Queries
Nucleotide Sequence (373 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
264.1 | 917.9 | 38% | 4.068e-70 | 51% | NC_001948 | |
49.6 | 49.6 | 11% | 1.474e-05 | 48% | NC_005343 | |
49.2 | 49.2 | 11% | 2.025e-05 | 49% | NC_008266 | |
52.4 | 52.4 | 10% | 2.192e-06 | 47% | NC_006550 | |
48.3 | 48.3 | 10% | 3.822e-05 | 47% | NC_002468 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2534 to 2893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.1 bits(570) | 0.0 | 102/120(85%) | 0/120(0%) | Plus/Plus |
Query 8 VTKTRNPVEGNHCSLTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFVSPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCYSCHNFHKFKDLINN 367 ++K+RN V GNHCSLTI P+EFFEMPRGMQ N+FHGVSNC GRVSLTFRRQKLEDDD IF++PQVPIE NHEKLDR+MWQMGLHGIKKSIS+NGTSFTSDLCSC+SCHNFHKFKDLINN Subject 2534 ISKSRNLVGGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINN 2893
Range 2: 2548 to 2898 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 83/117(71%) | 0/117(0%) | Minus/Minus |
Query 22 LGLFIRSLNL*KL*QE*QEQRSDVKLVPLIEMDFLIP*RPICHMXXXXXXXXXSMGT*GLTKIWSSSSSFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSLGSIVRLQWFPSTGF 372 L L +RSLNL*KL QE QE RS+VKLVP IE+DFLIP*RPICH+ RSSFS* SMGT G KI SSSS+FWR V DT P QLETPWK L C+P GISKNS G IVRLQ P T F Subject 2548 LKLLMRSLNL*KLWQEKQEHRSEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMKIKSSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPPTKF 2898
Range 3: 2531 to 2893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 67/121(55%) | 0/121(0%) | Minus/Minus |
Query 5 IVYQILEFVKVMTRIARTKV*CKACAID*NGFLDSMKAHLPHVSIKLLMILLNGHLRANKNLVIIFQFLASECQRHSPTQTIGNAMEKVALHTSRHLKKLARFNCQAAVVSFNWISSLSNS 367 ++ +ILEF+KV+ R R V* K AI N FL+SMKAHLPH S+KL MI LNGHL ++ +IIFQ LA + QR+ P +TIGN ME +ALH RH +KL NCQAA+++ N IS L+NS Subject 2531 VIDEILEFMKVVARETRA*V*GKTRAIHRNRFLNSMKAHLPHTSVKLFMIELNGHLWIYEDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITPNQISRLTNS 2893
Range 4: 2547 to 2882 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 58/112(52%) | 0/112(0%) | Minus/Minus |
Query 21 DP*ICESYDKNSKNKGLM*SLCH*LKWIS*FHEGPSATCFDQASHDFAQWALEG*QKFGHHLPVFGVGMSKTLSHSDNWKRHGKSCSAYLEASQKTR*VQLSGCSGFLQLDF 356 DP*I ES K +K+ GL *+ CH K IS*FHEGPSAT F QA HD AQWA + HHLP FG S + + NWK HG +C A A +KT QLSGC+ + Q +F Subject 2547 DP*IYESCGKRNKSIGLR*NSCHS*K*IS*FHEGPSATYFGQAFHD*AQWAPVDL*RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQPNF 2882
Range 5: 2727 to 2882 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 33/52(63%) | 0/52(0%) | Plus/Plus |
Query 201 KCPLSKIMRSLIETCGRWAFMESRNPFQSMAQALHQTFVLAILVITFTNSRI 356 +CPLS IM+SL E CGRWAFME RN F MA+ L QT+ L L TF NSRI Subject 2727 RCPLSSIMKSLTEVCGRWAFMELRNLFL*MARVLPQTYALVSLATTFINSRI 2882
Range 6: 2535 to 2705 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 29/57(51%) | 0/57(0%) | Plus/Plus |
Query 9 LLRLEIQLKETTAA*QLNLASFLRCLEVCRATFSMAFPIV*VGECL*HSDAKNWKMM 179 L+ EI L AA*QL SF +CL C A SM FPIV G * AK+WKMM Subject 2535 LVSREIWLGVIIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMM 2705
Range 7: 2569 to 2883 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 56/105(53%) | 0/105(0%) | Plus/Plus |
Query 43 LQPDN*T*RVF*DASRYAEQLFPWRFQLSEWESVFDIPTPKTGR**PNFC*PSSAH*AKS*EA*SKHVADGPSWNQEIHFNQWHKLYIRPXXXXXXXXXXQIQGS 357 LQPDN VF +A +A QL PW FQL + D+ PK GR** + + AH*A+S*+A* K+VADGPSWN EI+F +WH+ Y+RP+ L L LS IQGS Subject 2569 LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR**FDLHKSTGAH*AQS*KA*PKYVADGPSWN*EIYFYEWHEFYLRPMLLFLLPQLS*IQGS 2883
Nucleotide Sequence (1316 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
979.8 | 3198.6 | 35% | 0 | 39% | NC_001948 | |
259.0 | 576.0 | 32% | 1.165e-105 | 35% | NC_018714 | |
194.4 | 703.9 | 16% | 5.44e-92 | 33% | NC_009892 | |
195.8 | 588.0 | 16% | 3.625e-104 | 36% | NC_014821 | |
191.2 | 667.1 | 18% | 2.181e-102 | 28% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3323 to 4636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
979.8 bits(2132) | 0.0 | 403/438(92%) | 0/438(0%) | Minus/Plus |
Query 2 LSTDGLALKAGIRSFVESESTVDPALSSLTIQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT 1315 LSTDGLALKAGIRSFVESE V P LS+ I KQL ENAYAENEMIALFCIRHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREV+VLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDD CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRL+EGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMT Subject 3323 LSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMT 4636
Range 2: 3466 to 4635 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
659.5 bits(1433) | 0.0 | 312/390(80%) | 0/390(0%) | Plus/Minus |
Query 3 VMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSARSKLGKYVIFDPFKESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRIPHRGHSLSPNFQLTSYSGVIMISLT*CLMQN 1172 V+EPFLK G+L+SNIGFTNL LS LYLY PS+SL+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA TL SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPV+PPSKHP +FSARSKLGK VI DPF E +SRADRLTFR+SSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP SHLAQMSKASKASAKYIM RPPP* SSSK+*LVLGLH+* TSTSRLPSA+A+AVIMQP GA GWK* D + RIPHRGHS SPNFQLTSYSGVI I LT C MQN Subject 3466 VIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQN 4635
Range 3: 3325 to 3402 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 18/26(69%) | 0/26(0%) | Plus/Minus |
Query 1236 ERAGSTVDSLSTNDLIPAFKARPSVL 1313 ER+G T SLST D IPAF+A PSVL Subject 3325 ERSGLTKRSLSTKDRIPAFRASPSVL 3402
Range 4: 3323 to 4636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
463.4 bits(1005) | 0.0 | 216/438(49%) | 0/438(0%) | Plus/Minus |
Query 2 SHGAFFEVTG*S*IKHWIYEPPTLQVVPI*LSFDQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*INVTRGE*LNFIKDHAMTSL*ACNFSKKDFKGNDIPTLLL*FACLHHLTLIIHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCAKHDCQFSLFDVRSRHSSKPRF*IIKFLITYHAS*TSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPVTNLFDMPNVFIRYVKQSRYAPAWINNLNFTIDITFGTDVESFKSFC*IHHVQTPPLT*FFKNVIGAGST*VIKNLYLTPSKC*CNSCDHAAIKRGTRLEMIGL*TQNST*GPLTFPKLPAHLIFWCYNDQPHMMPNAE*SNHFILCVSIFXXXXXXXXXXXXWVNC*LTFHKRPYSCLQS*TICAK 1315 SH A FEVT S* +HW+++PP V+PI + Q +YVTL S QN I LR+ICALT ITSK +ES+T NK+ *I+V+R + L+ IK+H + SL +CNFSK++ K IP LL* C + IIHF++ FD*IC*S +K Y+F+ R HE LV ETL SPKC KHD QF ++ SR++ KPRF I + LITY+AS* Q L+ F PLK W++ Y P+ K+++ S + Q IH Y LR +T +MP V I YVKQ R IN+ N +I ITF +V+ KSF *IHHV+ P LT KN+I AGST +I ++ TPSKC* N CDHA I+ G LE+I +NST*GPLTFP+ P + IFWC + +P+++PNAE* +H IL +SI +L *K W LT H+R + L +I AK Subject 3323 SHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK 4636
Range 5: 3322 to 4635 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
356.6 bits(772) | 0.0 | 204/438(47%) | 0/438(0%) | Minus/Plus |
Query 3 S*HRWSSFEGRNKVVCGK*VNS*PSSFKPNYTEATWRKCLRRE*NDCFILH*ASCEADHYNTRI*GELEVWGK*VAPMWNSVFKVQSFPTLCPS*WLHDHSYCISTWKA*GRGS*LLM*TQHQSHF*RTMSRGGSEHDVFSRSF*SFRHLCQM*CQW*N*GY*SRRAHICSV*HNE*TH*ACRKDW*RASKYKGG*AAKS*TISS*PAFFERVKDNIFSKF*AGGKTSGVLAGRFNWRDK**EI**FKTLACWSVYF*HQTKRIDSRAWHIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQKGPGNG**V*GGEGRQIKEGGLGCRYL*SLS*KSYRPKGWSLRDL**SSAIPPWLH*SMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEAGRRKVI*VQLGESEVRKSNV*FKITL*LQKRLHD 1316 +*H W+ +GR + G+* SF P+ R+CL RE*+D ILH A +A +TRI* LE+ G+*VAPMWNS+ ++S PT+ P+ WLHDHS+C STWKA* L +*TQH S+F* +S G HDVFS SF* HL M* +W +* *S + C V*HN * H AC ++ * S++K G* A+ I F E V +N+ K *AG K + + A NWR K**E+ * KTLA W +Y+*+ K ID RAW+IWGW+EF +QE HE++* I N+C + SKFNQK NG**+ R +KEG +GC * *KS R +GW L D ** + W+H SM + Y+ * FH +CW*S+SKHI* +K FG * E*H + +*V + EV + NV K + LQK L D Subject 3322 T*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDD 4635
Range 6: 3504 to 4637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
300.3 bits(649) | 0.0 | 180/378(48%) | 0/378(0%) | Plus/Minus |
Query 1 QSWSLF*SYRVILNQTLDLRTSDSPSCTYMTFLRPASICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDQCNQGGIAELHQRSRNDQPLGL*LF*ERLQR*RHPNPPSLICLPSPPYTHHPFPGPF*LNLLEPA*VRQMLQIFLQIXXXXXCIGNSFQPQMCQARLSILFV*CQK*TLQQAKVLNH*ISHHLSRQLNLPASTPEVFPPAQNLENMLSLTRSKKAGQELIV*LFAAHPPLYFEARYQSFRHA*CVHSLCQTEQICARLD**PQFXXXXXIWHRCRKLQKLLLNTSCSDPPLDIVLQKCDWCWVYISN*EPLPHAFQVLMQ*L*SCSH*EGHKVGNDWTLNTEFHIGATHFPQTSSSPHILV 1134 QS S F*S +L +TL +TS TY + +CHS Q PK F +HMCFD DHQQ +*K H * ID+C Q HQ+S + QP L LF* + Q+ HP PSL L ++HPF F*LNLL+ +Q L+I+ Q S*+SC NS QPQM QAR SI * Q * Q+AKVL+H* SHHL RQL A+ F PAQ+L + L T S K + I * A HP L E Y +HA C H LCQT Q D* Q H +HI +C++ QKL LNTSC P D QK D CWVY N HAFQVL Q L*SC+H G VG+D EFHIGATH P+ S+ HILV Subject 3504 QSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV 4637
Range 7: 3324 to 3491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 22/56(39%) | 0/56(0%) | Plus/Minus |
Query 1147 ASHDA*CRIKQSFHSLRKHFLQVASV*LGLKELGQLLTHFPQTTLFLPSKLDHLC* 1314 A A CRI +S HS KH L + LGLK+L H P+ + P H C* Subject 3324 ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC* 3491
Range 8: 3504 to 4190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.6 bits(449) | 0.0 | 115/229(50%) | 0/229(0%) | Minus/Plus |
Query 448 HQNMR*AGSLGKVSGPYVEFCV*SPIISNLVPLLMAA*SQLLHQHLEGVR*RFLITYVDPAPITFLKNYVKGGV*T*CI*QKLLKLSTSVPNVMSMVKLRLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLSGRKNFRGACWEV*LA**VMRNLMIQNLGLLECLLLTSNKEN*QSCLAHLGLERVSYTRAS*RDLKEN 1134 HQNM+ G+ GKVSGPYVEF + I SN P M A*SQ L QHLEGV+ I VDPA I FL+++V+ G T*CI* KLL+ T NV+ M +L+ LI+ +L CLT* M+T GM ++ V L+ *+WM+C + +D F * G +* Q LSG K+ + C *LA *VMR+ ++QNLG L LLL ++ N* SCL HLGL RVS TR S*+ L+ N Subject 3504 HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN 4190
Range 9: 4467 to 4637 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 30/57(53%) | 0/57(0%) | Minus/Plus |
Query 1 KAHMILKKIELFWVLNRVTY*GWSKESHIGTTWRVGGS*IQCLIQDYPVTSKKAP*L 171 KAHM K+I FW L+RVTY + IG T + GG * QC QD VTSK+A *L Subject 4467 KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*L 4637
Range 10: 4224 to 4412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 31/63(49%) | 0/63(0%) | Minus/Plus |
Query 226 QIQSKGTWKWMMSVRW*RQANQRRRVGMSLPLKSFLEKLQA*RLVIA*SLMKFSYSPLVTLIY 414 QIQSK KWM++ + +Q QRR+ GM L+ LEKLQ *RL * LM+ S L T IY Subject 4224 QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY 4412
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3466 to 4299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 115/278(41%) | 0/278(0%) | Minus/Plus |
Query 392 IQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 1225 + KQL N +AE E +A FC + +RL ++ E +W F E L + NHF+PC P+NGC+I AIASAL RREV+VL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L G TGV+ K A + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3466 LSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4299
Range 2: 4360 to 4689 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 57/110(52%) | 0/110(0%) | Minus/Plus |
Query 2 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT 331 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L + I +AGDPCQS YDS DR I +SDI+R + G+SY++N+ S+RF NP+F RLPCN K +T Subject 4360 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLT 4689
Range 3: 3567 to 3917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 41/117(35%) | 0/117(0%) | Plus/Minus |
Query 774 CLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRIPHRGHSLSPNFQLTS 1124 C CSF N A + P L SP S L Q+ S + + + +P P +SSK GL +TSTS SA+AIA++ PL G QG K L ++ + S N Q+ S Subject 3567 CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS 3917
Range 4: 4164 to 4265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 18/34(53%) | 0/34(0%) | Plus/Minus |
Query 426 LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVN 527 LG+T V FP D M L R+LFP PNVP +N Subject 4164 LGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN 4265
Range 5: 4503 to 4670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 27/56(48%) | 0/56(0%) | Plus/Minus |
Query 21 KLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPA 188 KLQG+L IGF NL L L L P L MSL KI S S L GSPA Subject 4503 KLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA 4670
Range 1: 3326 to 4030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 83/235(35%) | 0/235(0%) | Minus/Plus |
Query 515 KQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVV 1219 +Q+ + +AE E +A FC + ++L +++ V+W F ++ L + NHF PC P+NGC++ AIASALGRRE++VL L +P ++E+ C G G + L FE F I A+ D G + +N G+ISA F + EH+ H++++ S + +L V +SAL LL +NGS+I+Y PS +RA+ L L G TGV+ E +N + + G+ + +++ T++ Subject 3326 RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII 4030
Range 2: 4208 to 4516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 59/103(57%) | 0/103(0%) | Minus/Plus |
Query 23 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCN 331 V+TFE+FL + +K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQS YDS+ DR + SDI+ ++ GKSYRYN+ S+RF NP+F SRLPC+ Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCS 4516
Range 3: 4030 to 4107 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 12/26(46%) | 0/26(0%) | Minus/Plus |
Query 435 WHIWGWKEFPIQELHEEI*RKICNIC 512 W++W W E I E+H +I RK N C Subject 4030 WYLWMW*EHSI*EVHIKITRKSYNFC 4107
Range 4: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 32/68(47%) | 0/68(0%) | Minus/Plus |
Query 344 SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKK 547 ++I +R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K + GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 5: 4267 to 4371 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 18/35(51%) | 0/35(0%) | Minus/Plus |
Query 168 DL**SSAIPPWLH*SMSSCYSQ*RFHLSCW*SLSK 272 D ** SA+P WL *S S + * SCW SL K Subject 4267 DH**DSALPSWLS*SHSGLH*L*HQPCSCWRSLPK 4371
Range 6: 4214 to 4495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 31/94(33%) | 0/94(0%) | Plus/Minus |
Query 44 KHWIYEPPTLQVVPI*LSFDQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*INVTRGE*LNFIKDHAMTSL*ACNFSKKDFKG 325 K I +P T +VP+ L+ V + + +I L I+ L I+SK V A+ + I +TR E LN I DH + L KK KG Subject 4214 KDRIPKPLTQYIVPVALTIQNVDDVRIRIGKKVTIILAIVVTLAGISSKNKVDVRASADQNEIKITRREELNLINDHRVPLLNGSYSHKKQLKG 4495
Range 7: 3466 to 3633 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 28/56(50%) | 0/56(0%) | Plus/Minus |
Query 912 RPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRI 1079 +P P +SS L GL K RTS S LP ADAIA+ QPL G G K*L + R+ Subject 3466 KPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV 3633
Range 8: 4030 to 4128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/33(55%) | 0/33(0%) | Plus/Minus |
Query 414 ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVP 512 AR LGET V FP D M L R L P P VP Subject 4030 ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP 4128
Range 9: 4207 to 4365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 26/53(49%) | 0/53(0%) | Plus/Minus |
Query 174 QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT 332 QGSPAR S + R RS *PGG S* SS IT P +R +SKV+T Subject 4207 QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST 4365
Range 1: 3469 to 4095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 84/209(40%) | 0/209(0%) | Minus/Plus |
Query 599 IQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 1225 + KQL N +AE E +A FC + ++L ++ E +W F E L + NHF+PC P+NGC+I AIASAL RREV+VL L +P+ +F+E+ +G G ++ L+ FE F IC D GE+ ++N GGRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L L G TGV+ Subject 3469 LSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL 4095
Range 2: 4363 to 4692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 56/110(51%) | 0/110(0%) | Minus/Plus |
Query 2 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT 331 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YDS DR I +SDI+R++ G++Y++N+ S+RF NP+F RLPCN K +T Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLT 4692
Range 3: 4153 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 392 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 541 + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4153 VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 4: 3570 to 3911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 41/114(36%) | 0/114(0%) | Plus/Minus |
Query 783 CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*LDFKHRIPHRGHSLSPNFQLTS 1124 CSF N A + PP L SP S L Q+ K SK+ + + +P P +SS GL + +TSTS A+A+A++ QP G QG K*L + ++ S N Q+ S Subject 3570 CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS 3911
Range 5: 4161 to 4280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 20/40(50%) | 0/40(0%) | Plus/Minus |
Query 414 ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 533 AR LGET V FP D M L R+L P P VP N L Subject 4161 ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL 4280
Range 6: 4506 to 4691 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 28/62(45%) | 0/62(0%) | Plus/Minus |
Query 3 VMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPA 188 V KL G+L + GF N L L L P L MSL KI LS S L*QGSPA Subject 4506 VSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA 4691
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3465 to 4091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.2 bits(411) | 0.0 | 82/209(39%) | 0/209(0%) | Minus/Plus |
Query 599 IQKQLGENAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVEVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 1225 + KQL N +AE E +A FC + +RL ++ E +W F E L + NHF+PC P+NGC+I AI+SAL RREV+VL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG+++ Y PS +RA L G TGV+ Subject 3465 LSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL 4091
Range 2: 4359 to 4688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 56/110(51%) | 0/110(0%) | Minus/Plus |
Query 2 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLVEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMT 331 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R++ G+SY++N+ S+RF NP+F RLPCN K +T Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLT 4688
Range 3: 4149 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 392 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 541 + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4149 VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 4: 3629 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 38/93(41%) | 0/93(0%) | Plus/Minus |
