This html page seems to have been stripped by Galaxy.
Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.

Nucleotide Sequence (511 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
52
104
156
208
260
312
364
416
468
511

Descriptions

Alignments

Grapevine partitivirus isolate 3138 03 561 RNA dependent RNA polymerase (RdRp) gene, complete cds

Sequence ID: JX658570.1 Length: 1775 Number of Matches: 6

Range 1: 892 to 1395 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
407.0 bits(882) 0.0 165/168(98%) 0/168(0%) Minus/Plus
Query        1  QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG  504
                +GETLYGLDFSSFDTK PAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTT RG
Subject    892  EGETLYGLDFSSFDTKVPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTYRG  1395

Range 2: 892 to 1386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
397.0 bits(860) 0.0 160/165(97%) 0/165(0%) Plus/Minus
Query       10  GCPKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIKCFSL  504
                GCPKQFEFDWVCRLFTFLGL HHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDG+NHLRKPGA*WHTSIFAEHPPIWH*YRSVY+IPHHGVPYVAPL SVTL*DLLSIPVLEVYVLSEYIKRHTDHPSW FRVKRREVQTIKCFSL
Subject    892  GCPKQFEFDWVCRLFTFLGL*HHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGINHLRKPGA*WHTSIFAEHPPIWH*YRSVYKIPHHGVPYVAPLGSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWHFRVKRREVQTIKCFSL  1386

Range 3: 887 to 1390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
388.3 bits(841) 0.0 163/168(97%) 0/168(0%) Plus/Minus
Query        6  GRLSQAV*IRLGLSSFHISRASTPFR*RRRLPGHGRDQTHSRSGKHCHPLTP*DS*FQRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHKVFLPVT  509
                GRLSQAV*IRLGLSSFHISRA TPFR*RRRLPGHGRDQTHSRSGKHCHPLTP*DS*FQRPDTWLGRTLIYNSRR+QPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHKVFLP++
Subject    887  GRLSQAV*IRLGLSSFHISRALTPFR*RRRLPGHGRDQTHSRSGKHCHPLTP*DS*FQRPDTWLGRTLIYNSRRNQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCATWQRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHKVFLPLS  1390

Range 4: 893 to 1387 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
383.2 bits(830) 0.0 161/165(98%) 0/165(0%) Minus/Plus
Query        9  REKHFMVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLSGPGVSLISPVPRKTPTLPEWC*SPRNVKRRQTQSNSNCLGQP  503
                REKHFMVWTSLLLTRK QLG*SVWRLIYSDRT*TSSTGMERRSQSVTL SGATYGTPWCGI *TLRY*CQMGGCSANIEVCHQAPGLRRWL PS*IIY*CPT*PRVRTLKSGISRC*GMTVLSGPGVSLISPVPRKTPTLPEWC*SPRNVKRRQTQSNSNCLGQP
Subject    893  REKHFMVWTSLLLTRKCQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLPSGATYGTPWCGIL*TLRY*CQMGGCSANIEVCHQAPGLRRWLIPS*IIY*CPT*PRVRTLKSGISRC*GMTVLSGPGVSLISPVPRKTPTLPEWC*SPRNVKRRQTQSNSNCLGQP  1387

Range 5: 894 to 1391 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
367.2 bits(795) 0.0 161/166(97%) 0/166(0%) Minus/Plus
Query        5  GRNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSGR*NQESQGVRG*QCFPDRE*V*SRPCPGXXXXXRNGVEAREM*KDDRPSRIQTAWDNLP  502
                GRNTLWSGLLFF*HE ASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC VAQRMGLHGVVF+KHSDINARWADVPQISRCAIRLLVYADG* RRELYISVLPNHVSGR*NQESQGVRG*QCFPDRE*V*SRPCPGRRRRYRNGV+AREM*KDDRPSRIQTAWDNLP
Subject    894  GRNTLWSGLLFF*HESASLDDPCGV*YTQTEHRLRVLEWREGLKA*RCQVAQRMGLHGVVFYKHSDINARWADVPQISRCAIRLLVYADG*FRRELYISVLPNHVSGR*NQESQGVRG*QCFPDRE*V*SRPCPGRRRRYRNGVKAREM*KDDRPSRIQTAWDNLP  1391

