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Queries

Nucleotide Sequence (130 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
13
26
39
52
65
78
91
104
117
130

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
98.9 472.7 52% 3.55e-20 84% AJ306288.1
98.9 510.2 52% 3.55e-20 91% X97704.2
98.9 442.9 32% 3.55e-20 77% KF955619.1
98.9 461.2 52% 3.55e-20 81% KJ161179.1
98.9 431.4 32% 3.55e-20 74% KJ161182.1

Alignments

Lettuce mosaic virus complete genomic RNA, Yuhang isolate

Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.9 bits(213) 0.0 42/42(100%) 0/42(0%) Minus/Plus
Query        1  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  126
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  4120

Range 2: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 35/40(88%) 0/40(0%) Minus/Plus
Query        3  REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK  122
                REVI CTGVY+SSNH*YLRARMMYA RAL RSLT LMRRK
Subject   3999  REVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRK  4118

Range 3: 3992 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 36/43(84%) 0/43(0%) Plus/Minus
Query        1  FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL  129
                FFLLIK VNDL+NAL+AYIILARRY**FEL *TPVH ITSL +
Subject   3992  FFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITSLAI  4120

Range 4: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 34/40(85%) 0/40(0%) Plus/Minus
Query        3  LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS  122
                LSSHQ GQ*S QRS GVHHPRT*ILMI*A I+SCT NHFS
Subject   3999  LSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFS  4118

Range 5: 4000 to 4119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 34/40(85%) 0/40(0%) Minus/Plus
Query        2  EK*LRVQEFIEAQIISIYVRG*CTPSER**DH*PI**EER  121
                EK*L VQE I+AQIISIYVRG*CTP ER* DH*P+**EER
Subject   4000  EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EER  4119

Range 6: 3994 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 28/30(93%) 0/30(0%) Plus/Minus
Query       38  TL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  127
                TL WRTSSSHVDTNDLSFD+LLYTQSLLSL
Subject   3994  TLWWRTSSSHVDTNDLSFDRLLYTQSLLSL  4083

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.9 bits(213) 0.0 42/42(100%) 0/42(0%) Minus/Plus
Query        1  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  126
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  4120

Range 2: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 38/40(95%) 0/40(0%) Minus/Plus
Query        3  REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK  122
                REVIACTGVY+SSNH*YLRARMMYAIRAL RSLTYLMRRK
Subject   3999  REVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRK  4118

Range 3: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 38/40(95%) 0/40(0%) Plus/Minus
Query        3  LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS  122
                LSSHQIGQ*S QRSDGVHHPRT*ILMI*A INSCTRNHFS
Subject   3999  LSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHFS  4118

Range 4: 3992 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 39/43(91%) 0/43(0%) Plus/Minus
Query        1  FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL  129
                FFLLIK*VNDL+NALMAYIILARRY**FEL *TPVHAITSL +
Subject   3992  FFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITSLAV  4120

Range 5: 4000 to 4119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 38/40(95%) 0/40(0%) Minus/Plus
Query        2  EK*LRVQEFIEAQIISIYVRG*CTPSER**DH*PI**EER  121
                EK*LRVQEFI+AQIISIYVRG*CTPSER* DH*PI**EER
Subject   4000  EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EER  4119

Range 6: 3994 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 30/30(100%) 0/30(0%) Plus/Minus
Query       38  TL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  127
                TL*WRTSSSHVDTNDLSFDKLLYTQSLLSL
Subject   3994  TL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  4083

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.9 bits(213) 0.0 42/42(100%) 0/42(0%) Minus/Plus
Query        1  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  126
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  4120

Range 2: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 32/40(80%) 0/40(0%) Minus/Plus
Query        3  REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK  122
                R VI CTGVY+SSNH*YL ARMMYA RAL +SLT LMRRK
Subject   3999  RGVIVCTGVYQSSNH*YLHARMMYATRALTKSLTCLMRRK  4118

Range 3: 3992 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 33/43(77%) 0/43(0%) Plus/Minus
Query        1  FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL  129
                FFLLIK VND +NAL+AYIILA RY**FEL *TPVH IT L +
Subject   3992  FFLLIKQVNDFVNALVAYIILACRY**FEL**TPVHTITPLAV  4120

Range 4: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 31/40(78%) 0/40(0%) Plus/Minus
Query        3  LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS  122
                LSSHQ GQ*  QRS GVHHPR *ILMI*A I+SCT NH S
Subject   3999  LSSHQTGQ*FRQRSGGVHHPRM*ILMI*ALIDSCTHNHSS  4118

Range 5: 3994 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 28/30(93%) 0/30(0%) Plus/Minus
Query       38  TL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  127
                TL WRTSSSHVDTNDLSFD+LLYTQSLLSL
Subject   3994  TLWWRTSSSHVDTNDLSFDRLLYTQSLLSL  4083

Range 6: 4000 to 4119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 31/40(78%) 0/40(0%) Minus/Plus
Query        2  EK*LRVQEFIEAQIISIYVRG*CTPSER**DH*PI**EER  121
                E+*L VQE I+AQIISIY+RG*CTP ER* +H*P+**EER
Subject   4000  EE*LCVQESIKAQIISIYMRG*CTPPER*RNH*PV**EER  4119

Lettuce mosaic virus isolate CL394, complete genome

Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.9 bits(213) 0.0 42/42(100%) 0/42(0%) Minus/Plus
Query        1  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  126
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  4120

Range 2: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 34/40(85%) 0/40(0%) Minus/Plus
Query        3  REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK  122
                R VI CTGVY+SSNH*YLRARMMYA RAL RSLT LMRRK
Subject   3999  RGVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRK  4118

Range 3: 3992 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 35/43(81%) 0/43(0%) Plus/Minus
Query        1  FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL  129
                FFLLIK VNDL+NAL+AYIILARRY**FEL *TPVH IT L +
Subject   3992  FFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITPLAV  4120

Range 4: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 33/40(82%) 0/40(0%) Plus/Minus
Query        3  LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS  122
                LSSHQ GQ*S QRS GVHHPRT*ILMI*A I+SCT NH S
Subject   3999  LSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHSS  4118

Range 5: 4000 to 4119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 33/40(82%) 0/40(0%) Minus/Plus
Query        2  EK*LRVQEFIEAQIISIYVRG*CTPSER**DH*PI**EER  121
                E+*L VQE I+AQIISIYVRG*CTP ER* DH*P+**EER
Subject   4000  EE*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EER  4119

Range 6: 3994 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 28/30(93%) 0/30(0%) Plus/Minus
Query       38  TL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  127
                TL WRTSSSHVDTNDLSFD+LLYTQSLLSL
Subject   3994  TLWWRTSSSHVDTNDLSFDRLLYTQSLLSL  4083

Lettuce mosaic virus isolate CL464, complete genome

Sequence ID: KJ161182.1 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.9 bits(213) 0.0 42/42(100%) 0/42(0%) Minus/Plus
Query        1  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  126
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKE  4120

Range 2: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 31/40(78%) 0/40(0%) Plus/Minus
Query        3  LSSHQIGQ*SHQRSDGVHHPRT*ILMI*ASINSCTRNHFS  122
                LSSH+  Q*S QRS G HHPRT* LMI*A INSCT NHFS
Subject   3999  LSSHRTSQ*SRQRSGGAHHPRT*KLMI*ALINSCTHNHFS  4118

Range 3: 3999 to 4118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 31/40(78%) 0/40(0%) Minus/Plus
Query        3  REVIACTGVYRSSNH*YLRARMMYAIRALMRSLTYLMRRK  122
                REVI CTGVY+S NH*+LRARMM A RAL RSLT  MRRK
Subject   3999  REVIVCTGVYQSLNH*FLRARMMCATRALTRSLTCSMRRK  4118

Range 4: 3992 to 4120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 32/43(74%) 0/43(0%) Plus/Minus
Query        1  FFLLIK*VNDLINALMAYIILARRY**FELR*TPVHAITSLTL  129
                FFLLI+ VNDL+NAL+A+IILARR **F+L *TPVH ITSL +
Subject   3992  FFLLIEQVNDLVNALVAHIILARRN**FKL**TPVHTITSLAV  4120

Range 5: 3994 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 28/30(93%) 0/30(0%) Plus/Minus
Query       38  TL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  127
                TL WRTSSSHV+TNDLSFDKLLYTQSLLSL
Subject   3994  TLWWRTSSSHVETNDLSFDKLLYTQSLLSL  4083

Range 6: 4000 to 4119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 30/40(75%) 0/40(0%) Minus/Plus
Query        2  EK*LRVQEFIEAQIISIYVRG*CTPSER**DH*PI**EER  121
                EK*L VQEFI+A IIS YVRG*C P ER* DH* + *EER
Subject   4000  EK*LCVQEFIKA*IISFYVRG*CAPPER*RDH*LVR*EER  4119

Nucleotide Sequence (347 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
347

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
282.4 1397.4 28% 1.521e-74 99% X97704.2
278.7 1377.2 28% 1.93e-73 91% AJ515301.1
274.6 1373.5 28% 3.365e-72 97% KJ161179.1
274.6 1373.5 28% 3.365e-72 97% KJ161209.1
272.8 1365.8 28% 1.199e-71 96% KJ161268.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 8

Range 1: 6253 to 6597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
282.4 bits(610) 0.0 114/115(99%) 0/115(0%) Plus/Plus
Query        3  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL  347
                DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSCQESYHSSTRDRHDPSQLL
Subject   6253  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSCQESYHSSTRDRHDPSQLL  6597

Range 2: 6252 to 6596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
274.2 bits(592) 0.0 115/115(100%) 0/115(0%) Plus/Plus
Query        2  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL  346
                RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL
Subject   6252  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL  6596

Range 3: 6251 to 6595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 114/115(99%) 0/115(0%) Plus/Plus
Query        1  ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS  345
                ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS
Subject   6251  ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS  6595

Range 4: 6251 to 6595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 115/115(100%) 0/115(0%) Minus/Minus
Query        1  RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR  345
                RVVRGHVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR
Subject   6251  RVVRGHVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR  6595

Range 5: 6342 to 6596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.8 bits(421) 0.0 84/85(99%) 0/85(0%) Minus/Minus
Query       92  KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  346
                KSCEGSCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ
Subject   6342  KSCEGSCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  6596

Range 6: 6252 to 6284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/11(100%) 0/11(0%) Minus/Minus
Query        2  YTQLQNSVPSS  34
                YTQLQNSVPSS
Subject   6252  YTQLQNSVPSS  6284

Range 7: 6253 to 6453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 67/67(100%) 0/67(0%) Minus/Minus
Query        3  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV  203
                WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV
Subject   6253  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV  6453

Range 8: 6514 to 6597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/28(100%) 0/28(0%) Minus/Minus
Query      264  QEL*GVMSISSAAVVRFLTR*ALIPFRM  347
                QEL*GVMSISSAAVVRFLTR*ALIPFRM
Subject   6514  QEL*GVMSISSAAVVRFLTR*ALIPFRM  6597

Lettuce mosaic virus partial gene for polyprotein, VPg protein, genomic RNA, strain Tn2

Sequence ID: AJ515301.1 Length: 559 Number of Matches: 8

Range 1: 67 to 411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.7 bits(602) 0.0 113/115(98%) 0/115(0%) Plus/Plus
Query        3  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL  347
                DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSCQESYHSSTRDRHD SQLL
Subject     67  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSCQESYHSSTRDRHDSSQLL  411

Range 2: 66 to 410 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.8 bits(576) 0.0 113/115(98%) 0/115(0%) Plus/Plus
Query        2  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL  346
                RRWN ILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T* LTTL
Subject     66  RRWNIILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*LLTTL  410

Range 3: 65 to 409 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 114/115(99%) 0/115(0%) Plus/Plus
Query        1  ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS  345
                ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS
Subject     65  ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS  409

Range 4: 65 to 409 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 113/115(98%) 0/115(0%) Minus/Minus
Query        1  RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR  345
                RVVR HVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKI+FHRR
Subject     65  RVVRSHVYLECCCGKILDKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIMFHRR  409

Range 5: 156 to 410 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.1 bits(413) 0.0 83/85(98%) 0/85(0%) Minus/Minus
Query       92  KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  346
                KSCE SCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ
Subject    156  KSCEESCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  410

Range 6: 66 to 98 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 10/11(91%) 0/11(0%) Minus/Minus
Query        2  YTQLQNSVPSS  34
                YTQLQN+VPSS
Subject     66  YTQLQNNVPSS  98

Range 7: 67 to 267 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 67/67(100%) 0/67(0%) Minus/Minus
Query        3  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV  203
                WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV
Subject     67  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV  267

Range 8: 328 to 411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/28(100%) 0/28(0%) Minus/Minus
Query      264  QEL*GVMSISSAAVVRFLTR*ALIPFRM  347
                QEL*GVMSISSAAVVRFLTR*ALIPFRM
Subject    328  QEL*GVMSISSAAVVRFLTR*ALIPFRM  411

Lettuce mosaic virus isolate CL394, complete genome

Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 8

Range 1: 6253 to 6597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
274.6 bits(593) 0.0 112/115(97%) 0/115(0%) Plus/Plus
Query        3  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL  347
                DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSC ESYHSSTRDRHD SQLL
Subject   6253  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSC*ESYHSSTRDRHDSSQLL  6597

Range 2: 6252 to 6596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.8 bits(576) 0.0 113/115(98%) 0/115(0%) Plus/Plus
Query        2  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL  346
                RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELIL RILPQQHSR*T* LTTL
Subject   6252  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILLRILPQQHSR*T*LLTTL  6596

Range 3: 6251 to 6595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 114/115(99%) 0/115(0%) Plus/Plus
Query        1  ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS  345
                ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS
Subject   6251  ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS  6595

Range 4: 6251 to 6595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.4 bits(431) 0.0 113/115(98%) 0/115(0%) Minus/Minus
Query        1  RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR  345
                RVVR HVYLECCCGKIL+KISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR
Subject   6251  RVVRSHVYLECCCGKILNKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR  6595

Range 5: 6342 to 6596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.1 bits(413) 0.0 83/85(98%) 0/85(0%) Minus/Minus
Query       92  KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  346
                KSCE SCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ
Subject   6342  KSCEESCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  6596

Range 6: 6252 to 6284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/11(100%) 0/11(0%) Minus/Minus
Query        2  YTQLQNSVPSS  34
                YTQLQNSVPSS
Subject   6252  YTQLQNSVPSS  6284

Range 7: 6253 to 6453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 67/67(100%) 0/67(0%) Minus/Minus
Query        3  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV  203
                WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV
Subject   6253  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV  6453

Range 8: 6514 to 6597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/28(100%) 0/28(0%) Minus/Minus
Query      264  QEL*GVMSISSAAVVRFLTR*ALIPFRM  347
                QEL*GVMSISSAAVVRFLTR*ALIPFRM
Subject   6514  QEL*GVMSISSAAVVRFLTR*ALIPFRM  6597

Lettuce mosaic virus isolate CL229 polyprotein gene, partial cds

Sequence ID: KJ161209.1 Length: 1141 Number of Matches: 8

Range 1: 475 to 819 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
274.6 bits(593) 0.0 112/115(97%) 0/115(0%) Plus/Plus
Query        3  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL  347
                DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSC ESYHSSTRDRHD SQLL
Subject    475  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSC*ESYHSSTRDRHDSSQLL  819

Range 2: 474 to 818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.8 bits(576) 0.0 113/115(98%) 0/115(0%) Plus/Plus
Query        2  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL  346
                RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELIL RILPQQHSR*T* LTTL
Subject    474  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILLRILPQQHSR*T*LLTTL  818

Range 3: 473 to 817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 114/115(99%) 0/115(0%) Plus/Plus
Query        1  ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS  345
                ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS
Subject    473  ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS  817

Range 4: 473 to 817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.4 bits(431) 0.0 113/115(98%) 0/115(0%) Minus/Minus
Query        1  RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR  345
                RVVR HVYLECCCGKIL+KISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR
Subject    473  RVVRSHVYLECCCGKILNKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR  817

Range 5: 564 to 818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.1 bits(413) 0.0 83/85(98%) 0/85(0%) Minus/Minus
Query       92  KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  346
                KSCE SCLSRVLLW*DS*QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ
Subject    564  KSCEESCLSRVLLW*DS*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  818

Range 6: 474 to 506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/11(100%) 0/11(0%) Minus/Minus
Query        2  YTQLQNSVPSS  34
                YTQLQNSVPSS
Subject    474  YTQLQNSVPSS  506

Range 7: 475 to 675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 67/67(100%) 0/67(0%) Minus/Minus
Query        3  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV  203
                WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV
Subject    475  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV  675

Range 8: 736 to 819 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/28(100%) 0/28(0%) Minus/Minus
Query      264  QEL*GVMSISSAAVVRFLTR*ALIPFRM  347
                QEL*GVMSISSAAVVRFLTR*ALIPFRM
Subject    736  QEL*GVMSISSAAVVRFLTR*ALIPFRM  819

Lettuce mosaic virus isolate Tn376 polyprotein gene, partial cds

Sequence ID: KJ161268.1 Length: 1042 Number of Matches: 8

Range 1: 450 to 794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
272.8 bits(589) 0.0 111/115(97%) 0/115(0%) Plus/Plus
Query        3  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGVHAKRN*SLSCQESYHSSTRDRHDPSQLL  347
                DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIG HAKRN*SLSC +SYHSSTRDRHD SQLL
Subject    450  DDGTLFWSCVYGEREEIRKNERNGNEKSKICKYVWIQPRRFLIHPISGPAHRENNGRTSIF*HKSRPRCL**GKTQTPIRRRNRIGAHAKRN*SLSC*KSYHSSTRDRHDSSQLL  794

Range 2: 449 to 793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 112/115(97%) 0/115(0%) Plus/Plus
Query        2  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILSRILPQQHSR*T*PLTTL  346
                RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELIL +ILPQQHSR*T* LTTL
Subject    449  RRWNTILELRIRRKGRNPEKRKEWERKIEDL*ICMDTTQKISHSSDFWTRSQGKQWTNKYFLT*VSSKMPLVRKDSNSYPKEKSNRSTCETELELILLKILPQQHSR*T*LLTTL  793

Range 3: 448 to 792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 114/115(99%) 0/115(0%) Plus/Plus
Query        1  ATMEHYFGAAYTEXXXXXXXXXXXXXXNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEYMRNGIRAYLVKNLTTAALEIDMTPHNS  345
                ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESE+MRNGIRAYLVKNLTTAALEIDMTPHNS
Subject    448  ATMEHYFGAAYTEKGKKSGKTKGMGTKNRRFVNMYGYNPEDFSFIRFLDPLTGKTMDEQVFSDISLVQDAFSKERLKLLSEGEIESEHMRNGIRAYLVKNLTTAALEIDMTPHNS  792

Range 4: 448 to 792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.6 bits(427) 0.0 112/115(97%) 0/115(0%) Minus/Minus
Query        1  RVVRGHVYLECCCGKILDKISSNSVSHVLRXXXXXXXXXXXFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKXXXXXXXXXXXXXFLPFLRIRSSKIVFHRR  345
                RVVR HVYLECCCGKI +KISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR
Subject    448  RVVRSHVYLECCCGKIFNKISSNSVSHVLRFDFSFG*EFESFLTKGILDETYVRKYLFVHCFPCERVQKSDE*EIFWVVSIHIYKSSIFRSHSFRFSGFLPFLRIRSSKIVFHRR  792

Range 5: 539 to 793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.4 bits(407) 0.0 82/85(96%) 0/85(0%) Minus/Minus
Query       92  KSCEGSCLSRVLLW*DS*QDKL*FRFACTPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  346
                KSCE SCLSRVLLW*D *QDKL*FRFAC PIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ
Subject    539  KSCEESCLSRVLLW*DF*QDKL*FRFACAPIRFLLRIGV*VFPY*RHLGRDLCQKILVRPLFSL*AGPEIG*MRNLLGCIHTYLQ  793

Range 6: 449 to 481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/11(100%) 0/11(0%) Minus/Minus
Query        2  YTQLQNSVPSS  34
                YTQLQNSVPSS
Subject    449  YTQLQNSVPSS  481

Range 7: 450 to 650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 67/67(100%) 0/67(0%) Minus/Minus
Query        3  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRXXXXXXXXXXXXXXFSVYAAPK*CSIV  203
                WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV
Subject    450  WTRLMSENTCSSIVFPVSGSRNRMNEKSSGLYPYIFTNLRFFVPIPFVFPDFFPFSVYAAPK*CSIV  650

Range 8: 711 to 794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/28(100%) 0/28(0%) Minus/Minus
Query      264  QEL*GVMSISSAAVVRFLTR*ALIPFRM  347
                QEL*GVMSISSAAVVRFLTR*ALIPFRM
Subject    711  QEL*GVMSISSAAVVRFLTR*ALIPFRM  794

Nucleotide Sequence (152 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
16
32
48
64
80
96
112
128
144
152

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
118.5 571.9 18% 5.124e-26 88% AJ515299.1
118.5 610.0 18% 5.124e-26 96% X97704.2
118.5 544.9 18% 5.124e-26 82% KF955619.1
118.5 524.7 18% 5.124e-26 78% KJ161174.1
118.5 546.3 18% 5.124e-26 82% KJ161176.1

Alignments

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 6

Range 1: 1143 to 1292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.5 bits(255) 0.0 50/50(100%) 0/50(0%) Plus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  151
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE
Subject   1143  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  1292

Range 2: 1143 to 1292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 45/50(90%) 0/50(0%) Minus/Minus
Query        2  FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS  151
                FFSFNLEIYSFFLLIK +NDL+NAL+AYIILARRY**FEL**TPVH ITS
Subject   1143  FFSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITS  1292

Range 3: 1144 to 1293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 45/50(90%) 0/50(0%) Plus/Plus
Query        3  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN  152
                EVI CTGVYQSSNH*YLRARMMYA RAL RSL  LMRRKKL*ISRLKEKN
Subject   1144  EVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEKN  1293

Range 4: 1144 to 1293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 44/50(88%) 0/50(0%) Minus/Minus
Query        3  VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  152
                VLFLQSRNL*FLSSHQ  Q*S QRS GVHHPRT*ILMI*ALI+SCT NHF
Subject   1144  VLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHF  1293

Range 5: 1142 to 1291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 44/50(88%) 0/50(0%) Plus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR  150
                EK*L VQE IKAQIISIYVRG*CTP ER* DH* +**EERNYRFRD*RKR
Subject   1142  EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKR  1291

Range 6: 1142 to 1225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Minus/Minus
Query        1  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  84
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   1142  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  1225

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 4001 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.5 bits(255) 0.0 50/50(100%) 0/50(0%) Plus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  151
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4002 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 48/50(96%) 0/50(0%) Minus/Minus
Query        3  VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  152
                VLFLQSRNL*FLSSHQI Q*S QRSDGVHHPRT*ILMI*ALINSCTRNHF
Subject   4002  VLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHF  4151

Range 3: 4002 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 48/50(96%) 0/50(0%) Plus/Plus
Query        3  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN  152
                EVIACTGVYQSSNH*YLRARMMYAIRAL RSL YLMRRKKL*ISRLKEKN
Subject   4002  EVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEKN  4151

Range 4: 4001 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 48/50(96%) 0/50(0%) Minus/Minus
Query        2  FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS  151
                FFSFNLEIYSFFLLIK*+NDL+NALMAYIILARRY**FEL**TPVHAITS
Subject   4001  FFSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITS  4150

Range 5: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 48/50(96%) 0/50(0%) Plus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR  150
                EK*LRVQEFIKAQIISIYVRG*CTPSER* DH* I**EERNYRFRD*RKR
Subject   4000  EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKR  4149

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 28/28(100%) 0/28(0%) Minus/Minus
Query        1  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  84
                TL*WRTSSSHVDTNDLSFDKLLYTQSLL
Subject   4000  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  4083

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6

Range 1: 4001 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.5 bits(255) 0.0 50/50(100%) 0/50(0%) Plus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  151
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4005 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 42/49(86%) 0/49(0%) Plus/Plus
Query        6  VIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN  152
                VI CTGVYQSSNH*YL ARMMYA RAL +SL  LMRRKKL*ISRLKEKN
Subject   4005  VIVCTGVYQSSNH*YLHARMMYATRALTKSLTCLMRRKKL*ISRLKEKN  4151

Range 3: 4004 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 42/49(86%) 0/49(0%) Minus/Minus
Query        5  FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAIT  151
                FFSFNLEIYSFFLLIK +ND +NAL+AYIILA RY**FEL**TPVH IT
Subject   4004  FFSFNLEIYSFFLLIKQVNDFVNALVAYIILACRY**FEL**TPVHTIT  4150

Range 4: 4005 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 41/49(84%) 0/49(0%) Minus/Minus
Query        6  VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH  152
                VLFLQSRNL*FLSSHQ  Q*  QRS GVHHPR *ILMI*ALI+SCT NH
Subject   4005  VLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPRM*ILMI*ALIDSCTHNH  4151

Range 5: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 41/50(82%) 0/50(0%) Plus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR  150
                E+*L VQE IKAQIISIY+RG*CTP ER* +H* +**EERNYRFRD*RKR
Subject   4000  EE*LCVQESIKAQIISIYMRG*CTPPER*RNH*PV**EERNYRFRD*RKR  4149

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Minus/Minus
Query        1  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  84
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  4083

Lettuce mosaic virus isolate Br6, complete genome

Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 6

Range 1: 4001 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.5 bits(255) 0.0 50/50(100%) 0/50(0%) Plus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  151
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4001 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 41/50(82%) 0/50(0%) Minus/Minus
Query        2  FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS  151
                FFSFNLEIY FFLLI+ IN+LINAL+AYI+LARRY**F+L**TP+H ITS
Subject   4001  FFSFNLEIYRFFLLIEQINNLINALVAYIVLARRY**FKL**TPIHTITS  4150

