Queries
Nucleotide Sequence (313 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 14978 to 15286 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.6 bits(469) | 0.0 | 95/103(92%) | 0/103(0%) | Plus/Plus |
Query 3 IDDATLLAPSPVAPAPTEGVGPSEQLDVVALTSDVTELINTRGQGKISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI 311 IDD +LL PSPV P T GVGPSEQLDVVALTSDVTELINTRGQGKI FPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI Subject 14978 IDDTSLLVPSPVVPESTGGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI 15286
Range 2: 14977 to 15288 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 94/104(90%) | 0/104(0%) | Minus/Minus |
Query 2 CIMATIMFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKLILPCPLVLINSVTSDVKATTSSCSDGPTPSVGAGATGLGANNVASSM 313 CIMATI+FPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGK ILPCPLVLINSVTSDVKATTSSCSDGPTP V +G TGLG NN SS+ Subject 14977 CIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPPVDSGTTGLGTNNDVSSI 15288
Range 3: 14978 to 15286 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 82/103(80%) | 0/103(0%) | Minus/Minus |
Query 3 YHGHYHVPHISWCLTPAFRKNESA*PCVYL*SFRNR*IPLVVDIRFIDRQH*VGKTYLALPPGVDQFRYVRR*SHYV*LL*WTYTFRRRWCYWTWR*QRRIVD 311 YHGHYH+PHISWCLTPAFRKNESA* CVYL*SFR R IPL+VDIRFIDR H*V KTYL LPP VDQFRYV R*SHY+ LL*WTYT RR W T *QRR+V+ Subject 14978 YHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTSRRLWYDRTRY*QRRVVN 15286
Range 4: 14992 to 15288 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 79/99(80%) | 0/99(0%) | Plus/Plus |
Query 17 VVSAKSSSTSAYGRCRSIRATRRSGFNV*RNGIDQHQGAGQDKFSRLSVVDQ*SGYLRRAVFTDYGSSTDKRKATQTRSFERRESNTTRYGEHDSGHDT 313 VVS +S T YGRCRSIRA SGFNV RNGIDQH GA D FSRLSV+DQ*SGYLR AVF D GSSTDKRK TQTRSFERRESNTTRYGE+DSGHDT Subject 14992 VVSTESCRTRVYGRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDT 15288
Range 5: 15042 to 15287 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 67/82(82%) | 0/82(0%) | Plus/Plus |
Query 67 HQSN*T*WL*RLT*RN*STPGGRAR*VFPTQCCRSMKRISTTSGIYRLRKLYR*TQGYADSFFRKAGVKHHEIWGT**WP*Y 312 HQS+ *WL*R T*RN*ST GG+ R VF TQC RSMKRIST SGI R RKLYR*TQ YADSFFRKAGVKHHEIWG **WP*Y Subject 15042 HQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*Y 15287
Range 6: 15048 to 15287 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 65/80(81%) | 0/80(0%) | Minus/Minus |
Query 73 VSWPLSCSPYLVVFDSRLSKERVCVALRLSVELP*SVNTARRRYPLH*STTLSRENLSCPAPWC*SIPLRQTLKPLRLVA 312 VSWPLS SPYLVVFDSRLSKERVCV LRLSVELP S NTA RRYPLH*S TLS EN+S AP C*SIPLR+TLKPL A Subject 15048 VSWPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAA 15287
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 15877 to 16185 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.1 bits(168) | 0.0 | 33/103(32%) | 0/103(0%) | Plus/Plus |
Query 3 IDDATLLAPSPVAPAPTEGVGPSEQLDVVALTSDVTELINTRGQGKISFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMI 311 +D+ +L+ V P P+ +L+ + + + +L+ RG+ P+ V +I E+DIYDER++ EAL++N+RL L+ S G + D GN +V +I Subject 15877 VDEGSLVDEPAVTEQPMNVTRPTSELEKLQMVGTLDKLVVERGKAIYDTPEKVFNIRESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLI 16185
Nucleotide Sequence (2006 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1576.8 | 8633.4 | 44% | 0 | 96% | NC_004667 | |
713.6 | 1628.0 | 35% | 0 | 28% | NC_022072 | |
255.8 | 783.4 | 36% | 3.153e-121 | 23% | NC_029783 | |
178.4 | 420.3 | 17% | 1.337e-60 | 33% | NC_005065 | |
227.9 | 927.9 | 32% | 2.144e-136 | 23% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 4899 to 6902 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1576.8 bits(3435) | 0.0 | 660/668(99%) | 0/668(0%) | Plus/Plus |
Query 2 VSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGVTRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*AYEFWTDLRR 2005 VSSGWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQG TRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYV IAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTT LVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEV+MMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*AYEFWTDLRR Subject 4899 VSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVLIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*AYEFWTDLRR 6902
Range 2: 4899 to 6902 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1533.3 bits(3340) | 0.0 | 652/668(98%) | 0/668(0%) | Minus/Minus |
Query 2 PSKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQXXXXXXXXXXXXXSNWPFGQRSYYWFILTANDLFRVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*HRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALSKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGYISSHKQRPVRPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGNTLALWLLVWNTW*FLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRPP**N 2005 PSKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIG LRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVIS SNWPFGQRSYYWF+LTANDLFRVTLFRSPYGH*GQQVANI*RTPV FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH* RRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFAL KDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDG ISSHKQRPV PLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSG+TLALWLLVWNTW* LIRHAAG*LQHPAYTKDAPSCPERQTDAPFVD VY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPAL+REVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*T+V+DAWVLNCR*DIL* TRPP**N Subject 4899 PSKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*RRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALGKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGSTLALWLLVWNTW*LLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTRPP**N 6902
Range 3: 4898 to 6442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1156.2 bits(2517) | 0.0 | 507/515(98%) | 0/515(0%) | Minus/Minus |
Query 1 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMNTYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHHIEYVDXXXXXXXXXSDRALPPDFGVIVLVTPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDET 1545 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIM TSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTN+VVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAM+TYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SG RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLV PWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSS+EFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHL+EKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR RGHPDET Subject 4898 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNVVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMSTYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDET 6442
Range 4: 4900 to 6060 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
865.2 bits(1882) | 0.0 | 377/387(97%) | 0/387(0%) | Plus/Plus |
Query 3 FHQGGLVS*RIS*RQLSTQASLTIV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TLSTKGASV*RSGQLGASLV*AGCCS*PAACRMRNHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGRTGRCLWLEI*PSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSLLRAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRRC*WTNSLSHPIAQPPLRLMWEVL 1163 FHQGGLV *RIS*RQLSTQAS T V*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*T STKGASV*RSGQLGASLV*AGCCS*PAACRMR+HQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRG TGRCLWLEI PSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSL RAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRR *WTNSLSHPIAQPPLRLMWEVL Subject 4900 FHQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSLPRAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRRR*WTNSLSHPIAQPPLRLMWEVL 6060
Range 5: 5095 to 5790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
513.8 bits(1115) | 0.0 | 226/232(97%) | 0/232(0%) | Minus/Minus |
Query 198 YLFQL*IRTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RLYF*P*ATPCTSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV*EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVISHPTRRRLTATSCLHQRRAELP*TSN*CALRR*SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT 893 YLFQL*+RTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**R YF*P*ATPC SSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLV SHPTRRRLTATSCLHQRRAELP*TSN*CALRR SLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT Subject 5095 YLFQL*VRTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT 5790
Range 6: 6257 to 6901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
454.2 bits(985) | 0.0 | 211/215(98%) | 0/215(0%) | Plus/Plus |
Query 1360 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IIQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G*TSSKIAVQKANWNY**RS*NKR*RVLVHDPXXXXXXXXXXXXKRKRNTSDDSA*STGKNIQ*CGIV*DEEGR*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWLLSRYMSV*ILDRPSK 2004 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*I+QVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G TSSKIAVQKANWN+**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEE R*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWLLSRYMSV*ILDRPSK Subject 6257 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWLLSRYMSV*ILDRPSK 6901
Range 7: 4898 to 5356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
359.4 bits(778) | 0.0 | 150/153(98%) | 0/153(0%) | Plus/Plus |
Query 1 CFIRVASCPRGYLNGN*VPKRL*PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLYRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EITRCSKPATTEPRCYQNNHT 459 CFIRVASCPRGYLNGN*VPKRL PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKL+RRRAHQFDVQGNSARLWCRQDVAVSRRRVG*E+TRCSKPATTEPRCYQNNHT Subject 4898 CFIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT 5356
Range 8: 5702 to 6157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.8 bits(709) | 0.0 | 150/152(99%) | 0/152(0%) | Plus/Plus |
Query 805 QVGHRSHFSFNTRRLACERPTVRIHS*KRYLY*GQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKYXXXXXXXXXXXXQQCYHS*LQGGKLYRQ 1260 QVGHRSHFSFNTRRLACERPTVR HS*KRYLY GQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKYGGEEERSEFGRSQQCYHS*LQGGKLYRQ Subject 5702 QVGHRSHFSFNTRRLACERPTVRTHS*KRYLYQGQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKYGGEEERSEFGRSQQCYHS*LQGGKLYRQ 6157
Range 9: 6494 to 6901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.0 bits(692) | 0.0 | 136/136(100%) | 0/136(0%) | Minus/Minus |
Query 1597 LRRSVQNSYAHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 2004 LRRSVQNSYAHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI Subject 6494 LRRSVQNSYAHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 6901
Range 10: 6100 to 6495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
309.4 bits(669) | 0.0 | 130/132(98%) | 0/132(0%) | Plus/Plus |
Query 1203 WKVSTVLPQLTPGW*TLSSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNHTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRINQ**DRCPKGQ 1598 WKVSTVLPQLTPGW*TLSSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLN TGVR*MFATCCPQ*P*GERKSVTLKRSLAVR NQ**DRCPKGQ Subject 6100 WKVSTVLPQLTPGW*TLSSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQ 6495
Range 11: 6112 to 6486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 122/125(98%) | 0/125(0%) | Minus/Minus |
Query 1215 WTAILLLVYPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCMI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTXXXXXXXXXXXLDASCTPHPPKPFYTFP*R*SLPPWS*LW*HC 1589 WTAILLLV PYR*RPFQGNTFPFPLRSLRTTSSKHLTDTC I*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASC PHPPKPFYTFP*R*SLPPWS*LW*HC Subject 6112 WTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASCAPHPPKPFYTFP*R*SLPPWS*LW*HC 6486
Range 12: 6589 to 6903 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.9 bits(574) | 0.0 | 104/105(99%) | 0/105(0%) | Plus/Plus |
Query 1692 EKEKKHQ**QCMKHREKHSVMWYCLGRRRPMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVAFEVYERMNFGPTFEG 2006 EKEKKHQ**QCMKHREKHSVMWYCLGRR+PMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVAFEVYERMNFGPTFEG Subject 6589 EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVAFEVYERMNFGPTFEG 6903
Range 13: 6619 to 6903 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 94/95(99%) | 0/95(0%) | Minus/Minus |
Query 1722 PFEGRSKIHTLIYLESNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHRPSSS*TIPHH*MFFPVLHA 2006 PFEGRSKIHTLIYLESNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHR SSS*TIPHH*MFFPVLHA Subject 6619 PFEGRSKIHTLIYLESNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHRLSSS*TIPHH*MFFPVLHA 6903
Range 14: 5408 to 5650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 79/81(98%) | 0/81(0%) | Plus/Plus |
Query 511 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDVQGVAYG*KYSRHYRRRC 753 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*ED+QGVAYG*KY RHYRRRC Subject 5408 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC 5650
Range 15: 4900 to 5049 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 48/50(96%) | 0/50(0%) | Minus/Minus |
Query 3 GYLMDSTPRHQRGMVRLHPSCTSALNNGQRRLGT*LPLRYPLGHEATLMK 152 GYLMDSTPRHQRGMVRLHPSCTSALN+G+RRLGT*LPLRYPLGHEATLMK Subject 4900 GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMK 5049
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 6434 to 7939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
713.6 bits(1551) | 0.0 | 291/502(58%) | 0/502(0%) | Plus/Plus |
Query 473 KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI*A 1978 K SE + R + STY++W EQD+V KC+WL+AD+P++AL+P M FE V T T+EDA +EYLKY AIGIER Y A + IAV A+GVLK P Q YE LPG YK + ++H T+DGLR+ D+PYVF+ EKGIF KG+ + + + +CD +LVFHDA+N G LK+AR G+VG+ FKSF Y C NAPPGGGKTTM+V++F++ P +T +TAN+GS++DIN + K+ L +ATT+NS+VVNF +R MY R+LVDEVYMMH+GLLQ G FA+GA EG+F+GD++QIPFINREK+FR + P+K + YT ++YRCPLDVC++LS++ EKCY VVSG PVVRS KRPIG+ DVA+I ADVYLC TQ EK +MKR L G+ PVMTVHEAQGKTF VVLFRTK+ADDS+F QPH LV LSRHT SLVYAALSSKL D+VG+ I + +VS+ALLHTFAP+GCFR +*A Subject 6434 KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPYVFLMEKGIFCKGQSLCGGMHGDETALLCDSLLVFHDALNFCGCLKIARLGLVGKEFKSFNYTCVNAPPGGGKTTMMVEKFLEQPRTTTMVTANLGSADDINKKLDKKLEELGLDRAATTINSKVVNFSLRLMYDRILVDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHTSSLVYAALSSKLSDRVGSMIDSTASSTVSNALLHTFAPSGCFRDV*A 7939
Range 2: 5942 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 61/112(54%) | 0/112(0%) | Plus/Plus |
Query 5 SSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRAT 340 S GWP VL++I+ Y FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F +C+ VAS D F+M GFQR + H+V S EGRISLTFR+T Subject 5942 SRGWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST 6277
Range 3: 6796 to 7497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 114/234(49%) | 0/234(0%) | Minus/Minus |
Query 835 *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMNTYGRSLTRKPSCV 1536 *HFS ++ DN TSNG Y VY F G + N FS FM GI* SP K PS AP AK P+CSKP CIM TSST+ YI L KFTTLE VVA L + + MSS LP LAV + V+ G N ST IVV PPPGGAL + K LN PT P A F P K ASW TS SH + +S PL KIPFS NTYG S + KPS V Subject 6796 *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKPSCIM*TSSTRIRSYISLKEKFTTLEFIVVAALSRPNSSNFLSNFLLMSSALPKLAVTIVVVRGCSKNFSTIIVVFPPPGGALTQV*LKLLNSLPTKPSLAIFKHPQKFKASWNTSKESHNSAVSSPCMPPHNDCPLQKIPFSIKNTYGISHSLKPSSV 7497
Range 4: 7558 to 7938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 72/127(57%) | 0/127(0%) | Minus/Minus |
Query 1597 AHIPRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 1977 AH RKQP GANV +A T I PTLS +FELRAA*T E VCL++ T G +N SSA VLN TT VFPCAS TVITG + P FN FIS FS V HKYTSA I ATS+ +PI Subject 7558 AHTSRKQPDGANVCRRALLTVLDAVLSIIDPTLSLSFELRAA*TREEVCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI 7938
Range 5: 6001 to 6276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 48/92(52%) | 0/92(0%) | Minus/Minus |
Query 64 VALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSK 339 V LNVKL+ PS E T C +L*KP I S EAT LH + K A P TV IGLS G*H S SAWN PP Y TKQWSK Subject 6001 VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK 6276
Range 6: 6496 to 6768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 49/91(54%) | 0/91(0%) | Minus/Minus |
Query 535 L*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCS 807 L* KPG+ S* G F TP A +TAI L NALY LS+PIA YF+YS ASS V V T S I G RA G SA + SH +T SCS Subject 6496 L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCS 6768
Range 7: 6446 to 7417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 90/324(28%) | 0/324(0%) | Minus/Minus |
Query 485 VYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSPDDKVYHPGVNCGSTVETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*HRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALSKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGYISSHKQRPVRPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSL 1456 V + LL + + + ++LL VYE L+ +S + + + + L * LMHHV LI++N IH +V++ + G Q L+ + V+ T+ +SR L E + HR + + I + + L+ + A SSDF +I G++E Q +A ++ + + ++DT E++R ++ QA+L + N + LV+ +AR ++L R Q+TF S G ++ +R V+PLN +LQVL I P + K H KS + IIS +P+ L + +L P + P P L Subject 6446 VLDQVLLRFEETMLAAEYLLTVYERNLMNISVENSLFGS*SKTPKLQ*TLMHHVDLINKNTVIHQS*REVHNLRIYRGGCSV*AQFLQLLVQLLVDVVGTTQVSRYHRSRTRLLQELFNHHRSFSTSGWGIDTSVVKALEFLTNQAQSSDF*APTEIQGVMEYQQRIA*QRRLVTMHAPTQRLPFAEDTLLHQEHIRYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL 7417
Range 8: 7616 to 7963 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 44/116(38%) | 0/116(0%) | Minus/Minus |
Query 1655 SKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQL 2002 SK+ K RSY SKAT R E V++ V Y R N + + QL S IN+ + +++ +RL E V+ L KQ + E FSL M CHH S ++ PLH+ LL+L Subject 7616 SKLPSKLRRSYISKATRRCECVQKGVTYCARCGAVNHRPNPVTQLRT*SSINERRSMP*KSH*SVRLRVEHTVVSALSSKQNNFLESFSLRLMDCHHRFNSSEAI*LPLHLSLLRL 7963
Range 9: 5951 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 36/109(33%) | 0/109(0%) | Minus/Minus |
Query 14 SCPERQTDAPFVDRVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRP 340 S PE QTD+ + M V PLK H K + RS+ T+ L E+C+ + R V+ +A +ISVE Y +T+ +LL+ MV+ V D++* P Subject 5951 SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV*HMWP 6277
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 6924 to 7685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
255.8 bits(552) | 0.0 | 114/254(45%) | 0/254(0%) | Plus/Plus |
Query 1214 NSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFRGI* 1975 N A T NS ++N + RG L+DEVY++H+G L + A E + +GD+NQIPF NREK+F M + P + + YT+ SYRCP DVCYLLS M + CYP V + +D+ +RS+ PI + + DV+L TQ EK+++ R + PV T+HEAQGKTF V L R KKADDS+ PH LVG+SRHTRS VY +S+L DKVG+ SD S ++VSD +L FRG+* Subject 6924 NEARTANSWIINPMKRGSSVLGLIDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHTRSFVYMTYNSRLSDKVGSLCSDVSDKNVSDVVLQGLQRFDRFRGV* 7685
Range 2: 6453 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 55/145(38%) | 0/145(0%) | Plus/Plus |
Query 758 KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKR 1192 K P +S PG + ++ ++ + DL YVF + F +G+D++ + D VCDD++ FHDA+NL + +AR ++G++F S + K N+PPGGGKTT L D F+K + TANVGS+EDIN + KR Subject 6453 KFPKSYLDSTPGLREHSMLNKNLYVVSESVSTIYDLDYVFSVSRNRFIRGRDINVLCTNNDKFLVCDDLVPFHDALNLKAVISLARTSLIGKNFSSIKMKYVNSPPGGGKTTRLCDTFMKRKDGVVIATANVGSAEDINKEIAKR 6887
Range 3: 5694 to 5894 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 31/67(46%) | 0/67(0%) | Plus/Plus |
Query 14 WPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGG 214 W L++IL + ++ CLVQ+Y G +P H+D+E CY D+ +LTVNL GKA FS+KC GG Subject 5694 WFEGLDEILRKTEGDLSYNQCLVQRYPEGTMIPLHSDNEACYEPDHKVLTVNLTGKALFSVKCNVGG 5894
Range 4: 5907 to 6008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 19/34(56%) | 0/34(0%) | Plus/Plus |
Query 233 VASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR 334 + + ++F+M GFQRTH HSV S RISLTFR Subject 5907 LGNDEWFVMIQGFQRTHKHSVISRSPQRISLTFR 6008
Range 5: 6342 to 6428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 12/29(41%) | 0/29(0%) | Plus/Plus |
Query 647 EDAVVEYLKYLAIGIERTYRALLMARNIA 733 E A +EY+ YLA + YR+L A A Subject 6342 EAASIEYILYLAYRVYNLYRSLSAAATYA 6428
Range 6: 6150 to 6290 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 11/47(23%) | 0/47(0%) | Plus/Plus |
Query 455 TPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMAL 595 TP+ GKA SE ST + + + +W+ +P + + Subject 6150 TPEPSGKANSEIIAASAANFSTLKVMQSYNALSPLKWMYDPDPALCI 6290
Range 7: 7343 to 7678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 44/112(39%) | 0/112(0%) | Minus/Minus |
Query 1633 PRKQPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS 1968 PRK+ S T + S +PTLS EL T +RVCL+ PT G ESSAFF T NVFP AS V TG L S FS V K TS Subject 7343 PRKRSKRCKPCKTTSLTFLSETSEHRLPTLSERRELYVIYTKDRVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS 7678
Range 8: 5705 to 5893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 26/63(41%) | 0/63(0%) | Minus/Minus |
Query 25 PPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR 213 PP LH EK AFP RLTVK S * +S S G P Y T+ W + + ISS+ Subject 5705 PPTLHFTEKSAFPVRLTVKTL*SGS*QASLSLCKGIIVPSGYR*TRHWLYDRSPSVFLSISSK 5893
Range 9: 6758 to 6889 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 20/44(45%) | 0/44(0%) | Minus/Minus |
Query 1063 SLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGGAL 1194 +LF ++ MSS PT AV + N S N+VV PPPGG L Subject 6758 ALFAISLLMSSAEPTFAVAMTTPSLRFMNVSHNLVVFPPPGGEL 6889
Range 1: 4707 to 5399 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.4 bits(383) | 0.0 | 88/231(38%) | 0/231(0%) | Plus/Plus |
Query 1205 EGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYI 1897 EG+ A T++SRV+N + G V +DE +++H G L++ GA E +GD QIPFINR + F V K V+ + SYRCP DVC +LS + CYP V G RS+S + I + DV N DV++ TQ EK + + + + TVHE QGKT V + R K A+DS+FT H +V LSRHT Y ++S +L D +G I Subject 4707 EGVRYARTIDSRVMNSLRAGKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHTVGARYYSISKRLFDGIGREI 5399
Range 2: 3396 to 3530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 24/45(53%) | 0/45(0%) | Plus/Plus |
Query 65 FDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIK 199 F+ LVQ+Y +GG V +HADDE CY D+ I+T+N G+A FSI+ Subject 3396 FNTALVQRYTLGGYVSWHADDEPCYSHDDSIVTINFNGQAVFSIQ 3530
Range 3: 4494 to 4679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 24/62(39%) | 0/62(0%) | Plus/Plus |
Query 989 LIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDIN 1174 L +K+ + E F S + PPGGGKTT ++ F +P T +TAN+ SS DIN Subject 4494 LANCMKLGKFYDFEERFSSSVVVLEDTPPGGGKTTNMLTRFRSNPYRTCILTANLESSLDIN 4679
Range 4: 3378 to 3539 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 18/54(33%) | 0/54(0%) | Minus/Minus |
Query 47 LPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLN 208 +P L+R+ CLP EID + +I +A L+I V + + + LH + V+ + +N Subject 3378 VPTLDRKYCLPIEIDSDNTIIM*VAGLIIRVPRHVTPQRIPLHQSCVEVSETVN 3539
Range 5: 4574 to 4690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 17/39(44%) | 0/39(0%) | Minus/Minus |
Query 1069 FTAIFMSSELPTLAVMVAVLLGDLTNSSTNIVVLPPPGG 1185 F+ + MS AV + V G L N +VVLPPPGG Subject 4574 FSCLLMSRLDSKFAVKIHVR*GLLLNLVNMLVVLPPPGG 4690
Grapevine leafroll-associated virus 1, complete genome
Range 1: 6164 to 6814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.9 bits(491) | 0.0 | 99/217(46%) | 0/217(0%) | Plus/Plus |
Query 758 KVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVFIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGLNSATTVNSRVVNFIVRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF 1408 K P VYE+LPG VY + ++ ++ +DG + DL YVF+ G F G++++AV++ D + VCDD+LVFHDA+NL G +++A+ +VGE K+ N+PPGGGKTT LVDE+ TAN GS+ DIN A++ R+ E A T NS +VN R L+DEVYM+H+G+ QL V A G E + +GD NQIPFINREK F Subject 6164 KFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVNSRPRPNSHVGLIDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF 6814
Range 2: 5387 to 5716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 49/110(45%) | 0/110(0%) | Plus/Plus |
Query 5 SSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR 334 S GW + L+++ +K +DHCL+QKY+ G + FHADDE+CY S ++TVNL G+A F ++ K G+++ + GD F+M G QR HSV S+DEGR+S+T R Subject 5387 SQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR 5716
Range 3: 7076 to 7387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 48/104(46%) | 0/104(0%) | Plus/Plus |
Query 1655 QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGCFR 1966 ++++ K + K V+T HEAQGKT+ DVVL R KKADD +F+++PHI+V LSRHTRS+ YA LSSK+ D + I VSD LL FR Subject 7076 EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHTRSMKYAVLSSKMSDTISKLIDGTYAGKVSDVLLQQLQRNDRFR 7387
Range 4: 6845 to 7087 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 41/81(51%) | 0/81(0%) | Plus/Plus |
Query 1439 KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR 1681 +E + YT SYRCP DVCY+LSSMT K YP V D +RS K PI T +D ADVYL MTQ EK++M+R Subject 6845 EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR 7087
Range 5: 5867 to 6157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 22/97(23%) | 0/97(0%) | Plus/Plus |
Query 464 SGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV 754 S S + R+ +ST E + K W+ ++PV+ ++ + + +KT +E +E++ YLA + L AR++ T + V Subject 5867 SSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV 6157
Range 6: 6541 to 6924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 49/128(38%) | 0/128(0%) | Minus/Minus |
Query 1135 LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIPLTIKFTTLELTVVALLRPSKFGSLFFTAIFMSSELPTLAVMV 1518 ++VI+DN * TS GHLY++ VY+ S + + + N FSL +NGI*F+SP S P+A T + + P C +YTSS + T E V A S F SL A +S+ LP AV + Subject 6541 ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSSISPTCEFGRGRELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAI 6924
Range 7: 7120 to 7302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 32/61(52%) | 0/61(0%) | Minus/Minus |
Query 1699 LSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSF 1881 +S EL A RVCLDK T+I G SSAFF L NTTS V PCASC V T F Subject 7120 VSDILELSTAYFMLRVCLDKATTI*GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLF 7302
Range 8: 6247 to 6438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 25/64(39%) | 0/64(0%) | Minus/Minus |
Query 841 SPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMNTYGRSLTRKPS 1032 SPT A + P K +AS TS SS T+ S TAS P K+P TY +S PS Subject 6247 SPTNALLANLTHPRKFIAS*NTSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPS 6438
Range 9: 5455 to 5649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 26/65(40%) | 0/65(0%) | Minus/Minus |
Query 73 PQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQ 267 P I K SP + P K A P + TV D *H SSSA N P LYFC KQ Subject 5455 PGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 5649
Range 10: 6475 to 6513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 11/13(85%) | 0/13(0%) | Minus/Minus |
Query 1069 SSTNIVVLPPPGG 1107 SST VVLPPPGG Subject 6475 SSTRRVVLPPPGG 6513
Range 11: 6692 to 6814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 17/41(41%) | 0/41(0%) | Minus/Minus |
Query 1286 KHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLI 1408 K L PV +WYLI +S ++ F + *L +LM H+H I Subject 6692 KRLFPVDKWYLILISVRDNFFHSHRYHC*LKHSLMQHIHFI 6814
Range 12: 7133 to 7423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 33/97(34%) | 0/97(0%) | Minus/Minus |
Query 1712 SKVGPKFIRSYTSKATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHH 2002 S G S SKA + ++Q+V + R N D I L AQ + A + Q+N MRL E +I LL+ QY+IT +L FM H Subject 7133 SSCGAAEKHSIDSKAIIPLQLLQQNVTHFSSVRTINQLRDSIRHLRAQHRVFHAASMP*QSNYNMRLPREDRIICLLQSYQYNITIRLALRFMRR*H 7423
Nucleotide Sequence (1742 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1162.2 | 6811.7 | 28% | 0 | 42% | NC_004667 | |
232.5 | 490.6 | 23% | 2.548e-94 | 32% | NC_022072 | |
77.6 | 139.1 | 10% | 3.945e-13 | 26% | NC_005065 | |
99.1 | 226.3 | 14% | 1.298e-19 | 28% | NC_016509 | |
92.7 | 142.3 | 8% | 1.107e-17 | 33% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 15148 to 16887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1162.2 bits(2530) | 0.0 | 536/580(92%) | 0/580(0%) | Minus/Plus |
Query 2 *SGYLRRAVFTDYGSSTDKRKATQTRSFESRESNTTRYGEHDSGHDTTFRTLLYCKEYKRQRWV*GGDRIRSKEGLLELFGSKGSYIRREIRRVSNQHCAILYEVFYSHHHYATYREENSASVHCPS*ARRPEEVHSVLLRLRTTG*QILPGGRVEG*RNGLRYSD*IS*FKA*RFGDV*HLRKHLII*RWNSDQF*LQFAVIPA*TLVV*K**LMXXXXXXXXTIVW*SHFETLTLDSPL*KSIRRIQRLY*VLINCFPRFLIRKVR**VTM*DRVSGFTTSFRKCVKISTRSARYNVPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*TI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVFL*WCLWIRRCES*VYFVRGESRIRVHRFLETSLRR*RRRWKHTTALTNLISRLKHHGPIVYYRADPFRLVQ**RDSPVHLD 1741 *SGYLR AVF D GSSTDKRK TQTRSFE RESNTTRYGE+DSGHDTTFRTLLYCKEYKRQR V*GGDRIRSKE LL+LFGSKGSYIRREIR VSNQHCAIL+EVF SHH+Y+TYREENSASV+CPS*ARRPEEVHSVLLRLRTTG*QILPGGRVEG*RNGLRYSD*IS*FKA*RFGDV*HLRKHLII*RWNSDQF*LQFAVIPA*TLVV*K**LMTYTTT YS *S FET TLDS L*K+ RRIQR Y*VLINCFPR LIRKVR**VTM*DRVSGFT SFRKCVKISTRSARYN PVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY* I*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQV L*W LWIRRCES*VYFV GESRI V RFLE SLRR* RRWK TTA TNLIS LKHHGPIVYY ADPFRLVQ**RDS +H D Subject 15148 *SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QILPGGRVEG*RNGLRYSD*IS*FKA*RFGDV*HLRKHLII*RWNSDQF*LQFAVIPA*TLVV*K**LMTYTTTIYSITAR*SRFETPTLDSLL*KNTRRIQRSY*VLINCFPRSLIRKVR**VTM*DRVSGFTISFRKCVKISTRSARYNAPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD 16887
Range 2: 15147 to 16349 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
868.9 bits(1890) | 0.0 | 387/401(97%) | 0/401(0%) | Minus/Plus |
Query 540 MKRISTTSGIYRLRKLYR*TQGYADSFFRKPGVKHHEIWGT**WP*YNFSYSTLL*RI*ASKMGIGWRPN*VKRRST*VIRK*GKLY*EGNTTRLQPTLCDPL*GIXXXXXXXXXXXRKFSQRTLP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQWLAL*RLNQLI*GVKVRRRITS*KAFDYLKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNCVVKSFRDTDTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y 1742 MKRIST SGI R RKLYR*TQ YADSFFRK GVKHHEIWG **WP*YNFSYSTLL*RI*ASK GIGWRPN*VKR ST*VIRK*GKLY*EGNT RLQPTLCDP *GILLTP L YL*RRKFSQR LP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQWLAL*RLNQLI*GVKVRRRITS*KAFDYLKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNC VKSFRDTDTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y Subject 15147 MKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQWLAL*RLNQLI*GVKVRRRITS*KAFDYLKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDNCAVKSFRDTDTGFTVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y 16349
Range 3: 15149 to 16276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
808.9 bits(1759) | 0.0 | 358/376(95%) | 0/376(0%) | Minus/Plus |
Query 613 EADIYDERYLPITEALQINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI*LSKDGIQTSFNYSSP*SRRKHW*FESDSL*LTLRQHIRQLCGKVISRH*HWIHRYERVFDEFSVYTKSL*TVFRGF**GR*DDK*RCRIEFQGLQHLFANV*RYQRDQRDTTCRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIERFEVGREQQGEI*GERHTRYLRFIV*LSRV*MK 1740 EADIYDERYLPITEALQINARLRRLVLSK GSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI*LSKDGIQTSFNYSSP*SRRKHW*FESDSL*LTLRQ+IR L GKV+SRH HWIH YER+ DEFSV+TKSL*TVFRG **GR*DDK*RCRIEFQGLQ+LFANV*RYQRDQRDTT RLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK Subject 15149 EADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI*LSKDGIQTSFNYSSP*SRRKHW*FESDSL*LTLRQYIR*LRGKVVSRHRHWIHCYERILDEFSVHTKSL*TVFRGL**GR*DDK*RCRIEFQGLQYLFANV*RYQRDQRDTTRRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK 16276
Range 4: 15915 to 16886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
666.8 bits(1449) | 0.0 | 305/324(94%) | 0/324(0%) | Plus/Minus |
Query 3 SRCTGLSRHYCTRRKGSAR**TIGP*CFNLEMRLVSAVVCFHLLLYLRRLVSRNLCTLILDSPLTKYT*LSQRRIHKHHYKNTCLSFFLSGNYL*LISLLPTLKQXXXXXXXXXXXNFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIVQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGTLYLADLVDIFTHLRKDVVNPETRSYIVTYHLTFLIKNRGKQF 974 S+C LSRHYCTRRKGSA+**TIGP*CFN EMRLV AVV FHLL+YLR+L SRNL T ILDSP TKYT*LSQRRIH HHY NTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQI+QYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTG LYLADLVDIFTHLRKD+VNPETRSYIVTYHLTFLIK+RGKQF Subject 15915 SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGALYLADLVDIFTHLRKDIVNPETRSYIVTYHLTFLIKDRGKQF 16886
Range 5: 16325 to 16888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
407.0 bits(882) | 0.0 | 177/188(94%) | 0/188(0%) | Minus/Plus |
Query 1 TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIRDNFRLRKRRGKYFYSGVCGSDVAKVRYILSGENRGLGYTDSLKLACVGREGGGNILQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILI 564 TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSI+DNFRLRKRRGKY+YSG CGSDVAKV+YILSGENRGLG DSLKL CVGR+GGGN+LQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LI Subject 16325 TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLI 16888
Range 6: 16389 to 16880 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.3 bits(684) | 0.0 | 148/164(90%) | 0/164(0%) | Minus/Plus |
Query 9 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLEIISA*EKGEASIFIVVFVDPTLRKLGIFCQGRIED*GTQIP*N*PA*VEKEVETYYSTY*SHL*VKASWTYRLLSCRSFPPCTIMT*QPCT 500 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQL+IISA*EKGEASI IVV VDPTLRKL IFC GRIED G IP*+* A*V+KEVETYYSTY*SHL VKASWTYRLL CRSFPP TIMT*Q T Subject 16389 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFT 16880
Range 7: 15148 to 15465 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(478) | 0.0 | 101/106(95%) | 0/106(0%) | Plus/Minus |
Query 1424 KYLIKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIMFPISRGV*LPAFERTSLRSLAFICRASVIGKYRSS*ISAS 1741 KYL+KDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATI+FPISRGV*LP FERTSLRSLAFICRASVIGKYRSS*ISAS Subject 15148 KYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISAS 15465
Range 8: 15576 to 15875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 92/100(92%) | 0/100(0%) | Plus/Minus |
Query 1014 FHNGESSVSVSK*LYHTIVEYXXXXXXISYHFQTTSVYAGITANCN*NWSEFHL*IIKCFLRCYTSPNLYALN*LI*SL*RKPLR*PSTRPPGNICYPVV 1313 FHN ESSV VSK LY ++EY+VVV*VISYHFQTTSVYAGITANCN*NWSEFHL*IIKCFLRCYTSPNLYALN*LI*SL*RKPLR*PSTRPPGNICYPVV Subject 15576 FHNSESSVGVSKRLYRAVIEYIVVV*VISYHFQTTSVYAGITANCN*NWSEFHL*IIKCFLRCYTSPNLYALN*LI*SL*RKPLR*PSTRPPGNICYPVV 15875
Range 9: 15149 to 16174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
657.7 bits(1429) | 0.0 | 324/342(95%) | 0/342(0%) | Plus/Minus |
Query 715 NIPHHALWSXXXXXXXXXXXXVKTSKNISVSACPSPKYVSR*PARCXXXXXXXXXHICEKML*TLKXXXXXXXXXXXXXXKTAENSL*GLSINAEFVEYSFITVNPVSVSRNDFTTQLSNMLS*CKS*AITFKLPVFTPGSRRTVIKTGLNSIFR*SNAF*DVIRLRTFTP*IS*FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GSVRWLNFLLYK*RNGGVSKIPHKGSHSVGWRRVVFPS*YSFPYFRITQVDLLLT*FGLHPIPIFDAYILYSRVEYEKLYHGHYHVPHISWCLTPGFRKNESA*PCVYL*SFRNR*IPLVVDIRF 1740 NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEK+L*TLKLDPTSLLIISPSLLKTAENSL*GLS+NAEFVEYSFITVNPVSVSRNDFT QLSN+LS*CKS*AITFKLPVFTPGSRRTVIKTGLNSIFR*SNAF*DVIRLRTFTP*IS*FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GS RWLNFLLYK* N GVSKIPH+GSHSVGWRR VFPS*YSFPYFRIT VD LLT*FGLHPIP+FDAYILYSRVEYEKLYHGHYH+PHISWCLTP FRKNESA* CVYL*SFR R IPL+VDIRF Subject 15149 NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEKIL*TLKLDPTSLLIISPSLLKTAENSL*GLSMNAEFVEYSFITVNPVSVSRNDFTAQLSNILS*CKS*AITFKLPVFTPGSRRTVIKTGLNSIFR*SNAF*DVIRLRTFTP*IS*FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRF 16174
Range 10: 16235 to 16570 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
256.7 bits(554) | 0.0 | 112/112(100%) | 0/112(0%) | Plus/Minus |
Query 319 GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V 654 GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V Subject 16235 GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V 16570
Range 11: 16651 to 16887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 68/79(86%) | 0/79(0%) | Plus/Minus |
Query 2 IKMYRAVTSLLYKAERICTIINDRSMML*PRDEISKCCSMFPPPSLPTQASFKESVYPNPRFSPDKIYLTFATSDPQTP 238 IK+ AVTSLLY+AERICTIINDRSMML*PRDEIS+CCS FPPP LPTQ SFKES +PNPRFSPDKIYLTFATSDPQ+P Subject 16651 IKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQSP 16887
Range 12: 15508 to 16104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.9 bits(838) | 0.0 | 186/199(93%) | 0/199(0%) | Plus/Minus |
Query 785 HQKIYQCQPARLLNMFLGNRHVVSR*SR*YLYTFAKRCCKP*NSILHRYLSSHLPY*KPRKTVYKDLV*TLNSSNTLS*R*IQCQCLEMTLPHNCRICCRSVSHKLSLSNYQCLRRDHGEL*LKLV*IPSLDNQMLSKMLYVSEPLRLKXXXXXXXXXXXXXXFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAVYAG 1381 HQKIYQCQPARLLNMFLGNR VVSR*SR*YLYTFAKR CKP*NSILHRYLSSHLPY*+PRKTVYKDLV*TLNSS+ LS*+*IQC+CLE TLP + RI CRSVSHKLSLSNYQCLRRDHGEL*LKLV*IPSLDNQMLSKMLYVSEPLRLKLADLIAIAQAIALAFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAV+AG Subject 15508 HQKIYQCQPARLLNMFLGNRRVVSR*SR*YLYTFAKRYCKP*NSILHRYLSSHLPY*RPRKTVYKDLV*TLNSSSILS*Q*IQCRCLETTLPRSYRIYCRSVSHKLSLSNYQCLRRDHGEL*LKLV*IPSLDNQMLSKMLYVSEPLRLKLADLIAIAQAIALAFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAVHAG 16104
Range 13: 16607 to 16888 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 77/94(82%) | 0/94(0%) | Plus/Minus |
Query 1 DQDVQGCHVIIVQGGKDLHDNKR*VHDALT*R*D**VL*YVSTSFSTYAG*FQGICVP*SSILP*QNIPNFRNVGSTNTTIKILASPFS*AEII 282 +Q V+ CHVIIV+GGKDLH+NKR*VHDALT R*D**VL*YVSTS STYA * QGI P SSILP QNI NFRNVGST TTI ILASPFS*AEII Subject 16607 NQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII 16888
Range 14: 15147 to 15365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 67/73(92%) | 0/73(0%) | Plus/Minus |
Query 1524 FDLIRSPPYTHL*RLYSLQ*SRVRKVVSWPLSCSPYLVVFDSRLSKERVCVALRLSVELP*SVNTARRRYPLH 1742 FDLIRSPPYT L*RLYSLQ*SRVRKVVSWPLS SPYLVVFDSRLSKERVCV LRLSVELP S NTA RRYPLH Subject 15147 FDLIRSPPYTRL*RLYSLQ*SRVRKVVSWPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH 15365
Range 15: 16378 to 16602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 75/75(100%) | 0/75(0%) | Plus/Minus |
Query 287 IDFXXXXXXXXXXXXXIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL 511 IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL Subject 16378 IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL 16602
Range 16: 16165 to 16326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 53/54(98%) | 0/54(0%) | Plus/Minus |
Query 563 VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNRSISH 724 VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSN SISH Subject 16165 VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH 16326
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 16048 to 16593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.5 bits(501) | 0.0 | 96/182(53%) | 0/182(0%) | Minus/Plus |
Query 1195 EADIYDERYLPITEALQINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNIL 1740 E+DIYDER++ EAL++N+RL L+ S + D GN +V +IQLF+LYSTVK+ ++ Y++ L K+V LS+ VR AIL G D S TN VR++MRY+ +T ++LL+ K+QPAYTA AKHGVPKRF P+CFDFA+LD+RYY DV+KANA+A A AI+ A + +G E YN+L Subject 16048 ESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIRLAKEKGEGKEQYNLL 16593
Range 2: 16752 to 17162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 56/137(41%) | 0/137(0%) | Minus/Plus |
Query 615 TVMKEYSTNSAFILSPYKLFSAVFNKEGEMISNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK* 1025 T+ + YSTNSAFIL+PYK+F AVF+K G+ I+ DV S FRVY++ + + + I +I+ +R YL Y G + I V+ ++ V +++ +H W G+ DL WE++ KG+D+LD +L +YPGFK* Subject 16752 TLSEGYSTNSAFILNPYKIFGAVFDKSGKAIATDVASVFRVYDLHNYVVEKIGDIALYKRVTYLCEYDSLGGSVETITVKVVKDDGTIVDVVIDNNHKCWAGLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK* 17162
Range 3: 16599 to 16712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 12/38(32%) | 0/38(0%) | Minus/Plus |
Query 1065 LKMEFRPVLITVRRDPGVNTGSLKVIAYDLHYDNIFDN 1178 ++MEF+PV I V + V + D+ +FDN Subject 16599 VRMEFKPVTIKVSKVGSGEIVPYNVESIDMVSYALFDN 16712
Range 1: 8772 to 9062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 33/97(34%) | 0/97(0%) | Minus/Plus |
Query 1219 SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRK 1509 +Y+EV I + N VR+F+R+ + I L+I I+P +AK+G+P++F PYCFDF++++ + D + AN +A +A+KS++ +R+ Subject 8772 NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVNTVTHGVDAVFANLLAKLVALKSSSHKRQ 9062
Range 2: 13578 to 14036 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 40/153(26%) | 0/153(0%) | Minus/Plus |
Query 1234 QINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSA 1692 Q++ + +L GS + + +V + Q+ V+ T N D + K+ +Y VRE+I N +R FMR + + + L I+P ++K GVP F PY D + D + A MA IA+K A Subject 13578 QLSPSITKLCNEVWGSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPDAGKDGLSAVLAKMMASTIALKQA 14036
Grapevine leafroll-associated virus 1, complete genome
Range 1: 15096 to 15524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 50/143(35%) | 0/143(0%) | Minus/Plus |
Query 1192 MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILE 1620 + + MIQ + +ST N+ + +V+ L +K + ++E+R I + N VR +MR+F+ TTI+L+ + P Y +A+HGV +F PY FD+ +L Y D A A+A A AI AN RR G YN E Subject 15096 LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCILLPSYNRRDDKVAAALARAQAIALANKRRAGKTLYNFSE 15524
Range 2: 13685 to 13951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 29/89(33%) | 0/89(0%) | Minus/Plus |
Query 1246 LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIA 1512 L+Y +V+ A++ G ++ N +R + R F+ T + L++ K++P +HGVPKRF PY FDF + D ++A +A A Subject 13685 LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESA 13951
Range 3: 16398 to 16829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 41/144(28%) | 0/144(0%) | Minus/Plus |
Query 1294 DERYLPITEALQINARLRRLVLSKAGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 1725 + YL A +I L RL L+ D ++V +IQ V Y T + K V K V L + VR I+ TN +R +MR+++ TI L+ ++P AK G+ FD+ LLD R+ Subject 16398 ESTYLSKDVAKRITLALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF 16829
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 15317 to 15748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 47/144(33%) | 0/144(0%) | Minus/Plus |
Query 1186 IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMACAIAIKSANLRRKGSETYNILESI 1617 ++A+IQ V YSTV++ + D V + + Y++ + I + +N +R +MR+++ TTI+L+ I+P Y A HGV K + PYCFDF LD+RY D A +A +AIK+ + S N+ +I Subject 15317 LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNKLRYNQSSNDENLHNTI 15748
Range 2: 14031 to 14225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 24/65(37%) | 0/65(0%) | Minus/Plus |
Query 1258 NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAMA 1452 N VR + R F+ + I+ KI+P LA+HGV KRF YC D YY ++A +A Subject 14031 NPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLA 14225
Nucleotide Sequence (1214 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
837.3 | 4414.4 | 35% | 0 | 72% | NC_004667 | |
324.6 | 908.3 | 30% | 6.951e-123 | 29% | NC_022072 | |
162.8 | 435.7 | 37% | 2.613e-72 | 23% | NC_016509 | |
140.8 | 410.2 | 19% | 1.804e-54 | 39% | NC_029783 | |
85.8 | 216.1 | 10% | 1.312e-24 | 41% | NC_011702 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 5358 to 6110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
582.5 bits(1265) | 0.0 | 243/251(97%) | 0/251(0%) | Minus/Plus |
Query 1 KSRGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGL 753 KS GKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSG+DLIFHSTQDGLRVRDLPYV IAEKGIF KGKDVDAVVALGDNLFVCDDILVFHDAINL+GALKVARCGMVGESFKSFEYKCYNAPPGGGKTT LVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGL Subject 5358 KSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHSTQDGLRVRDLPYVLIAEKGIFTKGKDVDAVVALGDNLFVCDDILVFHDAINLIGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTTLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLEGL 6110
Range 2: 4908 to 5303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
