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Queries

Nucleotide Sequence (512 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
52
104
156
208
260
312
364
416
468
512

Descriptions

Alignments

Botryosphaeria dothidea chrysovirus 1 isolate LW 1 segment RNA 1 putative RNA dependent RNA polymerase (RdRp) gene, complete cds

Sequence ID: KF688736.1 Length: 3654 Number of Matches: 5

Range 1: 1521 to 2030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.9 bits(499) 0.0 90/170(53%) 0/170(0%) Minus/Plus
Query        3  GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY  512
                GR++G  DIEAEIE+RT  QK K+FF+DGRWSQ  FD R  EA+    D ++ +IGK L  + D +E+FE FL+ RR WVKPG  TG+PK DVYL+VP  R+++L ++  E++ MT++VLKRVRLNKSA+FE P+FV++ ++AL DY PN++++ F K +P K   RAL+
Subject   1521  GRLMGEEDIEAEIEDRTRLQKAKIFFEDGRWSQSAFDTRLGEAIQTAYDEVSANIGKVLVEMSDQVETFEAFLKNRRRWVKPGSATGSPKADVYLRVPGDRIEQLEELTTEISGMTVLVLKRVRLNKSAVFEFPEFVDMVKQALEDYVPNSFTKYFFKKEPSKVKSRALF  2030

Range 2: 1523 to 2032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 82/170(48%) 0/170(0%) Plus/Minus
Query        1  GYSARPPSFPGFILQKLRE*AFGXXXXXXXXXXXTNWGISKSADLFKRTLFNTTMVIXXXXXXXXXXXFILDSGTLR*TSVFGAPVTGPGFTQRRLWRRNSSKDSMWSPRLASSFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR  510
                G SAR  +F G  L+K     FG+*S+SA  + STN G S +ADLF+RT F+T  VI   S  +S+S  I   GT R TS FG PV  PGFT RR + R +SK S WS    S+FP+     S+    AS  R+SN+ CD  PS K  L FC  VRSSISAS+S  P+ R
Subject   1523  GNSARDFTFEGSFLKKYFVKLFGT*SSSACFTISTNSGNSNTADLFRRTRFSTRTVIPLISVVSSSSCSIRSPGTRRYTSAFGEPVAEPGFTHRRRFFRKASKVSTWSDISTSTFPMLADTSSYAVWMASPKRVSNADCDQRPSSKKILAFCSRVRSSISASISSSPIRR  2032

Range 3: 1710 to 2003 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 43/98(44%) 0/98(0%) Plus/Minus
Query       30  RLHFAEVARISVRLIISQCLLLQFHELGDLKEC*LIQAHPLQHYDGHISHFFRHIRQLLHP*LRHFEVNVSFWRPGYRSRLYPETPLAQEFFKRFHVV  323
                RL   EV R +VR II Q LL   H+   L+  *L+QAHPLQ+ + H ++    + QLL P   + +V+V F R G R+RLYP TP+ Q+ F+ F++V
Subject   1710  RLFLEEVLREAVRNIILQRLLHHIHKFRKLEHR*LVQAHPLQYQNSHPTNLGG*LFQLLDPIPGYPQVHVGFRRAGRRARLYPSTPILQKSFEGFNLV  2003

Range 4: 1885 to 2028 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 19/48(40%) 0/48(0%) Minus/Plus
Query        5  GCA*ISQHSLRSPSSWNWSRRHWLIMSRTLIRATSAK*SLEKRGGARC  148
                GCA* SQ      + W W  + W IM RT  R+TS++ SL++     C
Subject   1885  GCA*TSQRCSSFRNLWIW*SKRWRIMFRTASRSTSSRKSLQR*SRVHC  2028

Range 5: 1748 to 1804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/19(47%) 0/19(0%) Minus/Plus
Query      229  ASLGKAWTCNRGAKN*RLP  285
                AS+GKAW  +R +++ R+P
Subject   1748  ASMGKAWLGDRLSESRRVP  1804

Botryosphaeria dothidea chrysovirus isolate SNN58 RNA dependent RNA polymerase (RdRp) gene, complete cds