Range 3: 4002 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 41/50(82%) 0/50(0%) Minus/Minus
Query        3  VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  152
                VLFLQSRNL FLSSH+ DQ*SHQR  GVH PRT*ILMI*ALI+S T NHF
Subject   4002  VLFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHF  4151

Range 4: 4002 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 40/50(80%) 0/50(0%) Plus/Plus
Query        3  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN  152
                EVI C GVYQS NH*YLRAR MYA +ALMR LI  MRRKK *ISRLKEKN
Subject   4002  EVIVCIGVYQSLNH*YLRARTMYATKALMRLLICSMRRKKR*ISRLKEKN  4151

Range 5: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 39/50(78%) 0/50(0%) Plus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR  150
                EK*L V E IKA IISIYVRG CTP +R**D+*S+ *EERN RFRD*RKR
Subject   4000  EK*LCV*ESIKA*IISIYVRGRCTPPKR**DY*SVR*EERNDRFRD*RKR  4149

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Minus/Minus
Query        1  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  84
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  4083

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6

Range 1: 4001 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.5 bits(255) 0.0 50/50(100%) 0/50(0%) Plus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  151
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4002 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 43/50(86%) 0/50(0%) Minus/Minus
Query        3  VLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  152
                VLFLQSRNL FLSSH+ DQ*SHQR  GVHHPRT*ILMI*ALI+SCT NHF
Subject   4002  VLFLQSRNLSFLSSHRTDQ*SHQRFGGVHHPRT*ILMI*ALIDSCTHNHF  4151

Range 3: 4001 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 43/50(86%) 0/50(0%) Minus/Minus
Query        2  FFSFNLEIYSFFLLIK*INDLINALMAYIILARRY**FEL**TPVHAITS  151
                FFSFNLEIY FFLLI+ IN+LINAL+AYIILARRY**F+L**TPVH ITS
Subject   4001  FFSFNLEIYRFFLLIEQINNLINALVAYIILARRY**FKL**TPVHTITS  4150

Range 4: 4002 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 42/50(84%) 0/50(0%) Plus/Plus
Query        3  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKKL*ISRLKEKN  152
                EVI CTGVYQS NH*YLRARMMYA +ALMR LI  MRRKK *ISRLKEKN
Subject   4002  EVIVCTGVYQSLNH*YLRARMMYATKALMRLLICSMRRKKR*ISRLKEKN  4151

Range 5: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 41/50(82%) 0/50(0%) Plus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERNYRFRD*RKR  150
                EK*L VQE IKA IISIYVRG*CTP +R**D+*S+ *EERN RFRD*RKR
Subject   4000  EK*LCVQESIKA*IISIYVRG*CTPPKR**DY*SVR*EERNDRFRD*RKR  4149

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Minus/Minus
Query        1  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  84
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  4083

Nucleotide Sequence (287 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
29
58
87
116
145
174
203
232
261
287

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
227.4 1108.8 40% 3.741e-58 99% AJ515299.1
227.4 1108.8 40% 3.741e-58 99% AJ306288.1
227.4 1108.8 40% 3.741e-58 99% X97704.2
227.4 1100.1 40% 3.741e-58 97% KF955619.1
227.4 1035.1 40% 3.741e-58 88% KJ161176.1

Alignments

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 9

Range 1: 690 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 95/95(100%) 0/95(0%) Plus/Plus
Query        2  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  286
                VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ
Subject    690  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  974

Range 2: 690 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 94/95(99%) 0/95(0%) Minus/Minus
Query        2  LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  286
                LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY
Subject    690  LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  974

Range 3: 689 to 862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 58/58(100%) 0/58(0%) Minus/Minus
Query        1  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  174
                LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT
Subject    689  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  862

Range 4: 913 to 975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 21/21(100%) 0/21(0%) Minus/Minus
Query      225  FVWHQRAFRGFRNKCYCRCVC  287
                FVWHQRAFRGFRNKCYCRCVC
Subject    913  FVWHQRAFRGFRNKCYCRCVC  975

Range 5: 691 to 975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 94/95(99%) 0/95(0%) Plus/Plus
Query        3  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK  287
                *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK
Subject    691  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK  975

Range 6: 689 to 871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 61/61(100%) 0/61(0%) Plus/Plus
Query        1  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  183
                SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE
Subject    689  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  871

Range 7: 941 to 973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 11/11(100%) 0/11(0%) Plus/Plus
Query      253  RNPRKAR*CQT  285
                RNPRKAR*CQT
Subject    941  RNPRKAR*CQT  973

Range 8: 760 to 858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/33(100%) 0/33(0%) Minus/Minus
Query       72  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  170
                TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS
Subject    760  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  858

Range 9: 938 to 973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Minus
Query      250  CLASACFPWIS*  285
                CLASACFPWIS*
Subject    938  CLASACFPWIS*  973

Lettuce mosaic virus complete genomic RNA, Yuhang isolate

Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 9

Range 1: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 95/95(100%) 0/95(0%) Plus/Plus
Query        2  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  286
                VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ
Subject   3548  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  3832

Range 2: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 94/95(99%) 0/95(0%) Minus/Minus
Query        2  LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  286
                LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY
Subject   3548  LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  3832

Range 3: 3547 to 3720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 58/58(100%) 0/58(0%) Minus/Minus
Query        1  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  174
                LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT
Subject   3547  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  3720

Range 4: 3771 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 21/21(100%) 0/21(0%) Minus/Minus
Query      225  FVWHQRAFRGFRNKCYCRCVC  287
                FVWHQRAFRGFRNKCYCRCVC
Subject   3771  FVWHQRAFRGFRNKCYCRCVC  3833

Range 5: 3549 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 94/95(99%) 0/95(0%) Plus/Plus
Query        3  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK  287
                *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK
Subject   3549  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK  3833

Range 6: 3547 to 3729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 61/61(100%) 0/61(0%) Plus/Plus
Query        1  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  183
                SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE
Subject   3547  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  3729

Range 7: 3799 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 11/11(100%) 0/11(0%) Plus/Plus
Query      253  RNPRKAR*CQT  285
                RNPRKAR*CQT
Subject   3799  RNPRKAR*CQT  3831

Range 8: 3618 to 3716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/33(100%) 0/33(0%) Minus/Minus
Query       72  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  170
                TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS
Subject   3618  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  3716

Range 9: 3796 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Minus
Query      250  CLASACFPWIS*  285
                CLASACFPWIS*
Subject   3796  CLASACFPWIS*  3831

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 9

Range 1: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 95/95(100%) 0/95(0%) Plus/Plus
Query        2  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  286
                VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ
Subject   3548  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  3832

Range 2: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 94/95(99%) 0/95(0%) Minus/Minus
Query        2  LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  286
                LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY
Subject   3548  LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  3832

Range 3: 3547 to 3720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 58/58(100%) 0/58(0%) Minus/Minus
Query        1  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  174
                LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT
Subject   3547  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  3720

Range 4: 3771 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 21/21(100%) 0/21(0%) Minus/Minus
Query      225  FVWHQRAFRGFRNKCYCRCVC  287
                FVWHQRAFRGFRNKCYCRCVC
Subject   3771  FVWHQRAFRGFRNKCYCRCVC  3833

Range 5: 3549 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 94/95(99%) 0/95(0%) Plus/Plus
Query        3  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK  287
                *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK
Subject   3549  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK  3833

Range 6: 3547 to 3729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 61/61(100%) 0/61(0%) Plus/Plus
Query        1  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  183
                SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE
Subject   3547  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  3729

Range 7: 3799 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 11/11(100%) 0/11(0%) Plus/Plus
Query      253  RNPRKAR*CQT  285
                RNPRKAR*CQT
Subject   3799  RNPRKAR*CQT  3831

Range 8: 3618 to 3716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/33(100%) 0/33(0%) Minus/Minus
Query       72  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  170
                TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS
Subject   3618  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  3716

Range 9: 3796 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Minus
Query      250  CLASACFPWIS*  285
                CLASACFPWIS*
Subject   3796  CLASACFPWIS*  3831

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 9

Range 1: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 95/95(100%) 0/95(0%) Plus/Plus
Query        2  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  286
                VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ
Subject   3548  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  3832

Range 2: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 94/95(99%) 0/95(0%) Minus/Minus
Query        2  LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  286
                LFGISVLSVDFVISAIVGAYALT FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY
Subject   3548  LFGISVLSVDFVISAIVGAYALT*FLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  3832

Range 3: 3547 to 3720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 57/58(98%) 0/58(0%) Minus/Minus
Query        1  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  174
                LNWPV+FRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT
Subject   3547  LNWPVKFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  3720

Range 4: 3771 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 21/21(100%) 0/21(0%) Minus/Minus
Query      225  FVWHQRAFRGFRNKCYCRCVC  287
                FVWHQRAFRGFRNKCYCRCVC
Subject   3771  FVWHQRAFRGFRNKCYCRCVC  3833

Range 5: 3549 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 94/95(99%) 0/95(0%) Plus/Plus
Query        3  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK  287
                *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRN VSAYAPTIALITKSTESTLMPNK
Subject   3549  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKR*SIKRRWQRRRNYVSAYAPTIALITKSTESTLMPNK  3833

Range 6: 3547 to 3729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 60/61(98%) 0/61(0%) Plus/Plus
Query        1  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  183
                SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPE DWPV*RDE
Subject   3547  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPELDWPV*RDE  3729

Range 7: 3799 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 11/11(100%) 0/11(0%) Plus/Plus
Query      253  RNPRKAR*CQT  285
                RNPRKAR*CQT
Subject   3799  RNPRKAR*CQT  3831

Range 8: 3618 to 3716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 32/33(97%) 0/33(0%) Minus/Minus
Query       72  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  170
                TGQS SGMLRLAISVLGGEFQRSICSLVLVSCS
Subject   3618  TGQSSSGMLRLAISVLGGEFQRSICSLVLVSCS  3716

Range 9: 3796 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Minus
Query      250  CLASACFPWIS*  285
                CLASACFPWIS*
Subject   3796  CLASACFPWIS*  3831

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 9

Range 1: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 95/95(100%) 0/95(0%) Plus/Plus
Query        2  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  286
                VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ
Subject   3548  VKRVRDKWVGVQVQGVKWLAKSVHYMIPELTNILNVGTLLLTLISLGVAFRNLTGQFKEMKHKETLAKEEELRKRIRTYNSTYYEIHGKHADAKQ  3832

Range 2: 3548 to 3832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 85/95(89%) 0/95(0%) Minus/Minus
Query        2  LFGISVLSVDFVISAIVGAYALTQFLLLCQRLFMLHLFKLASQVPECYA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFYALHLHSDPLVSNSLY  286
                LFG+SVLSVDFVISAI+GAYALT FLLLCQ LF+LHLF+LASQ+P+C+A*RYQC*EESSNVQYVR*FWYHVVH*FS*PF+ALHLHSDPLVSNSLY
Subject   3548  LFGVSVLSVDFVISAIIGAYALT*FLLLCQCLFVLHLFELASQIPKCHA*RYQC*EESSNVQYVR*FWYHVVH*FS*PFHALHLHSDPLVSNSLY  3832

Range 3: 3547 to 3720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 57/58(98%) 0/58(0%) Minus/Minus
Query        1  LNWPVRFRNATPSDISVRRRVPTFNMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  174
                LNWPVRFRNATPSDISVRRRVPTF+MFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT
Subject   3547  LNWPVRFRNATPSDISVRRRVPTFSMFVSSGIM*CTDLANHFTPCTCTPTHLSLTLFT  3720

Range 4: 3771 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 19/21(90%) 0/21(0%) Minus/Minus
Query      225  FVWHQRAFRGFRNKCYCRCVC  287
                FVW QRAFRGFRNKCY RCVC
Subject   3771  FVWRQRAFRGFRNKCYYRCVC  3833

Range 5: 3549 to 3833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 86/95(91%) 0/95(0%) Plus/Plus
Query        3  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A*HSGT*LASLKXXXXXXXXXXXXNCVSAYAPTIALITKSTESTLMPNK  287
                *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*A H G *LAS KR*S KR WQRRRN VSAYAP IALITKSTESTL PNK
Subject   3549  *RELETSGSECKCKA*NG*LNQCTT*YQN*RTY*TLELSS*H*YR*AWHFGI*LASSKR*STKRHWQRRRNYVSAYAPIIALITKSTESTLTPNK  3833

Range 6: 3547 to 3729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 55/61(90%) 0/61(0%) Plus/Plus
Query        1  SKES*RQVGRSASARRKMVS*ISALHDTRTNEHIERWNSPPNTDIARRSIPEPDWPV*RDE  183
                SKES*RQVGRSASARR+MVS*ISALHDTRTNEH ERWNSPPNTDIARR I E DWPV RDE
Subject   3547  SKES*RQVGRSASARREMVS*ISALHDTRTNEHTERWNSPPNTDIARRGISESDWPVQRDE  3729

Range 7: 3799 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 10/11(91%) 0/11(0%) Plus/Plus
Query      253  RNPRKAR*CQT  285
                RNPRKAR* QT
Subject   3799  RNPRKAR*RQT  3831

Range 8: 3618 to 3716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 29/33(88%) 0/33(0%) Minus/Minus
Query       72  TGQSGSGMLRLAISVLGGEFQRSICSLVLVSCS  170
                TGQS S M RLAISVLGGEFQRS+CSLVLVSCS
Subject   3618  TGQSDSEMPRLAISVLGGEFQRSVCSLVLVSCS  3716

Range 9: 3796 to 3831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Minus
Query      250  CLASACFPWIS*  285
                CLASACFPWIS*
Subject   3796  CLASACFPWIS*  3831

Nucleotide Sequence (120 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
120

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
90.4 430.1 33% 1.295e-17 95% X97704.2
87.7 415.9 33% 8.707e-17 90% AJ515299.1
87.7 415.9 33% 8.707e-17 90% KJ161179.1
87.7 415.9 33% 8.707e-17 90% KJ161186.1
87.2 407.6 33% 1.196e-16 87% KF955619.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 5

Range 1: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 38/40(95%) 0/40(0%) Minus/Minus
Query        1  NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR  120
                NPPREKSKVLFLQSRNL*FLSSHQIGQ*S QRS+GVHHPR
Subject   4056  NPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPR  4175

Range 2: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        3  EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD  119
                EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D
Subject   4058  EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD  4174

Range 3: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 37/39(95%) 0/39(0%) Minus/Minus
Query        3  IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL  119
                I HARRVKFFSFNLEIYSFFLLIK*VNDL+NALMAYIIL
Subject   4058  IHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIIL  4174

Range 4: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 38/40(95%) 0/40(0%) Plus/Plus
Query        1  ARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWRI  120
                ARMMYAIRAL RSLTYLMRRKKL*ISRLKEKNFTLLAW I
Subject   4056  ARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWI  4175

Range 5: 4057 to 4173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        2  RG*CTPLER**DH*PI**EERNYRFRD*RKRTLLFSRGG  118
                RG*CTP ER* DH*PI**EERNYRFRD*RKRTLLFSRGG
Subject   4057  RG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGG  4173

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 5

Range 1: 1198 to 1317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 37/40(92%) 0/40(0%) Minus/Minus
Query        1  NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR  120
                NPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPR
Subject   1198  NPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPR  1317

Range 2: 1200 to 1316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        3  EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD  119
                EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D
Subject   1200  EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD  1316

Range 3: 1200 to 1316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 35/39(90%) 0/39(0%) Minus/Minus
Query        3  IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL  119
                I HARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIIL
Subject   1200  IHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIIL  1316

Range 4: 1199 to 1315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 36/39(92%) 0/39(0%) Plus/Plus
Query        2  RG*CTPLER**DH*PI**EERNYRFRD*RKRTLLFSRGG  118
                RG*CTP ER* DH*P+**EERNYRFRD*RKRTLLFSRGG
Subject   1199  RG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGG  1315

Range 5: 1198 to 1317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 36/40(90%) 0/40(0%) Plus/Plus
Query        1  ARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWRI  120
                ARMMYA RAL RSLT LMRRKKL*ISRLKEKNFTLLAW I
Subject   1198  ARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWI  1317

Lettuce mosaic virus isolate CL394, complete genome

Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 5

Range 1: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 37/40(92%) 0/40(0%) Minus/Minus
Query        1  NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR  120
                NPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPR
Subject   4056  NPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPR  4175

Range 2: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        3  EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD  119
                EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D
Subject   4058  EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD  4174

Range 3: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 35/39(90%) 0/39(0%) Minus/Minus
Query        3  IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL  119
                I HARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIIL
Subject   4058  IHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIIL  4174

Range 4: 4057 to 4173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 36/39(92%) 0/39(0%) Plus/Plus
Query        2  RG*CTPLER**DH*PI**EERNYRFRD*RKRTLLFSRGG  118
                RG*CTP ER* DH*P+**EERNYRFRD*RKRTLLFSRGG
Subject   4057  RG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGG  4173

Range 5: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 36/40(90%) 0/40(0%) Plus/Plus
Query        1  ARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWRI  120
                ARMMYA RAL RSLT LMRRKKL*ISRLKEKNFTLLAW I
Subject   4056  ARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWI  4175

Lettuce mosaic virus isolate FR25, complete genome

Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 5

Range 1: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 37/40(92%) 0/40(0%) Minus/Minus
Query        1  NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR  120
                NPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPR
Subject   4056  NPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPR  4175

Range 2: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        3  EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD  119
                EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D
Subject   4058  EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD  4174

Range 3: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 35/39(90%) 0/39(0%) Minus/Minus
Query        3  IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL  119
                I HARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIIL
Subject   4058  IHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIIL  4174

Range 4: 4057 to 4173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 36/39(92%) 0/39(0%) Plus/Plus
Query        2  RG*CTPLER**DH*PI**EERNYRFRD*RKRTLLFSRGG  118
                RG*CTP ER* DH*P+**EERNYRFRD*RKRTLLFSRGG
Subject   4057  RG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGG  4173

Range 5: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 36/40(90%) 0/40(0%) Plus/Plus
Query        1  ARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWRI  120
                ARMMYA RAL RSLT LMRRKKL*ISRLKEKNFTLLAW I
Subject   4056  ARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWI  4175

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 5

Range 1: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        3  EDDVRH*SVDEIIDLFDEKKETIDFEIEGKELYSSRVAD  119
                EDDVRH SVDEIIDLFDEKKETIDFEIEGKELYSSRV D
Subject   4058  EDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVD  4174

Range 2: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 36/40(90%) 0/40(0%) Minus/Minus
Query        1  NPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSNGVHHPR  120
                NPPREKSKVLFLQSRNL*FLSSHQ GQ*  QRS GVHHPR
Subject   4056  NPPREKSKVLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPR  4175

Range 3: 4058 to 4174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 34/39(87%) 0/39(0%) Minus/Minus
Query        3  IRHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIIL  119
                I HARRVKFFSFNLEIYSFFLLIK VND +NAL+AYIIL
Subject   4058  IHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIIL  4174

Range 4: 4057 to 4173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 35/39(90%) 0/39(0%) Plus/Plus
Query        2  RG*CTPLER**DH*PI**EERNYRFRD*RKRTLLFSRGG  118
                RG*CTP ER* +H*P+**EERNYRFRD*RKRTLLFSRGG
Subject   4057  RG*CTPPER*RNH*PV**EERNYRFRD*RKRTLLFSRGG  4173

Range 5: 4056 to 4175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 35/40(88%) 0/40(0%) Plus/Plus
Query        1  ARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWRI  120
                ARMMYA RAL +SLT LMRRKKL*ISRLKEKNFTLLAW I
Subject   4056  ARMMYATRALTKSLTCLMRRKKL*ISRLKEKNFTLLAWWI  4175

Nucleotide Sequence (316 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
316

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
249.9 1407.0 34% 8.072e-65 98% X97704.2
249.4 1397.8 34% 1.109e-64 98% AJ515300.1
249.0 1381.8 34% 1.524e-64 97% KJ161179.1
247.1 1388.2 34% 5.427e-64 98% AJ306288.1
245.3 1341.0 34% 1.933e-63 95% KJ161186.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 5660 to 5953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.9 bits(539) 0.0 98/98(100%) 0/98(0%) Plus/Minus
Query       21  LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  314
                LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA
Subject   5660  LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  5953

Range 2: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
247.6 bits(534) 0.0 99/99(100%) 0/99(0%) Minus/Plus
Query       19  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD  315
                VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD
Subject   5659  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD  5955

Range 3: 5660 to 5962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.0 bits(509) 0.0 99/101(98%) 0/101(0%) Minus/Plus
Query       12  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK  314
                CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++
Subject   5660  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ  5962

Range 4: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 99/99(100%) 0/99(0%) Plus/Minus
Query       19  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  315
                VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH
Subject   5659  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  5955

Range 5: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.9 bits(491) 0.0 99/99(100%) 0/99(0%) Plus/Minus
Query       20  SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  316
                SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT
Subject   5658  SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  5954

Range 6: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 99/99(100%) 0/99(0%) Minus/Plus
Query       20  RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR  316
                RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR
Subject   5658  RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR  5954

Lettuce mosaic virus partial gene for polyprotein, CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515300.1 Length: 529 Number of Matches: 6

Range 1: 181 to 474 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.4 bits(538) 0.0 97/98(99%) 0/98(0%) Plus/Minus
Query       21  LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  314
                LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA
Subject    181  LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  474

Range 2: 180 to 476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.9 bits(526) 0.0 98/99(99%) 0/99(0%) Minus/Plus
Query       19  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD  315
                VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW* GFLRHGD
Subject    180  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*WGFLRHGD  476

Range 3: 181 to 483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.0 bits(509) 0.0 99/101(98%) 0/101(0%) Minus/Plus
Query       12  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK  314
                CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++
Subject    181  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ  483

Range 4: 180 to 476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 99/99(100%) 0/99(0%) Plus/Minus
Query       19  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  315
                VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH
Subject    180  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  476

Range 5: 179 to 475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.6 bits(486) 0.0 98/99(99%) 0/99(0%) Plus/Minus
Query       20  SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  316
                SPCRRNP HQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT
Subject    179  SPCRRNPHHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  475

Range 6: 179 to 475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.2 bits(448) 0.0 98/99(99%) 0/99(0%) Minus/Plus
Query       20  RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR  316
                RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR
Subject    179  RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR  475

Lettuce mosaic virus isolate CL394, complete genome

Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 6

Range 1: 5660 to 5953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 96/98(98%) 0/98(0%) Plus/Minus
Query       21  LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  314
                LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*+SRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA
Subject   5660  LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*ISRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  5953

Range 2: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.5 bits(512) 0.0 96/99(97%) 0/99(0%) Minus/Plus
Query       19  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD  315
                VQNSIHTLCESLHDPSNNQQD*C DGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEI NKPF*REPAKTTSSQRHNHQLRVPGWNW* GFLRHGD
Subject   5659  VQNSIHTLCESLHDPSNNQQD*CLDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEIFNKPF*REPAKTTSSQRHNHQLRVPGWNW*WGFLRHGD  5955

Range 3: 5660 to 5962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.0 bits(509) 0.0 99/101(98%) 0/101(0%) Minus/Plus
Query       12  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK  314
                CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++
Subject   5660  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ  5962

Range 4: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.4 bits(503) 0.0 98/99(99%) 0/99(0%) Plus/Minus
Query       19  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  315
                VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAI+ASILLIVAGIMKGLTESVYAILH
Subject   5659  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIKASILLIVAGIMKGLTESVYAILH  5955

Range 5: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 96/99(97%) 0/99(0%) Plus/Minus
Query       20  SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  316
                SPCRRNP HQFQPGTRS**LCL*LLVVFAGSL*NGLL+IST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPS HQSC*LLLGS*RDSQRVCMLFCT
Subject   5658  SPCRRNPHHQFQPGTRS**LCL*LLVVFAGSL*NGLLNIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSRHQSC*LLLGS*RDSQRVCMLFCT  5954

Range 6: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 97/99(98%) 0/99(0%) Minus/Plus
Query       20  RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR  316
                RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRD QQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR
Subject   5658  RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDIQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR  5954

Lettuce mosaic virus complete genomic RNA, Yuhang isolate

Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6

Range 1: 5660 to 5953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
247.1 bits(533) 0.0 96/98(98%) 0/98(0%) Plus/Minus
Query       21  LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  314
                LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCW+HEGTHRECVCYFA
Subject   5660  LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWNHEGTHRECVCYFA  5953

Range 2: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.3 bits(518) 0.0 97/99(98%) 0/99(0%) Minus/Plus
Query       19  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD  315
                VQNSIHTLCESLHD SNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW* GFLRHGD
Subject   5659  VQNSIHTLCESLHDSSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*WGFLRHGD  5955

Range 3: 5660 to 5962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.0 bits(509) 0.0 99/101(98%) 0/101(0%) Minus/Plus
Query       12  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK  314
                CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMET++
Subject   5660  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETAQ  5962

Range 4: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 99/99(100%) 0/99(0%) Plus/Minus
Query       19  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  315
                VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH
Subject   5659  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  5955

Range 5: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.9 bits(478) 0.0 97/99(98%) 0/99(0%) Plus/Minus
Query       20  SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  316
                SPCRRNP HQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLL S*RDSQRVCMLFCT
Subject   5658  SPCRRNPHHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLES*RDSQRVCMLFCT  5954

Range 6: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.2 bits(448) 0.0 97/99(98%) 0/99(0%) Minus/Plus
Query       20  RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR  316
                RAK*HTHSL*VPS* QQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR
Subject   5658  RAK*HTHSL*VPS*FQQQSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR  5954

