Nucleotide Sequence (563 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Botryosphaeria dothidea virus 1 strain YZN115 RNA-dependent RNA polymerase (RdRp) gene, complete cds
Range 1: 1272 to 1514 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 48/81(59%) | 0/81(0%) | Plus/Plus |
Query 314 MSDIWKWDSFIREVLLELGIDNIEMAVNRADLDSPALAARAAMMGVSKRQLMHKLVEHPSGYLVDLYGAMPSGSYYTSLLN 556 MSDI KWD+ + E L+ D +E AV+ + L A A RA M+ V++RQLM KLVEHPSGYLV L G MPSGSYYTSL+N Subject 1272 MSDIEKWDANMCEALMGYAFDLLESAVDTSQLTDHARATRALMVRVARRQLMEKLVEHPSGYLVWLSGCMPSGSYYTSLIN 1514
Range 2: 1032 to 1244 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 47/71(66%) | 0/71(0%) | Plus/Plus |
Query 71 AKRRKDGTIEPPIPRFIFNLSPINYALAVFLHGDLSHELQEKDVTHXXXXXXXXXXXXXXLDVVENAFKGG 283 A + + G P+PR IFN+SPINYALAVFLHGDLS +LQE D THGPGFGPGRGR++ FLD++E A GG Subject 1032 AXKMRGGERVAPVPRLIFNVSPINYALAVFLHGDLSKKLQEFDPTHGPGFGPGRGRATVFLDLLERAAGGG 1244
Range 3: 1202 to 1513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 45/104(43%) | 0/104(0%) | Minus/Minus |
Query 244 LRRDV**EPLGMAP*RSTRYPDGCSTSLCMSWRFDTPIMAALAARAGESRSALLTAISMLSIPNSSRTSRMNESHFQMSDMTIGSSGWSLNPPLNAFSTTSKNL 555 L +V**EPLG+ P TR PDGCSTS MS R T M A ARA + TA S S R S M SHF MSDM + + PP S + K + Subject 1202 LMSEV**EPLGIHPESHTR*PDGCSTSFSMSCRRATRTMRARVARA*SVSWLVSTADSRRSKA*PIRASHMLASHFSMSDMENAPALLNTPPPAALSSRSRKTV 1513
Range 4: 1095 to 1217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 20/41(49%) | 0/41(0%) | Minus/Minus |
Query 134 IQELR*TPTARAETRPVSHIFLLEFMGEVPMEKDGKSVVDR 256 IQE R T R++ VS + LL+ + EV MEK G+S+VDR Subject 1095 IQEDRRAATPRSKAGTVSRVELLKLLAEVTMEKHGESIVDR 1217
Range 5: 965 to 1045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 15/27(56%) | 0/27(0%) | Minus/Minus |
Query 1 RRFAAFGSSLPNESVGC*VVSSHLGAL 81 R A GS LPN S G VVS H+G L Subject 965 RILXALGSFLPNVSTGWVVVSIHVGTL 1045
Range 6: 966 to 1067 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 19/34(56%) | 0/34(0%) | Plus/Plus |
Query 2 RAPKWLETTQQPTLSFGKDEPKAAKRRKDGTIEP 103 R P W+ETT QP L+FGK EPKA K R + P Subject 966 RVPTWIETTTQPVLTFGKKEPKAXKMRGGERVAP 1067
Range 7: 1397 to 1513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 15/39(38%) | 0/39(0%) | Plus/Plus |
Query 439 HDGRVETPTHAQAG*TPIRVPC*PLRRHAEWLLLHIPPQ 555 H R H +A * +R+P LR +A+ LLLH+ Q Subject 1397 HGARRTPAAHGEAR*ASVRLPSVALRVYAQRLLLHLTHQ 1513
Range 8: 1096 to 1218 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 16/41(39%) | 0/41(0%) | Plus/Plus |
Query 135 RSTTLLPSFSMGTSPMNSKRKM*LTGRVSALAVGVHLSSWM 257 RST L P FSM TS + + LT V SSW+ Subject 1096 RSTMLSPCFSMVTSARSFRSSTRLTVPALDRGVAARRSSWI 1218
