Queries
Nucleotide Sequence (512 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
230.9 | 516.0 | 14% | 9.233e-59 | 40% | KF688736.1 | |
228.1 | 530.3 | 27% | 6.174e-58 | 38% | KJ573505.1 | |
201.6 | 299.7 | 28% | 5.797e-50 | 43% | KT950836.1 | |
160.1 | 228.2 | 34% | 1.902e-37 | 38% | HE579627.1 | |
245.5 | 967.3 | 20% | 3.665e-63 | 60% | HE579619.1 |
Alignments
Botryosphaeria dothidea chrysovirus 1 isolate LW 1 segment RNA 1 putative RNA dependent RNA polymerase (RdRp) gene, complete cds
Sequence ID: KF688736.1 Length: 3654 Number of Matches: 5
Range 1: 1521 to 2030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.9 bits(499) | 0.0 | 90/170(53%) | 0/170(0%) | Minus/Plus |
Query 3 GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY 512 GR++G DIEAEIE+RT QK K+FF+DGRWSQ FD R EA+ D ++ +IGK L + D +E+FE FL+ RR WVKPG TG+PK DVYL+VP R+++L ++ E++ MT++VLKRVRLNKSA+FE P+FV++ ++AL DY PN++++ F K +P K RAL+ Subject 1521 GRLMGEEDIEAEIEDRTRLQKAKIFFEDGRWSQSAFDTRLGEAIQTAYDEVSANIGKVLVEMSDQVETFEAFLKNRRRWVKPGSATGSPKADVYLRVPGDRIEQLEELTTEISGMTVLVLKRVRLNKSAVFEFPEFVDMVKQALEDYVPNSFTKYFFKKEPSKVKSRALF 2030
Range 2: 1523 to 2032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 82/170(48%) | 0/170(0%) | Plus/Minus |
Query 1 GYSARPPSFPGFILQKLRE*AFGXXXXXXXXXXXTNWGISKSADLFKRTLFNTTMVIXXXXXXXXXXXFILDSGTLR*TSVFGAPVTGPGFTQRRLWRRNSSKDSMWSPRLASSFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR 510 G SAR +F G L+K FG+*S+SA + STN G S +ADLF+RT F+T VI S +S+S I GT R TS FG PV PGFT RR + R +SK S WS S+FP+ S+ AS R+SN+ CD PS K L FC VRSSISAS+S P+ R Subject 1523 GNSARDFTFEGSFLKKYFVKLFGT*SSSACFTISTNSGNSNTADLFRRTRFSTRTVIPLISVVSSSSCSIRSPGTRRYTSAFGEPVAEPGFTHRRRFFRKASKVSTWSDISTSTFPMLADTSSYAVWMASPKRVSNADCDQRPSSKKILAFCSRVRSSISASISSSPIRR 2032
Range 3: 1710 to 2003 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 43/98(44%) | 0/98(0%) | Plus/Minus |
Query 30 RLHFAEVARISVRLIISQCLLLQFHELGDLKEC*LIQAHPLQHYDGHISHFFRHIRQLLHP*LRHFEVNVSFWRPGYRSRLYPETPLAQEFFKRFHVV 323 RL EV R +VR II Q LL H+ L+ *L+QAHPLQ+ + H ++ + QLL P + +V+V F R G R+RLYP TP+ Q+ F+ F++V Subject 1710 RLFLEEVLREAVRNIILQRLLHHIHKFRKLEHR*LVQAHPLQYQNSHPTNLGG*LFQLLDPIPGYPQVHVGFRRAGRRARLYPSTPILQKSFEGFNLV 2003
Botryosphaeria dothidea chrysovirus isolate SNN58 RNA dependent RNA polymerase (RdRp) gene, complete cds
Sequence ID: KJ573505.1 Length: 3655 Number of Matches: 5
Range 1: 1522 to 2031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.1 bits(493) | 0.0 | 89/170(52%) | 0/170(0%) | Minus/Plus |
Query 3 GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY 512 GR++G DIEAEI +RT QK K+FF+DGRWSQ FD R EA+ D ++ +IGK L + D +E+FE FL+ RR WVKPG TG+PK DVYL+VP R+++L ++ E++ MT++VLKRVRLNKSA+FE P+FV++ ++AL DY PN++++ F K +P K RAL+ Subject 1522 GRLMGEEDIEAEIADRTRLQKAKIFFEDGRWSQSAFDTRLGEAIQTAYDEVSANIGKVLVEMSDQVETFEAFLKNRRRWVKPGSATGSPKADVYLRVPGDRIEQLEELTTEISGMTVLVLKRVRLNKSAVFEFPEFVDMVKQALEDYVPNSFTKYFFKKEPSKVKSRALF 2031
