Nucleotide Sequence (662 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
398.3 | 2376.7 | 57% | 5.159e-109 | 38% | DQ286725.2 | |
410.7 | 1411.6 | 29% | 9.735e-113 | 40% | NC_004724.1 | |
410.7 | 1411.6 | 29% | 9.735e-113 | 40% | AF314061.1 | |
408.9 | 1399.7 | 29% | 3.468e-112 | 40% | JX513891.1 | |
363.1 | 1146.4 | 43% | 2.155e-98 | 35% | AY881628.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 12
Range 1: 2276 to 2875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
398.3 bits(863) | 0.0 | 174/200(87%) | 0/200(0%) | Minus/Plus |
Query 43 IGKFLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR 642 IGKF RH LP SRDYAAMLS LVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGA PTAARLRSRMVSILG R LSLNLYGS TSRG FHCDYDAGY KDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVP ++S+ TQ+ L R Subject 2276 IGKFSRHHVLPLSRDYAAMLSSLRAVVSLLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGAFPTAARLRSRMVSILGERCLSLNLYGSFTSRGVFHCDYDAGYVKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPFYMSEATQNSLTR 2875
Range 2: 2360 to 2869 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
358.0 bits(775) | 0.0 | 158/170(93%) | 0/170(0%) | Plus/Minus |
Query 49 QNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQR 558 Q +L FG V GNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*IL ITRVVIAME+PARG+RTVQI*T*TP AKNRNHARPEPRGRG STNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQ+ Subject 2360 QRILSGFGHVEGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILHITRVVIAMENPARGKRTVQI*T*TPLAKNRNHARPEPRGRGESTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQK 2869
Range 3: 2271 to 2369 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 23/33(70%) | 0/33(0%) | Plus/Minus |
Query 549 KPKGNDRPQRKITSPRSLLNKGGSHDAKIFRSL 647 KPKG P KITSPRSLL +GG DAKIFRS+ Subject 2271 KPKGKRPPAAKITSPRSLLTRGGRDDAKIFRSV 2369
Range 4: 2275 to 2856 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
379.5 bits(822) | 0.0 | 170/194(88%) | 0/194(0%) | Plus/Minus |
Query 62 VCLDRWVGTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RKNFPI 643 V D GTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSF+*PAS*SQWK PREV+EPYKFKLR L+PRIETMRDLSLAAVG APISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTK + ++DNIAA*SL++GR *R+NFPI Subject 2275 VASDM*KGTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFT*PAS*SQWKTPREVKEPYKFKLRHLSPRIETMRDLSLAAVGKAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKRETTARSEDNIAA*SLDKGRT**RENFPI 2856
Range 5: 2277 to 2831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
369.9 bits(801) | 0.0 | 170/185(92%) | 0/185(0%) | Minus/Plus |
Query 87 SENFCVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSLK 641 SENF V+TSS QETTRRCYL WFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVL+PRPRGSGRAWFRFLARGV*V*ICTVLLPLAG SIAITTRVM RI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSLK Subject 2277 SENFRVITSSPCQETTRRCYLRCGRSFPFWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLSPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGFSIAITTRVM*RI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSLK 2831