Range 9: 1272 to 1514 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 27/81(33%) | 0/81(0%) | Minus/Minus |
Query 314 VEEGCVIGATRHGAVEVNKVP*WVFNQLVHELAFRHAHHGSSGCEGGGIKISSINSHLNVVNTQFQQNLTNERVPFPDV*H 556 V+E V+GA H E + V * + N+L+HEL AHH S+G G +++ ++ L V + L + +P DV H Subject 1272 VDE*GVVGAAGHTPGEPH*VA*RMLNELLHELPACDAHHESTGGAGVIGELAGVDGGLEEVEGVAHKGLAHVGIPLLDVGH 1514
Cladosporium cladosporioides virus 1 putative RNA-dependent RNA polymerase gene, complete cds
Range 1: 1268 to 1513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 44/82(54%) | 0/82(0%) | Plus/Plus |
Query 311 VMSDIWKWDSFIREVLLELGIDNIEMAVNRADLDSPALAARAAMMGVSKRQLMHKLVEHPSGYLVDLYGAMPSGSYYTSLLN 556 +MSDI KWD+ + E LL D +E V+++ LD+ A R M V+KRQLM KL+EHPSGYL++L+G MPSGS+YTS +N Subject 1268 IMSDIAKWDANMSEALLSATFDLMESVVDKSSLDATGRATRRIMADVAKRQLMVKLIEHPSGYLLELFGCMPSGSFYTSCVN 1513
Range 2: 1031 to 1168 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 30/46(65%) | 0/46(0%) | Plus/Plus |
Query 71 AKRRKDGTIEPPIPRFIFNLSPINYALAVFLHGDLSHELQEKDVTH 208 A + +G PP+PRFIFN SP+NYALA FLHGDLSH+LQ +D TH Subject 1031 AAKLVNGVRTPPVPRFIFNPSPVNYALAAFLHGDLSHQLQTRDPTH 1168
Range 3: 965 to 1039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 15/25(60%) | 0/25(0%) | Plus/Plus |
Query 2 RAPKWLETTQQPTLSFGKDEPKAAK 76 R W + TQQP +SFGK E KAAK Subject 965 RRAPWADFTQQPVMSFGKKEAKAAK 1039
Range 4: 1270 to 1503 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 33/78(42%) | 0/78(0%) | Minus/Minus |
Query 313 DV**EPLGMAP*RSTRYPDGCSTSLCMSWRFDTPIMAALAARAGESRSALLTAISMLSIPNSSRTSRMNESHFQMSDM 546 +V* EPLGM P S++ P+GCS S MS F T + L A SR L T +S+ S ++ S M SH MS M Subject 1270 EV*KEPLGMQPKSSSK*PEGCSISFTMSCLFATSAIILLVALPVASRDDLSTTLSIRSKVADNKASDMLASHLAMSLM 1503
Range 5: 1048 to 1137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 16/30(53%) | 0/30(0%) | Minus/Minus |
Query 88 ERSPWRKTARA*LIGDRLKINLGIGGSMVP 177 +RSPWR A A* G+ LKI G GG + P Subject 1048 DRSPWRNAASA*FTGEGLKIKRGTGGVLTP 1137
Range 6: 976 to 1065 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 13/30(43%) | 0/30(0%) | Minus/Minus |
Query 13 GSMVPSLRRFAAFGSSLPNESVGC*VVSSH 102 G ++ L FAA S PN+ GC V S+H Subject 976 GGVLTPLTSFAALASFFPNDITGCWVKSAH 1065
Range 7: 1268 to 1498 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 26/77(34%) | 0/77(0%) | Minus/Minus |
Query 311 VIGATRHGAVEVNKVP*WVFNQLVHELAFRHAHHGSSGCEGGGIKISSINSHLNVVNTQFQQNLTNERVPFPDV*HD 541 V GAT H A E+ +V + NQL HEL+ H S ++ +N+ L+ + + QQ L + VP +V HD Subject 1268 VEGATGHAAKELEQVARRMLNQLHHELSLCDVGHNSPRGSPSSVQR*LVNNALH*IESSGQQGLRHVGVPLGNVAHD 1498