Sequence ID: KJ573505.1 Length: 3655 Number of Matches: 5

Range 1: 1522 to 2031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.1 bits(493) 0.0 89/170(52%) 0/170(0%) Minus/Plus
Query        3  GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY  512
                GR++G  DIEAEI +RT  QK K+FF+DGRWSQ  FD R  EA+    D ++ +IGK L  + D +E+FE FL+ RR WVKPG  TG+PK DVYL+VP  R+++L ++  E++ MT++VLKRVRLNKSA+FE P+FV++ ++AL DY PN++++ F K +P K   RAL+
Subject   1522  GRLMGEEDIEAEIADRTRLQKAKIFFEDGRWSQSAFDTRLGEAIQTAYDEVSANIGKVLVEMSDQVETFEAFLKNRRRWVKPGSATGSPKADVYLRVPGDRIEQLEELTTEISGMTVLVLKRVRLNKSAVFEFPEFVDMVKQALEDYVPNSFTKYFFKKEPSKVKSRALF  2031

Range 2: 1524 to 2033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 81/170(48%) 0/170(0%) Plus/Minus
Query        1  GYSARPPSFPGFILQKLRE*AFGXXXXXXXXXXXTNWGISKSADLFKRTLFNTTMVIXXXXXXXXXXXFILDSGTLR*TSVFGAPVTGPGFTQRRLWRRNSSKDSMWSPRLASSFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR  510
                G SAR  +F G  L+K     FG+*S+ A  + STN G S +ADLF+RT F+T  VI   S  +S+S  IL  GT + TS FG PV  PGFT RR + R +SK S WS    S+FPI     S+    AS  R+SN+ CD  PS K  L FC  VRS+ISAS+S  P+ R
Subject   1524  GNSARDFTFEGSFLKKYFVKLFGT*SSRACFTMSTNSGNSNTADLFRRTRFSTRTVIPLISVVSSSSCSILSPGTRKYTSAFGEPVAEPGFTHRRRFFRKASKVSTWSDISTSTFPILADTSSYAVWMASPKRVSNADCDQRPSSKKILAFCSRVRSAISASISSSPIRR  2033

Range 3: 1711 to 2004 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 40/98(41%) 0/98(0%) Plus/Minus
Query       30  RLHFAEVARISVRLIISQCLLLQFHELGDLKEC*LIQAHPLQHYDGHISHFFRHIRQLLHP*LRHFEVNVSFWRPGYRSRLYPETPLAQEFFKRFHVV  323
                RL   EV R ++R +I Q LL   HE   LK  *L+  HPLQH + H ++    + QLL P  R+  V VSF R G  +R +P  P+ QE  + F++V
Subject   1711  RLFLEEVLREAIRHVILQGLLHHVHEFWKLKHR*LV*THPLQHQNSHTANLGGQLFQLLDPVPRYP*VYVSFRRAGR*ARFHPPAPILQESLEGFNLV  2004

Range 4: 1748 to 2011 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 33/88(38%) 0/88(0%) Minus/Plus
Query       23  GVSG*SLDL*PGRQKLTFTSKCLSQG*RSWRMWRKKWLI*PS*C*RGCA*ISQHSLRSPSSWNWSRRHWLIMSRTLIRATSAK*SLEK  286
                G  G*+L   P  +KLT+T   L  G  SW+    +  +*   C* GC * SQ  L   +SW W  + W I  R   R+TS++ SL +
Subject   1748  GAGG*NLAQRPALRKLTYTYGYLGTGSSSWKS*PPRLAV*LFWC*SGCV*TSQRCLSFQNSWTW*SKPWRITCRIASRSTSSRKSLRR  2011

Range 5: 1547 to 1633 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 14/29(48%) 0/29(0%) Minus/Plus
Query      401  SKQK*KSAPIRKSPRCSSRMEGGHRRSST  487
                S+ +*+ A   + PR SSRM  GH R ST
Subject   1547  SRLR*RIARGCRKPRSSSRMAAGHSRHST  1633

Penicillium janczewskii chrysovirus 2 segment RNA1 ORF1 gene, complete cds

Sequence ID: KT950836.1 Length: 3540 Number of Matches: 4

Range 1: 1391 to 1900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.6 bits(435) 0.0 79/170(46%) 0/170(0%) Minus/Plus
Query        3  GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY  512
                GR+IGT DI+AEI +RT  Q PK F   G WS+ EFD RF  AV    D + + +G +L ++ + +++F+ F+ +RR WV+PG  +GAPK D+ L+VP S+ + L  ++ ++  MT+++L+RVRLNKSA+FE PQFV+  +EAL DY PN++++ F K +PGK   RAL+
Subject   1391  GRVIGTEDIDAEIADRTRLQSPKKFCLGGEWSESEFDNRFTGAVQKAYDHLTQGLGAKLRAMTNVIDTFDHFMEERRTWVRPGAASGAPKADLMLEVPASQAEALDAISTDLGHMTVLILRRVRLNKSAVFEFPQFVDTVKEALRDYVPNSFTKYFFKFEPGKFASRALF  1900