318.1 bits(688) | 0.0 | 128/132(97%) | 0/132(0%) | Minus/Plus |
Query 808 GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDERSP 1203 GWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSV+SIDEGRISLTFRATRRVFGVGRMLQLAGGVSDE+SP Subject 4908 GWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSP 5303
Range 3: 4898 to 6109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
837.3 bits(1821) | 0.0 | 366/404(91%) | 0/404(0%) | Plus/Minus |
Query 2 RPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTSIVVLPPPGGAL*HLYSNDLNDSPTIPHRATFSAPIKLIASWKTNISSHTNRLSPKATTASTSLPLIKIPFSAMNTYGKSLTRKPSCVE*KMRSEPDL*TWKPGSDS*T*LGTFKTPSAVVTAMFLAISNALYVLSIPIARYFKYSTTASSEVPVFTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHQIEYVDXXXXXXXXXXDRALPLDFCATVPVVPWFCGCWFGTLGDLSSDTPPANCNILPTPKTRRVALNVKLMRPSSIELTECKCVL*KPQGMRK*SPEATFMTITLPPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSKTRGHPHKT 1213 RPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSST++VVLPPPGGAL*HLYS DLNDSPT+PHRATFSAPIKL+ASWKT+ISSHTNRLSPKATTASTSLPL+KIPFSAM+TYG+SLTRKPSCVE*KMRS PDL*T KPGSDS*T*LGTF+TPSAVVTA+FLAISNALYVLS+PIARYFKYSTTASSEVPV TTSNVIGV*SG RAITGLSALSHSHFLT*SCSH IEYVDLPLTSLPLPSDRALP DF V V PW CGCWFGT GD SSDTPPANCNILPTPKTRRVALNVKLMRPSS+E TECKCVL*KPQG+RK*SPEATFMT+TLPPFLHL+EK AFPTRLTV++GLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISS+ RGHP +T Subject 4898 RPSKFGSLFFTAIFMSSELPTLAVMVAVLLGDLTNSSTNVVVLPPPGGAL*HLYSKDLNDSPTMPHRATFSAPIKLMASWKTSISSHTNRLSPKATTASTSLPLVKIPFSAMSTYGRSLTRKPSCVE*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDET 6109
Range 4: 4899 to 6110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
751.6 bits(1634) | 0.0 | 325/404(80%) | 0/404(0%) | Plus/Minus |
Query 1 ETFQIRISLLHRHIYVLRTSHISRNGGRAIG*LDKFVH*HRRLTATWGSIIAFVFERLK*FTHHTTSSDFQCTHQINSIMENQYIITYEQIVAQSYYRVDIFALDKNTFLSYEYIR*VPHTQAVLC*MKNEI*A*LVNVEAR**FINLIRHFQNTFSSSDGNVPSHKQRPVCSLNTYSQILQVLHDGIFRGPGFYHFKRHWGVVGFESHHWIISPEPLTLLDVILFTPDRVRRPPLDFPTTSLRQSLAP*LLCDRSGSTLVLRLLVWNTW*PLIRHAAG*LQHPAYAEDTPSRPKRQTDAPFVNRAH*MQVRPLKTARHEKIVTRSHVYDHNLTTLPTLN*EVSLPHEIDCQDGVIRWIALLIIGVEWYASTHLVLLH*AMVKDARVLNCRQDIF*DTGPPP*N 1212 ETFQIRISLLHRHIYVLRTSHISRNGG AIG*L++FVH* RRLTATWGSIIA +FE LK F HH SSDFQCT+QIN I+ENQYI+ YEQIVAQSY+RVDIFAL K+TF SYEY+R*V HTQAVLC*MKNEI A LVNV+AR**FINLIR+FQNTF SDGN+ SHKQRPVC LN YSQILQVLHDGIFRGPGF HFK HWGVV F+SHHWIISPEPLTL +VILF P RV RPPLDFPTTSLR SLAP CD SGSTL L LLVWNTW* LIRHAAG*LQHPAY +D PS P+RQTDAPFV+ +*MQVRPLKTARH+KIVTRS+VYDH+LTTLP L+ EV LPHEID QD VI WIALL+I VEWYASTHLVLLH* +V+DA VLNCR DI * T PP *N Subject 4899 ETFQIRISLLHRHIYVLRTSHISRNGGCAIG*LNEFVH*RRRLTATWGSIIALIFEGLKRFAHHAASSDFQCTYQINGIVENQYIVAYEQIVAQSYHRVDIFALGKDTFFSYEYVR*VSHTQAVLC*MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGSTLALWLLVWNTW*LLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTRPP**N 6110
Range 5: 4901 to 6073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
647.1 bits(1406) | 0.0 | 308/391(79%) | 0/391(0%) | Minus/Plus |
Query 38 FMGVAPCLRRYLDGN*VPERL*PLLSAEVQDGWRRTIPRR**GVLSIG*PHPDSQSRGEG*LLN*V*EGW*GYGHKRGFG*LFSHALRFSKDALAFSELY*RRAHQFDV*GDSACLXXXXXXXXXXXXVG*EVTKCSKPAAAKPRYYRNGRTKVKGQGSV*GKW*GSQGEVDVLDLV*TRLRQEV*VAQG**SSDGSQTRLHPNDV*SGKNRDL*RCRRGVLEVSGYRY*ENIQGVAYG*EHCRHYC*RCFESA*SSL*ITTGLPRLQVRLRSHFSFNTRRLACEGLTVCIHS*ERYFYQGQRCRRGSSFGRQSVRM**YIGFP*CY*FDGCTESRSMWYGG*II*VVRIQML*CSPRWR*DDDASGRICQVTQ*HGHHYG*CGKF*GHKY 1210 F+ VA C R YL+GN*VP+RL PL SAEVQDGWRRTIPR * GVLSI *P+ D QSRGEG LL+*V EGW*G+GHKR FG*LFS+ALRFSKDALAFS+L+ RRAHQFDV G+SA L RQDVAVSRRRVG*EVT+CSKPA +PR Y+N TK+ GQGS+*GKW*GSQGEVD+LD+V TRLR EV*VAQG**SSDGS T LHPND+*SG NRDL*RCRRGVLEVSGYR+*E+IQGVAYG*++CRHY RC ES *SSL*ITTGL RLQV RSHFSFNTRRLACE TV HS*+RY YQGQRCRRG SFGRQSVRM Y GFP C+*FD CTESRSM +GG I+*V+RI +L*CSPRWR*DDD SGRI VTQ*H HHYG*CGKF*GHKY Subject 4901 FIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHTKIGGQGSI*GKW*GSQGEVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRCSEST*SSL*ITTGLSRLQVGHRSHFSFNTRRLACERPTVRTHS*KRYLYQGQRCRRGGSFGRQSVRMRRYTGFPRCH*FDRCTESRSMRHGGRIV*VLRI*VL*CSPRWR*DDDVSGRIR*VTQ*HSHHYG*CGKF*GHKY 6073
Range 6: 5140 to 6072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
546.3 bits(1186) | 0.0 | 251/311(81%) | 0/311(0%) | Plus/Minus |
Query 39 YLCPQNFPH*P*WWPCYWVT*QIRPLASSSYRHLGEHYSICIRTT*MIHPPYHIERLSVHPSN**HHGKPIYHHIRTDCRPKLLPRRHLCP**KYLSQL*IHTVSPSHASRLVLNEK*DLSLTCKRGSPVVIHKLD*ALSKHLQQ**RQCS*P*ATPCMFSQYL*PDTSSTPRRHLQRSRFLPLQTSLGCSRV*EPSLDYQP*ATHTS*RNLVHXXXXXXXXP*LPYHFPQTEPCPLTFVRPFR*YLGFAAAGLEHLVTSHPTRRRLTATSCLRRRHAESP*TSN*CALRQ*SSLNASASFENRKA*ENSH 971 YLCPQNFPH*P*WW CYWVT*+IRPL SSSYRHLGEHYS IR T* I PP IERLSVH SN* H GKP+Y IRTDCRPKL PRRHLCP *+YL QL*+ TV SHASRLVLNEK*DL TCKR SPVVIHKLD* LS+HL++**RQ *P*ATPCM SQ L*PDTSSTPRRHLQRSRF PLQ SLGCS+V EPSLDYQP*ATHTS*RNLV T SS STSP*LPYHFPQ EPCP V F *+LG AGLEHLVTSHPTRRRLTATSCL +R AE P*TSN*CALR+ S LNASASFENRKA*ENSH Subject 5140 YLCPQNFPH*P*WWLCYWVT*RIRPLTSSSYRHLGEHYSTYIRRT*TIRPPCRIERLSVHLSN*WHRGKPVYRRIRTDCRPKLPPRRHLCPW*RYLFQL*VRTVGLSHASRLVLNEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSH 6072
Range 7: 4900 to 5103 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 49/68(72%) | 0/68(0%) | Plus/Minus |
Query 1008 SYT*LRS*PSPRD*LSGWGYPMDSTPHHRRGMVRLHPSCTSALSNGQRRSGT*LPSRYLLRHGATPIK 1211 S T* RS PSPRD* S GY MDSTP H+RGMVRLHPSCTSAL++G+RR GT*LP RY L H AT +K Subject 4900 SCT*SRSLPSPRD*PSR*GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMK 5103
Range 8: 5287 to 6060 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
437.3 bits(948) | 0.0 | 208/258(81%) | 0/258(0%) | Minus/Plus |
Query 51 RMRGHQVFQTSSRKTKVLPERSHKSQGARLCLREXXXXXXXXXXXXXXVNKITSRSVSGSGLIIQ*WLSNPTTPQ*RLKW*KPGPLKMPSWST*SIWL*VLREHTGRCLWLGTLPSLLLKVF*KCLIKFMNHYRASTFTSQAQISFFIQHKTACV*GTYRMYS*LRKVFLSRAKMSTR**LWATICSYVMIYWFSMMLLI*WVH*KSLDVVWWVNHLSRSNTNAIMLPQVAVRRRC*WTNLSSHPIARPPLRLMWEVL 824 RMR HQVFQTS+ + KVLPE+SH+++GARL LREVVGKSRGGR TR G NKIT SVSGSGLIIQ*WL N TTPQ* LKW KPGPLKMPSWST*SIWL* LR HTGRCLWL LPSL KVF*K LIKFMNHYRA TFTS+AQISFFIQHKTACV* TYR YS*L+KV L RAKMSTR *LWATICSY IYWFS M LI* VH*KSLD WW N LS SN +AIMLPQVAVRRR *WTN SHPIA+PPLRLMWEVL Subject 5287 RMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETYRTYS*LKKVSLPRAKMSTRW*LWATICSYATIYWFSTMPLI**VH*KSLDAAWWANRLSPSNISAIMLPQVAVRRRR*WTNSLSHPIAQPPLRLMWEVL 6060
Range 9: 4900 to 5241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.9 bits(406) | 0.0 | 89/114(78%) | 0/114(0%) | Minus/Plus |
Query 870 FYGGGPVS*KIS*RQLSTRASLTIA*CRSTRWVEAYHSTPMMRSAIHRITPS*QSISWGRLTSQLSVGRVVRLWS*TWLRVTIFSCLAVFKGRTCIQ*ALLTKGASV*RLGRLG 1211 F+ GG V *+IS*RQLST+AS T *CRSTRWVEAYHST M RSAIH+IT S*+SISWGR TS+LS GRVVR WS*T LRVTIF CLAVFKGRTCIQ* TKGASV*R G+LG Subject 4900 FHQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLG 5241
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 6434 to 7153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.6 bits(702) | 0.0 | 126/240(52%) | 0/240(0%) | Minus/Plus |
Query 22 KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKR 741 K SE + R + STY++W EQD+V KC+WL+AD+P++AL+P M FE V T T+EDA +EYLKY AIGIER Y A + IAV A+GVLK P Q YE LPG YK + ++H T+DGLR+ D+PYVF+ EKGIF KG+ + + + +CD +LVFHDA+N G LK+AR G+VG+ FKSF Y C NAPPGGGKTTM+V++F++ P +T +TAN+GS++DIN + K+ Subject 6434 KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYHPTEDGLRLCDIPYVFLMEKGIFCKGQSLCGGMHGDETALLCDSLLVFHDALNFCGCLKIARLGLVGKEFKSFNYTCVNAPPGGGKTTMMVEKFLEQPRTTTMVTANLGSADDINKKLDKK 7153
Range 2: 5948 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 60/110(55%) | 0/110(0%) | Minus/Plus |
Query 874 GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFRAT 1203 GWP VL++I+ Y FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F +C+ VAS D F+M GFQR + H+V S EGRISLTFR+T Subject 5948 GWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST 6277
Range 3: 6796 to 7137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 55/114(48%) | 0/114(0%) | Plus/Minus |
Query 38 IFMSSELPTLAVMVAVLLGDLTNSSTSIVVLPPPGGAL*HLYSNDLNDSPTIPHRATFSAPIKLIASWKTNISSHTNRLSPKATTASTSLPLIKIPFSAMNTYGKSLTRKPSCV 379 + MSS LP LAV + V+ G N ST IVV PPPGGAL + LN PT P A F P K ASW T+ SH + +S PL KIPFS NTYG S + KPS V Subject 6796 LLMSSALPKLAVTIVVVRGCSKNFSTIIVVFPPPGGALTQV*LKLLNSLPTKPSLAIFKHPQKFKASWNTSKESHNSAVSSPCMPPHNDCPLQKIPFSIKNTYGISHSLKPSSV 7137
Range 4: 6490 to 6768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 50/93(54%) | 0/93(0%) | Plus/Minus |
Query 407 L*TWKPGSDS*T*LGTFKTPSAVVTAMFLAISNALYVLSIPIARYFKYSTTASSEVPVFTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHQ 685 L* KPG+ S* G F TP A +TA+ L NALY LSIPIA YF+YS ASS V V T S I G RA G SA + SH +T SCS Q Subject 6490 L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCSVQ 6768
Range 5: 6001 to 6276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 46/92(50%) | 0/92(0%) | Plus/Minus |
Query 875 VALNVKLMRPSSIELTECKCVL*KPQGMRK*SPEATFMTITLPPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQWSK 1150 V LNVKL+ PS E T C +L*KP + S EAT LH + K A P TV +GLS G*H S SAWN PP Y TKQWSK Subject 6001 VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK 6276
Range 6: 6446 to 7129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 65/228(29%) | 0/228(0%) | Plus/Minus |
Query 46 VLRTSHISRNGGRAIG*LDKFVH*HRRLTATWGSIIAFVFERLK*FTHHTTSSDFQCTHQINSIMENQYIITYEQIVAQSYYRVDIFALDKNTFLSYEYIR*VPHTQAVLC*MKNEI*A*LVNVEAR**FINLIRHFQNTFSSSDGNVPSHKQRPVCSLNTYSQILQVLHDGIFRGPGFYHFKRHWGVVGFESHHWIISPEPLTLLDVILFTPDRVRRPPLDFPTTSL 729 V+ T+ +SR L + + HR + + I V + L+ T+ SSDF +I +ME Q I ++ + + ++T L E+IR + QA+L + N + LV+ +AR ++L R Q+TF S GN+ +R V LN +LQVL I P + K H +S + IIS +P+ L +L PD + P P L Subject 6446 VVGTTQVSRYHRSRTRLLQELFNHHRSFSTSGWGIDTSVVKALEFLTNQAQSSDF*APTEIQGVMEYQQRIA*QRRLVTMHAPTQRLPFAEDTLLHQEHIRYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL 7129
Range 7: 5942 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 40/112(36%) | 0/112(0%) | Plus/Minus |
Query 874 SRPKRQTDAPFVNRAH*MQVRPLKTARHEKIVTRSHVYDHNLTTLPTLN*EVSLPHEIDCQDGVIRWIALLIIGVEWYASTHLVLLH*AMVKDARVLNCRQDIF*DTGPPP* 1209 SRP+ QTD+ H M V PLK H K + RSH T+ TL E+ + + V+ +A II VE Y +T+ +LL+ AMV+ +V D+ * P P* Subject 5942 SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV*HMWPTP* 6277
Grapevine leafroll-associated virus 1, complete genome
Range 1: 6164 to 6613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 65/150(43%) | 0/150(0%) | Minus/Plus |
Query 7 KVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKRDPNLE 456 K P VYE+LPG VY + ++ ++ +DG + DL YVF+ G F+ G++++AV++ D + VCDD+LVFHDA+NL G +++A+ +VGE K+ N+PPGGGKTT LVDE+ TAN GS+ DIN A++ R+ E Subject 6164 KFPLAVYENLPGLRVYDANFKVVANAPEDGTTIFDLEYVFLVSTGTFVPGRNLEAVLSRQDAVLVCDDLLVFHDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKE 6613
Range 2: 5393 to 5716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 48/108(44%) | 0/108(0%) | Minus/Plus |
Query 880 GWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFR 1203 GW + L+++ +K +DHCL+QKY+ G + FHADDE+CY S ++TVNL G+A F ++ K G+++ + GD F+M G QR HSV S+DEGR+S+T R Subject 5393 GWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR 5716
Range 3: 5900 to 6157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 20/86(23%) | 0/86(0%) | Minus/Plus |
Query 460 REVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV 717 R+ +ST E + K W+ ++PV+ ++ + + +KT +E +E++ YLA + L AR++ T + V Subject 5900 RQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV 6157
Range 4: 6247 to 6438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 26/64(41%) | 0/64(0%) | Plus/Minus |
Query 182 SPTIPHRATFSAPIKLIASWKTNISSHTNRLSPKATTASTSLPLIKIPFSAMNTYGKSLTRKPS 373 SPT A + P K IAS T+ SS T+ S TAS P K+P TY KS PS Subject 6247 SPTNALLANLTHPRKFIAS*NTSRSSQTSTASCLDNTASRFRPGTKVPVDTKKTYSKSKIVVPS 6438
Range 5: 5455 to 5649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 25/65(38%) | 0/65(0%) | Plus/Minus |
Query 947 PQGMRK*SPEATFMTITLPPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQ 1141 P + K SP + P K A P + TV D *H SSSA N P LYFC KQ Subject 5455 PGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 5649
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 6453 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 56/145(39%) | 0/145(0%) | Minus/Plus |
Query 22 KVPNQVYESLPGFHVYKSGSDLIFHSTQDGLRVRDLPYVFIAEKGIFIKGKDVDAVVALGDNLFVCDDILVFHDAINLMGALKVARCGMVGESFKSFEYKCYNAPPGGGKTTMLVDEFVKSPNSTATITANVGSSEDINMAVKKR 456 K P +S PG + + ++ ++ + DL YVF + FI+G+D++ + D VCDD++ FHDA+NL + +AR ++G++F S + K N+PPGGGKTT L D F+K + TANVGS+EDIN + KR Subject 6453 KFPKSYLDSTPGLREHSMLNKNLYVVSESVSTIYDLDYVFSVSRNRFIRGRDINVLCTNNDKFLVCDDLVPFHDALNLKAVISLARTSLIGKNFSSIKMKYVNSPPGGGKTTRLCDTFMKRKDGVVIATANVGSAEDINKEIAKR 6887
Range 2: 5694 to 5894 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 31/67(46%) | 0/67(0%) | Minus/Plus |
Query 1000 WPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGG 1200 W L++IL + ++ CLVQ+Y G +P H+D+E CY D+ +LTVNL GKA FS+KC GG Subject 5694 WFEGLDEILRKTEGDLSYNQCLVQRYPEGTMIPLHSDNEACYEPDHKVLTVNLTGKALFSVKCNVGG 5894
Range 3: 5907 to 6008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 19/34(56%) | 0/34(0%) | Minus/Plus |
Query 880 VASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFR 981 + + ++F+M GFQRTH HSV S RISLTFR Subject 5907 LGNDEWFVMIQGFQRTHKHSVISRSPQRISLTFR 6008
Range 4: 6342 to 6428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 12/29(41%) | 0/29(0%) | Minus/Plus |
Query 481 EDAVVEYLKYLAIGIERTYRALLMARNIA 567 E A +EY+ YLA + YR+L A A Subject 6342 EAASIEYILYLAYRVYNLYRSLSAAATYA 6428
Range 5: 5705 to 5893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 26/63(41%) | 0/63(0%) | Plus/Minus |
Query 1001 PPFLHLIEKLAFPTRLTVRMGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSK 1189 PP LH EK AFP RLTV+ S * +S S G P Y T+ W + + ISSK Subject 5705 PPTLHFTEKSAFPVRLTVKTL*SGS*QASLSLCKGIIVPSGYR*TRHWLYDRSPSVFLSISSK 5893
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 5203 to 5355 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 31/51(61%) | 0/51(0%) | Minus/Plus |
Query 1003 SVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKG 1155 S+FDHCL+QKY G G+PFH D+E YP NPILT++L G+ FSIKC G Subject 5203 SMFDHCLIQKYNRGAGIPFHKDNEPVYPIGNPILTIHLSGEGMFSIKCGTG 5355
Range 2: 5386 to 5448 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 15/21(71%) | 0/21(0%) | Minus/Plus |
Query 904 YFLMPCGFQRTHLHSVSSIDE 966 +FLMPCGFQ+THLHSV+ E Subject 5386 WFLMPCGFQKTHLHSVTCSSE 5448
Range 3: 5449 to 5484 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 8/12(67%) | 0/12(0%) | Minus/Plus |
Query 865 RISLTFRATRRV 900 R+SLTFRAT+++ Subject 5449 RVSLTFRATQQL 5484
Nucleotide Sequence (627 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
411.3 | 1084.4 | 35% | 4.031e-114 | 37% | NC_004667 | |
259.1 | 444.7 | 15% | 2.745e-68 | 31% | NC_022072 | |
181.1 | 181.1 | 27% | 8.017e-45 | 44% | NC_016509 | |
118.2 | 118.2 | 20% | 6.935e-26 | 40% | NC_010178 | |
127.3 | 127.3 | 20% | 1.249e-28 | 41% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10977 to 11603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
411.3 bits(896) | 0.0 | 170/209(81%) | 0/209(0%) | Plus/Plus |
Query 1 SIECVWRWSTGLENFYPDPVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEPKEMDIAVFKLSTDGTVSVIVNGEEVVNEYLVPGTTNILESLVYRSGREEVEAKAIPEYLKT 627 S V + TGL+NFYPDPV+AVMTGGSSAL KVR DVANLPQ+SKV+FDS+DFRCSVACGAKVYCD L+G+S LRLVDTLTNTLTDEV QPVVIFPKGSPIPCSYTHRY V G +VVYGIFEGENNRAFLNEPTFRG+SKRRG+P E D+A F LSTDGTVSVIVNGEEV NEYLVPGTTN+L+SLVY+SGRE++EAKAIPEYL T Subject 10977 SARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTT 11603
Range 2: 11357 to 11602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 63/82(77%) | 0/82(0%) | Minus/Minus |
Query 381 VFRYSGIAFASTSSLPDL*TKDSNMLVVPGTRYSFTTSSPLTITLTVPSVDNLNTAISISFGSPLRLDIPRNVGSFRKALLF 626 V +YSGIA AS SSLPDL*T +S+ VVPGTRYSF TSSPLTIT TVPSV+ LN A S+S GSPLR D PRNVGSFRKALLF Subject 11357 VVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLF 11602
Range 3: 10988 to 11188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 44/67(66%) | 0/67(0%) | Minus/Minus |
Query 12 PESMSQYTFAPQATEHRKSELSNITFDTCGKFATSSLTFDSALEPPVMTATTGSG*KFSKPVLHRQT 212 P +SQ T APQATEH KS LSN T D CGK ATS LT AL+PPV+TA TGSG*K S+PVL+ T Subject 10988 PAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTST 11188
Range 4: 11249 to 11302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 15/18(83%) | 0/18(0%) | Minus/Minus |
Query 273 VYEHGIGLPLGKITTG*K 326 VYE GIGLP GKITTG*+ Subject 11249 VYEQGIGLPFGKITTG*R 11302
Range 5: 11007 to 11603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 74/199(37%) | 0/199(0%) | Minus/Minus |
Query 31 CL*VLRYCFRFYFFPTRSVD*RF*YVSRPWH*ILVHDFLSVDDHTYRPICR*LKHCDIHLLRLTSTFGHTPERRFIQKGSVVLAFKDAVDDFIPTHVVPVSVRTRYRTTFGKNHHRLKIRHFIS*SVS*CVH*AQIATTGKYVAIYLRPTGH*TPKIRTIEYNL*HLWQIRYVLSYFR*RARTPRHDGHHRIWIKIFQT 627 C VL YC F R +D YV P + I + FL+++D+ +R + +K + L ++ TF + PERR I K SV+L FK V TH V +S+ T Y TTF +N+HRLK + + * + * VH +Q A T + +A+ L PT H T KI T+E++ +L QI ++ * P H+G++R+W+K+ +T Subject 11007 CGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDLN*ST*PPSHNGNNRVWVKVVKT 11603
Range 6: 11252 to 11593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 46/114(40%) | 0/114(0%) | Plus/Plus |
Query 276 SAGGDFSQR*SDTVFVHSQVQREWG*SRLRHL*RREQQSLSE*TDVPGYVQT*R*AEGDGYRSV*VIYRWDGKCDRQRRGSRERVSSARDD*HIRIFSLQIW*GRSRSESNTGV 617 SAGG+F +R*S+T+F++S + W +R++*R E QS S+* DVPG ++T* D +V* ++ +G C R GS+E +S RD+ L IW R R NT V Subject 11252 SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWERRFRG*GNTRV 11593
Range 7: 11096 to 11233 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 19/46(41%) | 0/46(0%) | Plus/Plus |
Query 120 FATSVKGYIR*FGFSVFSGLWGEGILRHTFR**QSAPSGHTN*HSN 257 FA + +R + F +F GLWG G+LR+ R**++ GH N ++N Subject 11096 FAADI*SRVRQYRF*MFGGLWG*GLLRYFGR**RTETGGHFNEYAN 11233
Range 8: 11095 to 11277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 24/61(39%) | 0/61(0%) | Plus/Plus |
Query 119 ICHKCQRLYSIVRIFGVQWPVGRRYIATYFPVVAICA*WTH*LTL*LMKCLIFSRW*FFPK 301 IC + + S V I V+W VG R+ A + V+A WT * * + +FSRW*F K Subject 11095 ICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRK 11277
Range 9: 11338 to 11409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 15/24(62%) | 0/24(0%) | Plus/Plus |
Query 362 TASLKARTTEPF*MNRRSGVCPNV 433 T LK R TE F*M+RRSG NV Subject 11338 TVYLKGRITELF*MSRRSGAYRNV 11409
Range 10: 11134 to 11322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 26/63(41%) | 0/63(0%) | Minus/Minus |
Query 158 HSRCTCECTNTVSDYLWEKSPPAENQTLHQLEC*LVCPLGADCYYRKVCRNIPSPHRPLNTEN 346 H C E N V DYL K PPAE+ L L CP + YY R+ P PH+P N N Subject 11134 HPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*N 11322
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11966 to 12562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.1 bits(562) | 0.0 | 106/199(53%) | 0/199(0%) | Plus/Plus |
Query 22 WSTGLENFYPDPVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEPKEMDIAVFKLSTDGTVSVIVNGEEVVNEYLVPGTTNILESLVYRSGREEVEAKAIPEY 618 +S +E F PD VAV+TGGSSAL +VR+ +A LP V+ V++D DFRCSVACGAKVYCD L G +LRLVDTLTN+L+DEV +F+P ++FPKG+PIPCSYT Y+VS VVYG++EGE NR++LNE TFR + K D + LS DGT+SV +NG+ VNE+ +N+++S Y +GRE+ + + + EY Subject 11966 FSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGREDTQKEGVGEY 12562
Range 2: 11975 to 12472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 51/166(31%) | 0/166(0%) | Minus/Minus |
Query 31 LVHDFLSVDDHTYRPICR*LKHCDIHLLRLTSTFGHTPERRFIQKGSVVLAFKDAVDDFIPTHVVPVSVRTRYRTTFGKNHHRLKIRHFIS*SVS*CVH*AQIATTGKYVAIYLRPTGH*TPKIRTIEYNL*HLWQIRYVLSYFR*RARTPRHDGHHRIWIKIFQT 528 LV+ ++D RPI R*+ I L + TPER F++ ++ L+F ++ D TH V VR RY GKN RL++ H ++ ++S ++ ++ T +A+Y T + T K+ + + + W+ Y+LSYF * ART + IW + F + Subject 11975 LVNSKFAIDSDAQRPIER*VVLNRIRSLAARTMSIFTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASYAWKRCYLLSYFH*GARTSG*NSDGPIW*ESFHS 12472
Range 3: 11992 to 12156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 32/55(58%) | 0/55(0%) | Minus/Minus |
Query 48 PESMSQYTFAPQATEHRKSELSNITFDTCGKFATSSLTFDSALEPPVMTATTGSG 212 P SQYTFAP ATEH KS S T T G A LT ALEPPV TAT SG Subject 11992 PPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSG 12156
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10783 to 11295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.1 bits(391) | 0.0 | 76/171(44%) | 0/171(0%) | Plus/Plus |
Query 22 WSTGLENFYPDPVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEPKEMDIAVFKLSTDGTVSVIVNGEEVVNEYL 534 ++ G P+V V+TGGS AL V++ + LP VS+ +DS FR SVA GAK+Y DIL+G S+LRL+DT++ TL+DE+S F +VIFPKG PIP Y + +SG + YGI EGE+NR +LNE F+G R ++ D +++S DG + + V+G ++ N L Subject 10783 FAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL 11295
Pineapple mealybug wilt-associated virus 1, complete genome
Range 1: 9210 to 9590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.2 bits(253) | 0.0 | 51/127(40%) | 0/127(0%) | Plus/Plus |
Query 64 AVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMSKRRGEP 444 AV+ GG+S L V + VA+LP ++KVIFD +R +VA G +Y SGSS RL+D+++ +L+DE + + V IFPKG PIP + R+ + + + +GE++ A +NE TF G K P Subject 9210 AVLIGGTSYLPGVIDSVASLPMITKVIFDRKTYRAAVALGGALYAQTFSGSSRYRLIDSISGSLSDEFKNLKAVCIFPKGHPIPSTVESRFTMPSTDTGVVLMQGESSMANMNEMTFSGSVKTSTYP 9590
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 11231 to 11602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.3 bits(273) | 0.0 | 51/124(41%) | 0/124(0%) | Plus/Plus |
Query 55 PVVAVMTGGSSALSKVREDVANLPQVSKVIFDSSDFRCSVACGAKVYCDILSGSSNLRLVDTLTNTLTDEVSDFQPVVIFPKGSPIPCSYTHRYNVSGDEVVYGIFEGENNRAFLNEPTFRGMS 426 P V+TGGS+AL + ++ V+ V+++ FR SVA GAK+Y D+L+ S+L L+D+L+ TL+D+++ F+ ++FPKG+ IP ++ Y V EV YG++EGE N +LN+ TF+G++ Subject 11231 PTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA 11602
Nucleotide Sequence (293 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
234.3 | 1164.8 | 33% | 2.506e-61 | 85% | NC_004667 | |
140.8 | 204.7 | 27% | 3.449e-33 | 50% | NC_022072 | |
95.9 | 95.9 | 33% | 1.136e-19 | 42% | NC_029783 | |
71.6 | 71.6 | 32% | 2.322e-12 | 39% | NC_005065 | |
69.8 | 177.3 | 25% | 1.944e-17 | 44% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 6204 to 6494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 97/97(100%) | 0/97(0%) | Plus/Plus |
Query 3 QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 293 QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP Subject 6204 QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 6494
Range 2: 6204 to 6494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 84/97(87%) | 0/97(0%) | Minus/Minus |
Query 3 WPFGQ*SHYRLILTTNDLFRVTLFRSPYGH*GQQVANV*RTSV*FRSVYNTFLLWNKYSTIHPKHLLPVYEWYLIYVSKKEAFRRASREDA*L**AL 293 WPFGQ S+Y +LT NDLFRVTLFRSPYGH*GQQVAN+*RT V FRSVYN FLLWNK STIHPKHLLPVYEWYLIYVSKKEAFRRA EDA*L**AL Subject 6204 WPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**AL 6494
Range 3: 6202 to 6492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 82/97(85%) | 0/97(0%) | Minus/Minus |
Query 1 AFWTVISLPAYPYH*RPFQGNTFPFPLRSLRTTSSKRLTDICMI*KCIQHFPSLEQIQHNPS*TPSPCL*MVSDLCLQKRGLQTRQSRRRLIVVSLD 291 AFWT I L PY *RPFQGNTFPFPLRSLRTTSSK LTD C I*KCIQ FPSLEQ QHNPS*TPSPCL*MVSDLCLQKRGL TR+ RRRL+VVSLD Subject 6202 AFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLD 6492
Range 4: 6202 to 6492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 84/97(87%) | 0/97(0%) | Plus/Plus |
Query 1 IKAYYN*ASSRLARLKASFLET*IRYHS*TGRRCLGWIVLYLFQRRKVLYTLLNHTDVR*TFATCCPQ*P*GERKSVTLKRSLVVRISR**DHCPKG 291 IKAYYN*ASS+ AR KASFLET*IRYHS*TGRRCLGWIVL+LFQRRK LYTLLN T VR* FATCCPQ*P*GERKSVTLKRSL VR ++**D CPKG Subject 6202 IKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKG 6492
Range 5: 6203 to 6442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 78/80(98%) | 0/80(0%) | Minus/Minus |
Query 2 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTNTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPNCSKP* 241 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGT TAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTP+CSKP* Subject 6203 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP* 6442
Range 6: 6203 to 6493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 82/97(85%) | 0/97(0%) | Plus/Plus |
Query 2 SRLTTIRRLRDWRV*RPLFWRHKSDTIHKQGEGV*DGLCCICSKEGKCCIHF*IIQMSXXXXXXXXXNDRKGNGKVLP*KGR*W*G*AGSEITVQKA 292 SRLTT RRLR+ RV RPLFWRHKSDTIHKQGEGV*DGLCC CSKEGK CIHF*I+Q+SVR LLLVVLNDRKGNGKVLP*KGR* *G S+I VQKA Subject 6203 SRLTTTRRLRNRRVGRPLFWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKA 6493
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 7268 to 7558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 55/97(57%) | 0/97(0%) | Plus/Plus |
Query 3 QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 293 +GLLQ G FA+GA EG+F+GD++QIPFINREK+FR + P+K + YT ++YRCPLDVC++LS++ EKCY VVSG PVVRS KRP Subject 7268 EGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRP 7558
Range 2: 7270 to 7497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 38/76(50%) | 0/76(0%) | Minus/Minus |
Query 5 *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTNTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPNCSKP 232 *HFS ++ DN TSNG Y VY F G N FS FM GI* SP K PS AP AK PNCSKP Subject 7270 *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKP 7497
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 7017 to 7307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 41/97(42%) | 0/97(0%) | Plus/Plus |
Query 3 QGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 293 +G L + A E + +GD+NQIPF NREK+F M + P + + YT+ SYRCP DVCYLLS M + CYP V + +D+ +RS+ P Subject 7017 KGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIP 7307
Range 1: 4812 to 5090 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Plus |
Query 6 GLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLS 284 G L++ GA E +GD QIPFINR + F V K V+ + SYRCP DVC +LS + CYP V G RS+S Subject 4812 GELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVS 5090
Grapevine leafroll-associated virus 1, complete genome
Range 1: 6845 to 7003 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 26/53(49%) | 0/53(0%) | Plus/Plus |
Query 135 KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 293 +E + YT SYRCP DVCY+LSSMT K YP V D +RS K P Subject 6845 EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVP 7003
Range 2: 6713 to 6814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 20/34(59%) | 0/34(0%) | Plus/Plus |
Query 3 QGLLQLGVFATGASEGLFFGDINQIPFINREKVF 104 +G+ QL V A G E + +GD NQIPFINREK F Subject 6713 KGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF 6814
Range 3: 6715 to 6924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 31/70(44%) | 0/70(0%) | Minus/Minus |
Query 5 LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTNTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPNCSKP 214 ++VI+DN * TS GHLY++ VY+ S + + + N FSL +NGI*F+SP S P+A T N + P Subject 6715 ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIP 6924
Nucleotide Sequence (752 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
501.0 | 2671.6 | 26% | 5.286e-141 | 82% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 16998 to 17747 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
501.0 bits(1087) | 0.0 | 216/250(86%) | 0/250(0%) | Plus/Minus |
Query 1 PRNITYSTKTKNEQKD*PNYFIFLTFLYFKFIEGFLPITGC*TFSFSTYAN*SIQIVTNKHSD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKQTISTANKHAQVSNVNCNPFKDLTTAEQHNISTALRNKASRSTS*RSHSLKYTHYH*LDNSFVVCLLPQLRSVRSELALYVCQSIDHLSIQDIFYFPSFHDTLRITPST**LPEHLLNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA 750 PRN TYSTK K+EQKD*PNYFIFLTF+YFKFIEGFLPITGC*TFSFSTYAN*SI IVTNKH+D*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQK TISTANKHAQ+S+ NCNPF++LT AEQHNI LRNKASR+TS*RS +L+ T+YH*LD+SFVVCLL QLR VR ELA +C IDHLSIQDIF FPSFHDTLRITPST** PEHL NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA Subject 16998 PRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA 17747
Range 2: 16997 to 17497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.8 bits(720) | 0.0 | 143/167(86%) | 0/167(0%) | Minus/Plus |
Query 251 LHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKKYLGYLSDQCSGKRIMLTQTGLTAVEEADILRTNYLVSGNGYISNCGIARMLILTLCCGAL*KCCVVQPLSNL*TGYS*RYLLAHVC*RC*LSAFVEGDEALRKTHQSSGT 751 LHRTILIDSIDSAFAYDQVGCLVGIARGLL+HSEDVLEVIKSMELFEVCRGKRGSK+YLGYLSDQC+ K +MLTQ GL AVE ADILRTN+LVSGN + N GIARML+LTLCCGAL*KC VVQP+SN TGY+ RYL AHVC*RC*L AFVEGDEALRKTHQSSGT Subject 16997 LHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAHVC*RC*LLAFVEGDEALRKTHQSSGT 17497
Range 3: 17531 to 17746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 65/72(90%) | 0/72(0%) | Minus/Plus |
Query 2 VGCIYRRNVNRYVY*LLFVCSNWHM*KKRRFNNQ*WVKILQ*I*NKEK*EK*NN*ASLFVRFSFL*NRLYFE 217 VGCIYRRNVNRYVY*LLF+CSN HM*K+RRFNNQ*WVKILQ*I*NK+K*EK*NN*ASLFVR S L*NR YFE Subject 17531 VGCIYRRNVNRYVY*LLFICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFE 17746
Range 4: 16998 to 17639 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
437.3 bits(948) | 0.0 | 185/214(86%) | 0/214(0%) | Minus/Plus |
Query 109 CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLNIQKMFWKSSSRWSYSKCVVERGEVKNILDT*VINALANV*C*LRPD*PQLRKQTYYERII*SVVMGIFQTVGSLGC*S*RFVAERCRNVVLFSRCQIFKRVTVNVTYLRMFVSGANCLLL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIAMFISYYLYALIGICRKREGLTTSNG 750 CIEQFSLTV*TPPSLMTKWGVWWA*LEVCL+I+KMFW+SSSRWSYSKCVVERGE K+ILDT*VINAL N *C*LRPD PQL++QTYYERII*SVV+ Q GSLGC S*RFVAE +NV+LFS+CQIFKRVT+ TYLRMFVSGANC LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLI MFISYYLYALI ICRK EGLTTSNG Subject 16998 CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVISSLQISGSLGCCS*RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLTTSNG 17639
Range 5: 16997 to 17650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
413.9 bits(897) | 0.0 | 187/218(86%) | 0/218(0%) | Plus/Minus |
Query 98 KDFYPLLVVKPSLFLHMPIRAYK**LINIAINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKSRQLAPLTNMRK*VTLTVTRLKI*QRLNNTTFLQRSATKRQDQHPSDPTV*NIPITTD*IIRS*YVCFLNCGQSGLS*HYTFARALIT*VSKIFFTSPLSTTHFE*LHRLDDFQNIF*MFKQTSSYAHQTPHLVISEGGVYTVNENCSMQ 751 KDFYPLLVVKPS FLHM IRAYK**LINI INVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS QLAPLTNMRK*V + VTRLKI* LNN TFL SATKRQ+QHPSDP + ITTD*+IRS*YVC NCGQSGLS*H+ F ALIT*VSKI F SPLSTTHFE*LHRLDD QNIF M KQTSSYAHQTPHLVISEGGVYTVNENCSMQ Subject 16997 KDFYPLLVVKPSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQ 17650
Range 6: 17699 to 17746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 15/16(94%) | 0/16(0%) | Plus/Minus |
Query 2 LEI*PILQKRKTNKKT 49 LEI PILQKRKTNKKT Subject 17699 LEIKPILQKRKTNKKT 17746
Range 7: 17263 to 17649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.8 bits(541) | 0.0 | 114/129(88%) | 0/129(0%) | Plus/Minus |
Query 99 RIFTHYWLLNLLFFYICQLEHTNSN**T*RLTLRL*IHPTRHKRHFARRNSVPLL*WVFLSASSPSTKADN*HR*QTCASK*R*L*PV*RFDNG*TTQHFYSAPQQSVKINILAIPQFEIYPLPLTR*F 485 RIFTHYWLLNLL FYIC LEH NSN**T RLTLRL*IHPTRHKRHFARRNSVPLL*WVFLSASSPSTKA+N*HR*QTCA+K*R*L*PV*+FD G*TT HFYSAPQQSVK NILAIP+F LPLTR*F Subject 17263 RIFTHYWLLNLLLFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARRNSVPLL*WVFLSASSPSTKANN*HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*F 17649
Range 8: 16996 to 17211 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 67/72(93%) | 0/72(0%) | Plus/Minus |
Query 537 IIRLPEH*SLKYPRYFLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS 752 I+ L H*SLKYPRY LLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS Subject 16996 IMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS 17211
Range 9: 17695 to 17745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 14/17(82%) | 0/17(0%) | Plus/Minus |
Query 3 SKYNLFYKNEKRTKRLA 53 SK NLFYK+E+RTKRLA Subject 17695 SK*NLFYKSERRTKRLA 17745
Range 10: 16996 to 17298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 86/101(85%) | 0/101(0%) | Minus/Plus |
Query 450 AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFRRCSGSHQVDGVIRSVSWKEGK*KISWILK*SMLWQTYNANSDRTDRS*GSRHTTNELSSQW*WVYFK 752 AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF RCSG HQVDGVIRSVSWKEGK KISWILK*SM Q ++ANS RT RS* SRHTTNE SSQW* V K Subject 16996 AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDANSGRTGRS*RSRHTTNESSSQW**VLSK 17298
Range 11: 17338 to 17661 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.4 bits(383) | 0.0 | 97/108(90%) | 0/108(0%) | Minus/Plus |
Query 87 RSAVEMLCCSAVVKSLNGXXXXXXXXXXXXXXLIVCFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SLCLLVTICML*LAYVEKEKV*QPVMGKNPSINL 410 RS ++MLCCSA VK NGLQL+LL CACLLAVLIV FCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*S+CLLVTI ML*LAYVEKEKV*QPVMGKNPSINL Subject 17338 RSTIKMLCCSASVKFSNGLQLSLLICACLLAVLIVSFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEKEKV*QPVMGKNPSINL 17661
Nucleotide Sequence (409 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
295.2 | 1562.9 | 30% | 1.992e-79 | 87% | NC_004667 | |
54.7 | 54.7 | 11% | 5.186e-07 | 51% | NC_003602 | |
58.3 | 108.9 | 19% | 6.71e-16 | 49% | NC_022072 | |
57.4 | 57.4 | 9% | 7.713e-08 | 59% | NC_017859 | |
54.2 | 54.2 | 8% | 7.125e-07 | 61% | NC_001748 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 5100 to 5492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
295.2 bits(638) | 0.0 | 121/131(92%) | 0/131(0%) | Minus/Plus |
Query 1 RKGGKVMVMNVASGDYFLMPCGFQRTHLHSVSSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQRAQSQGVTRSITVRSGGKALSEGSGWEVKGRSTYSIWCEQDYVKKCEWLRADNPVMAL 393 RKGGKVMV+NVASGDYFLMPCGFQRTHLHSV+SIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQ+ QSQG TR+IT +SGGKALSEGSG EVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL Subject 5100 RKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMAL 5492
Range 2: 5096 to 5491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.0 bits(620) | 0.0 | 119/132(90%) | 0/132(0%) | Plus/Minus |
Query 2 RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSQPLPSDRALPPDLTVIDLVTP*LCARWFGTPGDFSSDTPPANCNILPTPNTRRVALNVKLIRPSSIELTECKCVL*KPQGIRK*SPEATFMTMTFPPFLH 397 RAITGLSALSHSHFLT*SCSHHIEYVDLPLTS PLPSDRALPPD VI LV P LC WFGTPGDFSSDTPPANCNILPTP TRRVALNVKL+RPSS+E TECKCVL*KPQGIRK*SPEATFMTMT PPFLH Subject 5096 RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLH 5491
Range 3: 5101 to 5490 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
257.2 bits(555) | 0.0 | 116/130(89%) | 0/130(0%) | Minus/Plus |
Query 3 GRVGRSWS*T*LRVTIFLCLAVFKGRTCIQ*ALSTKGVSV*RSGQLGACLV*AGCCS*PAACRMRNRQVFQTSVHRVKVLPDQSL*DRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WL 392 GRV RSWS*T*LRVTIFLCLAVFKGRTCIQ* STKG SV*RSGQLGA LV*AGCCS*PAACRMR+ QVFQTS HR KVLP+QS +RGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WL Subject 5101 GRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WL 5490
Range 4: 5127 to 5492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.5 bits(547) | 0.0 | 106/122(87%) | 0/122(0%) | Plus/Minus |
Query 1 KSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRSYSD*SGNTLTLCTLVWNTWRFLIRHAAG*LQHPAYTKHAPSCPERQTDTPFVDRAH*MQVRPLKTARHKKIVTRSYV 366 KSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPR + D SG+TL L LVWNTW LIRHAAG*LQHPAYTK APSCPERQTD PFVD +*MQVRPLKTARHKKIVTRSYV Subject 5127 KSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGSTLALWLLVWNTW*LLIRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYV 5492
Range 5: 5129 to 5491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.8 bits(541) | 0.0 | 110/121(91%) | 0/121(0%) | Minus/Plus |
Query 2 RSFG*LFSYALRFSKDALAFSELYRRRAYQFDVQGNSARVWCRQDVAVSRRRVG*EIARCSKPACTESRCYQINHCKIGGQGSI*GKWLGSQGEVDILDMVRTRLR*EV*VAQG**SSDGS 364 RSFG*LFSYALRFSKDALAFS+L+RRRA+QFDVQGNSAR+WCRQDVAVSRRRVG*E+ RCSKPA TE RCYQ NH KIGGQGSI*GKW GSQGEVDILDMVRTRLR*EV*VAQG**SSDGS Subject 5129 RSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHTKIGGQGSI*GKW*GSQGEVDILDMVRTRLR*EV*VAQG**SSDGS 5491
Range 6: 5128 to 5490 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.2 bits(472) | 0.0 | 110/121(91%) | 0/121(0%) | Plus/Minus |
Query 3 EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPNHFPQIEPCPPILQ*LIW*HLDSVHAGLEHLAISHPTRRRLTATSCLHQTRAELP*TSN*YXXXXXXXXXXXXXFENRKA*ENSHPKLR 365 EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LP HFPQIEPCPPIL *L W*HL SV AGLEHL SHPTRRRLTATSCLHQ RAELP*TSN* ALRR S LNASASFENRKA*ENSHPKLR Subject 5128 EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLR 5490
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Nucleotide Sequence (1057 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
603.2 | 3963.9 | 36% | 0 | 91% | NC_004667 | |
162.4 | 465.8 | 23% | 1.614e-59 | 39% | NC_022072 | |
73.0 | 267.1 | 16% | 5.172e-32 | 44% | NC_016509 | |
63.4 | 223.4 | 13% | 1.938e-18 | 44% | NC_009992 | |
74.4 | 314.2 | 15% | 2.068e-30 | 42% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 9674 to 10366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
507.8 bits(1102) | 0.0 | 222/231(96%) | 0/231(0%) | Minus/Plus |
Query 247 *VYFLSLVLSYMTLRQNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*SSC*AKVVS*FYIEVGVFVYGRF*TGNTVASSRFCLCDNSVAGSYVCRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHLQYNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED 939 *VY LSLVLSYMTLR NYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE* SC*AKVVS*FYIEVGVFVYG F*TGNTVASSRFCL DNS AGSYV RPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNH Q+NLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED Subject 9674 *VYLLSLVLSYMTLRPNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEVGVFVYG*F*TGNTVASSRFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED 10366
Range 2: 10415 to 10612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Plus |
Query 1 HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTD 198 HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTD Subject 10415 HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTD 10612
Range 3: 9556 to 9627 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 23/24(96%) | 0/24(0%) | Minus/Plus |
Query 986 YYVGYFGATPKVFPLCV*PLM*VS 1057 YYVGYFGATP+VFPLCV*PLM*VS Subject 9556 YYVGYFGATPEVFPLCV*PLM*VS 9627
Range 4: 9774 to 10610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
603.2 bits(1310) | 0.0 | 270/279(97%) | 0/279(0%) | Plus/Minus |
Query 3 RFVNNTSNRYTKTF*RLNNEASFKGVIVXXXXXXXXXXXXXXIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRKNQQQNYHKDKIDY*QQYCLFKIVHKQIRLLQYKITILPSLSTKIIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV 839 RFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDV FDVIPRHT PPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKA+C E GSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+RKNQQQNYH+DKIDY*QQYCLFKI+HKQIRLLQYKITILPSLSTK+IRVAPSPISLLRRTRSIPISRKNLFMSPLNLV Subject 9774 RFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVAFDVIPRHTCPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV 10610
Range 5: 9556 to 9630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 24/25(96%) | 0/25(0%) | Plus/Minus |
Query 983 QRNLH*RLHTKRKNLWRSAKITYVI 1057 QRNLH*RLHTKRKNLWRSAK+TYVI Subject 9556 QRNLH*RLHTKRKNLWRSAKVTYVI 9630
Range 6: 9693 to 9734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 13/14(93%) | 0/14(0%) | Plus/Minus |
Query 879 KIHNFDVASYTTTL 920 KIHN DVASYTTTL Subject 9693 KIHNLDVASYTTTL 9734
Range 7: 10001 to 10612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
401.5 bits(870) | 0.0 | 203/204(100%) | 0/204(0%) | Plus/Minus |
Query 1 VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVSGXXXXXXXXXXXXLSIFTVYVGFNFST*RSTLSLVTPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR 612 VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTP HLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR Subject 10001 VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTPAHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR 10612
Range 8: 9659 to 9949 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.0 bits(476) | 0.0 | 95/97(98%) | 0/97(0%) | Plus/Minus |
Query 664 ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIILT*RHIRQH*GKKINLDRRKE 954 ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFII T*RHIRQH*GKKINL+RRKE Subject 9659 ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIIWT*RHIRQH*GKKINLNRRKE 9949
Range 9: 9558 to 9626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 22/23(96%) | 0/23(0%) | Plus/Minus |
Query 987 ETYIKGYTQRGKTFGVAPK*PT* 1055 ETYIKGYTQRGKT GVAPK*PT* Subject 9558 ETYIKGYTQRGKTSGVAPK*PT* 9626
Range 10: 10017 to 10610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
400.6 bits(868) | 0.0 | 197/198(99%) | 0/198(0%) | Minus/Plus |
Query 3 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDXXXXXXXXXXXXGPDTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP 596 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRW GVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEP Subject 10017 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWAGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEP 10610
Range 11: 9690 to 9950 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.2 bits(435) | 0.0 | 86/87(99%) | 0/87(0%) | Minus/Plus |
Query 663 P*CCRI*RYVKIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA 923 P*CCRI*RYV+IMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA Subject 9690 P*CCRI*RYVQIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA 9950
Range 12: 9558 to 9623 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 20/22(91%) | 0/22(0%) | Minus/Plus |
Query 990 LRRLFWRYAKGFSSLCVAFNVG 1055 LRRL WRYA+GFSSLCVAFNVG Subject 9558 LRRLLWRYARGFSSLCVAFNVG 9623
Range 13: 9949 to 10353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
306.2 bits(662) | 0.0 | 128/135(95%) | 0/135(0%) | Plus/Minus |
Query 260 M*VLISRRNVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSKLY*RWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRQT*EPATELSQRQNRLLATVL 664 M*VLISRR+VRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKS+L *+WFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGR+T*EPA ELS+RQNRLLATVL Subject 9949 M*VLISRRSVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVL 10353
Range 14: 9697 to 9900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 66/68(97%) | 0/68(0%) | Plus/Minus |
Query 713 HDTTFAQHEDHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F*RSVIYDN 916 HDTTFAQHE HSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F RSVIYDN Subject 9697 HDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*FGRSVIYDN 9900
Range 15: 10414 to 10488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 25/25(100%) | 0/25(0%) | Plus/Minus |
Query 125 TYTFRTPVSRLSRINILRQRPSIRC 199 TYTFRTPVSRLSRINILRQRPSIRC Subject 10414 TYTFRTPVSRLSRINILRQRPSIRC 10488
Range 16: 10537 to 10611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 25/25(100%) | 0/25(0%) | Plus/Minus |
Query 2 SVR*QHL*PVYQDLLAPQQRSFV*R 76 SVR*QHL*PVYQDLLAPQQRSFV*R Subject 10537 SVR*QHL*PVYQDLLAPQQRSFV*R 10611
Range 17: 9557 to 9604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 15/16(94%) | 0/16(0%) | Plus/Minus |
Query 1009 HKEEKPLA*RQNNLRN 1056 HKEEKPLA*RQ+NLRN Subject 9557 HKEEKPLA*RQSNLRN 9604
Range 18: 9709 to 10197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
353.9 bits(766) | 0.0 | 156/163(96%) | 0/163(0%) | Minus/Plus |
