Queries
Nucleotide Sequence (346 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
102.3 | 208.9 | 27% | 1.81e-21 | 31% | NC_009947 | |
99.6 | 162.2 | 23% | 1.217e-20 | 44% | NC_005978 | |
101.0 | 128.1 | 34% | 2.123e-23 | 46% | NC_007539 | |
83.5 | 83.5 | 26% | 8.186e-16 | 40% | NC_033277 | |
65.7 | 65.7 | 23% | 1.961e-10 | 36% | NC_013462 |
Alignments
Amasya cherry disease associated chrysovirus segment 1, complete sequence
Range 1: 2148 to 2423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 43/92(47%) | 0/92(0%) | Minus/Plus |
Query 1 DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 276 D V K++ GL+SGWRGT++LN LN Y CA + Y R+ YIDHGGDDID D V+ VM M+F+A +IKQMI ++E Subject 2148 DGEVHKIETGLYSGWRGTSFLNSVLNSCYTTCARMSYERIHKYDPFVYIDHGGDDIDGGIRNMGDGVKMPVVMEKMQFEAQKIKQMIGIDSE 2423
Range 2: 2115 to 2405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 30/97(31%) | 0/97(0%) | Plus/Minus |
Query 19 HLFYLRCVELH*VHNA*KSYRICKLQKRHIYVISTMVDIFQ*AVRKKSRVNNQCTLYICIVQPTVQPCCTSPT*KQTIIQFEHPVIRFKPHRVHAIC 309 HLF L +ELH +H+ Y I + IY+I+T++DI + + V + T + +Q V+ CTSP * QT + IR + + C Subject 2115 HLFNLLSLELHLLHHHRHLYTITHVPNSSIYIITTVIDIHERIIFVYPFVGHSSTCCVT*IQH*VEK*CTSPP*VQTCFYLVYLTIRIHQNHIPHTC 2405
Range 3: 2147 to 2422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 37/92(40%) | 0/92(0%) | Plus/Minus |
Query 2 SASSAIICFICVASNFIRFITLRNLTESANSRNAISMSSPPWSIYFSELLGKSLE*TTSAHCIYA*FSQQFNHVVPLQPENKPLSSLNTPSS 277 S S IIC I ASN I IT T S S+SSPP SIY + L * AH + F+ + + VPL PE +P+S L T S Subject 2147 SESIPIICLIF*ASNCIFSITTGIFTPSPMFLIPPSISSPP*SIYTNGSYLCILS*DILAHVV*HEFNTELRNDVPLHPEYRPVSILCTSPS 2422
Range 1: 2260 to 2541 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 42/94(45%) | 0/94(0%) | Minus/Plus |
Query 1 KTDDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 282 K D + KLD GL+SGWRGTTW N LN Y+ A + + RL+ + D GGDD+D F + D+ R L+V++ M F+AT+ KQMI +E Subject 2260 KRDGTLVKLDKGLYSGWRGTTWDNTVLNGCYMGVAKLCFVRLYKYDCALFADQGGDDVDQEFAQPEDAYRMLAVLDRMGFEATKSKQMIGRNSE 2541
Penicillium chrysogenum virus segment 1, complete genome
Range 1: 2284 to 2559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 44/92(48%) | 0/92(0%) | Minus/Plus |
Query 1 DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 276 D V K+ GL+SGWRGTTW+N LN+ Y+ AL RLF + Y+DHGGDDID+ E A FL VM+ M F A + KQM +E Subject 2284 DGNVHKIWRGLYSGWRGTTWINTVLNFCYVHIALQNVERLFGVRVVLYVDHGGDDIDLGLSEPAVMPWFLEVMDAMLFKANKWKQMFGTRSE 2559
Isaria javanica chrysovirus 1 isolate IjCV-1 RNA-dependent RNA polymerase (RdRp) gene, complete cds
Range 1: 2323 to 2589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 36/89(40%) | 0/89(0%) | Minus/Plus |