Query 783 CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIMFRPPP*HSSSKM*LVLGLHK*LRTSTSRLPSADAIAVIMQPLRGAQGWK*L 1061 CSF N A + P L SP S L Q+ K S + M +P P +SSK GL +TSTS SA+ IA+I P G QG K*L Subject 3629 CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*L 3907
Range 5: 4359 to 4688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 31/110(28%) | 0/110(0%) | Plus/Minus |
Query 2 SHGAFFEVTG*S*IKHWIYEPPTLQVVPI*LSFDQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*INVTRGE*LNFIKDHAMTSL*ACNFSKKDFKGND 331 S EV S +KHWI EP T + + + +T ++++ I +I LTR+TS + + K I + + LNFI +++T L A + FK D Subject 4359 SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD 4688
Range 6: 4157 to 4264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/36(50%) | 0/36(0%) | Plus/Minus |
Query 426 LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 533 LGET V FP D M L ++LFP PNVP ++ L Subject 4157 LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL 4264
Range 7: 4502 to 4672 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 29/57(51%) | 0/57(0%) | Plus/Minus |
Query 18 LKLQGNLESNIGFTNLRLSKLYLYDFPSTSLNMSLCSAPKIALSF*ESYVL*QGSPA 188 L+LQGNL N GF NL L L L P L +SL K+ LS +S L*QGSPA Subject 4502 LRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA 4672
Nucleotide Sequence (357 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
241.2 | 763.5 | 28% | 3.079e-63 | 39% | NC_001948 | |
144.5 | 263.0 | 46% | 3.859e-34 | 31% | NC_011525 | |
144.9 | 194.1 | 35% | 2.809e-34 | 49% | NC_028868 | |
143.6 | 241.0 | 52% | 7.284e-34 | 36% | NC_005343 | |
141.7 | 213.4 | 26% | 2.595e-33 | 49% | NC_014730 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 476 to 829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.2 bits(520) | 0.0 | 97/118(82%) | 0/118(0%) | Plus/Plus |
Query 3 ISSSDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK 356 ISSSDKS+ VVS+KGIGDS++L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+I+ Q+LFAPDGNW EMYSQPLS RYLLK Subject 476 ISSSDKSSQVVSRKGIGDSNTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQLLFAPDGNWNEMYSQPLSCRYLLK 829
Range 2: 514 to 828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 81/105(77%) | 0/105(0%) | Minus/Minus |
Query 41 LSRYLLDSGCEYISHQLPSGAKSI*PSEILYW*AQGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTNFLSESESPIPF 355 LSRYL D GCEYIS QLPSGAKS ILYW*AQG RLSGEPT SGGITAVA+SMLGL TS+K++RS IDQ* ISS RKRFLAPVEITRGTN S ESP+PF Subject 514 LSRYLHDKGCEYISFQLPSGAKSSWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF 828
Range 3: 476 to 829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 51/118(43%) | 0/118(0%) | Minus/Minus |
Query 3 LKQIPT*QWL*IHFTPITIRGKEHLTLRNSILVSPRI*AFRRANKDFRGYYSRCKKHVGSDHLQKGNEITYRPVMDLIMKEKISCTGGDYTRNQLFERVRITDPLLADNMVRLVTRAY 356 L+Q+ *Q L*+H P+ I +E L + ILV PR+ RAN+ F Y C++H ++QK ++IT PV++LIM++KI T G+YT +Q E VRIT+ L DN+ VTR Y Subject 476 LEQVSA*QRL*VHLIPVAIWCEEQLVAIDFILVGPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQSPECVRITNALSTDNLT*FVTRTY 829
Range 4: 477 to 830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 49/118(42%) | 0/118(0%) | Minus/Minus |
Query 4 P*ADTYLTVVVNTFHTNYHPGQRAFDPQKFYTGKPKDLGFQESQQGFQGVLQPLQEACWV*PPPER**DHV*TSNGSHHEGKDFLHRWRLHEEPTF*ASQNHRSPSC*QHG*TCH*SL 357 P*A +T VV+T H++ H +RA FYTG+PK ESQ L L AC P+ * DH TS+ SHH KD H W+LH P NH+ P *Q CH*+L Subject 477 P*AGICMTKVVSTSHSSCHLVRRAVGCH*FYTGRPKG*DSLESQPALLEGLLQLPRACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPISGVC*NHQCPFY*QPDLICH*NL 830
Range 5: 478 to 777 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 45/100(45%) | 0/100(0%) | Plus/Plus |
Query 5 KL**QV*PCCQQEGDR*F*LAQKVGSSCNLHRCKKSFPS**DPLLVYT*SHYLSGGGQTQHASCNGCNTP*NPCWLS*KPKSLGLPV*NF*GSNALCPGW 304 K **Q+ CQ +G *F* ++G +CN HRC++SF +**D LLV *S G Q +HA N N + WLS + LGLPV*N AL W Subject 478 KF**QIKSGCQ*KGHW*F*HTPEIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHALGNCSNPSRSAGWLSRES*PLGLPV*NQWQPTALRTRW 777
Range 6: 477 to 671 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 30/65(46%) | 0/65(0%) | Plus/Plus |
Query 4 *ALVTSLTMLSARRGSVILTRSKSWFLV*SPPVQEIFSFMMRSITGLYVISLPFWRWSDPTCFLQ 198 * LVT+ LS R VILT S W V* P V IF MMR TG VI FW C Q Subject 477 *VLVTNQVRLSVERALVILTHSGDWSHV*FPQVPGIFFCMMRFTTGQLVI*SIFWTLPSQACSWQ 671
Range 1: 489 to 842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 59/118(50%) | 0/118(0%) | Plus/Plus |
Query 3 ISSSDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK 356 + SS + +KG D L++LVP ++ A+NLFLHDE+HYW+ RDLITFLEV++P+ LL T V PPE+L G+ +SLN W Y YR+ + ++ F PDG E Y QPLS YLL+ Subject 489 VRSSASYPELCRRKGELDGAVLRELVPELMIKSAKNLFLHDELHYWTHRDLITFLEVLKPDKLLGTLVYPPELLKGAKKSLNSWCYTYRVDKDKLFFYPDGVHSEGYEQPLSGGYLLE 842
Range 2: 530 to 820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 43/97(44%) | 0/97(0%) | Minus/Minus |
Query 44 SGCEYISHQLPSGAKSI*PSEILYW*AQGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTNFLSESESPIP 334 +GC S PSG K+ LY * Q F+L P SGG T V S+ G +TS+KV+RSR Q* SS + RFLA + I GTN L+ + S P Subject 530 NGCS*PSEWTPSG*KNNLSLSTLYV*HQEFKLFFAPFSNSGG*TKVPNSLSGFSTSKKVIRSRWVQ**SSSCKNRFLALLIINSGTNSLNTAPSSSP 820
Range 3: 561 to 839 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 29/93(31%) | 0/93(0%) | Minus/Minus |
Query 75 KQIPT*QWL*IHFTPITIRGKEHLTLRNSILVSPRI*AFRRANKDFRGYYSRCKKHVGSDHLQKGNEITYRPVMDLIMKEKISCTGGDYTRNQ 353 +++ QWL + F I K+ +SI V+PR+ F R FR ++ V +LQ+GN+I P+M LI++E I R+Q Subject 561 EEVTATQWLLVAFRMDAIWIKKQFVFVHSICVAPRVQTFLRTL*QFRWVN*GAQQFVWLQYLQEGNQIPMGPIMKLIVQE*ILSAFNHQLRHQ 839
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 482 to 829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.9 bits(310) | 0.0 | 59/116(51%) | 0/116(0%) | Plus/Plus |
Query 9 SSDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK 356 SS + +++ SKK + + +LK+LVP V + RN FLHDE+HYWS +DL+ FL+ V P+ L+AT V PPEIL G+ ESLNPW Y + ++ F PDG E Y+QPLSS Y+LK Subject 482 SSKQIDNLCSKKSLSECGTLKELVPLVKMSKKRNFFLHDELHYWSPQDLMLFLDSVNPDHLVATVVFPPEILAGAKESLNPWCYSFHRQGSKLTFFPDGVQSESYTQPLSSGYILK 829
Range 2: 547 to 723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 29/59(49%) | 0/59(0%) | Minus/Minus |
Query 74 GFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTN 250 GFRLS P ISGG T VA GLT S+ +RS Q* SS +K+FL + +T GT+ Subject 547 GFRLSLAPANISGGKTTVATK*SGLTESKNSIRSCGLQ**SSSCKKKFLFLLILTSGTS 723
Range 1: 484 to 828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 60/115(52%) | 0/115(0%) | Plus/Plus |
Query 12 SDKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLK 356 S +S +++K G S++L LVP +IS AR LF+HDE+HYWS DL FL+VV+P M+LAT V PPE+L GS SLNPW Y++ I + ++LF PDG E Y+QP+ YLLK Subject 484 SKQSGGLLAKHGGFSSETLSTLVPSLISVKARKLFIHDELHYWSKNDLRCFLQVVKPEMVLATLVYPPELLAGSKISLNPWCYEFDIYKDRLLFYPDGVRSEGYNQPVGGGYLLK 828
Range 2: 549 to 725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 30/59(51%) | 0/59(0%) | Minus/Minus |
Query 77 QGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGT 253 QGF EP R SGG T+VA ++ G TT RK RS DQ* SS FLA I GT Subject 549 QGFNDIFEPARSSGGYTSVANTISGFTTCRKHRRSFFDQ*CNSSCINSFLAFTLIKLGT 725
Range 3: 592 to 822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 28/77(36%) | 0/77(0%) | Minus/Minus |
Query 120 QIPT*QWL*IHFTPITIRGKEHLTLRNSILVSPRI*AFRRANKDFRGYYSRCKKHVGSDHLQKGNEITYRPVMDLIM 350 QIP L I FTP T+R K+ L + LV+PRI + R + R + R + H+G +L + ++ RPV+ IM Subject 592 QIPPTHRLVITFTPHTVRVKKQAILVDIKLVAPRIQ*YFRTG*ELRRVHQRGQYHLGFHNL*ETPKVILRPVV*FIM 822
Range 1: 548 to 838 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 54/97(56%) | 0/97(0%) | Plus/Plus |
Query 63 SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLL 353 +L+ LVP + A++LFLHDE+HYW +DLITFLEV+ P +LL T V PPE+LVG+ SLNPW Y + I +G++LF PDG E Y QPL YLL Subject 548 TLRDLVPNISRVKAKHLFLHDELHYWREKDLITFLEVINPEVLLGTVVFPPELLVGAKRSLNPWCYHFEIEDGKLLFFPDGERSEGYEQPLRGGYLL 838
Range 2: 553 to 816 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 43/88(49%) | 0/88(0%) | Minus/Minus |
Query 68 GCEYISHQLPSGAKSI*PSEILYW*AQGFRLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ*WISS*RKRFLAPVEITRGTNFL 331 GC Y S PSG KS PS I W* GF+L PT SGG T V GL TS+ VMRS Q* SS R R LA + GT L Subject 553 GCSYPSDLSPSGKKSNLPSSISKW*HHGFKLRFAPTSNSGGNTTVPNKTSGLMTSKNVMRSFSLQ**SSSWRNRCLALTLLMFGTRSL 816
Nucleotide Sequence (348 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
219.1 | 898.0 | 20% | 1.291e-56 | 62% | NC_001948 | |
121.5 | 176.2 | 40% | 3.015e-27 | 46% | NC_005343 | |
118.3 | 182.2 | 39% | 2.783e-26 | 48% | NC_011525 | |
119.2 | 219.0 | 34% | 1.475e-26 | 32% | NC_028975 | |
119.7 | 169.3 | 40% | 1.074e-26 | 44% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 458 to 760 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.1 bits(472) | 0.0 | 92/101(91%) | 0/101(0%) | Plus/Plus |
Query 14 FGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDGQL 316 +G EFVISSSDKS+ VVS+KGIGDS+TLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKI+ QL Subject 458 YGSEFVISSSDKSSQVVSRKGIGDSNTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQL 760
Range 2: 460 to 759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 88/100(88%) | 0/100(0%) | Minus/Minus |
Query 16 NWPSLILY**AQGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSESPIPFXXXXXXXXXXXLITNSKP 315 +W LILY *AQGLRLSGEPTSTSGGITAVAKS+LG ATSKKL+RSLIDQ**ISSCRKRF APVEITRGTNLRSV ESP+PFLLTT LDLSLELITNS P Subject 460 SWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPFLLTT*LDLSLELITNSDP 759
Range 3: 464 to 730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 57/89(64%) | 0/89(0%) | Minus/Minus |
Query 20 GPRIEAFRRANQHLWRNYCSCQEHTWLCNIQKINEIAD*PVMNLIMQEKIPSTCGNYARNQSPECVRITNTLLADNMVRLVTRAYHKFQ 286 GPR++ RANQH WR+YCSCQEH WL N+QKI++I +*PV+NLIMQ+KIP TCGNY +QSPECVRITN L DN+ VTR Y++ + Subject 464 GPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQSPECVRITNALSTDNLT*FVTRTYNELR 730
Range 4: 477 to 767 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 60/97(62%) | 0/97(0%) | Plus/Plus |
Query 33 *ALVTSLTMLSARRVLVILTHSGDWFRA*FPQVLGIFSCMMRFITGQSAISLIFWMLQSQVCSWQLQ*FLQRCWLALLKASILGPINIRSVMASYKS 323 * LVT+ LS R LVILTHSGDW *FPQV GIF CMMRF TGQ I IFW L SQ CSWQLQ* LQ+CWLAL + LGP +I+S+ + S Subject 477 *VLVTNQVRLSVERALVILTHSGDWSHV*FPQVPGIFFCMMRFTTGQLVI*SIFWTLPSQACSWQLQ*SLQKCWLALQRVLTLGPTSIKSMATNCSS 767
Range 5: 457 to 756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 63/100(63%) | 0/100(0%) | Plus/Plus |
Query 13 VWFGICDKL**QV*PCCQQEGYW*F*HTPEIGSARNFHRCSESFPA**DSLLVNQRSH*FFGCCKAKYALGNCSNSSRGAGWLS*KPQSLGLSI*DQ*WP 312 VW + K **Q+ CQ +G+W*F*HTPEIG NFHRC ESF A**DSLLVN S FFG C+AK+ALGNCSN SR AGWLS + LGL +*+Q P Subject 457 VWV*VRYKF**QIKSGCQ*KGHW*F*HTPEIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHALGNCSNPSRSAGWLSRES*PLGLPV*NQWQP 756
Range 6: 453 to 665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 44/71(62%) | 0/71(0%) | Minus/Minus |
Query 9 RAYLALQHPKN**DR*LTSNESHHAGKDSEHLWKLRAEPISGVCQNHQYPSC*QHG*TCH*SLSQIPNQTH 221 RA LA Q PKN* D *LTS+ESHHA KDS HLWKL PISGVC NHQ P *Q CH*+L + T+ Subject 453 RACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPISGVC*NHQCPFY*QPDLICH*NL*RTQTHTY 665
Range 1: 457 to 759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.5 bits(259) | 0.0 | 52/101(51%) | 0/101(0%) | Plus/Plus |
Query 14 FGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDGQL 316 +G EF S +S +++K G S+TL LVP +IS AR LF+HDE+HYWS +DL FL V KP M+LAT V PPE+L GS SLNPW Y++ I +L Subject 457 YGSEFTCVRSKQSGGLLAKHGGFSSETLSTLVPSLISVKARKLFIHDELHYWSKNDLRCFLQVVKPEMVLATLVYPPELLAGSKISLNPWCYEFDIYKDRL 759
Range 2: 531 to 725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 30/65(46%) | 0/65(0%) | Minus/Minus |
Query 88 QGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVS 282 QG EP +SGG T+VA +I GF T +K RS DQ* SSC F A I GT + VS Subject 531 QGFNDIFEPARSSGGYTSVANTISGFTTCRKHRRSFFDQ*CNSSCINSFLAFTLIKLGTRVERVS 725
Range 1: 471 to 773 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.3 bits(252) | 0.0 | 48/101(48%) | 0/101(0%) | Plus/Plus |
Query 14 FGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDGQL 316 +G FV+ SS + +KG D LR LVP ++ A+NLFLHDE+HYW+ DLI FL+V KP LL T V PPE+L G+ +SLN W Y Y++ +L Subject 471 YGSNFVVRSSASYPELCRRKGELDGAVLRELVPELMIKSAKNLFLHDELHYWTHRDLITFLEVLKPDKLLGTLVYPPELLKGAKKSLNSWCYTYRVDKDKL 773
Range 2: 530 to 754 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 36/75(48%) | 0/75(0%) | Minus/Minus |
Query 73 LY**AQGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSESPIP 297 LY * Q +L P S SGG T V S+ GF+TSKK++RS Q** SSC+ RF A + I GTN + + S P Subject 530 LYV*HQEFKLFFAPFSNSGG*TKVPNSLSGFSTSKKVIRSRWVQ**SSSCKNRFLALLIINSGTNSLNTAPSSSP 754
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 452 to 742 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.2 bits(254) | 0.0 | 48/97(49%) | 0/97(0%) | Plus/Plus |
Query 8 YVFGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYK 298 Y +G +F SS + N++ S++ + TLR LVP V + RN FLHDE+HYWS DL+ FLD P LLAT V PPE+L G+ ESLNPW Y ++ Subject 452 YRYGSDFTTLSSKQINNLCSRQSLEQCGTLRELVPLVKMSKKRNFFLHDELHYWSPHDLMLFLDSTTPDHLLATVVFPPEILAGAKESLNPWCYSFQ 742
Range 2: 535 to 723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 30/63(48%) | 0/63(0%) | Minus/Minus |
Query 91 GLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSV 279 G +LS P S SGG T VA+ G S+K +RS Q* SSCRK+F + T+GTN SV Subject 535 GFKLSLAPASISGGKTTVARR*SGVVESRKSIRSCGLQ*CSSSCRKKFLFLLIFTKGTNSLSV 723
Range 3: 491 to 727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 25/79(32%) | 0/79(0%) | Minus/Minus |
Query 47 PRIEAFRRANQHLWRNYCSCQEHTWLCNIQKINEIAD*PVMNLIMQEKIPSTCGNYARNQSPECVRITNTLLADNMVRL 283 P I A +++LW +E C I+K ++I P++ L+MQE++P Y R+Q P C + TL +V L Subject 491 PWI*ALLSPSEYLWWENNGSKEMIRCC*IKKKHKIMWAPIVQLVMQEEVPFFAHLY*RHQLP*CATLLKTLSGTEIVYL 727
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 452 to 739 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 47/96(49%) | 0/96(0%) | Plus/Plus |
Query 8 YVFGLEFVISSSDKSNHVVSKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQY 295 Y +G +F SS + +++ SKK + + TL+ LVP V + RN FLHDE+HYWS DL+ FLD P L+AT V PPE+L G+ ESLNPW Y + Subject 452 YRYGSDFTTLSSKQIDNLCSKKSLSECGTLKELVPLVKMSKKRNFFLHDELHYWSPQDLMLFLDSVNPDHLVATVVFPPEILAGAKESLNPWCYSF 739
Range 2: 526 to 723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 29/66(44%) | 0/66(0%) | Minus/Minus |
Query 82 GLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSES 279 G RLS P + SGG T VA G SK +RS Q** SSC+K+F + +T GT+ +V S Subject 526 GFRLSLAPANISGGKTTVATK*SGLTESKNSIRSCGLQ**SSSCKKKFLFLLILTSGTSSFNVPHS 723
Nucleotide Sequence (739 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
502.8 | 1561.4 | 32% | 1.447e-141 | 40% | NC_001948 | |
138.5 | 417.4 | 53% | 3.206e-54 | 38% | NC_009892 | |
119.3 | 311.4 | 37% | 1.174e-45 | 37% | NC_018714 | |
88.1 | 302.3 | 23% | 1.082e-47 | 38% | NC_030926 | |
91.8 | 221.8 | 27% | 2.196e-45 | 32% | NC_018175 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6374 to 7111 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
502.8 bits(1091) | 0.0 | 208/246(85%) | 0/246(0%) | Minus/Plus |
Query 2 CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHDVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQNISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKL 739 CIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+FIAFTAGVPD+PNL+GRYIKPYSPGCAV GK+NILDEYLSV DFS FDVLFSDPYQNIS+P+ A F+KSK+CRFG N C +L SFGF V SD D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKL Subject 6374 CIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKL 7111
Range 2: 6685 to 7110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 96/142(68%) | 0/142(0%) | Plus/Minus |
Query 3 SLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSNLSLCTSKPKDRRN*HPLLPNLQDFDFMKRATLGTLIF*YGSENSTSKSEKSFTDRYSSSMFIFPFTAQPGEYGLMYLPERFGVSGTPAVKAMKLSSSVMSSLIK 428 +L SELCA A+STASLPK ISTPSTS+ G+P +T S SL T KPK+ R PNLQ FD MK A+LG L+F YGSENSTSK EKS+TD+YSSS+ FP TA PGE GLMYLP R G+SGTPAVKAMK SSS +SSLIK Subject 6685 NLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 7110
Range 3: 6376 to 6603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 59/76(78%) | 0/76(0%) | Plus/Minus |
Query 510 DKALTKLFIIITSCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSM 737 D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS A*+TSIA*LS+ Subject 6376 DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSI 6603
Range 4: 6377 to 7108 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.3 bits(540) | 0.0 | 120/244(49%) | 0/244(0%) | Plus/Minus |
Query 5 FEI*IMRSSQINCLLAKAN*HTLNIQLKWRTCNHFIKPVTMHIKTKG*KELTSIITKPARL*LHEESHPWNTDILIWVRE*HVKIRKVIHRQILIKYVYLPFYSAARRVWLDVPPREIWSVGNAGRKSYETLVFSDELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHIMPNT*GLIYSFKQPRN*APHLVLISNQEPHTIVVCFNFLFIHHLN*QLAQPVGIGHLNCIIIN 736 FE ++R+S+I+CLL KA *H NI K R N F++ VT ++KT+G K SI KP *L E N D+L+WVRE H+K K++ Q+LIKY+ P++ R+ L+VP EI +V N +SYE L+ + L Y TTFTTTR+ MN+ WK +H NT+KLK Q FN*+IHN IMPNT*GLI SFK N*A HL+L+ +QE +TI++ +F HH N L+Q V IG L II+N Subject 6377 FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVN 7108
Range 5: 6378 to 6941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 97/188(52%) | 0/188(0%) | Plus/Minus |
Query 172 QTCKTLTS*REPPLEH*YFDMGQRIARQNQKSHSQTDTHQVCLSSLLQRSQESMA*CTSQRDLECRERRP*KL*NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*PGTAHNCSVLQLPLHSSSQLTTRPACRHRTPQLHNYQ 735 QT K LT * P E * F MG R A QN K+ +T THQV SL + E+ A*CT D C E *KL*NS + A L NYFYHYQ YE LEI*A KH QTQ T L*L+YS* S++AK+LRPN *LQ KLS SS A *P HN + L SS Q P HR P HN Q Subject 6378 QTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQ 6941
Range 6: 7035 to 7091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 12/19(63%) | 0/19(0%) | Plus/Minus |
Query 22 AQQPNQLPPCQSKLAHPQH 78 AQQ + LPP QS LA QH Subject 7035 AQQRDPLPPYQSILAPLQH 7091
Range 7: 6385 to 6624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 41/80(51%) | 0/80(0%) | Minus/Plus |
Query 489 LCN*GVLCLQAGRVVN*DDE*RGS*STLQLCAVPG*K*AQDEVLNFWVV*SYRLGLKCLA*CDYYE*LS*SFVYV*VCGC 728 LC+ G+LC+ GR +*+D+ S L LC + G + A DE+LNF +*SY LGLK LA +YYE* S*S V +*VC C Subject 6385 LCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRC 6624
Range 8: 6676 to 6981 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 46/102(45%) | 0/102(0%) | Minus/Plus |