Range 2: 1524 to 2033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 81/170(48%) | 0/170(0%) | Plus/Minus |
Query 1 GYSARPPSFPGFILQKLRE*AFGXXXXXXXXXXXTNWGISKSADLFKRTLFNTTMVIXXXXXXXXXXXFILDSGTLR*TSVFGAPVTGPGFTQRRLWRRNSSKDSMWSPRLASSFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR 510 G SAR +F G L+K FG+*S+ A + STN G S +ADLF+RT F+T VI S +S+S IL GT + TS FG PV PGFT RR + R +SK S WS S+FPI S+ AS R+SN+ CD PS K L FC VRS+ISAS+S P+ R Subject 1524 GNSARDFTFEGSFLKKYFVKLFGT*SSRACFTMSTNSGNSNTADLFRRTRFSTRTVIPLISVVSSSSCSILSPGTRKYTSAFGEPVAEPGFTHRRRFFRKASKVSTWSDISTSTFPILADTSSYAVWMASPKRVSNADCDQRPSSKKILAFCSRVRSAISASISSSPIRR 2033
Range 3: 1711 to 2004 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 40/98(41%) | 0/98(0%) | Plus/Minus |
Query 30 RLHFAEVARISVRLIISQCLLLQFHELGDLKEC*LIQAHPLQHYDGHISHFFRHIRQLLHP*LRHFEVNVSFWRPGYRSRLYPETPLAQEFFKRFHVV 323 RL EV R ++R +I Q LL HE LK *L+ HPLQH + H ++ + QLL P R+ V VSF R G +R +P P+ QE + F++V Subject 1711 RLFLEEVLREAIRHVILQGLLHHVHEFWKLKHR*LV*THPLQHQNSHTANLGGQLFQLLDPVPRYP*VYVSFRRAGR*ARFHPPAPILQESLEGFNLV 2004
Range 4: 1748 to 2011 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 33/88(38%) | 0/88(0%) | Minus/Plus |
Query 23 GVSG*SLDL*PGRQKLTFTSKCLSQG*RSWRMWRKKWLI*PS*C*RGCA*ISQHSLRSPSSWNWSRRHWLIMSRTLIRATSAK*SLEK 286 G G*+L P +KLT+T L G SW+ + +* C* GC * SQ L +SW W + W I R R+TS++ SL + Subject 1748 GAGG*NLAQRPALRKLTYTYGYLGTGSSSWKS*PPRLAV*LFWC*SGCV*TSQRCLSFQNSWTW*SKPWRITCRIASRSTSSRKSLRR 2011
Penicillium janczewskii chrysovirus 2 segment RNA1 ORF1 gene, complete cds
Sequence ID: KT950836.1 Length: 3540 Number of Matches: 4
Range 1: 1391 to 1900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.6 bits(435) | 0.0 | 79/170(46%) | 0/170(0%) | Minus/Plus |
Query 3 GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY 512 GR+IGT DI+AEI +RT Q PK F G WS+ EFD RF AV D + + +G +L ++ + +++F+ F+ +RR WV+PG +GAPK D+ L+VP S+ + L ++ ++ MT+++L+RVRLNKSA+FE PQFV+ +EAL DY PN++++ F K +PGK RAL+ Subject 1391 GRVIGTEDIDAEIADRTRLQSPKKFCLGGEWSESEFDNRFTGAVQKAYDHLTQGLGAKLRAMTNVIDTFDHFMEERRTWVRPGAASGAPKADLMLEVPASQAEALDAISTDLGHMTVLILRRVRLNKSAVFEFPQFVDTVKEALRDYVPNSFTKYFFKFEPGKFASRALF 1900
Range 2: 1393 to 1536 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 23/48(48%) | 0/48(0%) | Plus/Minus |
Query 367 SHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR 510 S+ TA +N LSNS DH P +N G V S+ISAS+S VP+ R Subject 1393 SYAFWTAPVNLLSNSDSDHSPPRQNFFGDWSRVLSAISASISSVPITR 1536
Uncultured totivirus genomic RNA containing putative RdRp, contig 525Pv1_454_1
Sequence ID: HE579627.1 Length: 727 Number of Matches: 3