Query 416 DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMIFVLSEGSIVILY*SRRICLWTILNRQYCC**SILSL**FCCWFLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPPSVQFAFPHLGSAVVLLWPVVFTLKPKF 904 DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRM FVLSEGSIVILY*SRRICLW ILNRQYCC**SILS **FCCWFLR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEP S Q AFPHLGSAVVLLWPVVFTLKPKF Subject 9709 DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGSAVVLLWPVVFTLKPKF 10197
Range 19: 10240 to 10485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 80/82(98%) | 0/82(0%) | Minus/Plus |
Query 128 RGKLIVTV*REGCMLTRKGG*V*RGITSNVTSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI 373 RGKLIVTV*REGCMLTRKGG V*RGITSN TSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI Subject 10240 RGKLIVTV*REGCMLTRKGGQV*RGITSNATSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI 10485
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11048 to 11335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 61/96(64%) | 0/96(0%) | Minus/Plus |
Query 246 LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 533 + M+VGIDFGTTFST+C+S SG GCT VAGS++VETQ+F+PE + Y IGK AGK YRDGV GRLY+NPKRWVGV N +++KLKP Y+V++ Subject 11048 IPMDVGIDFGTTFSTLCYSASGAGGCTRVAGSIFVETQVFVPEEGTRYYIGKVAGKLYRDGVVGRLYLNPKRWVGVNAINFSSFMKKLKPAYSVEL 11335
Range 2: 11381 to 11578 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 45/66(68%) | 0/66(0%) | Minus/Plus |
Query 3 DTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP 200 D L V D+ICLFLR LI E E T TVT+AVVTVPADYNSFKR F+V AL+GLGIPV+ ++NEP Subject 11381 DIKLSVTDIICLFLRGLIKEAESETGKTVTSAVVTVPADYNSFKRGFIVTALRGLGIPVKAIINEP 11578
Range 3: 11053 to 11274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 45/74(61%) | 0/74(0%) | Plus/Minus |
Query 307 TPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSI 528 TPTH G YNLP+TPSR FPA LPI ++ SG VST LPAT VQP PD E VL VVPKS+PTSI Subject 11053 TPTHRLGFRYNLPTTPSRYNFPATLPI*YLVPSSGTNTCVSTKMLPATLVQPPAPDAE*HRVLNVVPKSMPTSI 11274
Range 4: 11380 to 11580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 39/67(58%) | 0/67(0%) | Plus/Minus |
Query 1 VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVS 201 VGS LTGIPRP A T K L EL*SAGTVTTA VTV V LS S I +N+HI S T + +S Subject 11380 VGSFMMALTGIPRPRRAVTMKPLLNEL*SAGTVTTAEVTVFPVSLSASLINPRRNRHIISVTDSLIS 11580
Range 5: 11054 to 11332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Minus |
Query 249 LHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFH 527 LH VC F T V + PPFR+ +Q ++ I FP +FT VS+A FR K L F + T H TT+ R A T+ GS++Y + H Subject 11054 LHAVCWFQLFHETAKVYRVYADPPFRI*VQSPYDSIPIQFPGNFTYIVSSAFFRDKYLRFYKDATCHPGTTSCTRRRIA*STKCGSEVYAHVH 11332
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10198 to 10389 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 34/64(53%) | 0/64(0%) | Minus/Plus |
Query 3 LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP 194 L+RVVD++ LF++ ++LE E V+ V TVPA+YNSFKRSF+ AL+GLG P+R ++NEP Subject 10198 LVRVVDLVFLFVKGILLETEEAVGKAVSGVVCTVPAEYNSFKRSFLGVALEGLGKPLRALINEP 10389
Range 2: 10000 to 10149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 24/50(48%) | 0/50(0%) | Minus/Plus |
Query 246 TYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 395 TY IG A + G G LY+NPKRWVGV N + KL P Y VK+ Subject 10000 TYSIGHRAYSDFVAGKPGGLYINPKRWVGVDGYNFQAVKRKLNPEYEVKL 10149
Range 3: 9865 to 9915 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 15/17(88%) | 0/17(0%) | Minus/Plus |
Query 477 MEVGIDFGTTFSTICFS 527 MEVG+DFGTTFST CFS Subject 9865 MEVGLDFGTTFSTACFS 9915
Range 4: 9934 to 9987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 9/18(50%) | 0/18(0%) | Minus/Plus |
Query 411 SGCTPVAGSVYVETQIFI 464 SGC + S +V TQ+FI Subject 9934 SGCVTLVNSPFVPTQVFI 9987
Range 5: 10203 to 10391 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 28/63(44%) | 0/63(0%) | Plus/Minus |
Query 1 VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTL 189 VGS L G+P P A+ KLRL EL SAGTV T T + S SS + STTL Subject 10203 VGSFMRALNGLPNPSRATPKKLRLNELYSAGTVQTTPDTALPTASSVSSNIPFTKRKTKSTTL 10391
Plum bark necrosis and stem pitting-associated virus, complete genome
Range 1: 9379 to 9570 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 32/64(50%) | 0/64(0%) | Minus/Plus |
Query 3 LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP 194 ++ VVD+I L+++ L+ T+ V +A +VPADYNSFKRSFV A LGI VR V+NEP Subject 9379 VMPVVDLIYLYIKGLVQLTISQTNLQVGSASCSVPADYNSFKRSFVYTACSALGIGVRAVINEP 9570
Range 2: 9061 to 9126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 16/22(73%) | 0/22(0%) | Minus/Plus |
Query 462 MEVGIDFGTTFSTICFSPSGVS 527 ME+GIDFGTTFS++CFSP+ S Subject 9061 MELGIDFGTTFSSVCFSPANKS 9126
Range 3: 9238 to 9333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 14/32(44%) | 0/32(0%) | Minus/Plus |
Query 243 LYVNPKRWVGVTRDNVERYVEKLKPTYTVKID 338 +Y + KRWVG N + KLKP Y V +D Subject 9238 VYRDIKRWVGCNHINESEFRRKLKPEYIVVVD 9333
Range 4: 9387 to 9572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 32/62(52%) | 0/62(0%) | Plus/Minus |
Query 1 VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTT 186 VGSL T T +PR A TKLRL EL*SAGT+ A T V+ S K L K+I STT Subject 9387 VGSLMTARTPMPRALQAV*TKLRLNEL*SAGTLQEALPTCRFVWEIVSCTKPLIYKYIKSTT 9572
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 10625 to 10807 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 34/61(56%) | 0/61(0%) | Minus/Plus |
Query 3 VVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEP 185 + D+I LFL+ LI E E T V +VPA YNSFKRSF++ ALKGLG P+R +VNEP Subject 10625 ITDLIALFLKGLITEAETQTGVAVVGVTCSVPAKYNSFKRSFLMTALKGLGKPLRALVNEP 10807
Range 2: 10463 to 10564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 17/34(50%) | 0/34(0%) | Minus/Plus |
Query 246 EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 347 EG LYVNPKRW+G+ N +++KLKP + V + Subject 10463 EGLLYVNPKRWIGMNSRNKHIFMDKLKPQHEVLV 10564
Range 3: 10283 to 10333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 14/17(82%) | 0/17(0%) | Minus/Plus |
Query 477 MEVGIDFGTTFSTICFS 527 MEVGIDFGTTFST+C++ Subject 10283 MEVGIDFGTTFSTLCYN 10333
Range 4: 10358 to 10405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 8/16(50%) | 0/16(0%) | Minus/Plus |
Query 411 CTPVAGSVYVETQIFI 458 C +AGS+YV T+I + Subject 10358 CVRIAGSIYVPTEILV 10405
Range 5: 10630 to 10809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 27/60(45%) | 0/60(0%) | Plus/Minus |
Query 1 VGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITS 180 VGSLT+ G P+PF A KL L EL AGT T V +S S IK L+ + I S Subject 10630 VGSLTSARNGFPKPFKAVIRKLLLNELYFAGTEQVTPTTATPV*VSASVIKPLRKRAIRS 10809
Range 6: 10279 to 10320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Minus |
Query 490 VLKVVPKSIPTSIS 531 VL VVPKSIPTSI+ Subject 10279 VLNVVPKSIPTSIT 10320
Nucleotide Sequence (429 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
323.6 | 1762.6 | 38% | 6.033e-88 | 95% | NC_004667 | |
205.4 | 349.1 | 52% | 2.307e-52 | 32% | NC_022072 | |
142.7 | 189.5 | 43% | 1.82e-33 | 44% | NC_016509 | |
125.7 | 125.7 | 31% | 2.31e-28 | 40% | NC_029783 | |
85.4 | 85.4 | 30% | 3.176e-16 | 32% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 2079 to 2483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
323.6 bits(700) | 0.0 | 133/135(99%) | 0/135(0%) | Plus/Plus |
Query 2 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ 406 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAV+ Q Subject 2079 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVRSQ 2483
Range 2: 2078 to 2482 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
304.4 bits(658) | 0.0 | 134/135(99%) | 0/135(0%) | Minus/Minus |
Query 1 CGLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF 405 C LTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF Subject 2078 CDLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF 2482
Range 3: 2080 to 2484 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
301.2 bits(651) | 0.0 | 131/135(97%) | 0/135(0%) | Plus/Plus |
Query 3 RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVELRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRSIL*EHSRIERLSMPLGRSNRK 407 RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCV LRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRS L* HSRIERLSMPLGRS RK Subject 2080 RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRSTL*GHSRIERLSMPLGRSGRK 2484
Range 4: 2079 to 2483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
290.7 bits(628) | 0.0 | 131/135(97%) | 0/135(0%) | Minus/Minus |
Query 2 LRFDRPNGILKRSILECSYSIERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNXXXXXXXXSTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL 406 LR DRPNGILKRSILEC YS+ERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLS THSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL Subject 2079 LRPDRPNGILKRSILECPYSVERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL 2483
Range 5: 2078 to 2278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 66/67(99%) | 0/67(0%) | Plus/Plus |
Query 1 EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*SSEVTWN 201 EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV* SEVTWN Subject 2078 EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN 2278
Range 6: 2318 to 2485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 53/56(95%) | 0/56(0%) | Plus/Plus |
Query 241 QIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQYYRNIRE*NV*VCRWGGQTAK 408 QIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQ+YR+IRE*NV*VCRWGGQ AK Subject 2318 QIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQHYRDIRE*NV*VCRWGGQVAK 2485
Range 7: 2176 to 2484 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.2 bits(411) | 0.0 | 99/103(96%) | 0/103(0%) | Minus/Minus |
Query 99 FAV*PPQRHTQTFYSRMFL*Y*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICXXXXXXXXXXXPQFQVTSELYT**DDGNHNGIPHTLA*TRSRTKCVH 407 FA *PPQRHTQTFYSRM L* *ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSE YT**DDGNHNGIPHTLA*TRSRTKCVH Subject 2176 FAT*PPQRHTQTFYSRMSL*C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*TRSRTKCVH 2484
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2798 to 3202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 83/135(61%) | 0/135(0%) | Plus/Plus |
Query 2 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ 406 +R GD L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK EVT R +V SF K++V IPV+ G+ +SFK++VLD+DFVDR+YSYALNT+ FE RTFEYAVGAV+ Q Subject 2798 RRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYAVGAVRSQ 3202
Range 2: 2827 to 3201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 58/125(46%) | 0/125(0%) | Minus/Minus |
Query 31 CGLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PT 405 C LTAPTAYSNV S + V A E STKS S T LKD P+ TG+ T ND T VTS+ F* V+ W*P PSYS+L T PD V V+ T E C Y SP PT Subject 2827 CDLTAPTAYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPT 3201
Range 3: 2930 to 3202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 29/91(32%) | 0/91(0%) | Minus/Minus |
Query 134 LRFDRPNGILKRSILECSYSIERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNXXXXXXXXSTHSEMMVTTTVSLIL 406 LR P+GILKR L+ + ++ + I + +V ++ LK H R+ +RY F +R + P NL L+S + ++V V+LIL Subject 2930 LRSHGPDGILKRPHLKVRHRVQGIRIHAIHEVSVKH*RLKRHVRSLQHRYHDNCFCGKR*NHHPPGNLLGSDFLTSRNR*VVVAYPVTLIL 3202
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2660 to 3061 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 59/134(44%) | 0/134(0%) | Plus/Plus |
Query 5 REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ 406 R+GD + Y VG G+ Y HS + FF + V+ SG+ F +EY GYR GYH ++C + + R + +F G SLV IP +A +SF+ + LDSDFVDR+YSY LNT F +RTFEYAV + Q Subject 2660 RKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQ 3061
Range 2: 2887 to 3042 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 25/52(48%) | 0/52(0%) | Minus/Minus |
Query 232 TAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTN 387 TAYSNVL +N +VLS E STKSES+ I L + A +G+ T P N Subject 2887 TAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLN 3042
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 3198 to 3599 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 53/134(40%) | 0/134(0%) | Plus/Plus |
Query 5 REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ 406 R+GD L Y+VG G+ Y+HSF V T V S + EY GYRCGYHH+ M R + + GK++V P + FK I +D++FV R+Y+YALN TF RTFEYA+ + + Q Subject 3198 RKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYAMSSFRSQ 3599
Range 1: 1308 to 1694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 41/129(32%) | 0/129(0%) | Plus/Plus |
Query 20 LAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVKPQ 406 + Y +G G+ Y H + + T + V ++ G + + YEG R GY + + R+ S T T R S G +PV K + LD DFV+R+ SY LN RTFEY V ++ Q Subject 1308 VTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSYLLNVAAGVNERTFEYTVTNIRSQ 1694
Nucleotide Sequence (566 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
434.5 | 2449.6 | 21% | 3.678e-121 | 42% | NC_004667 | |
215.5 | 345.0 | 12% | 3.15e-55 | 38% | NC_022072 | |
78.0 | 202.5 | 25% | 7.563e-14 | 28% | NC_016509 | |
61.6 | 115.8 | 23% | 6.987e-09 | 25% | NC_005065 | |
84.0 | 130.4 | 12% | 1.218e-15 | 35% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 15032 to 15595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
434.5 bits(942) | 0.0 | 183/188(97%) | 0/188(0%) | Plus/Minus |
Query 2 ISVIQ*CEVEAVRSEPLRDAVLS*GSIRWLNFLLYK*SNGGVSKIPHEGSHSVGWRRIVFPS*YSFPYFRIT*VDFLLT*FGLHPIPVFDAYILYGRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYT 565 ISVIQ*CEVEAVRSEPLRDAVLS*GS RWLNFLLYK*SN GVSKIPHEGSHSVGWRR VFPS*YSFPYFRIT*VD LLT*FGLHPIPVFDAYILY RVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYT Subject 15032 ISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYT 15595
Range 2: 15031 to 15594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
430.9 bits(934) | 0.0 | 185/188(98%) | 0/188(0%) | Minus/Plus |
Query 3 RCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYRKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFYSHHHYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI 566 RCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLY KEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVF SHH+YSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI Subject 15031 RCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI 15594
Range 3: 15032 to 15595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
430.9 bits(934) | 0.0 | 184/188(98%) | 0/188(0%) | Minus/Plus |
Query 2 GVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 565 GVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPYCFDFALLDNRY Subject 15032 GVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRY 15595
Range 4: 15031 to 15594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
409.8 bits(888) | 0.0 | 183/188(97%) | 0/188(0%) | Plus/Minus |
Query 3 YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTP 566 YLLSSSAKSKQYGVNLFGTPCLARAV+AG*IFFSISRV+VV* KYLMKDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTP Subject 15031 YLLSSSAKSKQYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTP 15594
Range 5: 15033 to 15596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
391.9 bits(849) | 0.0 | 183/188(97%) | 0/188(0%) | Minus/Plus |
Query 1 V*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLP*RI*ASKTGIGWRPN*VKRKST*VIRK*GKLY*EGNTMRLQPTLCDPS*GIXXXXXXXXX*RRKFSQRILP*LSTASRRGSLRTASTSHYWITDI 564 V*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTL *RI*ASKTGIGWRPN*VKR+ST*VIRK*GKLY*EGNT+RLQPTLCDPS*GILLTP LLYL*RRKFSQR+LP*LSTASRRGSLRTASTSHYWITDI Subject 15033 V*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDI 15596
Range 6: 15033 to 15281 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 83/83(100%) | 0/83(0%) | Plus/Minus |
Query 316 WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLH 564 WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLH Subject 15033 WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLH 15281
Range 7: 15423 to 15533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 35/37(95%) | 0/37(0%) | Plus/Minus |
Query 64 A*LGQYTLAEFSSL*VE*WWCE*NTS*RIAQCWLETH 174 A*LGQYTLAEFSSL*VE* WCE NTS*RIAQCWLETH Subject 15423 A*LGQYTLAEFSSL*VE**WCEQNTS*RIAQCWLETH 15533
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 15940 to 16494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 88/185(48%) | 0/185(0%) | Minus/Plus |
Query 2 PSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 556 P+ +L+ + + + +L+ RG+ P+ V +I E+DIYDER++ EAL++N+RL L+ S G + D GN +V +IQLF+LYSTVK+ ++ Y++ L K+V LS+ VR AIL G D S TN VR++MRY+ +T ++LL+ K+QPAYTA AKHGVPKRF P+CFDFA+LD+RY Subject 15940 PTSELEKLQMVGTLDKLVVERGKAIYDTPEKVFNIRESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRY 16494
Range 2: 16155 to 16493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 54/113(48%) | 0/113(0%) | Plus/Minus |
Query 3 YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPIS 341 YLLS AKSKQ G NLFGTPCLA AV AG R+ V YL+ RT+LV + S P +IA LT+ LK T F + + LY L++ TV S KS I T FP+S Subject 16155 YLLSRIAKSKQNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFPLS 16493
Grapevine leafroll-associated virus 1, complete genome
Range 1: 15096 to 15410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 34/105(32%) | 0/105(0%) | Minus/Plus |
Query 14 MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALL 328 + + MIQ + +ST N+ + +V+ L +K + ++E+R I + N VR +MR+F+ TTI+L+ + P Y +A+HGV +F PY FD+ +L Subject 15096 LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCIL 15410
Range 2: 13685 to 13882 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 25/66(38%) | 0/66(0%) | Minus/Plus |
Query 23 LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDF 220 L+Y +V+ A++ G ++ N +R + R F+ T + L++ K++P +HGVPKRF PY FDF Subject 13685 LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDF 13882
Range 3: 16398 to 16829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 41/144(28%) | 0/144(0%) | Minus/Plus |
Query 2 DERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 433 + YL A +I L RL L+ D ++V +IQ V Y T + K V K V L + VR I+ TN +R +MR+++ TI L+ ++P AK G+ FD+ LLD R+ Subject 16398 ESTYLSKDVAKRITLALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF 16829
Range 1: 8772 to 8978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 25/69(36%) | 0/69(0%) | Minus/Plus |
Query 11 SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD 217 +Y+EV I + N VR+F+R+ + I L+I I+P +AK+G+P++F PYCFDF++++ Subject 8772 NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVN 8978
Range 2: 13578 to 13967 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 33/130(25%) | 0/130(0%) | Minus/Plus |
Query 11 QINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD 400 Q++ + +L GS + + +V + Q+ V+ T N D + K+ +Y VRE+I N +R FMR + + + L I+P ++K GVP F PY D + D Subject 13578 QLSPSITKLCNEVWGSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPD 13967
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 15317 to 15640 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 38/108(35%) | 0/108(0%) | Minus/Plus |
Query 2 IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 325 ++A+IQ V YSTV++ + D V + + Y++ + I + +N +R +MR+++ TTI+L+ I+P Y A HGV K + PYCFDF LD+RY Subject 15317 LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRY 15640
Nucleotide Sequence (1792 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
164.6 | 1511.6 | 16% | 2.052e-68 | 36% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 177 to 560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 67/128(52%) | 0/128(0%) | Minus/Plus |
Query 700 LRQFSFPHVNSTLEFYRFNKGNSDVNKFIVNLKPAGGAKVVDFSPKCAAYVYIGKLTQGVKRVFAPSPVNGYTRQFALVSGNGVAVRADGEKVKLVARSNSSDVSDSTNQAVTFEAVSHSPGCLSYYK 1083 LR FSFPHVN+TLE+ R+NK N DV F+ +K G K+ DF+P+CAA +YIGKLT+GVKR F P PV G+ RQ+A+VSG+ A+R DG+KV + AR+++S SD ++ V FEAVS++ + Y++ Subject 177 LRVFSFPHVNNTLEYVRYNKANGDVGAFLTTMKFIGNVKLSDFTPRCAAMIYIGKLTKGVKRTFVPPPVKGFARQYAVVSGSVSALRGDGKKVLMEARTSTSATSDVSDFDVVFEAVSNALLVVHYHR 560
Range 2: 8740 to 8922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 32/61(52%) | 0/61(0%) | Minus/Plus |
Query 243 GYPSYFRRCIDGEKFSPISLGRLALL**HTMCCDFSRSVRVG*GPTGGQQPALLERWKCWV 425 GYPSY R I +P+S G+ * C DF V VG*GPTG QQPAL RWKCW+ Subject 8740 GYPSYSCRSIHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWI 8922
Range 3: 8897 to 9043 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 29/49(59%) | 0/49(0%) | Minus/Plus |
Query 112 LEVLGSVRVHVSWPNICLGRVQQ*SLASLWGMTEVFRFSTVATM*VAHA 258 L GSV +S PNI LG VQ+ SL LWGMT RF TVA M*V HA Subject 8897 LRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHA 9043
Range 4: 9067 to 9153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 19/29(66%) | 0/29(0%) | Minus/Plus |
Query 12 HLGVCPRVASVRCPAASSKGR*KCWALQV 98 HLG CPR ASVR AA S R*KC L+V Subject 9067 HLGECPRAASVR*LAAGSTER*KC*VLKV 9153
Range 5: 8578 to 8625 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 13/16(81%) | 0/16(0%) | Minus/Plus |
Query 630 LLGEPSVRLIPVAILL 677 LLG PSV+LIPVA+LL Subject 8578 LLGVPSVKLIPVALLL 8625
Range 6: 179 to 529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 56/117(48%) | 0/117(0%) | Plus/Minus |
Query 731 ETASNVTA*FVLSETSDEFDLATNLTFSPSALTATPLPLTKANCLV*PLTGDGANTRFTPWVSLPI*T*AAHFGEKSTTLAPPAGLRLTMNLLTSLFPLLNR*NSKVELT*GKEN*R 1081 ETASN T+ SE ++ LA+ TF PS L+A PLT A C PLTG G N RFTP VS P+* AAH G KS P + TS LL SKV LT*GKE R Subject 179 ETASNTTSKSDTSEVAEVEVLASIKTFLPSPLSALTEPLTTAYCRANPLTGGGTNVRFTPLVSFPM*IIAAHLGVKSDNFTFPMNFMVVRKAPTSPLALLYLTYSKVLLT*GKEKTR 529
Range 7: 8715 to 8927 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 31/71(44%) | 0/71(0%) | Plus/Minus |
Query 238 NRTQHFQRSKRAGCWPPVGP*PTLTLREKSQHMVCYHNSANRPKDIGENFSPSMHRRK*EGYPKRKNSLLY 450 ++ QHFQR+ AGCW PVGP PT T KS+H+ Y + P D G M R++*EG P+ LY Subject 8715 DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCMLRQE*EG*PET*RKTLY 8927
Range 8: 8908 to 9045 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 25/46(54%) | 0/46(0%) | Plus/Minus |
Query 110 SACATYMVATVLNLNTSVIPQRLARLYCCTRPKQMFGQLTCTRTEP 247 +AC TY+ ATVLNL VIPQR +L CT PK++FG L T P Subject 8908 AACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLP 9045
Range 9: 9050 to 9160 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 25/37(68%) | 0/37(0%) | Plus/Minus |
Query 5 PTIPAEPSTFSALLSWLLDT*PRLP*GKRPNALTQSA 115 PT+P+ PSTFSA S LL T*P LP*G RPNA T A Subject 9050 PTVPSGPSTFSAP*SRLLVT*PTLP*GTRPNACTSYA 9160
Range 10: 8577 to 8624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 12/16(75%) | 0/16(0%) | Plus/Minus |
Query 631 RRIATGINLTDGSPRR 678 RR ATGIN TDG+P+R Subject 8577 RRSATGINFTDGTPKR 8624
Range 11: 8667 to 8726 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 13/20(65%) | 0/20(0%) | Plus/Minus |
Query 434 KTLYCTSQAGINLTD*TKRK 493 KTLYCT G+ LT *TK+K Subject 8667 KTLYCTCSTGLVLTV*TKQK 8726
Range 12: 8821 to 8925 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 22/35(63%) | 0/35(0%) | Plus/Minus |
Query 240 PNPTLPAL*KSRLLATCWTLTYPDATRKVTTHGVL 344 PNPTLPA K RLL TCW L+Y D KV T G L Subject 8821 PNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL 8925
Range 13: 9054 to 9161 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 20/36(56%) | 0/36(0%) | Plus/Minus |
Query 4 PHYTCRAQHFQRPFELAAGHLTEATLGQTPKCAHAI 111 P+ T R HFQR E AA HLT+A LG +PKC H + Subject 9054 PNCTFRT*HFQRSVEPAASHLTDAALGHSPKCMHVL 9161
Range 14: 8949 to 9041 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 20/31(65%) | 0/31(0%) | Plus/Minus |
Query 114 HVRLTW*LRC*T*TLPSSPKDSLDSTAVHDL 206 H RLT L+ *T*+LPSSPKD+L+ T VH L Subject 8949 HARLT*QLQS*T*SLPSSPKDTLN*TPVHRL 9041
Range 15: 8729 to 8776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 10/16(62%) | 0/16(0%) | Plus/Minus |
Query 389 PHLCTDESRKGTPKEK 436 PH+C+D+SRKG P+ K Subject 8729 PHVCSDKSRKGNPRLK 8776
Range 16: 8565 to 8630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 13/22(59%) | 0/22(0%) | Plus/Minus |
Query 555 TRIRSATGIALTDGTRRREN*N 620 T RSATGI TDGT +R N Subject 8565 TSRRSATGINFTDGTPKRRRKN 8630
Range 17: 8668 to 8730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 10/21(48%) | 0/21(0%) | Plus/Minus |
Query 430 RKNSLLYKSSRY*PHGLD*TK 492 +K+ LLY R PHG++ TK Subject 8668 KKDPLLYMFHRSCPHGVNKTK 8730
Range 18: 8828 to 8932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 21/35(60%) | 0/35(0%) | Plus/Minus |
Query 233 TRTEPNTSSALKEQAVGHLLDPNLP*RYEKSHNTW 337 T T+ NTSSA QAVGHLL P LP KS +TW Subject 8828 TETKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTW 8932
Range 19: 9049 to 9156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 21/36(58%) | 0/36(0%) | Plus/Minus |
Query 9 LYLQSPALSAPF*AGCWTPNRGYPRANAQMRSRNQH 116 LYLQ ALSA AGC +P+R PRA AQM +R H Subject 9049 LYLQDLALSALRRAGC*SPDRRCPRALAQMHARLTH 9156
Range 20: 315 to 533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 26/73(36%) | 0/73(0%) | Plus/Minus |
Query 727 MRDRFKRNGLIRTIGNVRRV*PSH*LDFLAVRPNRHTIAAN*GELPSIAVNG*WGKYTLHPLGELTNINVSGA 945 +R+ F+ + IR +G+ P D L + R AA+ LP N K TLHP GEL+N+N S A Subject 315 IRNSFEYDVEIRHVGSCGS*GPCLHQDLLTIPSQRAD*AADNSVLPCKPFNWWGDKRTLHPFGELSNVNHSCA 533
Range 21: 8981 to 9040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 13/20(65%) | 0/20(0%) | Plus/Minus |
Query 115 MCDLHGSYGAKPKHFRHPPK 174 M DLH SY KP RHPPK Subject 8981 MHDLHSSYSPKPSRSRHPPK 9040
Range 22: 102 to 248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 18/49(37%) | 0/49(0%) | Plus/Minus |
Query 1012 VTISLIKPVKLQSGVNVRKGELTQNTKTKTKER*ANRTTLNKNRRERNS 1158 +TI L+ P LQ +NVRKGE Q E * + N+N R + Subject 102 ITIGLVVPNVLQGVINVRKGENAQWANVVHSET*KLKRRGNRNNGLRRT 248
Range 23: 8666 to 8755 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 13/30(43%) | 0/30(0%) | Plus/Minus |
Query 405 TKVGRVPQKKKLSTVQVKPVLTSRTRLNEK 494 ++ G K++ STV V PVL+SR N+K Subject 8666 SRKGNPRLKERPSTVHVPPVLSSRCEQNKK 8755
Range 24: 8567 to 8626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Minus |
Query 629 KEGSPLVLTSQMARLEDRNK 688 +EG P VLTS+MARL + K Subject 8567 REGVPPVLTSRMARLREDEK 8626
Range 25: 8733 to 8933 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 32/67(48%) | 0/67(0%) | Minus/Plus |
Query 232 SFGVPFLLSSVHRWGEIFSYIFGTIGAIMIAHHVL*LFS*RQGRLGSNRWPTACSFRALEVLGSVRV 432 S G+PFLL S H G + S I T IA V L + +GR+G+NR PTAC+ ALEVL V V Subject 8733 SLGLPFLLLSEHTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLVSV 8933
Range 26: 9050 to 9157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 20/36(56%) | 0/36(0%) | Minus/Plus |
Query 8 C*LRERIWAFALG*PRLGVQQPAQKGAESAGLCRYS 115 C R IWA ALG R G QPA + AESA RYS Subject 9050 CVRRACIWASALGQRRSGD*QPALRSAESARS*RYS 9157
Range 27: 332 to 406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 14/25(56%) | 0/25(0%) | Minus/Plus |
Query 854 YW*AHPRGEACICPITR*RLY*AIR 928 +W AH RGEA +CP T *R+ A+R Subject 332 HWKAHQRGEAYVCPPTS*RVCTAVR 406
Range 28: 8935 to 8997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 13/21(62%) | 0/21(0%) | Minus/Plus |
Query 158 AEHLFRSCTAVESSESLGDDG 220 A++ FR CT V S SLGDDG Subject 8935 AKYPFRRCTGV*FSVSLGDDG 8997
Range 29: 4074 to 4157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 13/28(46%) | 0/28(0%) | Minus/Plus |
Query 706 SNSSDVSDSTNQAVTFEAVSHSPGCLSY 789 +N DV STN VT E +HSP + Y Subject 4074 TNVRDVGISTNGEVTGEEETHSPRSVQY 4157
Range 30: 8982 to 9041 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 14/20(70%) | 0/20(0%) | Minus/Plus |
Query 114 FGG*RKCLGLAP*LPCKSHM 173 FGG*R+ LGL *L CKS M Subject 8982 FGG*RERLGLGL*LLCKSCM 9041
Range 31: 8577 to 8624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 12/16(75%) | 0/16(0%) | Minus/Plus |
Query 631 SSRRAICEVNTSGDPS 678 S RRAI EVNT G PS Subject 8577 SLRRAIREVNTGGTPS 8624
Range 32: 8744 to 8926 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 33/61(54%) | 0/61(0%) | Minus/Plus |
Query 239 TLPTFVGA*MGRNFLLYLWDDWRYYDSTPCVVTFLVASG*VRVQQVANSLLF*SAGSVGFG 421 TLPT VGA M L YL D S P V TF + S * R QQV NSL AGSVGFG Subject 8744 TLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFG 8926
Nucleotide Sequence (305 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
214.1 | 1037.4 | 25% | 3.174e-55 | 82% | NC_004667 | |
123.0 | 123.0 | 32% | 8.924e-28 | 52% | NC_022072 | |
76.7 | 76.7 | 32% | 7.62e-14 | 35% | NC_029783 | |
55.6 | 55.6 | 31% | 1.686e-07 | 33% | NC_005065 | |
55.6 | 103.4 | 17% | 1.686e-07 | 39% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 6198 to 6494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 89/99(90%) | 0/99(0%) | Minus/Plus |
Query 1 MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 297 MHQ LLQLGVFATGASEGLFF DIN IPFIN EK FRMDC VFVPKKESV+YTSKSYR PLD CY LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP Subject 6198 MHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 6494
Range 2: 6198 to 6494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.2 bits(424) | 0.0 | 82/99(83%) | 0/99(0%) | Plus/Minus |
Query 1 WPFGQ*SHYRLILTTNDLFRVTLFRSPYGH*GQEVAII*RSPV*FRSVYNAFLLWNKNRTIHPKRLLAVYEWYVIYVCEKEAFRRAGCEDA*L**GLMH 297 WPFGQ S+Y +LT NDLFRVTLFRSPYGH*GQ+VA I*R+PV FRSVYNAFLLWNKN TIHPK LL VYEWY+IYV +KEAFRRAGCEDA*L** LMH Subject 6198 WPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMH 6494
Range 3: 6199 to 6492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 83/98(85%) | 0/98(0%) | Minus/Plus |
Query 3 CIKPYYN*ASSQPARRKASFSQT*ITYHS*TARRRLGWIVLFLFQRRKALYTLLNHTGDR*MIATSCPQ*P*GERKSVTLKRSLVVRISR**DHCPKG 296 CIK YYN*ASSQPARRKASF +T*I YHS*T RR LGWIVLFLFQRRKALYTLLN TG R*M AT CPQ*P*GERKSVTLKRSL VR ++**D CPKG Subject 6199 CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKG 6492
Range 4: 6197 to 6442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.9 bits(371) | 0.0 | 74/82(90%) | 0/82(0%) | Plus/Minus |
Query 53 FSG*HFSVPLTVIEDKK*QSSNGHLYDLEVYITLSFFGTKTGQSILNAFSLFMNGM*FMSAKKRPSDAPVAKTPSCSKA*CI 298 FSG*HFSVPLTVIED K*Q+SNGHLYDLEVY TLSFFGTKT QSILN FSLFMNG+*FMS KKRPSDAPVAKTPSCSK *CI Subject 6197 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CI 6442
Range 5: 6265 to 6492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 62/76(82%) | 0/76(0%) | Plus/Minus |
Query 3 AFWTVISLPAYPYH*RPFQGNTFPFPLRSLRTRSSNHLTVTCMI*KCI*RFPSLEQKQDNPS*TPSRCL*MVCDLC 230 AFWT I L PY *RPFQGNTFPFPLRSLRT SS HLT TC I*KCI RFPSLEQKQ NPS*TPS CL*MV DLC Subject 6265 AFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLC 6492
Range 6: 6266 to 6493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 62/76(82%) | 0/76(0%) | Minus/Plus |
Query 2 HKSHTIHKQREGV*DGLSCFCSKEGKRYIHF*IIQVTVRXXXXXXLNDRKGNGKVLP*KGR*W*G*AGSEITVQKA 229 HKS TIHKQ EGV*DGL CFCSKEGKR IHF*I+QV+VR LLL+VLNDRKGNGKVLP*KGR* *G S+I VQKA Subject 6266 HKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKA 6493
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 7262 to 7558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 51/99(52%) | 0/99(0%) | Minus/Plus |
Query 1 MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 297 MH+ LLQ G FA+GA EG+F+ D++ IPFIN EK FR P+K + YT ++YR PLD C+ LS++ EKCY VVSG PVVRS KRP Subject 7262 MHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRP 7558
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 7011 to 7307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 35/99(35%) | 0/99(0%) | Minus/Plus |
Query 1 MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRP 297 +H+ L + A E + + D+N IPF N EK F M P + + YT+ SYR P D CY LS M + CYP V + +D+ +RS+ P Subject 7011 LHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIP 7307
Range 1: 4803 to 5090 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 32/96(33%) | 0/96(0%) | Minus/Plus |
Query 10 MHQALLQLGVFATGASEGLFFADINHIPFINSEKAFRMDCPVFVPKKESVIYTSKSYR*PLDDCYFLSSMTVRGTEKCYPEKVVSGKDKPVVRSLS 297 +H L++ GA E + D IPFIN ++F V K VI + SYR P D C LS + CYP V G RS+S Subject 4803 VHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVS 5090
Grapevine leafroll-associated virus 1, complete genome
Range 1: 6733 to 6924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 25/64(39%) | 0/64(0%) | Plus/Minus |
Query 80 LTVIEDKK*QSSNGHLYDLEVYITLSFFGTKTGQSILNAFSLFMNGM*FMSAKKRPSDAPVAKT 271 ++VI+D * +S GHLY++ VY S + + N FSL +NG+*F+S S P+A T Subject 6733 ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATT 6924
Nucleotide Sequence (425 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
276.9 | 1521.2 | 29% | 6.928e-74 | 87% | NC_004667 | |
137.2 | 309.0 | 25% | 4.303e-42 | 58% | NC_022072 | |
99.1 | 203.4 | 24% | 1.908e-28 | 45% | NC_016509 | |
100.0 | 231.5 | 34% | 3.98e-29 | 39% | NC_029783 | |
70.3 | 124.6 | 25% | 3.755e-17 | 50% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10266 to 10685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 122/140(87%) | 0/140(0%) | Plus/Minus |
Query 4 SPKVENR***VFYSRLS*GIEGCGCRFVNNTSNRYTKTFQCLNNEASFKGVIISRYRYNCGCNRSRRIPFALQYQGSQE*THHVNDPQ*GVRSGT*TSD**GASAVYLYGVCGF*FLNVTFDVIPRHTYPPFRVNIQPSL 423 SPK++NR***VFYSRLS*GIEGCG RFVNNTSNRYTKTF LNNEASFKGVI+SRYRYN CNR RRIPFALQYQGSQE*T++VNDPQ*GV SGT*TS+**GASAVYL+GVC F*FL+V FDVIPRHT PPFRVNIQPSL Subject 10266 SPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVAFDVIPRHTCPPFRVNIQPSL 10685
Range 2: 10266 to 10688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.9 bits(574) | 0.0 | 139/141(99%) | 0/141(0%) | Minus/Plus |
Query 1 EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDXXXXXXXXXXXXGPDTLLRVVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG 423 EGRLYVNPKRW GVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDV+CLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG Subject 10266 EGRLYVNPKRWAGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG 10688
Range 3: 10265 to 10687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
257.7 bits(556) | 0.0 | 140/141(99%) | 0/141(0%) | Plus/Minus |
Query 2 PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVSGXXXXXXXXXXXXLSIFTVYVGFNFST*RSTLSLVTPTHLFGLTYNLPS 424 PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTP HLFGLTYNLPS Subject 10265 PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTPAHLFGLTYNLPS 10687
Range 4: 10409 to 10687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.6 bits(403) | 0.0 | 82/93(88%) | 0/93(0%) | Minus/Plus |
Query 2 TGHLIEGR*RDVFILESLDTGVRKVYVYYGYSRSCNGTG*L*LL*TKLRC*GTERSWYTG*RCC*RTDSRSPLFLS*VASRRPIISGFRLWGR 280 T HLIEGR*R++FILESLDTGVRKVYVY GYS CNGTG*L*LL*TKLRC*G +RSWYTG*RCC*RTD RSPLFLS*VASRRPIISGF WGR Subject 10409 TRHLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGR 10687
Range 5: 10265 to 10357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 29/31(94%) | 0/31(0%) | Minus/Plus |
Query 332 RGKVVC*PEKVGRCDEG*RRTLR*EIKTHIH 424 RGKVVC*PEKVGRCDEG*RRTLR EIKT+IH Subject 10265 RGKVVC*PEKVGRCDEG*RRTLRREIKTYIH 10357
Range 6: 10264 to 10485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 67/74(91%) | 0/74(0%) | Minus/Plus |
Query 204 *REGCMLTRKGG*V*RGITSNVTLRN*NPHTP*R*TAEAPY*SEV*VPDRTPY*GSLT*CVYS*EP*YWSAKGI 425 *REGCMLTRKGG V*RGITSN T RN*N HTP*R*TAEAPY* EV*VPD+TPY*GSLT* VYS*EP*YWSAKGI Subject 10264 *REGCMLTRKGGQV*RGITSNATSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI 10485
Range 7: 10531 to 10686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 48/52(92%) | 0/52(0%) | Minus/Plus |
Query 3 ITPLNEASLLRH*KVLVYRLEVLLTNRQPQPSIP*LSRE*KTYY*RFSTLGE 158 ITPLNEASLLR *KVLVYRLEVLLTNR+PQPSIP*LSRE*KTYY*RF LGE Subject 10531 ITPLNEASLLRR*KVLVYRLEVLLTNRRPQPSIP*LSRE*KTYY*RFLILGE 10686
Range 8: 10408 to 10686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.9 bits(323) | 0.0 | 81/93(87%) | 0/93(0%) | Plus/Minus |
Query 3 LPQSRKPLIIGLLLAT*LRNRGLRLSVR*QHL*PVYQDLSVPQQRSFV*RSYNXXXXXXXXXXXX*TYTFRTPVSRLSRINTSRQRPSIRCPV 281 LPQ++KPLIIGLLLAT*LRNRGLR SVR*QHL*PVYQDL PQQRSFV*RSY+QPVPLQ L*P *TYTFRTPVSRLSRIN RQRPSIRC V Subject 10408 LPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*RSYSQPVPLQQLL*PS*TYTFRTPVSRLSRINILRQRPSIRCLV 10686
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11381 to 11656 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 65/92(71%) | 0/92(0%) | Minus/Plus |
Query 1 DTLLRVVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG 276 D L V D++CLFLR LI E E T TVT+AVVTVPADYNSFKR F+V AL+GLGIPV+ ++NEPTAAALYSLAKS ++D+L+AVFDFGGG Subject 11381 DIKLSVTDIICLFLRGLIKEAESETGKTVTSAVVTVPADYNSFKRGFIVTALRGLGIPVKAIINEPTAAALYSLAKSGLDDMLIAVFDFGGG 11656
Range 2: 11237 to 11335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 19/33(58%) | 0/33(0%) | Minus/Plus |
Query 322 GRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 420 GRLY+NPKRWVGV N +++KLKP Y+V++ Subject 11237 GRLYLNPKRWVGVNAINFSSFMKKLKPAYSVEL 11335
Range 3: 11380 to 11655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 57/92(62%) | 0/92(0%) | Plus/Minus |
Query 2 PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVS 277 PPPKSKTA N SS+ DLA E +AAAVGS LTGIPRP A T K L EL*SAGTVTTA VTV V LS S I +N+HI S T + +S Subject 11380 PPPKSKTAINISSSPDLASEYKAAAVGSFMMALTGIPRPRRAVTMKPLLNEL*SAGTVTTAEVTVFPVSLSASLINPRRNRHIISVTDSLIS 11655
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10198 to 10467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 47/90(52%) | 0/90(0%) | Minus/Plus |
Query 1 LLRVVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG 270 L+RVVD++ LF++ ++LE E V+ V TVPA+YNSFKRSF+ AL+GLG P+R ++NEPT+AALY + AVFDFGGG Subject 10198 LVRVVDLVFLFVKGILLETEEAVGKAVSGVVCTVPAEYNSFKRSFLGVALEGLGKPLRALINEPTSAALYGAVRGGALKETYAVFDFGGG 10467
Range 2: 10051 to 10149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 18/33(55%) | 0/33(0%) | Minus/Plus |
Query 322 GRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 420 G LY+NPKRWVGV N + KL P Y VK+ Subject 10051 GGLYINPKRWVGVDGYNFQAVKRKLNPEYEVKL 10149
Range 3: 10203 to 10466 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 40/88(45%) | 0/88(0%) | Plus/Minus |
Query 2 PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTL 265 PPPKSKTA S L +AA VGS L G+P P A+ KLRL EL SAGTV T T + S SS + STTL Subject 10203 PPPKSKTAYVSFSAPPLTAPYKAADVGSFMRALNGLPNPSRATPKKLRLNELYSAGTVQTTPDTALPTASSVSSNIPFTKRKTKSTTL 10466
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 10625 to 10885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 45/87(52%) | 0/87(0%) | Minus/Plus |
Query 1 VVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG 261 + D++ LFL+ LI E E T V +VPA YNSFKRSF++ ALKGLG P+R +VNEPTAA L ++ S ++ + VFDFGGG Subject 10625 ITDLIALFLKGLITEAETQTGVAVVGVTCSVPAKYNSFKRSFLMTALKGLGKPLRALVNEPTAAGLLGMSVSSNDNTVYGVFDFGGG 10885
Range 2: 10463 to 10564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 17/34(50%) | 0/34(0%) | Minus/Plus |
Query 322 EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 423 EG LYVNPKRW+G+ N +++KLKP + V + Subject 10463 EGLLYVNPKRWIGMNSRNKHIFMDKLKPQHEVLV 10564
Range 3: 10630 to 10884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 38/85(45%) | 0/85(0%) | Plus/Minus |
Query 2 PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITS 256 PPPKSKT S D AAVGSLT+ G P+PF A KL L EL AGT T V +S S IK L+ + I S Subject 10630 PPPKSKTPYTVLSLLDTLIPNNPAAVGSLTSARNGFPKPFKAVIRKLLLNELYFAGTEQVTPTTATPV*VSASVIKPLRKRAIRS 10884
Range 1: 9658 to 9870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 37/71(52%) | 0/71(0%) | Minus/Plus |
Query 49 VVDVMCLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAK 261 VVD++ LF+R + + E V + V TVPADYNS+KRSF++E+ K L + VVNEPTAAALYS K Subject 9658 VVDLIALFVRGISVAIENQYGENVVSLVCTVPADYNSYKRSFLLESSKLLDQEIIAVVNEPTAAALYSALK 9870
Nucleotide Sequence (1013 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 12160 to 13167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
742.4 bits(1614) | 0.0 | 309/336(92%) | 0/336(0%) | Minus/Plus |
Query 3 LGIQEGKYVDVTQNLESTIVPLRVMEIKKRRVSAHVALPKVVSAYVDLYTNLQELLSDEVTKARTDTVSAYAADSMAFLVKMLPLTAREQWLRDMLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIKSFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVEDRAYRISEKRGINAQRILCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRSMINHADHASIIHYIKTNENQVTGTTLP 1010 + +Q GKYVDVTQNLESTIVPLRVMEIKKRR SAHV+LPKVVSAYVD YTNLQELLSDEVT+ARTDTVSAYA DSMAFLVKMLPLTAREQWL+D+LGYLLVRRRPANFSYD+RVAWVYDVIATLKLVI+ FFNKDTPGGIKDLKP VPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENY+LRLTPV ALII+L+YYS+YGTNATRIKRRPDFLNVRI+G+VEKVSLRGVEDRA+RISEKRGINAQR+LCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVR+ IN ADHASIIHYIKTNENQVTGTTLP Subject 12160 VSVQVGKYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPCVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQVTGTTLP 13167
Range 2: 12168 to 13169 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
628.4 bits(1365) | 0.0 | 281/334(84%) | 0/334(0%) | Minus/Plus |
Query 1 SGGEVCGRNAEFRKYDRAVKSYGNKEEASIGARCFTEGGICIRRSLYELAGVAVR*SN*GQNRYSFGLRC*LYGFLS*DVAPDSP*AVVERHVRISASTKTTGKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTICAYRVLRPLSRAFILFL*VEL*DDDR*RGKDMPGDRREVGAPSNGGKL*VKINPSGGLNNYADLLLRLRHKRYQD*TTPRFPQCEDKRKSRESFVTGGRRSRL*NIRKARDKRSTYIV*VL**SHMSG*ATLRHSQKQLEDAELCRWYVGV*HG*LYNF*GEKYDQPCRSR*HYTLY*DERKPGYRDYSTT 1002 SG EVCGRNAEFRKYDRAVKSYGNKE+ I FTEGGI +RR LYELAG+AV *SN*GQNRYSFG+R LYGFLS*DV PD *AVV+R RISA T+TT KFFLR KSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKT+CAYRV+RPLSRAF+LFL*V+L DDDR*RGKDMPGDRREVGAPSNGGKL*VKI+PS GLNNY +LL LRHKRYQD* TP FPQCEDK KSRE FVTGGRRS L*NIRKARDKRST I+*VL* SHMSG*ATLRHSQ+QLEDAELCR V V*HG*LYNF*GEKYDQ RSR*HYTLY DERKPGYR+YSTT Subject 12168 SGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKLRDDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPGYRNYSTT 13169
Range 3: 12648 to 13169 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.5 bits(752) | 0.0 | 162/174(93%) | 0/174(0%) | Plus/Minus |
Query 1 CGRVVPVTWFSFVLI*CIMLA*SAWLIILLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNIR*AFIPRFSDIL*ARSSTPRNETFSTFPLILTLRKSGRRLILVAFVP*TE**ISIIIKAATGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNL 522 CGRVVPVTWFSFVLI*CIMLA*SA LI+ LTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHN R*AFIPRFSDIL ARSSTPRNETFST P ILTLRKSGR LILVAFVP* E* SIIIKA TGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNL Subject 12648 CGRVVPVTWFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNL 13169
Range 4: 12168 to 12605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
296.6 bits(641) | 0.0 | 132/146(90%) | 0/146(0%) | Plus/Minus |
Query 565 IGTYGFKSLIPPGVSLLKNDFMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPNMSLNHCSRAVRGNILTKKAIESAA*AETVSVLALVTSSDSNSCKFV*RSTYADTTFGKATCADTRLFFISITLNGTIVLSKFCVTSTYFPS* 1002 IGT+GFKSLIPPGVSLLKN+ MTSLSVAITSYTQATL S*EKFAGRLRTSRYP+ S NHCSRAVRGNILTKKAIES A AETVSVLALVTSSDSNSCKFV*+ST ADTTFGK TCAD RLFFISITLNGTIVLSKFCVTSTYFP+* Subject 12168 IGTHGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYFPT* 12605
Range 5: 12475 to 13167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
460.6 bits(999) | 0.0 | 200/231(87%) | 0/231(0%) | Plus/Minus |
Query 3 W*SSPGNLVFVRLNIVYNASVICMVDHTSHLRSYTISRVIRQRTIYITQRLPIVSANAVMSPSQTCEITIVPTQYTLSVYPALF*YSIGAIFYPP*RNFLDFSSYPHIEEIWASFNPGSVCAVNGVVNQHNY*GRHWG*S*PIIFLH*TAHQLLGDLRAYLSPFTCRHLITQPREIG*KLVKGVEGLYRHIWF*VFNTPGCVLVEKRFYDQLERSDHVIYPSYSYVVGKIC 695 W*SS GNLVFVRL+IVYNASVIC VD SHLRSYTISRVIR R +YITQRLPIV ANAVMSPSQTCEI IVPT YTLSVYPALF*YS G IFYPP*RN LD S YPHIEEI ASFNPGSVCAVNGVV Q+NY*G HWG S* I+FLH*TAHQLLGDLRAYLSPFTCRHL+T PREIG KLVKGVE LYRH F*VFNTPGCVLVEK+ YDQLERSDHVIYPSYSYVVGKIC Subject 12475 W*SSSGNLVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRHTRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKIC 13167
