Queries
Nucleotide Sequence (619 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
205.9 | 305.2 | 30% | 2.804e-52 | 42% | NC_018458 | |
369.5 | 900.7 | 26% | 1.604e-101 | 33% | NC_003604 | |
189.4 | 268.0 | 38% | 2.591e-47 | 41% | NC_016404 | |
73.5 | 171.8 | 22% | 9.921e-31 | 48% | NC_003602 | |
62.5 | 130.1 | 15% | 1.617e-18 | 44% | NC_011062 |
Alignments
Range 1: 2755 to 3291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 85/179(47%) | 0/179(0%) | Plus/Plus |
Query 82 YVDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK 618 Y ++ A++L++S + G TG+LL K+ +GK ++ + I+ ++ FGFAGSGKS++ QT+L+ + LVISPRK L DW KI R KVVTFE A +++ IV+DE+GL PPGY+DL+ + PSTL+LLGDPLQ +Y++K D + L ++F+R++G+LPYL YSHRL K Subject 2755 YPNREYAEKLSESMFEGHTGILLNKFKRGKSVIKDVRKEIKFVSFFGFAGSGKSYYPQTVLQHTFGIRALVISPRKALAADWSSKIGSRAKVVTFEKAVVEEEVFSCIVVDELGLYPPGYLDLICLLHEPSTLVLLGDPLQGTYYNKDDRIKLATVSHNVFARLEGSLPYLMYSHRLSK 3291
Range 2: 2802 to 3077 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 39/92(42%) | 0/92(0%) | Minus/Minus |
Query 129 MALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP 404 M L+ SS A SNVTT IF QS+ + FLGL+T+ + S V* *L PDPAKPK++ I S + PLL PV P Subject 2802 MQLNTSSSTTAFSNVTTFARDPIFELQSAANAFLGLITSARMPNVCWSTV*G**LLPDPAKPKKLTNFISFLTSLITLLPLLNLFSRIPV*P 3077
Range 1: 2730 to 3263 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
369.5 bits(800) | 0.0 | 146/178(82%) | 0/178(0%) | Plus/Plus |
Query 85 VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLPK 618 VDK KADRLAQSFY+G TGVLLGKYNKGKMH+ E+EEP EVLT+FGFAGSGKSHWCQTIL+ C VEK LVISPRKVL+DDWV KISK+H+VVTFEVAFMDD+GCK IVIDEIGLLPPGY+DLVI+ +P TL+LLGDPLQS+YHSKRDNV+LEASQED+F+RV+G LPYLCYSHRLP+ Subject 2730 VDKAKADRLAQSFYNGNTGVLLGKYNKGKMHTGEIEEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLRDDWVAKISKKHRVVTFEVAFMDDYGCKDIVIDEIGLLPPGYIDLVIAAHQPRTLVLLGDPLQSTYHSKRDNVVLEASQEDVFNRVRGKLPYLCYSHRLPR 3263
Range 2: 2774 to 3259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 107/162(66%) | 0/162(0%) | Minus/Minus |
Query 129 GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTKXXXXXXXXXXXXXTMALHPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSIGSSNSAECIFPLLYFPRSTPVHP 614 GNLCE* + GS P T K SS LASR TLSRLL L*RGSP +RV G +T+S PGG PISSIT++L P SSM ATS VTTLC L+IF TQSSLSTFLGL+T+ FST Q SMV HQ*LFPDPA PK V TS GSS S CI PLLY P TPV P Subject 2774 GNLCE*HKYGSFPLTRLKTSS*LASRTTLSRLLW*VL*RGSPRSTRVRG*CAAITRSMYPGGRRPISSITISLQP*SSMNATSKVTTLCFLDIFATQSSLSTFLGLITSTFSTEQCLSMVWHQ*LFPDPANPKAVRTSFGSSISPVCILPLLYLPSRTPVFP 3259
Range 3: 2730 to 3062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 40/111(36%) | 0/111(0%) | Minus/Minus |
Query 85 LIYNYGFTPEIIHESDLECNHLVPLRDLPHPIILEHLSRTND*CFLNFTTPEYGLTPVTFSGPGETKRGQYLDRFLQFSRMHLSLVVFPKKYTCASTVEALREPICLDLVH 417 L+Y+ F ++HE LE H + L +PII EH N FL+ T +YGL PVTF ++K L L +RMHL+ +V ++ S VE L + + L VH Subject 2730 LVYHDIFAAVVVHECHLESYHSMLLGYFCYPIISEHFPWANHKHFLHGTVFKYGLAPVTFP*SCKSKGR*NLFWLLYLARMHLAFIVLAEQNPRVSIVETLSQTVGLGFVH 3062
Range 4: 3084 to 3257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 25/58(43%) | 0/58(0%) | Minus/Minus |
Query 439 *PV*VAEVGKCALHPREDVLLAGL*DHIIPFAMI*TLKGIAQ*KQSTWAEDRDDQVYI 612 *P+*VA V HP ED+LL L DHI+ F ++ LK I+Q Q W +VY+ Subject 3084 *PM*VA*VW*FPSHPIEDILLTSLQDHIVTFTVVGALKRISQEHQGAWLMCGYHKVYV 3257
Range 5: 2732 to 3073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 44/114(39%) | 0/114(0%) | Plus/Plus |
Query 87 GQDQGR*ARAELLQWMHRCTSWEIQQGKDAFC*IGGTDRGIDLFWFRRVRKKSLVSNHTPEL*S*ENISH*S*KGAQG*LGGEDL*EAQGGYIRGRFHG*FRV*SHSYR*DRTT 428 GQ QGR + ++ LQW H ++ ++Q +DA+ G RG + W R+R+KSLV NHT L E+ * + AQ *LG +++ EA G RG HG R+ + R DR++ Subject 2732 GQSQGRPSGSKFLQWKHGGSARQVQ*RQDAYGRDRGAKRGSNGLWICRIREKSLVPNHT*TLFRGESACD*PKESAQR*LGSKNIQEA*SGNFRGGIHGRLRLQRYRDRRDRSS 3073
Range 6: 3133 to 3258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 19/42(45%) | 0/42(0%) | Plus/Plus |