Query 132 *K*FDKRAHH*RREFHSFYGRRSRHSKSLWEVHQAILSWLRCKREDKHT**VSVCE*LF*F*RAIL*PISKYQCSKGGSLHEVKVLQVW**WMLVPSILWF* 437 *K*F+K A+ EFHSF+ R SR S +VH A+ S + RE +T**V V F F* A+L PI K+Q S G+ H+VK L VW ++ + +L F* Subject 6676 *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF* 6981
Range 9: 7036 to 7092 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/19(63%) | 0/19(0%) | Minus/Plus |
Query 21 C*GCANLLWQGGS*FGCCA 77 C* AN+LW GGS CCA Subject 7036 C*RGANMLW*GGSGSRCCA 7092
Range 10: 6708 to 7055 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 46/116(40%) | 0/116(0%) | Minus/Plus |
Query 58 KTRVS*LLRPAFPTLQISLGGTSSHTLLAAL*KGR*TYLMSICL*MTFLILTCYSLTHIKISVFQGWLSS*SQSLAGLVIMDVSSFYPLVLMCIVTGLMK*LQVLHLSWMLRVC*F 405 + R+S*L + F T IS GT S L +G+ YLMS C F +L C S TH K S F S SQ L GL + + F P VL VT K L L ML+ C*+ Subject 6708 RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*Y 7055
Range 11: 6378 to 6572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 34/65(52%) | 0/65(0%) | Minus/Plus |
Query 541 LIIMQLRCPMPTGWASCQLR**MKRKLKHTTIVCGSWLEISTR*GAQFLGCLKL*IRP*VFGMM* 735 L IM+ R PM T W S L+** ++K + IV SW S R* AQF LKL IRP*VFG++* Subject 6378 LTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII* 6572
Range 1: 6482 to 7024 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 69/181(38%) | 0/181(0%) | Minus/Plus |
Query 2 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQNISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKL 544 V +M+ +V L + F + ++VH+VPGSGK++LIRE + + AF+ G PD PN+ GRYIK G G ILDEYLS + FD FSDP+QN A F+ S RFG N L S G+ V+S + DE+I + F ++EG +IC K D ++ +++L Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRL 7024
Range 2: 6272 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 34/56(61%) | 0/56(0%) | Minus/Plus |
Query 572 CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI 739 CIDNYAIEVSYAY +GE + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I Subject 6272 CIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 3: 6272 to 6430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 25/53(47%) | 0/53(0%) | Plus/Minus |
Query 581 KQPRN*APHLVLISNQEPHTIVVCFNFLFIHHLN*QLAQPVGIGHLNCIIINA 739 K+ RN V + N EPHT+VVC +F F L L V I +LNCII+NA Subject 6272 KEIRNRTF*KVGVLNNEPHTVVVCIHFFFTQVLGK*LPHGVSI*NLNCIIVNA 6430
Range 4: 6598 to 6801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 26/68(38%) | 0/68(0%) | Plus/Minus |
Query 225 F*YGSENSTSKSEKSFTDRYSSSMFIFPFTAQPGEYGLMYLPERFGVSGTPAVKAMKLSSSVMSSLIK 428 F* GSE S + +RYSSSM P P M P+ FG SG+P KA + +SLI+ Subject 6598 F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR 6801
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6673 to 7134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 60/154(39%) | 0/154(0%) | Minus/Plus |
Query 80 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQNISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFEL 541 +IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + F+ LFSDPYQN A F+ S RFGN L G+++ S + D V + F+L Subject 6673 LIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL 7134
Range 2: 6424 to 6582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 29/53(55%) | 0/53(0%) | Minus/Plus |
Query 581 CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 739 CIDNYAIEVS AY++GE ++ +EV+AHYNCVRF+V++ H ++ +I LF Subject 6424 CIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF 6582
Range 3: 7135 to 7215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 10/27(37%) | 0/27(0%) | Minus/Plus |
Query 2 LDVEGVLICFGKEAVDLAAAHNSDFKL 82 +D EGV+IC + D H+ ++KL Subject 7135 VDPEGVIICLEESVEDFLKWHSVEYKL 7215
Range 4: 6816 to 7109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 38/98(39%) | 0/98(0%) | Plus/Minus |
Query 105 TSSNLSLCTSKPKDRRN*HPLLPNLQDFDFMKRATLGTLIF*YGSENSTSKSEKSFTDRYSSSMFIFPFTAQPGEYGLMYLPERFGVSGTPAVKAMKL 398 T S L L P R+* LP + MK A + F*YGSE K + DRYSS + FP P LM +P F SGTP V A L Subject 6816 TMSCLLLAMLYPNP*RS*TV*LPKRCEHLPMKWALKQSP*F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML 7109
Range 1: 5796 to 5957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 31/54(57%) | 0/54(0%) | Minus/Plus |
Query 578 CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 739 CIDNYAIEV++AYR+GE ++ M+EEE++A YNCVR ++RNKH ++ S+ FE Subject 5796 CIDNYAIEVAFAYRMGERAVNRMDEEELDAFYNCVRLIIRNKHLLKSSVRDTFE 5957
Range 2: 6003 to 6311 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 41/103(40%) | 0/103(0%) | Minus/Plus |
Query 227 MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQ 535 M L+ L +F F V S LR P++VH VPG+GKSSLIR ++ + A+T G D PNL G YI+P++ + + I + LS LF DP Q Subject 6003 MELLLNKLESFGFTRVSSALRLPLIVHCVPGAGKSSLIRAILEDSVELRAYTFGQADQPNLIGNYIRPFTSDSILDQRTIIDEYTLSPQPIHGVLALFGDPRQ 6311
Range 3: 6333 to 6533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 26/67(39%) | 0/67(0%) | Minus/Plus |
Query 8 VALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF 208 VA F+ + S RFG N FL GF+VH++ D V F+ + GV++CF E L AHN ++ Subject 6333 VANFLGNFSRRFGANTAIFLRKLGFNVHAEGEDTVRVLDIFKAEPSGVIVCFEPEVQKLLCAHNLEY 6533
Range 4: 5798 to 5923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 26/42(62%) | 0/42(0%) | Plus/Minus |
Query 612 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSM 737 CLFL N TQL* AS+SSS + SP L*A TSIA*LS+ Subject 5798 CLFLIINLTQL*KASSSSSSMRFTALSPIL*AKATSIA*LSI 5923
Range 5: 6362 to 6529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 21/56(38%) | 0/56(0%) | Plus/Minus |
Query 12 SELCAAAKSTASLPKQISTPSTSNSNGEPVITSSNLSLCTSKPKDRRN*HPLLPNL 179 S L A + S KQ TP S N T S+ S CT P RR PNL Subject 6362 SRLWAQSNFCTSGSKQTITPDGSALNISSTRTVSSPSACTLNPNFRRKIAVFAPNL 6529
Range 1: 5949 to 6161 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 37/71(52%) | 0/71(0%) | Minus/Plus |
Query 329 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPY 541 ++M+ LV L+ + F ++S L P+VVH VPG+GK+SLIRELI D F+A+TAGV D P+LSGR+I+ + Subject 5949 LLMDVLVDLLNKYSFTRIHSKLSSPIVVHCVPGAGKTSLIRELIKLDSRFVAYTAGVEDEPHLSGRWIRKF 6161
Range 2: 5744 to 5908 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 31/55(56%) | 0/55(0%) | Minus/Plus |
Query 575 CIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA 739 CIDNYAIEV++AY+LGE ++ M+EEE+EA YNCVR +V+NKH R ++ +F + Subject 5744 CIDNYAIEVAFAYKLGERAVNRMDEEELEAFYNCVRIIVKNKHHCRSNVVEVFSS 5908
Range 3: 6267 to 6488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 24/74(32%) | 0/74(0%) | Minus/Plus |
Query 5 NISVPRVALFMKSKSCRFGNNGC*FLLSFGFDVHSDRFDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFK 226 N V R A + ++S RFG + FL GFDV ++ DEV + +++D ++ F +E L AH+ + K Subject 6267 NTKVVRSADYTCNRSKRFGRSTALFLRELGFDVVAEADDEVAVANIYQVDPVEQVVYFEQEVGCLLRAHHVECK 6488
Nucleotide Sequence (756 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
515.6 | 1565.4 | 25% | 2.058e-145 | 42% | NC_001948 | |
100.5 | 174.0 | 23% | 1.444e-36 | 41% | NC_003462 | |
101.4 | 245.3 | 25% | 1.977e-36 | 38% | NC_014821 | |
101.9 | 246.2 | 22% | 1.977e-36 | 39% | NC_018714 | |
90.4 | 253.5 | 21% | 3.709e-36 | 41% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2957 to 3685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
515.6 bits(1119) | 0.0 | 208/243(86%) | 0/243(0%) | Plus/Plus |
Query 27 GTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFNIKKIEDSSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS 755 G GLS+VL MPRSKKQSILVLEGALS+ETDYGPK+LGSFEVFKGDF+IKK+E+ SIFVI+Y+AP+RSTG+LRVH S CSFSGS+E+LL CQIEA AD++I+DFNTF VPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESE V P LS+P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS Subject 2957 GPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS 3685
Range 2: 3265 to 3684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 103/140(74%) | 0/140(0%) | Minus/Minus |
Query 335 LGLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHRIPHRGHSFSPNFQLTSYSGVIMISLT*CLTQNKXXXXXXXXXXSPSCFRIVGLERAGSTGDSLSTNDLIPAFKARPSVLRRKPTECQKQLPSPGTGKVL 754 LGLH+* +TSTSRLPSA+A+AVIMQP GA G K* D + RIPHRGHS SPNFQLTSYSGVI I LT C QN AIISFSA*AFS +C I G ER+G T SLST D IPAF+A PSVL +KPTECQKQLPSPGT KVL Subject 3265 LGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVL 3684
Range 3: 2956 to 3219 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 64/88(73%) | 0/88(0%) | Minus/Minus |
Query 26 NNSSLDPENEHADL*TLSLPVDLTGAL*DITNMELSSIFLMLKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGMARTCDRPVP 289 +N+SLDPENEH++L*TL+LPVDL GAL IT +E SSIFLM KSPLKTS DP+ FGP*SVS +RAPSRT+IDCFLL G+++T DRP P Subject 2956 SNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGP 3219
Range 4: 3227 to 3289 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 13/21(62%) | 0/21(0%) | Minus/Minus |
Query 297 ITRHRKSVEVFNFKVS*CLNL 359 ITRHR+SV++ N +S CLNL Subject 3227 ITRHRESVKIINIIISTCLNL 3289
Range 5: 2994 to 3470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 69/159(43%) | 0/159(0%) | Minus/Minus |
Query 64 RIRQSFHFLHKRFHQVASV*LGLKELDQLVIHFPQTILFLPSKLDHLC*EESQLSAKSSYHHQAQEKC*SLQFQSQLMPQFDSPITAPLTQKMSMQICELLACLWI*LEPCKISQIWSYLLSF*C*NPP*KLQMIPRFLDRSQFLKKGPLQEQGLTVSC 540 RI +S H HK + LGLK+LD H P+ I + P H C* ++Q +AKS+ HHQAQ KC*+ Q+ +Q MPQ S +KMS+ CE C WI*L PC + Q + S *C +P *KLQ P LD + FL G LQE L C Subject 2994 RIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQEPKLIAFC 3470
Range 6: 3531 to 3686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 26/52(50%) | 0/52(0%) | Minus/Minus |
Query 601 CWAYISN*ARLPHAFQVLMQ*L*SCSH*EGHKVENDWTLNTEFHIEAIHSPQ 756 CW Y N HAFQVL Q L*SC+H G V +D EFHI A H P+ Subject 3531 CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPR 3686
Range 7: 3359 to 3685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 47/109(43%) | 0/109(0%) | Minus/Minus |
Query 429 AGPT*VIEHVYLTPSKC*CNSCNHAAIKRGTRLKMIGL*TQNST*RPFILPKLPAHFIFWRYNDQSHMMPNTE*GNHFIFCISVFTKLLPYSWA*KSWINW*FTFHKRS 755 AG T +I H+ TPSKC* N C+HA I+ G L++I +NST* P P+ P +FIFW + + +++PN E* +H I IS+ +L W *K W T H+RS Subject 3359 AGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERS 3685
Range 8: 2972 to 3196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 37/75(49%) | 0/75(0%) | Minus/Minus |
Query 42 K*ACRFVNS*LACGSDWSPVRYHKYGAIFYLFNVKIPLKNFK*SQDFWTVVSF*RKGPFKNKD*LFLASWHGQNL 266 K*A VN A GS+W VRY+K +L NVK+P +NFK QDFWT++ F G FKN++*L A H NL Subject 2972 K*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFYG*GTFKNQN*LLFAPRHF*NL 3196
Range 9: 3439 to 3684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 39/82(48%) | 0/82(0%) | Plus/Plus |
Query 509 LCRK*NDCLILC*ASCETDHYNARI*SELEVWGE*MASMWNSVFKVQSFSTLCPS*WLHDYSYCISTWKA*GRRAQLLM*AQ 754 LCR+*+D +IL A + + RI*S LE+ G *+A MWNS+ ++S T+ P+ WLHD+S+C STWKA* +L +* Q Subject 3439 LCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQ 3684
Range 10: 2983 to 3282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 43/100(43%) | 0/100(0%) | Plus/Plus |
Query 53 HAKKQETVNPCS*RGPFFRN*LRSKNLGII*SF*GGF*H*KDRR*LHICDILQGSSQIHRQAKSSQICMLIFWVKGAVIGLSN*GIS*L*N*RLQHFSCA 352 +A +Q+ +N S*R P RN L SK+ G+ *SF G H*+D + C+ +QG + IH Q + SQ MLIF ++ + L +*G+ *L* * HF CA Subject 2983 NASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLCA 3282
Range 11: 2973 to 3197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 35/75(47%) | 0/75(0%) | Plus/Plus |
Query 43 KFWPCQEARNSQSLFLKGPFL*KLTTVQKSWDHLKFLRGILTLKR*KIAPYL*YLTGLQSDPQAS*EFTNLHAHF 267 +F C A+++Q FLK P+ *K VQKSW LKF +G TL+R + +L* T Q DP A * FT +AHF Subject 2973 RF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHF 3197
Range 12: 3285 to 3479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 27/65(42%) | 0/65(0%) | Plus/Plus |
Query 355 VMVTAFGTQLAFFLAQMV*L*RQE*DRLWKVNHQLIQLFQAQLYGSNLVKTLMQKMK*LPYSVLG 549 VM AFG L F+LA M *R D W+V+ +Q+FQ Q + +N + LM +M+* YS G Subject 3285 VMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFG 3479
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3459 to 3737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 42/93(45%) | 0/93(0%) | Plus/Plus |
Query 477 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS 755 P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AI+SAL RREVDVL L +P+ Subject 3459 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPA 3737
Range 2: 3228 to 3470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 33/81(41%) | 0/81(0%) | Plus/Plus |
Query 231 GKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALS 473 G+LR H+ C S E L C + S FE + F++F V DGNCFWHSVG L+ DG LK + + + P LS Subject 3228 GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLS 3470
Range 1: 3463 to 3741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 42/93(45%) | 0/93(0%) | Plus/Plus |
Query 477 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS 755 P + KQL N +AE E +A FC + ++L ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L +P+ Subject 3463 PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPA 3741
Range 2: 3232 to 3474 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 31/81(38%) | 0/81(0%) | Plus/Plus |
Query 231 GKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALS 473 G+LR H+ C S E L C + S FE + +++F V DGNCFWHSVG L+ DG +K + + + P LS Subject 3232 GELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLS 3474
Range 3: 3342 to 3419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 16/26(62%) | 0/26(0%) | Minus/Minus |
Query 341 FKARPSVLRRKPTECQKQLPSPGTGK 418 F PS R PTECQKQLPS T K Subject 3342 FMHSPSTPIRGPTECQKQLPSASTSK 3419
Range 4: 3570 to 3737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 21/56(38%) | 0/56(0%) | Minus/Minus |
Query 584 GLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHRIPHRGHSFSPNFQLTS 751 GL + TSTS A+A+A++ QP G QG K*L + ++ S N Q+ S Subject 3570 GLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS 3737
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3460 to 3738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 43/93(46%) | 0/93(0%) | Plus/Plus |
Query 477 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPS 755 P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L +P+ Subject 3460 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPA 3738
Range 2: 3229 to 3417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 30/63(48%) | 0/63(0%) | Plus/Plus |
Query 231 GKLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALK 419 G+LR H+ C S E L C + S FE + F++F V DGNCFWHSVG L+ DG LK Subject 3229 GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK 3417
Range 3: 3339 to 3416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 16/26(62%) | 0/26(0%) | Minus/Minus |
Query 341 FKARPSVLRRKPTECQKQLPSPGTGK 418 FK PS PTECQKQLPS T K Subject 3339 FKYSPSTPINGPTECQKQLPSASTSK 3416
Range 4: 3567 to 3734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 22/56(39%) | 0/56(0%) | Minus/Minus |
Query 584 GLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHRIPHRGHSFSPNFQLTS 751 GL TSTS SA+AIA++ PL G QG K L ++ + S N Q+ S Subject 3567 GLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS 3734
Range 1: 3326 to 3589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 36/88(41%) | 0/88(0%) | Plus/Plus |
Query 489 KQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRP 752 +Q+ + +AE E +A FC + ++L +++ V+W F + L + NHF PC P+NGC++ AIASALGRRE+DVL L +P Subject 3326 RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKP 3589
Range 2: 3086 to 3283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 31/66(47%) | 0/66(0%) | Plus/Plus |
Query 234 KLRVHKSACSFSGSRELLLDCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIR 431 +LR H C S E L C + S F ++F+ F VPGDGNCFWHSVG L+ DG+ LK +R Subject 3086 QLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLKGILR 3283
Nucleotide Sequence (303 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
214.6 | 605.6 | 20% | 2.267e-55 | 38% | NC_001948 | |
58.3 | 58.3 | 27% | 2.462e-08 | 30% | NC_018714 | |
55.1 | 55.1 | 27% | 2.274e-07 | 27% | NC_009892 | |
56.1 | 56.1 | 16% | 1.205e-07 | 45% | NC_028868 | |
52.8 | 52.8 | 16% | 1.113e-06 | 41% | NC_028975 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1193 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 86/100(86%) | 0/100(0%) | Minus/Plus |
Query 3 GSLLMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSISLIDITPDFFEHLFLFSCLNELIEDNVEEVMDNSWFGLSNAQFDRQRCPF 302 GSLLMPNI KLVISFFCRMMPNALARLSS+FRE SLDSFVY+LEPFNFS++L+DITPDFFEHLFLFSCLNELIE++VEEVMDNSWFGL + QF+RQR PF Subject 1193 GSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPF 1492
Range 2: 1192 to 1494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 67/101(66%) | 0/101(0%) | Plus/Minus |
Query 1 EKGHL*RSNCALLSPNHEXXXXXXXXXXXXXXRQENRKRCSKKSGVMSMRLIEKLKGSSAYTNESKEDSRKFDESLARAFGIILQKKEMTSFGIFGISREP 303 + G L R NC SPN ELS+TSST SSINS RQE R +CSKKSGV+S +L EKLKGSS YTNES E SRK +ESLA AFGII QK +MT+ + GIS+EP Subject 1192 KNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKEP 1494
Range 3: 1193 to 1492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 42/100(42%) | 0/100(0%) | Plus/Minus |
Query 3 EGTPLTIKLCIA*PKPRVVHNFLNIILDQFIETREQEKVLKEVRSNVYEAY*EVERFKCIHK*VQRGLTKI**KPSQSIWHHSTKERDDQLWNIWH*QGA 302 E PL I+L + KPR+VH+ N++LDQ I E++ +LKE+RS ++ +++ K +HK*+ R L+K +P + IWHH KE DQL N+ H Q A Subject 1193 ERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRA 1492
Range 4: 1201 to 1494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 37/98(38%) | 0/98(0%) | Minus/Plus |
Query 1 ANAKYSKAGHLFLL*NDAKCSG*AFIKFS*VLFGLICVCT*TFQLLNKPHRHYS*LL*APFPVLLSQ*IDRG*C*GSYGQLVVWAKQCTV*SSKVSLL 294 A A++ GH+ LL +DAKC+ A S V ICV T* + S* L*A +LL +*+DRG * +GQ +VW T+ S + +L Subject 1201 AYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVL 1494
Range 5: 1194 to 1319 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 20/42(48%) | 0/42(0%) | Minus/Plus |
Query 176 APC*CQIFQSWSSLSFVE*CQMLWLGFHQIFVSPLWTHLCMH 301 A C C F SWS SF *CQM G F S HLC H Subject 1194 ALCLCPTFLSWSYHSFAG*CQMHSPGSLLAFESVR*IHLCTH 1319
Range 6: 1359 to 1451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 16/31(52%) | 0/31(0%) | Plus/Minus |
Query 44 QTTSCP*LPQHYPRSIH*DKRTGKGAQRSQE 136 QT +CP* Q PRS H +R AQR+QE Subject 1359 QTKNCP*PLQRPPRSTHLGRRREINAQRNQE 1451
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 1204 to 1449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 25/82(30%) | 0/82(0%) | Minus/Plus |