Range 6: 2409 to 2627 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 71/73(97%) | 0/73(0%) | Plus/Minus |
Query 291 TKILNPSHNPRRNRNGKPRER*KNRTNLNLDASRQESKPCAT*ASRPWG*HQYRRQRGGNLST*RHSRTCNGL 509 TKILNPSHNPRRNRNGKPRER*KNRTNLNLD SRQESKPCAT*ASRPWG HQYRRQRGGNLST*RHSRTCNGL Subject 2409 TKILNPSHNPRRNRNGKPRER*KNRTNLNLDTSRQESKPCAT*ASRPWGKHQYRRQRGGNLST*RHSRTCNGL 2627
Range 7: 2667 to 2834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 56/56(100%) | 0/56(0%) | Plus/Minus |
Query 84 EL**RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQ 251 EL**RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQ Subject 2667 EL**RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQ 2834
Range 8: 2337 to 2369 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 10/11(91%) | 0/11(0%) | Plus/Minus |
Query 548 KTKGKRPPAAK 580 K KGKRPPAAK Subject 2337 KPKGKRPPAAK 2369
Range 9: 2275 to 2565 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 88/97(91%) | 0/97(0%) | Minus/Plus |
Query 353 DRKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVRFFY 643 DRKIFAS PPL KRLRGDVIF G FPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC PHGREAQVAHGFDSWRE SKFKFVRFFY Subject 2275 DRKIFASSRPPLVKRLRGDVIFAAGGRFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWCFPHGREAQVAHGFDSWREVSKFKFVRFFY 2565
Range 10: 2614 to 2757 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 48/48(100%) | 0/48(0%) | Minus/Plus |
Query 161 FKIFVSDYXXXXXXXXGSCFRHHSGDETENY*SRLRQVIRK**FTIEI 304 FKIFVSDYRR*GRDRRGSCFRHHSGDETENY*SRLRQVIRK**FTIEI Subject 2614 FKIFVSDYRR*GRDRRGSCFRHHSGDETENY*SRLRQVIRK**FTIEI 2757
Range 11: 1481 to 1915 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 55/145(38%) | 0/145(0%) | Minus/Plus |
Query 181 LPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGS 615 +PCS DY AML +A+GG+FP V M+R +Y G CYLAH RY AF + F + F +G+ P+ ARL+ ++ G L L + G SR AFHCDYD+ Y + L + + G E + S + + ++ + L+GS Subject 1481 VPCSVDYVAMLRYASGGKFPFVLMSRERYPEGRCYLAHLRYLCAFYCQSFRESDFSLGSWPSVARLKGVILKRFGEEALKLGVRGYYVSRNAFHCDYDSAYVRSLNRIVGYVGGVEVIPSTLVSTVALKVGERACDRPKSILFGS 1915
Range 12: 1483 to 1773 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 40/97(41%) | 0/97(0%) | Plus/Minus |
Query 323 S*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQG 613 S*SQ KA RE P +P+ + LS A G P K+ K KA YL+ AK*Q P L+I T G PP A NIA *S E G Subject 1483 S*SQ*KALRET**PRTPNFSASSPKRFKITPLSRATEGHEPKEKSDSLKD*Q*KAHRYLR*AK*QRPSG*RSLLINTNGNFPPLA*RNIAT*STEHG 1773
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 8
Range 1: 2264 to 2860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
410.7 bits(890) | 0.0 | 170/199(85%) | 0/199(0%) | Minus/Plus |