Range 6: 12166 to 12432 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 71/89(80%) | 0/89(0%) | Plus/Minus |
Query 738 PLLTGCQGQHLN*ESHRVSSVGRNCIGSGLSYFI*QQLLQVRIKIYVCRYHLR*SNVRRYSPLLYFHNS*RHDRTF*ILRYVHILPLLN 1004 PLLT QG HLN*ESHRV SV RNCIGSG SYFI QQ LQVRIKIYV YHLR*+N+ S LYFHNS*RHDRTF*ILRYVHILP LN Subject 12166 PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPYLN 12432
Range 7: 12167 to 13168 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
594.4 bits(1291) | 0.0 | 280/334(84%) | 0/334(0%) | Plus/Minus |
Query 2 VVE*SR*PGFRSS*YSV*C*RDLHG*SYFSP*KLYNQPCHTPTYHLHNSASSNCFCECRNVA*PDM*DHYSTYTIYVERLSRAFLIFYRRDLLPPVTKLSRLFLLSSH*GNLGVV*SW*RLCRKRSSKSA*LLRPPLGLILTYNFPPLDGAPTSRRSPGISFPLYLSSSHNST*RNRMKARERGRRTL*AHMVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLCRRKNLPVVFVLADILTCLSTTAHGLSGATS*LRKP*SQQRRPKLYRFWP*LLHLTATPASSYKDLRMQIPPSVKQRAPILASSLFP*LLTARSYFLNSALRPHTSPPE 1003 VVE* R*PGFRSS*YSV*C*RDL *SYFSP*KLYNQPCHT T LHNSASSNC CECRNVA*PDM*D YSTY I+VERLSRAFLIF R DLLPPVTK SRLF LSSH*GN GV *SW*RLCRK SS *LLRP LG ILTY+FPPLDGAPTSRRSPGISFPLYLSSS N T*RNR KARERGR TL*AH VLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLL RRKNL VV V ADIL L TTAH SG TS*LRKP*S+ R PKLYRFWP*LLH TA PASSYK+LR +IPPSV IL SLFP*LLTARSYFLNSALRPHTS PE Subject 12167 VVE*FR*PGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPE 13168
Range 8: 12167 to 13015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
501.0 bits(1087) | 0.0 | 237/283(84%) | 0/283(0%) | Minus/Plus |
Query 155 FRRGSMWT*RRI*KVRSCR*ELWK*RRGEXXXXXXXXXXXLHT*IFIRTCRSCCQMK*LRPEPIQFRPTLLTLWLS*LRCCP*QPVSSG*ETC*DIC*YEDDRQIFPTT*E*LGYMT*SLRSSWS*NRFSTRTHPGVLKT*NHMCL*SPSTPFTSFHPISLG*VMR*RQVKGERYARRSPRSWCAV*WRKIIG*D*PQWRP**LC*FTTPFTAQTLPGLNDAQISSM*G*EEKSRKFRYGG*KIAPIEYQKSAG*TLNVYCVGTIVISHVWLGDITAFAETIG 1003 FR GSMWT*RRI*KVRSCR*ELWK*R+ E + L+YRRWY T*IFIRTCR+CC+MK*L PEPIQFR TL TLWLS*LRC P* VSSG*+TC*DIC Y DD+QIFPTT*E*LGYMT*SLRSSWS*+ FSTRTHPGVLKT*N +CL*S STPFTSF PISLG*V R*RQVKGERYARRSPRSWCAV*WRK I *D*PQ P**L +TTPFTAQTLPGL DA+ISSM*G* E+SR+FRYGG*KI P+EYQKSAG*TLNVY VGTI ISHVWLGDITAFA TIG Subject 12167 FR*GSMWT*RRI*KVRSCR*ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRVCL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REESRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIG 13015
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 13115 to 14110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 97/332(29%) | 0/332(0%) | Minus/Plus |
Query 15 LGIQEGKYVDVTQNLESTIVPLRVMEIKKRRVSAHVALPKVVSAYVDLYTNLQELLSDEVTKARTDTVSAYAADSMAFLVKMLPLTAREQWLRDMLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIKSFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVEDRAYRISEKRGINAQRILCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRSMINHADHASIIHYIKTNENQVTG 1010 L + GK ++ + +VPL + ++KR P VV +++ Y ++ + L D+ R + Y + +A++ + + ++ + L+R +P N +YD RVAW V + L I F + + +P+VP+E D HE +SYFSR++ K + PE+ + +++EN + A I+++YYS+YGTNA RI RRP L V +R + + L VE + IN R L R Y+ LT R + I RNNW+TL +DG +A+DT + + + D+ + +IK+NE +V G Subject 13115 LSVYLGKATGLSDLGPNLVVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGRVVSVSVTSARPFVPLEGTDQLHESNSYFSRVALTQGRSKQSSVVPELMMSAIDAVLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNEKRVEG 14110
Grapevine leafroll-associated virus 6, complete genome
Range 1: 11578 to 11778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 24/67(36%) | 0/67(0%) | Minus/Plus |
Query 273 EIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVED 473 E+ KLV L+ +N L +T A++++L Y Y TNA R P L+ I+ +V+KV GV++ Subject 11578 ELTRKLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE 11778
Grapevine leafroll-associated virus 5, complete genome
Range 1: 11141 to 11341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 23/67(34%) | 0/67(0%) | Minus/Plus |
Query 273 EIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVED 473 E+ KLV L+ N + +T A++I+L Y Y TNA R P L+ I+ +V++V GV++ Subject 11141 ELTRKLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE 11341
Grapevine leafroll-associated virus 4, complete genome
Range 1: 11588 to 11788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 23/67(34%) | 0/67(0%) | Minus/Plus |
Query 273 EIAEKLVRRLMEENYRLRLTPVAALIIMLIYYSVYGTNATRIKRRPDFLNVRIRGKVEKVSLRGVED 473 E+ KLV L+ +N L ++ A++++L Y Y TNA R P L+ I+G V V GV++ Subject 11588 ELTRKLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN 11788
Nucleotide Sequence (354 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
217.8 | 1157.3 | 25% | 3.242e-56 | 87% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 8332 to 8643 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 96/104(92%) | 0/104(0%) | Plus/Plus |
Query 40 QFCRLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRYAFSIKRGLSR*PRYSVSVPRFFVRLIPKGRRTYLSLPVCRLLLGVPSVRLIPVALLLEVGIKD 351 QFCRLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASR+AFSIKRG SR PRYSVSVPRFFVRLIPKGRRTYLS RLLLGVPSV+LIPVALLLEVGIKD Subject 8332 QFCRLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRWPRYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKD 8643
Range 2: 8332 to 8643 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.8 bits(456) | 0.0 | 90/104(87%) | 0/104(0%) | Minus/Minus |
Query 40 VFNTHFKKECHRY*PHGWHA*EKTTNWKTEISTTTLRY*PHEEPRHRNTIAWLTR*TPLYRKGITRSFPP*YSRLQGQQGKRLRPLNRAHVKIHAIVVI*PTEL 351 VFNTHF+KECHRY* HGWHA*EKT TEISTTTLRY*PHEEPRHRNTIAW TR TPLYRKG TRSFPP* S LQGQQGKRL PLNRAH++IHAIVVI*PTEL Subject 8332 VFNTHFEKECHRY*LHGWHA*EKTKK*ITEISTTTLRY*PHEEPRHRNTIAWPTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNRAHIEIHAIVVI*PTEL 8643
Range 3: 8345 to 8644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 87/100(87%) | 0/100(0%) | Plus/Plus |
Query 53 YITTIA*ILTCALFRGRSRFPCWP*RREY*GGKLLVMPFR*RGVYRVSHAIVFLCLGSS*G*YRRXXXXXXXXXXXXXS*ACHP*G*YRWHSFLKWVLKT 352 YITTIA*I CALFRG SRFPCWP*R+E+*GGKLLV+PFR*RGV RV HAIVFLCLGSS*G*YRRVVVLISV F VFS*ACHP* *YRWHSF KWVLKT Subject 8345 YITTIA*ISMCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFSKWVLKT 8644
Range 4: 8333 to 8539 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.9 bits(310) | 0.0 | 63/69(91%) | 0/69(0%) | Minus/Minus |
Query 41 PSVLTSRRTEAQKHYSVANAINPSLSKRHNEKLSTLIFSPSRPARKATPSSE*GARQDSRYCGNITYRT 247 PSVLTSRRTEAQKHYSVANAINPSLSKR NEKLSTL F PSRPARKAT SSE*GA +DSRYCGNITYRT Subject 8333 PSVLTSRRTEAQKHYSVANAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAHRDSRYCGNITYRT 8539
Range 5: 8580 to 8642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 20/21(95%) | 0/21(0%) | Minus/Minus |
Query 288 SLIPTSRRSATGINLTDGTPK 350 SLIPTSRRSATGIN TDGTPK Subject 8580 SLIPTSRRSATGINFTDGTPK 8642
Range 6: 8346 to 8645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
169.2 bits(363) | 0.0 | 88/100(88%) | 0/100(0%) | Plus/Plus |
Query 54 ILPQ*RES*RAPYSEDGVAFLAGLEGENIKVESFSLCLFDKEGFIALATL*CFCASVLREVNTEGXXXXXXXXXXXXXXRRAIREVNTGGTPS*SGY*RP 353 ILPQ*RES APYSED VAFLAGLEG+N KVESFS CLFDKEG IALATL*CFCASVLREVNTEGSSYLSQ SSSLRRAIREVNTGGTPS SGY*RP Subject 8346 ILPQ*RESRCAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIALATL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPSRSGY*RP 8645
Range 7: 8334 to 8540 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 65/69(94%) | 0/69(0%) | Minus/Minus |
Query 42 PFGINLTKNRGTETL*RG*RDKPLFIEKA*REAFHLNILAFKASKESDSVL*IGRTSRFTLLW*YNLQN 248 PFGINLTKNRGTETL*RG RD PLFIEKA REAFHL ILAFKASKESDSVL*IGRTSRFTLLW*YNLQN Subject 8334 PFGINLTKNRGTETL*RGQRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNLQN 8540
Nucleotide Sequence (1304 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 3309 to 4604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
901.9 bits(1962) | 0.0 | 395/432(91%) | 0/432(0%) | Plus/Minus |
Query 3 SRNTWGGFLLDMWCGARNGXXXXXXXXXXLSRYFGLGDFWNSCWWYTLRTGLYWFPVAFVGCGLCCVVIYSSPPFLNRRITDVAFWKQPLVVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDVSVLHASR*MGLFFTSNFPVGVNPHVAHICDTIIA*DTRSGSITIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIIHIPPLYRWDVSKLRYGVVKQTPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHSRRKPSSHD*RSTGYCARXXXXXXXXXL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYESDEVI*GNFTPK 1298 SRNTWGGFL+D W GARN R+ +F FHFFLS Y GLGD WN W T +TGLYW PVAFV GLCCV I SS PFL RR+TD AFW+QP VHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLD+SVLHASR*MGLFFTSNFPVG NPHVAHICD IIA*DTRSGSI IVTGNRFMLSPRWTSTFVIVKVPVIPKRLI+HIPPLYRWDVSKLRYGVVKQ PYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGH RRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYES EVI*GNFTPK Subject 3309 SRNTWGGFLIDDWRGARNSRQWYFLFHFFLSMYLGLGDLWNISLWRTHKTGLYWLPVAFVDRGLCCVTICSSSPFLCRRLTDDAFWEQPFAVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPHVAHICDNIIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPK 4604
Range 2: 3526 to 4047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
397.0 bits(860) | 0.0 | 170/174(98%) | 0/174(0%) | Plus/Minus |
Query 560 KWIHHYRHREPLHAESQMDQHLRHSQSPGNT*ASHHTHSSPLPVGRKQVEVWCR*ANPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSQPTKTLFARLKIHRILC 1081 KWIH YRHREPLHAESQMDQHLRHSQSPGNT*ASH THSSPLPVGRKQVEVWCR*A+PL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RS PTKTLFARLKIHRILC Subject 3526 KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC 4047
Range 3: 4090 to 4386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 92/99(93%) | 0/99(0%) | Plus/Minus |
Query 221 PLLESAHHRCRFLEATPCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRRKCIARFEVNGSLLHQ*LPRWC*SP 517 P L SA HR RFL AT CRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPR KCIARFEVNGSLLHQ*LPRWC*SP Subject 4090 PFLVSAPHRRRFLGATLCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP 4386
Range 4: 3310 to 3483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 57/58(98%) | 0/58(0%) | Plus/Minus |
Query 1124 TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRK**SHLRKLHSK 1297 TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRK *SHLRKLHSK Subject 3310 TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRKW*SHLRKLHSK 3483
Range 5: 4367 to 4606 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 55/80(69%) | 0/80(0%) | Plus/Minus |
Query 1 RVVTLGAGFSSTCGVALGTVVGGTSSFTSF*AGISDLATFGTAAGGTLSGLDCTGSLWPSSAAACAVLSSTALPPS*IGA 240 RVVTLGAGFSST GVA TV GTS FTSF*A SD TFG +A G L+ LDCTGSL PS A CAVL S ALP S +GA Subject 4367 RVVTLGAGFSSTIGVAPETVANGTSCFTSF*ACTSDWVTFGISACGELTRLDCTGSLSPSLTAVCAVLPSAALPLSCVGA 4606
Range 6: 3311 to 4303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
734.7 bits(1597) | 0.0 | 325/331(98%) | 0/331(0%) | Minus/Plus |
Query 304 LE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGCDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGFA*RHHTSTCLRPTGRGEECV**DA*VLPGL*L*RRCWSIWDSA*SGSR*R**WIHF*CLKL*WCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLRRGRGCPVCSCGGKTR*SVGFWYR*RYGFXXXXXXXXXXCLSPTV*W 1296 LE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVG DRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKG A*RHHTSTCLRPTGRGEECV *DA*VLPGL*L*RRCWSIWDSA*SGSR*R* WIHF*CLKL* CHKCARRGD*HQRGSYW*RRDPFTSKRAIHL RGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W Subject 3311 LE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*CCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W 4303
Range 7: 4499 to 4606 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 25/36(69%) | 0/36(0%) | Minus/Plus |
Query 1 VRNTCSERSETRSAADDRSERHTTCRGETRPKCYDS 108 VR TCSERSETRS D RH R ETRPKCYDS Subject 4499 VRGTCSERSETRSTIGDCFGRHANRR*ETRPKCYDS 4606
Range 8: 4340 to 4390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 11/17(65%) | 0/17(0%) | Minus/Plus |
Query 217 VASRKRHR*CADSRRGE 267 VA RKR R* AD+R+G+ Subject 4340 VAPRKRRR*GADTRKGK 4390
Range 9: 3604 to 3918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 104/105(99%) | 0/105(0%) | Minus/Plus |
Query 689 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GVCLTTPYLNLLTSH 1003 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*G CLTTPYLNLLTSH Subject 3604 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSH 3918
Range 10: 3310 to 3567 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 85/86(99%) | 0/86(0%) | Minus/Plus |
Query 1040 FGVKFP*MTSSLSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF 1297 FGVKFP*MTS LSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF Subject 3310 FGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF 3567
Range 11: 3958 to 4221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 84/88(95%) | 0/88(0%) | Minus/Plus |
Query 386 ITGTLTMTKVLVHLGLSMKRFPVTIVMDPLLVSQAMMVSQMCATWGLTPTGKLLVKKRPIHLEACNTLTSRKRLPRLQLWRKDKVIRR 649 ITGTLTMTKVLVHLGLSMKRFPVTI MDPLLVSQAMM+SQMCATWGL PTGKLLVKKRPIHLEACNTL SRKRLPRLQLWRKDKVIRR Subject 3958 ITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMMLSQMCATWGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR 4221
Range 12: 4273 to 4515 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 61/81(75%) | 0/81(0%) | Minus/Plus |
Query 92 STMSFTNSLVGKRLVRLRWTTRGCFQKATSVMRRFKKGGEL*MTTQHKPQPTKATGNQYSPVLRVYHQQLFQKSPSPKYLL 334 STMSFTNSLVGKRLVRLRWT +GC QKA+SV RR KKG EL M TQHKP+ TKATG+QYSPVL V H+ +FQ+SPSP+Y+L Subject 4273 STMSFTNSLVGKRLVRLRWTAKGCSQKASSVRRRHKKGEELQMVTQHKPRSTKATGSQYSPVL*VRHRLIFQRSPSPRYML 4515
Range 13: 4506 to 4604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.5 bits(113) | 0.0 | 24/33(73%) | 0/33(0%) | Minus/Plus |
Query 3 IPAQKEVKLEVPPTTVPSATPHVEEKPAPSVTT 101 + AQKEVK EVP TV ATP V+EKPAPSVTT Subject 4506 VHAQKEVKQEVPLATVSGATPIVDEKPAPSVTT 4604
Range 14: 3305 to 3940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
456.5 bits(990) | 0.0 | 210/212(99%) | 0/212(0%) | Plus/Minus |
Query 667 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVSXXXXXXXXXXXXIPRLYFHAIGAAPKDATNIPISTLFRNTKVMKSFKETSLQKS 1302 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPISTLFRNTKV+KSFKETSLQ S Subject 3305 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPISTLFRNTKVVKSFKETSLQNS 3940
Range 15: 3983 to 4159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 58/59(98%) | 0/59(0%) | Plus/Minus |
Query 448 VYCTLRGEWXXXXXXXXXXXXIPTSRTFVTPS*LETLEVDPSLSSPGTASC*VPDGPAP 624 VYCTLRGEWVSSSPVTSPLVLIPTSRTFVT S*LETLEVDPSLSSPGTASC*VPDGPAP Subject 3983 VYCTLRGEWVSSSPVTSPLVLIPTSRTFVTTS*LETLEVDPSLSSPGTASC*VPDGPAP 4159
Range 16: 4202 to 4315 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 38/38(100%) | 0/38(0%) | Plus/Minus |
Query 292 RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL 405 RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL Subject 4202 RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL 4315
Range 17: 3573 to 4022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
334.7 bits(726) | 0.0 | 150/150(100%) | 0/150(0%) | Minus/Plus |
Query 585 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMXXXXXXXXXGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP 1034 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP Subject 3573 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP 4022
Range 18: 4077 to 4439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.1 bits(403) | 0.0 | 108/121(89%) | 0/121(0%) | Minus/Plus |
Query 168 NVRDVGIXXXXXXXXXXXTHSPRSVQYTYXXXXXXXXXXXXERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDDKGLLPESDIGDAPIQEGGRAVDDNTAQAAADEGHR 530 NVRDVGI+TNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVD KGLLPES +G+AP QE GRA D NTAQ A +EG R Subject 4077 NVRDVGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDGKGLLPESVVGEAPTQERGRAADGNTAQTAVNEGDR 4439
Range 19: 3309 to 3458 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.6 bits(251) | 0.0 | 49/50(98%) | 0/50(0%) | Minus/Plus |
Query 1149 FWSEVSLNDFITFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG 1298 FWSEVSLNDF TFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG Subject 3309 FWSEVSLNDFTTFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG 3458
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 5225 to 5398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.4 bits(152) | 0.0 | 24/58(41%) | 0/58(0%) | Minus/Plus |
Query 639 VPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD 812 +P +VW+G + +L+ + + +SL++R L D +PQ+ + +EGRNVYDE L+YY+D Subject 5225 MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD 5398
Nucleotide Sequence (341 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
263.0 | 1244.8 | 25% | 7.487e-70 | 69% | NC_004667 | |
168.6 | 336.3 | 40% | 1.94e-41 | 39% | NC_022072 | |
106.9 | 155.6 | 53% | 7.417e-23 | 43% | NC_029783 | |
83.3 | 83.3 | 30% | 9.447e-16 | 40% | NC_005065 | |
81.0 | 198.1 | 42% | 1.783e-26 | 48% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 6396 to 6734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.0 bits(573) | 0.0 | 112/113(99%) | 0/113(0%) | Plus/Plus |
Query 1 LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT 339 LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTF DVVLFRTKKADDSLFTKQPHILVGLSRHT Subject 6396 LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHT 6734
Range 2: 6396 to 6734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 93/113(82%) | 0/113(0%) | Minus/Minus |
Query 1 CMS*QTNKYMRLFSEQ*VICLLCPEQHHITECFSLCFMYCHHWCFFPFSLQRPLHIRLLQLGHAQIHVSVYFSHVISSSNWPFGQ*SHYRLILTTNDLFRVTLFRSPYGH*GQ 339 C+S QTNKYMRLFSE VI L P+Q+HITECFSLCFM+CHHWCFF FSLQRPLHIRLLQLGHAQ+HVSVYFS+VIS SNWPFGQ S+Y +LT NDLFRVTLFRSPYGH*GQ Subject 6396 CVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQ 6734
Range 3: 6494 to 6736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 78/81(96%) | 0/81(0%) | Minus/Minus |
Query 99 RVCLDRPTSICGCLVNNESSAFFVLNNTTSPNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 341 RVCLD+PTSICGCLVN ESSAFFVLNNTTS NVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI Subject 6494 RVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 6736
Range 4: 6398 to 6442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 15/15(100%) | 0/15(0%) | Minus/Minus |
Query 3 FSG*HFSVPLTVIED 47 FSG*HFSVPLTVIED Subject 6398 FSG*HFSVPLTVIED 6442
Range 5: 6397 to 6558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 46/54(85%) | 0/54(0%) | Plus/Plus |
Query 2 CPQ*P*GERKSVTLKRSLVVRISR**DHCPKGQLELLMTWLK*TLTCICA*PSW 163 CPQ*P*GERKSVTLKRSL VR ++**D CPKGQLE LMT LK*TLTC CA*PSW Subject 6397 CPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQLEPLMT*LK*TLTCTCA*PSW 6558
Range 6: 6589 to 6735 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 38/49(78%) | 0/49(0%) | Plus/Plus |
Query 194 EKGKKHQ**QYMKHREKHSVMWCCSGQRRQMTHCSLNNRIYLLVCQDIH 340 EK KKHQ**Q MKHREKHSVMW C G+R+ MT SLNNRIYLLVC+D H Subject 6589 EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTH 6735
Range 7: 6398 to 6736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 92/113(81%) | 0/113(0%) | Plus/Plus |
Query 3 VLNDRKGNGKVLP*KGR*W*G*AGSEITVQKANWNY**RG*NKR*RVFVHDPXXXXXXXXXXXXKRERNTSDDST*STGKNIR*CGVVQDKEGR*LIVH*TTAYTCWSVKTYT 341 VLNDRKGNGKVLP*KGR* *G S+I VQKANWN+**R *NKR*RV VHDPVGEVGYEEVVEGKR+RNTSDDS *STGKNI+*CG+V D+E R*L +H*TTAYTCW V+T+T Subject 6398 VLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHT 6736
Range 8: 6397 to 6552 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 43/52(83%) | 0/52(0%) | Minus/Minus |
Query 2 GSCTNTRQRLFQPRHQ*FQLAFWTVISLPAYPYH*RPFQGNTFPFPLRSLRT 157 GSCT+TRQRLFQ RHQ FQLAFWT I L PY *RPFQGNTFPFPLRSLRT Subject 6397 GSCTSTRQRLFQLRHQWFQLAFWTAILLLVCPYR*RPFQGNTFPFPLRSLRT 6552
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 7460 to 7798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.6 bits(365) | 0.0 | 74/113(65%) | 0/113(0%) | Plus/Plus |
Query 1 LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT 339 LS++ EKCY VVSG PVVRS KRPIG+ DVA+I ADVYLC TQ EK +MKR L G+ PVMTVHEAQGKTF VVLFRTK+ADDS+F QPH LV LSRHT Subject 7460 LSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHT 7798
Range 2: 7558 to 7797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 47/80(59%) | 0/80(0%) | Minus/Minus |
Query 99 VCLDRPTSICGCLVNNESSAFFVLNNTTSPNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 338 VCL+R T G +N SSA VLN TT VFPCAS TVITG + P FN FIS FS V HKYTSA I ATS+ +PI Subject 7558 VCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI 7797
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 7209 to 7547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(229) | 0.0 | 49/113(43%) | 0/113(0%) | Plus/Plus |
Query 1 LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT 339 LS M + CYP V + +D+ +RS+ PI + + DV+L TQ EK+++ R + PV T+HEAQGKTF V L R KKADDS+ PH LVG+SRHT Subject 7209 LSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHT 7547
Range 2: 7343 to 7549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 31/69(45%) | 0/69(0%) | Minus/Minus |
Query 135 RVCLDRPTSICGCLVNNESSAFFVLNNTTSPNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS 341 RVCL+ PT G ESSAFF T NVFP AS V TG L S FS V K TS Subject 7343 RVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS 7549
Range 1: 5034 to 5339 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.3 bits(177) | 0.0 | 41/102(40%) | 0/102(0%) | Plus/Plus |
Query 34 CYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT 339 CYP V G RS+S + I + DV N DV++ TQ EK + + + + TVHE QGKT V + R K A+DS+FT H +V LSRHT Subject 5034 CYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHT 5339
Grapevine leafroll-associated virus 1, complete genome
Range 1: 7076 to 7258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.0 bits(172) | 0.0 | 32/61(52%) | 0/61(0%) | Plus/Plus |
Query 157 QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFGDVVLFRTKKADDSLFTKQPHILVGLSRHT 339 ++++ K + K V+T HEAQGKT+GDVVL R KKADD +F+++PHI+V LSRHT Subject 7076 EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHT 7258
Range 2: 6905 to 7087 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(120) | 0.0 | 29/61(48%) | 0/61(0%) | Plus/Plus |
Query 1 LSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR 183 LSSMT K YP V D +RS K PI T +D ADVYL MTQ EK++M+R Subject 6905 LSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR 7087
Nucleotide Sequence (498 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
281.9 | 716.2 | 40% | 2.626e-75 | 34% | NC_004667 | |
187.6 | 312.0 | 43% | 6.82e-47 | 36% | NC_022072 | |
77.1 | 199.8 | 26% | 1.191e-13 | 28% | NC_016509 | |
63.4 | 114.4 | 23% | 1.637e-09 | 27% | NC_005065 | |
84.9 | 159.0 | 21% | 5.384e-16 | 32% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 15209 to 15628 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
281.9 bits(609) | 0.0 | 117/140(84%) | 0/140(0%) | Plus/Plus |
Query 11 RLRRLVLSKGGSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKANSM 430 RLRRLVLSKGGS TP+DMGNMIV+MIQLFVLYSTVKNI VKDGY+VET LG K VYLSYSEVREAILGGKY + +N VRS+MRY+ HT ITLL+EK+IQPA TALAKHGVPKRFTPYCFDFALLDNRYYPAD+LKAN+M Subject 15209 RLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRYYPADVLKANAM 15628
Range 2: 15208 to 15627 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 91/140(65%) | 0/140(0%) | Minus/Minus |
Query 10 IELAFSISAG*YLLSNKAKSKQ*GVNLLGTPCFAKAV*AGWIRFSTSSVIAV*V*YLM*ERTTFDDVPSYFPPNIASLTSE*LRYTGLPPRIVSTL*PSFTSMFFTVEYSTKS*IIETIIFPMSWGVIDPPFDNTNLRNL 429 I LAF+ SAG*YLLS+ AKSKQ GVNL GTPC A+AV AG I FS S VI V* YLM +RT YFPPNIASLTSE*L+ T P VSTL PS T +FFTVE STKS I+ TIIFP+S GV PPF+ T+LR+L Subject 15208 IALAFNTSAG*YLLSSSAKSKQYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSL 15627
Range 3: 15257 to 15649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 47/131(36%) | 0/131(0%) | Minus/Minus |
Query 59 FDGLGTRH*IGLQYIRWVIPII*QSEIEAVRSKSFRHSVLR*GRVGWLDSFLY**CDRRMSIVSHVGTHYIRRCTIVLSSQYRLSNLRIA*IYRFTAEDCFHFVTILYVYVLHRRI*HEKLNHRDYHIPHV 451 F+ H + LQ++R VI +I E+EAVRS+ R +VL *G WL+ LY * + +S + H G+H + V S Y RI *+ H + + Y+L+ R+ +EKL H YHIPH+ Subject 15257 FNRYSASHCVSLQHVRRVISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHI 15649
Range 4: 15232 to 15558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 37/109(34%) | 0/109(0%) | Plus/Plus |
Query 34 ERGIDYAPRHGEYDSLYDSTFRAIFYGEEHRRKGWLQSGNNPRR*TCISKLF*G*RGDIGRKVRWYIVECSAFLHEILYSYGDHTTSRETNPTSLHGLSEARSA*KIYS 360 ER R+GEYDS +D+TFR + Y +E++R+ + G+ R + KLF I R++R + A LHE+ S+ ++T RE N S++ S AR +++S Subject 15232 ERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHS 15558
Range 5: 15228 to 15629 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 46/134(34%) | 0/134(0%) | Plus/Plus |
Query 30 YRKGDRLRPKTWGI**SL*FNFSCYILR*RT*T*RMVTKWKQSSAVNLYI*AILRLERRYWEESTMVHRRM*CVPT*DTILIRRSHY**RNESNQPTRP*RSTECLKDLLLTASISLC*IIGITQRIY*RPIQW 431 +RK + WGI** *+NFS L *R * + W+ + * I + + Y E +T+ + C P+* +L Y *R + +Q P* ST + L TAS S I IT+R *R QW Subject 15228 FRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDITRRTC*RLTQW 15629
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 16108 to 16527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.6 bits(403) | 0.0 | 77/140(55%) | 0/140(0%) | Plus/Plus |
Query 11 RLRRLVLSKGGSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKANSM 430 RL L+ S G + D GN +V +IQLF+LYSTVK+ + YK+ L GK V LS+ VR AIL G D +S+N VR+YMRYY +TA++LL+ ++QPAYTA AKHGVPKRF P+CFDFA+LD+RYY D++KAN++ Subject 16108 RLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANAL 16527
Range 2: 16155 to 16520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 55/122(45%) | 0/122(0%) | Minus/Minus |
Query 58 LAFSISAG*YLLSNKAKSKQ*GVNLLGTPCFAKAV*AGWIRFSTSSVIAV*V*YLM*ERTTFDDVPSYFPPNIASLTSE*LRYTGLPPRIVSTL*PSFTSMFFTVEYSTKS*IIETIIFPMS 423 LAF S *YLLS AKSKQ G NL GTPC A AV*AG + + AV *YL+ RT S P +IA LT+ L+ T P ++ L + TV YS KS I T FP+S Subject 16155 LAFITSCV*YLLSRIAKSKQNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFPLS 16520
Grapevine leafroll-associated virus 1, complete genome
Range 1: 15096 to 15434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 36/113(32%) | 0/113(0%) | Plus/Plus |
Query 71 MIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPAD 409 + + MIQ + +ST N+ + KV+ L G+ + ++E+R I N VR YMR+++ T I+L+ + P Y +A+HGV +F PY FD+ +L Y D Subject 15096 LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCILLPSYNRRD 15434
Range 2: 13685 to 13927 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 28/81(35%) | 0/81(0%) | Plus/Plus |
Query 179 LSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKA 421 L+Y +V+ A++ G T N +R Y R ++ TA+ L++ +++P +HGVPKRF PY FDF + D ++A Subject 13685 LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRA 13927
Range 3: 16440 to 16829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 37/130(28%) | 0/130(0%) | Plus/Plus |
Query 8 MRLRRLVLSKGGSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 397 + L RL L+ D ++V +IQ V Y T + K V GK V L + VR I+ +N +R YMR+++ I L+ ++P AK G+ FD+ LLD R+ Subject 16440 LALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF 16829
Range 1: 8772 to 9014 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 26/81(32%) | 0/81(0%) | Plus/Plus |
Query 182 SYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKAN 424 +Y+EV I + N VR+++R+ + I L++ I+P +AK+G+P++F PYCFDF++++ + D + AN Subject 8772 NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVNTVTHGVDAVFAN 9014
Range 2: 13620 to 13967 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 31/116(27%) | 0/116(0%) | Plus/Plus |
Query 41 GSITPQDMGNMIVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLD 388 GS + + +V + Q+ V+ T N D + GK +Y VRE+I N +R +MR + + + L I+P ++K GVP F PY D + D Subject 13620 GSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPD 13967
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 15317 to 15652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 40/112(36%) | 0/112(0%) | Plus/Plus |
Query 74 IVSMIQLFVLYSTVKNIDVKDGYKVETILGGKPVYLSYSEVREAILGGKYDGTSSNVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPAD 409 ++++IQ V YSTV++ + D V G+ Y++ + I + SN +R YMR+++ T I+L+ I+P Y A HGV K + PYCFDF LD+RY D Subject 15317 LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKD 15652
Range 2: 14031 to 14213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 22/61(36%) | 0/61(0%) | Plus/Plus |
Query 239 NVVRSYMRYYTHTAITLLVEKRIQPAYTALAKHGVPKRFTPYCFDFALLDNRYYPADILKA 421 N VR Y R ++ + I+ +I+P LA+HGV KRF YC D YY ++A Subject 14031 NPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRA 14213
Nucleotide Sequence (324 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
198.6 | 1081.7 | 39% | 1.726e-50 | 76% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 3364 to 3684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.6 bits(427) | 0.0 | 88/107(82%) | 0/107(0%) | Plus/Plus |
Query 1 CLLGFLWRLWVRPLLHGSTGAELRLTPEDMRAVVTKL*AH*VLKPLVVYAV*PLAQYPAGHLLCEEGFRRLWPSPGRP*LNVKSP*RCYRFLPHTPFPAAVC*AFGH 321 CL G+ WRLWVRP LHGS GAELRLT E RAVVTKL*A *V KP VVYAV*PLAQYP CEEGFRR PS GRP*LNVKSP*RCYRFLPHTPFPAAVC*AFGH Subject 3364 CLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGFRRR*PSLGRP*LNVKSP*RCYRFLPHTPFPAAVC*AFGH 3684
Range 2: 3366 to 3686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 85/107(79%) | 0/107(0%) | Minus/Minus |
Query 3 VCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPGDGHSRRKPSSHNK*PAGYCASGYTA*TTSGLRTQ*A*SFVTTARISSGVSRNSAPVLPCNRGRTQRRHKNPNK 323 +CPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRP DGH RRKPSSH+ GYCA G TA*TT GL T A*SFVTTAR+ S VSRNSAP+LPCN GRTQRRH+ P+K Subject 3366 MCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDK 3686
Range 3: 3365 to 3685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 81/107(76%) | 0/107(0%) | Plus/Plus |
Query 2 AYWDFCGVFGCGPCCMEVQARNCGLRQKICGQ*LRNSKLIEFSSRWWFTRYNR*HSIRRVICCAKRVFVGCGRHQGDRS*TSSPLSAVIVFYLIRHFRLQYARHLGT 322 AY D GVFGCGP CMEV ARNCG R K+ GQ*LRNSKL++F+SR WFTR+N *HSIR + AKRVFVG RH GDRS*TSSPLS IVFYLIRHFRLQY RHLGT Subject 3365 AYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGT 3685
Range 4: 3364 to 3684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 82/107(77%) | 0/107(0%) | Minus/Minus |
Query 1 VPKCLAYCSRKWRMR*KTITALRGLDV*LRSPW*RPQPTKTLFAQQMTRRILC*RLYRVNHQRLENSMSLEFRNYCPHIFWRKPQFRACTSMQQGPHPKTPQKSQ*A 321 VPKCL YCSRKWRMR*KTI LRGLDV*LRSP *R PTKTLFA+ RILC*RL RVNH+RL N SLEFRNYCP F R PQFRA TSMQ GPHPKTP+ S+*A Subject 3364 VPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC*RLNRVNHRRLVNLTSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*A 3684
Range 5: 3365 to 3571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 62/69(90%) | 0/69(0%) | Minus/Minus |
Query 2 DENPLRTTNDPPDTVLAVIPRKPPAA*ELNELRVSXXXXXXXXXXXAIPRLYFHATGAAPKDATKIPIS 208 DENPLRTT DPPDTVL V PRKPPAA ELNELRVS*LLPAYLLA AAIPRLYFHA GAAPKDAT IPIS Subject 3365 DENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPIS 3571
Range 6: 3614 to 3685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 21/24(88%) | 0/24(0%) | Minus/Minus |
Query 251 CAQMPSILQPEMAYEVENDNSAKG 322 CAQMP+ILQPEMAYEVEND++AKG Subject 3614 CAQMPNILQPEMAYEVENDSNAKG 3685
Range 7: 3492 to 3686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 61/65(94%) | 0/65(0%) | Plus/Plus |
Query 129 QAAGGLRGITASTVSGGSFVVRRGFSSXXXXXXXXXXXXXXPLALLSFSTSYAISGCSMLGIWAH 323 QAAGGLRG+T+STVSGGS VVRRGFSSAV VTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAH Subject 3492 QAAGGLRGLTSSTVSGGSLVVRRGFSSAVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAH 3686
Nucleotide Sequence (566 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
391.0 | 2225.7 | 28% | 4.671e-108 | 81% | NC_004667 | |
108.7 | 108.7 | 28% | 4.336e-23 | 34% | NC_022072 | |
51.0 | 51.0 | 12% | 1.039e-05 | 37% | NC_016417 | |
50.1 | 50.1 | 12% | 1.962e-05 | 36% | NC_016081 | |
48.7 | 48.7 | 12% | 5.087e-05 | 36% | NC_016416 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 12661 to 13155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
391.0 bits(847) | 0.0 | 163/165(99%) | 0/165(0%) | Plus/Plus |
Query 1 EMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQATG 495 EMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKG+VEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQ TG Subject 12661 EMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQVTG 13155
Range 2: 12663 to 13169 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
380.0 bits(823) | 0.0 | 163/169(96%) | 0/169(0%) | Plus/Plus |
Query 3 DDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRYVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPGDRTTKHT 509 DDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRR VSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPG R T Subject 12663 DDDR*RGKDMPGDRREVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDERKPGYRNYSTT 13169
Range 3: 12661 to 13155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
379.5 bits(822) | 0.0 | 162/165(98%) | 0/165(0%) | Minus/Minus |
Query 1 SGRLVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*RTVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDFSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHL 495 SG LVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*R VYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLD SLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHL Subject 12661 SGNLVFVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHL 13155
Range 4: 12662 to 13153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
379.1 bits(821) | 0.0 | 162/164(99%) | 0/164(0%) | Minus/Minus |
Query 2 RSPGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTYRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSS 493 R PGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLT RLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSS Subject 12662 R*PGFRSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSS 13153
Range 5: 12663 to 13154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
355.3 bits(769) | 0.0 | 162/164(99%) | 0/164(0%) | Minus/Minus |
Query 3 PVAWFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTFPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVI 494 PV WFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFST PFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVI Subject 12663 PVTWFSFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVI 13154
Range 6: 12662 to 13054 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 129/131(98%) | 0/131(0%) | Plus/Plus |
Query 2 R*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REKSRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TVR*RMT 394 R*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*RE+SRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*T R*RMT Subject 12662 R*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REESRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TGR*RMT 13054
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 13631 to 14110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 54/160(34%) | 0/160(0%) | Plus/Plus |
Query 16 KGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNENQATG 495 K + PE+ + +++EN + A II++YYSIYGTNA RI RRP L V ++ + + L VE + IN R L R Y+ LT R + I RNNW+TL +DG +A+DT + + + D+ + +IK+NE + G Subject 13631 KQSSVVPELMMSAIDAVLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNEKRVEG 14110
Grapevine leafroll-associated virus 6, complete genome
Range 1: 11578 to 11778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 25/67(37%) | 0/67(0%) | Plus/Plus |
Query 37 EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED 237 E+ KLV L+ +N L +T A++++L Y Y TNA R P L+ IK +V+KV GV++ Subject 11578 ELTRKLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE 11778
Grapevine leafroll-associated virus 5, complete genome
Range 1: 11141 to 11341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 24/67(36%) | 0/67(0%) | Plus/Plus |
Query 37 EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED 237 E+ KLV L+ N + +T A++I+L Y Y TNA R P L+ IK +V++V GV++ Subject 11141 ELTRKLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE 11341
Grapevine leafroll-associated virus 4, complete genome
Range 1: 11588 to 11788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 24/67(36%) | 0/67(0%) | Plus/Plus |
Query 37 EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED 237 E+ KLV L+ +N L ++ A++++L Y Y TNA R P L+ IKG V V GV++ Subject 11588 ELTRKLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN 11788
Nucleotide Sequence (1025 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
471.2 | 3996.3 | 51% | 0 | 69% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 16998 to 17612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
471.2 bits(1022) | 0.0 | 199/205(97%) | 0/205(0%) | Minus/Minus |
Query 3 FSTYAN*SI*IVTNKHTD*RYAYKYIPPITNVTSHDAIVYRYSDGFL*VPHRLLQQQTISTANKHAQISSDNCNPFENLTLAEQHNNFIVLRNKASRATS*RSRNLKRTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA 617 FSTYAN*SI*IVTNKHTD*RYAYKYIPP+TNVTSHDAIVYRYSDGF *VPHRLLQ+ TISTANKHAQISSDNCNPFENLTLAEQHN FIVLRNKASRATS*RSRNL+RTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA Subject 16998 FSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYA 17612
Range 2: 17635 to 17919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 89/95(94%) | 0/95(0%) | Minus/Minus |
Query 641 DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVEFSHLTSKYNLFYKNEKRTKRLA*LFHFSYFCLFQIY*RVFTY 925 DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREV+FSHLTSK NLFYK+E+RTKRLA*LFHFSYFCLFQIY*R+FT+ Subject 17635 DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTH 17919
Range 3: 16997 to 17614 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
458.8 bits(995) | 0.0 | 197/206(96%) | 0/206(0%) | Plus/Plus |
Query 2 LHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSSNFGIARMLLLTLCCGAL*NCYVVQPVSNFQTGYNYRYLFAHVC*RC*LFVVVEGDEALRETHQSSDTLLRRAK*RL*WVGCIYRRNVNRYVY*LLFICSN*HM*KR 619 LHRTILIDSIDSAFAYDQVGCLVGIARGLL+HSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFS NFGIARMLLLTLCCGAL* CYVVQPVSNFQTGYNYRYLFAHVC*RC*L VEGDEALR+THQSS TLLRRAK*RL* VGCIYRRNVNRYVY*LLFICSN*HM*KR Subject 16997 LHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAHVC*RC*LLAFVEGDEALRKTHQSSGTLLRRAK*RL*RVGCIYRRNVNRYVY*LLFICSN*HM*KR 17614
Range 4: 17609 to 17917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 92/103(89%) | 0/103(0%) | Plus/Plus |
Query 615 KGGRSVNY**VKTLQ*I*NKQK*EK*NN*ASLFVRFSFL*NRLYFEVR*LNSTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR 923 K R N * VK LQ*I*NKQK*EK*NN*ASLFVR S L*NR YFEVR*LN TSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR Subject 17609 KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR 17917
Range 5: 16997 to 17614 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
419.0 bits(908) | 0.0 | 199/206(97%) | 0/206(0%) | Minus/Minus |
Query 2 PFLHMLIRAYK**LXXXXXXXXXXXTSHPSQTSLRTTQ*CIATLMGFSKCLIAFYNNKQLAPLTNMRK*VAIIVTRLKI*HWLNNITIL*CSATKRQEQHPSDPEI*RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMFKQTSSYAHQTPHLVISEGGVYTVNENCSMQ 619 PFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*C ATLMGFSKCLIAFY + QLAPLTNMRK*VAIIVTRLKI*HWLNNIT L*CSATKRQEQHPSDPEI RELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRM KQTSSYAHQTPHLVISEGGVYTVNENCSMQ Subject 16997 PFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQ 17614
Range 6: 17616 to 17918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.8 bits(432) | 0.0 | 92/101(91%) | 0/101(0%) | Minus/Minus |
Query 622 T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNITYSTKTKNEQKD*PNYFIFLTFVYFKFIEESLPINNSQTF 924 T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRN TYSTK K+EQKD*PNYFIFLTFVYFKFIE LPI TF Subject 17616 T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TF 17918
Range 7: 17325 to 17615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.7 bits(484) | 0.0 | 94/97(97%) | 0/97(0%) | Plus/Plus |
Query 330 *RFVAEHYKIVMLFSQCQIFKRVTIIATYLRMFVSGANCLLL*KAMRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKG 620 *RFVAEHYK VMLFSQCQIFKRVTIIATYLRMFVSGANC LL*KAMRHLEKPIRVA+HYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKG Subject 17325 *RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKG 17615
Range 8: 16998 to 17264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.3 bits(468) | 0.0 | 88/89(99%) | 0/89(0%) | Plus/Plus |
Query 3 CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLNIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER 269 CIEQFSLTV*TPPSLMTKWGVWWA*LEVCL+IRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER Subject 16998 CIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYER 17264
Range 9: 17595 to 17918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.8 bits(373) | 0.0 | 96/108(89%) | 0/108(0%) | Plus/Plus |
Query 601 LAYVEKGEGL*IINR*RLFNKFEINKSKKNEXXXXXXXXXXXXCRIGYISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG 924 ++ KGEGL N *+ FNKFEINKSKKNEIIRLVFLFVFRFCRIG+ISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG Subject 17595 ISICRKGEGLTTSNG*KSFNKFEINKSKKNEIIRLVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG 17918
Range 10: 16996 to 17217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 74/74(100%) | 0/74(0%) | Plus/Plus |
Query 1 AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN 222 AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN Subject 16996 AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN 17217
Range 11: 17743 to 17919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 59/59(100%) | 0/59(0%) | Plus/Plus |
Query 749 RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V 925 RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V Subject 17743 RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V 17919
Range 12: 17464 to 17613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 48/50(96%) | 0/50(0%) | Plus/Plus |
Query 469 GT*RNPSE*RYTIASCEVTFVMGGMYL*A*R*SVCLLVTIYML*LAYVEK 618 GT*+NPSE*RYTIASCEVTFV GGMYL*A*R*SVCLLVTIYML*LAYVEK Subject 17464 GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEK 17613
Range 13: 17260 to 17403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 46/48(96%) | 0/48(0%) | Plus/Plus |
Query 265 NESSSQW**VLFKFRDR*DVALDALLRSTIKLLCCSASVKFSNGLQLS 408 NESSSQW**VL KFRDR*DVALDALLRSTIK+LCCSASVKFSNGLQLS Subject 17260 NESSSQW**VLSKFRDR*DVALDALLRSTIKMLCCSASVKFSNGLQLS 17403
Range 14: 17608 to 17703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 22/32(69%) | 0/32(0%) | Plus/Plus |
Query 614 KRGKVCELLIGKDSSINLK*TKVRKMK*LG*S 709 ++ KV + ++GK+ SINLK*TKVRKMK*LG*S Subject 17608 EKEKV*QPVMGKNPSINLK*TKVRKMK*LG*S 17703
Range 15: 17699 to 17917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 71/73(97%) | 0/73(0%) | Minus/Minus |
Query 705 PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GRV*SSYLEI*PILQKRKTNKKT 923 PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*G+V*SSYLEI PILQKRKTNKKT Subject 17699 PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKT 17917
Range 16: 16996 to 17217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 74/74(100%) | 0/74(0%) | Minus/Minus |
Query 1 VSIMYLLVH*SXXXXXXXXXXXXXRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS 222 VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS Subject 16996 VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLCS 17217
Range 17: 17257 to 17436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 58/60(97%) | 0/60(0%) | Minus/Minus |
Query 262 *HR*QTCANK*R*L*PV*KFDTG*TT*QFYSAPQQSVKSNILAIPKFEENLLPLTR*FVR 441 *HR*QTCANK*R*L*PV*KFDTG*TT* FYSAPQQSVKSNILAIPKF ENLLPLTR*FVR Subject 17257 *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*FVR 17436