Query 48 LMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSISLIDITPDFFEHLFLFSCLNELIEDNVEEVMDNSW 293 ++P++ ++V FF ++ PN ++R ++ LD+F+ LE FNFSI+ D++ ++ + L + I+ NVEE ++W Subject 1204 MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW 1449
Range 1: 1208 to 1453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 22/82(27%) | 0/82(0%) | Minus/Plus |
Query 48 LMPNIPKLVISFFCRMMPNALARLSSNFRESSLDSFVYALEPFNFSISLIDITPDFFEHLFLFSCLNELIEDNVEEVMDNSW 293 L+PN+ KL+ +FF + P+++AR F++ SLD+F+ +E FNFS+ I+ + + + ++ +++ + W Subject 1208 LLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW 1453
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Asian prunus virus 3 isolate Nanjing, complete genome
Nucleotide Sequence (408 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
291.1 | 1335.4 | 28% | 3.433e-78 | 63% | NC_001948 | |
135.8 | 230.3 | 26% | 1.975e-31 | 46% | NC_009892 | |
135.3 | 213.8 | 27% | 2.713e-31 | 47% | NC_025388 | |
133.9 | 212.9 | 27% | 7.034e-31 | 47% | NC_028975 | |
130.3 | 188.2 | 19% | 8.927e-30 | 47% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 8182 to 8556 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.1 bits(629) | 0.0 | 121/125(97%) | 0/125(0%) | Plus/Plus |
Query 12 GIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALINNPFANVTHE*G* 386 GIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGG+KRAPTKAEMVANIASFEV+VLRQ MAEGKRSSNLGEISGGTAGALINNPF+NVTHE*G* Subject 8182 GIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQVLRQAMAEGKRSSNLGEISGGTAGALINNPFSNVTHE*G* 8556
Range 2: 8181 to 8552 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 113/124(91%) | 0/124(0%) | Minus/Minus |
Query 11 PYSCVTFAKGLLISAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLIIP 382 P+SCVTF KGLL+SAPAVPPLISPRLELR PSAI CLST TSKEAILATISAFVGALL PP GSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVS+WMFHTIFA*YMQNLR+VVTSLIIP Subject 8181 PHSCVTFEKGLLMSAPAVPPLISPRLELRLPSAIACLST*TSKEAILATISAFVGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIP 8552
Range 3: 8185 to 8565 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.9 bits(478) | 0.0 | 88/127(69%) | 0/127(0%) | Minus/Minus |
Query 15 LPLSALFVRDVCKGVVDKRPSRSTTNFSKIGAPLSFSHSLSEHFDFKRGNISDHLCFCWSSLDTTLRFKRALICDSKEEVKGCKLFILIKSFLGPISWWYSRLQMDVPHNFRVVHAKSAQCGHLSYN 395 L S+ F+ ++ KGVVD+ SRSTTN SK+G PL+FSHSLSEH + KRG+IS+HL F WSS ++TL FKR LICDS+E++KGCKLFILIKSFLGP+SWWY RLQMDVPH+F +VHAKS CGHL YN Subject 8185 LTSSSSFMCNI*KGVVDECTSRSTTNLSKVGTPLAFSHSLSEHLNLKRGDISNHLSFRWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYN 8565
Range 4: 8180 to 8569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.8 bits(432) | 0.0 | 89/130(68%) | 0/130(0%) | Plus/Plus |
Query 10 LEL*ER*PHCADFACTTRKLCGTSIWRREYHQLIGPRKDLMRMKSLQPLTSSLESQMRARLNLRVVSRELQQKQRWSLILPLLKSKCSDRLWLKESGAPILEKLVVERLGRLSTTPLQTSRTNKADSGSN 399 L L* R*PH DFACT +K CGTSIWRR YHQL GPRKDLMRMKSLQPL S ESQMR RLN RV +ELQ+K RW LI PLL+ KCSD+LWLK SG P LE+LVVERL STTP Q N+ D S+ Subject 8180 LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQRKLRWLLISPLLRFKCSDKLWLKASGVPTLERLVVERLVHSSTTPFQMLHMNEDDEVSD 8569
Range 5: 8181 to 8573 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.4 bits(396) | 0.0 | 86/131(66%) | 0/131(0%) | Plus/Plus |
Query 11 WNYKRGDHTAQILHVLRENCVEHPFGDGNTTS*LGQERI**E*KVCSL*LLPWSHR*ERA*T*GWCQESSNKSRDGR*YCLF*SQSAQTDYG*RKAELQSWRN*WWNGWGAYQQPLCKRHARIRLIVEAML 403 W+YK GDH ILHVL +N VEHP GDG+TTS*LGQERI**E*KVCSL* SHR*E A*T GW +SSN+S DG *Y LF* SAQT YG*R+AE Q WR+*WWNGW +QQPL K + +R+ A + Subject 8181 WDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNES*DGC*YRLF*GSSAQTSYG*RQAEFQPWRD*WWNGWCTHQQPLFKCYT*MRMTKSATI 8573
Range 6: 8180 to 8365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 46/62(74%) | 0/62(0%) | Minus/Minus |
Query 10 VQARSHL*LQGRSQRLQTFHSH*ILSWPN*LVVFPSPNGCSTQFSRSTCKICAVWSPLL*FQ 195 VQA SHL*L ++QRLQTFHSH*ILSWP+*LVV PSP+GCST+F STCKI +WSP L* Q Subject 8180 VQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQ 8365
Range 7: 8408 to 8569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 34/54(63%) | 0/54(0%) | Minus/Minus |
Query 238 IASTISLIRA*RLQRGC**APQPFHH*FLQDWSSAFLQP*SV*AL*LQKRQY*R 399 +A + LI * L+RGC** QPFHH* LQ W+SA LQP* V*AL QKR+Y*+ Subject 8408 VADFVILIHV*HLKRGC**VHQPFHH*SLQGWNSACLQP*LV*ALEPQKRRY*Q 8569
Range 1: 8549 to 8854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 54/102(53%) | 0/102(0%) | Plus/Plus |
Query 33 TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 338 TLR+FC YYAK+VWN+ LET PPA W+ KG+ + K+AAFDFF GV +ALEP G+ R PT +E VAN E R +G +S+N+GEI+GG AG Subject 8549 TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAALEPVDGIIRKPTNSERVANETMKEAMSFRAAARDGTQSTNIGEITGGKAG 8854
Range 2: 8530 to 8853 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 50/108(46%) | 0/108(0%) | Minus/Minus |
Query 14 PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLII 337 PA+PP+ISP L L PS L + S AT+S VG L+ P GS A TP KKSKAA SL P L Q+AGG+ VS F TI A* QN R V ++++ Subject 8530 PALPPVISPMLVL*VPSLAAALKDIASFIVSFATLSELVGFLMIPSTGSRAAELSTP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLL 8853
Range 1: 8225 to 8548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 57/108(53%) | 0/108(0%) | Plus/Plus |
Query 15 IIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 338 +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +ALEP+ G+ R P E+VA A+ V + R A+ K +S E++GG AG Subject 8225 VIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRAEAAQDKNASTAHEVTGGRAG 8548
Range 2: 8227 to 8547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 50/107(47%) | 0/107(0%) | Minus/Minus |
Query 17 PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLI 337 PA+PP+ S +E A L +T A AT S+ G L +P GS A T KKSKAANF FSL PF GG+ V+ MF TI A* QNL SVV LI Subject 8227 PALPPVTSWAVEAFLSWAASALCKITPLLA*AATNSS**GFLTSPFSGSKAALFETCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLI 8547
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 8246 to 8569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 56/108(52%) | 0/108(0%) | Plus/Plus |
Query 15 IIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 338 +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +ALEP+ G+ R P E+VA A+ V + R A+ K +S E++GG AG Subject 8246 VIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAALEPENGLVRKPYHEELVAAQANKGVILHRTESAQDKNASTAHEVTGGRAG 8569
Range 2: 8248 to 8568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 50/107(47%) | 0/107(0%) | Minus/Minus |
Query 17 PAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLI 337 PA PP+ S +E A +T A AT S+ G L +P GS A T KKSKAANF FSL P GGI V+ MFHTI A* QNLRSVV L+ Subject 8248 PARPPVTSCAVEAFLS*ADSVRCRITPLLACAATNSS*YGFLTSPFSGSKAALLDTCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLM 8568
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 8186 to 8509 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 52/108(48%) | 0/108(0%) | Plus/Plus |
Query 15 IIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAG 338 +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF V++ +ALEP+ G+ R P E+VA+ + + + R A+ K S E++GG AG Subject 8186 VIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAALEPENGLVREPNHEELVASQVNKGISLHRTEAAQDKNVSTAHEVTGGRAG 8509
Range 2: 8188 to 8412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 35/75(47%) | 0/75(0%) | Minus/Minus |
Query 17 ATISAFVGALLTPPLGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSKWMFHTIFA*YMQNLRSVVTSLI 241 AT S+++G+ +P GSSA T KKS A NF F L PF GG+ V MF TIFA* Q VV LI Subject 8188 ATNSSWLGSRTSPFSGSSAALFETCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLI 8412
Nucleotide Sequence (332 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
189.4 | 691.0 | 28% | 1.04e-47 | 47% | NC_001948 | |
50.1 | 50.1 | 13% | 8.894e-06 | 45% | NC_025388 | |
51.5 | 51.5 | 12% | 3.43e-06 | 46% | NC_028975 | |
50.6 | 50.6 | 12% | 6.474e-06 | 46% | NC_005343 | |
56.5 | 56.5 | 12% | 1.042e-07 | 54% | NC_006550 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2561 to 2836 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 74/92(80%) | 0/92(0%) | Minus/Plus |
Query 33 GNNCSLVIRPGEFFEMPRGMQNNYFHGVSNCENGRVSMTFRRQKLEDEDQVFISPQVPIEQKHEKLDRNMWQLGLHGIKKSISINGTSFSSD 308 GN+CSL I P EFFEMPRGMQ NYFHGVSNC GRVS+TFRRQKLED+D +FI+PQVPIE HEKLDR+MWQ+GLHGIKKSIS+NGTSF+SD Subject 2561 GNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSD 2836
Range 2: 2560 to 2835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 71/92(77%) | 0/92(0%) | Plus/Minus |
Query 34 SEEKLVPFIEIDFLIP*RPSCHILRSSFSCFCSMGTCGLIKT*SSSSNFWRLKVMETLPFSQLETPWK*LFCIPLGISKNSPGLITRLQLFP 309 SE KLVPFIEIDFLIP*RP CHILRSSFS SMGTCG +K SSSSNFWRLKV +T P QLETPWK*L C+PLGISKNS G I RLQ P Subject 2560 SEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMKIKSSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LP 2835
Range 3: 2564 to 2830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 46/89(52%) | 0/89(0%) | Plus/Minus |
Query 39 GKACAIY*D*FFNSMKT*LPHIAIKLFMFLLNGNLWTNKDLILIFQLLASESHGNSPIFTIGNPMEVIILHTSGHLKEFTRPNHKTAII 305 GK AI+ + F NSMK LPH ++KLFM LNG+LW +D I+IFQLLA + P TIGNPMEVI LH H ++ PN + A+I Subject 2564 GKTRAIHRNRFLNSMKAHLPHTSVKLFMIELNGHLWIYEDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMI 2830
Range 4: 2565 to 2831 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 44/89(49%) | 0/89(0%) | Minus/Plus |
Query 38 IIAVL*LGLVNSLRCPEVCKIITSMGFPIVKMGEFP*LSDARSWKMRIKSLLVHKFPLSKNMKSLIAICGS*VFMELKNQSQ*MAQAFP 304 IIA LG ++ +C C ITSMGFPIV+ G + * A+SWKM I S +H+ PLS MKSL +CG FMEL+N *MA+ P Subject 2565 IIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMMI*SS*IHRCPLSSIMKSLTEVCGRWAFMELRNLFL*MARVLP 2831
Range 5: 2559 to 2819 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 43/87(49%) | 0/87(0%) | Plus/Minus |
Query 50 CHLLRLIF*FHEDLAATYCDQAFHVFAQWELVD**RLDPHLPTSGV*KSWKLSHFHNWKPHGSNYFAYLWASQRIHQA*SQDCNYSP 310 CH + I *FHE +ATY QAFH AQW VD *R + HLPT G *+S + +NWKPHGSN A A ++ H A CN P Subject 2559 CHS*K*IS*FHEGPSATYFGQAFHD*AQWAPVDL*RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYP 2819
Range 6: 2569 to 2832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 41/88(47%) | 0/88(0%) | Minus/Plus |
Query 37 LQSCD*AW*IL*DAQRYAK*LLPWGFQL*KWESFHDFQTPEVGR*GXXXXXXXXSH*AKT*KA*SQYVAARSSWN*KINLNKWHKLFL 300 LQ + A *+ +A +A LLPWGFQL D P+VGR* L+ ST +H*A++*KA* +YVA SWN*+I +WH+ +L Subject 2569 LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR**FDLHKSTGAH*AQS*KA*PKYVADGPSWN*EIYFYEWHEFYL 2832
Asian prunus virus 3 isolate Nanjing, complete genome
Nucleotide Sequence (325 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
245.8 | 653.7 | 52% | 1.089e-64 | 38% | NC_001948 | |
110.1 | 247.6 | 18% | 7.49e-27 | 32% | NC_008552 | |
106.9 | 238.4 | 32% | 1.918e-26 | 32% | NC_028111 | |
106.5 | 190.2 | 18% | 3.588e-26 | 52% | NC_029089 | |
113.8 | 192.4 | 24% | 2.135e-27 | 45% | NC_009991 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 872 to 1195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 98/108(91%) | 0/108(0%) | Minus/Plus |
Query 1 DVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSG 324 D++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSG Subject 872 DIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSG 1195
Range 2: 871 to 1194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 87/108(81%) | 0/108(0%) | Plus/Minus |
Query 2 PLLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSLMPMASKPEKHRMLDTRRLLIGVKLNK*WQNFE*RTS 325 PLLPQ ITSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRS MP+ASKPEKHRM + +RL IGVKL+K NFE* S Subject 871 PLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMS 1194
Range 3: 872 to 1195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 43/108(40%) | 0/108(0%) | Plus/Minus |
Query 1 ATSSTTYNK*SKVFNEFNLSSSRLVNKLTQFRLGRFFIRFFKSSQIEVYFSNDIMMHRKAAMHAAT*RLQILNAYGVKTRETPNVRYQKIINRCKAQQVMAEF*VKDI 324 AT T Y * K+ ++ L +L++ LGR I +SSQI++Y S +IMM+ +A +HAA *R +I AY ++ R+T +V QKI +R + +QV+ +F*V D+ Subject 872 ATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*VNDV 1195
Range 4: 880 to 1194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 40/105(38%) | 0/105(0%) | Minus/Plus |
Query 2 SLKILPSLVELYTD**SSGI*HSVFLWF*RHRH*GSGASKSRHA*LLSGAS*CRY*NIPLFENS*KT**RICRGEIASAY*QAYWKRD*IH*RLCFTCYKLWKKW 316 SLKI L + *S H++F W +RH S SK RHA LL S*C *+I LFENS + * +CRG+ ++ + + + + D ++ T KLW++W Subject 880 SLKI*SPLA*FHPYG*SFDFKHAMFFWLRCNRHKRS*TSKPRHAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEW 1194
Range 5: 879 to 1100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 34/74(46%) | 0/74(0%) | Plus/Minus |
Query 96 PRQILYQVF*EFSNRGIF**RHHDAPESSYACRDLEAPDP*CLWRQNQRNTEC*IPEDY*SV*SSTSDGRILSE 317 PRQ Y *EFSN+ I * +HHD S+ ACR LE D CL ++Q+N C +DY *+ S ILSE Subject 879 PRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE 1100
Range 1: 881 to 1171 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 49/97(51%) | 0/97(0%) | Minus/Plus |
Query 7 HLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGR 297 H L+ + + IR F FDA+ L+PL R + FP+ +V++KIY YLRTL+KPD +SA AKL QLI PTG EIKFIE+FA LVI G+ Subject 881 HHLTSITKGDAITEEIRTFGNFDAVSASHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLIVDPTGFEIKFIEEFAPLVIETGK 1171
Range 2: 857 to 901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 10/15(67%) | 0/15(0%) | Minus/Plus |
Query 280 DVLHSKFCHHLLSFT 324 D++HSKF HHL S T Subject 857 DLVHSKFSHHLTSIT 901
Range 3: 926 to 1156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 25/77(32%) | 0/77(0%) | Plus/Minus |
Query 22 NK*SKVFNEFNLSSSRLVNKLTQFRLGRFFIRFFKSSQIEVYFSNDIMMHRKAAMHAAT*RLQILNAYGVKTRETPN 252 N+ S+ N+FN +SR+ +LTQF G +R K S+I + F+N+I +R++ + T Q+ +K E+P+ Subject 926 NERSEFLNKFNFETSRVNYELTQFSYG*LNVRLLKGSEISINFANNINTNRESLTNVPTKWFQM*GRNSIKITESPD 1156
Range 4: 1000 to 1173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 31/58(53%) | 0/58(0%) | Plus/Minus |
Query 5 LLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK 178 +LP IT A SS+NLIS PVG ++S* N A AD SGF RVL+ IL+ T GK Subject 1000 ILPVSITRGANSSINLISKPVGSTMS*PNLAMAD*TSGF*RVLRYL*ILLITLILIGK 1173
Nerine latent virus isolate Marijiniup 4, complete genome
Range 1: 960 to 1217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 45/86(52%) | 0/86(0%) | Minus/Plus |
Query 7 LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGR 264 + ++R F FDA+ L+PL R + FP+ +V++KIY YLRTL+KPD +SA AKL QL+ PTG EIKFIE+FA LVI G+ Subject 960 ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGK 1217
Range 2: 903 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 10/15(67%) | 0/15(0%) | Minus/Plus |
Query 280 DVLHSKFCHHLLSFT 324 D++HSKF HHL+S T Subject 903 DLIHSKFSHHLISIT 947
Range 3: 1046 to 1219 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 32/58(55%) | 0/58(0%) | Plus/Minus |
Query 5 LLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK 178 +LP IT A SSMNLIS PVG + S* N A AD SGF RVL+ IL+ T GK Subject 1046 ILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGK 1219
Range 4: 969 to 1190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 24/74(32%) | 0/74(0%) | Plus/Minus |
Query 34 KVFNEFNLSSSRLVNKLTQFRLGRFFIRFFKSSQIEVYFSNDIMMHRKAAMHAAT*RLQILNAYGVKTRETPNV 255 K FNEF+L +S + LT GR IRF +SS++ + +N I + ++ + RL++ + Y VK ++ N+ Subject 969 KFFNEFDLKTSWIN*XLT*LGNGRLHIRFLESSKVPIDLTNYINTNGESLTDISPKRLKMPS*YCVKITKSSNI 1190
Elderberry carlavirus E isolate EBCVE, complete genome
Range 1: 959 to 1213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 45/85(53%) | 0/85(0%) | Minus/Plus |
Query 10 LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCG 264 + + R + FDA+ L +SR + +CFPV + V+KIY YLRTLKKPD +SA AKL QLI PTG EIKF+E+F+ LVI G Subject 959 ITNTYRSYGPFDAVSCTGLSMISRDVRNCFPVTFETVSKIYRYLRTLKKPDIQSAMAKLSQLIPDPTGPEIKFLEEFSKLVIKTG 1213
Range 2: 902 to 946 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 9/15(60%) | 0/15(0%) | Minus/Plus |
Query 280 DVLHSKFCHHLLSFT 324 D++HSKF HHL++ T Subject 902 DIIHSKFAHHLVAIT 946
Range 3: 1042 to 1215 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 30/58(52%) | 0/58(0%) | Plus/Minus |
Query 8 LPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQ 181 +P LIT+ SS NLIS PVG IS + A AD +SGF +V + IL T S TGKQ Subject 1042 VPVLITNLENSSKNLISGPVGSGISWLSLAMADWISGFFKVRRYL*ILDTVSKVTGKQ 1215
Range 1: 940 to 1179 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 47/80(59%) | 0/80(0%) | Minus/Plus |
Query 16 NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVIS 255 N+R F FDA + LEPL+ + CFPV +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS Subject 940 NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIIS 1179
Range 2: 874 to 918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 9/15(60%) | 0/15(0%) | Minus/Plus |
Query 280 DVLHSKFCHHLLSFT 324 DV+ SKF HHL++ T Subject 874 DVVQSKFAHHLIAIT 918
Range 3: 963 to 1169 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 31/69(45%) | 0/69(0%) | Plus/Minus |
Query 26 SEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSLMPMAS 232 ++AKS NLIS P G I+ + A AD SGF V + RY L TTS TGKQ + GS +AS Subject 963 NDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS 1169
Nucleotide Sequence (955 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
724.1 | 3121.5 | 28% | 0 | 64% | NC_001948 | |
196.3 | 483.1 | 32% | 9.402e-69 | 33% | NC_014821 | |
193.5 | 381.8 | 39% | 2.764e-66 | 36% | NC_003462 | |
195.3 | 424.6 | 32% | 2.764e-66 | 31% | NC_018714 | |
180.7 | 271.6 | 29% | 1.34e-65 | 39% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3065 to 4015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
724.1 bits(1574) | 0.0 | 297/317(94%) | 0/317(0%) | Minus/Plus |
Query 3 GSFEVFKGDFNIKKMEEGSIFVITYKAPVRSTGKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGSL 953 GSFEVFKGDF+IKKMEEGSIFVITYKAP+RSTG+LRVH +ECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLL TDGLALKAGIRSFVESE LVSP+LSAP I KQL EN YAENEMIALFCIRHHVR IVITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLC+PST HIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINP GKISALFDITNEHIRHVEKIG+GPQSIKVDELRKVKRSALDFLSMNGSKITYFP+FERAEKLQG L Subject 3065 GSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCL 4015
Range 2: 3064 to 4017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
594.4 bits(1291) | 0.0 | 283/318(89%) | 0/318(0%) | Plus/Minus |