Range 2: 1393 to 1536 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 23/48(48%) 0/48(0%) Plus/Minus
Query      367  SHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR  510
                S+   TA +N LSNS  DH P  +N  G    V S+ISAS+S VP+ R
Subject   1393  SYAFWTAPVNLLSNSDSDHSPPRQNFFGDWSRVLSAISASISSVPITR  1536

Range 3: 1756 to 1902 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 24/49(49%) 0/49(0%) Plus/Minus
Query        1  GYSARPPSFPGFILQKLRE*AFGXXXXXXXXXXXTNWGISKSADLFKRT  147
                G  AR  +FPG  L+K     FG+*S +AS + STN G S +ADL  RT
Subject   1756  GKRAREANFPGSNLKKYFVKLFGT*SLNASFTVSTN*GNSNTADLLSRT  1902

Range 4: 1627 to 1689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 9/21(43%) 0/21(0%) Plus/Minus
Query      214  DSGTLR*TSVFGAPVTGPGFT  276
                ++GT    S  GAP   PG T
Subject   1627  EAGTSSIRSALGAPDAAPGLT  1689

Uncultured totivirus genomic RNA containing putative RdRp, contig 525Pv1_454_1

Sequence ID: HE579627.1 Length: 727 Number of Matches: 3

Range 1: 121 to 630 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(344) 0.0 65/170(38%) 0/170(0%) Minus/Plus
Query        3  GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEEVADMTIVVLKRVRLNKSALFEIPQFVELEQEALADYEPNAYSRNFCKMKPGKEGGRALY  512
                GR  G  D++ E+ +RT+ + PK +F +G  S+ EFDKRF EAV V  D +       +  + +    F+ F+ +R++WV+ G  TG+PKTD+ LKVP +    + +++++V +    V+  +RLNK+A FE  +F ++ ++AL DY PN+++R+F K + GK  GRALY
Subject    121  GRNFGVVDMDKELADRTSVRTPKWYFINGHRSEREFDKRFTEAVRVSYDYLGTKTLDSMLRVFEEYPDFDTFMEKRKMWVRAGSATGSPKTDIKLKVPANMRYAVEELSQDVLECGFRVITNIRLNKAATFEFKEFPDIVKKALGDYVPNSFTRHFTKHEVGKPEGRALY  630

Range 2: 123 to 266 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 24/48(50%) 0/48(0%) Plus/Minus
Query      367  SHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR  510
                S+ T TAS+NRLSNS  D  P  K   G   LV S+ S SMS  P  R
Subject    123  SYDTRTASVNRLSNSRSDLCPLMKYHFGVRTLVLSASSLSMSTTPKFR  266

Range 3: 564 to 632 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 11/23(48%) 0/23(0%) Plus/Minus
Query        1  GYSARPPSFPGFILQKLRE*AFG  69
                GY ARP  FP     K R   FG
Subject    564  GYKARPSGFPTSCFVKWRVKLFG  632

Uncultured chrysovirus genomic RNA containing putative RdRp, contig 4Pv1_cloning_1

Sequence ID: HE579619.1 Length: 554 Number of Matches: 8

Range 1: 220 to 552 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.5 bits(531) 0.0 102/111(92%) 0/111(0%) Minus/Plus
Query      180  GRIIGTNDIEAEIEERTNPQKPKVFFQDGRWSQEEFDKRFKEAVAVQCDSMARSIGKELASLGDHMESFEEFLRQRRLWVKPGPVTGAPKTDVYLKVPESRMKELADVAEE  512
                GRIIGTNDIEAEIEERTNPQKPKVFFQDG+WSQEEFDKRFKEAVAVQCDSMARS+GK LASLGD +ESFEEFLR RRLWVKPG VTGAPK DVYLKVPES+MKELADVAEE
Subject    220  GRIIGTNDIEAEIEERTNPQKPKVFFQDGKWSQEEFDKRFKEAVAVQCDSMARSMGKVLASLGDQVESFEEFLRHRRLWVKPGAVTGAPKADVYLKVPESKMKELADVAEE  552