Query 1 VFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 267 V K+ GL+SGWRGTTW+N LN+ Y+ AL R+ + + +DHGGDD+D+ + FL +M+ M F A + KQM +E Subject 2323 VHKIWTGLYSGWRGTTWINSTLNFCYVFIALENLRRITGSEVVLMVDHGGDDLDLMLSQPDVMPLFLEIMDNMLFKANKWKQMFGLRSE 2589
Rosellinia necatrix megabirnavirus 1/W779 segment L1, complete genome
Range 1: 7498 to 7740 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 29/81(36%) | 0/81(0%) | Minus/Plus |
Query 7 GLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADE 249 GL+SGWR T+++NC N AY + +F + Y H GDD + E D++RF+S M L K + KQ++ E Subject 7498 GLWSGWRTTSFINCSFNVAYCESNFDSMHHIFNSDMPLYRVHAGDDFFGTYAEEIDAMRFVSSMPLAKHEVNAQKQLVGGE 7740
Nucleotide Sequence (592 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Isaria javanica chrysovirus 1 isolate IjCV-1 RNA-dependent RNA polymerase (RdRp) gene, complete cds
Range 1: 2911 to 3465 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 61/185(33%) | 0/185(0%) | Plus/Plus |
Query 3 LTEVIPEFIPTSERRIVPGFKSSLDYVKHLELDFNKRGLSLVRAGELAERMAEDNFNFNETADHQKWVEIMNKVYVIKEVRLVIEHRDDMVCFSEMLKADEDALNNPMYGVAAKYSEYWNHIELNGRKLTKDELIGVVTYLMVNPEVLEFKGNLYYRRLLPEFLAYKITYFCKDKINNYAWTMAE 557 L + +P+ + +VP K+S DYV+ L D + L L R ELA ++AED+++ +T D +W E+++ + R VIE +D F L+ + D + AA++ EY ++ NG +TK+EL+ +++ V+ E +EF G++YY+RL+PEF+A + FC+ IN T+ E Subject 2911 LEKPVPQLEEGWYKVVVPDCKASRDYVRVLSRDVEQFSLVLERQEELARKLAEDSYDIEKTLDRVQWRELLSFDCKVLGKRPVIEVMEDQAVFESFLEFEPDEDMATKFNKAARFQEYCGNLSFNGMPITKEELVDLMSDGEVSVEAIEFTGDIYYQRLVPEFIANRAVTFCRAAINGNYLTVKE 3465
Penicillium chrysogenum virus segment 1, complete genome
Range 1: 2881 to 3411 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 60/177(34%) | 0/177(0%) | Plus/Plus |
Query 3 LTEVIPEFIPTSERRIVPGFKSSLDYVKHLELDFNKRGLSLVRAGELAERMAEDNFNFNETADHQKWVEIMNKVYVIKEVRLVIEHRDDMVCFSEMLKADEDALNNPMYGVAAKYSEYWNHIELNGRKLTKDELIGVVTYLMVNPEVLEFKGNLYYRRLLPEFLAYKITYFCKDKIN 533 L E +PE + +VP +K+S DYV L D K L + +LA +++ED+++ ++ DH++W ++N + L +E +D V F L+ + + + +A++Y E+ +++ LNGR +TK+EL+ +++ V E +EF+G++YY RL+PEF+AY+ T FCK+ IN Subject 2881 LEEKVPEINEEWYKVVVPDYKASRDYVNVLARDVEKFSLVIEEREKLARKLSEDSYDIEKSVDHERWKHLLNFRTRVIAKELAVEPMEDSVVFEGFLEYEVEEGTEKKFDLASRYQEFVSYLSLNGRAITKEELLDLMSDGEVCLEAIEFQGDIYYARLVPEFIAYRATMFCKEAIN 3411
Range 1: 3280 to 3369 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 16/30(53%) | 0/30(0%) | Plus/Plus |
Query 432 NPEVLEFKGNLYYRRLLPEFLAYKITYFCK 521 N +VL+FKG++YYRRL+ E +T FCK Subject 3280 NMDVLDFKGDVYYRRLVGEPFGRLVTNFCK 3369
Range 2: 2908 to 3099 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 18/64(28%) | 0/64(0%) | Plus/Plus |
Query 51 VPGFKSSLDYVKHLELDFNKRGLSLVRAGELAERMAEDNFNFNETADHQKWVEIMNKVYVIKEV 242 VPG +++DYV L+ + +S+ + +AE+MAE F+ + + +E V K V Subject 2908 VPGKLAAMDYVAVLDRELRSNNISIEKWEMVAEKMAEGAFDVYKDGAFEVLLEYKGNVVEKKPV 3099