Query 1 SKLPCNFSARSKFGK*VILDPFIDRKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPNCL*MVGAERFGLTRHSLSTKDLIPAFKARPSVPSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSVL*TLNLPVDLTGALYVITKMEPSSIFLMLKSPLNTSKDP 954 SK PCNFSARSK GK*VILDPFI+RKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSN AEILP GLITSISPF+SHLAQMSKASKASAKYI+LRPPP +SSK+* VLGLHR*F+TSTSRLP+AEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHS SPNFQLTSYSGVITI LTWC MQN AIISFSA* FS NCL + GAER GLT+ SLSTKD IPAF+A PSV SKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHS L*TLNLPVDL GALYVITK+EPSSIFLM KSPL TSKDP Subject 3064 SKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDP 4017
Range 3: 3068 to 4015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
496.8 bits(1078) | 0.0 | 218/316(69%) | 0/316(0%) | Plus/Minus |
Query 3 QTPLQFFSPLKVWEVGYLGPIH*QKIKSGSLDLPQLIHFYALRATSNLLNMPYVFISYVK*GRNLAIRVNHLNFTIYVTLGANVKSFKGFSQVHHIKAASLAQLLKNVIGAGLAQVIQHVNFTPPQC*SNGCDHATIQWGAWLEVI*FKTKNSXXXXXXXXXXXXDFIFWCDHYQPHMVPNAK*GNHLILGINILSQLFVNGWS*EVWTY*AFTFHKRSNTSL*GKTISAEQKTN*MPKTITITRHREGIEVINIIISTCFNLAA*QHLLGPGK*AFSFVNPQFAS*PNWSLICYHKNGAFLHFLDVEVPFEYLKR 950 QT LQ FSPLK WEVGY PIH*++I+ GSLDLPQ IHFYALRA + LNMPYV ISYVK RN R+NH N +IY+T ANVK K FS +HH+KA SL +LLKN+I AG Q+I H+NFTP +C*SNGCDHATIQWGAWLEVI*FK KNST*GPLT P+ PT+FIFWCDHY+P++VPNA+* +HLILGI+IL QLF N W *++WTY A T H+RSNT L*GK+ISA+ KTN MPK I ITRHRE +++INIIISTC NLAA*Q+L G GK*AF VNPQ AS NW L+ Y+KN FLH L+V+VPFE KR Subject 3068 QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKR 4015
Range 4: 3063 to 4016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
451.5 bits(979) | 0.0 | 218/318(69%) | 0/318(0%) | Minus/Plus |
Query 2 WDLLRYSKGTSTSRKWRKAPFL**HIRLQLGQLAN*GFTKLNAHFPGPRRCC*AARLKHVLIMILMTSIPSLCLVMVIVFGIQLVFCSALMVLP*RLVLDLLWKVNA**VQTSQLQPFTNNWERMFMPRMR*LPYFALGTM*G***SHQNMKSVGSLGRVSGPYVEFFVLNQITSNHAPH*MVA*SQPLLQHWGGVKLTC*ITCASPAPITFLRSCAKEAALI*CTWLKPLKLLTFAPSVT*MVKLR*LTLMARFLPYLT*LMNT*GMLRRLEVALRA*KWMSCGRSSDPLLIFCQ*MGPR*PTSQTLSGLKNCKGVC 955 W LL++SKGT T R+WRK FL** R QL LA *GFT NAHFP P+R C*AARL+HVLIMILM SLCLVM I FGI LVF ALM LP*R V DL W+V+A *VQ Q Q F NNW+RM MPRMR* Y A GT *G **SHQNMK VG+ G+VSGPYVEFF LNQITSNHAPH*MVA*SQPLLQH GVKL C*I C PA I FLRS +E AL *C LK L+ LTFA +V *M +L+*L + +FL LT*LM+T*GMLR+ +ALRA*KWM+CGRSSDP I Q*MG +*PTSQ LSGLK+CK VC Subject 3063 WGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC 4016
Range 5: 3123 to 4016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
441.9 bits(958) | 0.0 | 204/298(68%) | 0/298(0%) | Plus/Minus |
Query 2 ANSLAIFQPAQSLGSRLSWTHSLTENQERIA*PSATHPLLCSEGHFQSSQHALCVH*LCQIRQKSCH*G*SPQFHHLCHTWRKCQKLQRLQPSTSY*GRLLGTTPQKCDRCWACTGNSARQLHASPMLKQWL*SCNHSVGRMVGSDLI*DKEFHIGATHSPQTSN*LHILV*SLSASHGA*CKIRQSSHSRHKHSLPIVCEWLELRGLDLLGIHFPQKI*YQPLRQDHQCRAKNQLNAKNNYHHQAQRRY*SHQYHNQHMLQSGSLATPPWTRKMSIQFCEPSICQLT*LEPYMLSQK 895 AN LA FQPAQSLGSRL THSL N+ RIA*PSA HPLLCSEGH+ SQHALC H*LCQ QK H *S Q HL H RKCQ+ Q+LQ +TS *G L PQK D CW T N QLHA +LKQWL*SCNHSVGRMVGSDLI* KEFHIGATH P+ SN*LHILV*SL A GA C+I +SSHSRHKHSLPIV + L L+ LDL H P+KI Y+PL Q HQC KNQ NAK+N HHQAQR+ *+HQYHNQHM QSGSLA P W RKMSI CEPS CQ *L P L QK Subject 3123 ANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQK 4016
Range 6: 3421 to 4017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
302.6 bits(654) | 0.0 | 141/199(71%) | 0/199(0%) | Minus/Plus |
Query 1 TIGRECLCRE*DDCLILH*APCEADSDHTRI*SQLEVWGE*VAPMWNSLS*IKSLPTMRPTEWLHDHSHCFSIGEA*S*RAELPVQAQHLSHF*GVVPRRRP*YDVLG*SL*SF*HLRQV*HKW*N*GD*P*WQDFCLI*HN**THKAC*EDWKWPSEHKSG*VAEGQAIRS*FSVNEWVQDNLLPKL*AG*KIAREFA 597 TIGRECLCRE*DD +ILH AP +A SDHTRI*S LE+ G *VAPMWNSL *IKSLPTMRPTEWLHDHSHCFS +A*S* +L V QH S+F*G + R P*+DV *S * *HLR +*+KW +* D* W +FC++*HN** HKAC*E+ WPSEHKSG*+AEGQAIR F NEWV +NLLPKL*AG*K+AR FA Subject 3421 TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFA 4017
Range 7: 3064 to 3279 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 46/72(64%) | 0/72(0%) | Minus/Plus |
Query 739 GIF*GIQRGLQHQENGGRLHFCDNI*GSS*VNWQIEGSQN*MLIFRVQGGVARLPD*SMC*L*Y**LQYLLC 954 G+F* QRGL H E+GGR +FC+N+ G +*++WQ+EGSQ MLIFR+Q G+ARLPD* MC*L*Y** + LC Subject 3064 GVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLC 3279
Range 1: 3454 to 4071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 85/206(41%) | 0/206(0%) | Minus/Plus |
Query 3 LSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGSL 620 + P + KQL NV+AE E +A FC + ++L V+ E +W F E L + NHF+PC P+NGC+I AIASAL RREVDVL L KP+ +F+E+ +G G ++ L+ FE F IC D GE+ ++N G+I A F + EH+ H+ + S V +L +V SA+ FL+MNG++I Y P+ +RA L SL Subject 3454 VKCPRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSL 4071
Range 2: 3193 to 3474 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 34/94(36%) | 0/94(0%) | Minus/Plus |
Query 615 IFVITYKAPVRSTGKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLS 896 + + K + G+LR H+ EC S E L GC + ++ D +++F V DGNCFWHSVG L+G DG +K + + +C+ P LS Subject 3193 VVIAFLKPKMTQGGELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLS 3474
Range 3: 3474 to 3911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 55/146(38%) | 0/146(0%) | Plus/Minus |
Query 163 CSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPNCL 600 CS N A ILP L SP +S L Q+ K SK+ + IL+P P SS GL R TSTS AEAMA++ QPF+G G K* + ++ S N Q+ S T +L Q A S SA T +CL Subject 3474 CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHSSLA*STFNLIP*WEQK*ATASLSAQTLFSSCL 3911
Range 4: 3342 to 3419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 16/26(62%) | 0/26(0%) | Plus/Minus |
Query 670 FKARPSVPSKKPTECQKQLPSPGTEK 747 F PS P + PTECQKQLPS T K Subject 3342 FMHSPSTPIRGPTECQKQLPSASTSK 3419
Range 5: 3987 to 4073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 14/29(48%) | 0/29(0%) | Plus/Minus |
Query 1 SKLPCNFSARSKFGK*VILDPFIDRKSRA 87 SKL ARS G * I PFI R A Subject 3987 SKLSSKVEARSMDGL*SISAPFIARNLMA 4073
Range 6: 3634 to 3867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 26/78(33%) | 0/78(0%) | Plus/Minus |
Query 207 VNHLNFTIYVTLGANVKSFKGFSQVHHIKAASLAQLLKNVIGAGLAQVIQHVNFTPPQC*SNGCDHATIQWGAWLEVI 440 +NH FT + AN K+FK ++ +A S +K + A+ Q++N +P SNG + ATI A LE+I Subject 3634 INHD*FTSSIHTPANRKNFKEPGEIKDTEAPSFRNFIK*IFMCRFAKDCQNINLSPI*SRSNGPNDATIYRHARLEMI 3867
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3450 to 4064 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 83/205(40%) | 0/205(0%) | Minus/Plus |
Query 6 LSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGS 620 + P + KQL N +AE E +A FC + +RL V+ E +W F E L + NHF+PC P+NGC+I AI+SAL RREVDVL L KP+ +FEE+ +G G ++ L FE F IC D GE+ ++N NG+I A F + EH+ H+ + S V +L +V SA+ FL++NG+++ Y P+ +RA L S Subject 3450 VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDS 4064
Range 2: 3228 to 3470 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 34/81(42%) | 0/81(0%) | Minus/Plus |
Query 615 GKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLS 857 G+LR H+ EC S E L GC + ++ D F++F V DGNCFWHSVG L+G DG LK + + + + P LS Subject 3228 GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLS 3470
Range 3: 3458 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 54/150(36%) | 0/150(0%) | Plus/Minus |
Query 163 CSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPNCL*MVG 612 CS N A ILP L SP +S L Q+ K S + +L+P P SSK GL TSTS +AE +A+I PF+G G K* + + S N Q+ S T SL Q A S SA F NCL +G Subject 3458 CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*LS*QINVAAFNTS*GLNIQVHSSLV*STFSLIP*WEQK*ATASLSAQVFPSNCLLNLG 3907
Range 4: 3251 to 3415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 24/55(44%) | 0/55(0%) | Plus/Minus |
Query 670 FKARPSVPSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHS 834 FK PS P PTECQKQ PS T K K S S P + S+ +N HS Subject 3251 FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHS 3415
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3451 to 4065 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 85/205(41%) | 0/205(0%) | Minus/Plus |
Query 6 LSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGS 620 + P + KQL N +AE E +A FC + +RL V+ E +W F E L + NHF+PC P+NGC+I AIASAL RREVDVL L KP+ +FEE+ +G G ++ L FE F IC D GE+ ++N NG+I A F + EH+ H+ + S V +L +V SA+ FL++NG++I Y P+ +RA L S Subject 3451 VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDS 4065
Range 2: 3229 to 3471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 34/81(42%) | 0/81(0%) | Minus/Plus |
Query 615 GKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIRSFVESECLVSPNLS 857 G+LR H+ EC S E L GC + ++ D F++F V DGNCFWHSVG L+G DG LK + + + P LS Subject 3229 GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKKILHDQALKDGVKCPRLS 3471
Range 3: 3636 to 3917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 36/94(38%) | 0/94(0%) | Plus/Minus |
Query 154 CLMCSLVMSNKAEILPLGLITSISPFMSHLAQMXXXXXXXXXYIILRPPPWHNSSKM**VLGLHR*FSTSTSRLPNAEAMAVIMQPFSGAHGWK 435 C CS N A ILP L SP +S L Q+ S + + IL+P P SSK GL TSTS +AEA+A++ P +G G K Subject 3636 CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLK 3917
Range 4: 3228 to 3416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 26/63(41%) | 0/63(0%) | Plus/Minus |
Query 670 FKARPSVPSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSVL*TLNLP 858 FK PS P PTECQKQLPS T K K S S P + S+ ++ HS L+ P Subject 3228 FKYSPSTPINGPTECQKQLPSASTSKEWKRSGSNFLLNMTEHP*SFSVRSDSSHSSSWDLSSP 3416
Range 5: 3631 to 3909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 29/93(31%) | 0/93(0%) | Plus/Minus |
Query 162 VFISYVK*GRNLAIRVNHLNFTIYVTLGANVKSFKGFSQVHHIKAASLAQLLKNVIGAGLAQVIQHVNFTPPQC*SNGCDHATIQWGAWLEVI 440 VF K R+ +I +NH F+ V N + FK SQ+ + + ++L K V + LAQ ++N +C*SN I W A E++ Subject 3631 VFFLQRKFSRDPSILINHN*FSTCVHTATN*EYFKQPSQIENTETSTLCDFFKKVFMSRLAQHS*NINLPTTKC*SNRSYDTPINWHAGFEMV 3909
Range 1: 3326 to 3922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 78/199(39%) | 0/199(0%) | Minus/Plus |
Query 3 KQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCKPSTYHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPNGKISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDFLSMNGSKITYFPNFERAEKLQGSL 599 +Q+ + +AE E +A FC + ++L V++ V+W F ++ L + NHF PC P+NGC++ AIASALGRRE+DVL L KP ++E+ C G G + L FE F I A+ D G + +N +GKISA F + EH+ H++++ S + +L V +SAL L +NGS+I+Y P+ +RA+ L SL Subject 3326 RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSL 3922
Range 2: 3059 to 3283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 35/75(47%) | 0/75(0%) | Minus/Plus |
Query 657 YKAPVRSTGKLRVHKTECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLGTDGLALKAGIR 881 YK + +LR H EC S E L GC + ++ D+F+ F VPGDGNCFWHSVG L+G DG+ LK +R Subject 3059 YKPRLGKGMQLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLKGILR 3283
Nucleotide Sequence (523 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
278.3 | 1324.5 | 35% | 6.684e-84 | 53% | NC_001948 | |
183.0 | 387.3 | 30% | 1.682e-52 | 29% | NC_012038 | |
193.5 | 432.7 | 30% | 7.184e-54 | 30% | NC_009892 | |
195.8 | 442.2 | 30% | 1.083e-54 | 30% | NC_003462 | |
187.6 | 398.3 | 29% | 4.328e-52 | 31% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5189 to 5563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.3 bits(601) | 0.0 | 112/125(90%) | 0/125(0%) | Minus/Plus |
Query 3 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLVHE 377 WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ + HE Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHE 5563
Range 2: 5078 to 5140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 20/21(95%) | 0/21(0%) | Minus/Plus |
Query 426 VRAEKLCGDPWLKVMLFLGQD 488 VR EKLCGDPWLKVMLFLGQD Subject 5078 VREEKLCGDPWLKVMLFLGQD 5140
Range 3: 5188 to 5538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 91/117(78%) | 0/117(0%) | Plus/Minus |
Query 28 LAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLNH 378 LAF+G +RK S+KNFPYG ARL+ AAST GFENLRRF TAMRKV ES PLCLG MLSNLSHALL+CS P LCSSKNC V+S*P RTSR SF AI PTHLALVDS+LL GMWVLNH Subject 5188 LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH 5538
Range 4: 5083 to 5121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 8/13(62%) | 0/13(0%) | Plus/Minus |
Query 445 MTFSQGSPHSFSA 483 +TF+ GSPH+FS+ Subject 5083 ITFNHGSPHNFSS 5121
Range 5: 5078 to 5563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 91/162(56%) | 0/162(0%) | Plus/Minus |
Query 3 FMHQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRITTQLLRPH 488 FM I+ QWD E + *+FPIW P F SFNL LR+F+T DSHEEG+*II+FM W+ AFK TCIAQLL STP+ IKELL FITT+H + Q H ++PPGPG* Q+T DVGF+PF I A NF ILIL +EKH+ *P +TT LL P+ Subject 5078 FMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPN 5563
Range 6: 5082 to 5564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 93/161(58%) | 0/161(0%) | Minus/Plus |
Query 2 GRRSCVVILG*RSCFSLAKMRIAKLRNLKLSARMRNGSKPTSH*VTWNQPGPGGLERWR*RNIVKCDVVMKRPNSSLMNTGVEKASN*AMHVKDLKAYIQDIKVMIQ*PSSWLSGNVLNSRSLKLKLQN*GAQSHMGNFYWTPSFRRSH*MQATMQTWCMK 484 GRRS VV G*+ CFS KMRI KL+ +A+M+NG KPTS *V W+QPGPGG +W *++I +C VVMK N+SLM+ GVE SN*AMHV+ LKA+ Q IK MIQ*PSSWLS +V N RS +LKL N*G +HMGN Y S+ +SH* + + MK Subject 5082 GRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMK 5564
Range 7: 5067 to 5531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.6 bits(401) | 0.0 | 85/155(55%) | 0/155(0%) | Plus/Minus |
Query 35 SVGPSKGRCPVKISHMALRALILQLQLEASRI*DVS*QP*GRSLNHYLYVLDICFQIFHMHCSIARFFHTCVHQRTVGSFHNHIALHDVPSTPSFQPTWPWLIPSYLMGCGF*TIPHSSTQFQVPQLRNPHLGQGKA*PLAKDHHTASPPSQLQT 499 S+G G+ ++ISHM A + QLQ AS+I*D QP*GR LNH+LY L CFQ HMHCS+A FH HQR V SFHNH A D S P + PTWPWL P Y GCGF*TI H S QL NPHL GKA* L HH SPP L + Subject 5067 SMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHS 5531
Range 8: 5077 to 5532 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 80/152(53%) | 0/152(0%) | Minus/Plus |
Query 34 CEGGEAVW*SLAKGHAFPWPR*GLRS*GT*N*VLE*GMVQNPHPIK*LGINQGQVGWKDGVEGTS*SAMWL*NDPTVL**TQVWKKRAIEQCM*KI*KHISKT*R**FSDLPHGCQETS*ILEASS*SCKIKARKAIWEIFTGHLPFEGPTE 489 C GGE +W* + K +AFP R*GL S* +L+* MV NPHP++* G+NQGQVG +G+E S A+WL*ND T+L** W A EQCM*++*KH+ K *R *F++LPHGC + S I EA *SC+ +A + IWEI P + P E Subject 5077 C*GGEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIE 5532
Range 1: 4568 to 4924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 74/119(62%) | 0/119(0%) | Minus/Plus |
Query 21 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHN 377 WFKTH+PL +ES RA WV KE+REVR GY + QF DEH + + L+NA ERFE+IYPRHK +D+VTFLMAV+KRL+FSKP VE AKL A+ YGK+LLD FL VPL A HN Subject 4568 WFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHN 4924
Range 2: 4439 to 4519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 17/27(63%) | 0/27(0%) | Minus/Plus |
Query 426 LGVFGVVRAEKLCGDPWLKVMLFLGQD 506 LG VR +KL GDPWLK M+FLGQ+ Subject 4439 LGKDHCVREDKLAGDPWLKTMVFLGQE 4519
Range 3: 4567 to 4914 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 55/116(47%) | 0/116(0%) | Plus/Minus |
Query 31 AFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLNH 378 AF+GT +K+SS+ FP A + A ST G ENL+RF TA+RKVT SL LCLG M S S A ++ CSS N + *P RTS SF F T A S G VLNH Subject 4567 AFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH 4914
Range 4: 4466 to 4936 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 46/157(29%) | 0/157(0%) | Plus/Minus |
Query 9 HQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRITTQLL 479 H+ IV Q +E V+* + * + N R R+ H++ + I F+ W+ FK+ + I + + V I +L+ I +HF++F + +P F +T +V FEP+ + F F IL LAKE H PRIT++L+ Subject 4466 HEFRIVLGFQRHKFQEIVK*ILSVASSLI*LSALNHRFRKS*ALLHGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPWFSQYRFFNL*LFNILFLAKEHHCFQPRITSKLI 4936
Range 1: 5087 to 5455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 76/123(62%) | 0/123(0%) | Minus/Plus |
Query 9 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLV 377 WFKTHIP+ LE+ RARWV K+ KE RE R G+E T+QF DEH +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +PL H+++L+ Subject 5087 WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLM 5455
Range 2: 4976 to 5035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 14/20(70%) | 0/20(0%) | Minus/Plus |
Query 429 VRAEKLCGDPWLKVMLFLGQ 488 VR KL GDPWLK +FLGQ Subject 4976 VREPKLSGDPWLKTAIFLGQ 5035
Range 3: 5089 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 59/112(53%) | 0/112(0%) | Plus/Minus |
Query 40 GTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLN 375 G + RKV +N P G A LN A S G+E FLTA+R VTES+PLCLG ++S LS AL+ C LCSS NC V S*P S SF +I THLAL S+ GM VLN Subject 5089 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN 5424
Range 4: 4994 to 5461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 47/156(30%) | 0/156(0%) | Plus/Minus |
Query 3 FMHQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRITT 470 F H++ I+ + + EG+Q +F W +P*F +FN L E + F +SH E + M I +F F+C+ L A+ +F+ +LL +T + FL ++ +PP P + W+V FEP + FL + +L ++ P ITT Subject 4994 F*HEIAIMLTAKRYIL*EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT 5461
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5238 to 5612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 76/125(61%) | 0/125(0%) | Minus/Plus |
Query 3 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLVHE 377 WFKTHIP+ +LE+ RA+WV K+ +E RE R G TT+QF D+H + ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VPLN+SH+ ++ E Subject 5238 WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQE 5612
Range 2: 5127 to 5189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 14/21(67%) | 0/21(0%) | Minus/Plus |
Query 426 VRAEKLCGDPWLKVMLFLGQD 488 VR KL GDPWLK +FLGQ+ Subject 5127 VREAKLVGDPWLKTKIFLGQN 5189
Range 3: 5390 to 5611 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 40/74(54%) | 0/74(0%) | Plus/Minus |
Query 4 SCTRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLN 225 SC F+ L F GT RKVSS+N P G A +FA S G E L FLTA+R V S+PLCLGY+ S S AL+N Subject 5390 SCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN 5611
Range 4: 5240 to 5365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 21/42(50%) | 0/42(0%) | Plus/Minus |
Query 250 SSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLN 375 SS NC VV P R S S TH AL S+L+ GM VLN Subject 5240 SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN 5365
Range 5: 5149 to 5259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 11/37(30%) | 0/37(0%) | Plus/Minus |
Query 356 MGCGF*TIPHSSTQFQVPQLRNPHLGQGKA*PLAKDH 466 +GC *T P Q ++ QG++ L DH Subject 5149 LGCAS*TNPRPPQPHPRFQFQSQDFAQGRSWSLTMDH 5259