Range 2: 222 to 527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.6 bits(486) 0.0 95/102(93%) 0/102(0%) Plus/Minus
Query      205  FILDSGTLR*TSVFGAPVTGPGFTQRRLWRRNSSKDSMWSPRLASSFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSFVPMIR  510
                FI DSGTLR*TS FGAPVT PGFTQRRLWRRNSSKDS  SPRLAS+FPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMS VPMIR
Subject    222  FIFDSGTLR*TSAFGAPVTAPGFTQRRLWRRNSSKDST*SPRLASTFPIERAIESHCTATASLNRLSNSSCDHLPSWKNTLGFCGLVRSSISASMSLVPMIR  527

Range 3: 221 to 553 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 69/111(62%) 0/111(0%) Minus/Plus
Query      179  VESSAQTTSKQK*KSAPIRKSPRCSSRMEGGHRRSSTNGSRKQSRCSAIQWLAR*ERSWLALVTTWNLLKNSCAKGVSG*SLDL*PGRQKLTFTSKCLSQG*RSWRMWRKK  511
                V S A  TSK K*+SAP R++PRCSS+M  GHR++ST+GSR+Q R SA QWL R E+ WL  V  WN LK+ CA GVSG*SL+L*P  +KLTFTS+C SQ *RS R W+K+
Subject    221  VGSLAPMTSKPK*RSAPTRRNPRCSSKMASGHRKNSTSGSRRQLRYSATQWLVRWEKYWLVSVIKWNPLKSFCAIGVSG*SLEL*PEHRKLTFTSRCPSQR*RS*RTWQKR  553

Range 4: 346 to 549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 42/68(62%) 0/68(0%) Plus/Minus
Query      183  FRHIRQLLHP*LRHFEVNVSFWRPGYRSRLYPETPLAQEFFKRFHVVTKASQLLSYRASH*IALHRDC  386
                F H+R LLH *L H EVNVSF   G+ SRLYPETP+AQ+ FK FH++T+ SQ  S+R SH*+AL+R+C
Subject    346  FCHVR*LLHL*LGHLEVNVSFRCSGHSSRLYPETPMAQKLFKGFHLITETSQYFSHRTSH*VALYRNC  549

Range 5: 220 to 285 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 14/22(64%) 0/22(0%) Plus/Minus
Query      447  GLLRIGALFYFCFDVVCADDST  512
                G LR+GAL YF FDV+ A+D T
Subject    220  GFLRVGALLYFGFDVIGANDPT  285

Range 6: 264 to 527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 56/88(64%) 0/88(0%) Minus/Plus
Query      205  AHQSAKAQGVLPGWKXXXXXXXXXXXGSSRGAVRFNGSLDRKGAG*PW*PHGIF*RIPAPKASLGKAWTCNRGAKN*RLPQSA*VKDE  468
                AHQ A+ QGVLP W+VVTG +RQ VQG S G VR NGS D K  G*  *  GI *R+ AP ASLGKAW+C+R  ++*RLPQ A VKDE
Subject    264  AHQPAETQGVLPRWQVVTGRIRQAVQGGSCGTVRLNGSFDGKSTG*SR*SSGIL*RVSAP*ASLGKAWSCDRSTES*RLPQGARVKDE  527

Range 7: 359 to 517 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 32/53(60%) 0/53(0%) Plus/Minus
Query      215  TQAL*GKRQFLAPRLQVQALPRDAFGAGILQKIPCGHQG*PAPFLSSEPLNRT  373
                T+A *GKRQ    R Q+QALPRDA+GA  LQ+IP  H+ *P  F S+EPL+RT
Subject    359  TRAP*GKRQLSVLRSQLQALPRDAYGAETLQRIPLDHRD*PVLFPSNEPLSRT  517

Range 8: 263 to 304 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 10/14(71%) 0/14(0%) Plus/Minus
Query      428  HPGRTPWAFADWCA  469
                H GRTPW  A WCA
Subject    263  HLGRTPWVSAGWCA  304

Nucleotide Sequence (216 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
22
44
66
88
110
132
154
176
198
216