Range 6: 894 to 1394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
345.6 bits(748) 0.0 164/167(98%) 0/167(0%) Plus/Minus
Query        2  PREVVPSSLNSTGSVVFSHFSGFNTIPVTXXXXXXXXXXXXLPVRKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP  502
                PR VVPSSLNSTGSVVFSHFSGFNTIPVTSASSWARARSNSLPVRKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVF+KYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAG+FVSKEEKSRP*SVSP
Subject    894  PR*VVPSSLNSTGSVVFSHFSGFNTIPVTSASSWARARSNSLPVRKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFIKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGTFVSKEEKSRP*SVSP  1394

Gremmeniella abietina RNA virus MS1 RNA dependent RNA polymerase gene, complete cds

Sequence ID: KJ786413.1 Length: 1781 Number of Matches: 9

Range 1: 879 to 1382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
332.4 bits(719) 0.0 132/168(79%) 0/168(0%) Minus/Plus
Query        1  QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG  504
                +GETL+GLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD  KWRNVWD MVWYFINTPILMPDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ  E R L+VLGDDSAFR+  EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT RG
Subject    879  EGETLHGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILMPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSAVEFSLEKAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYRG  1382

Range 2: 881 to 1249 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.7 bits(340) 0.0 76/123(62%) 0/123(0%) Plus/Minus
Query      134  RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP  502
                RKALSSP T     S  *H VR  T +*FTTESTI V+ +P+GTPR LRN+RPSGI IGV +KY T+ S TLRH   SR +TFSP   S S+F   ISNATRI Q G+ VSK EKSRP  VSP
Subject    881  RKALSSPRTRNPRASTP*HSVRYSTKM*FTTESTI*VHHDPEGTPRLLRNMRPSGIKIGVLIKYQTIPSQTLRHFWRSRLDTFSPCHVSHSIFWRRISNATRINQEGTLVSKLEKSRPWRVSP  1249

Range 3: 1298 to 1381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/28(75%) 0/28(0%) Plus/Minus
Query        2  PREVVPSSLNSTGSVVFSHFSGFNTIPV  85
                PR VVPSSL S GS VFSHFSG + IPV
Subject   1298  PRYVVPSSLKSEGSSVFSHFSGLSIIPV  1381

Range 4: 891 to 1370 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 55/160(34%) 0/160(0%) Plus/Minus
Query       13  CPKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK  492
                CPKQFE   +      L L++H+  + V L   E +L    ESTV+  +        LT  *V  * +IH+ V+HL  P    H +  A+H  + H*   V ++P+H +P V PL ++T   LLS+P   + +L++ I+ H D P   F V+ R+V+T++
Subject    891  CPKQFEVRGILCFLALLRLEYHTSWLTVRLCFFEAELDR*TESTVVTKNT*STRLDTLTLC*VFD*DVIHN*VDHLSPPRPRRHATSLAKHAAVRH*DWRVDKVPNHTIPNVTPLLAITFRHLLSLPRFPLNILAKNIECHAD*PRRYFGVEARKVKTME  1370

Range 5: 896 to 1201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 37/102(36%) 0/102(0%) Minus/Plus
Query      182  WSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG  487
                WS L    H+   L +P G+ Y+  E+ +  +  REG+  *   VA R+G +G+V ++H+++NA    V Q +  A  ++V +DG L  EL++S +PN VSG
Subject    896  WS*LFELRHQSTFLVNPRGIRYSSPEY*VGNVARREGV*T*SPKVA*RLGWYGLVLYQHANLNA*RPHVSQETWRAFWVVVDSDGRLSCELHLSRIPNRVSG  1201

Range 6: 1315 to 1371 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 8/19(42%) 0/19(0%) Minus/Plus
Query       12  SPRNVKRRQTQSNSNCLGQ  68
                S R+ ++++    SNCLGQ
Subject   1315  SLRSARKQRIPLTSNCLGQ  1371

Range 7: 895 to 1200 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 40/102(39%) 0/102(0%) Minus/Plus
Query      183  MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVR  488
                MV T    T K  LG*S W  I+  R  +   G ERR  +V   SG T+G  W G   T + *C    C A    C    G  RW T  *I  *  T*  VR
Subject    895  MVLTFRASTPKYLLG*SAWHSIFFARILSGKRGKERRCLNVIAKSGVTFGMVWFGTLSTRQS*CLTAACFARDVACLLGRGGLRWSTQL*ITS*SNT*QSVR  1200

Range 8: 1352 to 1378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 7/9(78%) 0/9(0%) Minus/Plus
Query        5  IQTAWDNLP  31
                +QTAWDN+P
Subject   1352  LQTAWDNIP  1378