Range 6: 5148 to 5612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 46/155(30%) | 0/155(0%) | Plus/Minus |
Query 3 FMHQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRIT 467 F+H I+ IQ ++GV+ +F + FC R E ++ + H++ I M +Y+F + + I+ LL V I ELL +T + + + NP + WDV EP L R + NF + IL KE L*P IT Subject 5148 FLHHFFIMTAIQRHSFQKGVKQEFAERFGSSKFCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPILGRLNLIRDFNFKVRILPKEDLGL*PWIT 5612
Range 1: 5242 to 5610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.6 bits(403) | 0.0 | 72/123(59%) | 0/123(0%) | Minus/Plus |
Query 9 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGKSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLV 377 WFKTH+P+ LE+ RA+WV ++ KE RE R G TT+QF DEH + +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VPL+ H++ ++ Subject 5242 WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMM 5610
Range 2: 5131 to 5190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 14/20(70%) | 0/20(0%) | Minus/Plus |
Query 429 VRAEKLCGDPWLKVMLFLGQ 488 VR KL GDPWLK +FLGQ Subject 5131 VREAKLVGDPWLKTKIFLGQ 5190
Range 3: 5244 to 5597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 58/118(49%) | 0/118(0%) | Plus/Minus |
Query 22 LWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLFPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGMWVLN 375 L L GT +KVS +NFP G A LN A S G E L F TA++ V S+PLCLG M S LS AL++ S LCSS NC VV P R SR S + TH AL S + G VLN Subject 5244 LCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN 5597
Range 4: 5152 to 5610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 47/153(31%) | 0/153(0%) | Plus/Minus |
Query 9 HQVCIVACIQWDLRKEGVQ*KFPIWLCAP*FCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQLLAFSTPVFIKELLGRFITTSHFTMFLQRHLSNPPGPG*FQVT*WDVGFEPFLIRALSFKFLNFAILILAKEKHDL*PRIT 467 H + IQ D ++G++ KF P F F+ E F SH E I + MSW+ F F+C+ + VFI EL + S F++ L ++P P + W + EP L FK + F + LAKE L*P I+ Subject 5152 HHFTAMLAIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGIS 5610
Nucleotide Sequence (509 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
270.0 | 1381.2 | 12% | 1.048e-71 | 63% | NC_001948 | |
114.2 | 249.0 | 28% | 1.328e-31 | 44% | NC_009892 | |
112.0 | 333.6 | 16% | 2.664e-35 | 37% | NC_014821 | |
101.4 | 236.6 | 21% | 1.607e-31 | 38% | NC_025388 | |
102.8 | 230.6 | 24% | 2.991e-31 | 43% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7064 to 7492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.0 bits(583) | 0.0 | 112/143(78%) | 0/143(0%) | Minus/Plus |
Query 1 KEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHRNKLILMQ*NAFSAACQLGKDHNSIDCWFGHWACAALFEEVKFTIFWR*HPSISSRGALQGRHNKNNLLWP*TVLSQLRDIRAV*KLCALNA 429 KEAVDLA AH SEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHR KLI+MQ*+AFSAAC+LGK+HNSID W GHWACAA EEVK T+F HPSI SR ALQGR+ K NLLW +L QL DIR +*+ CALNA Subject 7064 KEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNA 7492
Range 2: 7064 to 7492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.0 bits(572) | 0.0 | 113/143(79%) | 0/143(0%) | Plus/Minus |
Query 1 SIKGTKFSDCPNIPELGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNGVMVFAQLAGC*KGILLHKD*FIPMSCSSNIKPVPVFRGWVS*F*KGYNVKG*TSNLTGQLEFGFVRSSKIHRLL 429 SIKGTKFSD PNIPELGKDC GPQ*VIL VPSL*RPP*GN*WMLSPE G+FDFL+KCSTSPMPKPTVNGVMVFAQ AGC*KGILLH F+P+SCSSN+KPVP+ GW+S*F K Y+VK *TSN T EF VR+S+IH LL Subject 7064 SIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLL 7492
Range 3: 7092 to 7490 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.7 bits(567) | 0.0 | 112/133(84%) | 0/133(0%) | Minus/Plus |
Query 3 TNPNSSCPVRFEVQPLTL*PF*NQETQPLKTGTGFILLLQDIGIN*SLCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIFGQSENFVPLM 401 T NS+ V+ EVQ LT * F*NQE QP + GTGF LLLQD G N* CSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGT ITYCGPKQSFPSSGIFGQSENFVPLM Subject 7092 TTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLM 7490
Range 4: 7063 to 7491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
242.5 bits(523) | 0.0 | 108/143(76%) | 0/143(0%) | Plus/Minus |
Query 2 ALRAQSFQTARISLSWERTV*GHSKLFLLCRPCNAPREEIDGCYLQNMVNLTSSKSAAQAQCPNQQSMELWSLPNWQAAEKAFYCIRINLFLCLVAAI*NQCLSSGVGSLDFKRVTTLKVEPRTSQGNLNSDLCAAARSTASL 430 ALRAQ+ Q RIS SW R HSKL+ L RPCNA RE IDGC N V+LTSS++AAQAQCP+Q SMELW LPN QAAEKA YC+ IN LCLVAA+*NQCLSSGVGSLDFKRVTTLKVEP TSQGNLNS+LCA ARSTASL Subject 7063 ALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASL 7491
Range 5: 7185 to 7490 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 73/102(72%) | 0/102(0%) | Plus/Minus |
Query 3 H*GHKVFRLPEYP*AGKGLFRATVSYSCCAVPVTPPVRKLMDVISRIW*I*LPQKVQHKPNAQTNSQWSYGLCPIGRLLKRHFTA*GLIYSYVL*QQYKTSA 308 H*GHK+ RL EYP AG+GL TVSY+ C VPVTP VR+LMDV+ I *I*LPQK+QHKPNAQ N QWSYG CPI RLLKRH TA* I VL*QQ KTSA Subject 7185 H*GHKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSA 7490
Range 6: 7078 to 7281 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 43/68(63%) | 0/68(0%) | Minus/Plus |
Query 212 SCCCAQIRIQVAL*GSRFNL*RCNPFKIKRPNP*RQALVLYCCYKT*E*INPYAVKCLFSSLPIGQRP 415 S CCAQ+ IQ+ L* RFN *R N F+IKR NP ALVL+CCYKT I+ +AV+CLFSSL IGQ+P Subject 7078 SRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP 7281
Range 7: 7318 to 7491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 38/58(66%) | 0/58(0%) | Minus/Plus |
Query 2 CCTF*GSQIYHILEITSINFLTGGVTGTAQQE*LTVALNSPFPAQGYSGSLKTLCP*C 175 CC F*GSQIY I TSIN LT GVTGT Q+ *LTV ++P PA GYS +L+ LCP*C Subject 7318 CCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGYSANLRILCP*C 7491
Range 1: 7163 to 7381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 39/73(53%) | 0/73(0%) | Minus/Plus |
Query 30 MPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIFG 248 MP QP +++K++ PL +GL +G+V+ L +S LP++GDNIH PHGG Y DGT +I YCGPK+SFP+ G+ G Subject 7163 MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG 7381
Range 2: 6962 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 17/36(47%) | 0/36(0%) | Minus/Plus |
Query 337 VCLVSKEAVDLAAAHKSEFKLPCEVRGSTFNVVTLL 444 V V K D + E++LPC+VRGSTF VVT + Subject 6962 VICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Range 3: 7162 to 7380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 32/73(44%) | 0/73(0%) | Plus/Minus |
Query 31 PNIPELGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNGVMVFAQLAGC*KGI 249 P P +GK GPQ*+I +VPS * PP G * MLSP G +K T P +P G F + GC +GI Subject 7162 PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI 7380
Range 1: 7347 to 7559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 40/71(56%) | 0/71(0%) | Minus/Plus |
Query 36 MPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGI 248 MPF QP +++K++ P+ +G + LVL L +S LP GDNIH PHGG Y+DGT RI+YCGPK SFPSS + Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSL 7559
Range 2: 7148 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 17/39(44%) | 0/39(0%) | Minus/Plus |
Query 328 VCLVSKEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSR 444 + + KE D A H E+KLPC+VRG+TF+ VT + + Subject 7148 IICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 3: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 9/15(60%) | 0/15(0%) | Minus/Plus |
Query 256 FYIAATRHRNKLILM 300 +Y+A TRHR+KL+L+ Subject 7292 WYVALTRHRHKLVLV 7336
Range 4: 7340 to 7549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 33/70(47%) | 0/70(0%) | Plus/Minus |
Query 46 LGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNGVMVFAQLAGC*KGILL 255 LGK+ LGPQ*+IL+VPS * PP*G MLSP GK +K T P G + G KGIL+ Subject 7340 LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILI 7549
Range 5: 7165 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 23/54(43%) | 0/54(0%) | Plus/Minus |
Query 266 NLFLCLVAAI*NQCLSSGVGSLDFKRVTTLKVEPRTSQGNLNSDLCAAARSTAS 427 NL LCLV+A ++ + +VT KV PRT QGNL S C A +S+ S Subject 7165 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTS 7326
Range 6: 7347 to 7550 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 25/68(37%) | 0/68(0%) | Plus/Minus |
Query 45 AGKGLFRATVSYSCCAVPVTPPVRKLMDVISRIW*I*LPQKVQHKPNAQTNSQWSYGLCPIGRLLKRH 248 A KG+FR V+ S +V + +R++++VI+ +W* Q ++ N+ T S W L I RL KRH Subject 7347 AWKGVFRTAVTDSLSSVLIVTTMRQIVNVITYLW*STPSQSE*NQSNSCTYSYWKNTLRVIRRLGKRH 7550
Range 1: 6875 to 7075 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 36/67(54%) | 0/67(0%) | Minus/Plus |
Query 33 PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIF 233 P + + + P+ VGLG+G+V+ L +S LP GDN+H PHGG Y DGT RI+YCGP+ SFPSS +F Subject 6875 PPDNTRVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLPHGGNYLDGTKRISYCGPRDSFPSSNLF 7075
Range 2: 6652 to 6756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 15/35(43%) | 0/35(0%) | Minus/Plus |
Query 325 KEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSRD 429 KE DL H +++K C++RGSTF++VT + S + Subject 6652 KEVFDLLDRHGADYKKDCQIRGSTFDIVTFITSSE 6756
Range 3: 6733 to 6828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 12/32(38%) | 0/32(0%) | Minus/Plus |
Query 256 VVTLLKSRDPTPEDRHWFYIAATRHRNKLILM 351 V + S PEDR+ Y+ TRHR+ L ++ Subject 6733 VTFITSSESFEPEDRYKVYLCLTRHRSVLRIL 6828
Range 4: 6901 to 7062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 31/54(57%) | 0/54(0%) | Plus/Minus |
Query 46 LGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNG 207 LGK LGPQ*+IL VPS * PP*G LSP G+ D +K T P PKPT G Subject 6901 LGKLSLGPQ*LILFVPSK*FPP*GRLCTLSPTEGRVDLVKHQMTMPTPKPTAMG 7062
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 6840 to 7040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 37/67(55%) | 0/67(0%) | Minus/Plus |
Query 33 PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTTRITYCGPKQSFPSSGIF 233 P + + + P+ +GLG+G+V+ L +S LP GDNIH PHGG Y DGT RI+YCGPK SFPSS +F Subject 6840 PPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISYCGPKNSFPSSNLF 7040
Range 2: 6617 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 15/35(43%) | 0/35(0%) | Minus/Plus |
Query 325 KEAVDLAAAHKSEFKLPCEVRGSTFNVVTLLKSRD 429 KE DL H +++K C++RGSTF++VT + + D Subject 6617 KEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD 6721
Range 3: 6731 to 6793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 10/21(48%) | 0/21(0%) | Minus/Plus |
Query 256 PEDRHWFYIAATRHRNKLILM 318 PEDR+ Y+ TRHR+ L ++ Subject 6731 PEDRYKVYLCLTRHRSILRIL 6793
Range 4: 6866 to 7027 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 27/54(50%) | 0/54(0%) | Plus/Minus |
Query 46 LGKDCLGPQ*VILVVPSL*RPP*GN*WMLSPEYGKFDFLKKCSTSPMPKPTVNG 207 LGK GPQ*+IL VPS * PP G W+LSP G D ++ T+P P+P G Subject 6866 LGKLFFGPQ*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIG 7027
Nucleotide Sequence (490 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
320.4 | 1171.9 | 14% | 6.628e-87 | 44% | NC_001948 | |
107.4 | 157.0 | 20% | 9.221e-23 | 39% | NC_006948 | |
102.3 | 174.1 | 22% | 1.218e-22 | 41% | NC_009892 | |
91.3 | 225.3 | 37% | 9.881e-24 | 36% | NC_009764 | |
60.6 | 265.8 | 26% | 4.405e-27 | 41% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6860 to 7342 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.4 bits(693) | 0.0 | 131/161(81%) | 0/161(0%) | Minus/Plus |
Query 7 DVLFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*DAFSATCELGQNCYSIDNRLGHWLGAAFPKKVK 489 DVLFSDPYQNIS+P+EAHFIKSKTCRFG NTCKYL SFGF V SD D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*DAFSA CELG+N SID+ LGHW AAF ++VK Subject 6860 DVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVK 7342
Range 2: 6859 to 7344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
256.3 bits(553) | 0.0 | 116/162(72%) | 0/162(0%) | Plus/Minus |
Query 5 NLTFLGNAAPSQCPSLLSME*QFWPNSQVAEKASHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPKDRRYLHVFLPNLQVFDFMK*ASLGTLIF*YGSENSTS 490 +LT NAA +QCPS LSME F PNSQ AEKAS+CM+INF LCLVAAM*NQCLSS VGSLDF +VTT V P TSQG+L SELCA A+STASLPK ISTPSTS+ G+P +T S SL T KPK+ RYL VF PNLQVFD MK ASLG L+F YGSENSTS Subject 6859 DLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTS 7344
Range 3: 6860 to 7348 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 93/163(57%) | 0/163(0%) | Plus/Minus |
Query 1 GKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRKFEI*IMRSCQINCLLAKAN*HTLNIQLKW*TCNHFIRPVTMHIKTKG*KVLTCIFAKPAGL*LYEVSLPWNTDILIWVRE*HV 489 G+FDFLRKCST PMPKP VNGV V AQFAGC*KGI LHD Q LP+SC SNV+PV I+ G IS*FQ ++K TS TR FE ++R+ +I+CLL KA *H NI K N F++ VT ++KT+G K+ I AKP *L E+ L N D+L+WVRE H+ Subject 6860 GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHI 7348
Range 4: 7104 to 7346 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 59/81(73%) | 0/81(0%) | Minus/Plus |
Query 3 SNFLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNL 245 SN+LV+ EV L +*NQEI+P I TG TLL QD GR+* SCS+MPFQQPANWAKT+TPLT+GLGIGLVLHFLRKSNL Subject 7104 SNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNL 7346
Range 5: 6864 to 7055 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 28/64(44%) | 0/64(0%) | Minus/Plus |
Query 294 CYSLTHIKISVFQGRLTS*SQRPAGLAKIHVSTFYPLVLMCIVTGLMK*LQVHHLSWMLRVC*F 485 C S TH K S F R S SQ+ GLA I + F P VL VT K L L ML+ C*+ Subject 6864 CCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*Y 7055
Range 6: 7036 to 7278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 46/81(57%) | 0/81(0%) | Minus/Plus |
Query 71 C*GCANLLWQGGS*FGSCA*FRFQTSL*GTRCYI*CCYLIEIKRSDL***ALVLHCCNKT*EEVDHHAVRCLFSNLRIGPK 313 C* AN+LW GGS CA Q +L* R * EIKRS+ *ALVLHCC KT E+D+HAVRCLFS+LRIG K Subject 7036 C*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQK 7278
Range 7: 6865 to 6981 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 18/39(46%) | 0/39(0%) | Minus/Plus |
Query 368 AIL*PISKYQCSKGGSLHKVKDLQVWQKYM*VPSILWF* 484 A+L PI K+Q S G+ H+VK+L VW++Y+ + +L F* Subject 6865 AVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF* 6981
Range 8: 7155 to 7343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 44/63(70%) | 0/63(0%) | Plus/Minus |
Query 6 I*LS*EMQHQANAQAYCQWSNSFGPIRRLLKRHLTA**STSSYVLLQQCRTSAYHQRSDLLIS 194 I*L +MQH+ NAQA CQWS F PIRRLLKRHLTA* S S VL QQC+TSAY DLLIS Subject 7155 I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7343
Range 1: 4296 to 4673 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 52/126(41%) | 0/126(0%) | Minus/Plus |
Query 112 DVLFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIM 489 DV+F+DP Q+ AH+ S T RFG+ TC+ L FG S++ DEV G F D EG +IC EA LA+ + + PCE GATF VVT++ D YIA TRH + L I+ Subject 4296 DVIFADPLQHRGPTLPAHYTSSITHRFGRATCELLSKFGITAESNKEDEVFFGWAFADDPEGAVICLDAEAQSLASWNGLEHLKPCEALGATFPVVTVISGTPLEEADAVDRYIALTRHTRLLRIL 4673
Range 2: 4430 to 4645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 28/72(39%) | 0/72(0%) | Plus/Minus |
Query 140 VAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDL 355 V+AM S+ + VTT NVAPR SQG S A+ AS +Q++ PS S++ P TSS L Subject 4430 VSAMYRSTASASSRGVPEMTVTTGNVAPRASQGFKCSRPFQEARDCASASRQMTAPSGSSAKAHPKKTSSSL 4645
Range 1: 6773 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 41/99(41%) | 0/99(0%) | Minus/Plus |
Query 193 DVLFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL 489 D FSDP+QN AHF+ + RFG+NT L S G+ V+S + DE+I + F ++EG +IC K D ++ +++LPC+VRG+TF+VVT + Subject 6773 DCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Range 2: 7109 to 7150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Plus |
Query 112 YIAATRHRKKLIIM 153 YIA TRH KK+ I+ Subject 7109 YIALTRHSKKIQIL 7150
Range 3: 6883 to 7065 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 26/61(43%) | 0/61(0%) | Plus/Minus |
Query 197 KVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPK 379 KVTTS V PRT QGSL S+ KS+ Q++ PS+S ++SS L+L T P+ Subject 6883 KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR 7065
Range 1: 6320 to 6610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 42/97(43%) | 0/97(0%) | Minus/Plus |
Query 193 LFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL 483 +F DP Q + FI +KT RFG NTC L FGF + SD+ DEV+ S +VEG ++ G EA + + +K CEVRG+TF+VVTL+ Subject 6320 IFGDPCQGTAPCIPPQFISTKTRRFGYNTCGLLQKFGFSIESDQEDEVVIQSSAVGEVEGEVLACGPEAELILTWYGYPYKKYCEVRGSTFEVVTLV 6610
Range 2: 6669 to 6803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 18/45(40%) | 0/45(0%) | Minus/Plus |
Query 3 DIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNL 137 DIG S* S + MP P + K++ + G G+ LVL+ L +S L Subject 6669 DIGAS*LSSTVMPLLPPPDNTKSILAIATGAGLALVLYTLTRSTL 6803
Range 3: 6355 to 6531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 21/59(36%) | 0/59(0%) | Plus/Minus |
Query 272 STASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPKDRRYLHVFLPNLQVFDFMK*ASL 448 ++AS P ++PSTS + + + TSS SL P HV PNL V M * + Subject 6355 NSASGPHASTSPSTSPTADDCITTSSS*SLSIENPNFWSNPHVL*PNLLVLVEMN*GGI 6531
Range 1: 7130 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 22/45(49%) | 0/45(0%) | Minus/Plus |
Query 184 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR 318 ++ EG +IC KE D A H+ ++KLPC+VRGATFD VT + + Subject 7130 VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 2: 6962 to 7129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 23/56(41%) | 0/56(0%) | Minus/Plus |
Query 316 LFSDPYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFEL 483 LFSDPYQN AHFI + RFG T + L + G+++ S + D V + F L Subject 6962 LFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL 7129
Range 3: 7347 to 7448 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 16/34(47%) | 0/34(0%) | Minus/Plus |
Query 3 MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNL 104 MPF QP +++K+V P+ IG + LVL L +S L Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTL 7448
Range 4: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 8/15(53%) | 0/15(0%) | Minus/Plus |
Query 112 FYIAATRHRKKLIIM 156 +Y+A TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 5: 7126 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 30/67(45%) | 0/67(0%) | Plus/Minus |
Query 122 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS 322 N LCLV+A ++ + KVT S VAPRT QG+L S C A KS+ S +QI PS S S Subject 7126 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS 7326
Nucleotide Sequence (783 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
580.2 | 1843.0 | 26% | 7.614e-165 | 41% | NC_001948 | |
234.8 | 315.2 | 20% | 7.697e-61 | 37% | NC_029087 | |
148.2 | 366.7 | 33% | 1.256e-60 | 43% | NC_018714 | |
151.8 | 390.8 | 13% | 2.346e-59 | 41% | NC_014821 | |