Descriptions

Alignments

Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_454_3

Sequence ID: HE579593.1 Length: 1414 Number of Matches: 1

Range 1: 348 to 485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 29/46(63%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +T K LH LVRTS +L    + E  RQ LMYMDLLVGRT Y
Subject    348  YDKWPNTMKELHTLVRTSRFLMHTEITERERQALMYMDLLVGRTSY  485

Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_cloning_5

Sequence ID: HE579598.1 Length: 590 Number of Matches: 1

Range 1: 339 to 476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 29/46(63%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +T K LH LVRTS +L    + E  RQ LMYMDLLVGRT Y
Subject    339  YDKWPNTMKELHTLVRTSRFLMHTEITERERQALMYMDLLVGRTSY  476

Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs131 RNA dependent RNA polymerase gene, complete cds

Sequence ID: GQ290650.1 Length: 2889 Number of Matches: 1

Range 1: 1207 to 1344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 28/46(61%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +  K LH LVRTS +L +  + E  RQ LMYMDLLVGRT Y
Subject   1207  YDKWPNILKELHTLVRTSRFLMNTEITEKERQALMYMDLLVGRTSY  1344

Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs132 RNA dependent RNA polymerase gene, complete cds

Sequence ID: GQ290651.1 Length: 2889 Number of Matches: 1

Range 1: 1207 to 1344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 28/46(61%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +  K LH LVRTS +L +  + E  RQ LMYMDLLVGRT Y
Subject   1207  YDKWPNILKELHTLVRTSRFLMNTEITEKERQALMYMDLLVGRTSY  1344

Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei BS321 RNA dependent RNA polymerase gene, complete cds

Sequence ID: GQ290652.1 Length: 2889 Number of Matches: 1

Range 1: 1207 to 1344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 28/46(61%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +  K LH LVRTS +L +  + E  RQ LMYMDLLVGRT Y
Subject   1207  YDKWPNILKELHTLVRTSRFLMNTEITEKERQALMYMDLLVGRTSY  1344

Nucleotide Sequence (180 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
18
36
54
72
90
108
126
144
162
180

Descriptions

Alignments

Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_454_3

Sequence ID: HE579593.1 Length: 1414 Number of Matches: 1

Range 1: 348 to 485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 29/46(63%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +T K LH LVRTS +L    + E  RQ LMYMDLLVGRT Y
Subject    348  YDKWPNTMKELHTLVRTSRFLMHTEITERERQALMYMDLLVGRTSY  485

Uncultured chrysovirus genomic RNA containing putative RdRp, contig 469Hv1_cloning_5

Sequence ID: HE579598.1 Length: 590 Number of Matches: 1

Range 1: 339 to 476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 29/46(63%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +T K LH LVRTS +L    + E  RQ LMYMDLLVGRT Y
Subject    339  YDKWPNTMKELHTLVRTSRFLMHTEITERERQALMYMDLLVGRTSY  476

Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs131 RNA dependent RNA polymerase gene, complete cds

Sequence ID: GQ290650.1 Length: 2889 Number of Matches: 1

Range 1: 1207 to 1344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 28/46(61%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +  K LH LVRTS +L +  + E  RQ LMYMDLLVGRT Y
Subject   1207  YDKWPNILKELHTLVRTSRFLMNTEITEKERQALMYMDLLVGRTSY  1344

Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs132 RNA dependent RNA polymerase gene, complete cds

Sequence ID: GQ290651.1 Length: 2889 Number of Matches: 1

Range 1: 1207 to 1344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 28/46(61%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +  K LH LVRTS +L +  + E  RQ LMYMDLLVGRT Y
Subject   1207  YDKWPNILKELHTLVRTSRFLMNTEITEKERQALMYMDLLVGRTSY  1344

Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei BS321 RNA dependent RNA polymerase gene, complete cds

Sequence ID: GQ290652.1 Length: 2889 Number of Matches: 1

Range 1: 1207 to 1344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 28/46(61%) 0/46(0%) Plus/Plus
Query        1  YDKWSDTFKALHNLVRTSNWLFDMPLNEVTRQNLMYMDLLVGRTQY  138
                YDKW +  K LH LVRTS +L +  + E  RQ LMYMDLLVGRT Y
Subject   1207  YDKWPNILKELHTLVRTSRFLMNTEITEKERQALMYMDLLVGRTSY  1344