Query 488 WAIPFRVHIIANGIM*S*RPAKRTSSLG*RAHFPTSATHTGY 613 W I F+ N M S R KR SS+G* ++ T ATH GY Subject 3133 WEILFKAPTTVNVTMWSWRLVKRMSSIG*EGNYHTYATHIGY 3258
Range 7: 2704 to 3045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 38/114(33%) | 0/114(0%) | Plus/Plus |
Query 59 TRSGRRVTTWTRSRQIGSRRASTVDAQVYFLGNTTRERCILLNWRNRSRY*PLLVSPGPEKVTGVKPYSGVVKLRKH*SLVLERCSRMIGWGRSLRGTRWLHSRSLSWMISGVK 400 T S ++ WT+ R + ST++ + + +T + RCI R++ R+* L KVTG KPY V RK L +CS MIG + R W SR SW + K Subject 2704 TASESGISGWTKPRPTVWLKVSTMETRGFCSASTIKARCIRAR*RSQKRF*RPLDLQDQGKVTGAKPYLNTVPWRKCL*LAQGKCSEMIG*QKYPRSIEW*LSRWHSWTTTAAK 3045
Range 1: 2699 to 3229 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 88/177(50%) | 0/177(0%) | Plus/Plus |
Query 85 VDKIKADRLAQSFYSGCTGVLLGKYNKGKMHSAELEEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVILEASQEDIFSRVKGALPYLCYSHRLP 615 V + +A L +SF G TGV L KY K + + I+V FGFAGSGKS++ QT+LR C ++ TLVI PRK LK DW K+ V TFE AF G + I+IDE+GLLPPGY+DLV + F+ T+LLLGDPLQS Y++K D++ LE E +F R+ G YL +HRLP Subject 2699 VTQSRAIHLLESFREGFTGVNLNKYQKRPLGTDIDNTLIDVYGLFGFAGSGKSYYPQTLLRCCNMKDTLVIVPRKALKADWSEKVKDGAIVRTFESAFNGRKGYENIIIDEVGLLPPGYIDLVHANFQYDTMLLLGDPLQSEYYNKGDSLFLEPISESVFDRLMGKKNYLYKTHRLP 3229
Range 2: 2812 to 3009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/66(42%) | 0/66(0%) | Minus/Minus |
Query 198 HPKSSMKATSNVTTLCLLEIFPTQSSLSTFLGLMTNVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSI 395 +P +KA S V T+ F QS+ S F G MT+V Q V *LFP PA PK TSI Subject 2812 YPFLPLKALSKVLTMAPSFTFSLQSAFSAFRGTMTSVSFILQHLRRVCG**LFPLPANPKRPYTSI 3009
Range 3: 3061 to 3228 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 23/56(41%) | 0/56(0%) | Minus/Minus |
Query 447 GNLCE*QR*GSAPFTLEKMSSWLASRITLSRLL*YEL*RGSPSRSRVLGRKTEMTK 614 GNLC R* P + S + S+ LS LL*Y L GSP+ S V K T+ Subject 3061 GNLCVL*R*FFFPISRSNTLSLIGSKNKLSPLL*YSLCSGSPNNSIVSYWKLACTR 3228
Range 1: 2995 to 3144 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 31/50(62%) | 0/50(0%) | Plus/Plus |
Query 391 GCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRDNVIL 540 G IVIDEIGLLPPGY+D+V F +LL+LGDPLQ YHSK D+ L Subject 2995 GYGLIVIDEIGLLPPGYIDMVHGYFCYDSLLVLGDPLQCEYHSKADHFFL 3144
Range 2: 2791 to 2979 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 31/63(49%) | 0/63(0%) | Plus/Plus |
Query 190 EEPIEVLTSFGFAGSGKSHWCQTILRSCEVEKTLVISPRKVLKDDWVGKISKRHKVVTFEVAF 378 +E I+V + GFAGSGKS + Q +L++ +LVI PRK L DW K+ KVVTFE AF Subject 2791 KELIDVHLTLGFAGSGKSFYPQCVLKNSHYANSLVIVPRKALCSDWSNKVHPDVKVVTFESAF 2979
Range 1: 2604 to 2780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 26/59(44%) | 0/59(0%) | Plus/Plus |
Query 352 KVVTFEVAFMDDFGCKAIVIDEIGLLPPGYVDLVISVFRPSTLLLLGDPLQSSYHSKRD 528 KV+TFE IVIDE+ L+P GY+D++I++ +T + L DPLQ+ YH+K D Subject 2604 KVMTFEAGLRRVQKSSLIVIDELSLMPNGYLDMLINMNEEATFITLFDPLQARYHAKSD 2780
Nucleotide Sequence (465 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
327.8 | 748.1 | 24% | 3.861e-89 | 36% | NC_003604 | |
215.1 | 293.1 | 28% | 3.301e-55 | 42% | NC_016404 | |
230.2 | 395.0 | 23% | 9.263e-60 | 32% | NC_003602 | |
227.0 | 333.4 | 31% | 8.557e-59 | 46% | NC_018458 | |
109.7 | 309.1 | 47% | 2.68e-36 | 34% | NC_011106 |
Alignments
Range 1: 567 to 1025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.8 bits(709) | 0.0 | 126/153(82%) | 0/153(0%) | Plus/Plus |
Query 5 ECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 EC+FIHDEVQYWSLDEMQRFLGSL +RVVYSI+YP+EV+AG+ QSLFPEAYTFDLK+ RL WYPDGKAEGAYTQPVNPWLL CSKT DS+ RSWTITKLQTIGAHH+FSA+ GS+LTE++YKYDNFTIINPND+L+G+RG KPLYLRARMI Subject 567 ECIFIHDEVQYWSLDEMQRFLGSLSKVDRVVYSIIYPSEVEAGYSQSLFPEAYTFDLKDRRLVWYPDGKAEGAYTQPVNPWLLRCSKTEDSKGRSWTITKLQTIGAHHLFSAIKGSYLTEESYKYDNFTIINPNDVLKGKRGGKPLYLRARMI 1025
Range 2: 566 to 1024 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.9 bits(406) | 0.0 | 95/153(62%) | 0/153(0%) | Minus/Minus |