Query 43 GKFLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR 639 G+ LR D +PCSRDYAAMLSFAAGGRFPLV MTR+KYKNGYCYLAHCRYASAF+LKGFHPA FDIGANPTAA+LRSRMVS+LG R LSLNLYGS TSRG FHCDYDA Y KDLRF+SAI+AGKEE GEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVI+VP ++S+ TQ+ L R Subject 2264 GRLLRRDVIPCSRDYAAMLSFAAGGRFPLVLMTRDKYKNGYCYLAHCRYASAFLLKGFHPAVFDIGANPTAAKLRSRMVSVLGDRSLSLNLYGSFTSRGIFHCDYDAAYVKDLRFMSAIVAGKEEMGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIRVPFYMSEVTQNSLTR 2860
Range 2: 2263 to 2820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.1 bits(712) | 0.0 | 151/186(81%) | 0/186(0%) | Plus/Minus |
Query 83 GTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RKNFP 640 GTL+TGLSFF+L TSFLKSI+SFS+LNFN+ESLLPYNLS*TASIVFCFIAGV+SEATTSP+SSLPA IAD NLKSF+* AS*SQ K PR+V++PYKFKLR L+PR ETMRDLS AAVGLAP+SK AG KPF KALAYLQ AK*Q*PFLYL LVIKT GKRPPAA DNIAA*SLEQG S RK+ P Subject 2263 GTLITGLSFFRL*TSFLKSIRSFSMLNFNNESLLPYNLS*TASIVFCFIAGVISEATTSPISSLPATIADMNLKSFT*AAS*SQ*KIPRDVKDPYKFKLRLLSPRTETMRDLSFAAVGLAPMSKTAG*KPFRRKALAYLQ*AK*Q*PFLYLSLVIKTNGKRPPAANDNIAA*SLEQGMTSRRKSLP 2820
Range 3: 2333 to 2854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 86/174(49%) | 0/174(0%) | Plus/Minus |
Query 49 QNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETTA 570 Q VL F V + N+GS+ LQ L+VIL+IY +FL QFQ I+T++ P+VN F+S LFHRRS + SN+LS LT +R* +S*I I+RVVI +++ A R V I T T +RNHAR + R R VS N++ ++T Q K RVP + +TVT+L+ IPRH NQRETT+ Subject 2333 QRVLSDFRHVERHPNNGSILLQALNVILEIY*IFLYAQFQQRIVTTIQPIVNSFDSLLFHRRSYIRSNHLSHFLLTSHDR*HES*IFHISRVVITVKNTAGRERPV*IQTQTSVP*DRNHARSKLRRRRVSANVKNRRMKTLQKKSARVPTVSQVTVTVLVFIPRH*NQRETTS 2854
Range 4: 2274 to 2813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 91/180(51%) | 0/180(0%) | Minus/Plus |
Query 90 CVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSL 629 C TS QE T RC + VVS WF *RGI+ R VTV GTR *+V L LT R R RAWFR V*V*I T L A ITTR+M +I*D CQR VR++ ER LL LRR*NR+L K FT G V I *N* RK **I RMT R *R+ DP L Subject 2274 CAATSYPAQEITLRCCRLPQEVVSRWF**RGINTRTVTVTWLTVGTRALFF*RVFILRFLTLALTRRRRSLDRAWFRS*GTEV*V*IYTGLSRPAVFFTVITTRLM*KI*DSCQRSWLVRRKWERWLLLI*LRR*NRRLSKLFTIGCMVVTIRC*N*A*RKI**ISRMTFRA*RRIDPLL 2813
Range 5: 1481 to 1858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 51/126(40%) | 0/126(0%) | Minus/Plus |
Query 238 LPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDI 615 +PCS DY AML + +GG+FPLV M+R Y +G CY+AH RY AF + F + + +G+ P+ ARL++ ++ G L++ + G SR AFHCDYD+ Y + L L+ + G E +AS + Subject 1481 IPCSVDYVAMLRYVSGGKFPLVLMSRECYPDGLCYMAHMRYLCAFFCQPFRESDYPLGSWPSVARLKALVLKRFGDEALNIGVRGYYVSRRAFHCDYDSKYARSLMRLAGYVGGDEVIHSTLASTV 1858
Range 6: 2406 to 2813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 73/136(54%) | 0/136(0%) | Plus/Minus |
Query 90 **RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQXXXXXXXXXXXXXTKILNPSHNPRRNRNGKPRER*KNRTNLNLDASRQESKPCAT*ASRPWG*HQYRRQRGGNLST*RHSRT 497 **RV SS S RHS*NL LS SIS N Y+ T RK+L+* SVSSPE +KQ PL PY+ SLT ILN SH PRRN + K R *K R N N D KPCA *AS P G* Q ++ + N S + SRT Subject 2406 **RVYPSSGSERHS*NLLDLSLCSISTTNRYYHTTYRKQLR*SSVSSPELYQKQPPLPFPPYQPRSLT*ILNLSHKPRRNHSEKYRGT*KTRINSNSDFCPLGPKPCAI*ASPPSG*RQCQKPQDENPSEEKRSRT 2813