Range 18: 17503 to 17613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 36/37(97%) | 0/37(0%) | Minus/Minus |
Query 508 LFYIC*LEHINSN**TYRLTLRL*IHPTHHKRHFARR 618 LFYIC*LEHINSN**TYRLTLRL*IHPT HKRHFARR Subject 17503 LFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARR 17613
Range 19: 9556 to 9654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 31/33(94%) | 0/33(0%) | Minus/Plus |
Query 927 YYVGYFGATPKVFPLCV*PLM*VSLFYFCLLGG 1025 YYVGYFGATP+VFPLCV*PLM*VSLFYFCL GG Subject 9556 YYVGYFGATPEVFPLCV*PLM*VSLFYFCLSGG 9654
Range 20: 9558 to 9653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 30/32(94%) | 0/32(0%) | Minus/Plus |
Query 928 LRRLFWRYAKGFSSLCVAFNVGFFVLFLPFRR 1023 LRRL WRYA+GFSSLCVAFNVGFFVLFLPFRR Subject 9558 LRRLLWRYARGFSSLCVAFNVGFFVLFLPFRR 9653
Range 21: 9556 to 9660 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 32/35(91%) | 0/35(0%) | Plus/Minus |
Query 921 RSAA*KAKIKQRNLH*RLHTKRKNLWRSAKITYVI 1025 + AA*KAKIKQRNLH*RLHTKRKNLWRSAK+TYVI Subject 9556 KRAA*KAKIKQRNLH*RLHTKRKNLWRSAKVTYVI 9660
Nucleotide Sequence (355 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
264.1 | 1452.0 | 34% | 3.851e-70 | 90% | NC_004667 | |
127.9 | 127.9 | 33% | 3.658e-29 | 45% | NC_022072 | |
95.1 | 95.1 | 28% | 2.865e-19 | 38% | NC_016509 | |
70.0 | 70.0 | 18% | 1.035e-11 | 40% | NC_029783 | |
51.2 | 78.8 | 24% | 7.771e-09 | 35% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 11209 to 11562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.1 bits(570) | 0.0 | 106/118(90%) | 0/118(0%) | Minus/Plus |
Query 1 WTL*RIR*RTGWWIFSRW*FSRRVVQYPVHILIDAQWVVGMWYSVYLKGRITGLF*MNRRAGAYRNVGETQWRPTWRSLISPRTDRCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE 354 WTL*RIR*RT W+FSRW*FSR+VVQYPVHILID QWVV MWY+VYLKGRIT LF*M+RR+GAYRNVGETQ RPTWRSLISPRT+RCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE Subject 11209 WTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE 11562
Range 2: 11208 to 11561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.9 bits(563) | 0.0 | 107/118(91%) | 0/118(0%) | Plus/Minus |
Query 2 SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLHWVSPTFRYAPARRFI*KSPVILPFKYTEYHIPTTHCASMSI*TGYWTTLRENYHRLKIHHPVR*RIR*SVH 355 SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGL+WVSPTFRYAP RR I*KS VILPFKYT YHI TTHC SMSI*TGYWTT RENYHRLK H+ VR*RIR*SVH Subject 11208 SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVH 11561
Range 3: 11208 to 11561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.4 bits(562) | 0.0 | 109/118(92%) | 0/118(0%) | Minus/Plus |
Query 2 VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVSKRRGDPVEADVAQFNLSTDGSVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR 355 VDTL NTLTD VV QPVVIFPKGSPIPCSYTHR TVGGGDVV+GIFEGENNRAFLNEPT RGVSKRRGDPVE DVAQFNLSTDG+VSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR Subject 11208 VDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR 11561
Range 4: 11209 to 11562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.5 bits(525) | 0.0 | 109/118(92%) | 0/118(0%) | Plus/Minus |
Query 1 LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPIRPWRD*TAPRRPPLGLPYVSIRPGTSVHLEKPCYSPLQIYRIPHPHHPLCIYEYMNRVLDYPSGKLXXXXXXXXXXLAYSLKCP 354 LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTP RPWRD*TAPRR LGLPYVSIRPGTS HLEK CYSPLQIYRIPH HHPLCIYEYMNRVLDY SGKLPPAE+P PRPLAYSLKCP Subject 11209 LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCP 11562
Range 5: 11210 to 11560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.8 bits(458) | 0.0 | 106/117(91%) | 0/117(0%) | Minus/Plus |
Query 3 GHFSEYXXXXXXXXXXXXXFPEG*SNTLFIYS*MHSGWWGCGIRYI*RGE*QGFSK*TDVPGRIET*GRPSGGRRGAV*SLHGRIGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE 353 GHF+EYANGRG G SAGGNFPE *SNTLFIYS*+HSGWW CGIRYI*RGE*Q FSK* DVPGRIET*GRPS RRGAV*SLHGR GVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE Subject 11210 GHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE 11560
Range 6: 11210 to 11560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 108/117(92%) | 0/117(0%) | Plus/Minus |
Query 3 LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTDPSVERLNCATSASTGSPLRFDTPRHVGSFRKALLFXXXXXXXXXXXXXXVHL*VYEQGIGLPFGKITTG*KSTTPSVSVFAKVS 353 LPDL*TNESSTFVVPGTRYSFFTSSPLTITDT PSVERLNCATS STGSPLRFDTPR+VGSFRKALLFSPSNIP TTSPPPTV+L*VYEQGIGLPFGKITTG*+ TT SVSVF KVS Subject 11210 LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKITTG*RPTTSSVSVFVKVS 11560
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 12176 to 12529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.9 bits(274) | 0.0 | 53/118(45%) | 0/118(0%) | Minus/Plus |
Query 2 VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVSKRRGDPVEADVAQFNLSTDGSVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR 355 VDTL N+L+D VV+F+P ++FPKG+PIPCSYT +V +VV+G++EGE NR++LNE T R + D +++LS DG++SV +NG+ NE+ +NV+ S Y +GR Subject 12176 VDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGR 12529
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10993 to 11295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.1 bits(202) | 0.0 | 38/101(38%) | 0/101(0%) | Minus/Plus |
Query 53 VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVSKRRGDPVEADVAQFNLSTDGSVSVIVNGEEVKNEYL 355 +DT++ TL+D + F +VIFPKG PIP Y + G + +GI EGE+NR +LNE +G R + ++D ++ +S DG + + V+G ++KN L Subject 10993 IDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL 11295
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 11408 to 11602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.0 bits(147) | 0.0 | 26/65(40%) | 0/65(0%) | Minus/Plus |
Query 161 VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPTCRGVS 355 +D+L+ TL+D + F+ ++FPKG+ IP ++ TVG +V +G++EGE N +LN+ T +GV+ Subject 11408 IDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA 11602
Range 1: 10447 to 10626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.2 bits(106) | 0.0 | 21/60(35%) | 0/60(0%) | Minus/Plus |
Query 176 VDTLANTLTDGVVDFQPVVIFPKGSPIPCSYTHRCTVGGGDVVFGIFEGENNRAFLNEPT 355 VDTL++ + D +V + V+ KG +P + GG++ ++EGE+ AF+NEPT Subject 10447 VDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPT 10626
Nucleotide Sequence (435 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 16164 to 16562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 115/133(86%) | 0/133(0%) | Minus/Plus |
Query 6 CGILNDLKWEESNKEKFKGRDILDTYILSSDYPGFK*GYFRSAILS*GCQSRLKRTITWF*YL*RKRL*TITTPLLPMRVPY*ATFAKV*GIFS*PGVVRKTPAVS*RP*SLI*SVR*R*KQLEALSET*YSS 404 CGILNDLKWEESNKEKFKGRDILDTY+LSSDYPGFK* FRSAILS*GCQSRL+RTITWF*YL*R+RL*TITTPL PMRVPY* T AKV* IFS*PG VRK PA S*R *SL SVR R*KQ E LSET*YSS Subject 16164 CGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*YL*RRRL*TITTPLSPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSS 16562
Range 2: 16168 to 16560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.3 bits(516) | 0.0 | 109/131(83%) | 0/131(0%) | Minus/Plus |
Query 8 GY*MI*SGKRATRKNLRGETY*IPTSYRLITQGLNEVTFAPLSYLEVVKVA*NERSPGFDTYKGSAYKLLQRLFYR*ECRTKRLSRKYREFSHSQV*FAKLLPCHEGLDH*YSL*GDDRNS*KLYRRLNTR 400 GY*MI*SGKRATR+NLRGETY*I T YRLI QGLNEV FAPLSYL+VVKVA*NERS GF+TYKG AYKLLQRLF+R* CR KRLSRKYREFS SQV FAK LP HEG DH*+SL* DRNS K YRRLNTR Subject 16168 GY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTR 16560
Range 3: 16159 to 16344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 53/62(85%) | 0/62(0%) | Plus/Minus |
Query 224 KTR*SFVLSDFDNLKIR*RSESNLI*TLGNQTIRCRYLICLSP*IFPCCSLPTSNHSISRTT 409 KT+*SFVLSDFDNLKIR*RSESN I*TL NQTI+ +YL+CLSP*I PCCSLPTSNHSIS TT Subject 16159 KTK*SFVLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISHTT 16344
Range 4: 16378 to 16560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 52/61(85%) | 0/61(0%) | Plus/Minus |
Query 8 TSIKSPIKLLAVSIVTLQTILVIKAFMTRQEFCELHLAMRKFPILSRKSLSTALSSVKEAL 190 TSIKSPIKLLAVSI LQT+LVIKAFMTRQEFCE HLA RKF ILSR+SL+TA SSVKEAL Subject 16378 TSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL 16560
Range 5: 16322 to 16561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.7 bits(351) | 0.0 | 70/80(88%) | 0/80(0%) | Minus/Plus |
Query 7 KTNDHLVLILIKEALINYYNASFTDESAVLSDFRESIGNFLIARCSSQNSCRVMKALITNIVCKVTIETARSFIGDLILV 246 +TNDHLVLILIKEALINYYNASFTDE AVL D RESI NFL+ARC SQNSCRVMKALITN VCK++IETARSFIGDLILV Subject 16322 RTNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILV 16561
Range 6: 16160 to 16273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 32/38(84%) | 0/38(0%) | Minus/Plus |
Query 295 VVRDIE*FEVGREQQGKI*GERHIRYLHLIV*LPRV*M 408 VV DIE*FEVGREQQG+I*GERH RYL IV*L RV*M Subject 16160 VVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*M 16273
Range 7: 16235 to 16561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.3 bits(444) | 0.0 | 90/109(83%) | 0/109(0%) | Plus/Minus |
Query 7 DEY*VSDKASSCFYRHLTDYISDQGLHDTAGVLRTTPGYEKIPYTFAKVA*YGTLIGKRGVVIVYKRFLYKYQNQVIVRFKRL*QPQDKIAERK*PHLNPG*SDDKM*V 333 DEY*VSDK S CFYRHLTD +SDQ LHD+AG+LRT PGYEKI YTFA+V+*YGTLIG+RGVVIVYKR LYKY NQVIVR KRL*QP DKIAERK HLNPG*SDDK *V Subject 16235 DEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V 16561
Range 8: 16167 to 16475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
198.6 bits(427) | 0.0 | 88/103(85%) | 0/103(0%) | Plus/Minus |
Query 93 GRSFANYTWL*ENSLYFRESRLVRHSHR*KRRCNSL*ALPL*VSKPGDRSF*ATLTTSR*DSGAKVTSFKPWVIRR*DVGI*YVSPLKFFLVALFPLQIIQYP 401 GR+FAN TWL ENSLYFRES L+RH HR*KRRCNSL*A PL*V KP DRSF*ATLTT R*DSGAK TSFKPW+IRR*+V I*YVSPLKF LVALFPLQIIQYP Subject 16167 GRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYP 16475
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Nucleotide Sequence (725 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
550.5 | 2593.7 | 33% | 6.4e-156 | 76% | NC_004667 | |
233.4 | 304.6 | 42% | 1.807e-60 | 43% | NC_016509 | |
345.2 | 549.4 | 40% | 3.989e-94 | 27% | NC_022072 | |
181.1 | 181.1 | 27% | 9.58e-45 | 39% | NC_029783 | |
128.4 | 128.4 | 26% | 6.98e-29 | 33% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 2079 to 2801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
550.5 bits(1195) | 0.0 | 231/241(96%) | 0/241(0%) | Plus/Plus |
Query 2 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSV 724 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVT RSLVP+FVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFE+ VGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFS+ VS YAKAMVHDNFNVLETL+SMP+AFI KVPGSV Subject 2079 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYAVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSNAVSVYAKAMVHDNFNVLETLMSMPRAFIRKVPGSV 2801
Range 2: 2079 to 2801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
462.0 bits(1002) | 0.0 | 195/241(81%) | 0/241(0%) | Minus/Minus |
Query 2 N*PRYFTNERFGHGYKRLQNVEIIVHHCLSVGGDYTRKTVTHGLKEELEDPGETPLTGFYKVIRANTLRPILNCLSHNGDD*TPHIIRRDIDLAVDDATPRNDMSLLRPDCPNAELECSILKRPYGVERVGIDPVDKIRIEDYRLEGHTRTSYNGYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLILKLKHVPG*SAYVRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL 724 N PRYFT+ER GH +KRLQNVE+IVHHCLS+ GD RKT+ +GLKEELEDPGETPLTGFYKVI ANTLRPILN LSHN D+*TPHIIRR+I+LAVD+ATP NDM LLRPD PN L+ SIL+ PY VERVGIDPVDK+RIEDY L+GHTRTSYN Y+HQRFAHERRDQ P R+L SR*LL PTHS+MMV TVSLIL LKHVPG SAY+RKGEKPAYVREGMFIHLTTLTNIVGQVITFPL Subject 2079 NRPRYFTDERSGHRHKRLQNVEVIVHHCLSIDGDCVRKTIAYGLKEELEDPGETPLTGFYKVIGANTLRPILNRLSHNSDN*TPHIIRRNINLAVDNATPCNDMGLLRPDRPNGILKRSILECPYSVERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPL 2801
Range 3: 2078 to 2557 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
341.5 bits(739) | 0.0 | 151/160(94%) | 0/160(0%) | Minus/Minus |
Query 1 KPHISSGEISTLLWTTRLPVMT*VFCDLTAPTPNSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF 480 KPHISSGEISTLLWTTRLPVMT VFCDLTAPT SNVLFSNVP+VLSA*E*ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL VTSVPGDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF Subject 2078 KPHISSGEISTLLWTTRLPVMTWVFCDLTAPTAYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLF 2557
Range 4: 2606 to 2800 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 60/65(92%) | 0/65(0%) | Minus/Minus |
Query 529 TDPGTLQMNALGMDISVSKTLKLSCTIALA*VETTLEKQSPTV*KKSLKTPARLPSLAFIKL*ER 723 TDPGTL+MNALG+DISVSKTLKLSCTIALA* ET EKQSPTV*KKSLKTPARLPSLAFIKL*ER Subject 2606 TDPGTLRMNALGIDISVSKTLKLSCTIALA*TETAFEKQSPTV*KKSLKTPARLPSLAFIKL*ER 2800
Range 5: 2078 to 2557 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
301.2 bits(651) | 0.0 | 130/160(81%) | 0/160(0%) | Plus/Plus |
Query 1 EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLRTHFIRERV*A*V*GIPLRLPSSYYV*GTEVTWNRGHA*VIGPDVRGQIVGVYTRCSWF*CVLQDDSPRFGFCRQDLFLRAQHHRDV*E*NIRVRRWGSQVAKDSCHYGESRRPQQGRYLSG*YVGF 480 EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL THF+RERV*A V*GIPL LPSS+YV*G+EVTWN G+ *V+GP VRGQI GV+T CSWF*CVL D+SPRFG CRQDLFLRAQH+RD+ E*N+ V RWG QVAKD CHY ESR PQQG Y S *YVGF Subject 2078 EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQHYRDIRE*NV*VCRWGGQVAKDPCHYRESRCPQQG*YFS**YVGF 2557
Range 6: 2609 to 2797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 54/63(86%) | 0/63(0%) | Plus/Plus |
Query 532 LL*LYKSQ*GESRRGLQALLSDRG*LFFECSLHLR*GNGAR*FQRFGDAYIHAQSVHL*STWV 720 LL*LYKSQ*GESRRGLQALLSDR LFFE SL L *GNGAR* QRFGDAY++AQSVH *STWV Subject 2609 LL*LYKSQ*GESRRGLQALLSDRRRLFFERSLRLC*GNGAR*LQRFGDAYVYAQSVHP*STWV 2797
Range 7: 2080 to 2328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 72/83(87%) | 0/83(0%) | Plus/Plus |
Query 3 RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLTYALHPGTCLSLSMRDTVAATIILLCVGHRSHLEPRSRVGHWSRRSWANRW 251 RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL YAL PGTCLS SMRDTV TII LCVG RSHLE R R+G WSRRSWANRW Subject 2080 RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRW 2328
Range 8: 2410 to 2802 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 100/131(76%) | 0/131(0%) | Plus/Plus |
Query 333 PTRSTP*GRLRIEHSSSALGQSGRKRLMSLRGVASSTARSISLRMICGV*SSPLWLRQLRIGRRVFALITL*KXXXXXXXXXXXXXXXPWVTVFRV*SPPTLRQWCTIISTFWRRLYPCPKRSFVKYLGQL 725 PTRST *G RIE S LG+SGRKR MSL+GVA STAR I L MICGV* S LWLR+LRIGRRVFA ITL*KPVRGVSPGSSSSSFRP VFR SP LRQWCTI STFWRRL CP+RS VKYLG L Subject 2410 PTRSTL*GHSRIERLSMPLGRSGRKRPMSLQGVALSTARLIFLLMICGV*LSLLWLRRLRIGRRVFAPITL*KPVRGVSPGSSSSSFRP*AIVFRTQSPSMLRQWCTITSTFWRRLCLCPERSSVKYLGLL 2802
Range 9: 2200 to 2556 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.0 bits(476) | 0.0 | 94/119(79%) | 0/119(0%) | Minus/Minus |
Query 123 NPTYHPERYRPCCGRRDSP**HESFAT*LPQRRTRMFYSQTSLWC*ARRNRSCRQNPNRGLSS*RTH*NQLQRV*TPTICPRTSGPMTYA*PRFQVTSVPYT**DDGSRNGIPHTQA*T 479 NPTYH E+Y+PCCG+RDS **H SFAT* PQR T+ FYS+ SL C*ARRNRSCRQ+PNRGL S*RTH*NQLQ+V*TP ICPRT+GP TY *P+FQVTS PYT**DDG+ NGIPHT A*T Subject 2200 NPTYHQEKYQPCCGQRDSL**HGSFAT*PPQRHTQTFYSRMSL*C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T 2556
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2660 to 3379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.4 bits(503) | 0.0 | 103/240(43%) | 0/240(0%) | Plus/Plus |
Query 5 REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSV 724 R+GD + Y VG G+ Y HS + FF + V+ SG+ F +EY GYR GYH ++C + + R + TF G SLV IP +A +SF+ + LDSDFVDR+YSY LNT F +RTFE+ V RSQKTHVI G+RVVH KV++SP++ WGLVVA+M QAI DR K+ +++ I+A G+L L + + F S ++ YA M+ + L+ L+ F+ VP +V Subject 2660 RKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYAVSCARSQKTHVIVGTRVVHDKVELSPEEQWGLVVALMIQAITDRKKAHVAHHSIEALRGNLWNCIVLIVRKLCSSFFSGMNEYALTMLQALGSNLDVLMDQNFRFVRTVPATV 3379
Range 2: 2884 to 3132 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 40/83(48%) | 0/83(0%) | Minus/Minus |
Query 229 PHISSGEISTLLWTTRLPVMT*VFCDLTAPTPNSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNV 477 PH SSG+ STL TTR+P +T VF T SNVL +N +VLS E STKSES+ I L + A +GI T P NV Subject 2884 PHCSSGDNSTLSCTTRVPTITCVFWLRAQDTAYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNV 3132
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2798 to 3511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
345.2 bits(747) | 0.0 | 140/238(59%) | 0/238(0%) | Plus/Plus |
Query 2 KREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVP 715 +R GD L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK EVTRR +V +F K++V IPV+ G+ +SFK++VLD+DFVDR+YSYALNT+ FE RTFE+ VGAVRSQKTHVITG+RVVHSKV+IS DDMWGLVVA+MAQA+KDR KS+ S++ IKAS G L + ++ V +S ++ Y K ++ DNF+VLE L++ PK I +VP Subject 2798 RRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYAVGAVRSQKTHVITGTRVVHSKVEISSDDMWGLVVAIMAQAVKDRLKSLESFSIIKASNGCLVSTINIIYRRVMKIVTSAMTGYFKGVIRDNFSVLELLVNNPKKLIVRVP 3511
Range 2: 2827 to 3276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 74/150(49%) | 0/150(0%) | Minus/Minus |
Query 31 KPHISSGEISTLLWTTRLPVMT*VFCDLTAPTPNSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PT 480 +PH+SS EISTL WTT +PV+T*VFCDLTAPT SNV S + V A E STKS S T LKD P+ TGI T N T VTS+ F V+ W*P PSYS+L T PD V V+ T E C Y SP PT Subject 2827 RPHMSSEEISTLEWTTLVPVIT*VFCDLTAPTAYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPT 3276
Range 3: 2930 to 3397 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 42/156(27%) | 0/156(0%) | Minus/Minus |
Query 134 HGLKEELEDPGETPLTGFYKVIRANTLRPILNCLSHNGDD*TPHIIRRDIDLAVDDATPRNDMSLLRPDCPNAELECSILKRPYGVERVGIDPVDKIRIEDYRLEGHTRTSYNGYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLIL 601 H + ++ +T + Y R +P+L+ LSH +*TPH++ R++ L +D N++S LR P+ L+ LK + V+ + I + ++ ++ RL+ H R+ + Y F +R + P +L L + ++VA V+LIL Subject 2930 HTAVDNIDRANQTTIRCLYDRERLQRFQPVLHSLSHYRHN*TPHVVGRNLHLRMDHPRTCNNVSFLRSHGPDGILKRPHLKVRHRVQGIRIHAIHEVSVKH*RLKRHVRSLQHRYHDNCFCGKR*NHHPPGNLLGSDFLTSRNR*VVVAYPVTLIL 3397
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 3198 to 3788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.1 bits(389) | 0.0 | 77/197(39%) | 0/197(0%) | Plus/Plus |
Query 5 REGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQ 595 R+GD L Y+VG G+ Y+HSF V T V S + EY GYRCGYHH+ M R + T GK++V P + FK I +D++FV R+Y+YALN TF RTFE+ + + RSQKT++I G+RV+HSKVDI D G+V+A++ +A++ R ++ +Y+ I+ S S+ L ++ Subject 3198 RKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYAMSSFRSQKTNIIVGTRVIHSKVDIEMGDEAGVVLAILIEALRSRRGAMNAYSKIELSTVSVRQFILLLWE 3788
Range 1: 1308 to 1874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 62/189(33%) | 0/189(0%) | Plus/Plus |
Query 20 LAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEFGVGAVRSQKTHVITGSRVVHSKVDISPDDMWGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKL 586 + Y +G G+ Y H + + T + V ++ G + + YEG R GY + + R+ S T T R + G +PV K + LD DFV+R+ SY LN RTFE+ V +RSQKTH+I GSR VHSKV+I + L ++ +++ R ++ + + +GSLAG+ L Subject 1308 VTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSYLLNVAAGVNERTFEYTVTNIRSQKTHLIVGSRTVHSKVEIDSTYLPILAAVLLTDSVRKRNLALGATKDFLSEKGSLAGMLHL 1874
Nucleotide Sequence (503 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 14513 to 14998 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
299.4 bits(647) | 0.0 | 120/162(74%) | 0/162(0%) | Minus/Plus |
Query 18 VSSSFMLVNSVGDYFECGLCHNKPYVGREVVFARKYIGGRGIEVTTGKNYTSNNWNESSYVINVTIKNGIARTVVNSSYTQTDVTGLPKDFNRIYKITKIVSVDSNLYPGCFSASKLDVMNIRSVSIQGKTIYFRDVLLKPLKKSFLALRETALGIDDSSLL 503 VSSSFML+N VGDYFECG+CHNKPY+GREV+F RKYIGGRG+E+TTGKNYTSNNWNE+SYVI V + +G+A+T VNS+YTQTDV+GLPK++ RIYKITKIVSVD NLYPGCFS SKL VM IRS+ + I+FRD+LLKPLKKSF A E L IDD+SLL Subject 14513 VSSSFMLMNDVGDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKKSFNARIEDVLNIDDTSLL 14998
Range 2: 14515 to 14997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 97/161(60%) | 0/161(0%) | Plus/Minus |
Query 19 NNDESSIPKAVSLKARKLFFSGFNSTSLKYIVLP*IETDLIFITSNLLAEKHPGYRFESTDTIFVILYILLKSLGSPVTSV*V*DELTTVRAIPFFIVTLITYDDSFQLFEV*FFPVVTSIPLPPIYFLANTTSLPT*GLLWHKPHSK*SPTLLTSINDDD 501 NND SSI S+ A FF GFN SLK + +DLI IT + +EK PG RF STDTIFVIL I ++ LG P+TSV V* ELT V A P T ITYD SFQLF+V*F PVV S PLPP+YFL TS P *GLL H PHSK*SPT SINDDD Subject 14515 NNDVSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SPTSFISINDDD 14997
Range 3: 14513 to 14881 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 52/123(42%) | 0/123(0%) | Plus/Minus |
Query 135 PYIHHVQFTCRKTSWVQVRIN*HYFCYFVYSIKILRQSCYVGLSIR*INHGSRYPVLYSHIDYIRRLVPIV*GVILPRGDFYSSTSDIFPSKHHFSPHIRFVVA*TAFKIVAYTINEHKRR*Y 503 PY H+ QF +T+ V+V I HY CYFV + I + V L I IN G P+ Y H+ Y+RRLVPIV V+L GD +SS + +FP++ +F + FVV A +++++ +++HKRR*Y Subject 14513 PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVISHVVHQHKRR*Y 14881
Range 4: 14515 to 14763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 37/83(45%) | 0/83(0%) | Minus/Plus |
Query 253 IIVVYAR**CRRLF*MRFMPQQTLCGERSGVC*EIYRR*RNRSHHGEELHLKQLERVVVCNQCDYKERDSANRG*FILYSDRR 501 IIVVYA RL +R + QQTL S + *EI+R R+ HH ELH++QLER VV N + S + *F LY++ R Subject 14515 IIVVYADERRGRLLRVRRVSQQTLLRTGSYLL*EIHRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR 14763
Range 5: 14796 to 14996 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 27/67(40%) | 0/67(0%) | Minus/Plus |
Query 20 TK*QK*CQLIRTCTQDVFRQVNWT**I*GPSLFKARRYTLETCY*SR*RKVS*P*GKRL*V*TTHHC 220 TK*Q+*C IRT T V + NW * +*G F +L Y*+ *R S + *+ TT C Subject 14796 TK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*RNRSTQESRMC*ILTTRRC 14996
Range 6: 14559 to 14762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 30/68(44%) | 0/68(0%) | Minus/Plus |
Query 254 NAVYATTNLMWGEKWCLLGNISEVEE*KSPRGRITPQTIGTSRRM*SM*L*RTG*REPWLIHLILRPT 457 +A TTN K +GN EE +SP R T +TIGT RR * * * G* P LI LI + T Subject 14559 SAACVTTNPT*DGKLSSVGNT*VGEEWRSPLVRTTRRTIGTRRRT*YK*T*SMG*HRPLLILLIRKRT 14762
Range 7: 14794 to 15000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 22/69(32%) | 0/69(0%) | Minus/Plus |
Query 16 IQNNKNSVS*FEPVPRMFFGK*IGRDEYKVRLYSRQDDIL*RRAIKAAEEKFPSLKGNGFRYRRLIIVA 222 +QNNK+SV EP+P +F G + YKV + +L* I+ EE Y R ++V+ Subject 14794 LQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIETFEEIVQRKNRGCAEY*RHVVVS 15000
Range 8: 14796 to 14882 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 14/29(48%) | 0/29(0%) | Plus/Minus |
Query 134 TLYSSRPIYLPKNILGTGSNQLTLFLLFC 220 TLY+ P+ +N G GS+ TL LLFC Subject 14796 TLYALHPVSSLRNNQGRGSDLRTLSLLFC 14882
Range 9: 14514 to 14675 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 20/54(37%) | 0/54(0%) | Plus/Minus |
Query 341 NCLRCNSSPW*LLFLYLRYIS*QTPLLSPHKVCCGINRIQNSRLHY*RA*TTMI 502 NC C+S W* L IS + L +VCC R +++ A*TTMI Subject 14514 NCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMI 14675
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 15448 to 15768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 32/107(30%) | 0/107(0%) | Minus/Plus |
Query 150 GDYFECGLCHNKPYVGREVVFARKYIGGRGIEVTTGKNYTSNNWNESSYVINVTIKNGIARTVVNSSYTQTDVTGLPKDFNRIYKITKIVSVDSNLYPGCFSASKLD 470 G + E + HN PYV RE + R+Y G E+ TG+N+T N+W+ES Y + +++ VN+ + +D+ G+ ++ I +VD+ +PG + S ++ Subject 15448 GKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPGKYDDSIIE 15768
Nucleotide Sequence (897 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
666.4 | 3612.0 | 31% | 0 | 88% | NC_004667 | |
503.3 | 1226.4 | 34% | 1.334e-141 | 28% | NC_022072 | |
388.7 | 821.2 | 52% | 4.061e-107 | 32% | NC_016509 | |
294.3 | 618.9 | 23% | 7.027e-84 | 30% | NC_029783 | |
141.3 | 463.4 | 16% | 3.759e-62 | 36% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 7117 to 8007 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
666.4 bits(1448) | 0.0 | 295/297(99%) | 0/297(0%) | Minus/Plus |
Query 2 SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTS 892 SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDR VTALFSCIFTACVERLKYVVDERWLFYHGMDTAELA ALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTS Subject 7117 SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTS 8007
Range 2: 7115 to 8008 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
641.6 bits(1394) | 0.0 | 276/298(93%) | 0/298(0%) | Plus/Minus |
Query 1 PTYQYLTAAD*I*GYHHH*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQXXXXXXXXXXXXEHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATFHPLHISNALRTQ*RCRRKAQLRVYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYKTST*TDERQTNLKPA*ETCKR*VPFCPTNLITTSCCWTNGFPSPLLNELC*RPPRRKSPSVHAPQSHHNPRYNRDRR*NSCSQTLPGCTLMCCASVNLH*T 894 PTYQY TAAD*I*GYHH *LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPP S*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATF PL I +ALRTQ*+C++KAQLR YRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYK ST*TDERQTNLKPA*ETCKR*VPFCPTNLITTSCCWTNGFPSPLLNELC*RPPRRKSPSVHAPQS HNPRYNRDRR*NS QT G T CCA VNL *T Subject 7115 PTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPPAS*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATFRPLRILSALRTQ*KCKKKAQLRTYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYKKST*TDERQTNLKPA*ETCKR*VPFCPTNLITTSCCWTNGFPSPLLNELC*RPPRRKSPSVHAPQSRHNPRYNRDRR*NSYFQT*RGYTSRCCALVNLR*T 8008
Range 3: 7114 to 8007 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
611.4 bits(1328) | 0.0 | 273/298(92%) | 0/298(0%) | Plus/Minus |
Query 2 RRINI*RLPTKYEAXXXXXXXXXXXXSPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQIVPQCNRQLRSVHPVVEEPPFIHYIFQTLYARSKDAGEKRSYASIVVDYILPRYVLRQWRIVQLGFYVCFHHKRIRRQHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRVITTHVTTAIGVEIPVLKRYQVAL*CVALR*TYTRP 895 RRINI RLPTKY+AIIT NYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHL HESTLRFVVLTDIQFIGVVLPDVPQIVPQC+RQLRSVHPVVEEPPF+HY+F LYARSK+A +KRSYA IVVDYILPRYVLRQWRIVQLGFYVCFHH+RIR QHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRV+TTHVTTAIGVEIP+ KR +V L VAL *TY RP Subject 7114 RRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLLHESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQLRSVHPVVEEPPFVHYVF*ALYARSKNARKKRSYAPIVVDYILPRYVLRQWRIVQLGFYVCFHHERIRSQHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRVVTTHVTTAIGVEIPIFKRDEVTLQGVALW*TYARP 8007
Range 4: 7116 to 8006 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
583.0 bits(1266) | 0.0 | 274/297(92%) | 0/297(0%) | Minus/Plus |
Query 3 V*CRFTEAQHIKVQPGNV*EQEFQRRSRL*RGL**LCGA*TEGDFLXXXXXXXXXXXGDGKPFVQQHDVVIRLVGQKGT*RLQVSQAGFRFVCLSSVYVDVLYAYGESRRKTQVGQYAIVEVRNGAEYSLPR*TRNCAFLLHLYCVRRAFEICSG*KVALLPRDGHCGVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHETGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*W***PHI*SAAVRY*YV 893 V* RFT+AQH++V P +V*+ EFQRRSRL*RGL* LCGA*TEGDFLRGGR*QSSFSRGDGKPFVQQHDVVIRLVGQKGT*RLQVSQAGFRFVCLSSVYVD LYA+GESRRKTQVGQYAIVEVRNGAEYSLPR* RNCAF LH YCVRRA +I SG KVALLPRDGHCGVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHE GGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS* ***P+I*SAAV Y*YV Subject 7116 V*RRFTKAQHLEV*PRHV*K*EFQRRSRL*RGL*RLCGA*TEGDFLRGGR*QSSFSRGDGKPFVQQHDVVIRLVGQKGT*RLQVSQAGFRFVCLSSVYVDFLYAHGESRRKTQVGQYAIVEVRNGAEYSLPR*VRNCAFFLHFYCVRRALKIRSGRKVALLPRDGHCGVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHEAGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YV 8006
Range 5: 7380 to 7670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 93/97(96%) | 0/97(0%) | Plus/Minus |
Query 339 V*YCRMSPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV*DVNIDG*KTNEPK 629 V*YCRMSPKLFLNA ANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVT LSW*TIFCPVTYFDNGVLSNLGFTSAFT+SV*+VNIDG*KTNEPK Subject 7380 V*YCRMSPKLFLNAAANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTHLSW*TIFCPVTYFDNGVLSNLGFTSAFTMSV*EVNIDG*KTNEPK 7670
Range 6: 7710 to 7931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 74/74(100%) | 0/74(0%) | Plus/Minus |
Query 78 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 299 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA Subject 7710 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 7931
Range 7: 7116 to 7340 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.5 bits(368) | 0.0 | 74/75(99%) | 0/75(0%) | Plus/Minus |
Query 669 SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD 893 SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHF VLRFGKPTLD Subject 7116 SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFKVLRFGKPTLD 7340
Range 8: 7968 to 8006 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 12/13(92%) | 0/13(0%) | Plus/Minus |
Query 3 DVSISNGCRLNMR 41 DVSISNGCRLN+R Subject 7968 DVSISNGCRLNIR 8006
Range 9: 7517 to 7930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
302.6 bits(654) | 0.0 | 131/138(95%) | 0/138(0%) | Minus/Plus |
Query 79 A*LRFSPASLLRA*SV*NM*WMKGGSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD 492 A*LRF A LLRA*S *N *W KGGSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*+RWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD Subject 7517 A*LRFFLAFLLRA*SA*NT*WTKGGSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*SRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD 7930
Range 10: 7115 to 7351 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 70/79(89%) | 0/79(0%) | Minus/Plus |
Query 658 GLV*VYRSATH*SATW*RLRTGISTPIAVVTWVVMTLWRMNXXXXXXXXSLTKLV*QR*RKAICPATRCCYQIGWTKGH 894 GL *VY+SAT *S T RL+ GISTPIAVVTWVV TLWRMN*RRFSSRRSLTKLV*QR*RKAICPATRCCYQIGWTKGH Subject 7115 GLA*VYQSATP*SVTSSRLKIGISTPIAVVTWVVTTLWRMN*RRFSSRRSLTKLV*QR*RKAICPATRCCYQIGWTKGH 7351
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 8181 to 9071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
503.3 bits(1092) | 0.0 | 223/297(75%) | 0/297(0%) | Minus/Plus |
Query 2 SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTS 892 S+VGLPKRNTLKCNLVTFENRNFNADRGCNVGCDD +A EL +F VV+ ++LA+V++ LSSN LL DWLDKR P AY+ LK L FVFHPS+L YTLMVKADVKPKLD+TPL KYVTGQNIVYHD VTALFSCIFTA VERLK+VV + W+FYHGMD LA + +LGDIR Y YELDISKYDKSQ++LMKQVEELILLTLGVD+EVL TFFCGEYDS+V +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG + Y+VVSGDDSLIFSR LDIDTS Subject 8181 SNVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDLMAEELVALFMRTVVDSSKLAQVSQDRLSSNEFLLGDWLDKRTPAAYRGLKGKLYDFVFHPSLLLKYTLMVKADVKPKLDDTPLYKYVTGQNIVYHDSCVTALFSCIFTAVVERLKFVVSDNWVFYHGMDIDSLAQRISADLGDIRAYTCYELDISKYDKSQASLMKQVEELILLTLGVDKEVLDTFFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTS 9071
Range 2: 8777 to 8992 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 50/72(69%) | 0/72(0%) | Plus/Minus |
Query 81 PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 296 PL+ TDNKV T +FPN V APPLRL* PTD TNS T LSYSPQK V KTSLSTP VK I+SSTCF+R Subject 8777 PLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSPQKNVSKTSLSTPRVKRISSSTCFIR 8992
Range 3: 8486 to 8728 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 47/81(58%) | 0/81(0%) | Plus/Minus |
Query 345 YCRMSPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV 587 Y MSP+ L A ++S+PW* + LS TT F ST AVK+ E +AVT S *T+F PVTY +GV SNLGFTSAFTISV Subject 8486 YALMSPRSALIL*ARLSISMPW*NTQLSLTTNFNLSTTAVKIHENNAVTHES**TMF*PVTYLYSGVSSNLGFTSAFTISV 8728
Range 4: 8180 to 8404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 39/75(52%) | 0/75(0%) | Plus/Minus |
Query 669 SNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD 893 SNQS + LL T A TT + +S A SS PTLQPRSALKFLFS VTRLH V FG PT D Subject 8180 SNQSPSRNSLLLNLSCDTCASFEESTTVRMNRATNSSAIRSSHPTLQPRSALKFLFSKVTRLHLRVFLFGSPTFD 8404
Range 5: 8736 to 8984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 35/83(42%) | 0/83(0%) | Plus/Minus |
Query 89 YYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFI 337 ++ QQG + + P V TT +PL +RQ LR H +I TTKE + IN + E +L HL H+ LR VVLT +QFI Subject 8736 HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLRG*RHQTVIFTTKERV*DLLINPQS*ENKLFHLLHQRRLRLVVLTYVQFI 8984
Range 6: 8394 to 8687 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 32/98(33%) | 0/98(0%) | Plus/Minus |
Query 386 QLRSVHPVVEEPPFIHYIFQTLYARSKDAGEKRSYASIVVDYILPRYVLRQWRIVQLGFYVCFHHKRIRRQHRRMKDKRT*SPLERLVSVRCPFVQPI 679 Q +H +V+ P H+ Q + +D ++R A I+++ +L VL Q ++QLG ++ HH RI +Q R+K++ L+ VS R P +QPI Subject 8394 QAVDIHAMVKHPVIAHHELQPFHHCREDTRKQRCDARIMINNVLTSDVLVQRCVIQLGLHISLHH*RIFKQ*TRVKNEIIELTLQTSVSCRSPLIQPI 8687
Range 7: 8178 to 8303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 21/42(50%) | 0/42(0%) | Plus/Minus |
Query 770 QFMRHRVITTHVTTAIGVEIPVLKRYQVAL*CVALR*TYTRP 895 Q +RH++IT H+ TAIG+EI +LK Y++AL V L + RP Subject 8178 QLLRHKIITPHIATAIGIEISILKSYEIALESVPLWKPHIRP 8303
Range 8: 8653 to 8862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 30/70(43%) | 0/70(0%) | Minus/Plus |
Query 211 GSSTTGWTLRSWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSM 420 G T W +W * I T T MNW VSTT+L+ L *+RW+S +S* LI + SFVV+M Subject 8653 GCFTMAWISTAWLRG*VRI*VT*ERTRVMNWT*VSTTSLKRL**SRWKSLFS*LWGLIRRS*TRSFVVNM 8862
Range 9: 8194 to 8295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 18/34(53%) | 0/34(0%) | Minus/Plus |
Query 778 YRSATH*SATW*RLRTGISTPIAVVTWVVMTLWR 879 ++ T SA * LR IS PIAV W VM LWR Subject 8194 FQRGTLSSAIS*LLRIEISMPIAVAMWGVMILWR 8295
Range 10: 8483 to 8611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 14/43(33%) | 0/43(0%) | Minus/Plus |
Query 462 LYAYGESRRKTQVGQYAIVEVRNGAEYSLPR*TRNCAFLLHLY 590 +YA GE + QVG + V+VR+ +E+ L R+ ++L+ Subject 8483 IYANGEG*CEAQVG*HTAVQVRHWSEHCLS*FVRHSVVFVYLH 8611
Range 11: 8888 to 8977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 12/30(40%) | 0/30(0%) | Minus/Plus |
Query 96 GIGVVCRLSEAQWWC*HVVGK*FSLVHLVV 185 G+ +V SEA+ WC H+V + ++LVV Subject 8888 GVSLVGWESEAKRWCEHLVREHSGALYLVV 8977
Range 12: 8206 to 8307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 17/34(50%) | 0/34(0%) | Plus/Minus |
Query 766 PSVHAPQSHHNPRYNRDRR*NSCSQTLPGCTLMC 867 P P HH P NRDR *N SQ L CT C Subject 8206 PPTPPP*DHHTPHCNRDRH*NFYSQKLRDCT*EC 8307
Range 13: 8485 to 8778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 27/98(28%) | 0/98(0%) | Plus/Minus |
Query 295 EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPTPQCPSRGRRATFHPLHISNALRTQ*RCRRKAQLRVYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AY 588 E E CRTY P+H C + P + P G+ ++ S *R + R + S RT T PTW SP AY Subject 8485 ETLETCRTYLCPIHNTCTLLCHLDPHLSSEPGCRYPCHGKTPSYRSPRTSTFPPLP*RYTKTTL*RTNHDKQCSDQ*RTCTAVCHPTWASHQPSPLAY 8778
Grapevine leafroll-associated virus 1, complete genome
Range 1: 7641 to 8525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
388.7 bits(842) | 0.0 | 176/295(60%) | 0/295(0%) | Minus/Plus |
Query 8 SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDID 892 S +G PKRN+LKCNLVTFE+RNFNADRGC+V D A EL +FF+ V+ ++LAE +S N + S WLD R+ A +SL L SFV+ S +T Y LMVK+D KPKLD+TPL +Y+TGQNIVYHDR +TA+FS IFT VERLKYV+ + L YHGM T + + + + LGD+ YY YELDISKYDKSQ A MK VE IL+ LGV V+ FFCGEYDSVV ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS+ L ID Subject 7641 SVIGRPKRNSLKCNLVTFESRNFNADRGCDVSSDPIAATELASLFFDTWVDGSKLAECVGDTISQNAVAASSWLDSRSSMAKQSLWARLRSFVYDLSAMTRYKLMVKSDAKPKLDSTPLQQYITGQNIVYHDRAITAMFSHIFTQAVERLKYVLHTKVLAYHGMSTEDFSREVGDRLGDVSGYYVYELDISKYDKSQGACMKDVERRILIGLGVSESVVDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQID 8525
Range 2: 7640 to 8176 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 78/179(44%) | 0/179(0%) | Plus/Minus |
Query 357 SPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV*DVNIDG*KTNEPKXXXXXXXXXXXXXSNQSDNNIVLLDKWLSVTSAKRALLTTSSKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD 893 SP L + S+V IPW +TYF ST VKM E AV LSW T+FCPV Y GV SN G S TIS+* V D T + K D A+ LLS+ D D SA T SK SS A S T P SALKFL SNVTRLHF + R G+P D Subject 7640 SPSLSPTSRLKSSVDIPWYAKTFVCSTYFNLSTACVKMCENIAVIALSWYTMFCPVMYCCKGVESNFGLASDLTISL*RVIADRS*TKDRKRAHNDCLAIEDLLSSHDDAATAFWDIVSPTHSASLLPSTQVSKNKLASSVAAIGSDETSHPLSALKFLLSNVTRLHFKLFRLGRPITD 8176
Range 3: 8234 to 8452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 38/73(52%) | 0/73(0%) | Plus/Minus |
Query 81 PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 299 P NKV +TK+FPNHV APP PTD T+SF ++TT SYSPQKK T TP I ST FM A Subject 8234 PFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTPRPIKIRLSTSFMHA 8452
Range 4: 7659 to 8105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 48/149(32%) | 0/149(0%) | Plus/Minus |
Query 428 IHYIFQTLYARSKDAGEKRSYASIVVDYILPRYVLRQWRIVQLGFYVCFHHKRIRRQHRRMKDKRT*SPLERLVSVRCPFVQPI**QHRVAGQMAFRHLC*TSFVNDLLEENLLQFMRHRVITTHVTTAIGVEIPVLKRYQVAL*CVAL 874 + +IFQ L KD + RSY+SI+V +LP VL R VQL F V +HK I R++ DKR + +RL+S R P ++P +H + G LC + +N +++ + + +T+ + +E+ LKR +V V L Subject 7659 MQHIFQPLDRLRKDV*KHRSYSSIMVHNVLPCNVLL*RRGVQLRFGV*LNHKLITSHCRQIVDKRPQTSPQRLLSHRRPAIEPRRRRHCILGYCVPDALCELTPINPGIKKQAGKLSSSDRVRRDITSPVCIEVSALKRDEVTFQTVPL 8105
Range 5: 8292 to 8441 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/50(36%) | 0/50(0%) | Plus/Minus |
Query 92 YGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQN 241 Y QQ ++ ++ PR+ T+ +PLR RQ++ + IIL+T+ES N Subject 8292 YRQQSHKNQSVP*PRICTSRSPLRPYRQNELVLPHRDHGIILSTEESIYN 8441
Range 6: 7904 to 8128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 31/75(41%) | 0/75(0%) | Minus/Plus |
Query 405 FRFVCLSSVYVDVLYAYGESRRKTQVGQYAIVEVRNGAEYSLPR*TRNCAFLLHLYCVRRAFEICSG*KVALLPR 629 F CL SV D L AYG RR+T+VG +A V A++ +P *+ NC HLY R EIC+ + +PR Subject 7904 FAVFCLRSVGNDSL*AYG*VRRQTEVGLHAFTAVHYRAKHCVP**SYNCDVFTHLYASGREVEICAAYESLSIPR 8128
Range 7: 7915 to 8127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 29/71(41%) | 0/71(0%) | Plus/Minus |
Query 406 RGRRATFHPLHISNALRTQ*RCRRKAQLRVYRGRLYSAPLRTSTMAYCPTWVLRLLSP*AYKTST*TDERQ 618 RG + HIS + *RC + +QL +Y G A T+ A+ PT V RL P*AY S TD RQ Subject 7915 RGMLRLSYAAHISTSRPLA*RCVKTSQL*LYHGTQCFAL*CTAVKAWSPTSVWRLT*P*AYNESLPTDRRQ 8127
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 7939 to 8700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
294.3 bits(636) | 0.0 | 134/254(53%) | 0/254(0%) | Minus/Plus |
Query 122 GLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN 883 G KRNTLKCNLVTFE+RNFNAD CNVG + +A + + E ++ R E + +S N + W +KR +KSL R VF + LT YTLMVKAD KPKLD + ++ YV GQNIVY D+ A FS IF ERLKYV + LF+ G A + LGDI QYY YELDISKYDKSQ+ LMK E +L LGV+ + L FF GEYDS V KEL LS+GSQRRSGGANTWLGN Subject 7939 GTKKRNTLKCNLVTFESRNFNADTTCNVGSANHIAERIAKFTAETFFDEGRYLECSGDAISQNRVAFGVWAEKREGPKWKSLLRECAKNVFDLTALTRYTLMVKADGKPKLDASVMTNYVAGQNIVYSDKVSIARFSHIFQQVAERLKYVCRGKVLFFCGSTIENFASEVEERLGDISQYYCYELDISKYDKSQAGLMKDTERALLSMLGVESDTLDMFFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGN 8700
Range 2: 8749 to 8820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 13/24(54%) | 0/24(0%) | Minus/Plus |
Query 2 YSYIVVSGDDSLIFSRQPLDIDTS 73 + ++ SGDDSLIFS++ LD+DT+ Subject 8749 FDLVLASGDDSLIFSKEKLDLDTT 8820
Range 3: 8526 to 8738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 32/71(45%) | 0/71(0%) | Plus/Minus |
Query 84 LSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 296 L + DN +KT +FPNHV APPL * P D NS + + T SYSP+K + + SLSTP++ + S F++ Subject 8526 LRSIDNSDNKTIVFPNHVFAPPLLR*LPIDKDNSLLCIETLESYSPEKNISRVSLSTPNILNNALSVSFIK 8738
Range 4: 8235 to 8480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 35/82(43%) | 0/82(0%) | Plus/Minus |
Query 342 *YCRMSPKLFLNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV 587 *Y +SPK + A ++ P S L TYFKRS KM E A+ LS TIFCP T S+LG SA T+SV Subject 8235 *Y*DISPKRSSTSDAKFSIVEPQKNSTLPLQTYFKRSATC*KMCENLAIDTLSEYTIFCPAT*LVITEASSLGLPSALTMSV 8480
Range 5: 7938 to 8030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 20/31(65%) | 0/31(0%) | Plus/Minus |
Query 792 SQPTLQPRSALKFLFSNVTRLHFNVLRFGKP 884 ++PTL SALKF S VTRLHF+VLRF P Subject 7938 AEPTLHVVSALKFRLSKVTRLHFSVLRFLVP 8030
Range 6: 8458 to 8709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 25/84(30%) | 0/84(0%) | Plus/Minus |
Query 113 D*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQ 364 D ISQPR+ T L +RQ QF + ++ KE + +++ + + + H + L VVL IQFI ++L + Q Subject 8458 DHRISQPRICPATPALTPNRQRQFFVVHRNA*VVFPGKEHIEGIALHA*HTQQRPFSVLH*ARL*LVVLGYIQFITIILRYIAQ 8709
Range 1: 5716 to 6252 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 68/179(38%) | 0/179(0%) | Minus/Plus |
Query 356 SSVGLPKRNTLKCNLVTFENRNFNADRGCNVGCDDSVAHELKEIFFEEVVNKARLAEVTESHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRRVTALFSCIFTACVERLKYVVDERWLFYHGMDTAELAVALRNNLGD 892 SS+G K N LK NLVT+E RNF +D G + C D A + + FF+ ++ +L+ ++ N + +WLDKR + ++ + + + + + LTS+ LM+K D KPKLD++ LS +GQNIVYH V ALFS IF VERL V+ +L GM E L + L + Subject 5716 SSIGSKKLNRLKQNLVTYEARNFVSDAGADRLCSDMTARRMVDNFFDNYIDYDKLSLEVPDQITFNKRSVGEWLDKRDGRRFNNVLKDMTTQMIPENDLTSFKLMLKTDSKPKLDDSVLSSVPSGQNIVYHRSSVNALFSHIFCQTVERLHRVLKRNFLLATGMSQDEFETYLNDGLNN 6252
Range 2: 6256 to 6489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 42/78(54%) | 0/78(0%) | Minus/Plus |
Query 122 IRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN 355 ++ + E+DISK+DKSQ L+KQ+EE++L LGVD EVL+ ++ EY+SV T K L +SV +QRR+GG+NTWLGN Subject 6256 VQNLFCSEVDISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGN 6489
Range 3: 6541 to 6603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 10/21(48%) | 0/21(0%) | Minus/Plus |
Query 8 SYIVVSGDDSLIFSRQPLDID 70 +++ SGDDSL+ SR P+ D Subject 6541 TFVCFSGDDSLVLSRDPIYFD 6603
Range 4: 6277 to 6480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 29/68(43%) | 0/68(0%) | Plus/Minus |
Query 131 PRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQF 334 PRV TT PLR R R+ A +LTT QN INT+ +Y L+LF++ TLRFV + F Subject 6277 PRVRTTCPPLRVYRNC*TFIERTAHAFVLTTIPPIQNLLINTQATKYHFLNLFYQRTLRFVKFRYVHF 6480
Range 5: 6021 to 6236 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 26/72(36%) | 0/72(0%) | Plus/Minus |
Query 372 LNATANSAVSIPW*KSHLSSTTYFKRSTHAVKMQEKSAVTRLSW*TIFCPVTYFDNGVLSNLGFTSAFTISV 587 L +NS+ IP L T ST KM E A T L W*TIF P+ ++ S+ G S F+I++ Subject 6021 LRYVSNSSCDIPVASKKLRFKTR*SLSTV*QKM*ENKAFTELRW*TIFWPLGTLESTESSSFGLESVFSINL 6236
Range 6: 5715 to 5855 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 20/47(43%) | 0/47(0%) | Plus/Minus |
Query 753 SKKISFSSCATESSQPTLQPRSALKFLFSNVTRLHFNVLRFGKPTLD 893 SKK+S A S P S KFL S VTR F L F P D Subject 5715 SKKLSTIRLAVISEHNLSAPASLTKFLASYVTRFCFKRLSFLLPIDD 5855
Range 7: 6315 to 6497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 27/61(44%) | 0/61(0%) | Plus/Minus |
Query 114 TKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 296 T + PNHV PP+ L T+ VL TLSYS KTS STP +S SS CF++ Subject 6315 TIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKRRSTISSICFIK 6497
Nucleotide Sequence (303 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
205.0 | 1166.4 | 29% | 1.821e-52 | 83% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 3109 to 3402 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.0 bits(441) | 0.0 | 87/98(89%) | 0/98(0%) | Minus/Plus |
Query 2 *LVGLRRRPFLALRRSFPQVHYSTTAV*LKMKGLMLWCAQRML*THRWAYWRRRV*L*AR**LDRKNFGVKFP*MTLLPLHCGIRCLLGFLWRLWVRP 295 *LVGLRRRPFLALRRSFPQVHYSTTAV*LKMKGLMLWCAQRML*THRWAYWRRR *L*AR *L+RKNFGVKFP*MT +CGIRCL G+ WRLWVRP Subject 3109 *LVGLRRRPFLALRRSFPQVHYSTTAV*LKMKGLMLWCAQRML*THRWAYWRRRA*L*ARS*LERKNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRP 3402
Range 2: 3102 to 3401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 87/100(87%) | 0/100(0%) | Plus/Minus |
Query 3 GRTQRRHKNPNKHLIPQCKGSKVIQGNFTPKFFRSSYYLAHSYTRRLQ*AHR*VYSILCAHQSIKPFIFS*TAVVE**TCGKERRNARKGLRRSPTSY*T 302 GRTQRRH+ P+KHLIPQ + +VI GNFTPKFFRSSY LAHSY RRLQ AHR*VYSILCAHQSIKPFIFS*TAVVE**TCGKERRNARKGLRRSPTSY T Subject 3102 GRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFFRSSYDLAHSYARRLQYAHR*VYSILCAHQSIKPFIFS*TAVVE**TCGKERRNARKGLRRSPTSYQT 3401
Range 3: 3103 to 3402 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 87/100(87%) | 0/100(0%) | Plus/Minus |
Query 2 GPHPKTPQKSQ*APYSAMQR**SHSRKLHSKILSIQLLPCSQLHATXXXXXXXXL*HSLCAPEHQAFHLQLNRGRRIVNLWKRTT*CQKRPSSQPHELLN 301 GPHPKTP+ S+*APYSA+++ *SH RKLHSKILS QL PCSQL ATSPV PPVSL*HSLCAPEHQAFHLQLNRGRRIVNLWKRTT*CQKRPSSQPHEL N Subject 3103 GPHPKTPRISR*APYSAIRKW*SHLRKLHSKILSFQLRPCSQLRATSPVCPPVSL*HSLCAPEHQAFHLQLNRGRRIVNLWKRTT*CQKRPSSQPHELPN 3402