Query 4 IILARKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHS 462 I+ AR+ SG PL P S G M+VKLSYL SSV+ LP ALK * AP+V SFV+V ES+V H S+ GFTGCV*APSA PSGYH NL S +SKV ASGNRL PASTS GY ILYTT P+NLCISS+LQY*TSS +N HS Subject 566 IMRARR*SGFPPLFPFRTSLGFMIVKLSYLYDSSVK*LPFIALKR**APMVWSFVIVHDRPFESSVFEHLSSQGFTGCV*APSAFPSGYHTNLLSLRSKVYASGNRLCEYPASTSDGYMILYTTLSTLERLPKNLCISSRLQY*TSSCMNMHS 1024
Range 3: 564 to 1025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 58/154(38%) | 0/154(0%) | Minus/Minus |
Query 2 DHPSS*VQRLTPPSTPEYIVWVNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRVGSLGFTIGVPC*PSFL*IKGIGLRE*ALTEPCIYLSRVHNTVHDSVCVLERS*ESLHFVQAPVLNLVVNKHAFT 463 DH *++ + + IV V D EV+VLV L Q A ++VM L+LC+ P S L + EQP +H LR+GS + VP * +K + L +*AL + L V++T+H S+ E +*E LH V PVLNL++ ++AFT Subject 564 DHAGP*IEWFPASLSLQNIVRVYDREVIVLVRFLRQVAALYCTKEVMSSDGLELCDRP*SPLRILRF*ASEQPRVHRLRIGSFSLPVRVPY*SPVFEVKSVRLWK*AL*ISSLDL*WVYDTIHYSIDFGETT*EPLHLV*TPVLNLIMYEYAFT 1025
Range 4: 566 to 982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 50/139(36%) | 0/139(0%) | Plus/Plus |
Query 4 *MRVYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHLQRRSG*LPDRGYLQVRQLHHH*PKRYTQG 420 *M +++ GSILE R+AK+ R + + S V Y +P GR + +KPI G++ * + ++++MVP SL+A E + A++ + G +D +KA ++R +S L G L D G +QVR LH H P R ++G Subject 566 *MHIHT**GSILESRRDAKVLR*SLQSR*SSV*YHIPIRGRGWIFTKPISRGVHF*PQRQEISMVPGREG*RSLYAACEPLAAQMLKNGGFEGAIMDDHKAPNHRSSSPL*CNKGQLLDGGIVQVR*LHDHKP*RCSEG 982
Range 5: 565 to 894 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 40/110(36%) | 0/110(0%) | Plus/Plus |
Query 3 VNACLFTTRFNTGAWTKCKDS*DRSSTQTESCTVLCTRLR*MQGSVKAYSRRPIPLI*RKEG*HGTPMVKPREPTRNQ*IHGCSGVVRPWTQSPEAGPLQSCRQ*GRITS 332 VNA + RFNTG T+CK S* S E C V T R KAY +R L + *+GT + +EP R+ * GCS + + + G QS + ITS Subject 565 VNAYSYMMRFNTGV*TRCKGS*VVSPKSIE*CIVSYTHQRSRLDIHKAYFQRRTLLTSKTGD*YGTRTGRLKEPIRSL*TLGCSDAQKRRIRRGDHGRSQSSKPSELITS 894
Range 1: 551 to 1012 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.1 bits(463) | 0.0 | 80/154(52%) | 0/154(0%) | Plus/Plus |
Query 2 CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 CE IHDEVQYWSL + Q LG + R++YSI+YPAE+D G+ SLFPEAY F+ + G W PDG+++GAY QP+NPWLL SKT+DS R+WTI K+ + +HH+F A LGS +TED Y YD++T+I + GRR +YLR+R + Subject 551 CETAVIHDEVQYWSLQDFQLVLGQMNKVKRLMYSIIYPAEIDQGYEHSLFPEAYHFERRGGYFIWLPDGQSDGAYKQPINPWLLSTSKTIDSRGRTWTIGKVTSFASHHLFVASLGSTITEDEYTYDDYTVIPRGALSSGRRDYSGMYLRSRYV 1012
Range 2: 550 to 945 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 55/132(42%) | 0/132(0%) | Minus/Minus |
Query 1 MMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHSQ 396 M V SY+ SSV LPR A + +F MV + ES V S+HG GC+ APS PSG + P SK *ASGN P S SAG I Y +RF P S + QY TSS I SQ Subject 550 MTV*SSYVYSSSVMVLPRLATNRWWEAKLVTFPMVHVRPLESIVFEVLSSHGLIGCLYAPSDWPSGNQMKYPPRLSKW*ASGNNECS*PWSISAG*MIEYMSRFTLFICPSTSWKSCRDQYCTSSCITAVSQ 945
Range 1: 535 to 984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 91/150(61%) | 0/150(0%) | Plus/Plus |
Query 14 FIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGRRGCKPLYLRARMI 463 FIHDEV YWSL + Q FLG L R++YS++YPAE+ GF QSLFPEAY FDL +TWYPDGKA+G+Y QPVNPWLL SKTVD ++WT+TK+ T+GAHH+F A GS LTE+ Y YD+FT+I P +L+GRR K YLR+R I Subject 535 FIHDEVHYWSLKDFQSFLGHLGGTQRLLYSVIYPAELHIGFEQSLFPEAYEFDLLGEYITWYPDGKADGSYKQPVNPWLLTTSKTVDVHGQTWTLTKVLTMGAHHLFLATRGSTLTEEEYHYDDFTVILPKKLLQGRRRNKMPYLRSRFI 984
Range 2: 543 to 971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 73/143(51%) | 0/143(0%) | Minus/Minus |
Query 22 RKYSGLHPLLPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS 450 RKY L L P FG M VK S SSV LPR A K *CAP+V +FV VQ+ STVL S+ GFTGC+* PSA PSGY V KS *ASGNRL P +SAG LY R PR L S +LQ TSS Subject 543 RKYGILFLLRPCRSFFGRMTVKSS**YSSSVSVLPRVAKKR*CAPMVSTFVSVQVWPCTSTVLEVVSSQGFTGCL*EPSAFPSGYQVMYSPSKSNS*ASGNRLCSKPMCSSAG*ITLYNKR*VPPRWPRKLWKSLRLQ*CTSS 971