Range 9: 895 to 1206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 39/104(38%) 0/104(0%) Plus/Minus
Query      177  QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDH  488
                + PDT LG  L  NS+ S+PS  T +  A    C T    AL   C *+T P+ P R AT   H   PSL ++  +  S   Y+ P G +K  L C+  +S DH
Subject    895  RHPDTLLGIRLRCNSQLSRPSESTTTQKARHVSCETCGRQALRLAC**STKPYHPKRYATFGDHV*TPSLLATFPTQYSGEEYRMPRGLTKKVLWCRSSKSQDH  1206

Gremmeniella abietina RNA virus MS1 putative replicase gene, complete cds

Sequence ID: AY089993.1 Length: 1782 Number of Matches: 8

Range 1: 879 to 1382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.0 bits(716) 0.0 132/168(79%) 0/168(0%) Minus/Plus
Query        1  QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG  504
                +GETL+GLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD  KWRNVWD MVWYFINTPILMPDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ  E R L+VLGDDSAFR+  EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT RG
Subject    879  EGETLHGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILMPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSPVEFSLEQAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYRG  1382

Range 2: 881 to 1249 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 78/123(63%) 0/123(0%) Plus/Minus
Query      134  RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP  502
                RKALSSP+T     S  *H VR  T +*FTTESTI V+ +P+GTPR LRN+RPSGI IGV MKY T+ S TLRH   SRF+TFSP   S S+F   ISNATRI Q G+ VSK EKSRP  VSP
Subject    881  RKALSSPSTRNPRASTP*HSVRYSTKM*FTTESTIWVHHDPEGTPRLLRNMRPSGIKIGVLMKYQTIPSQTLRHFWRSRFDTFSPCHVSHSIFWRRISNATRINQEGTLVSKLEKSRPWRVSP  1249

Range 3: 1298 to 1381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/28(75%) 0/28(0%) Plus/Minus
Query        2  PREVVPSSLNSTGSVVFSHFSGFNTIPV  85
                PR VVPSSL S GS VFSHFSG + IPV
Subject   1298  PRYVVPSSLKSEGSSVFSHFSGLSIIPV  1381

Range 4: 891 to 1367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 58/159(36%) 0/159(0%) Plus/Minus
Query       16  PKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK  492
                PKQFE   +      L L++H+  + V L   E +L    ESTV+  H     F  LT   V  * +IH+ V+HL  P    H +  A+H  + H* R V E+P+H +P V PL ++T * LLS+P   + +L++ I+ H D P   F V+ R+V+T++
Subject    891  PKQFEVRGILCFLALLRLEYHTRWLTVRLRLFEAELDR*TESTVVAKHA*PTCFDTLTLCKVFD*DVIHN*VDHLGPPRPRRHATSLAKHAAVRH*DRRVDEVPNHTIPNVTPLLAITF*HLLSLPRFPLNILAKNIECHAD*PRRYFGVEARKVETME  1367

Range 5: 895 to 1248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 47/118(40%) 0/118(0%) Minus/Plus
Query      135  MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLS  488
                MV T    T K  LG*S W  I+  R  +   G ERR Q+V   SG T+G  W G S T   *C    C A    C    G  RW T  *I  *  T   VR  K     C   TVLS
Subject    895  MVSTFRASTPKYLLG*SAWHSIFFARILSGKRGKERRCQNVIAKSGVTFGMVWFGTSSTRLS*CLTAACFARDVACLLGRGGPRWSTQL*ITS*SNTLQSVRVSKHVGYACLATTVLS  1248

Range 6: 1352 to 1378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 6/9(67%) 0/9(0%) Minus/Plus
Query        5  IQTAWDNLP  31
                +QTAWD++P
Subject   1352  LQTAWDDIP  1378

Range 7: 884 to 1201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 39/106(37%) 0/106(0%) Minus/Plus
Query      182  RNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG  499
                R++ WS L    H+   L +P G+ Y+  E+ +  +  REG+K *   VA R+G +G+V H+H+ +NA    V Q +  A  ++V  DG L  EL++S +P  VSG
Subject    884  RDSPWSRLFELRHQSTFLVNPRGIRYSSPEY*VGNVARREGVKT*SPKVA*RLGWYGLVLHQHAYLNA*RPHVSQETWRAFWVVVDPDGRLSCELHLSRIPYRVSG  1201