Lettuce mosaic virus isolate FR25, complete genome

Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6

Range 1: 5660 to 5953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.3 bits(529) 0.0 95/98(97%) 0/98(0%) Plus/Minus
Query       21  LHVEGTPVTSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCTCVSCDCLEVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  314
                LHVEGTP+TSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DC CVSCDCL+VFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA
Subject   5660  LHVEGTPITSSSLALEVDDCVSDCL*FLQVLSRMVC*VSRPDHVTNTTNGEV*DCACVSCDCLKVFHLLSFFGHQGINLVDCCWDHEGTHRECVCYFA  5953

Range 2: 5660 to 5962 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.8 bits(502) 0.0 97/101(96%) 0/101(0%) Minus/Plus
Query       12  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIINFECQAGTGDGGSFDMETSK  314
                CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTI+NFECQAGT DGGSFDMET++
Subject   5660  CKIAYTLSVSPFMIPATINKIDALMAEERQKMEYFQTVTANTCTISNFSISSIGDMIRSRYSTNHSRENLQKLQAVRDTIVNFECQAGTSDGGSFDMETAQ  5962

Range 3: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 94/99(95%) 0/99(0%) Minus/Plus
Query       19  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILPNSHS*HMYNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNHQLRVPGWNW*RGFLRHGD  315
                VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGIL NSHS*HM+NLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHN QLRVPGWN * GFLRHGD
Subject   5659  VQNSIHTLCESLHDPSNNQQD*CPDGRRTTKDGILSNSHS*HMHNLKLLH**YW*HDQVEILNKPF*REPAKTTSSQRHNRQLRVPGWN**WGFLRHGD  5955

Range 4: 5659 to 5955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 96/99(97%) 0/99(0%) Plus/Minus
Query       19  VSMSKEPPSPVPAWHSKLMIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTVWKYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  315
                VSMSKEPPS VPAWHSKL IVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTV KYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH
Subject   5659  VSMSKEPPSLVPAWHSKLTIVSLTACSFCRFSLEWFVEYLDLIMSPILLMEKFEIVHVLAVTV*KYSIFCRSSAIRASILLIVAGIMKGLTESVYAILH  5955

Range 5: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(455) 0.0 94/99(95%) 0/99(0%) Plus/Minus
Query       20  SPCRRNPRHQFQPGTRS**LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLYMC*L*LFGSIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  316
                SPCRRNP H FQPGTRS* LCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRL MC*L*LF SIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT
Subject   5658  SPCRRNPHH*FQPGTRS*RLCL*LLVVFAGSL*NGLLSIST*SCHQYY*WRSLRLCMC*L*LFESIPSFVVLRPSGHQSC*LLLGS*RDSQRVCMLFCT  5954

Range 6: 5658 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 96/99(97%) 0/99(0%) Minus/Plus
Query       20  RAK*HTHSL*VPXXXXXXSTRLMP*WPKNDKRWNTSKQSQLTHVQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVTGVPSTWR  316
                RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNT KQSQLTH QSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELV GVPSTWR
Subject   5658  RAK*HTHSL*VPS*SQQQSTRLMP*WPKNDKRWNTFKQSQLTHAQSQTSPLVVLVT*SGRDTQQTILERTCKNYKQSETQSSTSSARLELVMGVPSTWR  5954

Nucleotide Sequence (188 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
19
38
57
76
95
114
133
152
171
188

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
114.7 620.9 26% 9.19e-25 90% KJ161186.1
117.5 627.7 26% 1.367e-25 94% X97704.2
112.9 603.5 26% 3.274e-24 91% KM016821.1
110.6 595.2 26% 1.602e-23 91% KJ161176.1
109.7 592.5 26% 3.024e-23 89% KJ161173.1

Alignments

Lettuce mosaic virus isolate FR25, complete genome

Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6

Range 1: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 46/48(96%) 0/48(0%) Plus/Plus
Query        1  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR  144
                IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK GHTLH+APYGSIQR
Subject   1276  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHYAPYGSIQR  1419

Range 2: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 46/47(98%) 0/47(0%) Minus/Minus
Query        3  RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  143
                RCIEPYGA*WSV*P+FANL*LHHLPYP*QRIYCVALNQIFL*FLTSS
Subject   1278  RCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  1418

Range 3: 1277 to 1417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 44/47(94%) 0/47(0%) Minus/Minus
Query        2  AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ  142
                AVLNHTVR+GVCDL+LRIYNFTIYPTPNNEYT SP*TKFSYDF*RVQ
Subject   1277  AVLNHTVRNGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQ  1417

Range 4: 1277 to 1420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 45/48(94%) 0/48(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE  145
                LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+
Subject   1277  LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD  1420

Range 5: 1278 to 1424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 44/49(90%) 0/49(0%) Plus/Plus
Query        3  *TRQKS*ENLV*GDAVYSLLGVG*MVKL*IRKERSHTPSRTVWFNTANI  149
                *TRQKS*ENLV*GD VYSLLGVG*MVKL*IRK RSHTP RTVWFNTA +
Subject   1278  *TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPLRTVWFNTATL  1424

Range 6: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 46/48(96%) 0/48(0%) Minus/Minus
Query        1  SLY*TIRCVMECVTFLCESIXXXXXXXXXTNILRRLKPNFPMIFDEFN  144
                SLY*TIRCVMECVT LCESITSPSTLPLTTNIL RLKPNFPMIFDEFN
Subject   1276  SLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFN  1419

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        1  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR  144
                IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK GHTLHHAPYGSIQR
Subject   1276  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQR  1419

Range 2: 1277 to 1417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 45/47(96%) 0/47(0%) Minus/Minus
Query        2  AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ  142
                AVLNHTVRDGVCDL+LRIYNFTIYPTPNNEYT SP*TKFSYDF*RVQ
Subject   1277  AVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQ  1417

Range 3: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 46/47(98%) 0/47(0%) Minus/Minus
Query        3  RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  143
                RCIEPYGA*WSV*P+FANL*LHHLPYP*QRIYCVALNQIFL*FLTSS
Subject   1278  RCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  1418

Range 4: 1277 to 1420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 45/48(94%) 0/48(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE  145
                LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+
Subject   1277  LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD  1420

Range 5: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 45/47(96%) 0/47(0%) Plus/Plus
Query        3  *TRQKS*ENLV*GDAVYSLLGVG*MVKL*IRKERSHTPSRTVWFNTA  143
                *TRQKS*ENLV*GD VYSLLGVG*MVKL*IRK RSHTPSRTVWFNTA
Subject   1278  *TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTA  1418

Range 6: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 46/48(96%) 0/48(0%) Minus/Minus
Query        1  SLY*TIRCVMECVTFLCESIXXXXXXXXXTNILRRLKPNFPMIFDEFN  144
                SLY*TIRCVMECVT LCESITSPSTLPLTTNIL RLKPNFPMIFDEFN
Subject   1276  SLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFN  1419

Lettuce mosaic virus isolate Forte Lavras MG polyprotein gene, partial cds

Sequence ID: KM016821.1 Length: 2697 Number of Matches: 6

Range 1: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 45/48(94%) 0/48(0%) Plus/Plus
Query        1  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR  144
                IELVKNHRKIWFKATQ+IRC*G GRW*SYRFAK GHTLHHAPYGSIQR
Subject   1276  IELVKNHRKIWFKATQHIRC*GEGRW*SYRFAK*GHTLHHAPYGSIQR  1419

Range 2: 1277 to 1417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 43/47(91%) 0/47(0%) Minus/Minus
Query        2  AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ  142
                AVLNHTVRDGVCDL+LRIYNFTIYP PNNEY  SP*TKFSYDF*RVQ
Subject   1277  AVLNHTVRDGVCDLTLRIYNFTIYPPPNNEYAVSP*TKFSYDF*RVQ  1417

Range 3: 1277 to 1420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 45/48(94%) 0/48(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE  145
                LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+
Subject   1277  LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD  1420

Range 4: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 44/47(94%) 0/47(0%) Minus/Minus
Query        3  RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  143
                RCIEPYGA*WSV*P+FANL*LHHLP P*QRI CVALNQIFL*FLTSS
Subject   1278  RCIEPYGA*WSV*PYFANL*LHHLPSP*QRICCVALNQIFL*FLTSS  1418

Range 5: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 43/47(91%) 0/47(0%) Plus/Plus
Query        3  *TRQKS*ENLV*GDAVYSLLGVG*MVKL*IRKERSHTPSRTVWFNTA  143
                *TRQKS*ENLV*GD  YSLLG G*MVKL*IRK RSHTPSRTVWFNTA
Subject   1278  *TRQKS*ENLV*GDTAYSLLGGG*MVKL*IRKVRSHTPSRTVWFNTA  1418

Range 6: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 45/48(94%) 0/48(0%) Minus/Minus
Query        1  SLY*TIRCVMECVTFLCESIXXXXXXXXXTNILRRLKPNFPMIFDEFN  144
                SLY*TIRCVMECVT LCESITSPSTLPLTTN+L RLKPNFPMIFDEFN
Subject   1276  SLY*TIRCVMECVTLLCESITSPSTLPLTTNMLCRLKPNFPMIFDEFN  1419

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6

Range 1: 1276 to 1416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 44/47(94%) 0/47(0%) Plus/Plus
Query        1  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQ  141
                IELVKNHRKIWFKATQ+IRC*G GRW*SYRFAK GHTLHHAPYGSIQ
Subject   1276  IELVKNHRKIWFKATQHIRC*GEGRW*SYRFAK*GHTLHHAPYGSIQ  1416

Range 2: 1277 to 1420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 45/48(94%) 0/48(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE  145
                LNSSKIIGKFGLRR SIFVVRGRVDGEVIDSQ KVTHSITHRMVQYS+
Subject   1277  LNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSD  1420

Range 3: 1277 to 1414 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 42/46(91%) 0/46(0%) Minus/Minus
Query        2  VLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ  139
                VLNHTVRDGVCDL+LRIYNFTIYP PNNEY  SP*TKFSYDF*RVQ
Subject   1277  VLNHTVRDGVCDLTLRIYNFTIYPPPNNEYAVSP*TKFSYDF*RVQ  1414

Range 4: 1278 to 1415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 43/46(93%) 0/46(0%) Minus/Minus
Query        3  CIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  140
                CIEPYGA*WSV*P+FANL*LHHLP P*QRI CVALNQIFL*FLTSS
Subject   1278  CIEPYGA*WSV*PYFANL*LHHLPSP*QRICCVALNQIFL*FLTSS  1415

Range 5: 1278 to 1415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 42/46(91%) 0/46(0%) Plus/Plus
Query        3  *TRQKS*ENLV*GDAVYSLLGVG*MVKL*IRKERSHTPSRTVWFNT  140
                *TRQKS*ENLV*GD  YSLLG G*MVKL*IRK RSHTPSRTVWFNT
Subject   1278  *TRQKS*ENLV*GDTAYSLLGGG*MVKL*IRKVRSHTPSRTVWFNT  1415

Range 6: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 45/48(94%) 0/48(0%) Minus/Minus
Query        1  SLY*TIRCVMECVTFLCESIXXXXXXXXXTNILRRLKPNFPMIFDEFN  144
                SLY*TIRCVMECVT LCESITSPSTLPLTTN+L RLKPNFPMIFDEFN
Subject   1276  SLY*TIRCVMECVTLLCESITSPSTLPLTTNMLCRLKPNFPMIFDEFN  1419

Lettuce mosaic virus isolate 13, complete genome

Sequence ID: KJ161173.1 Length: 10080 Number of Matches: 6

Range 1: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 43/48(90%) 0/48(0%) Plus/Plus
Query        1  IELVKNHRKIWFKATQYIRC*G*GRW*SYRFAKKGHTLHHAPYGSIQR  144
                IELVKNHRKIWFKATQ+IRC*G GRW*+YRFAK GHT HHAPYGSIQR
Subject   1276  IELVKNHRKIWFKATQHIRC*GEGRW*NYRFAK*GHTFHHAPYGSIQR  1419

Range 2: 1277 to 1417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 42/47(89%) 0/47(0%) Minus/Minus
Query        2  AVLNHTVRDGVCDLSLRIYNFTIYPTPNNEYTASP*TKFSYDF*RVQ  142
                AVLNHTVRDG+CDL+LRIYNFTIYP PNNEY  SP*TKFSYDF*RVQ
Subject   1277  AVLNHTVRDGMCDLTLRIYNFTIYPPPNNEYAVSP*TKFSYDF*RVQ  1417

Range 3: 1277 to 1420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 44/48(92%) 0/48(0%) Plus/Plus
Query        2  LNSSKIIGKFGLRRRSIFVVRGRVDGEVIDSQRKVTHSITHRMVQYSE  145
                LNSSKIIGKFGLRR SIFVVRGRVDGE+IDSQ KVTHSITHRMVQYS+
Subject   1277  LNSSKIIGKFGLRRHSIFVVRGRVDGEIIDSQSKVTHSITHRMVQYSD  1420

Range 4: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 42/47(89%) 0/47(0%) Minus/Minus
Query        3  RCIEPYGA*WSV*PFFANL*LHHLPYP*QRIYCVALNQIFL*FLTSS  143
                RCIEPYGA*W+V*P+FANL* HHLP P*QRI CVALNQIFL*FLTSS
Subject   1278  RCIEPYGA*WNV*PYFANL*FHHLPSP*QRICCVALNQIFL*FLTSS  1418

Range 5: 1278 to 1418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 42/47(89%) 0/47(0%) Plus/Plus
Query        3  *TRQKS*ENLV*GDAVYSLLGVG*MVKL*IRKERSHTPSRTVWFNTA  143
                *TRQKS*ENLV*GD  YSLLG G*MVKL*IRK RSH PSRTVWFNTA
Subject   1278  *TRQKS*ENLV*GDTAYSLLGGG*MVKL*IRKVRSHIPSRTVWFNTA  1418

Range 6: 1276 to 1419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 44/48(92%) 0/48(0%) Minus/Minus
Query        1  SLY*TIRCVMECVTFLCESIXXXXXXXXXTNILRRLKPNFPMIFDEFN  144
                SLY*TIRCVMECVT LCESI SPSTLPLTTN+L RLKPNFPMIFDEFN
Subject   1276  SLY*TIRCVMECVTLLCESIISPSTLPLTTNMLCRLKPNFPMIFDEFN  1419

Nucleotide Sequence (200 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
200

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
169.2 918.2 43% 4.721e-41 98% X97704.2
169.2 892.6 34% 4.721e-41 94% KM016821.1
169.2 801.9 34% 4.721e-41 80% KJ161175.1
169.2 881.1 34% 4.721e-41 92% KJ161176.1
169.2 861.0 34% 4.721e-41 89% KJ161177.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 66/66(100%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  1528

Range 2: 1330 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 65/66(98%) 0/66(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH  198
                RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT+LLERILNLFHAQHPKGHTPYLHIRF*C*RMWH
Subject   1330  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHPKGHTPYLHIRF*C*RMWH  1527

Range 3: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 65/66(98%) 0/66(0%) Minus/Minus
Query        2  SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  199
                SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEV CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN
Subject   1331  SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  1528

Range 4: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 65/66(98%) 0/66(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL  200
                LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH TSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL
Subject   1332  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL  1529

Range 5: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 65/66(98%) 0/66(0%) Minus/Minus
Query        3  QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  200
                QCHIL*HQNLMCRYGVCPLGCCA*NKLSIRSRS VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q
Subject   1332  QCHIL*HQNLMCRYGVCPLGCCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  1529

Range 6: 1360 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 56/56(100%) 0/56(0%) Minus/Minus
Query       31  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  198
                VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1527

Lettuce mosaic virus isolate Forte Lavras MG polyprotein gene, partial cds

Sequence ID: KM016821.1 Length: 2697 Number of Matches: 6

Range 1: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 66/66(100%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  1528

Range 2: 1330 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 63/66(95%) 0/66(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH  198
                RC*G GRW*SYRFAK*GHTLHHAPYGSIQRRRT+LLERILNLFHAQHPKGHTPYLHIR *C*RMWH
Subject   1330  RC*GEGRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHPKGHTPYLHIRL*C*RMWH  1527

Range 3: 1331 to 1525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.6 bits(331) 0.0 62/65(95%) 0/65(0%) Minus/Minus
Query        2  ATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  196
                ATFFNIK+*CAGMEYVLWGVVHETS*VSVPEV CDVAVLNHTVRDGVCDLTLRIYNFTIYP PNN
Subject   1331  ATFFNIKV*CAGMEYVLWGVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPPPNN  1525

Range 4: 1332 to 1526 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 62/65(95%) 0/65(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVA  197
                LLG G*MVKL*IRKVRSHTPSRTVWFNTATSH TSGTDTQLVSCTTPQRTYSIPAHQ LMLKNVA
Subject   1332  LLGGG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIPAHQTLMLKNVA  1526

Range 5: 1360 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 56/56(100%) 0/56(0%) Minus/Minus
Query       31  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  198
                VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1527

Range 6: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 62/66(94%) 0/66(0%) Minus/Minus
Query        3  QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  200
                +CHIL*HQ+LMCRYGVCPLGCCA*NKLSIRSRS VRRRCIEPYGA*WSV*PYFANL*LHHLP P*Q
Subject   1332  RCHIL*HQSLMCRYGVCPLGCCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPSP*Q  1529

Lettuce mosaic virus isolate CL117, complete genome

Sequence ID: KJ161175.1 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 66/66(100%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  1528

Range 2: 1360 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 56/56(100%) 0/56(0%) Minus/Minus
Query       31  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  198
                VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1527

Range 3: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 53/66(80%) 0/66(0%) Minus/Minus
Query        2  SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  199
                SATFF+IKI*CAG+EYV WGVVHETS*+SVPEV CD+ VLNHTV DGVCDL LRIY+FTIY  P+N
Subject   1331  SATFFDIKI*CAGVEYVFWGVVHETS*ISVPEVSCDITVLNHTVCDGVCDLALRIYHFTIYSPPDN  1528

Range 4: 1330 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 53/66(80%) 0/66(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH  198
                RC G  RW*S RFAK GHTLHH PYGSIQ  RT+LLERI NLFHAQHPK HTP+LHIRF*C RMWH
Subject   1330  RCQGESRW*SDRFAKQGHTLHHTPYGSIQ*CRTKLLERIFNLFHAQHPKRHTPHLHIRF*CQRMWH  1527

Range 5: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 53/66(80%) 0/66(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL  200
                L G  *MVK *IRK RSHTPS TVWFNT  SH TSGTD QLVSCTTPQ+TYS PAHQILM KNVAL
Subject   1332  LSGGE*MVK**IRKARSHTPSHTVWFNTVMSHETSGTDIQLVSCTTPQKTYSTPAHQILMSKNVAL  1529

Range 6: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 55/66(83%) 0/66(0%) Minus/Minus
Query        3  QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  200
                QCHIL*HQNLMCR GVC LGCCA*NKL+IRSRS VR  CIEPYG *WSV*P FANL LHHL  P*Q
Subject   1332  QCHIL*HQNLMCRCGVCLLGCCA*NKLNIRSRSFVRHHCIEPYGV*WSV*PCFANLSLHHLLSP*Q  1529

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 66/66(100%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  1528

Range 2: 1330 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 61/66(92%) 0/66(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH  198
                RC*G GRW*SYRFAK*GHTLHHAPYGSIQ RRT+LLER+LNLFHAQ+PKGHTPYLHIRF*C*RMWH
Subject   1330  RC*GEGRW*SYRFAK*GHTLHHAPYGSIQ*RRTKLLERVLNLFHAQYPKGHTPYLHIRF*C*RMWH  1527

Range 3: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 61/66(92%) 0/66(0%) Minus/Minus
Query        2  SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  199
                SATFFNIKI*CAGMEYVLWG+VHETS*V VPEV CDV VLNHTVRDGVCDLTLRIYNFTIYP PNN
Subject   1331  SATFFNIKI*CAGMEYVLWGIVHETS*VPVPEVSCDVTVLNHTVRDGVCDLTLRIYNFTIYPPPNN  1528

Range 4: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 61/66(92%) 0/66(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL  200
                LLG G*MVKL*IRKVRSHTPSRTVWFNT TSH TSGT TQLVSCT PQRTYSIPAHQILMLKNVAL
Subject   1332  LLGGG*MVKL*IRKVRSHTPSRTVWFNTVTSHETSGTGTQLVSCTIPQRTYSIPAHQILMLKNVAL  1529

Range 5: 1360 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 56/56(100%) 0/56(0%) Minus/Minus
Query       31  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  198
                VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1527

Range 6: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.5 bits(272) 0.0 61/66(92%) 0/66(0%) Minus/Minus
Query        3  QCHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  200
                QCHIL*HQNLMCRYGVCPLG CA*NKLS RSRS VRR CIEPYGA*WSV*PYFANL*LHHLP P*Q
Subject   1332  QCHIL*HQNLMCRYGVCPLGYCA*NKLSTRSRSFVRRHCIEPYGA*WSV*PYFANL*LHHLPSP*Q  1529

Lettuce mosaic virus isolate CL246, complete genome

Sequence ID: KJ161177.1 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 66/66(100%) 0/66(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  199
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHTCTSDFDVKECGT  1528

Range 2: 1330 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.9 bits(323) 0.0 59/66(89%) 0/66(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTELLERILNLFHAQHPKGHTPYLHIRF*C*RMWH  198
                RC*G GRW*SYRFAK*G+TLHHAP+GSIQRRRT+LLERI NLFHAQHPKGHTP+LHIRF*C RMWH
Subject   1330  RC*GEGRW*SYRFAK*GYTLHHAPHGSIQRRRTKLLERIFNLFHAQHPKGHTPHLHIRF*CQRMWH  1527

Range 3: 1331 to 1528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 59/66(89%) 0/66(0%) Minus/Minus
Query        2  SATFFNIKI*CAGMEYVLWGVVHETS*VSVPEVPCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  199
                SATFF+IKI*CAG+EYVLWGVVHETS*+SVPEV CDVAVLNH VRDGVC+LTLRIYNFTIYP PNN
Subject   1331  SATFFDIKI*CAGVEYVLWGVVHETS*ISVPEVSCDVAVLNHAVRDGVCNLTLRIYNFTIYPPPNN  1528

Range 4: 1332 to 1529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 59/66(89%) 0/66(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHGTSGTDTQLVSCTTPQRTYSIPAHQILMLKNVAL  200
                LLG G*MVKL*IRKVR HTPSRT WFNTATSH TSGTD QLVSCTTPQRTYS PAHQILM KNVAL
Subject   1332  LLGGG*MVKL*IRKVRLHTPSRTAWFNTATSHETSGTDIQLVSCTTPQRTYSTPAHQILMSKNVAL  1529

Range 5: 1360 to 1527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 55/56(98%) 0/56(0%) Minus/Minus
Query       31  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  198
                VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*T+RCVMECVTLLCESI
Subject   1360  VPHSLTSKSDVQVWSMSFGVLCMKQVEYPFQKFRATSLY*TMRCVMECVTLLCESI  1527

Range 6: 1332 to 1526 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 60/65(92%) 0/65(0%) Minus/Minus
Query        3  CHIL*HQNLMCRYGVCPLGCCA*NKLXXXXXXXXXXRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  197
                CHIL*HQNLMCR GVCPLGCCA*NKL+IRSRS VRRRCIEP GA*WSV*PYFANL*LHHLP P*Q
Subject   1332  CHIL*HQNLMCRCGVCPLGCCA*NKLNIRSRSFVRRRCIEPCGA*WSV*PYFANL*LHHLPSP*Q  1526

Nucleotide Sequence (159 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
16
32
48
64
80
96
112
128
144
159

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
110.1 572.2 14% 1.67e-23 94% X97704.2
103.7 545.6 14% 1.425e-21 87% AJ515299.1
101.9 536.5 14% 5.075e-21 88% KJ161186.1
101.9 516.3 14% 5.075e-21 85% KJ161190.1
101.9 516.3 14% 5.075e-21 85% KJ161191.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 49/50(98%) 0/50(0%) Plus/Plus
Query        9  REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  158
                REVIACTGVYQSSNH*YLRARMMYAIRAL RSLTYLMRRKKL*ISRLKEK
Subject   3999  REVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEK  4148

Range 2: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 48/50(96%) 0/50(0%) Minus/Minus
Query        9  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS  158
                LFLQSRNL*FLSSHQIGQ*S QRSDGVHHPR+*ILMI*ALINSCTRNHFS
Subject   3999  LFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHFS  4148

Range 3: 3992 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 49/52(94%) 0/52(0%) Minus/Minus
Query        2  FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL  157
                FSFNLEIYSFFLLIK*VNDL+NALMAYIILARRY**FEL**TPVHAITSL +
Subject   3992  FSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITSLAV  4147

Range 4: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 48/50(96%) 0/50(0%) Plus/Plus
Query       10  EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR  159
                EK*LRVQEFIKAQIISIY RG*CTPSER* DH*PI**EERNYRFRD*RKR
Subject   4000  EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKR  4149

Range 5: 3995 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.8 bits(207) 0.0 50/51(98%) 0/51(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  157
                SERSDCVYRSLSKLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  4147

Range 6: 3994 to 4053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 20/20(100%) 0/20(0%) Minus/Minus
Query        4  VDTNDLSFDKLLYTQSLLSL  63
                VDTNDLSFDKLLYTQSLLSL
Subject   3994  VDTNDLSFDKLLYTQSLLSL  4053

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 6

Range 1: 1138 to 1290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 47/51(92%) 0/51(0%) Plus/Plus
Query        6  VREVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  158
                VREVI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEK
Subject   1138  VREVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEK  1290

