIKNESWGLE+DQIPS S P*
Subject    447  MFSLIKNESWGLENDQIPSYSSP*  518

Range 6: 446 to 523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 21/26(81%) 0/26(0%) Minus/Minus
Query       96  IVYG*D*DGI*SSSSPQLSFLINENI  173
                + YG +*DGI*S SSPQLSFLINENI
Subject    446  VYYGEE*DGI*SFSSPQLSFLINENI  523