Range 8: 895 to 1206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 39/104(38%) 0/104(0%) Plus/Minus
Query      177  QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDH  488
                + PDT  G  L  NS+ S+PS  T +  A    C T    AL   C *+T P+ P R AT   H L PSL ++  +  S   Y+ P G +K  L C+  +S DH
Subject    895  RHPDTL*GIRLRCNSQLSRPSGSTTTQKARHVSCETCGRQALR*AC**STKPYHPKRYATFGDHVLTPSLLATFPTQYSGEEYRMPRGLTKKVLWCRSSKSRDH  1206

Gremmeniella abietina RNA virus MS1 RNA 1, complete genome

Sequence ID: NC_004018.1 Length: 1782 Number of Matches: 8

Range 1: 879 to 1382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.0 bits(716) 0.0 132/168(79%) 0/168(0%) Minus/Plus
Query        1  QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG  504
                +GETL+GLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD  KWRNVWD MVWYFINTPILMPDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ  E R L+VLGDDSAFR+  EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT RG
Subject    879  EGETLHGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILMPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSPVEFSLEQAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYRG  1382

Range 2: 881 to 1249 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 78/123(63%) 0/123(0%) Plus/Minus
Query      134  RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP  502
                RKALSSP+T     S  *H VR  T +*FTTESTI V+ +P+GTPR LRN+RPSGI IGV MKY T+ S TLRH   SRF+TFSP   S S+F   ISNATRI Q G+ VSK EKSRP  VSP
Subject    881  RKALSSPSTRNPRASTP*HSVRYSTKM*FTTESTIWVHHDPEGTPRLLRNMRPSGIKIGVLMKYQTIPSQTLRHFWRSRFDTFSPCHVSHSIFWRRISNATRINQEGTLVSKLEKSRPWRVSP  1249

Range 3: 1298 to 1381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 21/28(75%) 0/28(0%) Plus/Minus
Query        2  PREVVPSSLNSTGSVVFSHFSGFNTIPV  85
                PR VVPSSL S GS VFSHFSG + IPV
Subject   1298  PRYVVPSSLKSEGSSVFSHFSGLSIIPV  1381

Range 4: 891 to 1367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 58/159(36%) 0/159(0%) Plus/Minus
Query       16  PKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK  492
                PKQFE   +      L L++H+  + V L   E +L    ESTV+  H     F  LT   V  * +IH+ V+HL  P    H +  A+H  + H* R V E+P+H +P V PL ++T * LLS+P   + +L++ I+ H D P   F V+ R+V+T++
Subject    891  PKQFEVRGILCFLALLRLEYHTRWLTVRLRLFEAELDR*TESTVVAKHA*PTCFDTLTLCKVFD*DVIHN*VDHLGPPRPRRHATSLAKHAAVRH*DRRVDEVPNHTIPNVTPLLAITF*HLLSLPRFPLNILAKNIECHAD*PRRYFGVEARKVETME  1367

Range 5: 895 to 1248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 47/118(40%) 0/118(0%) Minus/Plus
Query      135  MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLS  488
                MV T    T K  LG*S W  I+  R  +   G ERR Q+V   SG T+G  W G S T   *C    C A    C    G  RW T  *I  *  T   VR  K     C   TVLS
Subject    895  MVSTFRASTPKYLLG*SAWHSIFFARILSGKRGKERRCQNVIAKSGVTFGMVWFGTSSTRLS*CLTAACFARDVACLLGRGGPRWSTQL*ITS*SNTLQSVRVSKHVGYACLATTVLS  1248

Range 6: 1352 to 1378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 6/9(67%) 0/9(0%) Minus/Plus
Query        5  IQTAWDNLP  31
                +QTAWD++P
Subject   1352  LQTAWDDIP  1378

Range 7: 884 to 1201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 39/106(37%) 0/106(0%) Minus/Plus
Query      182  RNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG  499
                R++ WS L    H+   L +P G+ Y+  E+ +  +  REG+K *   VA R+G +G+V H+H+ +NA    V Q +  A  ++V  DG L  EL++S +P  VSG
Subject    884  RDSPWSRLFELRHQSTFLVNPRGIRYSSPEY*VGNVARREGVKT*SPKVA*RLGWYGLVLHQHAYLNA*RPHVSQETWRAFWVVVDPDGRLSCELHLSRIPYRVSG  1201