Range 1: 121 to 630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(344) | 0.0 | 65/170(38%) | 0/170(0%) | Minus/Plus |
Query 3 GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY 512 GR G D++ E+ +RT+ + PK +F +G S+ EFDKRF EAV V D + + + + F+ F+ +R++WV+ G TG+PKTD+ LKVP + + +++++V + V+ +RLNK+A FE +F ++ ++AL DY PN+++R+F K + GK GRALY Subject 121 GRNFGVVDMDKELADRTSVRTPKWYFINGHRSEREFDKRFTEAVRVSYDYLGTKTLDSMLRVFEEYPDFDTFMEKRKMWVRAGSATGSPKTDIKLKVPANMRYAVEELSQDVLECGFRVITNIRLNKAATFEFKEFPDIVKKALGDYVPNSFTRHFTKHEVGKPEGRALY 630
Uncultured chrysovirus genomic RNA containing putative RdRp, contig 4Pv1_cloning_1
Sequence ID: HE579619.1 Length: 554 Number of Matches: 8
Range 1: 220 to 552 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.5 bits(531) | 0.0 | 102/111(92%) | 0/111(0%) | Minus/Plus |
Query 180 GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEE 512 GRIIGTNDIEAEIEERTNPQKPKVFFQDG+WSQEEFDKRFKEAVAVQCDSMARS+GK LASLGD +ESFEEFLR RRLWVKPG VTGAPK DVYLKVPES+MKELADVAEE Subject 220 GRIIGTNDIEAEIEERTNPQKPKVFFQDGKWSQEEFDKRFKEAVAVQCDSMARSMGKVLASLGDQVESFEEFLRHRRLWVKPGAVTGAPKADVYLKVPESKMKELADVAEE 552
Range 2: 222 to 527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 95/102(93%) | 0/102(0%) | Plus/Minus |
Query 205 FILDSGTLR*TSVFGAPVTGPGFTQRRLWRRNSSKDSMWSPRLASSFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR 510 FI DSGTLR*TS FGAPVT PGFTQRRLWRRNSSKDS SPRLAS+FPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMS VPMIR Subject 222 FIFDSGTLR*TSAFGAPVTAPGFTQRRLWRRNSSKDST*SPRLASTFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSLVPMIR 527
Range 3: 221 to 553 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 69/111(62%) | 0/111(0%) | Minus/Plus |
Query 179 VESSAQTTSKQK*KSAPIRKSPRCSSRMEGGHRRSSTNGSRKQSRCSAIQWLAR*ERSWLALVTTWNLLKNSCAKGVSG*SLDL*PGRQKLTFTSKCLSQG*RSWRMWRKK 511 V S A TSK K*+SAP R++PRCSS+M GHR++ST+GSR+Q R SA QWL R E+ WL V WN LK+ CA GVSG*SL+L*P +KLTFTS+C SQ *RS R W+K+ Subject 221 VGSLAPMTSKPK*RSAPTRRNPRCSSKMASGHRKNSTSGSRRQLRYSATQWLVRWEKYWLVSVIKWNPLKSFCAIGVSG*SLEL*PEHRKLTFTSRCPSQR*RS*RTWQKR 553
Range 4: 346 to 549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 42/68(62%) | 0/68(0%) | Plus/Minus |
Query 183 FRHIRQLLHP*LRHFEVNVSFWRPGYRSRLYPETPLAQEFFKRFHVVTKASQLLSYRASH*IALHRDC 386 F H+R LLH *L H EVNVSF G+ SRLYPETP+AQ+ FK FH++T+ SQ S+R SH*+AL+R+C Subject 346 FCHVR*LLHL*LGHLEVNVSFRCSGHSSRLYPETPMAQKLFKGFHLITETSQYFSHRTSH*VALYRNC 549
Range 5: 220 to 285 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 14/22(64%) | 0/22(0%) | Plus/Minus |
Query 447 GLLRIGALFYFCFDVVCADDST 512 G LR+GAL YF FDV+ A+D T Subject 220 GFLRVGALLYFGFDVIGANDPT 285
Range 6: 264 to 527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 56/88(64%) | 0/88(0%) | Minus/Plus |