Range 7: 2245 to 2550 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 45/102(44%) | 0/102(0%) | Minus/Plus |
Query 353 GVFGRDRKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVRFFY 658 G F R A L KRLR DV+ RSFP GF DE *+ E LLL L VRE E F +W *P G EA +AHGF + S+F+F+R F+ Subject 2245 GTFDAGR*ALAPRRHTLLKRLRCDVVVCRRRSFPVGFNDEG*IQERLLLLGSL*VRERFSSEGFSSCGF*HWR*PDGGEA*IAHGFGPRGQKSEFEFIRVFH 2550
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 8
Range 1: 2264 to 2860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
410.7 bits(890) | 0.0 | 170/199(85%) | 0/199(0%) | Minus/Plus |
Query 43 GKFLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR 639 G+ LR D +PCSRDYAAMLSFAAGGRFPLV MTR+KYKNGYCYLAHCRYASAF+LKGFHPA FDIGANPTAA+LRSRMVS+LG R LSLNLYGS TSRG FHCDYDA Y KDLRF+SAI+AGKEE GEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVI+VP ++S+ TQ+ L R Subject 2264 GRLLRRDVIPCSRDYAAMLSFAAGGRFPLVLMTRDKYKNGYCYLAHCRYASAFLLKGFHPAVFDIGANPTAAKLRSRMVSVLGDRSLSLNLYGSFTSRGIFHCDYDAAYVKDLRFMSAIVAGKEEMGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIRVPFYMSEVTQNSLTR 2860
Range 2: 2263 to 2820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.1 bits(712) | 0.0 | 151/186(81%) | 0/186(0%) | Plus/Minus |
Query 83 GTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RKNFP 640 GTL+TGLSFF+L TSFLKSI+SFS+LNFN+ESLLPYNLS*TASIVFCFIAGV+SEATTSP+SSLPA IAD NLKSF+* AS*SQ K PR+V++PYKFKLR L+PR ETMRDLS AAVGLAP+SK AG KPF KALAYLQ AK*Q*PFLYL LVIKT GKRPPAA DNIAA*SLEQG S RK+ P Subject 2263 GTLITGLSFFRL*TSFLKSIRSFSMLNFNNESLLPYNLS*TASIVFCFIAGVISEATTSPISSLPATIADMNLKSFT*AAS*SQ*KIPRDVKDPYKFKLRLLSPRTETMRDLSFAAVGLAPMSKTAG*KPFRRKALAYLQ*AK*Q*PFLYLSLVIKTNGKRPPAANDNIAA*SLEQGMTSRRKSLP 2820
Range 3: 2333 to 2854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 86/174(49%) | 0/174(0%) | Plus/Minus |
Query 49 QNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETTA 570 Q VL F V + N+GS+ LQ L+VIL+IY +FL QFQ I+T++ P+VN F+S LFHRRS + SN+LS LT +R* +S*I I+RVVI +++ A R V I T T +RNHAR + R R VS N++ ++T Q K RVP + +TVT+L+ IPRH NQRETT+ Subject 2333 QRVLSDFRHVERHPNNGSILLQALNVILEIY*IFLYAQFQQRIVTTIQPIVNSFDSLLFHRRSYIRSNHLSHFLLTSHDR*HES*IFHISRVVITVKNTAGRERPV*IQTQTSVP*DRNHARSKLRRRRVSANVKNRRMKTLQKKSARVPTVSQVTVTVLVFIPRH*NQRETTS 2854
Range 4: 2274 to 2813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 91/180(51%) | 0/180(0%) | Minus/Plus |
Query 90 CVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSL 629 C TS QE T RC + VVS WF *RGI+ R VTV GTR *+V L LT R R RAWFR V*V*I T L A ITTR+M +I*D CQR VR++ ER LL LRR*NR+L K FT G V I *N* RK **I RMT R *R+ DP L Subject 2274 CAATSYPAQEITLRCCRLPQEVVSRWF**RGINTRTVTVTWLTVGTRALFF*RVFILRFLTLALTRRRRSLDRAWFRS*GTEV*V*IYTGLSRPAVFFTVITTRLM*KI*DSCQRSWLVRRKWERWLLLI*LRR*NRRLSKLFTIGCMVVTIRC*N*A*RKI**ISRMTFRA*RRIDPLL 2813