Range 3: 534 to 854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 34/107(32%) | 0/107(0%) | Plus/Plus |
Query 13 VYSRRGSILELGRNAKIPRIAQARKPSRVQYCVPG*GRCRVRSKPIPGGLYL*FKGRKVNMVPRW*SRGSLHATSESMVARV**DRGLRVQKLDHYKAADNRGASHL 333 +Y+ RG++LE K PR VQ +P R ++P+PG L +*F R ++VP S L ATS+S+ *+ G LD +++A++ S L Subject 534 LYT*RGALLEPQGFPKFPRPPGRNSTLIVQCDLPSRATHRF*TEPVPGSL*I*FARRVHHLVP*RES*RFLQATSKSLATNNL*NCGCARPNLDTHESANHGCTSSL 854
Range 1: 565 to 987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.0 bits(489) | 0.0 | 86/141(61%) | 0/141(0%) | Plus/Plus |
Query 2 CECVFIHDEVQYWSLDEMQRFLGSLKHANRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINPNDILRGR 424 C+ V IHDEVQYWSL ++Q FLG+++ V+YS+VYPAE+ G SLFPEAY F++ +G WYPDGKAEGAY QP+NPWLL SKT D R+WTITKLQT+GAHH+FS GS +TED+Y YD FT+INP + GR Subject 565 CDTVVIHDEVQYWSLADLQNFLGNVEDNTNVLYSVVYPAEITTGITFSLFPEAYEFEVHDGYFIWYPDGKAEGAYKQPINPWLLTTSKTEDVRYRTWTITKLQTVGAHHLFSCTPGSTITEDSYTYDQFTLINPYNCFAGR 987
Range 2: 567 to 986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 64/140(46%) | 0/140(0%) | Minus/Minus |
Query 4 LPLSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNLPSFKSKV*ASGNRL*PNPASTSAGYTILYTTRFACLSDPRNLCISSKLQY*TSS*INTHS 423 LP G + V S +*+SSV P *CAP VCS V+VQ+L S+VL S+HG GC+ APSA PSGY + PS+ S *ASGN P SAG T Y T + P+ C S+ QY*TSS I T S Subject 567 LPAKQL*GFIKVNWS*V*LSSVMVEPGVHENR*CAPTVCSLVIVQVLYLTSSVLDVVSSHGLIGCLYAPSAFPSGYQMK*PSWTSNS*ASGNSENVIPVVISAG*TTEYNTFVLSSTLPKKFCRSASDQY*TSSCITTVS 986
Range 1: 721 to 933 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 37/71(52%) | 0/71(0%) | Plus/Plus |
Query 191 TWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTIGAHHIFSAVLGSFLTEDTYKYDNFTIINP 403 TW PDGK G+Y QPVNPWLL +KT+D + R+WT+TKL+++G+HH+F G +TED Y++FT+++P Subject 721 TWMPDGKCCGSYKQPVNPWLLSTNKTMDLKGRTWTLTKLESVGSHHLFLCTPGDLVTEDEAVYNDFTLVDP 933
Range 2: 616 to 720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 15/35(43%) | 0/35(0%) | Plus/Plus |
Query 92 VVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTW 196 ++Y+++YPAE+ AG+ SL+PE Y F + E T+ Subject 616 LIYTVIYPAELHAGYPFSLYPELYDFRVSEDGKTF 720
Range 3: 541 to 597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 13/19(68%) | 0/19(0%) | Plus/Plus |
Query 11 VFIHDEVQYWSLDEMQRFL 67 V IHDEV YW+L + QRFL Subject 541 VIIHDEVHYWNLKDFQRFL 597
Range 4: 714 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 37/78(47%) | 0/78(0%) | Minus/Minus |
Query 184 LSISFGLMMVKLSYL*VSSVRKLPRTALKM*CAPIVCSFVMVQLLDSESTVLLHPSNHGFTGCV*APSALPSGYHVNL 417 L SFG VK Y SSV + P K *C P + SFV VQ+L S VL +NHGFTGC+* P PSG V + Subject 714 LEKSFGSTSVKSLYTASSSVTRSPGVHKKR*CDPTLSSFVRVQVLPLRSMVLFVLNNHGFTGCL*EPQHFPSGIQVKV 947
Range 5: 754 to 930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 20/59(34%) | 0/59(0%) | Minus/Minus |
Query 224 VNDGEVVVLVGILGQEATQNGAEDVMRPYCLQLCNGPASGL*VHGLTTPEQPWIHWLRV 400 V+ E+++ +L E + ++VM P LC GP+ L +HGL + PWIH L + Subject 754 VHQCEIIIHSLVLSDEIPRRAQKEVM*PNTF*LC*GPSPSLKIHGLVCAQ*PWIHRLLI 930
Nucleotide Sequence (342 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
147.2 | 499.6 | 22% | 5.336e-35 | 44% | NC_018458 | |
160.1 | 545.3 | 22% | 7.329e-39 | 47% | NC_003604 | |
144.5 | 456.4 | 20% | 3.588e-34 | 41% | NC_016404 | |
143.1 | 283.6 | 20% | 9.303e-34 | 39% | NC_003602 | |
128.9 | 435.7 | 20% | 1.783e-29 | 46% | NC_011106 |
Alignments
Range 1: 4576 to 4815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 59/80(74%) | 0/80(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHSASKHTL 331 AFDRSQDEKILD+EVEVL FFLWPEE+I+EY LKL M ++G+LAIMRFSGEFGTFFFNT+ NMVF+CMRY+ K L Subject 4576 AFDRSQDEKILDLEVEVLKFFLWPEELIREYVELKLQMSCSMGNLAIMRFSGEFGTFFFNTMCNMVFTCMRYNVTDKTRL 4815
Range 2: 4579 to 4815 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 37/79(47%) | 0/79(0%) | Minus/Minus |