Range 2: 1134 to 1289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 47/52(90%) 0/52(0%) Minus/Minus
Query        2  FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL  157
                FSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH ITSLT+
Subject   1134  FSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITSLTV  1289

Range 3: 1138 to 1290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 45/51(88%) 0/51(0%) Minus/Minus
Query        6  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFSH  158
                LFLQSRNL*FLSSHQ GQ*S QRS GVHHPR+*ILMI*ALI+SCT NHFSH
Subject   1138  LFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFSH  1290

Range 4: 1137 to 1289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.8 bits(207) 0.0 50/51(98%) 0/51(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  157
                SERSDCVYRSLSKLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK
Subject   1137  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  1289

Range 5: 1136 to 1291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 45/52(87%) 0/52(0%) Plus/Plus
Query        4  E*EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR  159
                +*EK*L VQE IKAQIISIY RG*CTP ER* DH*P+**EERNYRFRD*RKR
Subject   1136  Q*EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKR  1291

Range 6: 1136 to 1195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query        4  VDTNDLSFDKLLYTQSLLSL  63
                VDTNDLSFD+LLYTQSLLSL
Subject   1136  VDTNDLSFDRLLYTQSLLSL  1195

Lettuce mosaic virus isolate FR25, complete genome

Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6

Range 1: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 46/50(92%) 0/50(0%) Plus/Plus
Query        9  REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  158
                REVI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEK
Subject   3999  REVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEK  4148

Range 2: 3992 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 46/52(88%) 0/52(0%) Minus/Minus
Query        2  FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL  157
                FSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH ITSL +
Subject   3992  FSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITSLAV  4147

Range 3: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 44/50(88%) 0/50(0%) Minus/Minus
Query        9  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS  158
                LFLQSRNL*FLSSHQ GQ*S QRS GVHHPR+*ILMI*ALI+SCT NHFS
Subject   3999  LFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFS  4148

Range 4: 3995 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.8 bits(207) 0.0 50/51(98%) 0/51(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  157
                SERSDCVYRSLSKLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  4147

Range 5: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 44/50(88%) 0/50(0%) Plus/Plus
Query       10  EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR  159
                EK*L VQE IKAQIISIY RG*CTP ER* DH*P+**EERNYRFRD*RKR
Subject   4000  EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKR  4149

Range 6: 3994 to 4053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query        4  VDTNDLSFDKLLYTQSLLSL  63
                VDTNDLSFD+LLYTQSLLSL
Subject   3994  VDTNDLSFDRLLYTQSLLSL  4053

Lettuce mosaic virus isolate Tn516, complete genome

Sequence ID: KJ161190.1 Length: 10080 Number of Matches: 6

Range 1: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 44/50(88%) 0/50(0%) Minus/Minus
Query        9  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS  158
                LFLQSRNL FLSSH+ GQ*SHQRS G HHPR+*ILMI*ALINSCTRNHFS
Subject   3999  LFLQSRNLSFLSSHRTGQ*SHQRSGGAHHPRT*ILMI*ALINSCTRNHFS  4148

Range 2: 3995 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.8 bits(207) 0.0 49/51(96%) 0/51(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  157
                SERSDCVYRSL KLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK
Subject   3995  SERSDCVYRSLLKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  4147

Range 3: 3992 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 44/52(85%) 0/52(0%) Minus/Minus
Query        2  FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL  157
                FSFNLEIY FFLLI+ VNDLINAL+A+IILARRY**F+L**TPVHAITSL +
Subject   3992  FSFNLEIYRFFLLIEQVNDLINALVAHIILARRY**FKL**TPVHAITSLAV  4147

Range 4: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 43/50(86%) 0/50(0%) Plus/Plus
Query        9  REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  158
                REVIACTGVY S NH*YLRARMM A RALMRSLT  MRRKK *ISRLKEK
Subject   3999  REVIACTGVY*SLNH*YLRARMMCATRALMRSLTCSMRRKKR*ISRLKEK  4148

Range 5: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 43/50(86%) 0/50(0%) Plus/Plus
Query       10  EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR  159
                EK*LRVQEFIKA IISIY RG*C P ER**DH*P+ *EERN RFRD*RKR
Subject   4000  EK*LRVQEFIKA*IISIYVRG*CAPPER**DH*PVR*EERNDRFRD*RKR  4149

Range 6: 3994 to 4053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query        4  VDTNDLSFDKLLYTQSLLSL  63
                VDTNDLSF+KLLYTQSLLSL
Subject   3994  VDTNDLSFNKLLYTQSLLSL  4053

Lettuce mosaic virus isolate Tn516 ev, complete genome

Sequence ID: KJ161191.1 Length: 10080 Number of Matches: 6

Range 1: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 44/50(88%) 0/50(0%) Minus/Minus
Query        9  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRS*ILMI*ALINSCTRNHFS  158
                LFLQSRNL FLSSH+ GQ*SHQRS G HHPR+*ILMI*ALINSCTRNHFS
Subject   3999  LFLQSRNLSFLSSHRTGQ*SHQRSGGAHHPRT*ILMI*ALINSCTRNHFS  4148

Range 2: 3995 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.8 bits(207) 0.0 49/51(96%) 0/51(0%) Plus/Plus
Query        5  SERSDCVYRXXXXXXXXVSTSEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  157
                SERSDCVYRSL KLKSLVST EDDVRHQSVDEIIDLFDEKKETIDFEIEGK
Subject   3995  SERSDCVYRSLLKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGK  4147

Range 3: 3992 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 44/52(85%) 0/52(0%) Minus/Minus
Query        2  FSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITSLTL  157
                FSFNLEIY FFLLI+ VNDLINAL+A+IILARRY**F+L**TPVHAITSL +
Subject   3992  FSFNLEIYRFFLLIEQVNDLINALVAHIILARRY**FKL**TPVHAITSLAV  4147

Range 4: 3999 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 43/50(86%) 0/50(0%) Plus/Plus
Query        9  REVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  158
                REVIACTGVY S NH*YLRARMM A RALMRSLT  MRRKK *ISRLKEK
Subject   3999  REVIACTGVY*SLNH*YLRARMMCATRALMRSLTCSMRRKKR*ISRLKEK  4148

Range 5: 4000 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 43/50(86%) 0/50(0%) Plus/Plus
Query       10  EK*LRVQEFIKAQIISIYERG*CTPSER**DH*PI**EERNYRFRD*RKR  159
                EK*LRVQEFIKA IISIY RG*C P ER**DH*P+ *EERN RFRD*RKR
Subject   4000  EK*LRVQEFIKA*IISIYVRG*CAPPER**DH*PVR*EERNDRFRD*RKR  4149

Range 6: 3994 to 4053 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query        4  VDTNDLSFDKLLYTQSLLSL  63
                VDTNDLSF+KLLYTQSLLSL
Subject   3994  VDTNDLSFNKLLYTQSLLSL  4053

Nucleotide Sequence (326 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
326

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
194.0 1048.1 33% 5.631e-48 93% X97704.2
189.8 1027.0 33% 9.817e-47 90% AJ515299.1
189.8 1027.0 33% 9.817e-47 90% KJ161179.1
189.8 1027.0 33% 9.817e-47 90% KJ161186.1
185.3 994.5 33% 2.351e-45 88% KF955619.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 7

Range 1: 4055 to 4306 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.0 bits(417) 0.0 78/84(93%) 0/84(0%) Minus/Minus
Query        3  VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA  254
                V+  FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK*+NDL+NALMAYIILA
Subject   4055  VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILA  4306

Range 2: 4053 to 4292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 77/80(96%) 0/80(0%) Plus/Plus
Query        1  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  240
                RARMMYAIRAL RSL YLMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP
Subject   4053  RARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  4292

Range 3: 4055 to 4294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 77/80(96%) 0/80(0%) Plus/Plus
Query        3  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK  242
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE  4294

Range 4: 4053 to 4289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.2 bits(387) 0.0 76/79(96%) 0/79(0%) Minus/Minus
Query        1  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  237
                LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQI Q*S QRSDGVHHPRT
Subject   4053  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT  4289

Range 5: 4054 to 4293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.8 bits(373) 0.0 76/80(95%) 0/80(0%) Plus/Plus
Query        2  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ  241
                VRG*CTPSER* DH* I**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+
Subject   4054  VRG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR  4293

Range 6: 4153 to 4290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query      101  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVESTTREE*  238
                AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLS HLLNVESTTREE*
Subject   4153  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSHHLLNVESTTREE*  4290

Range 7: 4054 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 10/10(100%) 0/10(0%) Minus/Minus
Query        2  TL*WRTSSSH  31
                TL*WRTSSSH
Subject   4054  TL*WRTSSSH  4083

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 7

Range 1: 1197 to 1448 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 76/84(90%) 0/84(0%) Minus/Minus
Query        3  VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA  254
                V+  FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +NDL+NAL+AYIILA
Subject   1197  VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA  1448

Range 2: 1197 to 1436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 77/80(96%) 0/80(0%) Plus/Plus
Query        3  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK  242
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+
Subject   1197  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE  1436

Range 3: 1195 to 1434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 75/80(94%) 0/80(0%) Plus/Plus
Query        1  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  240
                RARMMYA RAL RSL  LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP
Subject   1195  RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  1434

Range 4: 1195 to 1431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 74/79(94%) 0/79(0%) Minus/Minus
Query        1  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  237
                LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ  Q*S QRS GVHHPRT
Subject   1195  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT  1431

Range 5: 1196 to 1435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 74/80(92%) 0/80(0%) Plus/Plus
Query        2  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ  241
                VRG*CTP ER* DH* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+
Subject   1196  VRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR  1435

Range 6: 1295 to 1432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query      101  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVESTTREE*  238
                AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLS HLLNVESTTREE*
Subject   1295  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSHHLLNVESTTREE*  1432

Range 7: 1196 to 1225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/10(90%) 0/10(0%) Minus/Minus
Query        2  TL*WRTSSSH  31
                TL WRTSSSH
Subject   1196  TLWWRTSSSH  1225

Lettuce mosaic virus isolate CL394, complete genome

Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 7

Range 1: 4055 to 4306 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 76/84(90%) 0/84(0%) Minus/Minus
Query        3  VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA  254
                V+  FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +NDL+NAL+AYIILA
Subject   4055  VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA  4306

Range 2: 4055 to 4294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 77/80(96%) 0/80(0%) Plus/Plus
Query        3  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK  242
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE  4294

Range 3: 4053 to 4292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 75/80(94%) 0/80(0%) Plus/Plus
Query        1  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  240
                RARMMYA RAL RSL  LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP
Subject   4053  RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  4292

Range 4: 4053 to 4289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 74/79(94%) 0/79(0%) Minus/Minus
Query        1  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  237
                LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ  Q*S QRS GVHHPRT
Subject   4053  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT  4289

Range 5: 4054 to 4293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 74/80(92%) 0/80(0%) Plus/Plus
Query        2  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ  241
                VRG*CTP ER* DH* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+
Subject   4054  VRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR  4293

Range 6: 4153 to 4290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query      101  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVESTTREE*  238
                AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLS HLLNVESTTREE*
Subject   4153  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSHHLLNVESTTREE*  4290

Range 7: 4054 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/10(90%) 0/10(0%) Minus/Minus
Query        2  TL*WRTSSSH  31
                TL WRTSSSH
Subject   4054  TLWWRTSSSH  4083

Lettuce mosaic virus isolate FR25, complete genome

Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 7

Range 1: 4055 to 4306 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
189.8 bits(408) 0.0 76/84(90%) 0/84(0%) Minus/Minus
Query        3  VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA  254
                V+  FGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +NDL+NAL+AYIILA
Subject   4055  VMCYFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA  4306

Range 2: 4055 to 4294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 77/80(96%) 0/80(0%) Plus/Plus
Query        3  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK  242
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE  4294

Range 3: 4053 to 4292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 75/80(94%) 0/80(0%) Plus/Plus
Query        1  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  240
                RARMMYA RAL RSL  LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP
Subject   4053  RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  4292

Range 4: 4053 to 4289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 74/79(94%) 0/79(0%) Minus/Minus
Query        1  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  237
                LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ  Q*S QRS GVHHPRT
Subject   4053  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT  4289

Range 5: 4054 to 4293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 74/80(92%) 0/80(0%) Plus/Plus
Query        2  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ  241
                VRG*CTP ER* DH* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPIGTRQHDGTLQNRGALHDVHS*NSCERGS+
Subject   4054  VRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSR  4293

Range 6: 4153 to 4290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query      101  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVESTTREE*  238
                AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLS HLLNVESTTREE*
Subject   4153  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSHHLLNVESTTREE*  4290

Range 7: 4054 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/10(90%) 0/10(0%) Minus/Minus
Query        2  TL*WRTSSSH  31
                TL WRTSSSH
Subject   4054  TLWWRTSSSH  4083

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 7

Range 1: 4055 to 4294 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 77/80(96%) 0/80(0%) Plus/Plus
Query        3  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKEPYSSRVVDSTFSKWRDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAK  242
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE YSSRVVDSTFSKW DNQLVRGNTMAHYRTEGHFMTFTRETAASVAA+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDNQLVRGNTMAHYRTEGHFMTFTRETAASVAAE  4294

Range 2: 4055 to 4306 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 74/84(88%) 0/84(0%) Minus/Minus
Query        3  VLGVFGCHARSCFTSERHEVPLCSVVCHRVASYQLVVPPLTECRIHHARRVRFFSFNLEIYSFFLLIK*INDLINALMAYIILA  254
                V+  FGCHARSCFTSERHEVPLCSVVCHRVASY LVVPPLTECRIHHARRV+FFSFNLEIYSFFLLIK +ND +NAL+AYIILA
Subject   4055  VMCYFGCHARSCFTSERHEVPLCSVVCHRVASY*LVVPPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIILA  4306

Range 3: 4056 to 4292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 72/79(91%) 0/79(0%) Plus/Plus
Query        4  ARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNLTLLAWWIRHSVSGGTTNWYEATRWHTTEQRGTS*RSLVKQLRAWQP  240
                ARMMYA RAL +SL  LMRRKKL*ISRLKEKN TLLAWWIRHSVSGGTTN YEATRWHTTEQRGTS*RSLVKQLRAWQP
Subject   4056  ARMMYATRALTKSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTTN*YEATRWHTTEQRGTS*RSLVKQLRAWQP  4292

Range 4: 4056 to 4289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 71/78(91%) 0/78(0%) Minus/Minus
Query        4  LPRSQLFHE*TS*SAPLFCSVPSCCLVPIGCPATY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPR  237
                LPRSQLFHE*TS*SAPLFCSVPSCCLV IGCP TY*MSNPPREKSKVLFLQSRNL*FLSSHQ  Q*  QRS GVHHPR
Subject   4056  LPRSQLFHE*TS*SAPLFCSVPSCCLVLIGCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPR  4289

Range 5: 4054 to 4293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 71/80(89%) 0/80(0%) Plus/Plus
Query        2  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VAGQPIGTRQHDGTLQNRGALHDVHS*NSCERGSQ  241
                +RG*CTP ER* +H* +**EERNYRFRD*RKRTLLFSRGGFDIQ*V GQPI TRQHDGTLQNRGALHDVHS*NSCERGS+
Subject   4054  MRG*CTPPER*RNH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQPISTRQHDGTLQNRGALHDVHS*NSCERGSR  4293

Range 6: 4153 to 4290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query      101  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSRHLLNVESTTREE*  238
                AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLS HLLNVESTTREE*
Subject   4153  AATLAAVSRVNVMKCPSVL*CAIVLPRTNWLSHHLLNVESTTREE*  4290

Range 7: 4054 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/10(90%) 0/10(0%) Minus/Minus
Query        2  TL*WRTSSSH  31
                TL WRTSSSH
Subject   4054  TLWWRTSSSH  4083

Nucleotide Sequence (431 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
431

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
305.8 1598.4 25% 2.022e-81 92% AJ278854.1
305.8 1656.6 25% 2.022e-81 97% X97704.2
305.8 1578.7 25% 2.022e-81 89% KJ161173.1
305.8 1564.5 25% 2.022e-81 90% KJ161175.1
305.8 1520.5 25% 2.022e-81 85% KJ161176.1

Alignments

Lettuce mosaic virus (Isolate AF199) mRNA for polyprotein gene

Sequence ID: AJ278854.1 Length: 10080 Number of Matches: 7

Range 1: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.8 bits(661) 0.0 127/129(98%) 0/129(0%) Plus/Plus
Query       43  VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  429
                VW  INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG
Subject   7376  VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  7762

Range 2: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 120/129(93%) 0/129(0%) Minus/Minus
Query       43  SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN  429
                SFFGFQKRVAI+DAHCYRCGVFHDVFCECFSVQAALLVGSHQWF+E LFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTC+PFVLFGLKLYCV E*VCH*FVYFEGF WGTID+IY  PN
Subject   7376  SFFGFQKRVAINDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFKEFLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCEPFVLFGLKLYCVPE*VCH*FVYFEGFPWGTIDEIYAPPN  7762

Range 3: 7378 to 7764 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
275.5 bits(595) 0.0 120/129(93%) 0/129(0%) Plus/Plus
Query       45  LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS  431
                LG HKS+Q*YPK TLQNKQISDR IR RSTVSIQTRRMV KSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKG+L TTDGSLPEEPLEQRSIHKRHHEILHTDNSGHR LRHVFESRRRS
Subject   7378  LGGHKSHQ*YPKGTLQNKQISDRLIRGRSTVSIQTRRMVRKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGIL*TTDGSLPEEPLEQRSIHKRHHEILHTDNSGHR*LRHVFESRRRS  7764

Range 4: 7377 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
268.2 bits(579) 0.0 120/129(93%) 0/129(0%) Plus/Plus
Query       44  FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE  430
                FG  *I SIVPQ NPSK*TN**QTYS TQYSFNPNKTNG QVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKR+S NH*WEPTRRAA*TEKHSQKTS*NTPHR*QWAS IATRF*KPKKE
Subject   7377  FGGA*ISSIVPQGNPSK*TN**QTYSGTQYSFNPNKTNGSQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRNSLNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASLIATRF*KPKKE  7763

Range 5: 7375 to 7761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.2 bits(566) 0.0 125/129(97%) 0/129(0%) Minus/Minus
Query       42  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT  428
                PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM  QT
Subject   7375  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT  7761

Range 6: 7377 to 7637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 80/87(92%) 0/87(0%) Minus/Minus
Query       44  VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK  304
                VV*R PFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDL+TIRLVWIETVLR RI LSLICLF*RV LGYY**DL  PK
Subject   7377  VV*RIPFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLRTIRLVWIETVLRPRISLSLICLF*RVPLGYY**DLCPPK  7637

Range 7: 7704 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query      371  LLLRLSKTCRNRRCPLLSVW  430
                LLLRLSKTCRN+RCPLLSVW
Subject   7704  LLLRLSKTCRNQRCPLLSVW  7763

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 7

Range 1: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.8 bits(661) 0.0 127/129(98%) 0/129(0%) Plus/Plus
Query       43  VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  429
                VW  INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG
Subject   7376  VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  7762

Range 2: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
300.7 bits(650) 0.0 126/129(98%) 0/129(0%) Minus/Minus
Query       43  SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN  429
                SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFEELLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTID+IY  PN
Subject   7376  SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFEELLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDEIYAPPN  7762

Range 3: 7378 to 7764 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
296.2 bits(640) 0.0 126/129(98%) 0/129(0%) Plus/Plus
Query       45  LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS  431
                LG HKS+Q*YPKRTLQNKQISDR IRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS
Subject   7378  LGGHKSHQ*YPKRTLQNKQISDRLIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS  7764

Range 4: 7377 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
284.2 bits(614) 0.0 126/129(98%) 0/129(0%) Plus/Plus
Query       44  FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE  430
                FG  *I SIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE
Subject   7377  FGGA*ISSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE  7763

Range 5: 7375 to 7761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.2 bits(566) 0.0 125/129(97%) 0/129(0%) Minus/Minus
Query       42  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT  428
                PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM  QT
Subject   7375  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT  7761

Range 6: 7377 to 7637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 84/87(97%) 0/87(0%) Minus/Minus
Query       44  VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK  304
                VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLRLRI LSLICLF*RVLLGYY**DL  PK
Subject   7377  VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLRLRISLSLICLF*RVLLGYY**DLCPPK  7637

Range 7: 7704 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 20/20(100%) 0/20(0%) Minus/Minus
Query      371  LLLRLSKTCRNRRCPLLSVW  430
                LLLRLSKTCRNRRCPLLSVW
Subject   7704  LLLRLSKTCRNRRCPLLSVW  7763

Lettuce mosaic virus isolate 13, complete genome

Sequence ID: KJ161173.1 Length: 10080 Number of Matches: 7

Range 1: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.8 bits(661) 0.0 127/129(98%) 0/129(0%) Plus/Plus
Query       43  VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  429
                VW  INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG
Subject   7376  VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  7762

Range 2: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
289.7 bits(626) 0.0 119/129(92%) 0/129(0%) Minus/Minus
Query       43  SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN  429
                SFFGFQKRVAI+DAHCYRCGVFHDVFCECFSVQAALLVGSHQWF+E LFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTC+PFVLFGLKLYCV E*VCH*FVYFEGF WG ID+IY  PN
Subject   7376  SFFGFQKRVAINDAHCYRCGVFHDVFCECFSVQAALLVGSHQWFKEFLFLFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCEPFVLFGLKLYCVPE*VCH*FVYFEGFPWGAIDEIYAPPN  7762

Range 3: 7378 to 7764 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
268.7 bits(580) 0.0 117/129(91%) 0/129(0%) Plus/Plus
Query       45  LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS  431
                LG HKS+Q*+PK TLQNKQISDR IR RSTVSIQTRRMV KSIERQLESSGEEHKPTRNKAHSQG*VHDV* IPANTRRGKG+L T DGSLPEEPLEQRSIHKRHHEILHTDNSGHR LRHVFESRRRS
Subject   7378  LGGHKSHQ*HPKGTLQNKQISDRLIRGRSTVSIQTRRMVRKSIERQLESSGEEHKPTRNKAHSQG*VHDV*VIPANTRRGKGIL*TIDGSLPEEPLEQRSIHKRHHEILHTDNSGHR*LRHVFESRRRS  7764

Range 4: 7377 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.4 bits(575) 0.0 119/129(92%) 0/129(0%) Plus/Plus
Query       44  FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE  430
                FG  *I SI PQ NPSK*TN**QTYS TQYSFNPNKTNG QVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKR+S NH*WEPTRRAA*TEKHSQKTS*NTPHR*QWAS IATRF*KPKKE
Subject   7377  FGGA*ISSIAPQGNPSK*TN**QTYSGTQYSFNPNKTNGSQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRNSLNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASLIATRF*KPKKE  7763

Range 5: 7375 to 7761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.9 bits(563) 0.0 123/129(95%) 0/129(0%) Minus/Minus
Query       42  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT  428
                PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*API+GLKNSFSSSCVCRY+SNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM  QT
Subject   7375  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APINGLKNSFSSSCVCRYNSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT  7761

Range 6: 7377 to 7637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.7 bits(292) 0.0 77/87(89%) 0/87(0%) Minus/Minus
Query       44  VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK  304
                +V*R PFPLRVFAGI QTSCTYP*LCALLRVGLCSSPLLSSCLSIDL+TIRLVWIETVLR RI LSLICLF*RV LG Y**DL  PK
Subject   7377  MV*RIPFPLRVFAGITQTSCTYP*LCALLRVGLCSSPLLSSCLSIDLRTIRLVWIETVLRPRISLSLICLF*RVPLGCY**DLCPPK  7637

Range 7: 7704 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query      371  LLLRLSKTCRNRRCPLLSVW  430
                LLLRLSKTCRN+RCPLLSVW
Subject   7704  LLLRLSKTCRNQRCPLLSVW  7763

Lettuce mosaic virus isolate CL117, complete genome

Sequence ID: KJ161175.1 Length: 10080 Number of Matches: 7

Range 1: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.8 bits(661) 0.0 127/129(98%) 0/129(0%) Plus/Plus
Query       43  VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  429
                VW  INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG
Subject   7376  VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  7762

Range 2: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
286.5 bits(619) 0.0 118/129(91%) 0/129(0%) Minus/Minus
Query       43  SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN  429
                SFFGFQKRVAIDDAHCYRCGVFH+VFCECFSVQAALL+GSHQWFEE LF FVCLQV*LKHHALTL CVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCV E*VCH*FVY EGF WGTID+IY  PN
Subject   7376  SFFGFQKRVAIDDAHCYRCGVFHNVFCECFSVQAALLIGSHQWFEEFLFFFVCLQV*LKHHALTLYCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVPE*VCH*FVYLEGFPWGTIDEIYAPPN  7762

Range 3: 7378 to 7764 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
271.4 bits(586) 0.0 117/129(91%) 0/129(0%) Plus/Plus
Query       45  LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS  431
                LG HKS+Q*YPK TLQ+KQISDR IR RSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHS+G*VHDV*AIPANTRR KG+LQTTDGSL EEPLEQRSIHKRH+EILHTDNSGHRRLRHV ESRRRS
Subject   7378  LGGHKSHQ*YPKGTLQDKQISDRLIRGRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSKG*VHDV*AIPANTRRRKGILQTTDGSLSEEPLEQRSIHKRHYEILHTDNSGHRRLRHVSESRRRS  7764

Range 4: 7377 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
264.5 bits(571) 0.0 118/129(91%) 0/129(0%) Plus/Plus
Query       44  FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE  430
                FG  *I SIVPQ NPS+*TN**QTYS TQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQ RVSA*CLSYTCKHTK+KR+SSNH*WEP RRAA*TEKHSQKT *NTPHR*QWASSIATRF*KPKKE
Subject   7377  FGGA*ISSIVPQGNPSR*TN**QTYSGTQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQ*RVSA*CLSYTCKHTKKKRNSSNH*WEPIRRAA*TEKHSQKTL*NTPHR*QWASSIATRF*KPKKE  7763