Range 4: 3102 to 3401 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.8 bits(394) | 0.0 | 97/100(97%) | 0/100(0%) | Minus/Plus |
Query 3 GLVARGAATKAXXXXXXXXXXXXXFYDRGLTEDERLDALVRTENAINSPVGLLETSRVAVSKVVAGSKEFWSEVSLNDFTTFALRNKVLIGIFVASLGAA 302 GLVARGAATKAFSGITSFFSTGSLFYDRGLTEDERLDALVRTENAINSPVG+LETSRVAVSKVVAG+KEFWSEVSLNDFTTF LRNKVLIGIFVASLGAA Subject 3102 GLVARGAATKAFSGITSFFSTGSLFYDRGLTEDERLDALVRTENAINSPVGILETSRVAVSKVVAGTKEFWSEVSLNDFTTFVLRNKVLIGIFVASLGAA 3401
Range 5: 3101 to 3310 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.7 bits(351) | 0.0 | 65/70(93%) | 0/70(0%) | Minus/Plus |
Query 94 GFSSSWGCDEGLFWHYVVLFHRFTILRPRFN*R*KA*CSGAHRECYKLTGGLTGDVACSCEQGSSWIERI 303 GF SSWGCDEGLFWHYVVLFHRFTILRPRFN*R*KA*CSGAHRECYKLTGG TGDVA SCEQG SW ERI Subject 3101 GFGSSWGCDEGLFWHYVVLFHRFTILRPRFN*R*KA*CSGAHRECYKLTGGHTGDVARSCEQGRSWNERI 3310
Range 6: 3350 to 3403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 15/18(83%) | 0/18(0%) | Minus/Plus |
Query 1 IAE*GAYWDFCGVFGCGP 54 IAE*GAY D GVFGCGP Subject 3350 IAE*GAYRDIRGVFGCGP 3403
Range 7: 3212 to 3403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.6 bits(290) | 0.0 | 60/64(94%) | 0/64(0%) | Plus/Minus |
Query 1 GAAPKDATKIPISTLFRNAKVVKSFKETSLQNSFDPATTLLTATRDVSSKPTGEFIAFSVRTRA 192 GAAPKDAT IPISTLFRN KVVKSFKETSLQNSF PATTLLTATRDVSS PTGEFIAFSVRTRA Subject 3212 GAAPKDATNIPISTLFRNTKVVKSFKETSLQNSFVPATTLLTATRDVSSMPTGEFIAFSVRTRA 3403
Nucleotide Sequence (501 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
148.6 | 148.6 | 32% | 3.678e-35 | 39% | NC_016509 | |
298.9 | 935.2 | 21% | 2.086e-80 | 42% | NC_004667 | |
230.2 | 434.2 | 27% | 1.031e-59 | 30% | NC_022072 | |
136.2 | 136.2 | 31% | 1.949e-31 | 39% | NC_029783 | |
95.9 | 95.9 | 30% | 2.68e-19 | 33% | NC_009992 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2531 to 3004 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 61/158(39%) | 0/158(0%) | Minus/Plus |
Query 1 VLQVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALNT 474 V ++A+A++KK F++ LMFPIEL +G + + ++ VVR+GD + Y VG G+ Y HS + FF + V+ S + + +EY G R GYH F++C ++ R + TF G S+V +P + + F+ + LDSDFVDR+YSY LNT Subject 2531 VFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNT 3004
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1959 to 2426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.9 bits(646) | 0.0 | 121/156(78%) | 0/156(0%) | Minus/Plus |
Query 1 QVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALNT 468 QVAEAMDKKG L FDIALMFP+ELLYGNGEVYLE++DTLV REGD L YNVG CGE+Y HSF+NVSGFFT +YVR SS NV+KLEYEG RCGYHH TMCRAQK EVT RS+VP+F+GKS+VF+PVV G+ V FK++VLDSDFVDRIYSYALNT Subject 1959 QVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNT 2426
Range 2: 1958 to 2425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 108/156(69%) | 0/156(0%) | Plus/Minus |
Query 2 VLRA*E*ILSTKSESRTKDLKHTLVPSTTGKNTIDLPRNVGTMDLCVTSALCNF*ALHIVK*WYPHRQPSYSSLYTFLEEART*ALVKKPLTLAKEWT*TSPHMPTL*VNASPSRTTNVSTSSRYTSPFPYNNSIGNMRAISKARHPFLSIASATC 469 VL A*E*ILSTKSESRT LK TL P+TTG NT DLP N GT DL VTS +F*ALHIV+*W P R PSYSSL TF +E RT* VK PLTL KE + SPH PTL* SPS TNVS+SS+ TSP PYNNS GN+RA+SK PFLSIASATC Subject 1958 VLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATC 2425
Range 3: 1968 to 2423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 66/152(43%) | 0/152(0%) | Plus/Minus |
Query 4 VEGVRIDSVNKIRIQNQRLKAHLGPINNRQKHDRFTKKRGDNGPLRNLRALQLLSSAHREVMVPTPATLVLQLIHISRRSTDVGVGKEAAYVGEGMDINFSAHANIVS*RIPFPNYQRVDVL*VHLPISIQQFDREHEGYIKGQTPLLIHSL 459 VE V ID V+K+RI++ LK H NR +H RF +R D P+RNL + LLS H E+MV T +L+L L H+ RS + G++ AYV EGM I+ + NIV I FP +QR++ V+ +++QQ EH+ Y++ Q LLIHSL Subject 1968 VERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSL 2423
Range 4: 2201 to 2425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 36/75(48%) | 0/75(0%) | Minus/Plus |
Query 2 V*AGVRGLPVWVPSLHDVQSSKVAERGGYAKVHCPHVSW*IYRVFACC*WDQGVL*VXXXXXXFC*QNLFLRPQH 226 V*A V G+P+W+PS H V S+V GY V P V I V CC W VL* FG C Q+LFLR QH Subject 2201 V*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQH 2425
Range 5: 1969 to 2139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 24/57(42%) | 0/57(0%) | Minus/Plus |
Query 288 RLWIRRGVWPLI*PSCSRSNCCMEMGRCT*RTSTRW*FGKGMR*LTMLACAEKFMSI 458 RLWIRR W * CS +CC + T + S RW* GK + TML + M+I Subject 1969 RLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNI 2139
Range 6: 2200 to 2424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 32/75(43%) | 0/75(0%) | Plus/Minus |
Query 3 C*GRKNRFCQQNPNPEPKT*STPWSHQQQAKTR*IYQETWGQWTFA*PPRSATFELCTS*SDGTHTGNPRTPAYT 227 C* R+NR C+Q+PN +* T + QQ T I T G T+ *P T E T * DG H G P T A T Subject 2200 C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T 2424
Range 7: 1969 to 2139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 24/57(42%) | 0/57(0%) | Plus/Minus |
Query 288 NGHKLLRTCQHCKLTHPLPELPTCRRPLGTPPHFHTTIRSGT*GLYQRPDTPSYP*P 458 N H T QHC+ + LP PT R + TT GT* L ++P PSYP*P Subject 1969 NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCRKPAHPSYP*P 2139
Range 8: 2200 to 2424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 32/75(43%) | 0/75(0%) | Minus/Plus |
Query 3 CISWSTRVAGVGTITSRCAELKSCRARRLRKGPLSPRFLVNLSCFCLLLMGPRCALSLWFWIRILLTESILTPST 227 C+S S R V TI S C L+S RLR G S R N C LL + C L IR L T SI T ST Subject 2200 CLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCPLRQ*SSIRTLSTGSIPTRST 2424
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2678 to 3145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 91/156(58%) | 0/156(0%) | Minus/Plus |
Query 1 QVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALNT 468 ++AEA+D KG + FD+ M P+ELL G+GEVYLE++DT V R GD L Y+VG+CGE Y H F+ VS + T+AY R S VYK+EYEG R GYHH T+ R+QK+ + EVT+R +V +F K+IV +PV++GT + FKSLVLD+DFVDR+YSYALNT Subject 2678 ELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNT 3145
Range 2: 2683 to 2844 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 29/54(54%) | 0/54(0%) | Plus/Minus |
Query 302 SPHMPTL*VNASPSRTTNVSTSSRYTSPFPYNNSIGNMRAISKARHPFLSIASA 463 SP PT +N SP+R T VS SS+YTSP P ++S G+M+ SK PF S ASA Subject 2683 SPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASA 2844
Range 3: 2917 to 3144 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 36/76(47%) | 0/76(0%) | Plus/Minus |
Query 2 VLRA*E*ILSTKSESRTKDLKHTLVPSTTGKNTIDLPRNVGTMDLCVTSALCNF*ALHIVK*WYPHRQPSYSSLYT 229 V +A E STKS S T DLK VPS TG TI N T VTS + F* VK W P PSYS+L T Subject 2917 VFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*T 3144
Range 4: 2909 to 3142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 26/78(33%) | 0/78(0%) | Plus/Minus |
Query 4 VEGVRIDSVNKIRIQNQRLKAHLGPINNRQKHDRFTKKRGDNGPLRNLRALQLLSSAHREVMVPTPATLVLQLIHISR 237 V+G+RI +++++ +++ RLK H+ + +R + F KR ++ P NL L+S +R V+V P TL+L I R Subject 2909 VQGIRIHAIHEVSVKH*RLKRHVRSLQHRYHDNCFCGKR*NHHPPGNLLGSDFLTSRNR*VVVAYPVTLILHFIDSPR 3142
Range 5: 2684 to 2845 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 16/54(30%) | 0/54(0%) | Plus/Minus |
Query 301 FSAHANIVS*RIPFPNYQRVDVL*VHLPISIQQFDREHEGYIKGQTPLLIHSLG 462 FSA + V + ++ V +L*VHL + QQ +HE ++ P + G Subject 2684 FSAETHGVYQFVSSTSHAGVQLL*VHLTTTSQQLYGKHEAQVEDHHPFHVQRFG 2845
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 3075 to 3539 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 61/155(39%) | 0/155(0%) | Minus/Plus |
Query 4 QVAEAMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALN 468 +VA ++ KG FDI M P+EL+ +G +++++T+V R+GD LTY+VG G+ Y HSF V T V S Y EY G RCGYHH M ++ R I T GK+IV P + FK + +D++FV R+Y+YALN Subject 3075 EVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALN 3539
Plum bark necrosis and stem pitting-associated virus, complete genome
Range 1: 3041 to 3493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 50/151(33%) | 0/151(0%) | Minus/Plus |
Query 4 AMDKKGCLAFDIALMFPIELLYGNGEVYLEDVDTLVVREGDALTYNVGMCGEVYVHSFANVSGFFTNAYVRASSRNVYKLEYEGCRCGYHHFTMCRAQKLQSAEVTQRSIVPTFLGKSIVFLPVVDGTKVCFKSLVLDSDFVDRIYSYALN 456 AM+KKG + +A MF EL NG V REGD LTY VG GE YVHSF +S + ++ + + +Y +E GC Y FT+ + S T R K+++ DG + S+ +D DF R+ Y N Subject 3041 AMEKKGAVIAKVAFMFCPELALSNGTCSYPGAGVTVCREGDLLTYFVGDSGESYVHSFEVLSSYVSSERAMSEQKLLYSVELSGCYGPYVLFTVSITSDVMSKPTTSRVFPAWRRNKTLIKYVKYDGVRHHLNSIYVDRDFATRMLLYMSN 3493
Nucleotide Sequence (507 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 11661 to 12146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
372.7 bits(807) | 0.0 | 160/162(99%) | 0/162(0%) | Plus/Plus |
Query 8 GFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHRCLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYHAL*PNKL*ELGQVI*GFKRVFQDPN*R*DLCIAFCGQQSSKERQG*HHGSESTTIAIGRQ 493 GFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHR LGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYHAL*PNKL*ELGQVI*GFKRVFQDPN*R*DLCIAFCGQQSSKERQG*HHGSESTTIAIGR+ Subject 11661 GFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHRRLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYHAL*PNKL*ELGQVI*GFKRVFQDPN*R*DLCIAFCGQQSSKERQG*HHGSESTTIAIGRR 12146
Range 2: 11662 to 12144 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
370.8 bits(803) | 0.0 | 160/161(99%) | 0/161(0%) | Plus/Plus |
Query 9 GSRI*G*KKIF*NPP*IQIRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSDA 491 GSRI*G*KKIF*NPP*IQ RF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSDA Subject 11662 GSRI*G*KKIF*NPP*IQTRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSDA 12144
Range 3: 11661 to 12143 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.0 bits(716) | 0.0 | 159/161(99%) | 0/161(0%) | Minus/Minus |
Query 8 ASDGDXXXXXXXXXXXXXFGRLLSTERDA*ILPLIRVLKNALKSLDDLTQFSQFIGLESVVVNPPFNKKYAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRICIYGGFQKIFFYP*IREP 490 ASDGDSRRLASMMSSLSFFGRLLSTERDA*ILPLIRVLKNALKSLDDLTQFSQFIGLESVVVNPPFNKKYAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNR+CIYGGF KIFFYP*IREP Subject 11661 ASDGDSRRLASMMSSLSFFGRLLSTERDA*ILPLIRVLKNALKSLDDLTQFSQFIGLESVVVNPPFNKKYAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRVCIYGGF*KIFFYP*IREP 12143
Range 4: 11798 to 12142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 114/115(99%) | 0/115(0%) | Minus/Minus |
Query 145 RPMAIVVDSLP*CHPCLSLEDCCPQNAMHKSYL*LGS*KTRLNP*MT*PNSHSLLG*RAW*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRQRCTYYHDSKRSALPVQYIPYS 489 RPMAIVVDSLP*CHPCLSLEDCCPQNAMHKSYL*LGS*KTRLNP*MT*PNSHSLLG*RAW*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPR+RCTYYHDSKRSALPVQYIPYS Subject 11798 RPMAIVVDSLP*CHPCLSLEDCCPQNAMHKSYL*LGS*KTRLNP*MT*PNSHSLLG*RAW*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRRRCTYYHDSKRSALPVQYIPYS 12142
Range 5: 11654 to 11755 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 33/34(97%) | 0/34(0%) | Minus/Minus |
Query 1 SPLHKYIYPFKIVSVSTADFKKFSSILKSENPKS 102 SPLHKYIYPFKIVSVSTADFKKFSSILKSENP S Subject 11654 SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLS 11755
Range 6: 11935 to 12144 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 70/70(100%) | 0/70(0%) | Minus/Minus |
Query 282 GVRWR*SSTRFHDVIPVFLWKIAVHRTRCINLTFN*GPEKRA*ILR*PDPILTVYWVRERGSQSAFQQEI 491 GVRWR*SSTRFHDVIPVFLWKIAVHRTRCINLTFN*GPEKRA*ILR*PDPILTVYWVRERGSQSAFQQEI Subject 11935 GVRWR*SSTRFHDVIPVFLWKIAVHRTRCINLTFN*GPEKRA*ILR*PDPILTVYWVRERGSQSAFQQEI 12144
Range 7: 11659 to 11880 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 71/74(96%) | 0/74(0%) | Minus/Minus |
Query 6 SRVFPDNGVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKSYLYLRRISKNFLLSLNPRTP 227 SRVFPD+GVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKS LYLRRI KNFLLSLNPRTP Subject 11659 SRVFPDDGVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKSCLYLRRILKNFLLSLNPRTP 11880
Range 8: 11936 to 12145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 70/70(100%) | 0/70(0%) | Plus/Plus |
Query 283 ISC*KAD*LPRSLTQ*TVRIGSGHLRI*ARFSGP*LKVRFMHRVLWTAIFQRKTGMTSWKRVDDYRHRTP 492 ISC*KAD*LPRSLTQ*TVRIGSGHLRI*ARFSGP*LKVRFMHRVLWTAIFQRKTGMTSWKRVDDYRHRTP Subject 11936 ISC*KAD*LPRSLTQ*TVRIGSGHLRI*ARFSGP*LKVRFMHRVLWTAIFQRKTGMTSWKRVDDYRHRTP 12145
Range 9: 11720 to 11875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 51/52(98%) | 0/52(0%) | Plus/Plus |
Query 67 DFEWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTPLSGKT 222 DFEWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTP SGKT Subject 11720 DFEWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTPSSGKT 11875
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 12683 to 13096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 38/138(28%) | 0/138(0%) | Plus/Plus |
Query 75 MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSNPINCENWVRSSKDLSAFFRTLIKGKIYASRSVDSNLPKKDRDDIMEASRRLSPSD 488 MDK Y TG+ +EA E VV + + RGS T+V + S + S + A AYF L GG ++TL + + SKD+S K + + R+V + L + +++ +SP+D Subject 12683 MDKVCYATGLTAVSEAYAEYERVVGENLLEYSTFRIPVRGSTLTLVKSGNEILASYPSEGSTAERKAVAYFTLVGGFSSTLFTADVALSLLCGSKDISRTLERRHKKGLSSERAVHAALDQLQEVKLLQMIETVSPTD 13096
Nucleotide Sequence (1118 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
865.2 | 4386.9 | 31% | 0 | 83% | NC_004667 | |
519.3 | 1075.4 | 46% | 2.577e-146 | 25% | NC_022072 | |
287.9 | 396.0 | 15% | 8.715e-80 | 33% | NC_016509 | |
275.5 | 461.9 | 17% | 6.199e-73 | 25% | NC_029783 | |
80.8 | 197.9 | 21% | 3.931e-38 | 27% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1059 to 2174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
865.2 bits(1882) | 0.0 | 356/372(96%) | 0/372(0%) | Minus/Plus |
Query 3 RAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFS 1118 RAFV TTKGWCWFNNERLRGEIYRRRCFSSSFS+GFLM +GFRSLK +RFAGTNILH+PSLNEERTFGWK DVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKP+E+E+LRELFPELSIQFS+SVRSSHP ANAMRSCFNGIFSRRCG VCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFS Subject 1059 RAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFSIGFLMHLGFRSLKVIRFAGTNILHMPSLNEERTFGWKGGDVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPREREKLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGNVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFS 2174
Range 2: 1059 to 2174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
755.7 bits(1643) | 0.0 | 312/372(84%) | 0/372(0%) | Plus/Minus |
Query 3 RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILRFSTTVRYRL*SRFG*EVARHV*ISPSCGKKEDLIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSGWMTTPDRLGKLYRKLRKEFPQPLLFLWLQKHIAPV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIASDDSGFWDIGEINICALPPKGALFIERWYV*YVRARKPDGFQRSKAHAHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGSAHERP 1118 RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVHIHHKTR+ S IA+LRFSTTVR+RL*SRF *+V HV ISPSCGKKEDLIDSPLHIFNV*DW+AY+ VH+ASF++IREAPPNIEEA+ TTPPGKDS+ETAPHG+S W+TTPDR+G+LYRKL KEFPQ L F LQKHIAP+*GFFANHCVPLRKH+ QFRVQMGKQ RLVP YQ IGD RNDR*IDLLL+KGIGDGGQDLPSQPCPIASDDSGFWDIGEI++ ALPPKG LFIE W+V*YVRARKP+ RSKA HQETYRKGR*EATTSVNFSPQPLIVKPTPPFG A++RP Subject 1059 RKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVHIHHKTRIGSRIAVLRFSTTVRHRL*SRFS*KVTGHVRISPSCGKKEDLIDSPLHIFNV*DWIAYMTVHMASFDMIREAPPNIEEAHITTPPGKDSIETAPHGISEWVTTPDRVGELYRKLWKEFPQLLPFPRLQKHIAPM*GFFANHCVPLRKHIAQFRVQMGKQCRLVP*YQSIGDTRNDR*IDLLLIKGIGDGGQDLPSQPCPIASDDSGFWDIGEIDVSALPPKGTLFIE*WHV*YVRARKPNDL*RSKAKVHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRP 2174
Range 3: 1061 to 2176 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
725.0 bits(1576) | 0.0 | 348/372(94%) | 0/372(0%) | Plus/Minus |
Query 1 *EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALADG*LLLTDSENCIEXXXXXXXXXXXXXXXRNTSHLCEGFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPATIAVFGTLGR*TSALFHPKVRSSLSDGMCSMFVPANLTAFNDLKPMRIKKPTEKEDEKQRRXXXXXXXXXXXNQHHPLVVLTNA 1116 *EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S T+APFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT QFTWPALT*YVKLPPISKKHT PHL EKIPLKQLRMALA+G*LLLT+SENCIESSGKSSLS S S GFRNTSHLCEGFSRIIASL*EN+SHNFVSKWES ADWSLNTSLLV+LETTDE*TSS LRALATEAKISPPNRVLSPATIAVFGTLGR*TS FHPKVRSSLSDGMCSMFVPANL FNDLKP IKKP EKEDEKQRRL*ISPLSLSLLNQHHPLVV TNA Subject 1061 *EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT*QFTWPALT*YVKLPPISKKHTLPHLLEKIPLKQLRMALANG*LLLTESENCIESSGKSSLSFSLSRGFRNTSHLCEGFSRIIASL*ENISHNFVSKWESNADWSLNTSLLVILETTDE*TSS*LRALATEAKISPPNRVLSPATIAVFGTLGR*TSPPFHPKVRSSLSDGMCSMFVPANLMTFNDLKPRCIKKPIEKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNA 2176
Range 4: 1061 to 2176 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
677.8 bits(1473) | 0.0 | 314/372(84%) | 0/372(0%) | Minus/Plus |
Query 1 GVREHYQRVVLV*Q*EAEGRNLQTSLLLIFLFGRFLDAHGL*IVESRQVCGHEHTTHTIAQ*RAHLWVEERRCLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*PRGGLFICRFEHHQ*AGIEGPIGLAFPFGHEIV*HVFSKGRNDSRKTLTQVRCVSEATGKGEAEGTLSGAFDTVFRVGQE*SSIR*RHAELFQRNLFPEVWWCMLLRYWGELHVSR*SWPRELPRMQPSPRR*RCEAENQ*DPLSFHSWGRFIRV*RPPNRSGFKVCILL*SRIAELRFQS*RGFYGGCVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL 1116 GV H+QRVVLV*Q*EAEGRNLQTSLLLIFLF RFLDA L*IV+ VCGHEHTTH I Q*RA+LWVE RR LSPQCPKNRYRRWR*DTVGRGDLGLRRQCP* RGGLFI RFE+HQ* GI+GPIG+AFPFGHEIV +VFSKGRNDSRKTLT VRCVSEA GKGEAEGTLS AFDTV R+GQE*S IR* HAELFQ NLF EVW C+LLRYWGELHVS SWP EL MQ SPRR*RCEAENQ*DPLSFHSWGRF+RV P N SGFKVC+LL*SRIAELRF S GFYGGCVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL Subject 1061 GVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLFDRFLDAPWL*IVKGH*VCGHEHTTHAITQ*RAYLWVEGRRRLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*SRGGLFIGRFEYHQ*TGIKGPIGIAFPFGHEIVRYVFSKGRNDSRKTLT*VRCVSEAAGKGEAEGTLSRAFDTVLRLGQE*SPIR*CHAELFQWNLFQEVW*CVLLRYWGELHVSCQSWPCELSCMQSSPRR*RCEAENQ*DPLSFHSWGRFVRVQ*PSN*SGFKVCVLL*SRIAELRF*SRCGFYGGCVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFL 2176
Range 5: 1060 to 1959 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
580.7 bits(1261) | 0.0 | 251/300(84%) | 0/300(0%) | Plus/Minus |
Query 218 AAGIYRTHPP*NPRQLWNRNSAILDYSKIQTLKPLRLGGR*TRMNLPQLWKERGSH*FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PTRKTVSKAPERVPSASPFPVASETHRTCVRVFRESLRPFEKTCHTISCPNGKARPIGPSIPAYW*CSKRQMNRPPLG*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDKHLRSSTQRCALH*AMVCVVCSCPQT*RLSTI*SPCASRNLPKRKMRSNDVCKFLPSASHC*TNTTLW*CSRTP 1117 AAGIYRTHPP*NP +L NR+SAILDYSK QTLKPL+L G TR NLPQLWKERGSH*FSASHL*RLGL CI SS GQL* DT*SSPQYRRS H+HTS KRF *NSSAW *RM DYS*P+R+TVSKA ERVPSASPFP ASETHRT VRVFRESLRPFEKT TISCPNGKA PIGP IP YW* SKR MNRPPL *GHWRRRPRSPLPTVSYRQRR*RFLGHWGD+ LR STQR ALH* M CVVCSCPQT* TI*S ASRNL KRKMRSNDVCKFLPSASHC*TNTTLW C +TP Subject 1060 AAGIYRTHPP*NPHRL*NRSSAILDYSKTQTLKPLQLEGHWTRTNLPQLWKERGSH*FSASHL*RLGLDCIHDSSHGQL*HDT*SSPQYRRSTHYHTSWKRFH*NSSAWH*RMGDYS*PSRRTVSKALERVPSASPFPAASETHRTYVRVFRESLRPFEKTYRTISCPNGKAMPIGPLIPVYW*YSKRPMNRPPLD*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDRRLRPSTQRYALH*VMACVVCSCPQT**PLTI*SQGASRNLSKRKMRSNDVCKFLPSASHC*TNTTLWWCIQTP 1959
Range 6: 1999 to 2139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 41/47(87%) | 0/47(0%) | Plus/Minus |
Query 38 NVHTSHHTDQHCRPGNHLPSSLTYRVPPSKLRRYHTTAPRGT*ELNR 178 NVHTSHHTDQHCRPGNHLPSS TYRV PSKL RY TT PRGT*EL R Subject 1999 NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCR 2139
Range 7: 1060 to 1542 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.8 bits(720) | 0.0 | 139/161(86%) | 0/161(0%) | Minus/Plus |
Query 635 GRS*ALPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CAWALDR*KPSGLRARTYYTYHRSMKSAPLGGRAQMFISPMSQKPLSSLAIGHGWEGRSWPPSPMPLTKRRSIHLSFRASPIGWY*GTNRPCFPIWTRNCVTCFLKGTQ*FAKNPHTGAMCF*S 1117 GR A PKGGVGLTMRG*GEKFTDVVASHLPFR*VS*C ALDR*+ GLRARTYYT H SMKS PLGGRA+ ISPMSQKPLSSLAIGHGWEGRSWPPSPMPL KRRSIH SFR SPI WY*GTNR CFPIWTRNC CFLKGTQ*FAKNPH GAMCF*S Subject 1060 GRLYAPPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CTLALDR*RSLGLRARTYYTCHHSMKSVPLGGRAETSISPMSQKPLSSLAIGHGWEGRSWPPSPMPLIKRRSIHRSFRVSPIDWY*GTNRHCFPIWTRNCAICFLKGTQ*FAKNPHIGAMCF*S 1542
Range 8: 1771 to 2175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.5 bits(597) | 0.0 | 118/135(87%) | 0/135(0%) | Minus/Plus |
Query 2 KM*SGESMRSSFFPQLGEIHTCLATS*PKRLQSLYLTVVENRRIAIPELTRVLWWMCTIYPRSRWQRLWIRRVRWYSI*LLCSPWSCCMVTAKFTWRNSIR**RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL 406 KM*SGESMRSSFFPQLGEI TC T * KRLQSL LTVVENRR AI E RVLWWMCTIYPRSR QRLWIRRVRW+S *LLCSPWSCC VT KFTW+NSIR *RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL Subject 1771 KM*SGESMRSSFFPQLGEIRTCPVTF*LKRLQSLCLTVVENRRTAILEPMRVLWWMCTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFL 2175
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 1778 to 2887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
519.3 bits(1127) | 0.0 | 212/370(57%) | 0/370(0%) | Minus/Plus |
Query 9 RAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT 1118 R V ++GWCW+N RLR + R S ++ +M MG R ++ VR A H+ S E T + V L ++AGDR R G E+LASVANALNQEEVYSSVVS I NRL L+DQS+LL+HLD +LC+MF+QRDA+IREKP+HRCD LKP EK+ ++E FPEL+I F +SVRSSHP ANA+R CFN FS+RC V F DIGGS TYHVKAG VNCHVCNPVLDVKD+KRRI+E+L++++ G+ Y S+++++EAAS+S+SYCS SQ C R + G+MVDVYD+ ++AEA+D KG ++FDL M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T Subject 1778 RRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYTAKEVMDMGLRKVRMVRTAKVGFYHVVSKWELLTLRYPEKIVDLQTCRPVNVLAGDRVRAGNEVLASVANALNQEEVYSSVVSGIANRLALKDQSSLLAHLDNRLCEMFAQRDALIREKPNHRCDTMLKPSEKDMIKEAFPELTITFLDSVRSSHPVANAVRGCFNACFSKRCANVKFVDIGGSLTYHVKAGDVNCHVCNPVLDVKDMKRRISEMLYMTSGAGEVYKSTEIISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLT 2887
Range 2: 2305 to 2871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 97/189(51%) | 0/189(0%) | Plus/Minus |
Query 25 TLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALADG*LLLTDSENCI 591 T E C Y SP PT SP+ T VS+SSK TSPLP +SSTG+++ KS PF S ASA S TST+ P S L C+ Q*+ + +AAS S+ SP IS ILRF S TS TGL TWQFT PALT VKLPPIS T HL EK LK R ALA G*LLLT+S+N I Subject 2305 TRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASANSSNPRS*TSTMYPPSHLTEHSCEGVEQ*EMERDAASEIISVLL*TSPAPDVMYSISEILRFISFTSSTGLQTWQFTSPALTW*VKLPPISTNFTLAHLFEKQALKHPRTALATG*LLLTESKNVI 2871
Range 3: 2032 to 2247 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 39/72(54%) | 0/72(0%) | Plus/Minus |
Query 649 SHLCEGFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPA 864 SH GFSRI AS * N+SHN +S+ + D S + L + ETTDE*TSSWLRA AT+A+ S P SPA Subject 2032 SHRWLGFSRISASR*ANISHNLLSRCANNDD*SFSAKRLAIPETTDE*TSSWLRAFATDARTSLPALTRSPA 2247
Range 4: 2033 to 2515 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 61/161(38%) | 0/161(0%) | Plus/Minus |
Query 381 LIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSGWMTTPDRLGKLYRKLRKEFPQPLLFLWLQKHIAPV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIAS 863 L DSPLHI + +A +AVH+A FN++ +A PNI+E + + P + ++T VS MTTP + + KL K +L LQ +APV N + L +H+T ++M +Q L+ Q Q I D R+DR ++LLLVK + G Q+L + P I+S Subject 2033 LRDSPLHILYIQHGIANMAVHIAGFNMVGQASPNIDELHVSAPL*ETGIKTPADCVSNRMTTPH*I*ERNCKLWKSLLYHVLL*GLQHSVAPVVRLLTNKRIALSEHLT*SVIKMCQQR*LILQCQTISDPRDDRRVNLLLVKSVCYGRQNLIASPDAISS 2515
Range 5: 2612 to 2872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 22/87(25%) | 0/87(0%) | Plus/Minus |
Query 24 YVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILR 284 + R+ + I + T+ V Q ++ H ++ L V+ T QQL+G+H++ +E + L+ IV ++H + + A LR Subject 2612 HTRKFVRI*FSAETHGVYQFVSSTSHAGVQLL*VHLTTTSQQLYGKHEAQVEDHHPFHVQRFG*LVEPKIVDVNHVSPFTPNGAFLR 2872
Range 6: 2242 to 2472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 30/77(39%) | 0/77(0%) | Minus/Plus |
Query 424 VRCVSEATGKGEAEGTLSGAFDTVFRVGQE*SSIR*RHAELFQRNLFPEVWWCMLLRYWGELHVSR*SWPRELPRMQ 654 VR EA +G +G S A++ V R +E*SS *R +F EV + RYWG+L + *S ELP +Q Subject 2242 VRHYVEALREGHDKGGFSRAYNYVLRFSEE*SSCC*RSPRVF*CLFLKEVR*REVRRYWGKLDLPC*SRRCELPCLQ 2472
Range 7: 2034 to 2261 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 27/76(36%) | 0/76(0%) | Minus/Plus |
Query 635 LAIGHGWEGRSWPPSPMPLTKRRSIHLSFRASPIGWY*GTNRPCFPIWTRNCVTCFLKGTQ*FAKNPHTGAMCF*S 862 L I G R W P LT+RR S R S I W+* + C+ I + V C L + F ++ TGA *S Subject 2034 LEIASGLAMRFWRP*QTLLTRRRFTRRSSRGSLIVWH*RISHRCWHILITDYVRCSLSAMRLFVRSLTTGATLC*S 2261
Range 8: 2241 to 2507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 35/89(39%) | 0/89(0%) | Plus/Minus |
Query 389 FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PTRKTVSKAPERVPSASPFPVASETHRT 655 FSAS+ C GSS +L* S PQYRR+ TS + *N+ R*+ DDYS +T A E+ P + P AS RT Subject 2241 FSASYPLHPARDCKHGSSHRRL*HGRSSFPQYRRTSR*RTSLRNRH*NTRGLR*QQDDYSSLNLRT*L*ALEKPPLSCPSLRAST*CRT 2507
Grapevine leafroll-associated virus 1, complete genome
Range 1: 1922 to 2743 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.9 bits(622) | 0.0 | 121/274(44%) | 0/274(0%) | Minus/Plus |
Query 12 ILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFF 833 ++ASV+NALNQE+++ +VS+I NRLVL++ S L++HLD K+ ++F ++ + +K V L KE L FPEL I F +SV SSH NA+RSCFN +++ + GV F DIGGS YHV+ G +CH CNPVLD KD +RR E L L+TA +L + A+K+++YC +++ CD +A GFMVDVYD+ ++A+A++KK +F+L LMFP+EL +G + + EL V R+GD + Y VG G+ Y HS + FF Subject 1922 LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKKNKCVVTVALSAVAKESLTRAFPELFITFLDSVSSSHSLCNAVRSCFNSLYASKYRGVPFVDIGGSVAYHVRNGDKDCHCCNPVLDYKDCRRREEECLRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFF 2743
Range 2: 1688 to 1840 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 17/51(33%) | 0/51(0%) | Minus/Plus |
Query 945 KGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHI 1097 K WCW L G F S SV L RM ++K + NI H+ Subject 1688 KYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVKLEKTDEANIFHV 1840
Range 3: 2479 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 31/75(41%) | 0/75(0%) | Plus/Minus |
Query 52 SPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQ 276 SP PT+ SP T+ SS P SS GNI+ SN F S A A S TST+KP AL SQ Subject 2479 SPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFISFFSSACANSKTSKS*TSTMKPTGAL*SQ 2703
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 2463 to 3284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
275.5 bits(595) | 0.0 | 112/274(41%) | 0/274(0%) | Minus/Plus |
Query 9 LASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT 830 +AS++ AL E+V+ +VSS+ N++ L++ SA++ LD + + + ++ KPS + L EK L + FPEL ++F +SV SSHP NA+R CFN +FS + F DIGGS +YH+K G+VN H CNP +D KD KRR +E+L L L + ASK+ ++C ++++ C + +AGFMVDVYD+S +VA ++ KG FD+ M PVEL+ +G ++EL+T+V R+GD L Y+VG G+ Y+HSF V T Subject 2463 MASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPSVTINPSLTTTEKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMCFNALFSHNYKDIPFVDIGGSISYHIKHGNVNAHCCNPTVDAKDAKRRESELLTLRRESYGDATIQQLSSSVASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLT 3284
Range 2: 2708 to 2899 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 30/64(47%) | 0/64(0%) | Plus/Minus |
Query 394 RFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALADG*LLLTDSEN 585 RF SL S GL FT+P L * LPPIS L EK LK + AL G*L T S N Subject 2708 RFASLASTVGLQQ*AFTFPCLI**DMLPPISTNGMSL*L*EKRALKHILTALHIG*LEKTLSLN 2899
Range 3: 2975 to 3145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 24/57(42%) | 0/57(0%) | Plus/Minus |
Query 148 SSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEA 318 SSTG+I+ S P ++ AT SYTSTI PAS Q S +Q FEA Subject 2975 SSTGSIKTMSKVLTPLIAKLRATSYELRSYTSTINPASHFLVQHLVSFMQKVAVFEA 3145
Range 4: 3176 to 3286 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 17/37(46%) | 0/37(0%) | Plus/Minus |
Query 7 KVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSS 117 +V+ T KEC Y SP PTL* SP T V +S Subject 3176 QVRREKTF*KECWYESPVPPTL*VSRSPLRVTTVFNS 3286
Range 5: 2694 to 2897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 22/68(32%) | 0/68(0%) | Plus/Minus |
Query 396 LHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSGWMTTPDRLGKLYRKL 599 L +F V WV +++H+ ++I A I E K+ VET P+ V+ MT D + KL +L Subject 2694 LRVFGVHCWVTTMSIHIPVLDMIGYASSYIHEWDVLIIVRKEGVETHPYCVTHRMTREDTVLKLQFQL 2897
Range 6: 3042 to 3260 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 18/73(25%) | 0/73(0%) | Plus/Minus |
Query 33 EGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHK 251 +G+ + ++ ++ + + I + ++FL V+ +G+HK +E + HL+ IVHIHHK Subject 3042 KGVLV*ISRSSHTISEQIPLTRYNGVQFLNSVRPVSSY*FYGKHKDDVEGSHPFNSQTPSHLI*AQIVHIHHK 3260
Range 1: 1080 to 1379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 35/100(35%) | 0/100(0%) | Minus/Plus |
Query 9 SVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT 308 SVS CS + C A + +MVDVYDIS + + MDK + ++AL+ P EL+ +GEV ++ L+T+V+ + + Y +G G+ Y H + + T Subject 1080 SVSSCSARFEECSHPAFSAYMVDVYDISLLSLVDGMDKHKTVFTNVALILPAELIEESGEVDIQSLNTVVRWDHSTVTYFIGNTGDSYMHCRQTLVQYLT 1379
Range 2: 567 to 872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 28/102(27%) | 0/102(0%) | Minus/Plus |
Query 516 VANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHRCDVFLKPQEKERLRELFPELSIQFSESVRSSHPSANAMRSCFNGIF 821 + + LN E +Y ++ +T+RL ++ S L H+D+ L + +++ ++ K + + L FPEL I+++ S RS HP +R+ FN +F Subject 567 LVSCLNLETMYGELLKQVTSRLNFKENSDLFLHVDSSLKTLLKEKEDVLSHKFQCSISANIDQDARSILDSAFPELQIKYTTSSRSEHPMCYCVRTAFNALF 872
Nucleotide Sequence (822 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
617.4 | 3042.3 | 22% | 5.163e-176 | 75% | NC_004667 | |
328.9 | 463.1 | 37% | 3.812e-89 | 36% | NC_022072 | |
214.0 | 214.0 | 32% | 1.463e-54 | 35% | NC_016509 | |
145.1 | 176.3 | 21% | 3.225e-37 | 38% | NC_029783 | |
119.1 | 145.3 | 17% | 5.445e-28 | 42% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10833 to 11651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
617.4 bits(1348) | 0.0 | 264/273(97%) | 0/273(0%) | Plus/Plus |
Query 3 AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPKETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSN 821 AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVE VDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFD+TDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV QPVVIFPKGSPIPCSYTHRYTVG GDVVYGIFEGENNRAFLNEPTFRGVSKRRGDP ETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTR+NL N Subject 10833 AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRRNLGN 11651
Range 2: 11264 to 11650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.3 bits(612) | 0.0 | 123/129(95%) | 0/129(0%) | Minus/Minus |
Query 434 LLRFFLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVDKLNCATSVSFGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPLPTVYL*VYEQGIGLPFGKI 820 L RF LVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSV++LNCATSVS GSPLRFDTPRNVGSFRKALLFSPSNIPYTTSP PTVYL*VYEQGIGLPFGKI Subject 11264 LPRFLLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI 11650
Range 3: 10833 to 11033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.9 bits(323) | 0.0 | 60/67(90%) | 0/67(0%) | Minus/Minus |
Query 3 RVWIKVVKTGFEHFHSPSAEWRNNCV*FVASQIHILHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG 203 RVW+KVVKT FE+FHSPSAEW N+CV FVASQIH LHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG Subject 10833 RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG 11033
Range 4: 11073 to 11291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.9 bits(310) | 0.0 | 59/73(81%) | 0/73(0%) | Minus/Minus |
Query 243 GYWTTFRENYHRLKVHHLVR*RIRQSVHQSQSAITCQNITVNLSPTGYRTPKISIVEHNLRYLRQIGYITPDL 461 GYWTTFRENYHRLK H+LVR*RIR SVHQSQSAITCQ+I VNLSPT +RT KI VEH+ RYLRQI +ITPDL Subject 11073 GYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDL 11291
Range 5: 10831 to 11652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
489.1 bits(1061) | 0.0 | 233/274(85%) | 0/274(0%) | Minus/Minus |
Query 1 CYSGFSS*KPYRAKYSVWSSTLVLP*PLNLLSRIYRPTNLVRLLSRVPDIHSLLPHR*Q*QIPYRLWIN*IALRRSLLGLPYVSIRPGTSVHLEKPCYSPLQIYRTPHLHYPLCICECMNRVLDYLSGKLXXXXXXXXXPLAYSSKCPPVSVRYYLPKYHSKP*PHRLPNT*NQYCRTQP*ISAANWLHHS*P*LEHLTPQS*QQ*QGLDKSCQDRF*TLPQP*R*MAQQLRLVRR*SNXXXXXXXLRG*GVAL*RYC*TSLPSSRIRISLTWH 822 CY GFSS*KPYRAKYSVWSSTLVLP*PLNLLS+IYRP N VRLLSRVPDIHSLLPH *+*Q P+R W +* A RRSLLGLPYVSIRPGTS HLEK CYSPLQIYR PHLH+PLCI E MNRVLDYLSGKLPP E P PRPLAYS KCPPVSVRYYLPKY SKP*PH+ PN *N+YCRT+ *ISAAN HHS*P*LEHLTPQS*+Q* GL KSCQD+F* LPQP*R*M Q+LR VRR*SNP PPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH Subject 10831 CYPGFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P*LEHLTPQS*RQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH 11652
Range 6: 10961 to 11644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
409.8 bits(888) | 0.0 | 190/228(83%) | 0/228(0%) | Plus/Plus |
Query 131 NCCAIQR*GCGSVQNRS*QLLSRPCYCCYDWGVKCSS*GQE*CSQFAADI*GCVRQY*F*VFGSLWG*GLL*YFGR**RTETGGHFDEYANXXXXXXXXXXNFPER*SNTLFIHSQIHSG*WRCGVRYI*RGE*QGFSK*TDVPGRIET*GRPKRDRRSAI*FIHRRYGICYC*R*GSKE*ISGTRDNKRTRFVGL*IRERRFRG*GNTRVLDHTEYFAR*GFHEEKP 814 N C IQR*GCGS+QN S*QLL RP YC YDWGVKCSS*GQE*C FAADI* VRQY F*+FG LWG*GLL YFGR**RTETGGHF+EYANGRG G S GGNFPER*SNTLFI+S IHSG WRCG+RYI*RGE*Q FSK* DVPGRIET*GRP RDRR A+* +H R G+CY * *GSKE*ISGTRDNKRT F+GL*I ERRFRG*GNTRVLDHTEYFAR*GFHEEKP Subject 10961 NRCTIQR*GCGSIQNWS*QLLPRPGYCRYDWGVKCSS*GQE*CG*FAADI*SRVRQYRF*MFGGLWG*GLLRYFGR**RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKP 11644
Range 7: 10832 to 10909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 26/26(100%) | 0/26(0%) | Plus/Plus |
Query 2 CQVRDIRILDEGRLV*Q*RYNATPYP 79 CQVRDIRILDEGRLV*Q*RYNATPYP Subject 10832 CQVRDIRILDEGRLV*Q*RYNATPYP 10909
Range 8: 11266 to 11652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 110/129(85%) | 0/129(0%) | Plus/Plus |
Query 436 FSRKVVQYPVHTLTDTQWVVEMWCTVYLKGRITGLF*MNRRSGAYRNVGETQKRPT*RNLIYPQTVRYLLLLTVRK*RMNIWYPGQQTY*IRWSINPGEKI*RLRQYQST*PH*IFCTIRLSRGKT*VT 822 FSRKVVQYPVH L DTQWVVEMW TVYLKGRIT LF*M+RRSGAYRNVGETQ RPT R+LI P+T R LL L VRK*RMNIWYPGQQTY I WSIN GEKI*RLRQYQST*PH*IFCTIRLSRG+T VT Subject 11266 FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRGETWVT 11652
Range 9: 10831 to 11031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 60/67(90%) | 0/67(0%) | Plus/Plus |
Query 1 MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRMWI*LATN*TQLLRHSALGLWKCSKPVLTTFIQT 201 MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWR+WI*LATN TQ L HSALGLWK SK VLTTF QT Subject 10831 MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSKLVLTTFTQT 11031
Range 10: 11074 to 11205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 33/44(75%) | 0/44(0%) | Plus/Plus |
Query 244 RSGVM*PICRRYLRLCSTILILGVR*PVGLRFTVIFWQVIAD*D 375 RSGVM ICRRYL+ CST+ IL VR VGLRFT I WQVIAD*D Subject 11074 RSGVMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*D 11205
Range 11: 11343 to 11651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 89/103(86%) | 0/103(0%) | Minus/Minus |
Query 513 VTQVFPRESLIVQNIQCGQVLWYCLSL*IFSPGFIDQRI*YVCCPGYQIFILYFLTVNNNRYRTVCG*IKLRYVGLFWVSPTFRYAPERRFI*KSPVILPFKY 821 VTQV PRESLIVQNIQCGQVLWYCLSL*IFSP FIDQ I YVCCPGYQIFILYFLT+N+NR+R+V G IKLR+VGL+WVSPTFRYAPERR I*KS VILPFKY Subject 11343 VTQVSPRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKY 11651
Range 12: 10958 to 11197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 79/80(99%) | 0/80(0%) | Minus/Minus |
Query 128 PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXLDPPVITAITGSG*KLSRPVLNTSTALALNGATIA 367 PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA Subject 10958 PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA 11197
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11804 to 12583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
328.9 bits(715) | 0.0 | 134/260(52%) | 0/260(0%) | Plus/Plus |
Query 6 KLGIFVSSMKEDLSNNNAITQHLIPVEGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPKETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNIL 785 KL FVS++KED+SN+ ++ H++P G E V LT EL +VAPF+ +AV++F ++ F PD +AV+TGGSSALV+VR +A LP ++ VV+D DFRCSVACGAKVYCD L G LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT Y+V + +VVYG++EGE NR++LNE TFR + K TD +++LS DGT+SV +NG+ NE+ +NV+ S Y +GRED + + + EY LN + Subject 11804 KLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAELTEVVAPFAKKAVKIFSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGREDTQKEGVGEYCALLNAI 12583
Range 2: 11932 to 12159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 41/76(54%) | 0/76(0%) | Minus/Minus |
Query 134 LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXLDPPVITAITGSG*KLSRPVLNTSTALALNGAT 361 LP K SQ T AP ATEHLKS S TTL G A LT T+AL+PPV TA SG LS TA NGAT Subject 11932 LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSGRNLSIASEKIFTAFLANGAT 12159
Range 3: 12235 to 12357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 23/41(56%) | 0/41(0%) | Minus/Minus |
Query 437 NVGSFRKALLFSPSNIPYTTSPLPTVYL*VYEQGIGLPFGK 559 NV S R FSPS PYTT + T VYEQGIG P GK Subject 12235 NVSSLR*LRFFSPSYTPYTTLAVLTE*DVVYEQGIGFPLGK 12357
Range 4: 12394 to 12576 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 22/61(36%) | 0/61(0%) | Minus/Minus |
Query 596 FSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVDKLNCATSV 778 F+ +YS SSLP * + +TF S S PL +T +VPS DK SV Subject 12394 FNNAQYSPTPSFCVSSLPVE*DFDFTTFEGRVVLNSLTPSLPLIVTLSVPSSDKSYLTVSV 12576
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10624 to 11403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.0 bits(463) | 0.0 | 91/260(35%) | 0/260(0%) | Plus/Plus |
Query 9 LGIFVSSMKEDLSNNNAITQHLIPVEGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPKETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILH 788 L + ++ +KE + N + G+E + ++ DEL+A+ PF RA+++F G + P++ V+TGGS AL V+ + LP +S+ +D+ FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+ F +VIFPKG PIP Y + + + YGI EGE+NR +LNE F+G R + +++D ++ +S DG + + V+G ++KN L + + Y S + + Y+ + LH Subject 10624 LAVMIADLKEKICVNGGTQYTQVKTSNGLETLSMSVDELNAVSEPFVDRAIKIFAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRLPAPVSASAHAYRYVSSMKKYLIQLENNYVDMFSELH 11403
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 11114 to 11602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.1 bits(312) | 0.0 | 62/163(38%) | 0/163(0%) | Plus/Plus |
Query 84 EGGVEDVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTFRGVS 572 +G + T D+L + PF RAV++F + + P V+TGGS+AL + + ++ ++ V+++ FR SVA GAK+Y D+L S L L+D+L+ TL+D++ F+ ++FPKG+ IP ++ YTVG +V YG++EGE N +LN+ TF+GV+ Subject 11114 DGSRQIASYTLDQLISDSGPFLDRAVQMFSRLVRDLANPPTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA 11602
Range 1: 10273 to 10629 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.1 bits(255) | 0.0 | 53/119(45%) | 0/119(0%) | Plus/Plus |
Query 204 VIAVMTGGSSALVKVRSDVANLPQISKVVFDNTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGSGDVVYGIFEGENNRAFLNEPTF 560 V VM GGSSA+ +R VA + +VVFDN FR +VA GAKVY D L N GL LVDTL++ + DE+V + V+ KG +P + Y G++ ++EGE+ AF+NEPT+ Subject 10273 VNVVMVGGSSAIPLLRDAVATCRGVKRVVFDNNTFRIAVAVGAKVYSDSLVSNKGLVLVDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPTY 10629
Nucleotide Sequence (657 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 14423 to 14947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
387.8 bits(840) | 0.0 | 162/175(93%) | 0/175(0%) | Plus/Plus |
Query 5 RADFPGTQSLSVTLSIASNKLASGLMGNDAESSSFMLMNDAGDYFECGVCHNKPYLGREVIFCRKYLGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFKGFNKISLKKT 529 RADFP TQSLSVTLSIASNKLASGLMG+DA SSSFMLMND GDYFECGVCHNKPYLGREVIFCRKY+GGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFF+ LKK+ Subject 14423 RADFPNTQSLSVTLSIASNKLASGLMGSDAVSSSFMLMNDVGDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKKS 14947
Range 2: 14421 to 14915 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
375.9 bits(814) | 0.0 | 161/165(98%) | 0/165(0%) | Minus/Minus |
Query 3 *RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHLSISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*DLKLTYYWLSIT*LISFEFRESLLY 497 *RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHL ISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*DLKLTYYWLSIT*LISFE+ ESLL+ Subject 14421 *RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*DLKLTYYWLSIT*LISFEYWESLLF 14915
Range 3: 14419 to 14943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
364.4 bits(789) | 0.0 | 163/175(93%) | 0/175(0%) | Minus/Minus |
Query 1 FFRDILLKPLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPKYFLQKITSRPK*GLL*HTPHSK*SPASFISINDDDSASFPIRPEANLLLAIDNVTDKL*VPGKSALC 525 FF+ LKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPP YFLQKITSRPK*GLL*HTPHSK*SP SFISINDDD+AS PIRPEANLLLAIDNVTDKL*V GKSALC Subject 14419 FFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SPTSFISINDDDTASLPIRPEANLLLAIDNVTDKL*VLGKSALC 14943
Range 4: 14420 to 14914 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
333.3 bits(721) | 0.0 | 158/165(96%) | 0/165(0%) | Minus/Minus |
Query 2 EEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYXXXXXXXXXXXXLTSGDLHSSPT*VFPTEDNFPS*VGFVVTHAALEVISRVVHQHKRR*FCVVSHKT*S*LITGYR*RN**ALSSGKVCSM 496 +EDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPT VFPTEDNFPS*VGFVVTHAALEVIS VVHQHKRR*+CV SHKT*S*LITGYR*RN**ALS GKVCS+ Subject 14420 KEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVISHVVHQHKRR*YCVASHKT*S*LITGYR*RN**ALSIGKVCSL 14914
Range 5: 14593 to 14913 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 106/107(99%) | 0/107(0%) | Plus/Plus |
Query 175 TGSYLL*EILRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL 495 TGSYLL*EI RWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL Subject 14593 TGSYLL*EIHRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL 14913
Range 6: 14419 to 14538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 36/40(90%) | 0/40(0%) | Plus/Plus |
Query 1 T*SRLSRNSKLISYVIDSQ**VSFRSYGKRRRIIVVYADE 120 T SRLS+ SKLISYVIDSQ**VSFRSYGKRR IIVVYADE Subject 14419 TKSRLSQYSKLISYVIDSQ**VSFRSYGKRRSIIVVYADE 14538
Range 7: 14424 to 14654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.7 bits(351) | 0.0 | 73/77(95%) | 0/77(0%) | Plus/Plus |
Query 6 EQTFPELKAYQLRYR*PVIS*LQVLWETTQNHRRLC**TTREITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV 236 EQTFP LKAYQLRYR*PVIS*LQVLWE TQ HRRLC**TT EITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV Subject 14424 EQTFPILKAYQLRYR*PVIS*LQVLWEATQYHRRLC**TTWEITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV 14654
Range 8: 14709 to 14951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 72/81(89%) | 0/81(0%) | Plus/Plus |
Query 291 *SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSSKVSIRYP*RRRA 533 *SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASS +S *R R+ Subject 14709 *SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*RNRS 14951
Range 9: 14777 to 14941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 47/55(85%) | 0/55(0%) | Plus/Minus |
Query 493 LQRFQ*DIPKEDAHWGN*Q*PYTHYTQFRD*ETTNTEHPIYGH*LR*FVDTRPIF 657 LQRFQ*DIPKEDAHWGN*Q*PYTHYTQFR *ETT E IYGH L FVDTRPIF Subject 14777 LQRFQ*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIF 14941
Range 10: 14777 to 14944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 45/56(80%) | 0/56(0%) | Minus/Plus |
Query 490 KYWTCIYKLTQLVSVDRMLCIGCFSVSKLGVMRIRSLLVSPVRVFFRDILLKPLKK 657 K WT IYK+T++VSVD+ L GCFS SKLGVMRIRSLLVSPVR+FFRDILLKPLKK Subject 14777 KNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKK 14944
Range 11: 14781 to 14942 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 46/54(85%) | 0/54(0%) | Plus/Minus |
Query 492 SSKVSIRYP*RRRALGKLTVTLYALHPVSRLRNNQYRASDLRTLTALICRYTSN 653 SSKVSIRYP*RR ALGKLTVTLYALHPVS LRNNQ R SDLRTL+ L CRY SN Subject 14781 SSKVSIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASN 14942