Query 95 *SVFGCRVVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK 331 *S F C V+PHT EHHVA VEE+ +F R+ H Q+ + AH + + V + LRP EE EHF+L ++YLL+L S++ Subject 4579 *SGFICDVIPHTCEHHVAHCVEEKRPKFPRKSHDCQVPHTAAHLEFQLHVLSNQLLRP*EEFEHFHLQVQYLLVLRSIE 4815
Range 3: 4629 to 4805 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 34/59(58%) | 0/59(0%) | Minus/Minus |
Query 145 LDAEWYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKL 321 L YLI +NTML VLKK VPNSPENL++AK P I + + +YSLI SSG RK L Subject 4629 LSVTLYLIHVNTMLHIVLKKNVPNSPENLMIAKFPILQLIWSFNSTYSLISSSGHRKNL 4805
Range 4: 4587 to 4790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 30/68(44%) | 0/68(0%) | Plus/Plus |
Query 103 ITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEV 306 I+G ED GG SAQ LP+A G D +R + + G G++E+ W I ++ LQH QHGV +YEV Subject 4587 ISGREDIGPGGGSAQILPMAGGAD*RVRGVETPNELQYGELGNHEIFWGIWDVFLQHNVQHGVHMYEV 4790
Range 5: 4574 to 4789 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 33/72(46%) | 0/72(0%) | Minus/Minus |
Query 90 TSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 305 TSY *TPCC+ C*R+ +I Q+ S P+ P R *S P A GR *AL PP +SS P I + P Subject 4574 TSYM*TPCCTLC*RKTSQIPQKIS*LPSSPYCSSFGVSTPRTL*SAPPAIGRI*ALPPPGPISSRPEIYRXP 4789
Range 1: 4518 to 4736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 62/73(85%) | 0/73(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYH 310 AFDRSQDEK+LD+EVEVL FFLWPE++I+EYE LKLMMG ALGDLA+MRFSGEFGTFFFNT+ NMVFSCMRYH Subject 4518 AFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCALGDLAVMRFSGEFGTFFFNTVCNMVFSCMRYH 4736
Range 2: 4517 to 4735 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 56/73(77%) | 0/73(0%) | Minus/Minus |
Query 91 WYLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA 309 W IQLNTML VLKKKVPNSPENLI A+SP A PII+LS SYSLI SSG RKK TSTS SS FSSCDLS A Subject 4517 W*RIQLNTMLHTVLKKKVPNSPENLITARSPNAHPIISLSSSYSLIKSSGHRKKRKTSTSKSSTFSSCDLSNA 4735
Range 3: 4521 to 4736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 36/72(50%) | 0/72(0%) | Minus/Minus |
Query 95 VVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK 310 VV HT +HHVA GVEEEG+EF EPH+ Q+ T+HHQL+ LV D P +E + +L +++ L+L*SV+ Subject 4521 VVTHTTKHHVAHGVEEEGAEFPGEPHHRQVA*CTSHHQLKLLVLPD*IFGP*KEAQDLHLQVQHFLVL*SVE 4736
Range 4: 4525 to 4737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 37/71(52%) | 0/71(0%) | Plus/Plus |
Query 99 TDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV*GTT 311 TDH+ R+ WR + S +G + *S +TR S**W V W **GS NS PSSSTP ATWC V TT Subject 4525 TDHKTRKCWTWRWRSCASFYGPKI*SGSTRSLS**WDVH*ATWR**GSPGNSAPSSSTPCATWCLVVCVTT 4737
Range 5: 4516 to 4734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 35/73(48%) | 0/73(0%) | Minus/Minus |
Query 90 GTSYS*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 308 G +Y+*TPCC+ C*RRR RI +RTS P H PSS * R P* +A R+ PP S VIC+ P Subject 4516 GNAYN*TPCCTRC*RRRCRIPRRTSSPPGRLMHIPSSA*APRTP*LNLRAIERSARPPPPSPALSRLVICRMP 4734
Range 6: 4517 to 4735 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 34/73(47%) | 0/73(0%) | Plus/Plus |
Query 91 GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQLYEVP 309 G+ QIT E GG L +A +QG+R DDG C G +EVL IR+LLLQH QHGV LY +P Subject 4517 GIRQITRRESAGLGGGGLALLSMARRFNQGVRGA*ADDGMCIRRPGGDEVLRGIRHLLLQHRVQHGV*LYALP 4735
Range 1: 4487 to 4702 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 55/72(76%) | 0/72(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRY 307 AFDRSQDE+ILD E+EVL FFLWPEE+I EY+ LKLMMGS++G LA+MRFSGEFGTFFFNT+ NM F+C+RY Subject 4487 AFDRSQDERILDFEMEVLKFFLWPEEVINEYKELKLMMGSSMGSLAVMRFSGEFGTFFFNTICNMAFTCLRY 4702
Range 2: 4490 to 4705 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 34/72(47%) | 0/72(0%) | Minus/Minus |
Query 95 VVPHTAEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK 310 +V T E HV GV+EEGSEF RE H+ + HHQ E VF++H L P+EE+ HF+ I+ +L* VK Subject 4490 LVTQTREGHVTDGVKEEGSEFARESHHS**SHGATHHQFELFVFINHLLWPQEEL*HFHFEIQDPFVL*PVK 4705