Range 5: 7375 to 7761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.3 bits(540) 0.0 121/129(94%) 0/129(0%) Minus/Minus
Query       42  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT  428
                PSSAF+NVSQSTMPTVIGVEYF+MSFVNASLFKRLF *APISGLKNSFSSSCVCRYSSNIMHLP TVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM  QT
Subject   7375  PSSAFRNVSQSTMPTVIGVEYFIMSFVNASLFKRLF**APISGLKNSFSSSCVCRYSSNIMHLPFTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT  7761

Range 6: 7377 to 7637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 78/87(90%) 0/87(0%) Minus/Minus
Query       44  VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK  304
                VV*R PF LRVFAGIAQTSCTYP LCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLR RI LSLICL *RV LGYY**DL  PK
Subject   7377  VV*RIPFLLRVFAGIAQTSCTYPLLCALLRVGLCSSPLLSSCLSIDLQTIRLVWIETVLRPRISLSLICLS*RVPLGYY**DLCPPK  7637

Range 7: 7704 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query      371  LLLRLSKTCRNRRCPLLSVW  430
                LLLRLS+TCRNRRCPLLSVW
Subject   7704  LLLRLSETCRNRRCPLLSVW  7763

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 7

Range 1: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.8 bits(661) 0.0 127/129(98%) 0/129(0%) Plus/Plus
Query       43  VWVAINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  429
                VW  INLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG
Subject   7376  VWGGINLINSTPREPFKINKLVTDLFGDAVQFQSKQDEWFASQLKGNLKAVGKSTSQLVTKHTVKGKCMMFELYLQTHEEEKEFFKPLMGAYQKSRLNREAFTKDIMKYSTPITVGIVDCDTFLKAEEG  7762

Range 2: 7376 to 7762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 112/129(87%) 0/129(0%) Minus/Minus
Query       43  SFFGFQKRVAIDDAHCYRCGVFHDVFCECFSVQAALLVGSHQWXXXXXXXFVCLQV*LKHHALTLDCVLCYELACALPHCFQVAFQLTCKPFVLFGLKLYCVSE*VCH*FVYFEGFSWGTIDKIYGDPN  429
                SFFG QKRVAIDDAHCYRCGVFHDV CE FSVQAALLVGSHQWFEE LFLFVCLQV*LKHHAL L+CVLC+ELACALPHCFQVAFQLTC+PFVLFGLKL+CV +*VC+*FVYFE FSW TID+IY  PN
Subject   7376  SFFGLQKRVAIDDAHCYRCGVFHDVLCERFSVQAALLVGSHQWFEEFLFLFVCLQV*LKHHALALNCVLCHELACALPHCFQVAFQLTCEPFVLFGLKLHCVPK*VCY*FVYFERFSWSTIDEIYAPPN  7762

Range 3: 7375 to 7761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.2 bits(566) 0.0 125/129(97%) 0/129(0%) Minus/Minus
Query       42  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNXXXXXXXXXXXSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNRSVTNLFILKGSLGVLLIRFMATQT  428
                PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPN+SVTNLFILKGSLGVLL+RFM  QT
Subject   7375  PSSAFKNVSQSTMPTVIGVEYFMMSFVNASLFKRLFW*APISGLKNSFSSSCVCRYSSNIMHLPLTVCFVTSWLVLFPTAFKLPFN*LANHSSCLD*NCTASPNKSVTNLFILKGSLGVLLMRFMPPQT  7761

Range 4: 7378 to 7764 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.0 bits(559) 0.0 112/129(87%) 0/129(0%) Plus/Plus
Query       45  LGRHKSYQ*YPKRTLQNKQISDRPIRRRSTVSIQTRRMVCKSIERQLESSGEEHKPTRNKAHSQG*VHDV*AIPANTRRGKGVLQTTDGSLPEEPLEQRSIHKRHHEILHTDNSGHRRLRHVFESRRRS  431
                LG HKS+Q*Y KRT QNKQIS+R I  RS VSIQTRRMV KSIERQLESSGEEHKPTR+KAHS G VHDV*AIPANTRRGKG+LQTTDGSLPEEPLEQRS+HK HHEILHTDNSGHRRLRHVFE RRRS
Subject   7378  LGGHKSHQ*YSKRTFQNKQISNRLIWGRSAVSIQTRRMVRKSIERQLESSGEEHKPTRDKAHS*GQVHDV*AIPANTRRGKGILQTTDGSLPEEPLEQRSVHKGHHEILHTDNSGHRRLRHVFEGRRRS  7764

Range 5: 7377 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.9 bits(539) 0.0 114/129(88%) 0/129(0%) Plus/Plus
Query       44  FGSP*ILSIVPQENPSK*TN**QTYSETQYSFNPNKTNGLQVN*KAT*KQWGRAQANS*QSTQSRVSA*CLSYTCKHTKRKRSSSNH*WEPTRRAA*TEKHSQKTS*NTPHR*QWASSIATRF*KPKKE  430
                FG  *I SIV QEN SK*TN**QTY  TQ SFNPNKTNG QVN*KAT*KQWGRAQANS*QSTQ R SA*CLSYTCKHTKRKR+SSNH*WEPTRRAA*TEK SQ+TS*NTPHR*QWASSIATRF*+PKKE
Subject   7377  FGGA*ISSIVLQENLSK*TN**QTYLGTQCSFNPNKTNGSQVN*KAT*KQWGRAQANS*QSTQLRASA*CLSYTCKHTKRKRNSSNH*WEPTRRAA*TEKRSQRTS*NTPHR*QWASSIATRF*RPKKE  7763

Range 6: 7377 to 7637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 74/87(85%) 0/87(0%) Minus/Minus
Query       44  VV*RTPFPLRVFAGIAQTSCTYP*LCALLRVGXXXXXXXXXXXSIDLQTIRLVWIETVLRLRIGLSLICLF*RVLLGYY**DLWRPK  304
                VV*R PFPLRVFAGIAQTSCT P*LCAL RVGLCSSPLLSSCLSIDL+TIRLVWIET LR +I L LICLF*+VLL YY**DL  PK
Subject   7377  VV*RIPFPLRVFAGIAQTSCTCP*LCALSRVGLCSSPLLSSCLSIDLRTIRLVWIETALRPQISLLLICLF*KVLLEYY**DLCPPK  7637

Range 7: 7704 to 7763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 19/20(95%) 0/20(0%) Minus/Minus
Query      371  LLLRLSKTCRNRRCPLLSVW  430
                LLLR SKTCRNRRCPLLSVW
Subject   7704  LLLRPSKTCRNRRCPLLSVW  7763

Nucleotide Sequence (176 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
18
36
54
72
90
108
126
144
162
176

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
128.0 671.3 39% 6.904e-29 87% X97704.2
128.0 658.9 39% 6.904e-29 85% KM016821.1
128.0 585.1 28% 6.904e-29 72% KJ161174.1
128.0 590.6 32% 6.904e-29 74% KJ161175.1
128.0 630.5 39% 6.904e-29 80% KJ161176.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 51/54(94%) 0/54(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT  163
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK   HT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT  1492

Range 2: 1330 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.2 bits(245) 0.0 47/47(100%) 0/47(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH  141
                RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH
Subject   1330  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH  1470

Range 3: 1331 to 1468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 46/46(100%) 0/46(0%) Minus/Minus
Query        2  VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  139
                VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN
Subject   1331  VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  1468

Range 4: 1332 to 1469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 46/46(100%) 0/46(0%) Minus/Minus
Query        3  CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  140
                CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q
Subject   1332  CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  1469

Range 5: 1332 to 1493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 47/54(87%) 0/54(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP  164
                LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTT  +  + P
Subject   1332  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIP  1493

Range 6: 1360 to 1473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 38/38(100%) 0/38(0%) Minus/Minus
Query       31  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  144
                GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1473

Lettuce mosaic virus isolate Forte Lavras MG polyprotein gene, partial cds

Sequence ID: KM016821.1 Length: 2697 Number of Matches: 6

Range 1: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 51/54(94%) 0/54(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT  163
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK   HT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT  1492

Range 2: 1330 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 46/47(98%) 0/47(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH  141
                RC*G GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH
Subject   1330  RC*GEGRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH  1470

Range 3: 1331 to 1468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query        2  VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  139
                VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYP PNN
Subject   1331  VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPPPNN  1468

Range 4: 1332 to 1469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 45/46(98%) 0/46(0%) Minus/Minus
Query        3  CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  140
                CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLP P*Q
Subject   1332  CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPSP*Q  1469

Range 5: 1332 to 1493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 46/54(85%) 0/54(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP  164
                LLG G*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTT  +  + P
Subject   1332  LLGGG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTPQRTYSIP  1493

Range 6: 1360 to 1473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 38/38(100%) 0/38(0%) Minus/Minus
Query       31  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  144
                GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1473

Lettuce mosaic virus isolate Br6, complete genome

Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 51/54(94%) 0/54(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT  163
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK   HT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT  1492

Range 2: 1330 to 1491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 39/54(72%) 0/54(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHSQRSQTH  162
                RC*G GRW*S+R  + GH LHH  YGSIQRR TKLLERILNLFHAQHS+    H
Subject   1330  RC*GEGRW*SHRLTEQGHALHHTSYGSIQRRCTKLLERILNLFHAQHSKGHTPH  1491

Range 3: 1360 to 1473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 37/38(97%) 0/38(0%) Minus/Minus
Query       31  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  144
                GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCES+
Subject   1360  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESM  1473

Range 4: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 40/54(74%) 0/54(0%) Minus/Minus
Query        2  GVFGTFGSVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  163
                GV     SVVHETS*VSVPEVSC+VAVLNHT+ DGV DL L +Y+FTIYP PNN
Subject   1331  GVEYVLWSVVHETS*VSVPEVSCNVAVLNHTMCDGVRDLAL*VYDFTIYPPPNN  1492

Range 5: 1332 to 1493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 39/54(72%) 0/54(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP  164
                LLG G*MVK *  + RS TPS  VWFNTAT HETSGTDTQLVSCTTL +  +TP
Subject   1332  LLGGG*MVKS*THRARSRTPSHIVWFNTATLHETSGTDTQLVSCTTLQRTYSTP  1493

Range 6: 1332 to 1472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 38/47(81%) 0/47(0%) Minus/Minus
Query        3  ECCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  143
                ECCA*NKLSIRSRSFV+RRCIEPY  *WS *P   +L*LHHLP P*Q
Subject   1332  ECCA*NKLSIRSRSFVQRRCIEPYDV*WSA*PCSVSL*LHHLPSP*Q  1472

Lettuce mosaic virus isolate CL117, complete genome

Sequence ID: KJ161175.1 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 51/54(94%) 0/54(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT  163
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK   HT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT  1492

Range 2: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 40/54(74%) 0/54(0%) Minus/Minus
Query        2  GVFGTFGSVVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  163
                GV   F  VVHETS*+SVPEVSCD+ VLNHTV DGVCDL LRIY+FTIY  P+N
Subject   1331  GVEYVFWGVVHETS*ISVPEVSCDITVLNHTVCDGVCDLALRIYHFTIYSPPDN  1492

Range 3: 1330 to 1491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 40/54(74%) 0/54(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQHSQRSQTH  162
                RC G  RW*S RFAK GHTLHH PYGSIQ  RTKLLERI NLFHAQH +R   H
Subject   1330  RCQGESRW*SDRFAKQGHTLHHTPYGSIQ*CRTKLLERIFNLFHAQHPKRHTPH  1491

Range 4: 1360 to 1473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 38/38(100%) 0/38(0%) Minus/Minus
Query       31  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  144
                GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1473

Range 5: 1332 to 1469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 38/46(83%) 0/46(0%) Minus/Minus
Query        3  CCA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  140
                CCA*NKL+IRSRSFVR  CIEPYG *WSV*P FANL LHHL  P*Q
Subject   1332  CCA*NKLNIRSRSFVRHHCIEPYGV*WSV*PCFANLSLHHLLSP*Q  1469

Range 6: 1332 to 1493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 40/54(74%) 0/54(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP  164
                L G  *MVK *IRK RSHTPS TVWFNT  SHETSGTD QLVSCTT  K  +TP
Subject   1332  LSGGE*MVK**IRKARSHTPSHTVWFNTVMSHETSGTDIQLVSCTTPQKTYSTP  1493

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6

Range 1: 1331 to 1492 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 51/54(94%) 0/54(0%) Plus/Plus
Query        2  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKGPKHT  163
                VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPK   HT
Subject   1331  VVRGRVDGEVIDSQSKVTHSITHRMVQYSDVARNFWNGYSTCFMHNTPKDILHT  1492

Range 2: 1331 to 1468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 42/46(91%) 0/46(0%) Minus/Minus
Query        2  VVHETS*VSVPEVSCDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNN  139
                +VHETS*V VPEVSCDV VLNHTVRDGVCDLTLRIYNFTIYP PNN
Subject   1331  IVHETS*VPVPEVSCDVTVLNHTVRDGVCDLTLRIYNFTIYPPPNN  1468

Range 3: 1330 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 43/47(91%) 0/47(0%) Plus/Plus
Query        1  RC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRTKLLERILNLFHAQH  141
                RC*G GRW*SYRFAK*GHTLHHAPYGSIQ RRTKLLER+LNLFHAQ+
Subject   1330  RC*GEGRW*SYRFAK*GHTLHHAPYGSIQ*RRTKLLERVLNLFHAQY  1470

Range 4: 1332 to 1466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 42/45(93%) 0/45(0%) Minus/Minus
Query        3  CA*NKLSIRSRSFVRRRCIEPYGA*WSV*PYFANL*LHHLPYP*Q  137
                CA*NKLS RSRSFVRR CIEPYGA*WSV*PYFANL*LHHLP P*Q
Subject   1332  CA*NKLSTRSRSFVRRHCIEPYGA*WSV*PYFANL*LHHLPSP*Q  1466

Range 5: 1332 to 1493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 43/54(80%) 0/54(0%) Plus/Plus
Query        3  LLGVG*MVKL*IRKVRSHTPSRTVWFNTATSHETSGTDTQLVSCTTLPKVPNTP  164
                LLG G*MVKL*IRKVRSHTPSRTVWFNT TSHETSGT TQLVSCT   +  + P
Subject   1332  LLGGG*MVKL*IRKVRSHTPSRTVWFNTVTSHETSGTGTQLVSCTIPQRTYSIP  1493

Range 6: 1360 to 1473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 38/38(100%) 0/38(0%) Minus/Minus
Query       31  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  144
                GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI
Subject   1360  GVLCMKQVEYPFQKFRATSLY*TIRCVMECVTLLCESI  1473

Nucleotide Sequence (381 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
381

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
325.5 1661.9 25% 1.942e-87 98% X97705.1
325.5 1661.9 25% 1.942e-87 98% NC_003605.1
292.0 1400.7 26% 2.278e-77 77% KJ161187.1
292.0 1434.6 26% 2.278e-77 80% KJ161190.1
292.0 1434.6 26% 2.278e-77 80% KJ161191.1

Alignments

Lettuce mosaic virus (strain E) mRNA for polyprotein

Sequence ID: X97705.1 Length: 10080 Number of Matches: 6

Range 1: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
325.5 bits(704) 0.0 125/126(99%) 0/126(0%) Minus/Minus
Query        2  VGFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  379
                V FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD
Subject   5063  VRFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  5440

Range 2: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
302.1 bits(653) 0.0 124/125(99%) 0/125(0%) Plus/Plus
Query        1  HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI  375
                HP***APNDPV KEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI
Subject   5062  HP***APNDPVYKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI  5436

Range 3: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
294.8 bits(637) 0.0 124/125(99%) 0/125(0%) Minus/Minus
Query        1  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM  375
                DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFF YRIIRCSLSRM
Subject   5062  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFVYRIIRCSLSRM  5436

Range 4: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN  379
                ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+
Subject   5063  ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD  5440

Range 5: 5064 to 5441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        3  SLIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSXXXXXXXXXXXXXXAS*DSSS*KNPT  380
                SLIVSTE*SG+QRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KN T
Subject   5064  SLIVSTE*SGIQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KNRT  5441

Range 6: 5064 to 5345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 93/94(99%) 0/94(0%) Minus/Minus
Query        3  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQG  284
                TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSL+TGSFGAHYQG
Subject   5064  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLYTGSFGAHYQG  5345

Lettuce mosaic virus, complete genome

Sequence ID: NC_003605.1 Length: 10080 Number of Matches: 6

Range 1: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
325.5 bits(704) 0.0 125/126(99%) 0/126(0%) Minus/Minus
Query        2  VGFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  379
                V FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD
Subject   5063  VRFFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  5440

Range 2: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
302.1 bits(653) 0.0 124/125(99%) 0/125(0%) Plus/Plus
Query        1  HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI  375
                HP***APNDPV KEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI
Subject   5062  HP***APNDPVYKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERI  5436

Range 3: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
294.8 bits(637) 0.0 124/125(99%) 0/125(0%) Minus/Minus
Query        1  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM  375
                DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFF YRIIRCSLSRM
Subject   5062  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFVYRIIRCSLSRM  5436

Range 4: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN  379
                ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+
Subject   5063  ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD  5440

Range 5: 5064 to 5441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        3  SLIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSXXXXXXXXXXXXXXAS*DSSS*KNPT  380
                SLIVSTE*SG+QRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KN T
Subject   5064  SLIVSTE*SGIQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLWSTWYTTTVQYTQQLTAS*DSSS*KNRT  5441

Range 6: 5064 to 5345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 93/94(99%) 0/94(0%) Minus/Minus
Query        3  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQG  284
                TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSL+TGSFGAHYQG
Subject   5064  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTRRLLLLRLMLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLYTGSFGAHYQG  5345

Lettuce mosaic virus isolate Ham6, complete genome

Sequence ID: KJ161187.1 Length: 10080 Number of Matches: 6

Range 1: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN  379
                ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+
Subject   5063  ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD  5440

Range 2: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
290.2 bits(627) 0.0 121/125(97%) 0/125(0%) Minus/Minus
Query        1  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM  375
                DSFNLNCL+RLLIAGCTVPSWCT+STIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPAL RPTLPTLWIRSPYVILFF YRIIRCSLSRM
Subject   5062  DSFNLNCLKRLLIAGCTVPSWCTKSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALFRPTLPTLWIRSPYVILFFVYRIIRCSLSRM  5436

Range 3: 5063 to 5434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.0 bits(583) 0.0 100/124(81%) 0/124(0%) Minus/Minus
Query        2  FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  373
                F QLELSQEAVNCWVYCTVVVYQV+HKE GQ KLLHRPCLSYC +A++ CTH+ACHDR+ VCETQ+G FCCD*CWYFFRPH SA Y +G TSFV+PNPSHSLDSL IC+TFLCIPDHSVL IK+
Subject   5063  FLQLELSQEAVNCWVYCTVVVYQVNHKEGGQFKLLHRPCLSYCAIAKHTCTHIACHDREPVCETQKGRFCCD*CWYFFRPHLSAPYSDGRTSFVSPNPSHSLDSLAICNTFLCIPDHSVLAIKN  5434

Range 4: 5062 to 5439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.1 bits(498) 0.0 98/126(78%) 0/126(0%) Plus/Plus
Query        1  HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERIQ  378
                H ** APNDPV KEKY+IW ANPKSGKGWA+QSWF H +R+H*+GDGRNTSINRNRS L VFHIR  CHDKQ EYK   QL+SKT TDDAKV* VP LYG  GTPRRYSTPSN*QP ETVQVE I+
Subject   5062  HS**RAPNDPVYKEKYYIWRANPKSGKGWAKQSWFCHPNREH*DGDGRNTSINRNRSGLFVFHIRAPCHDKQCEYKCAWQLHSKTSTDDAKV*TVPLLYG*LGTPRRYSTPSN*QPLETVQVEGIR  5439

Range 5: 5067 to 5360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.0 bits(369) 0.0 75/98(77%) 0/98(0%) Plus/Plus
Query        6  LIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLW  299
                LI STE*SG+QRKV HM SESKEWEGLG TKLV P  * AL+WGRKKYQHQSQQK+P CVSHT  LS*QA *VQ   A  Q*D+HGRCKSL+CP SLW
Subject   5067  LIASTE*SGIQRKVLHMASESKEWEGLGETKLVLPSE*GALRWGRKKYQHQSQQKRPFCVSHTGSLS*QAM*VQVCLAIAQ*DKHGRCKSLNCPPSLW  5360

Range 6: 5067 to 5345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 72/93(77%) 0/93(0%) Minus/Minus
Query        6  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQ  284
                T QTFASSV VLL +C+  LYS CLS*Q  RM*NT+R LLLRLMLVFLPSP QC L  W NQLC AQPFPLFGFA HM*YFSL+TGSFGA YQ
Subject   5067  TVQTFASSVLVLLCNCQAHLYSHCLS*QGARM*NTKRPLLLRLMLVFLPSPSQCSLFGWQNQLCFAQPFPLFGFARHM*YFSLYTGSFGARYQ  5345

Lettuce mosaic virus isolate Tn516, complete genome

Sequence ID: KJ161190.1 Length: 10080 Number of Matches: 6

Range 1: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN  379
                ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+
Subject   5063  ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD  5440

Range 2: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
290.2 bits(627) 0.0 121/125(97%) 0/125(0%) Minus/Minus
Query        1  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM  375
                DSFNLNCL+RLLIAGCTVPSWCT+STIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPAL RPTLPTLWIRSPYVILFF YRIIRCSLSRM
Subject   5062  DSFNLNCLKRLLIAGCTVPSWCTKSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALFRPTLPTLWIRSPYVILFFVYRIIRCSLSRM  5436

Range 3: 5063 to 5434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
280.6 bits(606) 0.0 103/124(83%) 0/124(0%) Minus/Minus
Query        2  FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  373
                F QLELSQE VNCWVYCTVVVYQV+HKE GQ KLLHRPCLSYC +A+Y C H+ACHDRKSVCETQ+GCFCCD*CWYFFRPH  ASY +G TSFV+PNPSHSLDSL ICDTFLCIPDHSVL IK+
Subject   5063  FLQLELSQETVNCWVYCTVVVYQVNHKEGGQFKLLHRPCLSYCAIAKYTCAHIACHDRKSVCETQKGCFCCD*CWYFFRPHLGASYSDGRTSFVSPNPSHSLDSLAICDTFLCIPDHSVLAIKN  5434

Range 4: 5062 to 5439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.1 bits(509) 0.0 101/126(80%) 0/126(0%) Plus/Plus
Query        1  HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERIQ  378
                H ** APNDPV KEKYHIW ANPKSGKGWA+QSWF H +RKH +GDGRNTSINRNRSSL VFHIRTSCHDKQ E+K T QL+SKT TDDAKV* VP LYG  GTPRRYSTPSN*Q  ETVQVE I+
Subject   5062  HS**RAPNDPVYKEKYHIWRANPKSGKGWAKQSWFCHPNRKHRDGDGRNTSINRNRSSLFVFHIRTSCHDKQCEHKCTWQLHSKTSTDDAKV*TVPLLYG*LGTPRRYSTPSN*QSLETVQVEGIR  5439

Range 5: 5067 to 5360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 79/98(81%) 0/98(0%) Plus/Plus
Query        6  LIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLW  299
                LI STE*SG+QRKVSHM SESKEWEGLG TKLV P  *EA +WGRKKYQHQSQQKQP CVSHTDFLS*QA * Q Y A  Q*D+HGRCKSL+CP SLW
Subject   5067  LIASTE*SGIQRKVSHMASESKEWEGLGETKLVLPSE*EAPRWGRKKYQHQSQQKQPFCVSHTDFLS*QAM*AQVYLAIAQ*DKHGRCKSLNCPPSLW  5360

Range 6: 5067 to 5345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 75/93(81%) 0/93(0%) Minus/Minus
Query        6  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQ  284
                T QTFASSV VLL +C+V L S CLS*QEVRM*NT+RLLLLRLMLVFLPSP +CFL  W NQLC AQPFPLFGFA HM*YFSL+TGSFGA YQ
Subject   5067  TVQTFASSVLVLLCNCQVHLCSHCLS*QEVRM*NTKRLLLLRLMLVFLPSPSRCFLFGWQNQLCFAQPFPLFGFARHM*YFSLYTGSFGARYQ  5345

Lettuce mosaic virus isolate Tn516 ev, complete genome

Sequence ID: KJ161191.1 Length: 10080 Number of Matches: 6

Range 1: 5063 to 5440 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.0 bits(631) 0.0 124/126(98%) 0/126(0%) Plus/Plus
Query        2  ILDSEHRMIRYAKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESN  379
                ILDSEHRMIRY KKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKES+
Subject   5063  ILDSEHRMIRYTKKSITYGERIQRVGRVGRNKAGSAIRIGSTEMGTEEIPASIATEAAFLCFTYGLPVMTSNVSTSVLGNCTVRQARTMQKFELSPFFMVDLVHHDGTVHPAINSLLRQFKLKESD  5440

Range 2: 5062 to 5436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
290.2 bits(627) 0.0 121/125(97%) 0/125(0%) Minus/Minus
Query        1  DSFNLNCLRRLLIAGCTVPSWCTRSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALLRPTLPTLWIRSPYVILFFAYRIIRCSLSRM  375
                DSFNLNCL+RLLIAGCTVPSWCT+STIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPAL RPTLPTLWIRSPYVILFF YRIIRCSLSRM
Subject   5062  DSFNLNCLKRLLIAGCTVPSWCTKSTIKKGDSSNFCIVRACLTVQLPSTLVLTLLVMTGSPYVKHKKAASVAIDAGISSVPISVLPIRMAEPALFRPTLPTLWIRSPYVILFFVYRIIRCSLSRM  5436