Query 205 AHQSAKAQGVLPGWKXXXXXXXXXXXGSSRGAVRFNGSLDRKGAG*PW*PHGIF*RIPAPKASLGKAWTCNRGAKN*RLPQSA*VKDE 468 AHQ A+ QGVLP W+VVTG +RQ VQG S G VR NGS D K G* * GI *R+ AP ASLGKAW+C+R ++*RLPQ A VKDE Subject 264 AHQPAETQGVLPRWQVVTGRIRQAVQGGSCGTVRLNGSFDGKSTG*SR*SSGIL*RVSAP*ASLGKAWSCDRSTES*RLPQGARVKDE 527
Range 7: 359 to 517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 32/53(60%) | 0/53(0%) | Plus/Minus |
Query 215 TQAL*GKRQFLAPRLQVQALPRDAFGAGILQKIPCGHQG*PAPFLSSEPLNRT 373 T+A *GKRQ R Q+QALPRDA+GA LQ+IP H+ *P F S+EPL+RT Subject 359 TRAP*GKRQLSVLRSQLQALPRDAYGAETLQRIPLDHRD*PVLFPSNEPLSRT 517
Nucleotide Sequence (216 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
70.3 | 70.3 | 21% | 3.847e-11 | 63% | HE579593.1 | |
70.3 | 70.3 | 21% | 3.847e-11 | 63% | HE579598.1 | |
68.9 | 68.9 | 21% | 9.977e-11 | 61% | GQ290650.1 | |
68.9 | 68.9 | 21% | 9.977e-11 | 61% | GQ290651.1 | |
68.9 | 68.9 | 21% | 9.977e-11 | 61% | GQ290652.1 |
Alignments
Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_454_3
Sequence ID: HE579593.1 Length: 1414 Number of Matches: 1
Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_cloning_5
Sequence ID: HE579598.1 Length: 590 Number of Matches: 1
Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs131 RNA dependent RNA polymerase gene, complete cds
Sequence ID: GQ290650.1 Length: 2889 Number of Matches: 1
Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs132 RNA dependent RNA polymerase gene, complete cds
Sequence ID: GQ290651.1 Length: 2889 Number of Matches: 1
Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei BS321 RNA dependent RNA polymerase gene, complete cds
Sequence ID: GQ290652.1 Length: 2889 Number of Matches: 1
Nucleotide Sequence (180 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
70.3 | 70.3 | 26% | 2.023e-11 | 63% | HE579593.1 | |
70.3 | 70.3 | 26% | 2.023e-11 | 63% | HE579598.1 | |
68.9 | 68.9 | 26% | 5.246e-11 | 61% | GQ290650.1 | |
68.9 | 68.9 | 26% | 5.246e-11 | 61% | GQ290651.1 | |
68.9 | 68.9 | 26% | 5.246e-11 | 61% | GQ290652.1 |
Alignments
Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_454_3
Sequence ID: HE579593.1 Length: 1414 Number of Matches: 1
Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_cloning_5
Sequence ID: HE579598.1 Length: 590 Number of Matches: 1
Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs131 RNA dependent RNA polymerase gene, complete cds
Sequence ID: GQ290650.1 Length: 2889 Number of Matches: 1
Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs132 RNA dependent RNA polymerase gene, complete cds
Sequence ID: GQ290651.1 Length: 2889 Number of Matches: 1
Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei BS321 RNA dependent RNA polymerase gene, complete cds
Sequence ID: GQ290652.1 Length: 2889 Number of Matches: 1