Range 12: 14781 to 14942 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 47/54(87%) | 0/54(0%) | Minus/Plus |
Query 492 IGRVSTN*RS*CP*IGCSVLVVSQSRNWV*CV*GHC*FPQCASSLGISY*NL*R 653 IGRVST *+ *CP*I S LVVSQ+RNWV*CV*GHC*FPQCASSLGISY*NL*R Subject 14781 IGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*R 14942
Range 13: 14782 to 14943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 45/54(83%) | 0/54(0%) | Minus/Plus |
Query 491 LDVYLQINAVSVRRSDALYWLFLSLETGCNAYKVTVSFPSARLL*GYLIETFEE 652 LD YLQ N SVRRS+ L WLFL LETGCNAYKVTVSFPSA LL*GYLIETFEE Subject 14782 LDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIETFEE 14943
Range 14: 14779 to 14943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 43/55(78%) | 0/55(0%) | Plus/Minus |
Query 491 FFKGFNKISLKKTRTGETNSDLIRITPSFETEKQPIQSIRSTDTNCVNL*IHVQY 655 FFKGFNKISLKK RTGETNSDLIRITPSFE+EKQP STDT V L*I VQ+ Subject 14779 FFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQF 14943
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 15397 to 15759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 35/121(29%) | 0/121(0%) | Plus/Plus |
Query 77 LMGNDAESSSFMLMNDAGDYFECGVCHNKPYLGREVIFCRKYLGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDS 439 L ++ S + +G + E + HN PY+ RE I R+Y G E+ TG+N+T N+W+E+ Y ++++V VN+ + +D++G+ + I +VD +PG + DS Subject 15397 LQSGESLSCRIRFLAASGKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPGKYDDS 15759
Nucleotide Sequence (345 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 14546 to 14884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.1 bits(474) | 0.0 | 99/113(88%) | 0/113(0%) | Minus/Plus |
Query 2 GDYFECGVCHNKPYLGREVVFCRKYIGGRGVEITTGKXXXXXXXXXXXYVLHVDIVGGAAQTSVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSSPKLNVMLIRS 340 GDYFECGVCHNKPYLGREV+FCRKYIGGRGVEITTGKNY+SNNWNE+SYV+ V++V G AQT+VNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFS KL VM IRS Subject 14546 GDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRS 14884
Range 2: 14545 to 14883 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 99/113(88%) | 0/113(0%) | Plus/Minus |
Query 3 DLISITFSFGLEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTEVCAAPPTISTCNTYDDSFQLFDE*FLPVVISTPLPPMYFLQKTTSRPKYGLL*HTPHSK*SP 341 DLI IT SF EKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELT VCA P T TC TYD SFQLFD *FLPVVISTPLPPMYFLQK TSRPK GLL*HTPHSK*SP Subject 14545 DLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SP 14883
Range 3: 14546 to 14884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 97/113(86%) | 0/113(0%) | Plus/Minus |
Query 2 *PYKHYIQFRA*ETTRVEVLIYGHYLRYLVDTRPVFG*TTNVRLRISRIN*GLCRPTDYIHM*YXXXXXXXXXXXXXTSGDLHSSPTYVFPTEDDFPS*VRFVMTHAALEVIS 340 *PY HY QFR *ETTRVEVLIYGHYL Y VDTRP+FG*TTNVRLRISRIN GLC P DY+H+ YVRRLVP+VRRVVLTSGDLHSSPTYVFPTED+FPS*V FV+THAALEVIS Subject 14546 *PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVIS 14884
Range 4: 14541 to 14885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 95/115(83%) | 0/115(0%) | Plus/Minus |
Query 1 VTL*ALHSVSGLRNNQGRGSDLRTLSSLSCRYASSFWVDH*RPFAYK*N*LRSVPPHRLYPHVIXXXXXXXXXXXXXYQW*SPLLSHLCISYRRRLPVLSTVCYDTRRTRSNLPR 345 VTL ALH VS LRNNQGRGSDLRTLS L CRYAS+FWVDH*RPFAYK*N* SV HRL V+RTT RS+CST SSYQW*SPLLSHLCISYRR LPVLS VC DTRRTRSNLPR Subject 14541 VTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWSVLTHRLRSLVLRTTPRSNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPR 14885
Range 5: 14710 to 14883 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.7 bits(257) | 0.0 | 49/58(84%) | 0/58(0%) | Minus/Plus |
Query 3 SRWGGTDLS*FYLYANGR*WSTQKLDAYLQDNEDSVRRSEPLPWLFLKPETECNAYKV 176 SRW TD *FYLYANGR*WSTQKLDAYLQ+N+DSVRRSEPLPWLFL+ ET CNAYKV Subject 14710 SRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKV 14883
Range 6: 14541 to 14654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 34/38(89%) | 0/38(0%) | Minus/Plus |
Query 232 TREITSSAACVITNRT*DGKSSSVGNT*VGEEWRSPLV 345 T EITSSAACV TN T*DGK SSVGNT*VGEEWRSPLV Subject 14541 TWEITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV 14654
Range 7: 14697 to 14885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 50/63(79%) | 0/63(0%) | Minus/Plus |
Query 1 YMWI*SVGRHRPQLILLIRKRTLVVYPKTGRVSTR*RR*CP*IRTSTLVVSQARN*M*CL*GH 189 Y *S+G HRP LILLIRKRTLVVYPK GRVST+*+R*CP*IRTSTLVVSQ RN +*C+*GH Subject 14697 YK*T*SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GH 14885
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 15445 to 15744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 30/100(30%) | 0/100(0%) | Minus/Plus |
Query 44 AGDYFECGVCHNKPYLGREVVFCRKYIGGRGVEITTGKXXXXXXXXXXXYVLHVDIVGGAAQTSVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPG 343 +G + E + HN PY+ RE + R+Y G E+ TG+N++ N+W+ES Y L + + VN+ + +D++G+ + I +VD +PG Subject 15445 SGKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPG 15744
Nucleotide Sequence (449 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 12167 to 12571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
310.8 bits(672) | 0.0 | 132/135(98%) | 0/135(0%) | Minus/Plus |
Query 7 FR*GSMWT*RRI*KVRSCR*KLWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC*YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTLP 411 FR*GSMWT*RRI*KVRSCR*+LWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRT P Subject 12167 FR*GSMWT*RRI*KVRSCR*ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHP 12571
Range 2: 12169 to 12570 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
308.1 bits(666) | 0.0 | 131/134(98%) | 0/134(0%) | Plus/Minus |
Query 8 GSVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY*QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNF*RHDRTF*ILRYVHILPYL 409 G VLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHN *RHDRTF*ILRYVHILPYL Subject 12169 GCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPYQQIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPYL 12570
Range 3: 12178 to 12576 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
308.1 bits(666) | 0.0 | 131/133(98%) | 0/133(0%) | Minus/Plus |
Query 2 KYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGG 400 KYVDVTQNLESTIVPL+VMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYD+RVAWVYDVIATLKLVIRLFFNKDTPGG Subject 12178 KYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGG 12576
Range 4: 12165 to 12572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
307.6 bits(665) | 0.0 | 133/136(98%) | 0/136(0%) | Minus/Plus |
Query 6 GSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISASTETTSKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHSR 413 GSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISA TETTSKFFLR KSSLGI*RDRYAQAGHKIVFQQGH+R Subject 12165 GSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTR 12572
Range 5: 12177 to 12575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.1 bits(642) | 0.0 | 131/133(98%) | 0/133(0%) | Plus/Minus |
Query 3 PPGVSLLKNNLMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITFNGTIVLSKFCVTSTYF 401 PPGVSLLKNNLMTSLSVAITSYTQATL S*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISIT NGTIVLSKFCVTSTYF Subject 12177 PPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYF 12575
Range 6: 12164 to 12571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
293.4 bits(634) | 0.0 | 133/136(98%) | 0/136(0%) | Plus/Minus |
Query 7 RECPC*KTIL*PA*A*RSRHIPKLLLCRRKNLLVVSVLADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEP 414 R CPC*KTIL*PA*A*RSRHIPKLLL RRKNLLVVSV ADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEP Subject 12164 RVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEP 12571
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 13169 to 13516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 28/116(24%) | 0/116(0%) | Minus/Plus |
Query 17 IVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNK 364 +VPL + ++KR P VV +++ Y ++ + L D+ R + Y + +A++ + + ++ + L+R +P N +YD RVAW V + L I F + Subject 13169 VVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGR 13516
Nucleotide Sequence (786 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
307.6 | 1717.0 | 22% | 4.29e-83 | 50% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 16686 to 17093 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
307.6 bits(665) | 0.0 | 134/136(99%) | 0/136(0%) | Plus/Minus |
Query 2 NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LHKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVSAVVRFHLLVYLRKLASRNLRTPILDSPQTKY 409 NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**L KPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLV AVVRFHLLVYLRKLASRNLRTPILDSPQTKY Subject 16686 NV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKY 17093
Range 2: 16040 to 16117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 13/26(50%) | 0/26(0%) | Plus/Minus |
Query 390 ILPRQNIQISVFACPSPKNVQKRSAR 467 +L + + ISV ACPSPK V + AR Subject 16040 LLVKTSKNISVSACPSPKYVSR*PAR 16117
Range 3: 16685 to 17092 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.0 bits(583) | 0.0 | 132/136(97%) | 0/136(0%) | Plus/Minus |
Query 3 MFKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYISLHDVNLSLRIVYRCPXXXXXXXXXXXXXXXKCCHVIIVQGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNI 410 M KQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSY+SLHDVNLSLRIVYRCPARRIINAIIRVNQ+VKCCHVIIV+GGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNI Subject 16685 MSKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNI 17092
Range 4: 16688 to 17092 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 132/135(98%) | 0/135(0%) | Minus/Plus |
Query 3 ILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEXXXXXXXXXXXXXTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKH 407 ILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLL+H Subject 16688 ILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLRH 17092
Range 5: 16041 to 16097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 12/19(63%) | 0/19(0%) | Minus/Plus |
Query 410 RAERF*TFLGDGQANTDIW 466 RA T+LGDGQA+TDI+ Subject 16041 RAGYLETYLGDGQADTDIF 16097
Range 6: 16687 to 17094 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.7 bits(567) | 0.0 | 134/136(99%) | 0/136(0%) | Minus/Plus |
Query 1 YFVWGESRIGVRRFLEASLXXXXXXXXXXTALTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLCSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF 408 YFVWGESRIGVRRFLEASLRR*TRRWKRTTA TNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGL SYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF Subject 16687 YFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TF 17094
Range 7: 16687 to 16944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 83/86(97%) | 0/86(0%) | Plus/Minus |
Query 151 CGSFIAAQRVVSSTLLYALIKM*SAVTSLLYKAERICTIINDRSMML*PRDEISKCCSTFPPPCLPTQTSFKESTHPNPRFSPDKI 408 CGSFIAAQRVVSSTLLYALIK+*SAVTSLLY+AERICTIINDRSMML*PRDEIS+CCSTFPPPCLPTQTSFKESTHPNPRFSPDKI Subject 16687 CGSFIAAQRVVSSTLLYALIKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKI 16944
Range 8: 16999 to 17094 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 32/32(100%) | 0/32(0%) | Plus/Minus |
Query 1 ECLSKPLAMPTKHPTWS*AKAESILSMRIVLC 96 ECLSKPLAMPTKHPTWS*AKAESILSMRIVLC Subject 16999 ECLSKPLAMPTKHPTWS*AKAESILSMRIVLC 17094
Range 9: 16686 to 16940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 83/85(98%) | 0/85(0%) | Minus/Plus |
Query 155 IFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPCTIMT*QHFTF*LTRIIALMIRRAGQR*TI 409 IFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPP TIMT*QHFT *LTRIIALMIRRAGQR*TI Subject 16686 IFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFTL*LTRIIALMIRRAGQR*TI 16940
Nucleotide Sequence (769 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 417 to 1157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
505.6 bits(1097) | 0.0 | 221/247(89%) | 0/247(0%) | Plus/Plus |
Query 29 GCVWVVRGDGKKVLMEARXXXXXXXXXXXXXXXFEAVTHALIVVHYHRVVPFTPVKREQPKRAVKQDEQKPKRQASQWAVKPTAVGVHVPLPNKQEAPKPAQSVPQQSLEEKATLTFGLFFSKGGGDESGGVILRKGKLFNRALNVPINVKNTFVWAKIWDEASRRRGYFYVKDSIVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFS 769 G V +RGDGKKVLMEARTSTSA SD S +D VFEAV++AL+VVHYHRVVP+ PVKREQPK AVKQDEQKPKRQAS WAVKPTAVGVHVPLP KQEA +PAQSVPQQSLEEKA LTFGLFFSKGGGDES VILRKGKLFNRALNVPI+VKNTFVWAKIWDEASRRRGYFYVKD VKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFV TTKGWCWFNNERLRGEIYRRRCFSSSFS Subject 417 GSVSALRGDGKKVLMEARTSTSATSDVSDFDVVFEAVSNALLVVHYHRVVPYAPVKREQPKPAVKQDEQKPKRQASHWAVKPTAVGVHVPLPKKQEALEPAQSVPQQSLEEKAALTFGLFFSKGGGDESDAVILRKGKLFNRALNVPIDVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFS 1157
Range 2: 416 to 1156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
452.4 bits(981) | 0.0 | 216/247(87%) | 0/247(0%) | Minus/Minus |
Query 28 EKEDEKQRRXXXXXXXXXXLNQHHPLVVLTNALSRMLHNSIRGKATSHPGAVFTMKSSIVALPRTIGKNLTMLSLT*KYPLLREASSQILAQTKVFLTLIGTLRALLNNFPFRKMTXXXXXXXXXLKKRPNVRVAFSSNDCCGTDCAGFGASCLFGSGTWTPTAVGLTAHCDACRLGFCSSCLTARLGCSRLTGVNGTTRW*CTTINACVTASNTAS*LDASETAEVEVLASIKTFLPSPLTTQTHP 768 EKEDEKQRRL*ISPLSLSLLNQHHPLVV TNALSR+LHNS+RGKATSHPGAVFTMKSSIVALPRTIGKNLT LSLT*KYPLLREASSQILAQT VF T IGTLRALLNNFPFRKMT LSSPPPLLKKRPNV+ AFSSNDCCGTDCAG ASC GSGTWTPTAVGLTA CDACRLGFCSSCLTA LGCSRLTG GTTRW*CTT NA TASNT S D SE AEVEVLASIKTFLPSPL+ T P Subject 416 EKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILAQTNVFFTSIGTLRALLNNFPFRKMTASLSSPPPLLKKRPNVKAAFSSNDCCGTDCAGSSASCFLGSGTWTPTAVGLTAQCDACRLGFCSSCLTAGLGCSRLTGAYGTTRW*CTTSNALETASNTTSKSDTSEVAEVEVLASIKTFLPSPLSALTEP 1156
Range 3: 753 to 1157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 100/135(74%) | 0/135(0%) | Minus/Minus |
Query 365 RKGR*EATTSVNFSPQPLIVKPTPPFGSAHERPFAHAPQLYTW*GNITPWGRIHNEIFNCSPTPHDREELNNAILDIKISSPTRGFIPNFGPNKGVLNIDRNVKSPVEQLPFPQDDAAALIAPTFTEEKAKRQSG 769 RKGR*EATTSVNFSPQPLIVKPTPPFG A++RPFAH PQL GNITPWG IH+E+ + SPTPH+REE N++I D+KI SPTRGFIP+F PN+ VL I+RN+K PV+Q PFPQDD+ ALI PTFTEEKAKRQ G Subject 753 RKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSPNERVLYINRNIKGPVKQFPFPQDDSVALITPTFTEEKAKRQGG 1157
Range 4: 438 to 692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 61/85(72%) | 0/85(0%) | Minus/Minus |
Query 50 RKWYMDANSCWLNSPXXXXXXXXXXXLFDSPFRLLALDRGKRHYPVVVYNNQRMCYSFKHGVVTRRVGNCRS*GPRLHQNLLTIP 304 RKWY+DANSCWLNSP+*RLPFGLLLIL +S FRLLALD G RHYPVVVY+ + SF++ V R VG+C S*GP LHQ+LLTIP Subject 438 RKWYVDANSCWLNSPM*RLPFGLLLILLNSRFRLLALDGGIRHYPVVVYDK*CIRNSFEYDVEIRHVGSCGS*GPCLHQDLLTIP 692
Range 5: 532 to 1155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
334.6 bits(724) | 0.0 | 160/208(77%) | 0/208(0%) | Minus/Minus |
Query 144 KRKMRSNDVCKFLPSASHC*TNTTLW*CSRTPFRACSTTLYVVRQHHTLGPYSQ*NLQL*PYPAR*GRT*QCYP*HKNILSYERLHPKFWPKQRCS*H**ER*EPC*TTSLSAXXXXRSHRPHLY*RKGQTSEWPSPPTTVVEQIALVLVLPAYSEVVHGRQQLLA*QPIVTLAVWASAHLV*QPV*AARA*QG*TALPGGSVQQSTH 767 KRKMRSNDVCKFLPSASHC*TNTTLW C +TPFRA STT RQHHTLG YS+*+ + *PYPA+*GR *Q Y * KN LSYERLHP+F PK+ CS H *E * PC*T SLSAR*+RRSH PHLY*RKGQTS PSPPTTVV IAL VLP + EVV GRQQLLA*QP VTLAVWASAHL *QPV*AARA*+G TALPGGSV+Q H Subject 532 KRKMRSNDVCKFLPSASHC*TNTTLWWCIQTPFRAYSTTQCAARQHHTLGLYSR*SPRS*PYPAQ*GRI*QLYL*RKNTLSYERLHPRF*PKRTCSLHQ*EH*GPC*TISLSAR*QRRSHHPHLY*RKGQTSRRPSPPTTVVGLIALAPVLPVF*EVVRGRQQLLA*QPNVTLAVWASAHLA*QPV*AARA*RGHTALPGGSVRQVMH 1155
Range 6: 457 to 1155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
312.2 bits(675) | 0.0 | 171/233(73%) | 0/233(0%) | Plus/Plus |
Query 69 *WRRGPQLLQFPTRLVTTPCLKL*HMR*LLYTTTG*CRXXXXXXXXXXXXXNKMSRSPNGKRHNGLLSQQLLASMYHFRISRKHQNQRNLFHNSRWRRRPL*RLAFSSVKVGAMRXXXXXXXXXXXXTGLLTFLSMLRTPLFGPKFGMKPLVGEDIFMSRIAXXXXXXXCGVGLQLKISL*IRPQGVMLPYHV*SCGACAKGRS*ALPKGGVGLTMRG*GEKFTDVVASHLPF 767 *WR+GPQL Q PT L++T KL M L YTTTG*CR+P SSASSLN L +KMSRSPNGKRH GLLSQQLLAS YHF +RKH +QRN HNSRWRRRP *RLAFSSVKVG MRA SSCGKG+C TG L FL M RT FG K GMKPLVGE IF S+I LL+SSL CGVGL+ + S *I+PQGVMLP SCG CAKGR A PKGGVGLTMRG*GEKFTDVVASHLPF Subject 457 *WRQGPQLPQLPTCLISTSYSKLFLMHYLSYTTTG*CRMPPSSASSLNRLLSKMSRSPNGKRHIGLLSQQLLASTYHFLKNRKHWSQRNQSHNSRWRRRPP*RLAFSSVKVGVMRATLSSCGKGNCLTGPLMFLLM*RTRSFGLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPKGGVGLTMRG*GEKFTDVVASHLPF 1155
Range 7: 830 to 1156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 80/109(73%) | 0/109(0%) | Plus/Plus |
Query 442 VVQQGS*RSYQC*EHLCLGQNLG*SLS*ERIFLCQG*HC*VLPYRAG*GYN*RFHCEYGPRV*CCLTTYRVVEHARKGVREHYQRVVLV*Q*EAEGRNLQTSLLLIFLF 768 +V QG * SY C EH+ LG NLG*SLS*ER+FL Q * C*+LPY AG*GY+ H EY PRV*CCL + VVE+ARKGV H+QRVVLV*Q*EAEGRNLQTSLLLIFLF Subject 830 IV*QGP*CSY*CKEHVRLG*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLF 1156
Range 8: 470 to 781 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 79/104(76%) | 0/104(0%) | Plus/Plus |
Query 82 DLNFCSFXXXXXXXXXXSCNTCVDCCTLPPGSAVYPCQARAA*TGCQTR*AEAQTASVTMGC*ANSCWRPCTTSE*AGSTKTSAICSTTVVGGEGHSDVWPFLQ 393 DLNF +FRRV* RRR+ SC C+ C TLPPGSAV P QARAA*TGC R*AEAQTASVT+GC*ANSCWRP TTS GST SAI TTVVGGEG DVWPFLQ Subject 470 DLNFRNFRRV*FRRRIRSCF*CITCRTLPPGSAVCPRQARAA*TGC*AR*AEAQTASVTLGC*ANSCWRPRTTS*KTGSTGASAISPTTVVGGEGRLDVWPFLQ 781
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 1881 to 2255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 38/125(30%) | 0/125(0%) | Plus/Plus |
Query 332 QSVPQQSLEEKATLTFGLFFSKGGGDESGGVILRKGKLFNRALNVPINVKNTFVWAKIWDEASRRRGYFYVKDSIVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVSTTKGWCW 706 Q+ ++ E+ T F ++GG +SG ++L+ GK FN +N P+ VK T W +++D + + Y Y ++ + + ++ DFI T G V LPR + + VST GWCW Subject 1881 QAANERRRVERVKATMNAFVAEGGRWKSGAIVLKNGKFFNTFINQPLEVKTTNAWLRVYDIDAEKPIYVYAREGRIFKLCVEGRAPSVIDFIRATQKGHYVELPRTSFFCPATKKMVSTEVGWCW 2255
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 1484 to 1651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 22/56(39%) | 0/56(0%) | Plus/Plus |
Query 377 FGLFFSKGGGDESGGVILRKGKLFNRALNVPINVKNTFVWAKIWDEASRRRGYFYV 544 F ++ +GGG + LR + R+ ++VKNT+ W K+WDE + RRGYFY+ Subject 1484 FDVYMKRGGGFFGEDIFLRDAVPYCRSTRSFVDVKNTYRWTKVWDEQTGRRGYFYM 1651
Range 2: 1697 to 1876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 20/60(33%) | 0/60(0%) | Plus/Plus |
Query 590 TIEDFIVNTAPGCDVALPRIELWSMRERAFVSTTKGWCWFNNERLRGEIYRRRCFSSSFS 769 TI +F+ P +V LP + + R R V ++GWCW+N RLR + R S ++ Subject 1697 TITEFLFGVGPDDEVQLPDMAFYCPRLRRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYT 1876
Nucleotide Sequence (315 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
245.3 | 1395.7 | 34% | 1.423e-64 | 96% | NC_004667 | |
158.2 | 261.5 | 33% | 2.255e-38 | 55% | NC_022072 | |
107.4 | 163.4 | 32% | 4.611e-23 | 43% | NC_029783 | |
84.0 | 152.9 | 16% | 4.994e-16 | 49% | NC_001836 | |
91.3 | 149.2 | 19% | 3.101e-18 | 51% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10610 to 10924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 105/105(100%) | 0/105(0%) | Minus/Minus |
Query 1 TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV 315 TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV Subject 10610 TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV 10924
Range 2: 10611 to 10922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.3 bits(516) | 0.0 | 104/104(100%) | 0/104(0%) | Plus/Plus |
Query 2 TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 313 TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG Subject 10611 TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 10922
Range 3: 10610 to 10924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.5 bits(499) | 0.0 | 101/105(96%) | 0/105(0%) | Plus/Plus |
Query 1 DSRSPLFLS*VASRRPIISGFRLWGRNFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC 315 D RSPLFLS*VASRRPIISGF WGR+FRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC Subject 10610 DGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC 10924
Range 4: 10614 to 10922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.4 bits(490) | 0.0 | 100/103(97%) | 0/103(0%) | Minus/Minus |
Query 5 TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESSSPKVENR***VFYSRLS*GIEGCG 313 TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVES SPK++NR***VFYSRLS*GIEGCG Subject 10614 TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCG 10922
Range 5: 10615 to 10923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.0 bits(487) | 0.0 | 100/103(97%) | 0/103(0%) | Minus/Minus |
Query 6 HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKFLPQSRKPLIIGLLLAT*LRNRGLR 314 HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRK LPQ++KPLIIGLLLAT*LRNRGLR Subject 10615 HPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLR 10923
Range 6: 10612 to 10923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.0 bits(487) | 0.0 | 100/104(96%) | 0/104(0%) | Plus/Plus |
Query 3 QPQPSIP*LSRE*KTYY*RFSTLGEELSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV 314 +PQPSIP*LSRE*KTYY*RF LGE LSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV Subject 10612 RPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV 10923
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11579 to 11890 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 64/104(62%) | 0/104(0%) | Plus/Plus |
Query 2 TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 313 TAAALYSLAKS ++D+L+AVFDFGGGTFDVSFVKKKG+IL V++S GDNFLGGRDID A+ +K+K+ G KL FVS++KED+SN+ ++ H++P G Subject 11579 TAAALYSLAKSGLDDMLIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKG 11890
Range 2: 11578 to 11889 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 57/104(55%) | 0/104(0%) | Minus/Minus |
Query 1 PPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV 312 P G C LD SS I DT +L P F L A SISLPPKKLSP E T I PFFLT +TSKVPPPKSKTA N SS+ DLA E +AAAV Subject 11578 PFIVGTICVSTLGSLDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTAINISSSPDLASEYKAAAV 11889
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 10808 to 11119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 45/104(43%) | 0/104(0%) | Plus/Plus |
Query 2 TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 313 TAA L ++ S ++ + VFDFGGGTFD+S + K+G +L VI + GDN+LGGRD+D I++ I ++ + I VS MKE +S+ A T+ +IP+E G Subject 10808 TAAGLLGMSVSSNDNTVYGVFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG 11119
Range 1: 9179 to 9394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 35/72(49%) | 0/72(0%) | Plus/Plus |
Query 59 VFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNN 274 VFDFGGGTFDVS++KK G I+ +I + GD FLGGRDID+A+ E I QK D + ++ +S N Subject 9179 VFDFGGGTFDVSYIKKHGKIVSIIDTAGDLFLGGRDIDKALAEFISQKTGHSCDDLFINHLKETVTPGVSKN 9394
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10390 to 10590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 36/67(54%) | 0/67(0%) | Plus/Plus |
Query 2 TAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK 202 T+AALY + AVFDFGGGT D+SF+ + N++ V+FS GDNFLGGRDIDRAIV+ ++++ Subject 10390 TSAALYGAVRGGALKETYAVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE 10590
Range 2: 10389 to 10571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 31/61(51%) | 0/61(0%) | Minus/Minus |
Query 1 TIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAV 183 TIALS+S PP+KLSP E T + N+ SKVPPPKSKTA S L +AA V Subject 10389 TIALSMSRPPRKLSPFENSTLTTLLNLDMNDISKVPPPKSKTAYVSFSAPPLTAPYKAADV 10571
Nucleotide Sequence (450 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
323.6 | 1022.2 | 37% | 6.478e-88 | 45% | NC_004667 | |
253.1 | 467.7 | 41% | 1.12e-66 | 35% | NC_022072 | |
196.7 | 275.8 | 40% | 1.035e-49 | 45% | NC_029783 | |
194.0 | 267.6 | 20% | 6.96e-49 | 33% | NC_016509 | |
153.7 | 213.4 | 17% | 9.568e-37 | 43% | NC_009992 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 7810 to 8244 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
323.6 bits(700) | 0.0 | 134/145(92%) | 0/145(0%) | Minus/Plus |
Query 8 RTMTKELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL 442 RTMTKELVLSVGSQRRSGGANTWLGNS+VLCTLLSVVLRGLDY Y+V+SGDDSLIFSRQPLD+DTSVLSDNFGFDVK+FNQAAPYFCSKF+VQV+D LFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKG NREDVIQ L Subject 7810 RTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGFNREDVIQEL 8244
Range 2: 7971 to 8234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 67/88(76%) | 0/88(0%) | Plus/Minus |
Query 18 ITSSRLRPFDRSTKD*KISCKRSISDVFDAPNFTKSFNGSGTKNKPSSTWTINLEQKYGAA*LNIFTSKPKLSLKTDVSTSKGCRLKI 281 +TSS L+PF+RSTKD*KISCKRSIS+V +APN TKS +GSGTK + SST T NLEQKYGAA L IFTSKPKLSL+TDVS S GCRL I Subject 7971 MTSSLLKPFERSTKD*KISCKRSISEVLEAPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISNGCRLNI 8234
Range 3: 7809 to 7907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 22/33(67%) | 0/33(0%) | Plus/Minus |
Query 345 KVQRTILLPNQVFAPPLRLCDPTDSTSSFVMVL 443 KV +T L PN V APPLRL +PTD+T+SFV+VL Subject 7809 KVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVL 7907
Range 4: 7816 to 8010 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 34/65(52%) | 0/65(0%) | Plus/Minus |
Query 242 NRCVDV*RLPAKNKTIIAAYDHIIVI*TPKYNGQQSTKNDTIT*PSVCSTTPPLRSNRQHKLLRH 436 NR +++ RLP K K II A +I +I*+PKY GQQ ++ TI+ P V +TT PLR++RQH+ LRH Subject 7816 NRRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRH 8010
Range 5: 8053 to 8238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 34/62(55%) | 0/62(0%) | Plus/Minus |
Query 14 LNNVLPIKALRQIHKRLKNLMQKIYIRCF*RSKFHEEFQRVGNEKQTVIHLDHKLRAKIWSS 199 L++VL I+ LR+I +RLKNLM K+ I F SK +EEF+ +GN+K+T++ L+ KLR KIWSS Subject 8053 LDDVLSIETLRKIDERLKNLM*KVDI*SFGSSKLNEEFKWIGNKKETILDLN*KLRTKIWSS 8238
Range 6: 7817 to 8230 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 69/138(50%) | 0/138(0%) | Minus/Plus |
Query 22 *RRSLCCLLDRKGGVVEQTLG*VIVSFFVLCCPLYLGV*ITIMWS*AAMIVLFLAGSL*TSTHRF*VIILALM*RCLIKLLHIFALSLWSRWMTVCFSFPTR*NSS*NLERQKHLI*IFCMRFFSLLWICRRALIGRT 435 *RR+ CCL +G VV T G IV CCP YLG *I ++ A MI L+L GS RF* IIL L *R L KLLHIF LS + V F FP NSS +LE K I F MRFF+L I RR I RT Subject 7817 *RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD*IIVIL*LAVMIALYLVGSRWILIRRF*AIILVLT*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLELPKLQISTFYMRFFNLSSIFRRVSIERT 8230
Range 7: 7809 to 8213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 61/135(45%) | 0/135(0%) | Minus/Plus |
Query 39 QDHDEGACAVCWIAKAEWWSKHLVR**YRSLYFAVRCT*GSRLRLCGHKRR**SYF*PAAFRRRHIGFK**FWL*CEDV*SSCSIFLL*VYGPGG*RFVFRSRPVETLREIWSVKNI*YRSFA*DFSVFCGSVEG 443 ++ DEG VC +++A+WW H+V *+ ++ VR T*G RL L R ** Y * AA ++G + *FW * +D * SCSIFL *V+ +F SR TLR +WS +N YR F *DFS+F S EG Subject 7809 ENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YVGSER*FWF*RKDF*PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VWSFQNFRYRPFT*DFSIFRRSFEG 8213
Range 8: 7817 to 8077 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 41/87(47%) | 0/87(0%) | Plus/Minus |
Query 175 T*SKNMEQLD*TSSHQSQNYHLKPMCRRLKAAG*K*DYHRRL*PHNRNLDP*VQRTAKYKERYYYLTKCLLHHSAFAIQQTAQAPSS 435 T*+KNMEQL * S Q+QNY +P + AA * * YH R +N NL P*V RT + Y+ T C HH A +QT PSS Subject 7817 T*NKNMEQLG*KSLRQNQNYRSEPTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSS 8077
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 8883 to 9308 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
253.1 bits(546) | 0.0 | 101/142(71%) | 0/142(0%) | Minus/Plus |
Query 8 TKELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL 433 +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG + YVV+SGDDSLIFSR LD+DTS LSDNFGFDVK+F QA PYFCSKF+VQ D GLFFVPDPLK+F+K G S+ +D+DLLHE++ S VD++K E V+ L Subject 8883 SKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLKMFIKLGVSRVADLDLLHEVYMSMVDITKNFGNEMVVNEL 9308
Range 2: 9035 to 9265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 39/77(51%) | 0/77(0%) | Plus/Minus |
Query 51 STKD*KISCKRSISDVFDAPNFTKSFNGSGTKNKPSSTWTINLEQKYGAA*LNIFTSKPKLSLKTDVSTSKGCRLKI 281 ST D S +S S + PN F GSGTKN P S T N EQK G A L FTS PKLSL +VS S R KI Subject 9035 STIDM*TS*SKSKSATLETPNLINIFRGSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNSVREKI 9265
Range 3: 8883 to 9047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 25/55(45%) | 0/55(0%) | Plus/Minus |
Query 269 PAKNKTIIAAYDHIIVI*TPKYNGQQSTKNDTIT*PSVCSTTPPLRSNRQHKLLR 433 P +++TII A++HIIV+ + ++ QQ T++ + *PSV +T PL NRQ LLR Subject 8883 PGEDQTIITAHNHIIVLISS*HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLR 9047
Range 4: 8888 to 8971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 20/28(71%) | 0/28(0%) | Plus/Minus |
Query 345 KVQRTILLPNQVFAPPLRLCDPTDSTSS 428 KVQ T + PNQVFAPPLRL PTD T+S Subject 8888 KVQSTTVFPNQVFAPPLRL*LPTDKTNS 8971
Range 5: 9004 to 9183 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 21/60(35%) | 0/60(0%) | Plus/Minus |
Query 133 GRERKTNRHPPGP*T*SKNMEQLD*TSSHQSQNYHLKPMCRRLKAAG*K*DYHRRL*PHN 312 G ++T +P T +K+ QL * +S Q+Q+ H C+ +G + DYH R PHN Subject 9004 GLVQRTVHYPSAQGTSNKSRAQLA*RASRQTQSCH*VMRCQYPIPSGRRSDYHHRSQPHN 9183
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 8635 to 9057 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 82/141(58%) | 0/141(0%) | Minus/Plus |
Query 8 KELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL 430 KEL LS+GSQRRSGGANTWLGN++VL +LLS++L +D V+ SGDDSLIFS++ LD+DT+ LS +GFDVK+ + + PYFCSK+ V+ +DGL FVPDP KL +K G + + L+HE F+SFVDL+ N E+VIQ L Subject 8635 KELSLSIGSQRRSGGANTWLGNTMVLLSLLSILLNKRPFDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFKLLMKAGYLREDNDALIHEHFKSFVDLTGSYNSEEVIQEL 9057
Grapevine leafroll-associated virus 1, complete genome
Range 1: 8349 to 8768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 77/140(55%) | 0/140(0%) | Minus/Plus |
Query 8 ELVLSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSKGLNREDVIQAL 427 ELVLSVG+QRRSGGANTWLGN++VL TLL++ L+G + VV+ GDDSLIFS+ L +D +L ++FGFD+K+ Q APYFCSK++V+ D +F+PDP KLF+K + + DLL E+F SFVDL++G E +Q L Subject 8349 ELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLEREPNEDLLFEVFTSFVDLTRGFGDESAVQQL 8768
Plum bark necrosis and stem pitting-associated virus, complete genome
Range 1: 8307 to 8684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 64/126(51%) | 0/126(0%) | Minus/Plus |
Query 41 LSVGSQRRSGGANTWLGNSIVLCTLLSVVLRGLDYDYVVISGDDSLIFSRQPLDVDTSVLSDNFGFDVKMFNQAAPYFCSKFMVQVDDGLFFVPDPLKLFVKFGASKTSDIDLLHEIFQSFVDLSK 418 LS+GSQRR+G A TWLGN++V L++ VL ++ + SGDDS++F PLD+D S +F FDVK+F PYFCSKF V GL FVPDP+KLFV G+ K D ++ E F SF+DL+K Subject 8307 LSIGSQRRTGTATTWLGNTVVNMALMARVLGCENFSSMAFSGDDSILFHHSPLDLDISNYELHFAFDVKLFRMTVPYFCSKFFVVGSSGLNFVPDPVKLFVSLGSEKNDDESVMRERFVSFLDLTK 8684
Range 2: 8459 to 8683 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 32/75(43%) | 0/75(0%) | Plus/Minus |
Query 42 FDRSTKD*KISCKRSISDVFDAPNFTKSFNGSGTKNKPSSTWTINLEQKYGAA*LNIFTSKPKLSLKTDVSTSKG 266 F +S K +S S F P T +F GSGTK +P T NLEQKYG L TSK K + +S SKG Subject 8459 FVKSRKLTNLSRITDSSSFFSEPKLTNNFTGSGTKLRPDDPTTKNLEQKYGTVILKSLTSKAKCNS*LLISKSKG 8683
Nucleotide Sequence (732 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
563.0 | 3106.8 | 28% | 1.099e-159 | 96% | NC_004667 | |
312.9 | 491.7 | 36% | 2.138e-84 | 32% | NC_022072 | |
216.4 | 216.4 | 31% | 2.355e-55 | 39% | NC_016509 | |
147.4 | 178.1 | 26% | 7.91e-38 | 38% | NC_029783 | |
119.9 | 146.1 | 20% | 2.668e-28 | 42% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10833 to 11561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
563.0 bits(1225) | 0.0 | 240/243(99%) | 0/243(0%) | Minus/Plus |
Query 2 AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR 730 AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV QPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR Subject 10833 AKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR 11561
Range 2: 10831 to 11562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
545.9 bits(1185) | 0.0 | 240/244(98%) | 0/244(0%) | Plus/Minus |
Query 1 LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSVHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAENPLPRPLAYSLKCPPVSVRYYLPKYRSXXXXXXXXNI*NRYCRTRP*ISAAN*PHHS*P*LEHLTPQS*QQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH 732 LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTS HLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAE+PLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTR *ISAAN*PHHS*P*LEHLTPQS*+Q*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH Subject 10831 LSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P*LEHLTPQS*RQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWH 11562
Range 3: 11073 to 11561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
384.6 bits(833) | 0.0 | 159/163(98%) | 0/163(0%) | Plus/Minus |
Query 2 SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRYLRQISHITPDL 490 SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERR I*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLK HYLVR*RIR*SVHQSQSAITCQ+IAVNLSPTSHRTSKIGTVEHD RYLRQISHITPDL Subject 11073 SPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDL 11561
Range 4: 10833 to 11033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.5 bits(368) | 0.0 | 67/67(100%) | 0/67(0%) | Plus/Minus |
Query 530 RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG 730 RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG Subject 10833 RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LG 11033
Range 5: 11077 to 11562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
371.8 bits(805) | 0.0 | 158/162(98%) | 0/162(0%) | Minus/Plus |
Query 1 SGVMWLICRRYLRSCSTVPILDVRWLVGLRFTAIFWQVIAD*DWWTLXXXXXXXR*WIFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MNRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE 486 SGVMWLICRRYL+SCSTVPILDVRWLVGLRFTAI WQVIAD*DWWTL*RIR*RTR*W+FSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*M+RRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE Subject 11077 SGVMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGE 11562
Range 6: 10831 to 11004 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 58/58(100%) | 0/58(0%) | Minus/Plus |
Query 559 MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK 732 MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK Subject 10831 MPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK 11004
Range 7: 11192 to 11560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
284.7 bits(615) | 0.0 | 121/123(98%) | 0/123(0%) | Minus/Plus |
Query 3 *RTETGGHFNEYANGRGSGFSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*TDVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE 371 *RTETGGHFNEYANGRGSG SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK* DVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE Subject 11192 *RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWE 11560
Range 8: 10961 to 11131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 55/57(96%) | 0/57(0%) | Minus/Plus |
Query 432 NRCTIQR*GCGSIQNWS*QLLPRPGYCCYDWGVKCSS*GQE*CG*FAADI*GRVRQY 602 NRCTIQR*GCGSIQNWS*QLLPRPGYC YDWGVKCSS*GQE*CG*FAADI* RVRQY Subject 10961 NRCTIQR*GCGSIQNWS*QLLPRPGYCRYDWGVKCSS*GQE*CG*FAADI*SRVRQY 11131
Range 9: 10832 to 10909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 26/26(100%) | 0/26(0%) | Minus/Plus |
Query 654 CQVRDIRILDEGRLV*Q*RYNATPYP 731 CQVRDIRILDEGRLV*Q*RYNATPYP Subject 10832 CQVRDIRILDEGRLV*Q*RYNATPYP 10909
Range 10: 11264 to 11560 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 99/99(100%) | 0/99(0%) | Plus/Minus |
Query 3 LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI 299 LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI Subject 11264 LPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI 11560
Range 11: 10958 to 11197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 79/80(99%) | 0/80(0%) | Plus/Minus |
Query 366 PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGATIA 605 PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA Subject 10958 PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA 11197
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11804 to 12529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
312.9 bits(678) | 0.0 | 127/242(52%) | 0/242(0%) | Minus/Plus |
Query 2 KLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGR 727 KL FVS++KED+SN+ ++ H++P G E+V LT EL +VAPF+ +AV++F ++ F PD +AV+TGGSSALV+VR +A LP ++ VV+D DFRCSVACGAKVYCD L G LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT Y+V +VVYG++EGE NR++LNE TFR + TD +++LS DGT+SV +NG+ NE+ +NV+ S Y +GR Subject 11804 KLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAELTEVVAPFAKKAVKIFSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGR 12529
Range 2: 11932 to 12159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 41/76(54%) | 0/76(0%) | Plus/Minus |
Query 372 LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGAT 599 LP K SQ T AP ATEHLKS S TTL G A LT T+AL+PPV TA SG LS TA NGAT Subject 11932 LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSGRNLSIASEKIFTAFLANGAT 12159
Range 3: 12235 to 12270 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 10/12(83%) | 0/12(0%) | Plus/Minus |
Query 261 VYEQGIGLPFGK 296 VYEQGIG P GK Subject 12235 VYEQGIGFPLGK 12270
Range 4: 12298 to 12357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Minus |
Query 174 NVGSFRKALLFSPSNIPYTT 233 NV S R FSPS PYTT Subject 12298 NVSSLR*LRFFSPSYTPYTT 12357
Range 5: 12074 to 12367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 31/98(32%) | 0/98(0%) | Plus/Minus |
Query 164 YAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRY 457 + PER F+ +++ L F ++++ I TH V + YW +N RL++++LV I ++QS+ +T IAV T + TSK+ V H Y Subject 12074 FTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASY 12367
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10624 to 11295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(467) | 0.0 | 88/224(39%) | 0/224(0%) | Minus/Plus |
Query 53 LGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYL 724 L + ++ +KE + N + G+E + ++ DEL+A+ PF RA+++F G + P++ V+TGGS AL V+ + LP +S+ +DS FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+ F +VIFPKG PIP Y + + G + YGI EGE+NR +LNE F+G R + ++D ++ +S DG + + V+G ++KN L Subject 10624 LAVMIADLKEKICVNGGTQYTQVKTSNGLETLSMSVDELNAVSEPFVDRAIKIFAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRL 11295
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 11114 to 11602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.4 bits(316) | 0.0 | 62/163(38%) | 0/163(0%) | Minus/Plus |
Query 161 EGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVS 649 +G ++ T D+L + PF RAV++F + + P V+TGGS+AL + + ++ ++ V+++ FR SVA GAK+Y D+L S L L+D+L+ TL+D++ F+ ++FPKG+ IP ++ YTVG +V YG++EGE N +LN+ TF+GV+ Subject 11114 DGSRQIASYTLDQLISDSGPFLDRAVQMFSRLVRDLANPPTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA 11602
Range 1: 10273 to 10629 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.9 bits(256) | 0.0 | 53/119(45%) | 0/119(0%) | Minus/Plus |
Query 173 VIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTF 529 V VM GGSSA+ +R VA + +VVFD+ FR +VA GAKVY D L N GL LVDTL++ + DE+V + V+ KG +P + Y GG++ ++EGE+ AF+NEPT+ Subject 10273 VNVVMVGGSSAIPLLRDAVATCRGVKRVVFDNNTFRIAVAVGAKVYSDSLVSNKGLVLVDTLSHAILDEIVGLKAKVVVGKGQVVPSTAEINYGFSGGNMRIDVYEGEHPLAFMNEPTY 10629
Nucleotide Sequence (342 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 3732 to 4022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.0 bits(500) | 0.0 | 90/97(93%) | 0/97(0%) | Minus/Plus |
Query 50 LGARASANTWKFGGFSNNWCAVPEVVWRGRSISSLLLPITLGASLVIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTRHDTVP 340 LGARASANTWKFGGFSNNWCAVPEVVWRG+S+SSLLLPITLG SL+IRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGT+H+ VP Subject 3732 LGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP 4022
Range 2: 3730 to 4068 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 83/113(73%) | 0/113(0%) | Plus/Minus |
Query 4 HHSLRYQRRIHHCHLQEPYHAESQMDPHLRHSRSPGNT*ASHHRHSSPQLVEHKQVEVWYR*ANPL*PKKRLA**AVATS*YSSLAKQPRERRTNYWRTPQTSKCSR*PSPQA 342 HHSLR+ + IH +EP HAESQMD HLRHS+SPGNT*ASH HSSP V KQVEVW R*A+PL* K LA**AV S*+SSLAKQPRE+RTNYWR+ QTSK SR*PSPQA Subject 3730 HHSLRH*KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQA 4068
Range 3: 3731 to 3937 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 62/69(90%) | 0/69(0%) | Plus/Minus |
Query 135 TFLPSTGGT*AS*GMVSLSKPLMTKEAPSVIGSSNELILLPRQTTSGTAHQLLENPPNFQVFALALAPS 341 TFLPSTGGT*AS*GMVSLSKPLM K+ PSVIGS+NEL L PRQTTSGTAHQLLE PPNFQVFALALAPS Subject 3731 TFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPS 3937
Range 4: 3983 to 4066 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 23/28(82%) | 0/28(0%) | Plus/Minus |
Query 6 S*LEIPEEDPSLSSPGTVSCRVPDGPAP 89 S*LE E DPSLSSPGT SC VPDGPAP Subject 3983 S*LETLEVDPSLSSPGTASC*VPDGPAP 4066
Range 5: 3867 to 4067 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 49/67(73%) | 0/67(0%) | Plus/Minus |
Query 5 IIA*DTRGGSITVISRNRIMPSPRWTRTFVIVEVPVIPKRLIIDIPPLNWWNISKLRYGIVKQTPYD 205 IIA*DTR GSI +++ NR M SPRWT TFVIV+VPVIPKRLI+ IPPL W++SKLRYG+VKQ PYD Subject 3867 IIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYD 4067
Range 6: 3732 to 3827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 27/32(84%) | 0/32(0%) | Plus/Minus |
Query 245 DTPPSPNNLGNGAPIIGEPPKLPSVRASPRPK 340 DT PSPNNLGN APIIGE KLPS+RASPRPK Subject 3732 DTLPSPNNLGNSAPIIGEASKLPSIRASPRPK 3827
Range 7: 3731 to 4021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 76/97(78%) | 0/97(0%) | Minus/Plus |
Query 51 AWGEG*REHLEVWGVLQ*LVRRSRGCLAREEYQLVATAYYARRFFGHKGFA*RYHTSTCLCSTS*GEECL**DA*VLPGLRL*RRCGSIWDSA*YGS 341 AWGEG*RE+LEVW +LQ*LVR SRGCLAREE QL+ TAYYAR F HKG A*R+HTSTCL T GEEC+ *DA*VLPGL L*RRC SIWDSA* GS Subject 3731 AWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGS 4021
Range 8: 3868 to 4071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 49/68(72%) | 0/68(0%) | Minus/Plus |
Query 1 S*GVCLTIPYLNLLMFHQLRGGMSMMRRLGITGTSTMTKVRVHLGLGMIRFLEMTVMDPPLVSQAMMV 204 S*G CLT PYLNLL H+ RGGM MRRLGITGT TMTKV VHLGL M RF MDP LVSQAMM+ Subject 3868 S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMML 4071
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 5225 to 5398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 25/58(43%) | 0/58(0%) | Minus/Plus |
Query 104 VPEVVWRGRSISSLLLPITLGASLVIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD 277 +P +VW+G + +L+ + + SLV+R L D +PQ+ + +EGRNVYDE L+YY+D Subject 5225 MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD 5398
Nucleotide Sequence (878 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
630.2 | 3520.7 | 34% | 8.097e-180 | 73% | NC_004667 | |
303.9 | 679.7 | 19% | 1.311e-81 | 31% | NC_022072 | |
112.4 | 278.3 | 21% | 3.243e-30 | 43% | NC_016509 | |
105.5 | 207.6 | 13% | 6.972e-22 | 31% | NC_029783 | |
79.0 | 79.0 | 9% | 6.975e-14 | 41% | NC_011702 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 13584 to 14435 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
630.2 bits(1369) | 0.0 | 275/284(97%) | 0/284(0%) | Plus/Minus |
Query 22 ESLLFVSNKPSYNYLGERTREDQEELHSLT*KKDSLVCLSATATHESLHAYKPP*IINKR*IFLNFSPIYRHRSXXXXXXXXEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCSINLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELVCFY 873 ESLLFVSNKPS+NYLGER REDQEELH LT*KKDSLVCLSATATHESLH YK P*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQC INLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELV + Subject 13584 ESLLFVSNKPSHNYLGERIREDQEELHPLT*KKDSLVCLSATATHESLHVYKLP*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCGINLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELVWIF 14435
Range 2: 13593 to 14438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
621.0 bits(1349) | 0.0 | 275/282(98%) | 0/282(0%) | Minus/Plus |