Range 5: 1481 to 1858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.4 bits(276) | 0.0 | 51/126(40%) | 0/126(0%) | Minus/Plus |
Query 238 LPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDI 615 +PCS DY AML + +GG+FPLV M+R Y +G CY+AH RY AF + F + + +G+ P+ ARL++ ++ G L++ + G SR AFHCDYD+ Y + L L+ + G E +AS + Subject 1481 IPCSVDYVAMLRYVSGGKFPLVLMSRECYPDGLCYMAHMRYLCAFFCQPFRESDYPLGSWPSVARLKALVLKRFGDEALNIGVRGYYVSRRAFHCDYDSKYARSLMRLAGYVGGDEVIHSTLASTV 1858
Range 6: 2406 to 2813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 73/136(54%) | 0/136(0%) | Plus/Minus |
Query 90 **RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQXXXXXXXXXXXXXTKILNPSHNPRRNRNGKPRER*KNRTNLNLDASRQESKPCAT*ASRPWG*HQYRRQRGGNLST*RHSRT 497 **RV SS S RHS*NL LS SIS N Y+ T RK+L+* SVSSPE +KQ PL PY+ SLT ILN SH PRRN + K R *K R N N D KPCA *AS P G* Q ++ + N S + SRT Subject 2406 **RVYPSSGSERHS*NLLDLSLCSISTTNRYYHTTYRKQLR*SSVSSPELYQKQPPLPFPPYQPRSLT*ILNLSHKPRRNHSEKYRGT*KTRINSNSDFCPLGPKPCAI*ASPPSG*RQCQKPQDENPSEEKRSRT 2813
Range 7: 2245 to 2550 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 45/102(44%) | 0/102(0%) | Minus/Plus |
Query 353 GVFGRDRKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVRFFY 658 G F R A L KRLR DV+ RSFP GF DE *+ E LLL L VRE E F +W *P G EA +AHGF + S+F+F+R F+ Subject 2245 GTFDAGR*ALAPRRHTLLKRLRCDVVVCRRRSFPVGFNDEG*IQERLLLLGSL*VRERFSSEGFSSCGF*HWR*PDGGEA*IAHGFGPRGQKSEFEFIRVFH 2550
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 8
Range 1: 2252 to 2848 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
408.9 bits(886) | 0.0 | 169/199(85%) | 0/199(0%) | Minus/Plus |
Query 43 GKFLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR 639 G+ LR D +PCSRDYAAMLSFAAGGRFPLV MTR+KYKNGYCYLAHCRYASAF+LKGFHPA FDIGANPTAA+LRSRMVS+LG R LSLNLYGS TSRG FHCDYDA Y KDLRF+SAI+AGKEE GEVVASDITPAMKQKTIEAVYDRLYG NDSLLKLSIEKDLIDFKNDVQSLKKDRPVI+VP ++S+ TQ+ L R Subject 2252 GRLLRRDVIPCSRDYAAMLSFAAGGRFPLVLMTRDKYKNGYCYLAHCRYASAFLLKGFHPAVFDIGANPTAAKLRSRMVSVLGDRSLSLNLYGSFTSRGIFHCDYDAAYVKDLRFMSAIVAGKEEMGEVVASDITPAMKQKTIEAVYDRLYGGNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIRVPFYMSEVTQNSLTR 2848
Range 2: 2251 to 2808 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.9 bits(705) | 0.0 | 150/186(81%) | 0/186(0%) | Plus/Minus |
Query 83 GTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RKNFP 640 GTL+TGLSFF+L TSFLKSI+SFS+LNFN+ESL PYNLS*TASIVFCFIAGV+SEATTSP+SSLPA IAD NLKSF+* AS*SQ K PR+V++PYKFKLR L+PR ETMRDLS AAVGLAP+SK AG KPF KALAYLQ AK*Q*PFLYL LVIKT GKRPPAA DNIAA*SLEQG S RK+ P Subject 2251 GTLITGLSFFRL*TSFLKSIRSFSMLNFNNESLPPYNLS*TASIVFCFIAGVISEATTSPISSLPATIADMNLKSFT*AAS*SQ*KIPRDVKDPYKFKLRLLSPRTETMRDLSFAAVGLAPMSKTAG*KPFRRKALAYLQ*AK*Q*PFLYLSLVIKTNGKRPPAANDNIAA*SLEQGMTSRRKSLP 2808
Range 3: 2321 to 2842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 85/174(49%) | 0/174(0%) | Plus/Minus |