Range 3: 4486 to 4689 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 45/68(66%) | 0/68(0%) | Minus/Minus |
Query 91 LNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA 294 + ML VLKKKVPNSPENLI A P LPIINLS YSLI SSG +K +TS S S I SSCDLS A Subject 4486 VKAMLQMVLKKKVPNSPENLITASDPMELPIINLSSLYSLITSSGHKKNFNTSISKSRILSSCDLSNA 4689
Range 4: 4491 to 4694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 34/68(50%) | 0/68(0%) | Plus/Plus |
Query 96 LTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV 299 LT HR + I + KC SS G R+* NT+ S+**W W ** S NSEPSS TP TW S V Subject 4491 LTGHRTKGSWISKWKC*SSSCGQRR*LMNTKSSN**WVAPWDH*L**DSRANSEPSSLTPSVTWPSRV 4694
Range 5: 4486 to 4692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 28/69(41%) | 0/69(0%) | Plus/Plus |
Query 91 GL*QITG*EDT*YGG*SAQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGVQL 297 G+*Q+TG +D + S + L +A G D I+ Q+DDG G +E+L IRNLLL H HG+ + Subject 4486 GV*QVTGRKDPGFRNGSVKVLLVARGGD**IQRAQIDDG*LHGITSCDEILGRIRNLLL*HHL*HGLHV 4692
Range 6: 4485 to 4691 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 31/69(45%) | 0/69(0%) | Minus/Minus |
Query 90 S*TPCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQRP 296 +* PC C*RRRFRI R S P PSS * I *S P A R L S PV CQ P Subject 4485 T*RPCYRWC*RRRFRIRPRISSQLVIPWSYPSSI*ALCIH*SPPLATRRTLTLPFRNPGSFRPVTCQTP 4691
Range 1: 4465 to 4680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 55/72(76%) | 0/72(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRY 307 AFDRSQDEK+LD EV VL FFLWPEEMI+EY TLKLMMG ++G LA+MRFSGEFGTFFFNT+ NM F+C++Y Subject 4465 AFDRSQDEKVLDFEVNVLKFFLWPEEMIEEYVTLKLMMGCSMGSLAVMRFSGEFGTFFFNTICNMGFTCLKY 4680
Range 2: 4518 to 4679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 34/54(63%) | 0/54(0%) | Minus/Minus |
Query 145 YLIQLNTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKL 306 Y Q+N ML VLKK VPNSP I A+ P PII+LSV+YS IISSGQRK L Subject 4518 YFRQVNPMLQMVLKKNVPNSPLKRITARLPMLHPIISLSVTYSSIISSGQRKNL 4679
Range 3: 4468 to 4668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 26/67(39%) | 0/67(0%) | Minus/Minus |
Query 95 AEHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVK 295 +E HV GVE+E +F + H + + +HHQLEC + L HF RP++E E+ L + + IL S++ Subject 4468 SEPHVTDGVEKECPKFAAKAHNSETAHAASHHQLECYILLYHFFRPEKEFEYIYLKV*HFFILTSIE 4668
Range 1: 4504 to 4719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 52/72(72%) | 0/72(0%) | Plus/Plus |
Query 92 AFDRSQDEKILDMEVEVLNFFLWPEEMIKEYETLKLMMGSALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRY 307 AFDRSQD IL E+ +L FLWPEE+I+EY+TLKLMMG LGDLA+MRFSGEFGTFFFNT+ NM FS +RY Subject 4504 AFDRSQDGAILAFEICLLRHFLWPEELIEEYKTLKLMMGCQLGDLAVMRFSGEFGTFFFNTMCNMAFSYLRY 4719
Range 2: 4503 to 4703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 44/67(66%) | 0/67(0%) | Minus/Minus |
Query 91 NTMLLRVLKKKVPNSPENLIMAKSPRALPIINLSVSYSLIISSGQRKKLXXXXXXXXXXXSCDLSKA 291 N ML VLKK VPNSPENLI A+SP PII+L V YS I SSG RK LS S +SI SCDLSKA Subject 4503 NAMLHIVLKKNVPNSPENLITARSPSWHPIISLRVLYSSISSSGHRKCLSKHISKASIAPSCDLSKA 4703
Range 3: 4504 to 4704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 31/67(46%) | 0/67(0%) | Minus/Minus |
Query 92 EHHVAQGVEEEGSEFTREPHYGQITQSTAHHQLECLVFLDHFLRPKEEIEHFNLHIKYLLIL*SVKG 292 E HV +EE+ S+ TREPH+ Q+ Q +HHQ E LV L L P E E L Y IL S+KG Subject 4504 ECHVTHSIEEKCSKLTREPHHSQVPQLASHHQFEGLVLLYQLLWP*EMSEQAYLKS*YSTILRSIKG 4704
Range 4: 4505 to 4711 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 34/69(49%) | 0/69(0%) | Plus/Plus |
Query 93 PLTDHRMRRYLIWRLKCSISSFGLRK*SRNTRHSS**WAVLWVIWP**GSLVNSEPSSSTP*ATWCSAV 299 PL D RM Y + R CS S+G R * R+TR S+**W W W **GSLV+ E SS TW S + Subject 4505 PLIDRRMVLY*LLRYACSDISYGQRS**RSTRPSN**WDANWGTWL**GSLVSLEHFSSILCVTWHSHI 4711
