rps2tree

pfam00286 Flexi_CP

pfam00286, Flexi_CP, Viral coat protein. Family includes coat proteins from Potexviruses and carlaviruses.




pfam00286_Flexi_CP/pfam00286_w_qry_aligned.fasta
pfam00286_Flexi_CP/clusters.csv
pfam00286_Flexi_CP/cluster_nb_reads.csv
pfam00286_Flexi_CP/identity_matrix.csv


pfam00680 RdRP_1

pfam00680, RdRP_1, RNA dependent RNA polymerase.




pfam00680_RdRP_1/pfam00680_w_qry_aligned.fasta
pfam00680_RdRP_1/clusters.csv
pfam00680_RdRP_1/cluster_nb_reads.csv
pfam00680_RdRP_1/identity_matrix.csv


pfam00978 RdRP_2

pfam00978, RdRP_2, RNA dependent RNA polymerase. This family may represent an RNA dependent RNA polymerase. The family also contains the following proteins: 2A protein from bromoviruses putative RNA dependent RNA polymerase from tobamoviruses Non structural polyprotein from togaviruses.




pfam00978_RdRP_2/pfam00978_w_qry_aligned.fasta
pfam00978_RdRP_2/clusters.csv
pfam00978_RdRP_2/cluster_nb_reads.csv
pfam00978_RdRP_2/identity_matrix.csv


pfam01443 Viral_helicase1

pfam01443, Viral_helicase1, Viral (Superfamily 1) RNA helicase. Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.




pfam01443_Viral_helicase1/pfam01443_w_qry_aligned.fasta
pfam01443_Viral_helicase1/clusters.csv
pfam01443_Viral_helicase1/cluster_nb_reads.csv
pfam01443_Viral_helicase1/identity_matrix.csv


pfam01660 Vmethyltransf

pfam01660, Vmethyltransf, Viral methyltransferase. This RNA methyltransferase domain is found in a wide range of ssRNA viruses, including Hordei-, Tobra-, Tobamo-, Bromo-, Clostero- and Caliciviruses. This methyltransferase is involved in mRNA capping. Capping of mRNA enhances its stability. This usually occurs in the nucleus. Therefore, many viruses that replicate in the cytoplasm encode their own. This is a specific guanine-7-methyltransferase domain involved in viral mRNA cap0 synthesis. Specificity for guanine 7 position is shown by NMR in and in vivo role in cap synthesis. Based on secondary structure prediction, the basic fold is believed to be similar to the common AdoMet-dependent methyltransferase fold. A curious feature of this methyltransferase domain is that it together with flanking sequences seems to have guanylyltransferase activity coupled to the methyltransferase activity. The domain is found throughout the so-called Alphavirus superfamily, (including alphaviruses and several other groups). It forms the defining, unique feature of this superfamily.




pfam01660_Vmethyltransf/pfam01660_w_qry_aligned.fasta
pfam01660_Vmethyltransf/clusters.csv
pfam01660_Vmethyltransf/cluster_nb_reads.csv
pfam01660_Vmethyltransf/identity_matrix.csv


pfam02123 RdRP_4

pfam02123, RdRP_4, Viral RNA-directed RNA-polymerase. This family includes RNA-dependent RNA polymerase proteins (RdRPs) from Luteovirus, Totivirus and Rotavirus.




pfam02123_RdRP_4/pfam02123_w_qry_aligned.fasta
pfam02123_RdRP_4/clusters.csv
pfam02123_RdRP_4/cluster_nb_reads.csv
pfam02123_RdRP_4/identity_matrix.csv


pfam03225 Viral_Hsp90

pfam03225, Viral_Hsp90, Viral heat shock protein Hsp90 homologue.




pfam03225_Viral_Hsp90/pfam03225_w_qry_aligned.fasta
pfam03225_Viral_Hsp90/clusters.csv
pfam03225_Viral_Hsp90/cluster_nb_reads.csv
pfam03225_Viral_Hsp90/identity_matrix.csv


pfam05892 Tricho_coat

pfam05892, Tricho_coat, Trichovirus coat protein. This family consists of several coat proteins which are specific to the ssRNA positive-strand, no DNA stage viruses such as the Trichovirus and Vitivirus.




pfam05892_Tricho_coat/pfam05892_w_qry_aligned.fasta
pfam05892_Tricho_coat/clusters.csv
pfam05892_Tricho_coat/cluster_nb_reads.csv
pfam05892_Tricho_coat/identity_matrix.csv


pfam05919 Mitovir_RNA_pol

pfam05919, Mitovir_RNA_pol, Mitovirus RNA-dependent RNA polymerase. This family consists of several Mitovirus RNA-dependent RNA polymerase proteins. The family also contains fragment matches in the mitochondria of Arabidopsis thaliana.




pfam05919_Mitovir_RNA_pol/pfam05919_w_qry_aligned.fasta
pfam05919_Mitovir_RNA_pol/clusters.csv
pfam05919_Mitovir_RNA_pol/cluster_nb_reads.csv
pfam05919_Mitovir_RNA_pol/identity_matrix.csv