Range 3: 5063 to 5434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
280.6 bits(606) 0.0 103/124(83%) 0/124(0%) Minus/Minus
Query        2  FFQLELSQEAVNCWVYCTVVVYQVDHKERGQLKLLHRPCLSYCTVAEYACTHVACHDRKSVCETQEGCFCCD*CWYFFRPHFSASYPNG*TSFVAPNPSHSLDSLTICDTFLCIPDHSVLTIKD  373
                F QLELSQE VNCWVYCTVVVYQV+HKE GQ KLLHRPCLSYC +A+Y C H+ACHDRKSVCETQ+GCFCCD*CWYFFRPH  ASY +G TSFV+PNPSHSLDSL ICDTFLCIPDHSVL IK+
Subject   5063  FLQLELSQETVNCWVYCTVVVYQVNHKEGGQFKLLHRPCLSYCAIAKYTCAHIACHDRKSVCETQKGCFCCD*CWYFFRPHLGASYSDGRTSFVSPNPSHSLDSLAICDTFLCIPDHSVLAIKN  5434

Range 4: 5062 to 5439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.1 bits(509) 0.0 101/126(80%) 0/126(0%) Plus/Plus
Query        1  HP***APNDPVCKEKYHIW*ANPKSGKGWAQQSWFSHSDRKH*NGDGRNTSINRNRSSLLVFHIRTSCHDKQREYKRTRQLYSKTGTDDAKV*AVPFLYGRPGTPRRYSTPSN*QPPETVQVERIQ  378
                H ** APNDPV KEKYHIW ANPKSGKGWA+QSWF H +RKH +GDGRNTSINRNRSSL VFHIRTSCHDKQ E+K T QL+SKT TDDAKV* VP LYG  GTPRRYSTPSN*Q  ETVQVE I+
Subject   5062  HS**RAPNDPVYKEKYHIWRANPKSGKGWAKQSWFCHPNRKHRDGDGRNTSINRNRSSLFVFHIRTSCHDKQCEHKCTWQLHSKTSTDDAKV*TVPLLYG*LGTPRRYSTPSN*QSLETVQVEGIR  5439

Range 5: 5067 to 5360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 79/98(81%) 0/98(0%) Plus/Plus
Query        6  LIVSTE*SGMQRKVSHMVSESKEWEGLGATKLVQPFG*EALKWGRKKYQHQSQQKQPSCVSHTDFLS*QAT*VQAYSATVQ*DRHGRCKSLSCPLSLW  299
                LI STE*SG+QRKVSHM SESKEWEGLG TKLV P  *EA +WGRKKYQHQSQQKQP CVSHTDFLS*QA * Q Y A  Q*D+HGRCKSL+CP SLW
Subject   5067  LIASTE*SGIQRKVSHMASESKEWEGLGETKLVLPSE*EAPRWGRKKYQHQSQQKQPFCVSHTDFLS*QAM*AQVYLAIAQ*DKHGRCKSLNCPPSLW  5360

Range 6: 5067 to 5345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 75/93(81%) 0/93(0%) Minus/Minus
Query        6  TAQTFASSVPVLLYSCRVRLYSRCLS*QEVRM*NTXXXXXXXXXLVFLPSPFQCFLSEWLNQLCCAQPFPLFGFAHHM*YFSLHTGSFGAHYQ  284
                T QTFASSV VLL +C+V L S CLS*QEVRM*NT+RLLLLRLMLVFLPSP +CFL  W NQLC AQPFPLFGFA HM*YFSL+TGSFGA YQ
Subject   5067  TVQTFASSVLVLLCNCQVHLCSHCLS*QEVRM*NTKRLLLLRLMLVFLPSPSRCFLFGWQNQLCFAQPFPLFGFARHM*YFSLYTGSFGARYQ  5345

Nucleotide Sequence (203 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
21
42
63
84
105
126
147
168
189
203

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
156.2 787.6 32% 3.986e-37 88% AJ306288.1
154.8 813.7 33% 1.026e-36 93% X97704.2
154.8 715.7 32% 1.026e-36 78% KJ161174.1
154.8 737.2 32% 1.026e-36 81% KJ161176.1
154.8 698.2 33% 1.026e-36 77% KJ161178.1

Alignments

Lettuce mosaic virus complete genomic RNA, Yuhang isolate

Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.2 bits(337) 0.0 65/67(97%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWW N
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWDN  4201

Range 2: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 61/67(91%) 0/67(0%) Minus/Plus
Query        1  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST  201
                EVI CTGVYQSSNH*YLRARMMYA RAL RSL  LMRRKNL*ISRLKEKNFTLLAWWIRHSVSGG+T
Subject   4002  EVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGTT  4202

Range 3: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 60/67(90%) 0/67(0%) Plus/Minus
Query        2  VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS  202
                V PPLTECRIHHARRVKFFSFNLEIYRFFLLIK +NDL++AL+AYIILARRY**FEL**TPVH ITS
Subject   4001  VVPPLTECRIHHARRVKFFSFNLEIYRFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITS  4201

Range 4: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 59/67(88%) 0/67(0%) Plus/Minus
Query        1  G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  201
                G  TTY*MSNPPREKSKVLFLQSRNL*ILSSHQ  Q*S QRS GVHHPRT*ILMI*ALI+SCT NHF
Subject   4002  GCPTTY*MSNPPREKSKVLFLQSRNL*ILSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHF  4202

Range 5: 4000 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 60/67(90%) 0/67(0%) Minus/Plus
Query        3  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ  203
                EK*L VQE IKAQIISIYVRG*CTP ER* DH* +**EERIYRFRD*RKRTLLFSRGGFDIQ*VV Q
Subject   4000  EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERIYRFRD*RKRTLLFSRGGFDIQ*VVGQ  4200

Range 6: 4000 to 4074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 24/25(96%) 0/25(0%) Plus/Minus
Query      129  WRTSSSHVDTNDLSFDKLLYTQSLL  203
                WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  WRTSSSHVDTNDLSFDRLLYTQSLL  4074

Range 7: 4156 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 14/15(93%) 0/15(0%) Plus/Minus
Query        3  LIHHLLNVESTTREE  47
                L HHLLNVESTTREE
Subject   4156  LSHHLLNVESTTREE  4200

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.8 bits(334) 0.0 64/67(96%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN  4201

Range 2: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 63/67(94%) 0/67(0%) Minus/Plus
Query        1  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST  201
                EVIACTGVYQSSNH*YLRARMMYAIRAL RSL YLMRRK L*ISRLKEKNFTLLAWWIRHSVSGG+T
Subject   4002  EVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGGTT  4202

Range 3: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 62/67(93%) 0/67(0%) Plus/Minus
Query        2  VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS  202
                V PPLTECRIHHARRVKFFSFNLEIY FFLLIK*+NDL++ALMAYIILARRY**FEL**TPVHAITS
Subject   4001  VVPPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITS  4201

Range 4: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 62/67(93%) 0/67(0%) Plus/Minus
Query        1  G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  201
                G  TTY*MSNPPREKSKVLFLQSRNL* LSSHQI Q*S QRSDGVHHPRT*ILMI*ALINSCTRNHF
Subject   4002  GCPTTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHF  4202

Range 5: 4000 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 63/67(94%) 0/67(0%) Minus/Plus
Query        3  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ  203
                EK*LRVQEFIKAQIISIYVRG*CTPSER* DH* I**EER YRFRD*RKRTLLFSRGGFDIQ*VV Q
Subject   4000  EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VVGQ  4200

Range 6: 4000 to 4080 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 27/27(100%) 0/27(0%) Plus/Minus
Query      123  L*WRTSSSHVDTNDLSFDKLLYTQSLL  203
                L*WRTSSSHVDTNDLSFDKLLYTQSLL
Subject   4000  L*WRTSSSHVDTNDLSFDKLLYTQSLL  4080

Range 7: 4156 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 14/15(93%) 0/15(0%) Plus/Minus
Query        3  LIHHLLNVESTTREE  47
                L HHLLNVESTTREE
Subject   4156  LSHHLLNVESTTREE  4200

Lettuce mosaic virus isolate Br6, complete genome

Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.8 bits(334) 0.0 64/67(96%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN  4201

Range 2: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 55/67(82%) 0/67(0%) Plus/Minus
Query        2  VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS  202
                V PP  ECRIHHARRVKFFSFNLEIYRFFLLI+ IN+LI+AL+AYI+LARRY**F+L**TP+H ITS
Subject   4001  VVPPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIVLARRY**FKL**TPIHTITS  4201

Range 3: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 53/67(79%) 0/67(0%) Minus/Plus
Query        1  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST  201
                EVI C GVYQS NH*YLRAR MYA +ALMR LI  MRRK  *ISRLKEKNFTLLAWWIRHS +GG+T
Subject   4002  EVIVCIGVYQSLNH*YLRARTMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGGTT  4202

Range 4: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 53/67(79%) 0/67(0%) Plus/Minus
Query        1  G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  201
                G  T  *MSNPPREKSKVLFLQSRNL  LSSH+ DQ*SHQR  GVH PRT*ILMI*ALI+S T NHF
Subject   4002  GCPTIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHF  4202

Range 5: 4000 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 52/67(78%) 0/67(0%) Minus/Plus
Query        3  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ  203
                EK*L V E IKA IISIYVRG CTP +R**D+*S+ *EER  RFRD*RKRTLLFSRGGFDIQ +V Q
Subject   4000  EK*LCV*ESIKA*IISIYVRGRCTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMVGQ  4200

Range 6: 4000 to 4074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 24/25(96%) 0/25(0%) Plus/Minus
Query      129  WRTSSSHVDTNDLSFDKLLYTQSLL  203
                WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  WRTSSSHVDTNDLSFDRLLYTQSLL  4074

Range 7: 4156 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 14/15(93%) 0/15(0%) Plus/Minus
Query        3  LIHHLLNVESTTREE  47
                L HHLLNVESTTREE
Subject   4156  LSHHLLNVESTTREE  4200

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.8 bits(334) 0.0 64/67(96%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN  4201

Range 2: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.4 bits(276) 0.0 57/67(85%) 0/67(0%) Plus/Minus
Query        2  VDPPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS  202
                V PP  ECRIHHARRVKFFSFNLEIYRFFLLI+ IN+LI+AL+AYIILARRY**F+L**TPVH ITS
Subject   4001  VVPPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIILARRY**FKL**TPVHTITS  4201

Range 3: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 55/67(82%) 0/67(0%) Minus/Plus
Query        1  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGGST  201
                EVI CTGVYQS NH*YLRARMMYA +ALMR LI  MRRK  *ISRLKEKNFTLLAWWIRHS +GG+T
Subject   4002  EVIVCTGVYQSLNH*YLRARMMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGGTT  4202

Range 4: 4002 to 4202 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 55/67(82%) 0/67(0%) Plus/Minus
Query        1  G*STTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  201
                G  T  *MSNPPREKSKVLFLQSRNL  LSSH+ DQ*SHQR  GVHHPRT*ILMI*ALI+SCT NHF
Subject   4002  GCPTIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHHPRT*ILMI*ALIDSCTHNHF  4202

Range 5: 4000 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 54/67(81%) 0/67(0%) Minus/Plus
Query        3  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VVDQ  203
                EK*L VQE IKA IISIYVRG*CTP +R**D+*S+ *EER  RFRD*RKRTLLFSRGGFDIQ +V Q
Subject   4000  EK*LCVQESIKA*IISIYVRG*CTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMVGQ  4200

Range 6: 4000 to 4074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 24/25(96%) 0/25(0%) Plus/Minus
Query      129  WRTSSSHVDTNDLSFDKLLYTQSLL  203
                WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  WRTSSSHVDTNDLSFDRLLYTQSLL  4074

Range 7: 4156 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 14/15(93%) 0/15(0%) Plus/Minus
Query        3  LIHHLLNVESTTREE  47
                L HHLLNVESTTREE
Subject   4156  LSHHLLNVESTTREE  4200

Lettuce mosaic virus isolate CL281, complete genome

Sequence ID: KJ161178.1 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.8 bits(334) 0.0 64/67(96%) 0/67(0%) Minus/Plus
Query        2  RSDCVYRSLSKLKSLVSTCEDDVRHQSADEIIDLFDEKKESIDFEIEGKELYSSRVVDSTFSKWWIN  202
                RSDCVYRSLSKLKSLVSTCEDDVRHQS DEIIDLFDEKKE+IDFEIEGKELYSSRVVDSTFSKWW N
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWWDN  4201

Range 2: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 53/65(82%) 0/65(0%) Plus/Minus
Query        8  PPLTECRIHHARRVKFFSFNLEIYRFFLLIK*INDLISALMAYIILARRY**FEL**TPVHAITS  202
                PPL ECRIHHARRVKFFSFNLEIYRFFLLI+ +NDL++ L+A+IILARR **FEL**TPV+ ITS
Subject   4001  PPLAECRIHHARRVKFFSFNLEIYRFFLLIEKVNDLVNTLVAHIILARRN**FEL**TPVYTITS  4195

Range 3: 4002 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 52/65(80%) 0/65(0%) Minus/Plus
Query        7  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLIYLMRRKNL*ISRLKEKNFTLLAWWIRHSVSGG  201
                EVI  TGVYQSSNH*+LRARMM A R L RSL + MRRK  *ISRLKEKNFTLLAWWIRHS SGG
Subject   4002  EVIVYTGVYQSSNH*FLRARMMCATRVLTRSLTFSMRRKKR*ISRLKEKNFTLLAWWIRHSASGG  4196

Range 4: 4002 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 50/64(78%) 0/64(0%) Plus/Minus
Query       10  TTY*MSNPPREKSKVLFLQSRNL*ILSSHQIDQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  201
                TT *MSNPPREKSKVLFLQSRNL  LSSH+  Q*S Q S G HHPRT* LMI*ALI+SC  NHF
Subject   4002  TTC*MSNPPREKSKVLFLQSRNLSFLSSHRKGQ*SRQHSGGAHHPRT*KLMI*ALIDSCIHNHF  4193

Range 5: 4000 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 50/65(77%) 0/65(0%) Minus/Plus
Query        9  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*SI**EERIYRFRD*RKRTLLFSRGGFDIQ*VV  203
                +K*L +QE IKAQIIS YVRG*C P E * DH*   *EER  RFRD*RKRTLLFSRGGFDIQ VV
Subject   4000  KK*LCIQESIKAQIISFYVRG*CAPPEC*RDH*PFR*EERNDRFRD*RKRTLLFSRGGFDIQQVV  4194

Range 6: 4000 to 4074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 23/25(92%) 0/25(0%) Plus/Minus
Query      129  WRTSSSHVDTNDLSFDKLLYTQSLL  203
                WRTSSSHV+TNDLSFD+LLYTQSLL
Subject   4000  WRTSSSHVETNDLSFDRLLYTQSLL  4074

Range 7: 4156 to 4200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 14/15(93%) 0/15(0%) Plus/Minus
Query        3  LIHHLLNVESTTREE  47
                L HHLLNVESTTREE
Subject   4156  LSHHLLNVESTTREE  4200

Nucleotide Sequence (199 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
157.8 798.4 35% 1.197e-37 92% AJ515299.1
157.8 771.4 35% 1.197e-37 88% KF955619.1
157.8 789.7 35% 1.197e-37 91% KJ161179.1
157.8 836.4 35% 1.276e-37 98% X97704.2
157.8 715.0 35% 1.276e-37 78% KJ161174.1

Alignments

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 7

Range 1: 1143 to 1337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(339) 0.0 65/65(100%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   1143  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  1337

Range 2: 1144 to 1338 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 61/65(94%) 0/65(0%) Minus/Plus
Query        3  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  197
                EVI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG
Subject   1144  EVIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  1338

Range 3: 1143 to 1337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 61/65(94%) 0/65(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITS  198
                PPLTECRIHHARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH ITS
Subject   1143  PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTITS  1337

Range 4: 1144 to 1335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 59/64(92%) 0/64(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  197
                TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPRT*ILMI*ALI+SCT NHF
Subject   1144  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHF  1335

Range 5: 1142 to 1336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 60/65(92%) 0/65(0%) Minus/Plus
Query        5  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  199
                EK*L VQE IKAQIISIYVRG*CTP ER* DH*P+**EERNYRFRD*RKRTLLFSRGGFDIQ*VV
Subject   1142  EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  1336

Range 6: 1142 to 1225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Plus/Minus
Query      116  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  199
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   1142  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  1225

Range 7: 1298 to 1336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        5  HHLLNVESTTREE  43
                HHLLNVESTTREE
Subject   1298  HHLLNVESTTREE  1336

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(339) 0.0 65/65(100%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4005 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 58/64(91%) 0/64(0%) Minus/Plus
Query        3  VIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  194
                VI CTGVYQSSNH*YL ARMMYA RAL +SLT LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG
Subject   4005  VIVCTGVYQSSNH*YLHARMMYATRALTKSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  4196

Range 3: 4004 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 58/64(91%) 0/64(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAIT  195
                PPLTECRIHHARRVKFFSFNLEIYSFFLLIK VND +NAL+AYIILA RY**FEL**TPVH IT
Subject   4004  PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIILACRY**FEL**TPVHTIT  4195

Range 4: 4005 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 56/63(89%) 0/63(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH  194
                TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ GQ*  QRS GVHHPR *ILMI*ALI+SCT NH
Subject   4005  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPRM*ILMI*ALIDSCTHNH  4193

Range 5: 4000 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 57/65(88%) 0/65(0%) Minus/Plus
Query        5  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  199
                E+*L VQE IKAQIISIY+RG*CTP ER* +H*P+**EERNYRFRD*RKRTLLFSRGGFDIQ*VV
Subject   4000  EE*LCVQESIKAQIISIYMRG*CTPPER*RNH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  4194

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Plus/Minus
Query      116  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  199
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  4083

Range 7: 4156 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        5  HHLLNVESTTREE  43
                HHLLNVESTTREE
Subject   4156  HHLLNVESTTREE  4194

Lettuce mosaic virus isolate CL394, complete genome

Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(339) 0.0 65/65(100%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4005 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 60/64(94%) 0/64(0%) Minus/Plus
Query        3  VIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  194
                VI CTGVYQSSNH*YLRARMMYA RAL RSLT LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG
Subject   4005  VIVCTGVYQSSNH*YLRARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  4196

Range 3: 4004 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 60/64(94%) 0/64(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAIT  195
                PPLTECRIHHARRVKFFSFNLEIYSFFLLIK VNDL+NAL+AYIILARRY**FEL**TPVH IT
Subject   4004  PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILARRY**FEL**TPVHTIT  4195

Range 4: 4005 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.2 bits(280) 0.0 58/63(92%) 0/63(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNH  194
                TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ GQ*S QRS GVHHPRT*ILMI*ALI+SCT NH
Subject   4005  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT*ILMI*ALIDSCTHNH  4193

Range 5: 4000 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 59/65(91%) 0/65(0%) Minus/Plus
Query        5  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  199
                E+*L VQE IKAQIISIYVRG*CTP ER* DH*P+**EERNYRFRD*RKRTLLFSRGGFDIQ*VV
Subject   4000  EE*LCVQESIKAQIISIYVRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  4194

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Plus/Minus
Query      116  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  199
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  4083

Range 7: 4156 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        5  HHLLNVESTTREE  43
                HHLLNVESTTREE
Subject   4156  HHLLNVESTTREE  4194

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(339) 0.0 65/65(100%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4002 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 64/65(98%) 0/65(0%) Minus/Plus
Query        3  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  197
                EVIACTGVYQSSNH*YLRARMMYAIRAL RSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG
Subject   4002  EVIACTGVYQSSNH*YLRARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  4196

Range 3: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.3 bits(313) 0.0 64/65(98%) 0/65(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITS  198
                PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDL+NALMAYIILARRY**FEL**TPVHAITS
Subject   4001  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILARRY**FEL**TPVHAITS  4195

Range 4: 4002 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 63/64(98%) 0/64(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  197
                TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*S QRSDGVHHPRT*ILMI*ALINSCTRNHF
Subject   4002  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT*ILMI*ALINSCTRNHF  4193

Range 5: 4000 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 64/65(98%) 0/65(0%) Minus/Plus
Query        5  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  199
                EK*LRVQEFIKAQIISIYVRG*CTPSER* DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV
Subject   4000  EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  4194

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 28/28(100%) 0/28(0%) Plus/Minus
Query      116  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  199
                TL*WRTSSSHVDTNDLSFDKLLYTQSLL
Subject   4000  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  4083

Range 7: 4156 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        5  HHLLNVESTTREE  43
                HHLLNVESTTREE
Subject   4156  HHLLNVESTTREE  4194

Lettuce mosaic virus isolate Br6, complete genome

Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 7

Range 1: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(339) 0.0 65/65(100%) 0/65(0%) Minus/Plus
Query        4  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  198
                RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4001  RSDCVYRSLSKLKSLVSTCEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4001 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 53/65(82%) 0/65(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLINALMAYIILARRY**FEL**TPVHAITS  198
                PP  ECRIHHARRVKFFSFNLEIY FFLLI+ +N+LINAL+AYI+LARRY**F+L**TP+H ITS
Subject   4001  PPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIVLARRY**FKL**TPIHTITS  4195

Range 3: 4002 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.7 bits(257) 0.0 52/65(80%) 0/65(0%) Minus/Plus
Query        3  EVIACTGVYQSSNH*YLRARMMYAIRALMRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  197
                EVI C GVYQS NH*YLRAR MYA +ALMR L   MRRKK *ISRLKEKNFTLLAWWIRHS +GG
Subject   4002  EVIVCIGVYQSLNH*YLRARTMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGG  4196

Range 4: 4002 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 52/64(81%) 0/64(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT*ILMI*ALINSCTRNHF  197
                T  *MSNPPREKSKVLFLQSRNL FLSSH+  Q*SHQR  GVH PRT*ILMI*ALI+S T NHF
Subject   4002  TIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHF  4193

Range 5: 4000 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 51/65(78%) 0/65(0%) Minus/Plus
Query        5  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  199
                EK*L V E IKA IISIYVRG CTP +R**D+* + *EERN RFRD*RKRTLLFSRGGFDIQ +V
Subject   4000  EK*LCV*ESIKA*IISIYVRGRCTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMV  4194

Range 6: 4000 to 4083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 26/28(93%) 0/28(0%) Plus/Minus
Query      116  TL*WRTSSSHVDTNDLSFDKLLYTQSLL  199
                TL WRTSSSHVDTNDLSFD+LLYTQSLL
Subject   4000  TLWWRTSSSHVDTNDLSFDRLLYTQSLL  4083

Range 7: 4156 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        5  HHLLNVESTTREE  43
                HHLLNVESTTREE
Subject   4156  HHLLNVESTTREE  4194

Nucleotide Sequence (275 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
28
56
84
112
140
168
196
224
252
275

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
172.0 970.9 26% 1.658e-41 99% X97704.2
166.9 946.2 26% 5.456e-40 94% KJ161186.1
165.6 865.5 26% 1.415e-39 86% KJ161183.1
165.6 865.5 26% 1.415e-39 86% KJ161184.1
165.6 827.1 25% 1.415e-39 80% KJ161188.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 1214 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.0 bits(369) 0.0 70/71(99%) 0/71(0%) Plus/Minus
Query        3  CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAN  215
                CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA+
Subject   1214  CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAS  1426

Range 2: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 69/70(99%) 0/70(0%) Minus/Plus
Query        3  GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  212
                G WHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA
Subject   1217  GGWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  1426

Range 3: 1222 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 69/69(100%) 0/69(0%) Minus/Plus
Query        1  LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT  207
                LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT
Subject   1222  LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT  1428

Range 4: 1221 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 69/69(100%) 0/69(0%) Plus/Minus
Query        2  VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN  208
                VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN
Subject   1221  VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN  1427

Range 5: 1218 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 70/70(100%) 0/70(0%) Minus/Plus
Query        2  AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH  211
                AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH
Subject   1218  AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH  1427

Range 6: 1216 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 70/71(99%) 0/71(0%) Plus/Minus
Query        1  RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP  213
                RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P
Subject   1216  RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP  1428

Lettuce mosaic virus isolate FR25, complete genome

Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6

Range 1: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 69/70(99%) 0/70(0%) Minus/Plus
Query        3  GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  212
                G WHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA
Subject   1217  GGWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  1426

Range 2: 1214 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 67/71(94%) 0/71(0%) Plus/Minus
Query        3  CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAN  215
                C+VAVLNHTVR+GVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*+CPCSVPTA+
Subject   1214  CNVAVLNHTVRNGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*ICPCSVPTAS  1426

Range 3: 1222 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.7 bits(340) 0.0 66/69(96%) 0/69(0%) Minus/Plus
Query        1  LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT  207
                LAQNMDR RTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLH+APYGSIQRR T
Subject   1222  LAQNMDRFRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHYAPYGSIQRRCT  1428

Range 4: 1221 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.2 bits(339) 0.0 67/69(97%) 0/69(0%) Plus/Minus
Query        2  VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN  208
                V+RRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVL+LSMFCAN
Subject   1221  VQRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLNLSMFCAN  1427

Range 5: 1218 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 67/70(96%) 0/70(0%) Minus/Plus
Query        2  AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH  211
                AVGTEHGQ QNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTP RTVWFNTAT H
Subject   1218  AVGTEHGQIQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPLRTVWFNTATLH  1427

Range 6: 1216 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 70/71(99%) 0/71(0%) Plus/Minus
Query        1  RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP  213
                RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P
Subject   1216  RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP  1428