149.1 | 389.0 | 22% | 3.941e-58 | 39% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3872 to 4651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
580.2 bits(1260) | 0.0 | 239/260(92%) | 0/260(0%) | Minus/Plus |
Query 4 KIGNGPQSIKVDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMTAAFAD 783 KIGNGPQSIKVDELRKVKRSALD LS+NGSK TYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKVAKAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IR DAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRF+NPMF+SRLPC+FKKGSMTAAFAD Subject 3872 KIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFAD 4651
Range 2: 3874 to 4653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
464.3 bits(1007) | 0.0 | 209/260(80%) | 0/260(0%) | Plus/Minus |
Query 2 *SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPASEMKASRRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVRPPSKHP*SFSARSKLGKYVVFDPFRESRSRAERLTFRSSSTFIL*GPLPI 781 *SA AAV+EPFLK HG+L+SNIGF NL LS LYLY PS SL+MSLCSAPK+A SF ESYVL* GSPASEMKAS RI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA ATL SSISRSFLIE A+ARLGETKVTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPVRPPSKHP +FSARSKLGK V+ DPF E +SRA+RLTFR+SSTF+L*GPLPI Subject 3874 *SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPI 4653
Range 3: 4301 to 4654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 64/118(54%) | 0/118(0%) | Plus/Minus |
Query 1 LISKRGSHGTFFEVTW*S*IKHWIYEPPALQVVPI*LSFKKSQYVTLFSTQNGSIFLRIVCALTRITS**DESVTANNKET*INVTRGK*LNFIKDHAMTSL*ACNLSKENFEGNNIP 354 +IS+ GSH FEVTW S* +HW+++PPA V+PI + K+S+YVTL S QN I LR++CALT ITS *+ES+T NK+ *I+V+R K L+ IK+H + SL +CN SKEN + IP Subject 4301 IISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP 4654
Range 4: 3878 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 54/126(43%) | 0/126(0%) | Plus/Minus |
Query 400 IHFQVLLD*IG*SPPR*NKSHKFPFRSLHEALV*ETLSSPKCTKYNCQFSLFDVGS*HSSKPRL*IIKFLVTYHTS*TSQQAPLKFFGPLKTWKICCF*PVQGK*VKS*TFNFSQLIHLYTLRPVT 777 IHF+++ D*I *S NK ++F R HE LV ETL SPKCTK++ QF ++ S ++ KPR I + L+TY+ S* Q L+ F PLK W++ F P+ K ++ + + Q IH Y LR +T Subject 3878 IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAIT 4255
Range 5: 4320 to 4652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 62/111(56%) | 0/111(0%) | Minus/Plus |
Query 3 KFSLERLQA*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSH*LVILVKAHTILKKIEPFWVLNKVTY*DFLKESHIGTTWRAGGS*IQCLIQDYHVTSKKVP*LPRLLI 335 +FSLE+LQ *RL * LM+ S F L T IY LL+ V LS H LVI VKAH K+I FW L++VTY D L+ IG T +AGG * QC QD HVTSK+ *LP LI Subject 4320 RFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLI 4652
Range 6: 3889 to 4239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 49/117(42%) | 0/117(0%) | Minus/Plus |
Query 416 SKYKGG*AAKS*TFSS*PTFPERVKNNIFSKF*AGRKTSGVLAGRSNWCDK*REI**FKALACWSVNFRHQTKRIDSCTWYIWGWKEFPIQELHEEI*REICDFCFT*AGSSQFNQE 766 S++K G* A+ F E V NN+ K *AG K + + A NW K* E+ * K LA W + + + K ID WYIWGW+EF +QE HE++* I + CF+ S+FNQ+ Subject 3889 SEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK 4239
Range 7: 4306 to 4641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 51/112(46%) | 0/112(0%) | Minus/Plus |
Query 14 CCYLRSFP*KGYRPKGWSLRDL**SSAISPWLH*SMSPCYSP*RFHLTSW*SLSKHIRFSKR*SHFGC*TK*HIETS*RKVI*VQLGEPEVHKSNV*FKITM*LQKRFHDCR 349 C FP*K R +GW L D ** +S W+H SM Y+ * FH T W*S+SKHI +K +FG * +*H T+* + +*V + EV + NV K M LQK DCR Subject 4306 CSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCR 4641
Range 8: 3879 to 4175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 41/99(41%) | 0/99(0%) | Minus/Plus |
Query 480 VTGLKV*RWMSCEKLNVQLLTYFP*TGQKQHIFQVLSGPKNFRGACWEV*LV**VTRNLMIQSLGLLECQLPTSNKEN*QLYLVHLGLERVSYTRAS*R 776 V L+ *+WM+C + + F * G K Q LSG K+ + C *L *V R+ ++Q+LG L L ++ N* LVHLGL RVS TR S*+ Subject 3879 VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*K 4175
Range 9: 4323 to 4652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 50/110(45%) | 0/110(0%) | Plus/Minus |
Query 3 DQQTRQSWNLF*SYMVILNQTLDL*TSGSPSCTYMTFLQEVSICHFVQHPKWLYLFENRMCFDKDHQLVR*KRHGE*QGDIDQCNQGEIAELHQRSRNDQPLGL*PF*GK 332 +Q+ RQS + F*S M +L +TL TS TY Q V +CH Q PK F + MCFD DHQ V+*K H * ID+C Q E HQ+S + QP L F*GK Subject 4323 NQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GK 4652
Range 10: 3879 to 4160 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 41/94(44%) | 0/94(0%) | Plus/Minus |
Query 495 CIGNSFQPQMYQVQLSILFV*CRKLTLQQAKALNH*ISRHLSHQLDLPASTPEVFRPAQNLENMLFLTRSGKVGQELNV*LFAAHPPLYFEARY 776 C NS QPQMYQ + SI * + Q+AK L+H* S HL QL A+ F+PAQ+L + LF T S K + * A HP L E Y Subject 3879 CTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHY 4160
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3451 to 4173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 105/241(44%) | 0/241(0%) | Minus/Plus |
Query 22 LRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSM 744 L V +++LL G+ TY P RA +L L GG TG IS +ND V S R L V+LGTFGAGKS L+K FM ++G+ +T+VSPRR LA D+++D + K++ + W V TFE FL + ++ G VI DEVQL+PPGY+DL L ++ I L GDPCQS YDS+KDR E SDI ++LE K Y YN+ SRRF+N ++ RLPC + + Subject 3451 LTAVTEESVELLRGCGTLITYQPDQGRALRLAKNLHGGQTGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPCTLDESKL 4173
Range 2: 3840 to 4157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 43/106(41%) | 0/106(0%) | Plus/Minus |
Query 38 KLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPASEMKASRRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ 355 ++HG S + F RL L LY S L +SL S K+ LSF S L GSP+ +M R RS PGG S TSS IT P + R SKV T Q Subject 3840 RVHGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ 4157
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 4360 to 4689 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 58/110(53%) | 0/110(0%) | Minus/Plus |
Query 19 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMT 348 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L + I +AGDPCQS YDS DR I +SDI+R L G+SY++N+ S+RF NP+F RLPCN K +T Subject 4360 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLT 4689
Range 2: 3955 to 4299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 49/115(43%) | 0/115(0%) | Minus/Plus |
Query 409 VDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL 753 V +L +V SA+ L++NG++ Y PS +RA L G TGV+ K A + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3955 VSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4299
Range 3: 4404 to 4703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 45/100(45%) | 0/100(0%) | Plus/Minus |
Query 5 SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPASEMKASRRITRRHRSM*PGGNS*TSSKITQ*PA 304 S+++ V KL G+L IGF+NL L L L P R L MSL K+ S S L GSPA M R RSM*PGGNS* SS T *P+ Subject 4404 SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPAIIMFTFRFNPSMIRSM*PGGNS*ISSMTTV*PS 4703
Range 1: 4363 to 4692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 57/110(52%) | 0/110(0%) | Minus/Plus |
Query 19 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMT 348 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++++ I +AGDPCQS YDS DR I +SDI+R+L G++Y++N+ S+RF NP+F RLPCN K +T Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLT 4692
Range 2: 4153 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 409 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL 558 + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4153 VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 3: 3958 to 4095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 19/46(41%) | 0/46(0%) | Minus/Plus |
Query 616 VDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVI 753 V +L +V SA+ L++NG++ Y PS +RA L L G TGV+ Subject 3958 VSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL 4095
Range 4: 4161 to 4301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 23/47(49%) | 0/47(0%) | Plus/Minus |
Query 410 RSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 550 +S L++ AR LGETKV FP D M L R+L P P VP N L Subject 4161 KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL 4301
Range 5: 4506 to 4706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 29/67(43%) | 0/67(0%) | Plus/Minus |
Query 5 SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPA 205 S+++ V KLHG+L + GF+N L L L P L MSL K+ LS S L*QGSPA Subject 4506 SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA 4706
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 4359 to 4688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.1 bits(319) | 0.0 | 57/110(52%) | 0/110(0%) | Minus/Plus |
Query 19 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRRDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFINPMFDSRLPCNFKKGSMT 348 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G+SY++N+ S+RF NP+F RLPCN K +T Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLT 4688
Range 2: 4149 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 409 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL 558 + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4149 VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 3: 3954 to 4091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 18/46(39%) | 0/46(0%) | Minus/Plus |
Query 616 VDELRKVKRSALDLLSLNGSKTTYFPSFERAEKLQGCLLGGLTGVI 753 V +L +V SA+ L++NG++ Y PS +RA L G TGV+ Subject 3954 VSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL 4091
Range 4: 4502 to 4702 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 32/67(48%) | 0/67(0%) | Plus/Minus |
Query 5 SANAAVMEPFLKLHGNLESNIGFMNLRLSKLYLYDFPSRSLNMSLCSAPKMALSF*ESYVL*QGSPA 205 S+++ V L+L GNL N GF NL L L L P R L +SL KM LS +S L*QGSPA Subject 4502 SSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA 4702
Nucleotide Sequence (986 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
424.5 | 1268.0 | 18% | 7.935e-118 | 34% | NC_001948 | |
59.3 | 59.3 | 9% | 6.813e-08 | 26% | NC_009892 | |
58.8 | 58.8 | 9% | 9.361e-08 | 26% | NC_018714 | |
57.0 | 57.0 | 9% | 3.335e-07 | 26% | NC_014821 | |
55.1 | 55.1 | 9% | 1.188e-06 | 33% | NC_009383 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1175 to 1978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
424.5 bits(920) | 0.0 | 186/268(69%) | 0/268(0%) | Plus/Plus |
Query 2 ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSWFGLGNAHFNRQRAPYSLGISHWLNSPFSVEHKFAGAINHQILHVALSLVPLSNDPFFKLTPREVDSALSSVRMALGITGQSKLFGFLVNDTLINEMQRRYKLRLAKHLKSLTWYFHFCGCQWXXXXXXXXXXXXGDRKTSFADLDCNVAQIYRLVSAQVTAPGVLLGLTKVYARYSN 805 I+CGRSGSLLMPNISKLVISF CRMMPNALARLSSSFRE SLDSFVY+LEPFNFSVNL+D+TPDFFEHLFLFSCLNELIEED+EEVMD+SWFGLG+ FNRQRAP+ LG S+WLNS FSVEHKF+G IN QI+ V LSL+P S+DP F+ + EV+ ALS V+ AL TGQSKLF FLV+D + E++ YK+ L KH+K+LT F+ CG QWFLL +R NL+FL DR +SFADLDC V ++Y+LV++Q P LL LTKV+ R S+ Subject 1175 INCGRSGSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTINSQIMQVILSLIPFSDDPTFRPSSTEVNLALSEVKAALEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSD 1978
Range 2: 1174 to 1959 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
267.3 bits(577) | 0.0 | 146/262(56%) | 0/262(0%) | Minus/Minus |
Query 1 TLVKPNKTPGAVT*AETKR*I*ATLQSRSAKEVFRSPRNLRLTLRFKRNH*QPQKWKYQVSDFKCLASLNLYLLCISFMRVSFTKKPKSLDCPVIPRAILTLERAESTSLGVSLKKGSFDKGTKDRATCRIWWLMAPANLCSTENGELSQCDIPSEYGAL*RLKCALPSPNHELXXXXXXXXXXXSLRQENKNRCSKKSGVTSIKLTEKLKGSRA*TNESSEVSRKLEDNLAKALGIIRHKNDITSFEILGINREPLRPQLI 786 TLVK ++ G++ T * T QSRSAK+ S RNLRL L +RNH +PQ+ K V F CL L L S + S TK + DCPV A LT + A TS+ LK GS + G KD+ TC I LM P NLCSTEN ELSQ + P + GAL RL C PSPN ELS+TSS SSSI+S RQE +N+CSKKSGV S KLTEKLKGS TNESSE SRKLE++LA A GIIR KND+T+ E+LGI++EPL PQ I Subject 1174 TLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASSAALTSDSARLTSVEDGLKVGSSENGIKDKITCMI*ELMVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKEPLLPQFI 1959
Range 3: 1181 to 1645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 71/155(46%) | 0/155(0%) | Minus/Minus |
Query 8 RINLPRS*LKKGII*QRDQGQSNMQNLVVDGTCKLMLNREWRVKPVRYP**IWSPLTIKVRIAKSKP*TIHNLLNVLFNQLIEAGE*K*VLKEIRGHIYQVN*KIERLKSVDKRVK*SFAET*RQPGQGIRHHPTQK*YHQL*NIGHQ*GTTPPT 472 ++NL R K GII + DQ +N+ +L +DG KL+LN ++ V+P+ P PL I++ + KSKP +H+L NVL +QLI AGE K*+LKEIR +I+ +N KI+ LK V K + + ++ R+PG+ I HHP ++*Y QL N+GH+ TPPT Subject 1181 KVNLCRRWPKSGIIRKWDQR*NNLHDLRIDGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRATPPT 1645
Range 4: 1682 to 1960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 32/93(34%) | 0/93(0%) | Minus/Minus |
Query 509 DLSQTQQDSRGCDLS*NQTINLSNITIKVSKRGLSIAKKSEVNSSIQEKPLTTTKMEIPSK*FQVLGKSQLIPSLHFIYEGIIH*KAKKFRLP 787 D Q +Q R L + IN N+TIK+SK + +K EV +E+PL T+++ S+ F VL K+ LI + + + ++H K ++F LP Subject 1682 DFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LP 1960
Range 5: 1179 to 1646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 68/156(44%) | 0/156(0%) | Minus/Minus |
Query 6 QNQPP*ELA*KRDHLTKGPRTEQHAEFGG*WHLQTYAQQRMES*ASAISLVNMEPSDD*SAHCQVQTMNYP*PPQCPLQSAH*GRRIKIGAQRNQGSHLSS*LKN*KAQERRQTSQVKFRGNLKTTWPRH*ASSDTKMISPALKYWASIGNHSAHN 473 Q P *++A*K DH G + + A F *W L+T AQ ++ S*A+ + PS D* QVQT N P*P Q P +S H GRR +I AQRNQ + +* KN*+AQ Q + + K W H ASS +MI P K WA +HS+HN Subject 1179 QG*PL*KMA*KWDHQKMGSKIK*LA*FEN*WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINAQRNQELYPLN*RKN*RAQVSTQMNLANTLES*KRAWRVHLASSGKRMI*PT*KCWA*AKSHSSHN 1646
Range 6: 1794 to 1922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 17/43(40%) | 0/43(0%) | Minus/Minus |
Query 621 PELKPNDKFEQHYNQGQQKRSFDRQEI*G*LFDSRETIDNHKN 749 P + DK +NQ QQ+ EI*G F TI HKN Subject 1794 PVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN 1922
Range 7: 1332 to 1613 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 46/94(49%) | 0/94(0%) | Plus/Plus |
Query 159 IFQLT**M*PLISLSTYFYSPASMS*LKRTLRRLWIVHGLDLAMRTLIVRGLHIH*GYRTGLTLHSLLSISLQVPSTTKFCMLLCPWSLCQMIP 440 IF L * +* LISLS YF SPA MS* +RTL+R W + GLDL I RG G G T + LS S Q PS K C L S MIP Subject 1332 IFPLI*WI*LLISLSIYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARGPRSFLGLHIGSTPNFQLSTSFQAPSILKSCKLFYL*SHFLMIP 1613
Range 8: 1179 to 1277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 18/33(55%) | 0/33(0%) | Plus/Plus |
Query 6 VVGGVVPY*CPIFQSW*YHFCVG*CLMPWPGCL 104 +VGGV CP F SW YH G*C M PG L Subject 1179 IVGGVALCLCPTFLSWSYHSFAG*CQMHSPGSL 1277
Range 9: 1180 to 1497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 47/106(44%) | 0/106(0%) | Plus/Plus |
Query 7 LWAEWFPIDAQYFKAGDIIFVSDDA*CLGQVVFKFPRNFT*LVCLRS*AFQFFS*LDRCDP*FL*APIFILLPQ*AD*RGH*GGYG*FMVWTWQCAL*SSEGSIFT 324 LW EW AQ+F G II + DDA C Q +F R F +C+ +*A FF * + *FL*A I +LLP+* D G * G+G F+VWTW + S EG + + Subject 1180 LWEEWLFAYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVLS 1497
Range 10: 1764 to 1964 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 26/67(39%) | 0/67(0%) | Plus/Plus |
Query 591 ST*NHLLGISIFVVVNGFS*IEELTSDFLAIERPLLLTLIVMLLKFIVWFQLRSQPLESCWV*LRSM 791 ST* L I V NG S + TS+F LL LIV L KFI R L C * +S+ Subject 1764 ST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSL 1964
Range 1: 1181 to 1453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 24/91(26%) | 0/91(0%) | Plus/Plus |
Query 2 ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 274 ++C + L+PN+ KL+ +F + P+++AR F++ SLD+F+ +E FNFSV ++ + + + ++ DI+ + W Subject 1181 LNCETVNTKLLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW 1453
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 1177 to 1449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 24/91(26%) | 0/91(0%) | Plus/Plus |
Query 2 ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 274 + C + ++P++ ++V F ++ PN ++R ++ LD+F+ LE FNFS+N D++ ++ + L + I+ ++EE S+W Subject 1177 LKCETLNTNMLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW 1449
Range 1: 1177 to 1449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 24/91(26%) | 0/91(0%) | Plus/Plus |
Query 2 ISCGRSGSLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 274 + C + ++P++ ++V F ++ PN +AR ++ LD+F+ LE F+F V ++T D+ + L + + D++E DS+W Subject 1177 LKCDTLNTNMLPDMKRIVQGFFLKLFPNPIARNFKVVQQLHLDNFIETLEDFSFCVPTEELTLDWKDDLEFVNLTFGETDFDLDESFDSTW 1449
Range 1: 1190 to 1441 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 28/84(33%) | 0/84(0%) | Plus/Plus |
Query 23 SLLMPNISKLVISFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDVTPDFFEHLFLFSCLNELIEEDIEEVMDSSW 274 +L+ P + K + MP+ LA SS E SLD FV +EPF F V L+DV ++ + LFS E D+ ++++ + Subject 1190 TLIKPEVIKQFLGRWLGKMPHVLAVRFSSVAEVSLDEFVSQMEPFTFQVKLVDVDWNYHHNWDLFSKAEEDYGVDVCDLLNEGF 1441
Nucleotide Sequence (2651 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2927 to 5137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1635.5 bits(3563) | 0.0 | 669/737(91%) | 0/737(0%) | Plus/Plus |
Query 3 QCDRVVFATTGAGLSKLLDVPRSKKQSILVLEGALAMDTSYGPKILGSFEVFKGDFNIKKIEDGSIFVISYRAPVRSPGKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESIADPALSTQTVLKQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDDGCKVAKAGKSKREGWDVVTFEVFLRKIENLKAGHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 2213 QCDRVVFATTG GLSK+L++PRSKKQSILVLEGAL+++T YGPK+LGSFEVFKGDF+IKK+E+GSIFVI+Y+AP+RS G+LRVH +ECSFSGS+EVLLGCQIEA ADYDIDDFN FSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESE + P LS + KQL +NAYAENEMIALFCIRHHVR I+ITPEYEVSWKFG+ EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINP G++SALFDITNEHIRHVEKIGNGPQSIKVDELR+VKRSALD LSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWLSGIST++IK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDD CKVAKAG+SK+EGWDVVTFEVFLRK+ LKAGHCVIFDEVQLFPPGY+DLCLL IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSK LDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITG+ VE FLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQ Subject 2927 QCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQ 5137
Range 2: 2926 to 5133 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1202.5 bits(2618) | 0.0 | 559/736(76%) | 0/736(0%) | Minus/Minus |