Range 5: 4554 to 4703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 24/50(48%) | 0/50(0%) | Plus/Plus |
Query 142 AQFLPLA*GNDQGIRDTQVDDGQCSG*FGHNEVLW*IRNLLLQHPEQHGV 291 AQ P+A G D+G++D Q DDG +G G +EVLW*+ N+ LQ+ HG+ Subject 4554 AQTFPMARGADRGVQDPQTDDGMPTGGPGCDEVLW*VWNIFLQYYV*HGI 4703
Range 6: 4505 to 4699 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 30/65(46%) | 0/65(0%) | Minus/Minus |
Query 93 PCCSGC*RRRFRIHQRTSLWPNHPEHCPSST*VSRIP*SFPQAKGRN*ALQPPYQVSSHPVICQR 287 PC + *R+ F+ HQRTS P P PSS * S P S P A G *A V HP I QR Subject 4505 PCYT*Y*RKMFQTHQRTSSQPGPPVGIPSSV*GSCTPLSAPLAIGNV*ASISQKLV*HHPAIYQR 4699
Nucleotide Sequence (542 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
303.9 | 917.0 | 26% | 7.099e-82 | 37% | NC_003604 | |
112.4 | 357.8 | 28% | 3.22e-24 | 38% | NC_018458 | |
90.0 | 90.0 | 15% | 1.848e-17 | 41% | NC_016404 | |
67.5 | 67.5 | 15% | 1.06e-10 | 38% | NC_011106 | |
76.2 | 121.3 | 26% | 4.364e-21 | 28% | NC_003602 |
Alignments
Range 1: 5651 to 6142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.9 bits(657) | 0.0 | 127/164(77%) | 0/164(0%) | Plus/Plus |
Query 51 AMSGGDFQGLKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 AMS G K SS +IKVF+VKR+T+DLETLNK+LHRGD Y TELIEKVFPRRT+KCVIHK+++VKDGRVDCDLDIMD GLD+++EEEFPLYHVGCIVVALMPHGKNL GKV VEV DTRL SRISR+ MDMSKP+SACADFPGYFIST+DLLNGYT Subject 5651 AMSQEGSLGTKASSFEPQDIKVFHVKRSTRDLETLNKSLHRGDVYNTELIEKVFPRRTKKCVIHKDVIVKDGRVDCDLDIMDEGLDDINEEEFPLYHVGCIVVALMPHGKNLQGKVSVEVLDTRLVDGASRISRTLMDMSKPLSACADFPGYFISTSDLLNGYT 6142
Range 2: 5632 to 5838 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 36/69(52%) | 0/69(0%) | Minus/Minus |
Query 32 ITHFLVRLGNTFSINSVS*SSPRCRALFRVSKSLVFLFTLKTFIS*RTRDDSFKP*KSPPDIAWVRLPL 238 +THF V LG TFS++SV +SPRCR L RVS+SLV L T KT IS ++D++F P + DIA + L Subject 5632 MTHFFVLLGKTFSMSSVLYTSPRCRLLLRVSRSLVLLLT*KTLISCGSKDEAFVPREPSCDIAVITFRL 5838
Range 3: 6043 to 6141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 25/33(76%) | 0/33(0%) | Minus/Minus |
Query 443 VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDI 541 VYP SRS+VLMK PGKSA AL G DISM++LDI Subject 6043 VYPFSRSLVLMKYPGKSAQALNGFDISMRVLDI 6141
Range 4: 5938 to 5991 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 14/18(78%) | 0/18(0%) | Minus/Minus |
Query 338 PFRFLPWGINATTMQPTW 391 P RFLP GI+ATTM PTW Subject 5938 P*RFLPCGISATTMHPTW 5991
Range 5: 5702 to 5998 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 37/99(37%) | 0/99(0%) | Minus/Minus |
Query 102 YLAVQILAMGHQRHHDATDMV*WELLLVHLIKPCIHDIKVTIDPTIFNHQLLMYHALPCPPWKHLLYQLGLIIIPTV*SLV*SL*ILGVPLHVEDLYLM 398 +LA+++L M HQRHH A MV WE L ++++ IHD+++ + + N + + AL PWK+LLY+L +I + + +LV S + G P V+DL ++ Subject 5702 HLALKVLTMWHQRHHYAPYMVEWEFLFIYVV*ALIHDVQIAVHAAVLNDDVFVDDALLRSPWKNLLYELCVIHVTPMQALVESFEVSGAPFDVKDLNIL 5998
Range 6: 6041 to 6142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 19/34(56%) | 0/34(0%) | Minus/Minus |
Query 441 CVPVE*ISGAYEVTREICTCTYGLGHIHEAP*YP 542 CV V+ I+GA EV RE+ T L HIHE P YP Subject 6041 CVSVQQITGANEVPREVSTGAQWL*HIHEGPRYP 6142
Range 7: 5638 to 5835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 32/66(48%) | 0/66(0%) | Plus/Plus |
Query 38 ESDPSYVRRRFSGFKGIVTRSS*DKGLQREEEHQGFRDSKQGSTPWG*L*DRVDREGVSKADKEVR 235 E D SYV RRFSG+KG++ R++ GL R++EHQ R+S+Q +* R REG SK ++EVR Subject 5638 EGDYSYVARRFSGYKGLILRATRY*GLSRQKEHQRPRNSQQEPASG*RV*HRAHREGFSKENEEVR 5835
Range 8: 6016 to 6141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/42(43%) | 0/42(0%) | Plus/Plus |
Query 416 HKTQRTKFADIKELHGYVQAHKCMCRFPWLLHKHH*STQRVH 541 H+ R DI + HGYV+A + +C P +LH H *S +R+H Subject 6016 HQAGRRGIKDI*DPHGYVKAIERLC*LPGVLH*HQ*SAERIH 6141
Range 9: 5926 to 5976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 11/17(65%) | 0/17(0%) | Plus/Plus |
Query 326 VPTIPCRLHRGGVDAPW 376 +PT+PCR+H GG DA W Subject 5926 IPTLPCRVHSGGADATW 5976