Lettuce mosaic virus isolate CL574, complete genome

Sequence ID: KJ161183.1 Length: 10080 Number of Matches: 6

Range 1: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 68/70(97%) 0/70(0%) Minus/Plus
Query        3  GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  212
                G WH+TWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA
Subject   1217  GGWHKTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  1426

Range 2: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 60/70(86%) 0/70(0%) Plus/Minus
Query        3  CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA  212
                CD+AVLNHTV DGVC+LTLRIYNFTIY  P+NEYTVSP*T+FSYDF* VQ+VTA*SWG*F*VCPC VPTA
Subject   1217  CDIAVLNHTVCDGVCNLTLRIYNFTIYSPPDNEYTVSP*TEFSYDF**VQHVTA*SWG*F*VCPCLVPTA  1426

Range 3: 1216 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 70/71(99%) 0/71(0%) Plus/Minus
Query        1  RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP  213
                RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P
Subject   1216  RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP  1428

Range 4: 1222 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 59/69(86%) 0/69(0%) Minus/Plus
Query        1  LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT  207
                LAQ+MDRLRTIPRIKRLR+EL+KNHRKI FKATQYIRC G  RW*SYRFAK*G+TLHH PYGSIQR RT
Subject   1222  LAQDMDRLRTIPRIKRLRVELIKNHRKIRFKATQYIRCQGESRW*SYRFAK*GYTLHHTPYGSIQRCRT  1428

Range 5: 1221 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 61/69(88%) 0/69(0%) Plus/Minus
Query        2  VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN  208
                VR RCIEPYG *WSV*PYFANL*LHHL  P*QRIYCVALN+IFL*FL SS RNRLILGIVLSLSM CAN
Subject   1221  VRHRCIEPYGV*WSV*PYFANL*LHHLLSP*QRIYCVALNRIFL*FLMSSTRNRLILGIVLSLSMSCAN  1427

Range 6: 1218 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 60/70(86%) 0/70(0%) Minus/Plus
Query        2  AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH  211
                AVGT HGQTQNYPQDQAVT *T QKS*EN V*GDTVYSL G  *MVKL*IRKVR HTPS TVWFNTA SH
Subject   1218  AVGTRHGQTQNYPQDQAVTC*THQKS*ENSV*GDTVYSLSGGE*MVKL*IRKVRLHTPSHTVWFNTAMSH  1427

Lettuce mosaic virus isolate CL574 ev, complete genome

Sequence ID: KJ161184.1 Length: 10080 Number of Matches: 6

Range 1: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 68/70(97%) 0/70(0%) Minus/Plus
Query        3  GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  212
                G WH+TWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA
Subject   1217  GGWHKTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  1426

Range 2: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 60/70(86%) 0/70(0%) Plus/Minus
Query        3  CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTA  212
                CD+AVLNHTV DGVC+LTLRIYNFTIY  P+NEYTVSP*T+FSYDF* VQ+VTA*SWG*F*VCPC VPTA
Subject   1217  CDIAVLNHTVCDGVCNLTLRIYNFTIYSPPDNEYTVSP*TEFSYDF**VQHVTA*SWG*F*VCPCLVPTA  1426

Range 3: 1216 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 70/71(99%) 0/71(0%) Plus/Minus
Query        1  RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP  213
                RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQ P
Subject   1216  RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQPP  1428

Range 4: 1222 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 59/69(86%) 0/69(0%) Minus/Plus
Query        1  LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT  207
                LAQ+MDRLRTIPRIKRLR+EL+KNHRKI FKATQYIRC G  RW*SYRFAK*G+TLHH PYGSIQR RT
Subject   1222  LAQDMDRLRTIPRIKRLRVELIKNHRKIRFKATQYIRCQGESRW*SYRFAK*GYTLHHTPYGSIQRCRT  1428

Range 5: 1221 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 61/69(88%) 0/69(0%) Plus/Minus
Query        2  VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN  208
                VR RCIEPYG *WSV*PYFANL*LHHL  P*QRIYCVALN+IFL*FL SS RNRLILGIVLSLSM CAN
Subject   1221  VRHRCIEPYGV*WSV*PYFANL*LHHLLSP*QRIYCVALNRIFL*FLMSSTRNRLILGIVLSLSMSCAN  1427

Range 6: 1218 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 60/70(86%) 0/70(0%) Minus/Plus
Query        2  AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH  211
                AVGT HGQTQNYPQDQAVT *T QKS*EN V*GDTVYSL G  *MVKL*IRKVR HTPS TVWFNTA SH
Subject   1218  AVGTRHGQTQNYPQDQAVTC*THQKS*ENSV*GDTVYSLSGGE*MVKL*IRKVRLHTPSHTVWFNTAMSH  1427

Lettuce mosaic virus isolate Tn515, complete genome

Sequence ID: KJ161188.1 Length: 10080 Number of Matches: 6

Range 1: 1217 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 68/70(97%) 0/70(0%) Minus/Plus
Query        3  GCWHRTWTDSELSPGSSGYVLNSSKIIGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  212
                G WHRTWTDSELSPGSSGYVLNSSKI+GKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA
Subject   1217  GGWHRTWTDSELSPGSSGYVLNSSKIMGKFGLRRHSIFVVRGRVDGEVIDSQSKVTHSITHRMVQYSDVA  1426

Range 2: 1214 to 1426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 57/71(80%) 0/71(0%) Plus/Minus
Query        3  CDVAVLNHTVRDGVCDLTLRIYNFTIYPTPNNEYTVSP*TKFSYDF*RVQYVTA*SWG*F*VCPCSVPTAN  215
                CDV VLNHT+RDGVCDLTLRIYNFT+Y  PNN+YTVSP*TKFS++F*RV ++T *SWG F*VCPCSVPTA+
Subject   1214  CDVTVLNHTMRDGVCDLTLRIYNFTVYSPPNNKYTVSP*TKFSHNF*RV*HITT*SWGQF*VCPCSVPTAS  1426

Range 3: 1216 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 68/71(96%) 0/71(0%) Plus/Minus
Query        1  RATSLY*TIRCVMECVTLLCESIXXXXXXXXXXNILCRLKPNFPMIFDEFNT*PLDPGDSSESVHVLCQQP  213
                RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFP+IFDEFNT*PLDPGD+SESVHVLCQ P
Subject   1216  RATSLY*TIRCVMECVTLLCESITSPSTLPLTTNILCRLKPNFPIIFDEFNT*PLDPGDNSESVHVLCQPP  1428

Range 4: 1218 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 58/70(83%) 0/70(0%) Minus/Plus
Query        2  AVGTEHGQTQNYPQDQAVTY*TRQKS*ENLV*GDTVYSLLGVG*MVKL*IRKVRSHTPSRTVWFNTATSH  211
                AVGTEHGQTQN PQDQ V  *TRQK  ENLV*GDTVY LLG  * VKL*IRKVRSHTPSR VWFNT TSH
Subject   1218  AVGTEHGQTQNCPQDQVVMC*TRQKLWENLV*GDTVYLLLGGE*TVKL*IRKVRSHTPSRIVWFNTVTSH  1427

Range 5: 1221 to 1427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 56/69(81%) 0/69(0%) Plus/Minus
Query        2  VRRRCIEPYGA*WSV*PYFANL*LHHLPYP*QRIYCVALNQIFL*FLTSSIRNRLILGIVLSLSMFCAN  208
                VRR CIEPY A*WSV*PYFANL*LH L  P*Q+IYCVALNQIF *FLTS   N LILG +LSLSMFCAN
Subject   1221  VRRHCIEPYDA*WSV*PYFANL*LHRLLSP*QQIYCVALNQIFP*FLTSLTHNHLILGTILSLSMFCAN  1427

Range 6: 1222 to 1428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 55/69(80%) 0/69(0%) Minus/Plus
Query        1  LAQNMDRLRTIPRIKRLRIELVKNHRKIWFKATQYIRC*G*GRW*SYRFAK*GHTLHHAPYGSIQRRRT  207
                LAQNMDRLR +PRIK L ++LVKN+ KIWFKATQYI C*G  R *SYRFAK*GHTLHHA YGSIQ RRT
Subject   1222  LAQNMDRLRIVPRIKWLCVKLVKNYGKIWFKATQYICC*GESRR*SYRFAK*GHTLHHASYGSIQ*RRT  1428

Nucleotide Sequence (100 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
10
20
30
40
50
60
70
80
90
100

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
77.6 339.4 34% 9.507e-14 91% AJ515299.1
77.6 358.2 33% 9.507e-14 97% X97704.2
77.6 322.9 33% 9.507e-14 84% KF955619.1
77.6 294.9 34% 9.507e-14 75% KJ161174.1
77.6 304.1 34% 9.507e-14 78% KJ161176.1

Alignments

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 5

Range 1: 1197 to 1292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(165) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query        1  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD  96
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+
Subject   1197  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  1292

Range 2: 1195 to 1290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 29/32(91%) 0/32(0%) Plus/Minus
Query        3  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT  98
                LFLQSRNL*FLSSHQ GQ*S QRS GVHHPRT
Subject   1195  LFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT  1290

Range 3: 1194 to 1289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 29/32(91%) 0/32(0%) Plus/Minus
Query        4  FSFNLEIYSFFLLIK*VNDLINALMAYIILAR  99
                FSFNLEIYSFFLLIK VNDL+NAL+AYIILAR
Subject   1194  FSFNLEIYSFFLLIKQVNDLVNALVAYIILAR  1289

Range 4: 1196 to 1291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 29/32(91%) 0/32(0%) Minus/Plus
Query        2  VRG*CTPSER**DH*PI**EERNYRFRD*RKR  97
                VRG*CTP ER* DH*P+**EERNYRFRD*RKR
Subject   1196  VRG*CTPPER*RDH*PV**EERNYRFRD*RKR  1291

Range 5: 1195 to 1290 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 29/32(91%) 0/32(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  98
                RARMMYA RAL RSLT LMRRKKL*ISRLKEK
Subject   1195  RARMMYATRALTRSLTCLMRRKKL*ISRLKEK  1290

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(165) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query        1  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD  96
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4053 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 31/32(97%) 0/32(0%) Plus/Minus
Query        3  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT  98
                LFLQSRNL*FLSSHQIGQ*S QRSDGVHHPRT
Subject   4053  LFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT  4148

Range 3: 4052 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 31/32(97%) 0/32(0%) Plus/Minus
Query        4  FSFNLEIYSFFLLIK*VNDLINALMAYIILAR  99
                FSFNLEIYSFFLLIK*VNDL+NALMAYIILAR
Subject   4052  FSFNLEIYSFFLLIK*VNDLVNALMAYIILAR  4147

Range 4: 4053 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  98
                RARMMYAIRAL RSLTYLMRRKKL*ISRLKEK
Subject   4053  RARMMYAIRALTRSLTYLMRRKKL*ISRLKEK  4148

Range 5: 4054 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query        2  VRG*CTPSER**DH*PI**EERNYRFRD*RKR  97
                VRG*CTPSER* DH*PI**EERNYRFRD*RKR
Subject   4054  VRG*CTPSER*RDH*PI**EERNYRFRD*RKR  4149

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(165) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query        1  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD  96
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4055 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 27/31(87%) 0/31(0%) Plus/Minus
Query        4  FSFNLEIYSFFLLIK*VNDLINALMAYIILA  96
                FSFNLEIYSFFLLIK VND +NAL+AYIILA
Subject   4055  FSFNLEIYSFFLLIKQVNDFVNALVAYIILA  4147

Range 3: 4056 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 27/31(87%) 0/31(0%) Plus/Minus
Query        3  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPR  95
                LFLQSRNL*FLSSHQ GQ*  QRS GVHHPR
Subject   4056  LFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPR  4148

Range 4: 4054 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 27/32(84%) 0/32(0%) Minus/Plus
Query        2  VRG*CTPSER**DH*PI**EERNYRFRD*RKR  97
                +RG*CTP ER* +H*P+**EERNYRFRD*RKR
Subject   4054  MRG*CTPPER*RNH*PV**EERNYRFRD*RKR  4149

Range 5: 4056 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 27/31(87%) 0/31(0%) Minus/Plus
Query        3  ARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  95
                ARMMYA RAL +SLT LMRRKKL*ISRLKEK
Subject   4056  ARMMYATRALTKSLTCLMRRKKL*ISRLKEK  4148

Lettuce mosaic virus isolate Br6, complete genome

Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(165) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query        1  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD  96
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4052 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 25/32(78%) 0/32(0%) Plus/Minus
Query        4  FSFNLEIYSFFLLIK*VNDLINALMAYIILAR  99
                FSFNLEIY FFLLI+ +N+LINAL+AYI+LAR
Subject   4052  FSFNLEIYRFFLLIEQINNLINALVAYIVLAR  4147

Range 3: 4053 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 25/32(78%) 0/32(0%) Plus/Minus
Query        3  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT  98
                LFLQSRNL FLSSH+  Q*SHQR  GVH PRT
Subject   4053  LFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT  4148

Range 4: 4054 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 24/32(75%) 0/32(0%) Minus/Plus
Query        2  VRG*CTPSER**DH*PI**EERNYRFRD*RKR  97
                VRG CTP +R**D+* + *EERN RFRD*RKR
Subject   4054  VRGRCTPPKR**DY*SVR*EERNDRFRD*RKR  4149

Range 5: 4053 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 24/32(75%) 0/32(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  98
                RAR MYA +ALMR L   MRRKK *ISRLKEK
Subject   4053  RARTMYATKALMRLLICSMRRKKR*ISRLKEK  4148

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(165) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query        1  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKD  96
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGK+
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKE  4150

Range 2: 4053 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 26/32(81%) 0/32(0%) Plus/Minus
Query        3  LFLQSRNL*FLSSHQIGQ*SHQRSDGVHHPRT  98
                LFLQSRNL FLSSH+  Q*SHQR  GVHHPRT
Subject   4053  LFLQSRNLSFLSSHRTDQ*SHQRFGGVHHPRT  4148

Range 3: 4052 to 4147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 26/32(81%) 0/32(0%) Plus/Minus
Query        4  FSFNLEIYSFFLLIK*VNDLINALMAYIILAR  99
                FSFNLEIY FFLLI+ +N+LINAL+AYIILAR
Subject   4052  FSFNLEIYRFFLLIEQINNLINALVAYIILAR  4147

Range 4: 4054 to 4149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 25/32(78%) 0/32(0%) Minus/Plus
Query        2  VRG*CTPSER**DH*PI**EERNYRFRD*RKR  97
                VRG*CTP +R**D+* + *EERN RFRD*RKR
Subject   4054  VRG*CTPPKR**DY*SVR*EERNDRFRD*RKR  4149

Range 5: 4053 to 4148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 25/32(78%) 0/32(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLTYLMRRKKL*ISRLKEK  98
                RARMMYA +ALMR L   MRRKK *ISRLKEK
Subject   4053  RARMMYATKALMRLLICSMRRKKR*ISRLKEK  4148

Nucleotide Sequence (351 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
351

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
238.4 1281.1 27% 2.741e-61 96% AJ306288.1
238.4 1281.1 27% 2.741e-61 96% X97704.2
238.4 1281.1 27% 2.741e-61 96% KJ161179.1
235.7 1263.3 27% 1.843e-60 96% KF955619.1
222.4 1183.5 27% 1.843e-56 87% KJ161176.1

Alignments

Lettuce mosaic virus complete genomic RNA, Yuhang isolate

Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6

Range 1: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.4 bits(514) 0.0 92/94(98%) 0/94(0%) Minus/Minus
Query       70  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA  351
                CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP  A
Subject   6902  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA  7183

Range 2: 6912 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 90/90(100%) 0/90(0%) Plus/Plus
Query       80  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  349
                GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL
Subject   6912  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  7181

Range 3: 6901 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 91/94(97%) 0/94(0%) Plus/Plus
Query       69  WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY  350
                WR  GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTSGQQLLVETLDHY
Subject   6901  WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSGQQLLVETLDHY  7182

Range 4: 6919 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(452) 0.0 87/88(99%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD
Subject   6919  VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  7182

Range 5: 6903 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 90/93(97%) 0/93(0%) Minus/Minus
Query       71  **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR  349
                **SSVSTRSCCPLVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R
Subject   6903  **SSVSTRSCCPLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR  7181

Range 6: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 90/94(96%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT
Subject   6902  GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT  7183

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.4 bits(514) 0.0 92/94(98%) 0/94(0%) Minus/Minus
Query       70  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA  351
                CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP  A
Subject   6902  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA  7183

Range 2: 6912 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 90/90(100%) 0/90(0%) Plus/Plus
Query       80  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  349
                GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL
Subject   6912  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  7181

Range 3: 6901 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 91/94(97%) 0/94(0%) Plus/Plus
Query       69  WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY  350
                WR  GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTSGQQLLVETLDHY
Subject   6901  WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSGQQLLVETLDHY  7182

Range 4: 6919 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(452) 0.0 87/88(99%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD
Subject   6919  VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  7182

Range 5: 6903 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 90/93(97%) 0/93(0%) Minus/Minus
Query       71  **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR  349
                **SSVSTRSCCPLVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R
Subject   6903  **SSVSTRSCCPLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR  7181

Range 6: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 90/94(96%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT
Subject   6902  GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT  7183

Lettuce mosaic virus isolate CL394, complete genome

Sequence ID: KJ161179.1 Length: 10080 Number of Matches: 6

Range 1: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.4 bits(514) 0.0 92/94(98%) 0/94(0%) Minus/Minus
Query       70  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA  351
                CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP  A
Subject   6902  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA  7183

Range 2: 6912 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 90/90(100%) 0/90(0%) Plus/Plus
Query       80  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  349
                GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL
Subject   6912  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  7181

Range 3: 6901 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(467) 0.0 91/94(97%) 0/94(0%) Plus/Plus
Query       69  WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY  350
                WR  GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTSGQQLLVETLDHY
Subject   6901  WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSGQQLLVETLDHY  7182

Range 4: 6919 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(452) 0.0 87/88(99%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD
Subject   6919  VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  7182

Range 5: 6903 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 90/93(97%) 0/93(0%) Minus/Minus
Query       71  **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR  349
                **SSVSTRSCCPLVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R
Subject   6903  **SSVSTRSCCPLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR  7181

Range 6: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 90/94(96%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT
Subject   6902  GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT  7183

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6

Range 1: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.7 bits(508) 0.0 91/94(97%) 0/94(0%) Minus/Minus
Query       70  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA  351
                CSDPVFPQEAVV+WCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNP  A
Subject   6902  CSDPVFPQEAVVYWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPQYA  7183

Range 2: 6901 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
213.2 bits(459) 0.0 90/94(96%) 0/94(0%) Plus/Plus
Query       69  WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY  350
                WR  GSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EH QHRI*DERDNTS QQLLVETLDHY
Subject   6901  WRIEGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHHQHRI*DERDNTSRQQLLVETLDHY  7182

Range 3: 6912 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 89/90(99%) 0/90(0%) Plus/Plus
Query       80  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  349
                GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQ TTASCGNTGSL
Subject   6912  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQ*TTASCGNTGSL  7181

Range 4: 6919 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(452) 0.0 87/88(99%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                VVIQCFHKKLLSTGVVTLVSDTVL MLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD
Subject   6919  VVIQCFHKKLLSTGVVTLVSDTVLVMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  7182

Range 5: 6903 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.2 bits(424) 0.0 89/93(96%) 0/93(0%) Minus/Minus
Query       71  **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR  349
                **SSVSTRSCC LVLSRSSQIRCW CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEP +R
Subject   6903  **SSVSTRSCCLLVLSRSSQIRCW*CSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPSIR  7181

Range 6: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 90/94(96%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT
Subject   6902  GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT  7183

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 6

Range 1: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.4 bits(479) 0.0 86/94(91%) 0/94(0%) Minus/Minus
Query       70  CSDPVFPQEAVVHWCCHARLRYGAGDALILE*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFTRKYFELRCIRKHVFTMSRLNPHSA  351
                CSDPVFPQEAVVH CCHARLR+GAGDALIL+*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSF RKYFELRC+ KHVFTMSRLNP  A
Subject   6902  CSDPVFPQEAVVHGCCHARLRHGAGDALILK*GSNEANLLSFDRWTEFQLLWKRREVWCENDNHYVPSFARKYFELRCVWKHVFTMSRLNPQHA  7183

Range 2: 6919 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.4 bits(431) 0.0 85/88(97%) 0/88(0%) Minus/Minus
Query       87  VVIQCFHKKLLSTGVVTLVSDTVLEMLLSWNKDPTRQIFSPLIGGRNFSFCGNGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  350
                VVIQCFHKKLLSTGVVTLVSDTVL MLLS NKDPTRQIFSPLIGGRNFSFCG GGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD
Subject   6919  VVIQCFHKKLLSTGVVTLVSDTVLVMLLS*NKDPTRQIFSPLIGGRNFSFCGKGGKSGVRMITIMSLPSQGSTLSCVVFGSTYSPCLD  7182

Range 3: 6901 to 7182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 82/94(87%) 0/94(0%) Plus/Plus
Query       69  WRSGGSIETW*IRASEYNAAQSTSL*RKGHNGYHSHTRLPSVSTKAEIPSTDQRREDLPRWILIPG*EHLQHRI*DERDNTSGQQLLVETLDHY  350
                WR  GS+ETW*IRAS++NAAQSTSL RKGHNGYHSHTRLPS STKAEIPSTDQRREDLPRWILI  *EH QHR+*DERDNT GQQLLVETLDHY
Subject   6901  WRVEGSVETW*IRASKHNAAQSTSLRRKGHNGYHSHTRLPSFSTKAEIPSTDQRREDLPRWILISR*EHHQHRV*DERDNTRGQQLLVETLDHY  7182

Range 4: 6902 to 7183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 90/94(96%) 0/94(0%) Plus/Plus
Query       70  GGVGVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSIXXXXXXXXXXXPVDNSFLWKHWITT  351
                G + VQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSI+STVSETSVTTPVDNSFLWKHWITT
Subject   6902  GVLRVQSRHGEYVLPNTTQLKVLPCEGRDIMVIILTPDFPPFPQKLKFRPPIKGEKICLVGSLFQDKSITSTVSETSVTTPVDNSFLWKHWITT  7183

Range 5: 6912 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 81/90(90%) 0/90(0%) Plus/Plus
Query       80  GFNRDMVNTCFRIQRSSKYFLVKEGT*WLSFSHQTSLRFHKS*NSVHRSKERRFASLDPYSRIRASPAPYLRRA*QHQWTTASCGNTGSL  349
                GF+RDMVNTCF+ QRSSKYFL KEGT*WLSFSHQTSL FHKS*NSVHRSKERRFASLDPY +IRASPAP LRRA*QH WTTASCGNTGSL
Subject   6912  GFSRDMVNTCFQTQRSSKYFLAKEGT*WLSFSHQTSLLFHKS*NSVHRSKERRFASLDPYFKIRASPAPCLRRA*QHPWTTASCGNTGSL  7181

Range 6: 6903 to 7181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.5 bits(368) 0.0 81/93(87%) 0/93(0%) Minus/Minus
Query       71  **SSVSTRSCCPLVLSRSSQIRCWRCSYPGIRIQRGKSSLL*SVDGISAFVETEGSLV*E**PLCPFLHKEVL*AALYSEARIHHVSIEPPLR  349
                **SSVSTRSCCP VLSRSSQ RCW CSY  IRIQRGKSSLL*SVDGISAFVE EGSLV*E**PLCPFL KEVL*AAL  EARIHHVS EP  R
Subject   6903  **SSVSTRSCCPRVLSRSSQTRCW*CSYLEIRIQRGKSSLL*SVDGISAFVEKEGSLV*E**PLCPFLRKEVL*AALCLEARIHHVSTEPSTR  7181

Nucleotide Sequence (117 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
117

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
81.2 432.9 30% 7.827e-15 84% AJ515299.1
81.2 424.2 28% 7.827e-15 82% AJ306288.1
81.2 452.6 28% 7.827e-15 87% X97704.2
81.2 394.4 28% 7.827e-15 74% KF955619.1
81.2 396.3 30% 7.827e-15 74% KJ161174.1

Alignments

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 6

Range 1: 1137 to 1238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.2 bits(171) 0.0 34/34(100%) 0/34(0%) Minus/Plus
Query        3  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  104
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII
Subject   1137  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  1238

Range 2: 1136 to 1240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/35(94%) 0/35(0%) Plus/Minus
Query        1  SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  105
                SMISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL
Subject   1136  SMISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL  1240

Range 3: 1138 to 1239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 31/34(91%) 0/34(0%) Minus/Plus
Query        2  VREVIACTGVYQSSNH*YLRARMMYAIRALMRSL  103
                VREVI CTGVYQSSNH*YLRARMMYA RAL RSL
Subject   1138  VREVIVCTGVYQSSNH*YLRARMMYATRALTRSL  1239

Range 4: 1125 to 1238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 32/38(84%) 0/38(0%) Plus/Minus
Query        3  NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH  116
                NDL+NAL+AYIILARRY**FEL**TPVH ITSLT+  H
Subject   1125  NDLVNALVAYIILARRY**FEL**TPVHTITSLTVKHH  1238

Range 5: 1138 to 1239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 30/34(88%) 0/34(0%) Plus/Minus
Query        2  Q*SHQRSDGVHHPRT*ILMI*ALINSCTRNHFSH  103
                Q*S QRS GVHHPRT*ILMI*ALI+SCT NHFSH
Subject   1138  Q*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFSH  1239

Range 6: 1136 to 1240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 30/35(86%) 0/35(0%) Minus/Plus
Query        1  E*EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*  105
                +*EK*L VQE IKAQIISIYVRG*CTP ER* DH*
Subject   1136  Q*EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*  1240