Range 8: 895 to 1206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 39/104(38%) 0/104(0%) Plus/Minus
Query      177  QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDH  488
                + PDT  G  L  NS+ S+PS  T +  A    C T    AL   C *+T P+ P R AT   H L PSL ++  +  S   Y+ P G +K  L C+  +S DH
Subject    895  RHPDTL*GIRLRCNSQLSRPSGSTTTQKARHVSCETCGRQALR*AC**STKPYHPKRYATFGDHVLTPSLLATFPTQYSGEEYRMPRGLTKKVLWCRSSKSRDH  1206

Gremmeniella abietina RNA virus MS2 unnamed segment, complete sequence

Sequence ID: AY615211.1 Length: 1781 Number of Matches: 7

Range 1: 879 to 1379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
327.3 bits(708) 0.0 131/167(78%) 0/167(0%) Minus/Plus
Query        4  QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSR  504
                +GETLYGLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD  KWRNVWD MVWYFINTPIL PDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ  E R L+VLGDDSAFR+  EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT R
Subject    879  EGETLYGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILNPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSPVEFSLEQAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYR  1379

Range 2: 881 to 1249 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 77/123(63%) 0/123(0%) Plus/Minus
Query      134  RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP  502
                RKALSSP+T     S  *H VR  T +*FTTESTI V+ +P+GTPR LRN+RPSG  IGV MKY T+ S TLRH   SR +TFSP   S S+F   ISNATRI Q G+ VSK EKSRP* VSP
Subject    881  RKALSSPSTRNPRASTP*HSVRYSTKM*FTTESTIWVHHDPEGTPRLLRNMRPSGFKIGVLMKYQTIPSQTLRHFWRSRLDTFSPCHVSHSIF*RRISNATRINQEGTLVSKLEKSRP*RVSP  1249

Range 3: 1298 to 1378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 19/27(70%) 0/27(0%) Plus/Minus
Query        5  REVVPSSLNSTGSVVFSHFSGFNTIPV  85
                R VVPS+L S GS VFSHFSG + IPV
Subject   1298  RYVVPSNLKSEGSSVFSHFSGLSIIPV  1378

Range 4: 891 to 1364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 56/158(35%) 0/158(0%) Plus/Minus
Query       19  KQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK  492
                KQFE   +      L L++H+  + V L   E +L    ESTV+  H     F  LT   V  * +IH+ V+HL  P    H +  A+H  +  * R V E+P+H +P V PL ++T   LLS+P   + +L++ IK H D P     V+ R+V+TI+
Subject    891  KQFEVRGILCFLALLRLEYHTRWLTVRLCLFEAELDR*TESTVVAKHA*STCFDTLTLCKVFD*DVIHN*VDHLGPPRPRRHATSLAKHAAVRI*DRRVDEVPNHTIPNVTPLLAITFRHLLSLPRFPLNILTKNIKCHAD*PRRYLGVEARKVETIE  1364

Range 5: 884 to 1201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 38/106(36%) 0/106(0%) Minus/Plus
Query      182  RNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG  499
                R++LWS L    H+   L +P G+*Y+ +E+ +  +  REG+  *   VA R+G +G+V H+H+ + +    V Q +  A  ++V  DG L  EL++S +P  VSG
Subject    884  RDSLWSRLFELRHQGTFLVNPRGI*YSSSEY*VGNVARREGV*T*SPKVA*RLGWYGLVLHQHAYLKS*RPHVSQETWRAFWVVVDPDGRLSCELHLSRIPYRVSG  1201

Range 6: 895 to 1248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 45/118(38%) 0/118(0%) Minus/Plus
Query      135  MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLS  488
                MV T    T +  LG*S W LI+  R  +   G ERR  +V   SG T+G  W G S T   *     C A    C    G  RW T  *I  *  T   VR  K     C   TVLS
Subject    895  MVSTFRASTPRYLLG*SAWHLIFFVRILSGKRGKERRCLNVIAKSGVTFGMVWFGTSSTRLS*ILTAACFARDVACLLGRGGPRWSTQL*ITS*SNTLQSVRVSKHVDYACLATTVLS  1248

Range 7: 892 to 1206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 37/105(35%) 0/105(0%) Plus/Minus
Query      177  QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHK  491
                + PDT  G  L  NS+ S+PS  T +  A    C T     L   C *+T P+ P R AT   H   PSL ++  +  S   YQ P G +K    C+  +S DH+
Subject    892  RHPDTL*GIRLRCNSQLSRPSGSTTTQKARHVSCETCGRQDLR*AC**STKPYHPKRYATFGDHV*TPSLLATFPTQYSDEEYQMPRGLTKKVPWCRSSKSRDHR  1206