Range 10: 5799 to 5999 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 27/67(40%) | 0/67(0%) | Plus/Plus |
Query 199 *RRCFQGGQGSA*YIRSWWLKMVGSIVTLISWIQGLMRWTRRSSHYTMSVASWWR*CPMARI*TAR* 399 *RR FQG + SA ++ L+ SW++ +R+SH TM A WWR*C M R AR* Subject 5799 *RRFFQGERRSASSTKTSSLRTAAWTAIWTSWMRA*TT*MKRNSHSTM*GA*WWR*CHMVRTFKAR* 5999
Range 11: 6039 to 6140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 18/34(53%) | 0/34(0%) | Plus/Plus |
Query 439 RGYQGASWICPSP*VHVQISLVTS*APLIYSTGT 540 +GY G SWIC S * V S TS AP+I T T Subject 6039 QGYLGPSWICQSH*APVLTSRGTSLAPVIC*TDT 6140
Range 12: 5604 to 5834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 31/77(40%) | 0/77(0%) | Minus/Minus |
Query 4 RTSLSALETPSLSTRSHNHPHGVEPCLESLNPWCSSSR*RPLSHEERVTIPLNPENLRRT*LGSDSH*TPKHTQHTL 234 RTS +LE PSL + C E WCS R RP R PL PENL T*L S S T + T L Subject 5604 RTSSFSLEKPSL*ALCYTRHPDAGSC*EFRGLWCSF*RERP*YLVARRMRPLYPENLLAT*L*SPSACTDRVTTFLL 5834
Range 1: 5987 to 6235 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 45/83(54%) | 0/83(0%) | Plus/Plus |
Query 294 DTGLDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 D + ++DEE +P+YH GC+VVALMPHG+N+ GKV + KD RL+ I D+ K ISA A+FPGYFIST DL GYT Subject 5987 DGVVGKLDEEAYPIYHAGCLVVALMPHGRNVKGKVALRFKDRRLKAGKDVIGSMVADLKKGISAHAEFPGYFISTADLKAGYT 6235
Range 2: 5768 to 6016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 38/83(46%) | 0/83(0%) | Plus/Plus |
Query 78 LKESSRVLHEIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMDTGLDEVDEEE 326 + SS E+K+F VK+ E LNKA+ R D Y+ ELIE++ P+RTRKCV+HKE+ V + RV+ +++IMD G+ +EE Subject 5768 MASSSDNSREVKIFEVKKGATGFEELNKAISRSDVYDNELIERIMPKRTRKCVVHKEISVVNSRVNVEMEIMDDGVVGKLDEE 6016
Range 3: 6012 to 6119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 15/36(42%) | 0/36(0%) | Plus/Plus |
Query 319 RRSSHYTMSVASWWR*CPMARI*TAR*WWRSRTQDS 426 RR T A WW *CP A R + SRT S Subject 6012 RRRIRSTTQDAWWWH*CPTAGTLRVRSRFASRTVGS 6119
Range 4: 6154 to 6210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 9/19(47%) | 0/19(0%) | Plus/Plus |
Query 461 GYVQAHKCMCRFPWLLHKH 517 G + HKC CR L H H Subject 6154 GSQERHKCTCRVSRLFHIH 6210
Range 5: 6031 to 6234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 39/68(57%) | 0/68(0%) | Minus/Minus |
Query 338 VYPLSRSVVLMK*PGKSAHALMGLDISMKLLDIREFGPXXXXXXXXXXXLPFRFLPWGINATTMQPTW 541 VYP RS V MK*PG SA ALM S +L I F LSL SL + TLP FLPWGI+ATT P W Subject 6031 VYPAFRSAVDMK*PGNSACALMPFLRSATILPITSFPALSLRSLKRSATLPLTFLPWGISATTKHPAW 6234
Range 1: 5965 to 6201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 32/79(41%) | 0/79(0%) | Plus/Plus |
Query 303 LDEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGY 539 +D ++EE+ P H+GC+ +A++PHG+ + G V ++V+D R + + + D+ +SA A FPGYF+STTD+ NGY Subject 5965 IDGLNEEKQPYLHLGCVAIAVIPHGRAMKGTVQIKVEDQRFKEGHGTVCSFKCDLKDALSAYASFPGYFVSTTDVKNGY 6201
Range 1: 5988 to 6224 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 30/79(38%) | 0/79(0%) | Plus/Plus |
Query 306 DEVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 D +D+E P HVGCIVV M ++ G V ++D RL+G + I S ++A ADFP Y I+ DL G++ Subject 5988 DGLDKEATPFMHVGCIVVGFMSLARSAVGTYKVIIQDDRLKGEHKNICAFTFQTSDKVAAFADFPDYCIAVEDLAAGFS 6224
Range 1: 5868 to 6101 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 26/78(33%) | 0/78(0%) | Plus/Plus |
Query 309 EVDEEEFPLYHVGCIVVALMPHGKNLNGKVVVEVKDTRLRGPNSRISRSFMDMSKPISACADFPGYFISTTDLLNGYT 542 +++ +P H+GC+ + ++PHG++L G+V ++DTR ++ + + +SA + FPGYF+ST DL++G+T Subject 5868 KIETTSYPYLHLGCVAICVIPHGRDLKGEVEFTLRDTRFLPRSNPLMSFGCKAERMLSAFSAFPGYFVSTYDLIDGFT 6101
Range 2: 5661 to 5852 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 18/64(28%) | 0/64(0%) | Plus/Plus |
Query 105 EIKVFNVKRNTKDLETLNKALHRGDDYETELIEKVFPRRTRKCVIHKELVVKDGRVDCDLDIMD 296 ++ VF + ++ + A+ + Y+ E++FP R K V+H+E+ V+DG V +++MD Subject 5661 QLSVFPKPKEELGVKGVKSAIAKTKVYDLSYFERLFPTRVFKSVVHEEIRVRDGEVKQVINLMD 5852