Lettuce mosaic virus complete genomic RNA, Yuhang isolate

Sequence ID: AJ306288.1 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.2 bits(171) 0.0 34/34(100%) 0/34(0%) Minus/Plus
Query        3  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  104
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  4096

Range 2: 3994 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/35(94%) 0/35(0%) Plus/Minus
Query        1  SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  105
                SMISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL
Subject   3994  SMISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL  4098

Range 3: 3999 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 30/33(91%) 0/33(0%) Minus/Plus
Query        2  REVIACTGVYQSSNH*YLRARMMYAIRALMRSL  100
                REVI CTGVYQSSNH*YLRARMMYA RAL RSL
Subject   3999  REVIVCTGVYQSSNH*YLRARMMYATRALTRSL  4097

Range 4: 3983 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 31/38(82%) 0/38(0%) Plus/Minus
Query        3  NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH  116
                NDL+NAL+AYIILARRY**FEL**TPVH ITSL +  H
Subject   3983  NDLVNALVAYIILARRY**FEL**TPVHTITSLAIKHH  4096

Range 5: 3999 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 29/33(88%) 0/33(0%) Plus/Minus
Query        2  Q*SHQRSDGVHHPRT*ILMI*ALINSCTRNHFS  100
                Q*S QRS GVHHPRT*ILMI*ALI+SCT NHFS
Subject   3999  Q*SRQRSGGVHHPRT*ILMI*ALIDSCTHNHFS  4097

Range 6: 4000 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 29/33(88%) 0/33(0%) Minus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*  99
                EK*L VQE IKAQIISIYVRG*CTP ER* DH*
Subject   4000  EK*LCVQESIKAQIISIYVRG*CTPPER*RDH*  4098

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.2 bits(171) 0.0 34/34(100%) 0/34(0%) Minus/Plus
Query        3  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  104
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  4096

Range 2: 3994 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 35/35(100%) 0/35(0%) Plus/Minus
Query        1  SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  105
                SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL
Subject   3994  SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  4098

Range 3: 3999 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 32/33(97%) 0/33(0%) Plus/Minus
Query        2  Q*SHQRSDGVHHPRT*ILMI*ALINSCTRNHFS  100
                Q*S QRSDGVHHPRT*ILMI*ALINSCTRNHFS
Subject   3999  Q*SRQRSDGVHHPRT*ILMI*ALINSCTRNHFS  4097

Range 4: 3999 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 32/33(97%) 0/33(0%) Minus/Plus
Query        2  REVIACTGVYQSSNH*YLRARMMYAIRALMRSL  100
                REVIACTGVYQSSNH*YLRARMMYAIRAL RSL
Subject   3999  REVIACTGVYQSSNH*YLRARMMYAIRALTRSL  4097

Range 5: 3983 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 33/38(87%) 0/38(0%) Plus/Minus
Query        3  NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH  116
                NDL+NALMAYIILARRY**FEL**TPVHAITSL +  H
Subject   3983  NDLVNALMAYIILARRY**FEL**TPVHAITSLAVKHH  4096

Range 6: 4000 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 32/33(97%) 0/33(0%) Minus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*  99
                EK*LRVQEFIKAQIISIYVRG*CTPSER* DH*
Subject   4000  EK*LRVQEFIKAQIISIYVRG*CTPSER*RDH*  4098

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.2 bits(171) 0.0 34/34(100%) 0/34(0%) Minus/Plus
Query        3  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  104
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  4096

Range 2: 3994 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/35(94%) 0/35(0%) Plus/Minus
Query        1  SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  105
                SMISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL
Subject   3994  SMISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL  4098

Range 3: 3999 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 27/33(82%) 0/33(0%) Minus/Plus
Query        2  REVIACTGVYQSSNH*YLRARMMYAIRALMRSL  100
                R VI CTGVYQSSNH*YL ARMMYA RAL +SL
Subject   3999  RGVIVCTGVYQSSNH*YLHARMMYATRALTKSL  4097

Range 4: 3983 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 28/38(74%) 0/38(0%) Plus/Minus
Query        3  NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH  116
                ND +NAL+AYIILA RY**FEL**TPVH IT L +  H
Subject   3983  NDFVNALVAYIILACRY**FEL**TPVHTITPLAVKHH  4096

Range 5: 3999 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 26/33(79%) 0/33(0%) Plus/Minus
Query        2  Q*SHQRSDGVHHPRT*ILMI*ALINSCTRNHFS  100
                Q*  QRS GVHHPR *ILMI*ALI+SCT NH S
Subject   3999  Q*FRQRSGGVHHPRM*ILMI*ALIDSCTHNHSS  4097

Range 6: 4000 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 26/33(79%) 0/33(0%) Minus/Plus
Query        1  EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*  99
                E+*L VQE IKAQIISIY+RG*CTP ER* +H*
Subject   4000  EE*LCVQESIKAQIISIYMRG*CTPPER*RNH*  4098

Lettuce mosaic virus isolate Br6, complete genome

Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 6

Range 1: 3995 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.2 bits(171) 0.0 34/34(100%) 0/34(0%) Minus/Plus
Query        3  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  104
                SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII
Subject   3995  SERSDCVYRSLSKLKSLVSTCEDDVRHQSVDEII  4096

Range 2: 3994 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 32/35(91%) 0/35(0%) Plus/Minus
Query        1  SMISSTL*WRTSSSHVDTNDLSFDKLLYTQSLLSL  105
                S+ISSTL WRTSSSHVDTNDLSFD+LLYTQSLLSL
Subject   3994  SIISSTLWWRTSSSHVDTNDLSFDRLLYTQSLLSL  4098

Range 3: 3983 to 4096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 29/38(76%) 0/38(0%) Plus/Minus
Query        3  NDLINALMAYIILARRY**FEL**TPVHAITSLTLAKH  116
                N+LINAL+AYI+LARRY**F+L**TP+H ITSLT+  H
Subject   3983  NNLINALVAYIVLARRY**FKL**TPIHTITSLTVKHH  4096

Range 4: 3996 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 28/34(82%) 0/34(0%) Plus/Minus
Query        2  Q*SHQRSDGVHHPRT*ILMI*ALINSCTRNHFSH  103
                Q*SHQR  GVH PRT*ILMI*ALI+S T NHFSH
Subject   3996  Q*SHQRFGGVHRPRT*ILMI*ALIDSYTHNHFSH  4097

Range 5: 3996 to 4097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 27/34(79%) 0/34(0%) Minus/Plus
Query        2  VREVIACTGVYQSSNH*YLRARMMYAIRALMRSL  103
                VREVI C GVYQS NH*YLRAR MYA +ALMR L
Subject   3996  VREVIVCIGVYQSLNH*YLRARTMYATKALMRLL  4097

Range 6: 3994 to 4098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 26/35(74%) 0/35(0%) Minus/Plus
Query        1  E*EK*LRVQEFIKAQIISIYVRG*CTPSER**DH*  105
                +*EK*L V E IKA IISIYVRG CTP +R**D+*
Subject   3994  Q*EK*LCV*ESIKA*IISIYVRGRCTPPKR**DY*  4098

Nucleotide Sequence (146 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
15
30
45
60
75
90
105
120
135
146

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
118.1 517.8 34% 6.843e-26 91% AJ515299.1
118.1 536.6 34% 6.843e-26 96% X97704.2
118.1 473.8 34% 6.843e-26 81% KJ161174.1
118.1 482.9 34% 6.843e-26 83% KJ161176.1
118.1 503.6 34% 6.843e-26 87% KF955619.1

Alignments

Lettuce mosaic virus partial gene for polyprotein, P3 CI protein, genomic RNA, strain Tn2

Sequence ID: AJ515299.1 Length: 1939 Number of Matches: 5

Range 1: 1197 to 1337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.1 bits(252) 0.0 47/47(100%) 0/47(0%) Minus/Plus
Query        4  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  144
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   1197  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  1337

Range 2: 1197 to 1337 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 43/47(91%) 0/47(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA  144
                PPLTECRIHHARRVKFFSFNLEIYSFFLLIK +NDL+NAL+AYIILA
Subject   1197  PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDLVNALVAYIILA  1337

Range 3: 1195 to 1338 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 44/48(92%) 0/48(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  146
                RARMMYA RAL RSL  LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG
Subject   1195  RARMMYATRALTRSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  1338

Range 4: 1195 to 1335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 43/47(91%) 0/47(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  146
                TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ  Q*S QRS GVHHPRT
Subject   1195  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*SRQRSGGVHHPRT  1335

Range 5: 1196 to 1336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 43/47(91%) 0/47(0%) Minus/Plus
Query        5  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  145
                VRG*CTP ER* DH* +**EERNYRFRD*RKRTLLFSRGGFDIQ*VV
Subject   1196  VRG*CTPPER*RDH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  1336

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.1 bits(252) 0.0 47/47(100%) 0/47(0%) Minus/Plus
Query        4  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  144
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 45/47(96%) 0/47(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA  144
                PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*+NDL+NALMAYIILA
Subject   4055  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*VNDLVNALMAYIILA  4195

Range 3: 4053 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 46/48(96%) 0/48(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  146
                RARMMYAIRAL RSL YLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG
Subject   4053  RARMMYAIRALTRSLTYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  4196

Range 4: 4053 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 45/47(96%) 0/47(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  146
                TTY*MSNPPREKSKVLFLQSRNL*FLSSHQI Q*S QRSDGVHHPRT
Subject   4053  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIGQ*SRQRSDGVHHPRT  4193

Range 5: 4054 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 45/47(96%) 0/47(0%) Minus/Plus
Query        5  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  145
                VRG*CTPSER* DH* I**EERNYRFRD*RKRTLLFSRGGFDIQ*VV
Subject   4054  VRG*CTPSER*RDH*PI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  4194

Lettuce mosaic virus isolate Br6, complete genome

Sequence ID: KJ161174.1 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.1 bits(252) 0.0 47/47(100%) 0/47(0%) Minus/Plus
Query        4  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  144
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 39/47(83%) 0/47(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA  144
                PP  ECRIHHARRVKFFSFNLEIY FFLLI+ IN+LINAL+AYI+LA
Subject   4055  PPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIVLA  4195

Range 3: 4053 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 39/48(81%) 0/48(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  146
                RAR MYA +ALMR LI  MRRKK *ISRLKEKNFTLLAWWIRHS +GG
Subject   4053  RARTMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGG  4196

Range 4: 4053 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 39/47(83%) 0/47(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  146
                T  *MSNPPREKSKVLFLQSRNL FLSSH+ DQ*SHQR  GVH PRT
Subject   4053  TIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHRPRT  4193

Range 5: 4054 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 38/47(81%) 0/47(0%) Minus/Plus
Query        5  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  145
                VRG CTP +R**D+*S+ *EERN RFRD*RKRTLLFSRGGFDIQ +V
Subject   4054  VRGRCTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMV  4194

Lettuce mosaic virus isolate CL208, complete genome

Sequence ID: KJ161176.1 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.1 bits(252) 0.0 47/47(100%) 0/47(0%) Minus/Plus
Query        4  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  144
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 40/47(85%) 0/47(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA  144
                PP  ECRIHHARRVKFFSFNLEIY FFLLI+ IN+LINAL+AYIILA
Subject   4055  PPFAECRIHHARRVKFFSFNLEIYRFFLLIEQINNLINALVAYIILA  4195

Range 3: 4053 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 40/48(83%) 0/48(0%) Minus/Plus
Query        3  RARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  146
                RARMMYA +ALMR LI  MRRKK *ISRLKEKNFTLLAWWIRHS +GG
Subject   4053  RARMMYATKALMRLLICSMRRKKR*ISRLKEKNFTLLAWWIRHSANGG  4196

Range 4: 4053 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 40/47(85%) 0/47(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPRT  146
                T  *MSNPPREKSKVLFLQSRNL FLSSH+ DQ*SHQR  GVHHPRT
Subject   4053  TIC*MSNPPREKSKVLFLQSRNLSFLSSHRTDQ*SHQRFGGVHHPRT  4193

Range 5: 4054 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 39/47(83%) 0/47(0%) Minus/Plus
Query        5  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  145
                VRG*CTP +R**D+*S+ *EERN RFRD*RKRTLLFSRGGFDIQ +V
Subject   4054  VRG*CTPPKR**DY*SVR*EERNDRFRD*RKRTLLFSRGGFDIQQMV  4194

Lettuce mosaic virus isolate Muju, complete genome

Sequence ID: KF955619.1 Length: 10080 Number of Matches: 5

Range 1: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.1 bits(252) 0.0 47/47(100%) 0/47(0%) Minus/Plus
Query        4  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  144
                CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW
Subject   4055  CEDDVRHQSVDEIIDLFDEKKETIDFEIEGKELYSSRVVDSTFSKWW  4195

Range 2: 4055 to 4195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 42/47(89%) 0/47(0%) Plus/Minus
Query        4  PPLTECRIHHARRVKFFSFNLEIYSFFLLIK*INDLINALMAYIILA  144
                PPLTECRIHHARRVKFFSFNLEIYSFFLLIK +ND +NAL+AYIILA
Subject   4055  PPLTECRIHHARRVKFFSFNLEIYSFFLLIKQVNDFVNALVAYIILA  4195

Range 3: 4056 to 4196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 42/47(89%) 0/47(0%) Minus/Plus
Query        3  ARMMYAIRALMRSLIYLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  143
                ARMMYA RAL +SL  LMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG
Subject   4056  ARMMYATRALTKSLTCLMRRKKL*ISRLKEKNFTLLAWWIRHSVSGG  4196

Range 4: 4056 to 4193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 41/46(89%) 0/46(0%) Plus/Minus
Query        6  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQIDQ*SHQRSDGVHHPR  143
                TTY*MSNPPREKSKVLFLQSRNL*FLSSHQ  Q*  QRS GVHHPR
Subject   4056  TTY*MSNPPREKSKVLFLQSRNL*FLSSHQTGQ*FRQRSGGVHHPR  4193

Range 5: 4054 to 4194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 41/47(87%) 0/47(0%) Minus/Plus
Query        5  VRG*CTPSER**DH*SI**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  145
                +RG*CTP ER* +H* +**EERNYRFRD*RKRTLLFSRGGFDIQ*VV
Subject   4054  MRG*CTPPER*RNH*PV**EERNYRFRD*RKRTLLFSRGGFDIQ*VV  4194

Nucleotide Sequence (399 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 21 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
40
80
120
160
200
240
280
320
360
399

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
192.1 1080.9 27% 2.897e-47 87% X97704.2
188.9 1067.2 26% 2.676e-46 85% KJ161186.1
188.0 993.8 26% 5.051e-46 78% KJ161177.1
188.0 1003.5 20% 5.051e-46 84% KJ161180.1
188.0 1003.5 20% 5.051e-46 84% KJ161181.1

Alignments

Lettuce mosaic virus (strain O) mRNA for polyprotein

Sequence ID: X97704.2 Length: 10080 Number of Matches: 6

Range 1: 2467 to 2733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.1 bits(413) 0.0 77/89(87%) 0/89(0%) Minus/Plus
Query       67  FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPNTPNT  333
                +  RRPRG S*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIP+S+  +   T
Subject   2467  YACRRPRGSS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPYSESQHRDTT  2733

Range 2: 2474 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.6 bits(403) 0.0 76/77(99%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH
Subject   2474  VDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  2704

Range 3: 2477 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.4 bits(396) 0.0 75/76(99%) 0/76(0%) Plus/Minus
Query       96  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV  323
                MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSL+LWDV
Subject   2477  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLILWDV  2704

Range 4: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 76/77(99%) 0/77(0%) Minus/Plus
Query       92  TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  322
                TSQR KLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF
Subject   2478  TSQRIKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  2708

Range 5: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.0 bits(369) 0.0 75/77(97%) 0/77(0%) Plus/Minus
Query       92  ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR  322
                E GIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*L PLGR
Subject   2478  EYGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LDPLGR  2708

Range 6: 2476 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 75/76(99%) 0/76(0%) Plus/Minus
Query       97  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS  324
                WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS
Subject   2476  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS  2703

Lettuce mosaic virus isolate FR25, complete genome

Sequence ID: KJ161186.1 Length: 10080 Number of Matches: 6

Range 1: 2467 to 2733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.9 bits(406) 0.0 76/89(85%) 0/89(0%) Minus/Plus
Query       67  FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPNTPNT  333
                +  RRPRG S*RFHEDGTRDS ETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIP+S+  +   T
Subject   2467  YACRRPRGSS*RFHEDGTRDSCETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPYSESQHRDAT  2733

Range 2: 2474 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.6 bits(403) 0.0 76/77(99%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH
Subject   2474  VDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  2704

Range 3: 2477 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 74/76(97%) 0/76(0%) Plus/Minus
Query       96  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV  323
                MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFH YLACHLREIFSL+LWDV
Subject   2477  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHSYLACHLREIFSLILWDV  2704

Range 4: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.5 bits(368) 0.0 75/77(97%) 0/77(0%) Minus/Plus
Query       92  TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  322
                TSQR KLKISRRWHAR* *NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF
Subject   2478  TSQRIKLKISRRWHAR*L*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  2708

Range 5: 2476 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 75/76(99%) 0/76(0%) Plus/Minus
Query       97  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS  324
                WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS
Subject   2476  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS  2703

Range 6: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 74/77(96%) 0/77(0%) Plus/Minus
Query       92  ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR  322
                E GIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVS LSRVPSS*NL*L PLGR
Subject   2478  EYGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSQLSRVPSS*NL*LDPLGR  2708

Lettuce mosaic virus isolate CL246, complete genome

Sequence ID: KJ161177.1 Length: 10080 Number of Matches: 6

Range 1: 2474 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.0 bits(404) 0.0 76/77(99%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH
Subject   2474  IDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  2704

Range 2: 2467 to 2733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 69/89(78%) 0/89(0%) Minus/Plus
Query       67  FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSKQPNTPNT  333
                +  RRPRG S RFHE+GTRDSSET  GVALNDGC +GL*YISYISSRHPKI VT NLSRSRNENIPCN*LIWFNHDWIP+S+  +   T
Subject   2467  YAYRRPRGSSQRFHENGTRDSSETTWGVALNDGCSNGL*YISYISSRHPKIRVTPNLSRSRNENIPCN*LIWFNHDWIPYSESQHRDAT  2733

Range 3: 2476 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 75/76(99%) 0/76(0%) Plus/Minus
Query       97  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS  324
                WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS
Subject   2476  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS  2703

Range 4: 2477 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 68/76(89%) 0/76(0%) Plus/Minus
Query       96  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV  323
                MESSRD*TI*VNYMECFRCVID*DS *L SSGVWMKCS*YITSR +IHH*GPLP+LFHCYLACH REIF L+LWDV
Subject   2477  MESSRD*TI*VNYMECFRCVID*DSG*L*SSGVWMKCS*YITSRCYIHH*GPLPKLFHCYLACHFREIFGLILWDV  2704

Range 5: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 68/77(88%) 0/77(0%) Minus/Plus
Query       92  TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  322
                TSQR K KISR+WHAR*Q*N+ GSGPQ*WM +RLVIY*LHFIQTPED+SY ES*SITQRKHSM*LTHMVQSRLDSIF
Subject   2478  TSQRIKPKISRKWHAR*Q*NNLGSGPQ*WM*QRLVIY*LHFIQTPEDQSYPES*SITQRKHSM*LTHMVQSRLDSIF  2708

Range 6: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 67/77(87%) 0/77(0%) Plus/Minus
Query       92  ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR  322
                E GIQS*LNHMSQLHGMFSLRDRLRF VT IFGCLDEM*LIYYKP  HPSLRATP+ VSLLSRVP S*NL L PLGR
Subject   2478  EYGIQS*LNHMSQLHGMFSLRDRLRFGVTLIFGCLDEM*LIYYKPLLHPSLRATPQVVSLLSRVPFS*NLWLDPLGR  2708

Lettuce mosaic virus isolate CL427, complete genome

Sequence ID: KJ161180.1 Length: 10080 Number of Matches: 6

Range 1: 2474 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.0 bits(404) 0.0 76/77(99%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH
Subject   2474  IDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  2704

Range 2: 2467 to 2712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.4 bits(372) 0.0 69/82(84%) 0/82(0%) Minus/Plus
Query       88  FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSK  333
                +  RRPRG S RFHE+GTRDSSET RGVALNDGC +GL*YISYISSRHPKI VT NLSRSRNENIPCN*LIWFNHDWIP+S+
Subject   2467  YAYRRPRGSSQRFHENGTRDSSETTRGVALNDGCSNGL*YISYISSRHPKIRVTPNLSRSRNENIPCN*LIWFNHDWIPYSE  2712

Range 3: 2476 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 75/76(99%) 0/76(0%) Plus/Minus
Query       97  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS  324
                WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS
Subject   2476  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS  2703

Range 4: 2477 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 69/76(91%) 0/76(0%) Plus/Minus
Query       96  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV  323
                MESSRD*TI*VNYMECFRCVID*DS *L SSGVWMKCS*YITSR +IHH*GPLPELFHCYLACH REIF L+LWDV
Subject   2477  MESSRD*TI*VNYMECFRCVID*DSG*L*SSGVWMKCS*YITSRCYIHH*GPLPELFHCYLACHFREIFGLILWDV  2704

Range 5: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 69/77(90%) 0/77(0%) Minus/Plus
Query       92  TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  322
                TSQR K KISR+WHAR*Q*N+SGSGPQ*WM +RLVIY*LHFIQTPED+SY ES*SITQRKHSM*LTHMVQSRLDSIF
Subject   2478  TSQRIKPKISRKWHAR*Q*NNSGSGPQ*WM*QRLVIY*LHFIQTPEDQSYPES*SITQRKHSM*LTHMVQSRLDSIF  2708

Range 6: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 68/77(88%) 0/77(0%) Plus/Minus
Query       92  ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR  322
                E GIQS*LNHMSQLHGMFSLRDRLRF VT IFGCLDEM*LIYYKP  HPSLRATPR VSLLSRVP S*NL L PLGR
Subject   2478  EYGIQS*LNHMSQLHGMFSLRDRLRFGVTLIFGCLDEM*LIYYKPLLHPSLRATPRVVSLLSRVPFS*NLWLDPLGR  2708

Lettuce mosaic virus isolate CL427 ev, complete genome

Sequence ID: KJ161181.1 Length: 10080 Number of Matches: 6

Range 1: 2474 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.0 bits(404) 0.0 76/77(99%) 0/77(0%) Minus/Plus
Query       96  LDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  326
                +DVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH
Subject   2474  IDVPEDQAKDFTKMAREIAVKQLGEWPSMMDVATACNILATFHPDTRRSELPRILVDHATKTFHVIDSYGSITTGFH  2704

Range 2: 2467 to 2712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.4 bits(372) 0.0 69/82(84%) 0/82(0%) Minus/Plus
Query       88  FGLRRPRGPS*RFHEDGTRDSSETARGVALNDGCGDGL*YISYISSRHPKIGVTSNLSRSRNENIPCN*LIWFNHDWIPFSK  333
                +  RRPRG S RFHE+GTRDSSET RGVALNDGC +GL*YISYISSRHPKI VT NLSRSRNENIPCN*LIWFNHDWIP+S+
Subject   2467  YAYRRPRGSSQRFHENGTRDSSETTRGVALNDGCSNGL*YISYISSRHPKIRVTPNLSRSRNENIPCN*LIWFNHDWIPYSE  2712

Range 3: 2476 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 75/76(99%) 0/76(0%) Plus/Minus
Query       97  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLAWSSGTS  324
                WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA SSGTS
Subject   2476  WNPVVIEPYESITWNVFVA*STKIRGNSDLRVSG*NVANILQAVATSIIEGHSPSCFTAISRAIFVKSLA*SSGTS  2703

Range 4: 2477 to 2704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 69/76(91%) 0/76(0%) Plus/Minus
Query       96  MESSRD*TI*VNYMECFRCVID*DSR*LRSSGVWMKCS*YITSRRHIHH*GPLPELFHCYLACHLREIFSLVLWDV  323
                MESSRD*TI*VNYMECFRCVID*DS *L SSGVWMKCS*YITSR +IHH*GPLPELFHCYLACH REIF L+LWDV
Subject   2477  MESSRD*TI*VNYMECFRCVID*DSG*L*SSGVWMKCS*YITSRCYIHH*GPLPELFHCYLACHFREIFGLILWDV  2704

Range 5: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 69/77(90%) 0/77(0%) Minus/Plus
Query       92  TSQRTKLKISRRWHAR*Q*NSSGSGPQ*WMWRRLVIY*LHFIQTPEDRSYLES*SITQRKHSM*LTHMVQSRLDSIF  322
                TSQR K KISR+WHAR*Q*N+SGSGPQ*WM +RLVIY*LHFIQTPED+SY ES*SITQRKHSM*LTHMVQSRLDSIF
Subject   2478  TSQRIKPKISRKWHAR*Q*NNSGSGPQ*WM*QRLVIY*LHFIQTPEDQSYPES*SITQRKHSM*LTHMVQSRLDSIF  2708

Range 6: 2478 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 68/77(88%) 0/77(0%) Plus/Minus
Query       92  ENGIQS*LNHMSQLHGMFSLRDRLRFEVTPIFGCLDEM*LIYYKPSPHPSLRATPRAVSLLSRVPSS*NL*LGPLGR  322
                E GIQS*LNHMSQLHGMFSLRDRLRF VT IFGCLDEM*LIYYKP  HPSLRATPR VSLLSRVP S*NL L PLGR
Subject   2478  EYGIQS*LNHMSQLHGMFSLRDRLRFGVTLIFGCLDEM*LIYYKPLLHPSLRATPRVVSLLSRVPFS*NLWLDPLGR  2708