Nucleotide Sequence (346 letters)
Query ID: | ds2016-57_12 |
Query definition: | No definition line |
Query length: | 638 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
103.2 | 185.1 | 23% | 3.599e-24 | 30% | JQ045335.1 | |
101.0 | 128.1 | 34% | 2.886e-22 | 46% | AF296439.1 | |
101.0 | 128.1 | 34% | 2.886e-22 | 46% | NC_007539.1 | |
111.0 | 206.8 | 25% | 7.512e-25 | 46% | KP782031.1 | |
113.3 | 169.8 | 26% | 1.202e-23 | 42% | KX882984.1 |
Alignments
Raphanus sativas chrysovirus 1 segment RNA1 putative RNA dependent RNA polymerase gene, complete cds
Sequence ID: JQ045335.1 Length: 3638 Number of Matches: 3
Range 1: 2309 to 2584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 39/92(42%) | 0/92(0%) | Minus/Plus |
Query 1 DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 276 D ++ GLFSGWRGTTW+N LN+ Y+ ++ R++ + Y DHGGDD+D+ F+ D + + VM+L+ ++AT+IKQMI +AE Subject 2309 DGDKHEIKKGLFSGWRGTTWINTVLNHVYVAIGVMCCERIYRDFKPAYFDHGGDDLDVGFMAPQDCYKMMVVMDLIGYEATKIKQMIGYDAE 2584
Range 2: 2249 to 2314 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 12/22(55%) | 0/22(0%) | Minus/Plus |
Query 268 YDIFVSAIADSMYSMWLKTDDG 333 Y F AIADS Y MW+ DG Subject 2249 YSTFCCAIADSFYHMWVIDPDG 2314
Range 3: 2342 to 2584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 24/81(30%) | 0/81(0%) | Plus/Minus |
Query 1 LSFVCYHLFYLRCVELH*VHNA*KSYRICKLQKRHIYVISTMVDIFQ*AVRKKSRVNNQCTLYICIVQPTVQPCCTSPT*K 243 LS V YHLF LRC + +H+ I + + HI +I+ ++ + + + S + ++ +VQ V P C +PT*+ Subject 2342 LSIVPYHLFNLRCFIPYQIHHHHHLITILRCHESHIQIITAVIKVRRLKISVYSFTTHHSYCHVHVVQHCVDPSCPTPT*E 2584
Penicillium chrysogenum virus segment 1 RNA dependent RNA polymerase gene, complete cds
Sequence ID: AF296439.1 Length: 3562 Number of Matches: 2
Range 1: 2284 to 2559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 44/92(48%) | 0/92(0%) | Minus/Plus |
Query 1 DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 276 D V K+ GL+SGWRGTTW+N LN+ Y+ AL RLF + Y+DHGGDDID+ E A FL VM+ M F A + KQM +E Subject 2284 DGNVHKIWRGLYSGWRGTTWINTVLNFCYVHIALQNVERLFGVRVVLYVDHGGDDIDLGLSEPAVMPWFLEVMDAMLFKANKWKQMFGTRSE 2559
Penicillium chrysogenum virus segment 1, complete genome
Sequence ID: NC_007539.1 Length: 3562 Number of Matches: 2
Range 1: 2284 to 2559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 44/92(48%) | 0/92(0%) | Minus/Plus |
Query 1 DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 276 D V K+ GL+SGWRGTTW+N LN+ Y+ AL RLF + Y+DHGGDDID+ E A FL VM+ M F A + KQM +E Subject 2284 DGNVHKIWRGLYSGWRGTTWINTVLNFCYVHIALQNVERLFGVRVVLYVDHGGDDIDLGLSEPAVMPWFLEVMDAMLFKANKWKQMFGTRSE 2559
Brassica campestris chrysovirus 1 isolate Hubei segment RNA1, complete sequence
Sequence ID: KP782031.1 Length: 3639 Number of Matches: 4
Range 1: 2334 to 2603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 41/90(46%) | 0/90(0%) | Minus/Plus |
Query 1 GVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 270 G K++ GLFSGWRGTTW+N LN+ Y+ ++ R++ + Y DHGGDD+D+AF + D R +SVM+ + ++AT+IKQM+ +AE Subject 2334 GKHKIEKGLFSGWRGTTWINTVLNFVYVSVGVMCCERIYSDFKPAYFDHGGDDLDVAFYKPQDCYRMMSVMDRIGYEATRIKQMVGYDAE 2603
Range 2: 2268 to 2318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 9/17(53%) | 0/17(0%) | Minus/Plus |
Query 283 YDIFVSAIADSMYSMWL 333 Y F AIA+S Y MW+ Subject 2268 YGYFCHAIAESFYHMWV 2318
Wuhan insect virus 30 strain WHZM9752 hypothetical protein gene, complete cds
Sequence ID: KX882984.1 Length: 3414 Number of Matches: 2
Range 1: 2192 to 2452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 44/87(51%) | 0/87(0%) | Minus/Plus |
Query 1 KLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE 261 K+ GL+SGWRGTTW+N LN+ Y+ AL VY RL+ S + +DHGGDDID+ F + D+ RFL +M+ M F+A + KQMI + +E Subject 2192 KIMRGLYSGWRGTTWINTVLNFCYVAVALEVYERLYGVSGVLMVDHGGDDIDLMFSDGIDAQRFLRIMDSMLFNANEWKQMIGERSE 2452
Range 2: 2203 to 2442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 34/80(42%) | 0/80(0%) | Plus/Minus |
Query 11 SAIICFICVASNFIRFITLRNLTESANSRNAISMSSPPWSIYFSELLGKSLE*TTSAHCIYA*FSQQFNHVVPLQPENKP 250 S IICF +A N I + + S S N SMSSPPWS + L S T++A FS F VVPLQPE +P Subject 2203 SPIICFHSLALNNILSMMRKKR*ASIPSENIRSMSSPPWSTISTPLTP*SRSYTSNATAT*QKFSTVFIQVVPLQPEYRP 2442