Query 19 DKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWGLIRM*TFMSRGC*KTNKTIFLSSQRMKLLLILPGTFAQIVIRGLI*YKEQTFP 864 DKFLKTMGKGIALDL GVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSW LI M*TFMSRGC*KTNKTIFLSSQRMKLLLILP TFAQIV+ GLI*YKEQTFP Subject 13593 DKFLKTMGKGIALDLAGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWELIHM*TFMSRGC*KTNKTIFLSSQRMKLLLILPDTFAQIVM*GLI*YKEQTFP 14438
Range 3: 13583 to 14455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
613.2 bits(1332) | 0.0 | 279/291(96%) | 0/291(0%) | Minus/Plus |
Query 2 DKSRQVLEDYGQGNSFGLDGSYPQTESY*RARESISRGGNED*CCIDGAV*EGYGRR*RSN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHXXXXXXXXXXXXXXRNTSMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSANEAPPDPPGYVRPDSYTRAYLIQRADFPAKHTLS 874 ++SRQVLEDYGQGNSFGL GSYPQTESY*RARESISRGGNED*C IDGAV*EGYGRR*RSN*D+ILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRN SMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSA+EAPPDPPGYVRPDSY RAYLIQRADFP +LS Subject 13583 ERSRQVLEDYGQGNSFGLGGSYPQTESY*RARESISRGGNED*CRIDGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRNISMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSADEAPPDPPGYVRPDSYVRAYLIQRADFPNTQSLS 14455
Range 4: 13865 to 14437 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
445.1 bits(965) | 0.0 | 186/191(97%) | 0/191(0%) | Plus/Minus |
Query 20 GKVCSLYQISPRITIWANVPGRIRRSFIR*LERKIVLFVFQQPRLMKVYMRISPHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 592 GKVCSLYQISP ITIWANV GRIRRSFIR*LERKIVLFVFQQPRLMKVYM IS HELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHA+IASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP Subject 13865 GKVCSLYQISPHITIWANVSGRIRRSFIR*LERKIVLFVFQQPRLMKVYMCISSHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHANIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 14437
Range 5: 13592 to 13825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 76/78(97%) | 0/78(0%) | Plus/Minus |
Query 632 EDDVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKNLS 865 EDDVKNVQAICITYKKN VLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTP KSKAIPLPIVFKNLS Subject 13592 EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPAKSKAIPLPIVFKNLS 13825
Range 6: 13798 to 14454 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
479.0 bits(1039) | 0.0 | 211/219(96%) | 0/219(0%) | Plus/Minus |
Query 3 DRVCLAGKSALCIK*ALV*LSGRTYPGGSGGASFADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSMLVLRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ 659 D++ + GKSALCIK*AL *LSGRTYPGGSGGAS ADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSML+LRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ Subject 13798 DKL*VLGKSALCIK*ALT*LSGRTYPGGSGGASSADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSMLILRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ 14454
Range 7: 13579 to 13656 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 23/26(88%) | 0/26(0%) | Plus/Minus |
Query 801 VCG*LPSSPKLFPCP*SSRTCLLLSQ 878 VCG*LP SPKLFPCP*SSRTCL LS+ Subject 13579 VCG*LPPSPKLFPCP*SSRTCLDLSR 13656
Range 8: 13711 to 13746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 11/12(92%) | 0/12(0%) | Plus/Minus |
Query 711 P*PSYTAPSMQH 746 P*PSYTAPSM+H Subject 13711 P*PSYTAPSMRH 13746
Range 9: 13846 to 14346 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 165/167(99%) | 0/167(0%) | Minus/Plus |
Query 111 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSXXXXXXXXXXXTICSTTTQY*HGI*LDSRRLEXXXXXXXXXXXTSSNYCKRSSYDRCL*IGEKFRNXXXXXXXXXXXYACRLS*VAVAERQTRLSFFQ 611 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHG LY CRLS*VAVAERQTRLSFFQ Subject 13846 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHGSLYTCRLS*VAVAERQTRLSFFQ 14346
Range 10: 13591 to 13794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 66/68(97%) | 0/68(0%) | Minus/Plus |
Query 663 QTSS*RLWARE*LWT*RELPTNRKLLTSQGKYQ*RWQ*RLMLH*WSCVRRLWAPMTQQLRQNSSCT*C 866 QTSS*RLWARE*LWT RELPTNRKLLTSQGKYQ*RWQ*RLM H*WSCVRRLWAPMTQQLRQNSSCT*C Subject 13591 QTSS*RLWARE*LWTWRELPTNRKLLTSQGKYQ*RWQ*RLMPH*WSCVRRLWAPMTQQLRQNSSCT*C 13794
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 14514 to 15122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.9 bits(657) | 0.0 | 130/203(64%) | 0/203(0%) | Minus/Plus |
Query 253 KFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQK 861 KFL M K L++ KPKV+ EPG +S EVA K+NA L LC+K++GA+D T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY V++ IK A STGYENPVRQYLA+FTPT +TA LNGKL NEKVMAQHGVPPKFF YT+DCVRP+Y+LFNN AILAWNLAR++AF++KT ++DNTLHNV+Q+L K Subject 14514 KFLDMMSKNTILEIGDNAFKPKVVAEPGMLSQEVANKVNAELKVLCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDCVRPSYNLFNNSAILAWNLARREAFKSKTASSDNTLHNVYQMLNK 15122
Range 2: 14783 to 15115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 64/111(58%) | 0/111(0%) | Plus/Minus |
Query 260 NSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 592 N W TLC VLS VL LNA LAKFHA IA LLN+ G TQS V KN GGTPC AITFS SLP +AV VGV +ARY TGFS PV+ AC + T + IF P Subject 14783 NIWYTLCSVLSDDAVLDLNASLLAKFHARIALLLNKL*EGLTQSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP 15115
Range 3: 14516 to 14737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 30/74(41%) | 0/74(0%) | Plus/Minus |
Query 638 DVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKN 859 DV NV AIC + FV V S AP F HS+ ++A ATS + PGS T GL S+ + I+ KN Subject 14516 DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFSSAFTLFATSWLSMPGSATTLGLKALSPISRIVFFDIMSKN 14737
Range 4: 14646 to 15101 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 55/152(36%) | 0/152(0%) | Plus/Minus |
Query 274 VV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQ 729 VV* +I R L + *IPC V+E +VRR A+ V KE RWYS+L H+LLV * T++ R + + R IL V + R +S+F + + + L +I VV+LF R R ER +L + E S ++ + LLTQ Subject 14646 VV*RII*RRCLRLECFPPC*IPCQNSTVIE*VVRRPYAIQCVGKELRWYSVLSHHLLVRS*LTVKHSRHDRRGKPRQILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ 15101
Range 5: 16336 to 16548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 24/71(34%) | 0/71(0%) | Minus/Plus |
Query 310 NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFR 522 N VR Y+ Y+ T ++ L+GKL A+HGVP +F P+ D + D + A LA A R Subject 16336 NKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIR 16548
Range 6: 14678 to 14980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 31/101(31%) | 0/101(0%) | Minus/Plus |
Query 395 SN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVH 697 +N D++ AD VL++ +QRV L + *W +D+ G+* + T + +P +VS V++ + G * + REG G+ STT +L +H Subject 14678 TNSDELRSTNFADGSDVLHV*VFRIQRVRLPGDS*W*KDLRRRGV*HNKTRLRVYRVREPSSSVSGVVYPDDRDGYA*R*ANS*REGDGSTRSTT*VLCLH 14980
Grapevine leafroll-associated virus 1, complete genome
Range 1: 13700 to 14005 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 47/102(46%) | 0/102(0%) | Minus/Plus |
Query 262 VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL 567 V + + A + +ENP+RQY F+ T + LNGKL NEKV QHGVP +F PYT D RP+Y F+NDAI AW LA + AF K+ + L N +L Subject 13700 VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESAFGRKSNVTSSVLRNTSEL 14005
Range 2: 13478 to 13603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 18/42(43%) | 0/42(0%) | Minus/Plus |
Query 658 PGKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQI 783 PG V+ VA I+ L LC +VMG D + T FFL ++Q+ Subject 13478 PGLVTPAVATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQL 13603
Range 3: 13741 to 13953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 32/71(45%) | 0/71(0%) | Plus/Minus |
Query 314 NACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS 526 NA A HA +ASLLN G +S VYG+N GTPCC TFSF + PF + V Y GFS Subject 13741 NADSAANCHALMASLLN*E*DGLQKSKVYGRNLLGTPCCIATFSFGLNFPFNIKCTAVAENNLAY*RIGFS 13953
Range 4: 15231 to 15398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Plus |
Query 388 IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID 555 I+ + + YENPVRQY+ +F+ T I+ +G +V N VMA+HGV +F PY D Subject 15231 IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD 15398
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 13986 to 14291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 44/102(43%) | 0/102(0%) | Minus/Plus |
Query 262 VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL 567 +Y I+ A + YENPVRQY F+P+ I+A+ GK+ N+KV+AQHGV +F Y +D +RP+Y +N I AW LA+++AF + TLHN +L Subject 13986 LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLAQREAFSAVASSNATTLHNTSEL 14291
Range 2: 14024 to 14278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 32/85(38%) | 0/85(0%) | Plus/Minus |
Query 275 LCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS* 529 LCKV++ L A A A I L + +G + S Y TPCCA TF F LP +A++ +G + +YC TGFS* Subject 14024 LCKVVALELATALKASR*ANCQARICLTL*YA*LGLSTSKQYEAKRFTTPCCAKTF*FGLILPTELALIILGENFRQYCRTGFS* 14278
Range 3: 15476 to 15700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 23/75(31%) | 0/75(0%) | Minus/Plus |
Query 304 YENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNK 528 Y N +R+Y+ +++ T I+ G + N A HGV + PY D V D +A LA+ A +NK Subject 15476 YSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNK 15700
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 12579 to 12818 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 33/80(41%) | 0/80(0%) | Minus/Plus |
Query 316 IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQA 555 + + A+ GYEN +RQ+ FT + +GKL +N K+ A HGVPP ++PY+ DC+ LF DA LA LA+ A Subject 12579 LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDARLFGYDASLAAELAKMVA 12818
Nucleotide Sequence (345 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
68.4 | 1030.0 | 47% | 1.852e-22 | 62% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 17710 to 17835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 30/42(71%) | 0/42(0%) | Minus/Plus |
Query 91 NDYSFVV*VAVRGKMTKLYLTV*HSDVCKISP*SR**YCSSV 216 + ++FV *V RGKMTKLYLTV*+SD+CKISP*SR**Y S+ Subject 17710 SSFAFVE*VLFRGKMTKLYLTV*YSDICKISP*SR**YYISI 17835
Range 2: 17834 to 17917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 24/28(86%) | 0/28(0%) | Minus/Plus |
Query 5 *YNKRQNPMVNWDLGGPLMRLTYRQ*VR 88 *YNKRQNP+ WDLGGPL RLTYRQ*VR Subject 17834 *YNKRQNPIKVWDLGGPLTRLTYRQ*VR 17917
Range 3: 17681 to 17824 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 30/48(62%) | 0/48(0%) | Plus/Minus |
Query 102 NTTIDFTD*FYKHQSVKP*GRV*SSYLELRPKLQKSSHYFSTNKMFLF 245 N TIDFTD*FYK+QS+KP*G+V*SSYLE++P LQK T+ + F Subject 17681 NITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKTSLIISF 17824
Range 4: 17848 to 17919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 21/24(88%) | 0/24(0%) | Plus/Minus |
Query 3 DLTYCR*VSLIRGPPRSQFTIGFW 74 DLTYCR*VSL+RGPPRSQ IGFW Subject 17848 DLTYCR*VSLVRGPPRSQTLIGFW 17919
Range 5: 17722 to 17835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 29/38(76%) | 0/38(0%) | Plus/Minus |
Query 91 YATTILLSTLRTNFTNIRVLNREVEFSHLTSNCDLNYK 204 Y I LSTLRTNFTNIRVLNREV+FSHLTS +L YK Subject 17722 YTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYK 17835
Range 6: 17834 to 17917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 23/28(82%) | 0/28(0%) | Plus/Minus |
Query 5 PNLLSIS*PHKRPA*VPIYHWILAFIVL 88 PNLLSIS*P KRPA*VP ++WILAFI+L Subject 17834 PNLLSIS*PRKRPA*VPNFNWILAFIIL 17917
Range 7: 17708 to 17836 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 30/43(70%) | 0/43(0%) | Minus/Plus |
Query 90 IMTTLL*FRSQFEVR*LNSTSRFNTLMFVKLVRKVDSSIVVA* 218 + +LL* R FEVR*LN TSRFNTL+FVKLVRKVDS I++ * Subject 17708 VRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV* 17836
Range 8: 17833 to 17919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 26/29(90%) | 0/29(0%) | Minus/Plus |
Query 3 IVQ*TPKSNGKLGPRRASYEANLSTIS*V 89 IV *TPKSN LGPRRASYEANLSTIS*V Subject 17833 IV**TPKSN*SLGPRRASYEANLSTIS*V 17919
Range 9: 17721 to 17846 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 28/42(67%) | 0/42(0%) | Plus/Minus |
Query 80 IVLSTLLQYYYRLYGLILQTSEC*TVR*SLVILPRTAT*TTK 205 + + L+ Y+YRLYGLILQ SE *TVR*SLVILPR T +TK Subject 17721 VYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTK 17846
Range 10: 17832 to 17918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 26/29(90%) | 0/29(0%) | Plus/Minus |
Query 4 T*LIVDKLAS*EARLGPNLPLDFGVYCTI 90 T*LIVDKLAS*EARLGP L LDFGVY TI Subject 17832 T*LIVDKLAS*EARLGPKL*LDFGVYYTI 17918
Range 11: 17676 to 17825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 33/50(66%) | 0/50(0%) | Minus/Plus |
Query 101 KGNKNILLVEK**LLFCSLGRSSR*DD*TLPHGLTL*CL*N*SVKSIVVL 250 K N+ I LV FC +G SR*DD*TLPHGL L* L*N*SVKSIV+L Subject 17676 KKNEIIRLVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVIL 17825
Range 12: 17835 to 17918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 23/28(82%) | 0/28(0%) | Minus/Plus |
Query 4 STINAKIQW*IGT*AGLL*G*LIDNKLG 87 S INAKIQ GT*AGLL G*LIDNKLG Subject 17835 SIINAKIQLKFGT*AGLLRG*LIDNKLG 17918
Range 13: 6689 to 6754 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 21/22(95%) | 0/22(0%) | Plus/Plus |
Query 279 LH*TTAYTCWFVETHTLTGLCR 344 +H*TTAYTCWFVETHTLTGLCR Subject 6689 IH*TTAYTCWFVETHTLTGLCR 6754
Range 14: 6697 to 6753 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 19/19(100%) | 0/19(0%) | Plus/Plus |
Query 287 NNRIYLLVCRDTHAHWFMP 343 NNRIYLLVCRDTHAHWFMP Subject 6697 NNRIYLLVCRDTHAHWFMP 6753
Range 15: 6686 to 6754 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 22/23(96%) | 0/23(0%) | Minus/Minus |
Query 276 AA*TSERVCLDKPTSICGCLVKR 344 AA*TSERVCLDKPTSICGCLV R Subject 6686 AA*TSERVCLDKPTSICGCLVNR 6754
Range 16: 6690 to 6755 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 22/22(100%) | 0/22(0%) | Plus/Plus |
Query 280 FTKQPHILVGLSRHTRSLVYAA 345 FTKQPHILVGLSRHTRSLVYAA Subject 6690 FTKQPHILVGLSRHTRSLVYAA 6755
Nucleotide Sequence (426 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 9752 to 10171 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.0 bits(644) | 0.0 | 128/140(91%) | 0/140(0%) | Plus/Minus |
Query 3 PATGVQPLTPDGEKQIVLKVVPKSIPTSISN*KRNHTVLRPVLMVELCCNLGTTNVITSNRIITKTKSTTNNSIACLKSSINNYAYFNIKSRYYLRSARRSFTWRLPLFLF*GELVLFQSRTKTYLCRY*TSPSADKRTQ 422 PATGVQPLTPDGEKQIVLKVVPKSIPTSISN*+RNHTVLRPVLMVELCCNLGTTNV TS+RIITKTKSTT+NSIACLKSSIN YAYFNIKSRYYLRSARRSF WRLP FLF*GELVL QSR KTYLCR+*TS SAD+RTQ Subject 9752 PATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVRTSSRIITKTKSTTSNSIACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQ 10171
Range 2: 9750 to 10172 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 123/141(87%) | 0/141(0%) | Plus/Minus |
Query 2 TSYRSTTTDPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRXXXXXXXHKDEIDHQQQYCLFKIIHKQLRLLQYKITILPSLSTKIIHVAPSPISLLRRTCSIPISHENLFMSLLNLA*RR*THST 424 T +RSTT DPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+R NQQQN H+D+ID+ QQYCLFKIIHKQ+RLLQYKITILPSLSTK+I VAPSPISLLRRT SIPIS +NLFMS LNL *RR*THST Subject 9750 TGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV*RR*THST 10172
Range 3: 9751 to 10173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
274.2 bits(592) | 0.0 | 119/141(84%) | 0/141(0%) | Plus/Minus |
Query 1 YQLQEYNH*PQMGKSRLC*KWFQNLYLLPYLTKRGITLS*DLY*WWSFAVTSGRQT**PATE*SQRRNRPPTTVLPV*NHP*TTTLTSI*NHDITFAQHEDHSRGAFPYFSFKANLFYSNLARKPIYVATKPRLAPINALN 423 Y+ QEYN *PQMGKSRLC*KWFQNLYLLPYLTK GITLS*DLY*WWSFAVTSGR+T* PA E S+R+NR TVLPV*NHP*T T TSI*NHD TFAQHE HSRGAFP FSFKAN FY NLA+KPIYVATKPRLAP+NALN Subject 9751 YRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVLPV*NHP*TNTPTSI*NHDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALN 10173
Range 4: 9751 to 10149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.5 bits(560) | 0.0 | 115/133(86%) | 0/133(0%) | Minus/Plus |
Query 25 VECVYRR*ARFSSDINRFSCEIGIEQVRLKREIGEGAT*MIFVLSEGNIVILY*SKRSCLWMILNRQYCCWWSISSL*LFCCWLLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGS 423 VECV+RR* RFS DINRF EIGIE+VRLKREIGEGAT M FVLSEG+IVILY*S+R CLWMILNRQYCC SI S * FCCW LR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGS Subject 9751 VECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGS 10149
Range 5: 9968 to 10165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 58/66(88%) | 0/66(0%) | Minus/Plus |
Query 9 RFRLCDYSVAGYYVCRPEVTAKLHH*YRS*DSVIPLLVRYGSRYRFWNHFQHNLLFPIWGQWLYSC 206 RF L D S AG YV RPEVTAKLHH*YRS*DSVIP LVRYGSRYRFWNHFQHNLLFPIWGQ LYSC Subject 9968 RFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSC 10165
Range 6: 9753 to 9950 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 59/66(89%) | 0/66(0%) | Minus/Plus |
Query 224 *VRLSALGEV**RHK*VFVRDWNRTSSP*KRNRGRRHVNDLRAERR*YRDFILK*A*LFMDDFKQA 421 *VR SAL EV* RHK*VF RDW+RTSSP*KRNRGRRH NDLRAERR*YRDFILK*A LFMDDFKQA Subject 9753 *VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA 9950
Range 7: 10017 to 10172 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 51/52(98%) | 0/52(0%) | Minus/Plus |
Query 2 PRLQQSSTINTGLRTV*FLF*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG 157 PRLQQSSTINTGLRTV*FL *LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG Subject 10017 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG 10172
Range 8: 9752 to 9916 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 49/55(89%) | 0/55(0%) | Minus/Plus |
Query 258 LSAFIGARRGLVAT*IGFRARLE*NKFALKEK*GKAPRE*SSC*AKVIS*FYIEV 422 LSAFIGARRGLVAT*IGF ARL *N+FALKEK GKAPRE* SC*AKV+S*FYIEV Subject 9752 LSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEV 9916
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11048 to 11140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 22/31(71%) | 0/31(0%) | Minus/Plus |
Query 2 LDMEVGIDFGTTFSTICFSPSGVSGCTPVAG 94 + M+VGIDFGTTFST+C+S SG GCT VAG Subject 11048 IPMDVGIDFGTTFSTLCYSASGAGGCTRVAG 11140
Plum bark necrosis and stem pitting-associated virus, complete genome
Pineapple mealybug wilt-associated virus 1, complete genome
Nucleotide Sequence (954 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
672.3 | 3447.8 | 39% | 0 | 40% | NC_004667 | |
314.0 | 753.3 | 58% | 2.133e-91 | 29% | NC_022072 | |
108.7 | 277.4 | 25% | 4.873e-30 | 44% | NC_016509 | |
105.1 | 210.8 | 12% | 1.053e-21 | 31% | NC_029783 | |
79.9 | 79.9 | 8% | 4.062e-14 | 41% | NC_011702 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 13245 to 14192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
672.3 bits(1461) | 0.0 | 300/316(95%) | 0/316(0%) | Plus/Plus |
Query 6 CGFC*VDAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFXXXXXXXXXQEPPKQPTTQVVEPPEADIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDDTTTKTKFFLYVMQIACXXXXXXXXXXKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ 953 CGFC*V+AMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFATAALATAAQEPP+QP QV EP E DIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDL GVTHKPKVINEPGKVSVEVAMKIN AL+ELCKKVMG+DD TKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPT ITATLNGKLVMNEKVMAQHGVPPKFFPY IDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ Subject 13245 CGFC*VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFATAALATAAQEPPRQPPAQVAEPQETDIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDLAGVTHKPKVINEPGKVSVEVAMKINAALMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ 14192
Range 2: 13241 to 13825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
400.6 bits(868) | 0.0 | 179/195(92%) | 0/195(0%) | Minus/Minus |
Query 2 EDDVKNVQAICITYKKNFVLVVVSSEPITFLHSSTNAVLIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKNLSGSFSKTSLFGVRVSDSGTTPISASGGSTTCVVGCLGGSCXXXXXXXXANTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLRLFSGTTSYICPNFSSNAIASTQQKPHS 586 EDDVKNVQAICITYKKN VLV SS PITFLHSS NA LIFIATSTDTFPGSLITFGLWVTP KSKAIPLPIVFKNLSGSFSKT+LFGVRVSDSGTTPIS S GS TC GCLGGSCAAVAKAAVANTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTL+LFSGTTSYICPNFSSNAIA TQQKPH+ Subject 13241 EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSINAALIFIATSTDTFPGSLITFGLWVTPAKSKAIPLPIVFKNLSGSFSKTNLFGVRVSDSGTTPISVSCGSATCAGGCLGGSCAAVAKAAVANTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAFTQQKPHT 13825
Range 3: 13865 to 14191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 105/109(96%) | 0/109(0%) | Minus/Minus |
Query 626 WKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 952 WKTLCKVLSAVTVLFLNACCLAKFHA+IASLLNRSYVGRTQSI YGKNFGGTPCCA+TFSFITSLPFRVAV+KVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP Subject 13865 WKTLCKVLSAVTVLFLNACCLAKFHANIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 14191
Range 4: 13506 to 14192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
478.1 bits(1037) | 0.0 | 193/229(84%) | 0/229(0%) | Minus/Minus |
Query 267 LEDVV*GVIGRHRLISKRLLPS*IPC*YCVVIEQIVRRTNAVNRVRKEFRWYSMLCHDLFIHHQFTIQGRRDQGWREVC*ILPYRVFVTR*SGSLFNAIVYPHRIYLLSIVRFYVVELFELRRRRCKERASDLHHVQEEFCLGCCVIGAHNLLTQLYQCGINLHCYLY*YFSRLVNNFRFMGNPR*VQSYPLTHSL*ELVWIFLKNQLIWCKSLRFRHHPYIGFWWFHH 953 LEDVV*GVIGR+RL+SKRLL S*IPC*YCVV+EQIVRRTNAV RVRKEFRWYSMLCH+L +HH FTIQGRRD+GW EV *ILPYRVF+TR S SLFNAI+YPHRIYLLSI+ FYVV+LFELRRRRCKERAS+LHHVQEEFCL CCVIGAHNLLTQL+QCGINLHC+LY*YF LVNNFRF+GN R VQSY L HSL ELVWIFL+NQLIWC+SLRFRH+PYIGF WF H Subject 13506 LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCGINLHCHLY*YFPWLVNNFRFVGNSRQVQSYSLAHSLQELVWIFLENQLIWCESLRFRHYPYIGFLWFRH 14192
Range 5: 13248 to 13451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.1 bits(282) | 0.0 | 56/68(82%) | 0/68(0%) | Minus/Minus |
Query 9 GEYVLFRHYSDSC*LRLRPVLNVF*ETRLTKLSLCRIPYSNSQIVFGDNFIYLP*FQFKRHRVHSTKT 212 GEYV F HY DS * RL PVLNV *ETRLTK SLCRIP+SNSQI+FGD+FIYLP*FQFK HRVHSTKT Subject 13248 GEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPHSNSQIIFGDDFIYLP*FQFKCHRVHSTKT 13451
Range 6: 13864 to 14193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.6 bits(449) | 0.0 | 95/110(86%) | 0/110(0%) | Plus/Plus |
Query 625 MERRYMRCGYTIALNKLPLQRVTKTR*GSI*HTSRQP*SRRP*MVNW**MKRSWHSMEYHRNSFRTRLTAFVRRTICSITTQY*HGI*LGSRRLEIRR*RPITPYTTSSN 954 MERRYMRCGY IALNKL L+RV KTR*GSI* TS QP SRRP*MVN ** +R WHSMEYHRNSFRTR TAFVRRTICS TTQY*HGI*L SRRLE RR*RPITPYTTSSN Subject 13864 MERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSN 14193
Range 7: 13504 to 13794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 80/97(82%) | 0/97(0%) | Plus/Plus |
Query 265 KWWNHQKPI*GWCRNLRLLHQISWFLRKIQTSS*RLWVRG*LWT*RGLPINRKLLTSREKYQ*R*Q*RLIPHW*SCVRRLWAPMTQQPRQNSSCT*C 555 KW NH+KPI*G CRNLRL HQISWF RKIQTSS*RLW R *LWT R LP NRKLLTS+ KYQ*R Q*RL+PH SCVRRLWAPMTQQ RQNSSCT*C Subject 13504 KWRNHRKPI*G*CRNLRLSHQISWFSRKIQTSS*RLWARE*LWTWRELPTNRKLLTSQGKYQ*RWQ*RLMPH*WSCVRRLWAPMTQQLRQNSSCT*C 13794
Range 8: 13240 to 13452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.7 bits(257) | 0.0 | 56/71(79%) | 0/71(0%) | Plus/Plus |
Query 1 LSAVFVEWTRWRLN*N*GRYMKLSPKTI*ELE*GMRHKESLVRRVS*NTLRTGRRRS*QESL*CRKSTYSP 213 L VFVE TRW LN*N*GRYMK SPK I*ELE GMRHKE+LVRRVS*+TLRTG RR+*+ES *C K+TYSP Subject 13240 LCVVFVE*TRWHLN*N*GRYMKSSPKII*ELEWGMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSP 13452
Range 9: 13244 to 14050 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
430.9 bits(934) | 0.0 | 212/269(79%) | 0/269(0%) | Plus/Plus |
Query 5 VRFLLSGRDGV*TEIRADI*SCPRKQSES*SRGCGTRKV**GEFLKIR*GRDAGGVNRNRCSAGKVRIRHSSFSYSGTGAT*AADNXXXXXXXXXXXXXXXI*DSYTK*AGF*ERSRQVLKDYG*GDSFGLNGGYP*TESY*RAGKSISRGSNED*YRIGRAV*EGYGLR*HNNQDKILLVRDADRLHVLYIVFDGVQRVRLHRNGRWKEDICGVGIRLH*TSCRFNGLRKPGKAVSSILHANLDHGDPEW*TGDE*KGHGTAWSTTEI 811 V FLLS RDG+*TEIRADI*S PRK ES*S GCGTRK+**GEFLK+R*GRD GG+N NR SA K+RIRHSSF YSG GAT*AA +ASGGTT +RYRG AGI*DS+TK* GF ERSRQVL+DYG G+SFGL G YP TESY*RA +SISRG NED* RI AV*EGYG R* +N D+ILLVRDAD LHVLYIVFDGVQRV LHRN WKEDICGVGI LH*TSC F+GL KPGKAVSS+LH NL HGDPEW*T DE +G+GTAWSTTEI Subject 13244 VWFLLSERDGI*TEIRADI*SRPRK*FES*SGGCGTRKI**GEFLKVR*GRDTGGINGNRRSARKIRIRHSSFGYSGAGAT*AATSASGGTTGNRYRGSAGI*DSHTK*VGFRERSRQVLEDYGQGNSFGLGGSYPQTESY*RARESISRGGNED*CRIDGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEI 14050
Range 10: 14108 to 14191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 24/28(86%) | 0/28(0%) | Plus/Plus |
Query 869 NTSMEFS*AAGV*K*DGDGR*HLTQRLP 952 N SMEFS* AGV*K DG+GR*HLTQRLP Subject 14108 NISMEFS*TAGV*KQDGNGR*HLTQRLP 14191
Range 11: 13702 to 14193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.1 bits(642) | 0.0 | 137/164(84%) | 0/164(0%) | Minus/Minus |
Query 463 VGRRCVRCYRPSPSYF*TPAA*LNSMLVLRRY*TDRTSDERSQSRTERISVVLHAVP*PFHSSPVYHSGSP*SRLA*SMLDTALPGFRNPLKRQLV*CNRIPTPHISSFHRPFLCSRTL*TPSKTM*RTCKRSASRTRRILSWLLCHRSP*PSYTALPMRY*SS 954 VGRRCVRCYRP PS F*TPA *LNSML+LRR *TDRTSDERS S TERISVVLHAVP*P SS VYHSGSP* RL *S LDTALPGF NP K+QLV*CN IPTPHISSFH FLCS+TL*TPSKTM*RTCK+SASRTRRILS LL HR P*PSYTA MR+*SS Subject 13702 VGRRCVRCYRPLPSCF*TPAV*LNSMLILRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQSASRTRRILS*LLRHRRP*PSYTAPSMRH*SS 14193
Range 12: 13240 to 13452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 56/71(79%) | 0/71(0%) | Minus/Minus |
Query 1 WRIRTFPALQRFLLTPPASRP*RILRNSPY*TFLVPHPLL*LSDCFRGQLHISALISVQTPSRPLNKNRTQ 213 WRIR F AL+RF L PP SRP*R LRNSPY* FLVPHP L*LS+ FRG+LHISALISVQ PSR LNKN TQ Subject 13240 WRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPPL*LSNYFRGRLHISALISVQMPSRSLNKNHTQ 13452
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 14445 to 15110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.0 bits(679) | 0.0 | 135/222(61%) | 0/222(0%) | Plus/Plus |
Query 288 DIGVVPESETLTPNKLVFEKDPDKFLKTMGKGIALDLTGVTHKPKVINEPGKVSVEVAMKINTALVELCKKVMGSDDTTTKTKFFLYVMQIACXXXXXXXXXXKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQ 953 D+ V P SE + V EKDP KFL M K L++ KPKV+ EPG +S EVA K+N L LC+K++G++D T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY V++ IK A STGYENPVRQYLA+FTPT++TA LNGKL NEKVMAQHGVPPKFF Y +DCVRP+Y+LFNN AILAWNLAR++AF++KT ++DNTLHNV+Q Subject 14445 DVRVDPNSEARPGGRPVVEKDPSKFLDMMSKNTILEIGDNAFKPKVVAEPGMLSQEVANKVNAELKVLCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDCVRPSYNLFNNSAILAWNLARREAFKSKTASSDNTLHNVYQ 15110
Range 2: 14217 to 14390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 19/58(33%) | 0/58(0%) | Plus/Plus |
Query 36 FELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 209 F++K+ +YEV+ ENN +V +S L+Y+KD T AE +P +F Subject 14217 FKVKVNGLYEVINENNRKVVALPRQGDSYSTTELLRYIKDATPAEQGTYRELPANTIF 14390
Range 3: 14783 to 15109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 61/109(56%) | 0/109(0%) | Minus/Minus |
Query 626 WKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 952 W TLC VLS VL LNA LAKFHA IA LLN+ G TQS KN GGTPC A+TFS SLP +AV VGV +ARY TGFS PV+ AC + T + IF P Subject 14783 WYTLCSVLSDDAVLDLNASLLAKFHARIALLLNKL*EGLTQSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP 15109
Range 4: 14453 to 14737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 36/95(38%) | 0/95(0%) | Minus/Minus |
Query 296 DVKNVQAICITYKKNFVLVVVSSEPITFLHSSTNAVLIFIATSTDTFPGSLITFGLWVTPVKSKAIPLPIVFKNLSGSFSKTSLFGVRVSDSGTT 580 DV NV AIC + FV V S P F HS+ ++ ATS + PGS T GL S+ + I+ KN GSFS T S+ G+T Subject 14453 DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFSSAFTLFATSWLSMPGSATTLGLKALSPISRIVFFDIMSKNFEGSFSTTGRPPGLASELGST 14737
Range 5: 14898 to 15110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 31/71(44%) | 0/71(0%) | Minus/Minus |
Query 741 LEDVV*GVIGRHRLISKRLLPS*IPC*YCVVIEQIVRRTNAVNRVRKEFRWYSMLCHDLFIHHQFTIQGRR 953 L VV* +I R L + P *IPC VIE +VRR A+ V KE RWYS+L H L + T++ R Subject 14898 LVHVV*RII*RRCLRLECFPPC*IPCQNSTVIE*VVRRPYAIQCVGKELRWYSVLSHHLLVRS*LTVKHSR 15110
Range 6: 14646 to 14870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 23/75(31%) | 0/75(0%) | Minus/Minus |
Query 489 ILPYRVFVTR*SGSLFNAIVYPHRIYLLSIVRFYVVELFELRRRRCKERASDLHHVQEEFCLGCCVIGAHNLLTQ 713 IL V V S+F + + + L +I VVELF R R ER L + E ++ + LLTQ Subject 14646 ILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ 14870
Range 7: 14932 to 15102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 23/57(40%) | 0/57(0%) | Plus/Plus |
Query 775 KRSWHSMEYHRNSFRTRLTAFVRRTICSITTQY*HGI*LGSRRLEIRR*RPITPYTT 945 +R W + EYH +S T A T SIT + HGI* G + +R+ R I YTT Subject 14932 RR*WLNTEYHLSSLPTHWIA*GLLTTYSITVLFWHGI*QGGKHSSLRQRRQIIRYTT 15102
Range 8: 14681 to 14884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 20/68(29%) | 0/68(0%) | Plus/Plus |
Query 524 NQDKILLVRDADRLHVLYIVFDGVQRVRLHRNGRWKEDICGVGIRLH*TSCRFNGLRKPGKAVSSILH 727 N D++ AD VL++ +QRVRL + W +D+ G+ + T R +R+P +VS +++ Subject 14681 NSDELRSTNFADGSDVLHV*VFRIQRVRLPGDS*W*KDLRRRGV*HNKTRLRVYRVREPSSSVSGVVY 14884
Range 9: 16336 to 16548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 24/71(34%) | 0/71(0%) | Plus/Plus |
Query 696 NPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFR 908 N VR Y+ Y+ T ++ L+GKL A+HGVP +F P+ D + D + A LA A R Subject 16336 NKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIR 16548
Grapevine leafroll-associated virus 1, complete genome
Range 1: 13700 to 13993 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 45/98(46%) | 0/98(0%) | Plus/Plus |
Query 651 VYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHN 944 V + + A + +ENP+RQY F+ T + LNGKL NEKV QHGVP +F PY D RP+Y F+NDAI AW LA + AF K+ + L N Subject 13700 VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESAFGRKSNVTSSVLRN 13993
Range 2: 13478 to 13603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 19/42(45%) | 0/42(0%) | Plus/Plus |
Query 435 PGKVSVEVAMKINTALVELCKKVMGSDDTTTKTKFFLYVMQI 560 PG V+ VA I+T L LC +VMG+ D + T FFL ++Q+ Subject 13478 PGLVTPAVATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQL 13603
Range 3: 15231 to 15398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 25/56(45%) | 0/56(0%) | Plus/Plus |
Query 663 IKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAID 830 I+ + + YENPVRQY+ +F+ T I+ +G +V N VMA+HGV +F PY D Subject 15231 IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD 15398
Range 4: 13741 to 13953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 31/71(44%) | 0/71(0%) | Minus/Minus |
Query 692 NACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS 904 NA A HA +ASLLN G +S YG+N GTPCC TFSF + PF + V Y GFS Subject 13741 NADSAANCHALMASLLN*E*DGLQKSKVYGRNLLGTPCCIATFSFGLNFPFNIKCTAVAENNLAY*RIGFS 13953
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 13986 to 14279 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 43/98(44%) | 0/98(0%) | Plus/Plus |
Query 651 VYDCIKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHN 944 +Y I+ A + YENPVRQY F+P++I+A+ GK+ N+KV+AQHGV +F Y +D +RP+Y +N I AW LA+++AF + TLHN Subject 13986 LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLAQREAFSAVASSNATTLHN 14279
Range 2: 14024 to 14278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 33/85(39%) | 0/85(0%) | Minus/Minus |
Query 689 LCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIAYGKNFGGTPCCAMTFSFITSLPFRVAVIKVGVKYARYCLTGFS* 943 LCKV++ L A A A I L + +G + S Y TPCCA TF F LP +A+I +G + +YC TGFS* Subject 14024 LCKVVALELATALKASR*ANCQARICLTL*YA*LGLSTSKQYEAKRFTTPCCAKTF*FGLILPTELALIILGENFRQYCRTGFS* 14278
Range 3: 15476 to 15700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 23/75(31%) | 0/75(0%) | Plus/Plus |
Query 690 YENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQAFRNK 914 Y N +R+Y+ +++ T I+ G + N A HGV + PY D V D +A LA+ A +NK Subject 15476 YSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNK 15700
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 12579 to 12818 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 33/80(41%) | 0/80(0%) | Plus/Plus |
Query 663 IKQAAASTGYENPVRQYLAYFTPTLITATLNGKLVMNEKVMAQHGVPPKFFPYAIDCVRPTYDLFNNDAILAWNLARQQA 902 + + A+ GYEN +RQ+ FT ++ +GKL +N K+ A HGVPP ++PY+ DC+ LF DA LA LA+ A Subject 12579 LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDARLFGYDASLAAELAKMVA 12818
Nucleotide Sequence (334 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
254.5 | 1403.2 | 27% | 2.736e-67 | 90% | NC_004667 | |
168.8 | 277.5 | 32% | 1.675e-41 | 56% | NC_022072 | |
115.2 | 180.8 | 54% | 2.304e-25 | 44% | NC_029783 | |
99.1 | 159.3 | 25% | 1.549e-20 | 51% | NC_016509 | |
81.3 | 195.8 | 24% | 1.584e-16 | 39% | NC_001836 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10592 to 10924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.5 bits(549) | 0.0 | 108/111(97%) | 0/111(0%) | Plus/Minus |
Query 1 TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDTFPLIFCLITSTIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTP 333 TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASD FPLIFCLITSTIALSISLPPKKLSPTEKMTH+IFPFFLTNETSK PPPKSKTANNRSSTRDLAKE*RAAAVGSLTTP Subject 10592 TPPSTGIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTP 10924
Range 2: 10593 to 10922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.9 bits(539) | 0.0 | 108/110(98%) | 0/110(0%) | Minus/Plus |
Query 3 GVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 332 GVVNEPTAAALYSLAKSRVEDLLLAVFDFGGG FDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGK SDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG Subject 10593 GVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 10922
Range 3: 10592 to 10924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.9 bits(502) | 0.0 | 102/111(92%) | 0/111(0%) | Minus/Plus |
Query 1 RCC*RTDSRSPLFLS*VASRRPIISGFRLWGRSFRRLIR*EEGKYIMRHLFSGR*FLGW*RY**SYCGSYQAKDQRKSV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC 333 RCC*RTD RSPLFLS*VASRRPIISGF WGR FRRLIR*EEGKY MRHLFSG *FLGW*RY**SY GSYQ KDQRK V*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC Subject 10592 RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYPRRRGC 10924
Range 4: 10593 to 10922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 101/110(92%) | 0/110(0%) | Plus/Minus |
Query 3 TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRHFSFDLLLDNFHNSSINISTTQEIIAH*KDDA*YISLLLNE*DVESSSPKVENR***VFYSRLS*GIEGCGCRFVNNT 332 TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIR SFDLL DNFH+SSINISTTQEII H*KDDA*YISLLLNE*DVES SPK++NR***VFYSRLS*GIEGCG RFVNNT Subject 10593 TPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNT 10922
Range 5: 10591 to 10923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 102/111(92%) | 0/111(0%) | Minus/Plus |
Query 2 EVLLTNRQPQPSIP*LSRE*KTYY*RFSTLGEELSTSHSLRRREIYYASSFQWAIISWVVEILIELLWKLSSKRSKEKCLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV 334 EVLLTNR+PQPSIP*LSRE*KTYY*RF LGE LSTSHSLRRREIYYASSFQW IISWVVEILIEL WKLS+KRSKE+ LMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV Subject 10591 EVLLTNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGV 10923
Range 6: 10591 to 10767 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.7 bits(257) | 0.0 | 53/59(90%) | 0/59(0%) | Plus/Minus |
Query 158 HPRNYRPLKR*RIIYFPSS*RMRRRKLLPQSRKPLIIGLLLAT*LRNRGLRLSVR*QHL 334 HPRNY PLKR*RI+YFPSS*RMRRRK LPQ++KPLIIGLLLAT*LRNRGLR SVR*QHL Subject 10591 HPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL 10767
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11564 to 11890 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 67/109(61%) | 0/109(0%) | Minus/Plus |
Query 3 VVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 329 ++NEPTAAALYSLAKS ++D+L+AVFDFGGG FDVSFVKKKG+IL V++S GDNFLGGRDID A+ +K+K+ G V KL FVS++KED+SN+ ++ H++P G Subject 11564 IINEPTAAALYSLAKSGLDDMLIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKG 11890
Range 2: 11572 to 11889 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 59/106(56%) | 0/106(0%) | Plus/Minus |
Query 4 PPSTGIRCCVIALLLDKSSFIEDTNIPNLASDTFPLIFCLITSTIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGS 321 P G C LD SS I DT +L T P F L A SISLPPKKLSP E T I PFFLT +TSK PPPKSKTA N SS+ DLA E +AAAVGS Subject 11572 PFIVGTICVSTLGSLDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTAINISSSPDLASEYKAAAVGS 11889
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 10793 to 11119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 48/109(44%) | 0/109(0%) | Minus/Plus |
Query 3 VVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 329 +VNEPTAA L ++ S ++ + VFDFGGG FD+S + K+G +L VI + GDN+LGGRD+D I++ I ++ + I VS MKE +S+ A T+ +IP+E G Subject 10793 LVNEPTAAGLLGMSVSSNDNTVYGVFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG 11119
Range 2: 10792 to 11001 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 35/70(50%) | 0/70(0%) | Plus/Minus |
Query 121 LITSTIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGSLTT 330 LI I S SLPP+ LSP+ +T N FP F E SK PPPKSKT S D AAVGSLT+ Subject 10792 LIVFIIFASTSLPPR*LSPSAPITPNTFPLFNIIEMSKVPPPKSKTPYTVLSLLDTLIPNNPAAVGSLTS 11001
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10375 to 10590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 38/72(53%) | 0/72(0%) | Minus/Plus |
Query 114 VVNEPTAAALYSLAKSRVEDLLLAVFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK 329 ++NEPT+AALY + AVFDFGGG D+SF+ + N++ V+FS GDNFLGGRDIDRAIV+ ++++ Subject 10375 LINEPTSAALYGAVRGGALKETYAVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE 10590
Range 2: 10383 to 10571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 32/63(51%) | 0/63(0%) | Plus/Minus |
Query 133 TIALSISLPPKKLSPTEKMTHNIFPFFLTNETSKAPPPKSKTANNRSSTRDLAKE*RAAAVGS 321 TIALS+S PP+KLSP E T N+ SK PPPKSKTA S L +AA VGS Subject 10383 TIALSMSRPPRKLSPFENSTLTTLLNLDMNDISKVPPPKSKTAYVSFSAPPLTAPYKAADVGS 10571
Range 1: 9179 to 9394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 34/72(47%) | 0/72(0%) | Minus/Plus |
Query 42 VFDFGGGAFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKVSDAKLGIFVSSMKEDLSNN 257 VFDFGGG FDVS++KK G I+ +I + GD FLGGRDID+A+ E I QK D + ++ +S N Subject 9179 VFDFGGGTFDVSYIKKHGKIVSIIDTAGDLFLGGRDIDKALAEFISQKTGHSCDDLFINHLKETVTPGVSKN 9394
Range 2: 9110 to 9148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 7/13(54%) | 0/13(0%) | Minus/Plus |
Query 291 VVNEPTAAALYSL 329 ++NEP+AAA++ L Subject 9110 IINEPSAAAMHQL 9148
Nucleotide Sequence (673 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
467.1 | 2702.3 | 34% | 7.409e-131 | 79% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 8498 to 9115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
467.1 bits(1013) | 0.0 | 199/206(97%) | 0/206(0%) | Plus/Plus |
Query 1 VFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*G*YRWHSFLKWVLKTQFFNLCVLFVLFTP*G*DRWNMYSRGFFFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHAALCVRRACIWASALGQRRSGD*QP 618 VFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP* *YRWHSF KWVLKT+ F LCVLFVLFTP*G DRWNMYSRG FFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHAALCVRRACIWASALGQRRSGD*QP Subject 8498 VFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFSKWVLKTKIFYLCVLFVLFTP*GQDRWNMYSRGSFFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLHLRCAGSVGFGLSVPNILLGDVQESSLVCLWGMTGATRFRTVAAM*VVHAALCVRRACIWASALGQRRSGD*QP 9115
Range 2: 8584 to 9153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
445.5 bits(966) | 0.0 | 183/190(96%) | 0/190(0%) | Minus/Minus |
Query 87 YLQDLALSALRRAGC*SPDRRCPRALAQMHARLTHNAACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKKNPLLYMFHRSYPHGVNKTKSTHKLKNWVFNTHFKKECHRY*PHGWHA 656 YLQDLALSALRRAGC*SPDRRCPRALAQMHARLTHNAACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKK+PLLYMFHRS PHGVNKTKSTHK K VFNTHF+KECHRY* HGWHA Subject 8584 YLQDLALSALRRAGC*SPDRRCPRALAQMHARLTHNAACTTYIAATVLNLVAPVIPQRHTKLDSCTSPKRIFGTLRPNPTLPAHLKCRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKKDPLLYMFHRSCPHGVNKTKSTHK*KILVFNTHFEKECHRY*LHGWHA 9153
Range 3: 8499 to 8540 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 14/14(100%) | 0/14(0%) | Minus/Minus |
Query 2 PFGINLTKNRGTET 43 PFGINLTKNRGTET Subject 8499 PFGINLTKNRGTET 8540
Range 4: 8498 to 8980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
364.4 bits(789) | 0.0 | 155/161(96%) | 0/161(0%) | Minus/Minus |
Query 1 TH*TRLLYIA*KDIWHTKTKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVRSDKSRKGNPRLKEKPSTVHVPPVLSSRCEQNKKYTQIKKLGL*YPLQEGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKH 483 TH*TRLLYIA*KDIWHT+TKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHV SDKSRKGNPRLKE+PSTVHVPPVLSSRCEQNKKYTQIK GL*YPL+EGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKH Subject 8498 TH*TRLLYIA*KDIWHTETKSNTSSAP*VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVCSDKSRKGNPRLKERPSTVHVPPVLSSRCEQNKKYTQIKNFGL*YPLREGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKH 8980
Range 5: 9024 to 9152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 43/43(100%) | 0/43(0%) | Minus/Minus |
Query 527 TFRT*HFQRSVEPAASHLTDAALGHSPKCMHVLRTMPHARLT* 655 TFRT*HFQRSVEPAASHLTDAALGHSPKCMHVLRTMPHARLT* Subject 9024 TFRT*HFQRSVEPAASHLTDAALGHSPKCMHVLRTMPHARLT* 9152
Range 6: 8499 to 8984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
323.6 bits(700) | 0.0 | 156/162(96%) | 0/162(0%) | Plus/Plus |
Query 2 CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS*SGY*RPNFLICVYFLFCSHREDKTGGTCTVEXXXXXXXXXXXXXXERTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLVLVCQISF*AMYRSLV*CVF 487 CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS SGY*RP F ICVYFLFCSHREDKTGGTCTVEG SLSLGLPFLLLSE TCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLV VCQISF*AMYRSLV*CVF Subject 8499 CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPSRSGY*RPKFFICVYFLFCSHREDKTGGTCTVEGLSLSLGLPFLLLSEHTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT*GALEVLDLVSVCQISF*AMYRSLV*CVF 8984
Range 7: 9016 to 9153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 46/46(100%) | 0/46(0%) | Plus/Plus |
Query 519 CSCYVSRACGIVRKTCMHLGECPRAASVR*LAAGSTER*KC*VLKV 656 CSCYVSRACGIVRKTCMHLGECPRAASVR*LAAGSTER*KC*VLKV Subject 9016 CSCYVSRACGIVRKTCMHLGECPRAASVR*LAAGSTER*KC*VLKV 9153
Range 8: 8689 to 8961 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 88/91(97%) | 0/91(0%) | Plus/Plus |
Query 192 RIRPVEHVQ*RVFL*VSGYPSYSCRSVHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWIWS*CAKYPFRRCT 464 R RPVEHVQ*RVFL*VSGYPSYSCRS+HVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWIWS CAKYPFRRCT Subject 8689 RTRPVEHVQ*RVFL*VSGYPSYSCRSIHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPALKVRWKCWIWSQCAKYPFRRCT 8961
Range 9: 8500 to 8643 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 47/48(98%) | 0/48(0%) | Plus/Plus |
Query 3 VSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVRLIPVALLLEVGIKD 146 VSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSV+LIPVALLLEVGIKD Subject 8500 VSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKD 8643
Range 10: 9027 to 9155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 43/43(100%) | 0/43(0%) | Plus/Plus |
Query 530 CKSCMRHCA*DVHAFGRVP*GSVGQVTSSRLYGALKVLGPEGT 658 CKSCMRHCA*DVHAFGRVP*GSVGQVTSSRLYGALKVLGPEGT Subject 9027 CKSCMRHCA*DVHAFGRVP*GSVGQVTSSRLYGALKVLGPEGT 9155
Range 11: 8583 to 8984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.0 bits(655) | 0.0 | 128/134(96%) | 0/134(0%) | Minus/Minus |
Query 86 KDTLN*TPVHRLKGYLAH*DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCTLRQE*EG*PET*RKTLYCTCSTGLILTV*TKQKVHTN*KIGSLIPTSRRSATGINLTDGTP 487 KDTLN*TPVHRLKGYLAH*DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTC LRQE*EG*PET*RKTLYCTCSTGL+LTV*TKQKVHTN K SLIPTSRRSATGIN TDGTP Subject 8583 KDTLN*TPVHRLKGYLAH*DQIQHFQRTLSAGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCMLRQE*EG*PET*RKTLYCTCSTGLVLTV*TKQKVHTNKKFWSLIPTSRRSATGINFTDGTP 8984
Range 12: 9029 to 9070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 14/14(100%) | 0/14(0%) | Minus/Minus |
Query 532 NACTSYAQCRMHDL 573 NACTSYAQCRMHDL Subject 9029 NACTSYAQCRMHDL 9070