Nucleotide Sequence (426 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
157.3 | 341.2 | 41% | 6.943e-38 | 36% | NC_013470 | |
89.0 | 89.0 | 28% | 2.476e-17 | 38% | NC_021222 | |
99.6 | 99.6 | 26% | 1.664e-20 | 41% | NC_010985 | |
63.4 | 157.6 | 33% | 3.069e-18 | 33% | NC_028498 | |
49.6 | 92.4 | 26% | 1.073e-12 | 31% | NC_030888 |
Alignments
Fusarium graminearum dsRNA mycovirus-4 dsRNA1, complete genome
Range 1: 1935 to 2297 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 73/121(60%) | 0/121(0%) | Plus/Plus |
Query 5 GDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMYTIA* 367 G V +PYRP EET +YYPER G RTY RALGNLLDNYGNP A WLN LLDWLE +++LLP +W DTVQDAARDYTS+LV VP+P RW+FEEW+ L L+ + + Y A* Subject 1935 GRKITVALPYRPCEETFVHMYYPERKSEGVERTYQRALGNLLDNYGNPMMADWLNKLLDWLEPQMELLPTDWLEDTVQDAARDYTSDLVRVPRPLRWTFEEWVHLCLSSDDSDPEWYMYA* 2297
Range 2: 2060 to 2293 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 40/78(51%) | 0/78(0%) | Minus/Minus |
Query 130 AMVYISVISSFGVRVSASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP*LS 363 A +Y S S + +HSSN R G GT T SLV*S AASCTVS S G+ S S+QS S FS A G P*LS Subject 2060 AYIYHSGSESSDDKHKCTHSSNVQRNGRGTRTRSLV*SRAASCTVSSSQSVGNSSICGSSQSSSLFSQSAIIGFP*LS 2293
Range 3: 1949 to 2008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
21.7 bits(41) | 0.0 | 12/20(60%) | 0/20(0%) | Minus/Minus |
Query 19 RSG*YRRATVSSMGR*GITT 78 RSG*Y VSS GR G T Subject 1949 RSG*YICTKVSSHGRYGKAT 2008
Range 4: 2058 to 2240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 22/61(36%) | 0/61(0%) | Minus/Minus |
Query 128 PFLKRPSFGLRNNYQLTGIVSGCVLHRVRCPFHW**VQSGLQPVKKSIQPLSSMRITVVIQ 310 P LK P+ R+ +Q+TG+V +L+R+ P *+ LQPV++ IQP+ I+V+++ Subject 2058 PLLKCPAQWARHTHQVTGVVPRRILYRILQPIGGQ*LHLWLQPVQQLIQPVRHHWISVIVE 2240
Range 5: 2047 to 2241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 24/65(37%) | 0/65(0%) | Plus/Plus |
Query 117 WEISWITTVIRMLLSG*MDFLTGWSPDWTYYQWNGHLTRCRTQPETIPVSW*LFRSPNDGRLRNG 311 W I T I+ +G*+ TGWS W+Y G R R + T PV+W + R+ G LR+G Subject 2047 WAIYSTITEIQ*WRTG*ISCWTGWSHRWSYCPPIGWRIRYRMRRGTTPVTWCVCRAHCAGHLRSG 2241
Cryphonectria parasitica bipartite mycovirus 1 strain 09269 segment RNA1, complete sequence
Range 1: 1526 to 1888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/121(38%) | 0/121(0%) | Plus/Plus |
Query 2 GGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMYTIA 364 G A IPYRP ET RL YPE +TYLRALGN LD GN WL ++WL+ +L P EW + + +RDY++ V VP+P++ F++W L + +E ++ A Subject 1526 GDGAMQQPIPYRPASETYLRLLYPEYGDLPTPQTYLRALGNYLDAAGNRAMEAWLTAFIEWLQPQLSYEPNEWPDNFKRMVSRDYSNVGVEVPRPRQIDFQQWRDLVVLGREAYRRLWRTA 1888
Curvularia thermal tolerance virus RNA1, complete sequence
Range 1: 1617 to 1952 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 46/112(41%) | 0/112(0%) | Plus/Plus |
Query 20 VVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMY 355 V IPYRP +ET RL YPE A +T+LR LGN LD GNP KWL G +DWLE ++ P W S+ + +RDY+ + +P+P+R +E+W L + P+++ ++ Subject 1617 VAIPYRPFKETYLRLLYPEYGSLEADQTWLRLLGNYLDAAGNPVTEKWLQGFMDWLEPQVVAPPQVWPSNFQRMVSRDYSGIGIEMPRPERMCYEQWRDLVVLPRDDYRQLW 1952
Penicillium aurantiogriseum bipartite virus 1 segment RNA 1 putative RdRp gene, complete cds
Range 1: 1578 to 1730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 27/51(53%) | 0/51(0%) | Plus/Plus |
Query 20 VVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNG 172 VVIPYRP ET RL YPE +T+LR LGN +D GNP +WL G Subject 1578 VVIPYRPFGETFLRLLYPEYGTLDVEQTWLRVLGNYIDAAGNPVTERWLQG 1730
Range 2: 1773 to 1898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 17/42(40%) | 0/42(0%) | Plus/Plus |
Query 215 EWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEE 340 +W S+ ++ +RDYT V VP+P+R S+E+W L + P+ E Subject 1773 QWPSNFLRMVSRDYTGVGVEVPRPERMSYEQWRDLVVLPRSE 1898
Range 3: 1697 to 1960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 29/88(33%) | 0/88(0%) | Minus/Minus |
Query 139 YAKGVKSPSTQAQAMVYISVISSFGVRVSASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP 402 Y G S + + + + S G + H S D R G GT+T + V*S + H S SNQS SP+SH + GLP Subject 1697 YISGS*SAVSSSSSAFQADLYSDLGRTTRSRHCSYDIRSGRGTSTPTPV*SRDTIRRKLEGHWANVASTCGSNQSSSPWSHRSVTGLP 1960
Sclerotium hydrophilum virus 1 isolate ShR#20 putative RNA-dependent RNA polymerase gene, complete cds
Range 1: 1743 to 1997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 26/85(31%) | 0/85(0%) | Plus/Plus |
Query 101 TYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMY 355 +Y+RA+GN +D GN +L G L WLE + + W D +Q Y +R+++EEWL L L K+ + ++ Subject 1743 SYMRAVGNYMDGAGNKLTRVFLEGYLTWLEGKGHHEGIRWREDDLQKMTGIYDGVAETFLPARRYTYEEWLDLVLVEKKVVQRVF 1997