Query 49 QNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETTA 570 Q VL F V + N+GS+ LQ L+VIL+IY +FL QFQ I+T++ P+VN F+S LFHRRS + SN+LS LT +R* +S*I I+RVVI +++ A R V I T T +RNHAR + R R VS N++ ++T Q K RVP + +T+T+L+ IPRH NQRETT+ Subject 2321 QRVLSDFRHVERHPNNGSILLQALNVILEIY*IFLYAQFQQRIVTTIQPIVNSFDSLLFHRRSYIRSNHLSHFLLTSHDR*HES*IFHISRVVITVKNTAGRERPV*IQTQTSVP*DRNHARSKLRRRRVSANVKNRRMKTLQKKSARVPTVSQVTITVLVFIPRH*NQRETTS 2842
Range 4: 2262 to 2801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 90/180(50%) | 0/180(0%) | Minus/Plus |
Query 90 CVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSL 629 C TS QE T RC + VVS WF *RGI+ R V V GTR *+V L LT R R RAWFR V*V*I T L A ITTR+M +I*D CQR VR++ ER LL LRR*NR+L K FT G V I *N* RK **I RMT R *R+ DP L Subject 2262 CAATSYPAQEITLRCCRLPQEVVSRWF**RGINTRTVIVTWLTVGTRALFF*RVFILRFLTLALTRRRRSLDRAWFRS*GTEV*V*IYTGLSRPAVFFTVITTRLM*KI*DSCQRSWLVRRKWERWLLLI*LRR*NRRLSKLFTIGCMVVTIRC*N*A*RKI**ISRMTFRA*RRIDPLL 2801
Range 5: 1469 to 1846 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 51/126(40%) | 0/126(0%) | Minus/Plus |
Query 238 LPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDI 615 +PCS DY AML + +GG+FPLV M+R Y +G CY+AH RY AF + F + + +G+ P+ ARL++ ++ G L++ + G SR AFHCDYD+ Y + L L + G E +AS + Subject 1469 IPCSVDYVAMLRYVSGGKFPLVLMSRECYPDGLCYMAHMRYLCAFFCQPFRESDYPLGSWPSVARLKALVLKRFGDEALNIGVRGYYVSRRAFHCDYDSKYARSLMRLVGHVGGDEVIHSTLASTV 1846
Range 6: 2394 to 2801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 73/136(54%) | 0/136(0%) | Plus/Minus |
Query 90 **RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQXXXXXXXXXXXXXTKILNPSHNPRRNRNGKPRER*KNRTNLNLDASRQESKPCAT*ASRPWG*HQYRRQRGGNLST*RHSRT 497 **RV SS S RHS*NL LS SIS N Y T RK+L+* SVSSPE +KQ PL PY+ SLT ILN SH PRRN + K R *K R N N D KPCA *AS P G* Q ++ + N S + SRT Subject 2394 **RVYPSSGSERHS*NLLDLSLCSISTTNRYHHTTYRKQLR*SSVSSPELYQKQPPLPFPPYQPRSLT*ILNLSHKPRRNHSEKYRGT*KTRINSNSDFCPLGPKPCAI*ASPPSG*RQCQKPQDENPSEEKRSRT 2801
Range 7: 2233 to 2538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 45/102(44%) | 0/102(0%) | Minus/Plus |
Query 353 GVFGRDRKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVRFFY 658 G F R A L KRLR DV+ RSFP GF DE *+ E LLL L VRE E F +W *P G EA +AHGF + S+F+F+R F+ Subject 2233 GTFDAGR*ALAPRRHTLLKRLRCDVVVCRRRSFPVGFNDEG*IQERLLLLGSL*VRERFSSEGFSSCGF*HWR*PDGGEA*IAHGFGPRGQKSEFEFIRVFH 2538
Grapevine leafroll associated virus 2 isolate 93/955, complete genome
Sequence ID: AY881628.1 Length: 16494 Number of Matches: 9
Range 1: 2287 to 2877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
363.1 bits(786) | 0.0 | 153/197(78%) | 0/197(0%) | Minus/Plus |
Query 43 FLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR 633 FLR+DFLPCS DYAAM SFAAGGRFPLV MTR KY NG+CYLAHCRYA AF+LKGF P FDIGA PTAA LR RMVS+LG R L LNLYG+ TSRG FHCDYDA Y KDLR +SA+IAGK+ EVV SDITPAMKQKTIEAVYDRLYG DSLLKLSIEKDLIDFKNDVQSLKKDRP++KVP ++S+ TQ+ L R Subject 2287 FLRYDFLPCSVDYAAMFSFAAGGRFPLVLMTRIKYLNGFCYLAHCRYACAFLLKGFDPKRFDIGAFPTAADLRRRMVSVLGDRSLGLNLYGAYTSRGVFHCDYDAKYIKDLRRMSAVIAGKDGVEEVVPSDITPAMKQKTIEAVYDRLYGGTDSLLKLSIEKDLIDFKNDVQSLKKDRPIVKVPFYMSEATQNSLTR 2877
Range 2: 2289 to 2858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.9 bits(574) | 0.0 | 130/190(68%) | 0/190(0%) | Plus/Minus |
Query 62 VCLDRWVGTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RK 631 V D GTL G SFF+LCTSFLKSIKSFS+L+F++ES+ PYNLS TASIVFCFIAGVMSE TTS S PAI AD KSF AS*SQ K PR+V PYKFK + L+P ET+R L AAVG AP+SK G KPFN A AY Q AK*Q PF YL LVI+TKGKRPPAAK+NIAA*S EQG+KS*RK Subject 2289 VASDM*KGTLTIGRSFFRLCTSFLKSIKSFSMLSFSNESVPPYNLSYTASIVFCFIAGVMSEGTTSSTPSFPAITADIRRKSFIYFAS*SQ*KTPRDVYAPYKFKPKLLSPSTETIRLLRSAAVGKAPMSKRFGSKPFNKNAHAYRQ*AK*QNPFRYLILVIRTKGKRPPAAKENIAA*STEQGKKS*RK 2858
Range 3: 2353 to 2877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 75/175(43%) | 0/175(0%) | Plus/Minus |
Query 43 SGQNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETT 567 + Q +L F V G+F+D S+FLQTL+V+ ++ VFLD Q Q + ++ ++ GFN L H RS V NYL L+ NR +*I I R+VI M++ A R VQI *T K+RNH + R G ST+++ V+TF K R+PAM *IT I IL H+N RE T Subject 2353 TSQRILSCFRHVKGDFDDWSIFLQTLYVVFEVD*VFLDAQLQQRVGAAIQSIIYGFNRLLLHSRSYVRRNYLFYPVLSSYNRRHTT*IFYILRIVITMKNAA*RVRAVQIQA*TSITKHRNHTSSKVRRGGKSTDVKTLRVKTF*QKRARIPAMS*ITEPI*ILDSSHQN*REAT 2877
Range 4: 1489 to 1863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 52/125(42%) | 0/125(0%) | Minus/Plus |
Query 235 CSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDIT 609 CS DY AML + GG+FPLV M+R Y++G+CYLAH RY AF + F + + +G+ PT ARL++ + G + L G TSR +HCDYD+ Y + R LS + G + S IT Subject 1489 CSVDYVAMLRYVCGGKFPLVLMSRINYQDGHCYLAHMRYLCAFYCRPFRESDYALGSWPTVARLKACVEKNFGVEACGIALRGYYTSRNVYHCDYDSSYMRGFRNLSGRVGGGSFDPSSLTSVIT 1863
Range 5: 2288 to 2833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 80/182(44%) | 0/182(0%) | Minus/Plus |
Query 87 FCVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSLK 632 FCV LV T RC+L R V SL F * SI M +VI* IAG R C*KV T VL P R WFR L V* *ICT A I IT R + +I C+RL R +R* L T L *+R+ LKP+ *+* SRKT* + T RV*RK D S K Subject 2288 FCVTIFCLVPWTMLRCFLLRRVVASL*F**LESSI*MGSVI*LIAGMRARFC*KVLTRSVLTSVLFPPRRTLEDVWFRCLVIEV*A*ICTARTRHAAFFIVITMRSI*KIYVVCRRL*LERTG*KR*FLLT*LLL*SRRRLKPYMIDCMAAPTRC*S*ASRKT*STSKTTYRV*RKIDQSSK 2833
Range 6: 2280 to 2558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 33/93(35%) | 0/93(0%) | Minus/Plus |
Query 362 RKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVR 640 + +FA LF+ L DV F G S PF D V +W+LLFS L V ++V+RF P + C H +GF +W + +FVR Subject 2280 KSLFALRFFALFRGLCCDVFFCGGWSLPFSSDD*NQVSKWVLLFSSLPVCVRVFVKRF*PEAF*HRCFSHRGGP*KTYGFGAW**KFRLEFVR 2558
Range 7: 1476 to 1616 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 21/47(45%) | 0/47(0%) | Plus/Minus |
Query 482 KALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS 622 KA Y WA+*Q P L L+++T+G PP +IA *S EQ S Subject 1476 KAHRYRIWAR*QCPSW*LILLMRTRGNFPPHTYRSIAT*STEQATAS 1616