Query 2 PKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRKW*SGFPAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETRMASKEVLDRARRKSCIL*KMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSILYL*DLPSSNLNMSLCSAPSIARSFWESYVL*QGSPASEMKASLLMVNRQRXXXXXXXXXXXXKITQWPAFRFSIFLRNTSKVTTSQPSLFDLPAFATLQPSSISRSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTSLSSSTFMLCGPLPIFSTCLICSLVMSNKADMRPLGLITSISPLMSHLAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHKGHSLSPNFQLTSYSGVMMISLT*CLMQNKAIISFSA*ALSPSCFKTVWVDRAGSAMDSLSTNERMPAFKASPSVLNKKPTECQKQLPSPGTENLLKXXXXXXXXXSI*QPSSTSLDPEKEHSVLWTLNLPGDLTGAL*DITNMEPSSIFLMLKSPLNTSKDPKIFGP*LVSIASAPSRTSIDCFLLLGTSSNLDKPAPVVAKTTRSH* 2209 P+KS+TF+ GSP +FSS TPSF PMLTLKPLKKLGSPGSKS +TFSPL AV+KW* G PAKCERK STL PVMFTKSKL LKRD+AV+H RSSV ESC+++IPP LKF+PVDSPNVSVSCFIPK*D TIFFSSKLET+ ASK D ARRKSCIL K+A*SA AAV+EPFLK*HGSLDSNIGFTNL LS+LYL LPSS+L+MSLCSAP IARSF ESYVL* GSPASEMKASL ++++ RS PGG + TSSKITQWPAF + FLR TSKVTTS PS FDLPA ATLQ SSISRSFLIE A+A LGETKVTNLPSDLFMKLLY+KL PAP VPSTTVNS LI VDIPES G SLNFSSLITPV+PPSKHPC+FSA SKLGK*VI DPFIER+SRADR T +SSTFML GPLPIFSTCL+CSLVMSN A++ P GLITSISP +SHLAQMS ASKASA+YIM RPPP +SSK+* V GLHR* TSTSRLPSAEA+AVIMQPF+GA G K*FD + +IPH+GHS SPNFQLTSYSGV+ I LT C MQN AIISFSA*A S +C + +R+G SLST +R+PAF+ASPSVL+KKPTECQKQLPSPGTE +LKSS+S*SA ASI QPS+TSLDPE EHS L TLNLP DL GAL IT +EPSSIFLM KSPL TSKDP+ FGP* VS+ APSRT IDCFLL G S LD+P PVVA TT SH* Subject 2926 PRKSITFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMTFSPLLAVKKW*RGLPAKCERKLSTLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVSCFIPK*DWTIFFSSKLETKTASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH* 5133
Range 3: 5189 to 5575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.0 bits(620) | 0.0 | 116/129(90%) | 0/129(0%) | Plus/Plus |
Query 2265 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVQE 2651 WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ + HEAVQE Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQE 5575
Range 4: 5188 to 5574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 96/129(74%) | 0/129(0%) | Minus/Minus |
Query 2264 SCTASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLNH 2650 SCTAS + L LAF+G L+RK S+KNFPYG ARL+ AAST G EN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC*V+S*P TSR SF AI PTHLALVDSRLL G+WVLNH Subject 5188 SCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH 5574
Range 5: 2927 to 5128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
736.5 bits(1601) | 0.0 | 357/734(49%) | 0/734(0%) | Minus/Minus |
Query 3 EKHDL*PRITTKLFLSHSFISPNANVEAIKEVGLTGKQVPYHILPTLRRQEVVKWFPSKM*EETLHAYTSNVYQVQIVTKA**GR*PPTIISME*VM*N*NPTMFEVQPR*FTKC*C*LLHTKVRLHNFLFLKA*NQNGI*GGLRPSQKEVMHIVKNGIVSERCSHGALLKMTWQPRLKHWIHKPPALNIIPVGLALK*SQYVTLLSP*YRAVLLGVICALTGVTSK*NESVTSYGQ*TKVNVARRKKLNLIKNHTMACL*IFNLSEKYFKGHNVPTFSL*FACLCHFATIIHFQVFFN*IS*SPPG*NKGHELTFRPLHEALVQKAFACSKSSKHNCQFPRFDI*S*YP*EPWLGIIKFLITYNTS*AS*QTSLQLFSPLKAWKVSYLRSIH*KEVKSRSFHFSQLIHLYALRAIANLLNMSYMFIGYVK*S*HASARINNLDFSINVTLGTNVECFEGLSEVHHVQATTLAQFFKDVICGRSAQIVKDIHLTSAERRGNSGYHAAIQWGTGLKMI*LQAQNST*RPLTISKFPTYLILWGDDDQPHMMPNAE*GYHLVLCISIVTKLLQNSLG*QSWICNGFTFNK*TYASFQSKPVCAQQETH*VPKAVTITRHRKFVKVINVIISRGLNLTTK*YFSRP*KGTFRPVDSQFARRSHRSPVRYYKYGAIFNFLNVEVPFEYLKRSQNLWSIAGIHCKCTFKD*Y*LLLAPRHI*QLR*ACTSCCKDNSVTL 2204 EKH+ *P +TT L L ++FI NANV+A +EV LT +Q+ Y ILPT ++V+ F SK+ E+T H T +V+Q+QIV +A * PP II ++ +M* N +FE+QP *FTKC C L H+KV L LK NQNGI G P Q++VMHI+++ I+SE SH AL ++TWQ +HW+HKPPA +IP+ ALK S+YVTLLS +LL VICALT +TSK*NES+T+Y + ++V+RRK+L+LIKNHT+A L N S++ K + +P F L* C +FA IIHF++ F+*I *S G NKG+E T RP HE LVQ+ K +KH+ QFP +I S Y +P I + LITYN S*A *QTSLQLFSPLKAW+V Y R IH*KE++ S Q IH YALRAI LNM Y+ I YVK + + RIN+ + SI +T NV+ + S +HHV+A +L + K++I S QI+ I+ T ++ N HA IQWG L++I* +A+NST* PLT +FPT I W D +P+++PNAE* HL+L ISI+ +L +N G*+ W T ++ + K + A+ +T+ +PKA+ ITRHR+ VK+IN+IIS LNL Y K F V+ Q A S+ VRYYK + LNV+VPFE KR Q+ W+I + TFK+ *LL APRH * LR* T CCK N VTL Subject 2927 EKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISYDILPTFGC*KMVEGFASKVREKTFHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECELFHSKVGLDYLFLLKTGNQNGIQGTF*PRQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTIICFYG*GTFKNQN*LLFAPRHF*NLR*TRTCCCKHNPVTL 5128
Range 6: 5180 to 5572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 77/131(59%) | 0/131(0%) | Minus/Minus |
Query 2256 LYGFMHQVSIVACIQWNLRKESV**ELPVWLCAPQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLI 2648 LY FM I+ QW+ E +**E P+W PQF SFNL LRK T DSHEEGY I++FMPW+ AFK T +AQLL SSTPM IKELLS FITT+H + Q H ++PPGP * QIT D+GFKPF I Subject 5180 LYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI 5572
Range 7: 3388 to 5127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
482.6 bits(1047) | 0.0 | 266/580(46%) | 0/580(0%) | Plus/Plus |
Query 464 RSSSVNPNCFEATW*QCLCRERDDSLILH*ASCEADHHHPRV*GKLEIWR**VAFMWNFVLAIKSFSTLCPIEWLHDNRYCLCARQT*GGCP*LSVQTFHKSHL*RIVPRWWPEHDVPR*GLRSIRHLCQV*H*WRNRGY*S*RTHVSFI*HNQ*TYKTC*EDWQWPAEHKGG*AERSETICS*PPFNEWIEDNLLSKL*EG*KAAGMFARRLNWCYK**EI**FQAMALRDINFKYQISGIDSCAWNFWSRQKLSVQELHEEV*R*VRDLCFTQEGSS*FN*KRPGNG*WLQSGKGRQIKERRLGRCDL*SISQKD*KSKGRPLCDF**GSAFSSWLR*PLSIDHKK*RFHFTCW*PLSKHI*LPKGPRDTRG*AK*HIEIT*GQVLQV*Y*EPEVCESNV*V*AAMSF*EGLHDCSVR*LCHFSQYA*LPSGSV*DLLRCHSGFKL*GKENCAVLLWYEATNTNIW*INGAELQTWWDFNFT*LIPY**S*VVNGPITL*SQFGLGKHYWCKRGGFPLTFCWETTLPLPDGEEWGECDKGLASR*AQLL*WLQR*HWAK*RSARGKALW*SLAKGHAF 2203 +S S +P+ F +CLCRE DD +ILH A +A H R+* LEI *VA MWN + IKS T+ P EWLHD+ +C + * C LSV T H S+ * + P HDV * + HL +*+ WR+ *S + +*HN * +K C*E+ WP+EHK G* + I PFNEW+ +NLL KL* G*K A MFAR NW YK**E+ * + +A I + Y GID AW W ++ VQE HE+V* *+R+LCF+Q S FN K NG* LQS R +KE R+G + * K + +G PLCDF**G SSW+ + + * FHFTCW* +SKHI*L KG + *A+*H *GQ + V*+ + EVCE NV + AMS +GL DC R*LC+ YA*L G V L C GF+ *G+++ VLLW E +T+IW*IN E Q W + + T* + + *S V I+L QFG G+H+ + G F L CW+T LP + ++WGEC A R*A LL WL R*HW +*R G+ +W* + K +AF Subject 3388 KSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRSLGCRFGFQF*GEKDSPVLLWNETAHTHIW*INWVEFQKWGNSHIT*FLSHR*SAVAYCFISLQPQFGFGEHHRSEGGKFSLALCWQTPLPFFNSQKWGECHTRFAPR*A*LLQWL*R*HWKE*RC*GGEVMW*PMVKSYAF 5127
Range 8: 5173 to 5514 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 63/114(55%) | 0/114(0%) | Plus/Plus |
Query 2249 MLE*GMV*NPYPIK*SGINKGQVGWKDGIEGTP*SEMWL*NDSTVL**T*VWKKRAIEQRV*KI*KHISKA*R*RFGNLPHGCQETSKVF*ASS*SCKIEARKAIREVLTRHFP 2590 ML+* MV*NP+P++*SG+N+GQVG +G+E +WL*NDST+L** * W A EQ +*++*KH+ KA*R F NLPHGC + S++F A *SC+ EA + I E+L R FP Subject 5173 MLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFP 5514
Range 9: 2926 to 3279 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 56/118(47%) | 0/118(0%) | Plus/Plus |
Query 2 SV*PSCLCNNWCRLI*VARCA*EQEAINTSP*RCTCNGYQLWTKDFGIF*GIQRGLQH*EN*RWLHICNILQGSCEISWQIESPQDGMFLFRV*RSTTWLSN*GLC*L*H**L*QIFC 355 SV* C+CNN I* R A EQ+AIN *RC + +LW+K G+F* QRGL H*E+ + CN +QG I WQ+E Q M +FR+ R L +*G+C*L*+** * C Subject 2926 SV*QGCVCNNRSWSI*GFRNASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLC 3279
Range 10: 3903 to 5573 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
530.3 bits(1151) | 0.0 | 289/557(52%) | 0/557(0%) | Plus/Plus |
Query 979 WMS*EK*NDLLLTSFQ*MDRR*LTFQALRGLKSCRDVC*EA*LVL*VMRNLMIPSHGSQGYQLQISNLGN*QLCLELLEQAKAFCTRAS*RGLKVSS*PLFHPGGL*LIQLKKTWKWMMVAKWQRQANQREKVGTL*PLKYFSERLKI*RQAIV*FLMRFSFFLLATLTFVY*P*EVTLSFHLLVTPVKAHMTPKRTARY*GLSKVTY*DYLRASPTGIILRAGGL*IQCLSLGCHVILRRAP*LQRSLTMPFFTICMTSFWLGLRPP*MPFWFQALRKRKLCSLTLV*SN*H*HLVNQRG*TSNMVGF*FHMTHSILMIVGG*RPYHALVTIWTW*TLLV*AWRVSSHILLGNHFTTS*RRRVGRM**GTCFPVSPTSLMASTLALGEMKECERKSFVVILG*RSCFS*AKMRIARLRKLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK*DVVMKRLNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWLSGNV*SFLSLKLKLQN*GAQSHTGSSY*TLSFLRFH*MQATMLT*CMKPYK 2649 WM+ + +D SFQ*M +* T QAL GLKSC+DVC* A*L L*VMR+ ++ + G Y L I + GN* CL L + CTR S*+GL+V+S*PLF P L* IQ K KWM+ AK +Q QR K G * L++ E+L+ *R A V*FLMR S FLL T + V LSFHLLV VKAHMT KR ++ LS+VTY D LRA GI +AGGL* QC + CHV +RA *L SL M ICMT W G + P MPFWF LR+++ S TL *++ H HLVNQ G* S M F +HM MI GG Y A TIW W*T V* W+V S LL N T *+ +VGRM C VS TS +A TLAL MK R+S+VV G*+ CFS KMRI +L++ S NA+M+NGLKP S *VIW+Q GPGG +W *++ + VVMK LN+SLM+IGVE SN*A V+ LKA+ QGIK I+*PSSWLS +V +F S +LKL N*G +H G+SY* LS+ + H* + + MK Y+ Subject 3903 WMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVPWMPFWFPVLRRKR*SSPTLE*NSSHSHLVNQLG*ISKMGEFSYHMIPFTQMIGGGLLLYLASATIWIW*TSQV*GWKVFSRTLLANPSTIF*QPKVGRMSYEICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMKRYR 5573
Range 11: 3162 to 3608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 67/149(45%) | 0/149(0%) | Plus/Plus |
Query 238 AN*ESTGRNVPFQGLEKYYLVVKLRPLLIMTLMTLTNFLCLVMVTAFGTQWVSC*AQTGLL*KLAYVHLLKVNPLQIQLCQPKLF*SNLVTMLMQRTR**PYSALGIM*G*SSSPQSMR*VGNLEIVSGLYVEFCACNQIIFNPVPH*M 684 A * T +N F ++Y +LR +LIM LM LT LCLVM AFG V A L *+ + +V+ +Q+ QP+ F +N MLM R R* YSA G *G S Q+M+ VGN VSG YVEF A NQI N PH*M Subject 3162 AG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*M 3608
Range 12: 2925 to 3125 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 34/67(51%) | 0/67(0%) | Plus/Plus |
Query 1 VSVTELSLQQLVQAYLSC*MCLGARSNQY*SLKVHLQWIPAMDQRFWDLLRYSKGTSTLRKLKMAPY 201 VSVT L LQQ V YL * CLGA+SNQ+ LKV M Q+ W LL++SKGT TLR+ + + Subject 2925 VSVTGLCLQQQVLVYLRF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQF 3125
Range 13: 3648 to 3812 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 19/55(35%) | 0/55(0%) | Plus/Plus |
Query 724 VRWMSLTICADLPQITSLKNCAKVVA*T*CTSLRPSKHSTFVPSVTLMEKSRLLI 888 V+ M IC D I L++ + A T*C L+ + TF +V ME+ + LI Subject 3648 VKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LI 3812
Range 14: 5025 to 5513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 91/163(56%) | 0/163(0%) | Minus/Minus |
Query 2101 GKCLVRTSRMALRASILQLQLEA*KTLDVS*QP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVESFHNHISLHGVPSMPSFQPTWPLLIPDYLMGYGF*TIPHSSIQTQFPQPRNPHLGLRKA*PLAKDHHKAFPLALLHFAQC*R*SH*RSWAH 2589 GK L+R S M AS+ QLQ A K D QP*GRL N +LYAL CFQ H CS+A FH Y HQR VESFHNH + S P + PTWP L PDY G GF*TI H SI T Q NPHL KA* L HH P LH QC*R*SH*RS AH Subject 5025 GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AH 5513
Range 15: 4425 to 4964 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 87/180(48%) | 0/180(0%) | Minus/Minus |
Query 1501 VSQQNVRGNPPRLHQ*CLPSPNCD*SVIGPLTTYDHQYGMSHVKLKSHHV*SSAPLIHQMLVLVASYQSKTAQFSFPQSLKPEWHLRRS*TEPEGSHAYCEKWHSQRTLQSWSPS*NDMAA*TQTLDSQTSGSQYYTCRTCPQVISICHFAQPLVSRGPFGSHMCFDRGHQQVK*KRHFL 2040 V QQ+ R N P *C P+PNC *S I T DH +HV + H *+S LIHQM V S+QS+T PQ+ KP+ H R T P SHAY + H+QR QS SP *+DMA +TL SQTS YT CPQ + +CH AQ PF SHMCFD HQQVK*K H++ Subject 4425 VCQQSARENFPPSDL*CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AVSFQSRTGLSFSPQNWKPKRHPRDLLTSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV 4964
Range 16: 3375 to 4016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 92/214(43%) | 0/214(0%) | Minus/Minus |
Query 451 ANIPAAFQPSQSLESKLSSIHSLKGGQEQIVSLLSAHPPLCSAGHCQSSQHVLYVHWLCQIKLTCVR*D**PRFLH*CHTWHKCRMLRRPQRGTSCSGHHLGTILQRCDLWKVCTDS*GHPPHVCRAQRQ*RLSCSHSMGHRVENDLIASTKFHIKATHYLQISNLPHTLG***SASHDA*CRIRLSSRSLHKHCHQVASKQFGLTELDLQWIH 1092 ANI A FQP+QSL S+L HSLKG + +I + HP LCS GH SQH L H LCQ D* + LH H KC+ ++ Q TSC G Q+ D V TD+ H H + +Q SC+HS+G V +DLI +FHI ATH +ISN H L * A A CRI SS S HKH + K GL +LDL H Subject 3375 ANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAH 4016
Range 17: 2925 to 3341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 63/139(45%) | 0/139(0%) | Minus/Minus |
Query 1 QARLCSTRNPLSAKSSYHHQAQKIC*SHQCHNQQRPQFDNQVVLL*TLKRNIPSCGLSICQEISQEPCKILQIWSHLQFS*C*SPL*IPQKIPKSLVHSWYPLQVHLQGLVLIASCS*AHLAT*ISLHQLLQRQLGHTD 417 Q C +N +AKS+ HHQAQ+ C*+HQ HNQ PQ + + L K +I +C S CQ I PC +LQ + S*C SPL* QK P L H+ + HLQ LIA CS A L *I LLQ Q HTD Subject 2925 QVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQEPKLIAFCSEAFLKP*IDQDLLLQTQPCHTD 3341
Range 18: 4095 to 4259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 29/55(53%) | 0/55(0%) | Minus/Minus |
Query 1171 HHPFPGLF*LN*LEPSWVKQRSRTYLQTXXXXSCTESFCLLQKFQAQLSIPEI*Y 1335 +HPF F*LN L+ W KQR R Y QT S*+SCT + Q +QA+ SIP *Y Subject 4095 YHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*Y 4259
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3471 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
256.7 bits(554) | 0.0 | 114/276(41%) | 0/276(0%) | Plus/Plus |
Query 495 KQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL 1322 KQL N +AE E +A FC + +RL ++ E +W F E L Q NHF+PC P+NGC+I AI+SAL RREVDVL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N +GR+ A F + EH+ H+ + S V +L V SA+ L++NG+++ Y PS +RA L G TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3471 KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 2: 5238 to 5618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 80/127(63%) | 0/127(0%) | Plus/Plus |
Query 2265 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAV 2645 WFKTHIP+ +LE+ RA+WV K+ +E RE R G TT+QF D+H R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VPLN+SH+ +M EAV Subject 5238 WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAV 5618
Range 3: 4764 to 5186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 77/141(55%) | 0/141(0%) | Plus/Plus |
Query 1791 ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 2213 +LVSSFEEKKIV ++ G+K +T+GESTGLNF+ G IL++++S T DRRW TALSRFSH++ +N GV+ + ++HF GKPL+ F T ++ + I DLLPG P GF +G +EGVRE KL GDPWLK +FLGQ Subject 4764 VLVSSFEEKKIVAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNAITHFVGKPLHKFFTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ 5186
Range 4: 3228 to 3476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 35/83(42%) | 0/83(0%) | Plus/Plus |
Query 237 GKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESIADPALSTQ 485 G+LR H EC S E L GC + S ++ D F+ F V DGNCFWHSVG L+ DG LK + + + + P LS Q Subject 3228 GELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLSKQ 3476
Range 5: 4769 to 5182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 61/138(44%) | 0/138(0%) | Minus/Minus |
Query 1796 PKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRKW*SGFPAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLET 2209 P+K + F+ GSP S +S TPS P P G PGS+S+++ V+ *SG P K S +TP+ K *L +RAV+ RS V S KI P KF+PVDSP V F P+* TIFFSSKLET Subject 4769 PRKILVFNHGSPTSLASLTPSSAPTWLWNPSMSSGRPGSRSIMSSLHALFVKNL*SGLPTKWVIALSQVTPMPLMK*MS*LNLERAVHQRRSLVRALSYVTKIAPFWKFNPVDSPYVIHFIFRPR*AATIFFSSKLET 5182
Range 6: 5390 to 5617 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 42/76(55%) | 0/76(0%) | Minus/Minus |
Query 2417 TASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN 2644 TASCI + L F GTL RKVSS+N P G A +FA S G E FLTA+R V S+PLCLGY+ S S AL+N Subject 5390 TASCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN 5617
Range 7: 3632 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 38/92(41%) | 0/92(0%) | Minus/Minus |
Query 656 CSLVMSNKADMRPLGLITSISPLMSHLAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K* 931 CS N A + P L SP +S L Q+ S R M +P P SSK GL +TSTS SAE IA+I PF G QG K* Subject 3632 CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK* 3907
Range 8: 4502 to 4729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 32/76(42%) | 0/76(0%) | Minus/Minus |
Query 1526 SCIL*KMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSILYL*DLPSSNLNMSLCSAPSIARSFWESYVL*QGSPA 1753 SCIL + S+++ V L+ G+L N GF NL L IL L* P L +SL + S +S L*QGSPA Subject 4502 SCILSQRVYSSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA 4729
Range 9: 4163 to 4297 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 19/45(42%) | 0/45(0%) | Minus/Minus |
Query 1187 RSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVN 1321 +S L++ A LLGETKV P D M L ++L P P VP ++ Subject 4163 KS*LMDSASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIIS 4297
Range 10: 3251 to 3415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 23/55(42%) | 0/55(0%) | Minus/Minus |
Query 260 FKASPSVLNKKPTECQKQLPSPGTENLLKXXXXXXXXXSI*QPSSTSLDPEKEHS 424 FK SPS PTECQKQ PS T K S S P S S+ + HS Subject 3251 FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHS 3415
Range 11: 5240 to 5365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 20/42(48%) | 0/42(0%) | Minus/Minus |
Query 2267 SSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLN 2392 SS NC VV P S S TH AL SRL+ G+ VLN Subject 5240 SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN 5365
Range 12: 4359 to 4793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 62/145(43%) | 0/145(0%) | Plus/Plus |
Query 1383 VVTFEVFLRKIENLKAGHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEK 1817 V TFE+F+ ++++K GH V+ DE+QLFPPGY+DL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G+SY++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F + K ++ S E+K Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEKK 4793
Range 13: 4166 to 4267 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 12/34(35%) | 0/34(0%) | Plus/Plus |
Query 1190 DSCAWNFWSRQKLSVQELHEEV*R*VRDLCFTQE 1291 D+ +WN R++ +QE+H EV + C T+E Subject 4166 DNDSWNVRMRKEFLIQEVH*EVPWKSHNFCLTKE 4267
Range 14: 4766 to 4930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.1 bits(42) | 0.0 | 17/55(31%) | 0/55(0%) | Plus/Plus |
Query 1793 SGFKL*GKENCAVLLWYEATNTNIW*INGAELQTWWDFNFT*LIPY**S*VVNGP 1957 + FK *G+++C E ++ *IN + +F+ * Y**S +V+ P Subject 4766 ASFKF*GEKDCRSSSGPEDEMYHVR*INWVKFPEGSNFSHI*ECSY**SALVDCP 4930
Range 15: 4839 to 5165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 33/109(30%) | 0/109(0%) | Minus/Minus |
Query 1866 L*PRITTKLFLSHSFISPNANVEAIKEVGLTGKQVPYHILPTLRRQEVVKWFPSKM*EETLHAYTSNVYQVQIVTKA**GR*PPTIISME*VM*N*NPTMFEVQPR*FT 2192 L*P IT S +FIS N +E+ E + K + I+ +E+VKW K+ + + + +V ++T+ * G P I S ++ +*N ++ E+ P *FT Subject 4839 L*PWITH*FSFSDTFISTNLALESFNEFWPSRK*INNVIVTCPLCEELVKWLTHKVGDCIVPGDAHAINEVNVMTEP*KGSPPTPITSKSTLICD*NCSLLEI*PS*FT 5165
Range 16: 5289 to 5612 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 27/108(25%) | 0/108(0%) | Minus/Minus |
Query 2316 FMHQVSIVACIQWNLRKESV**ELPVWLCAPQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNP 2639 F+H I+ IQ + ++ V E + +FC R + + + H++ I MP +Y+F + +R++ LL + + I ELLS +T + + + NP Subject 5289 FLHHFFIMTAIQRHSFQKGVKQEFAERFGSSKFCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNP 5612
Range 17: 3615 to 3878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 21/88(24%) | 0/88(0%) | Minus/Minus |
Query 639 HASARINNLDFSINVTLGTNVECFEGLSEVHHVQATTLAQFFKDVICGRSAQIVKDIHLTSAERRGNSGYHAAIQWGTGLKMI*LQAQ 902 ++S IN+ +V T+ E E EV + +T FFK+++ R A+ ++I+ + + N + + W ++I L Q Subject 3615 NSSIFINHDQLPTSVNTTTD*ENLE*SGEVKDAETSTFCNFFKEILMSRLAKYSQNINFPAIKCGRNCPNYTPVHWHARFEVIILTNQ 3878
Range 1: 3475 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 116/276(42%) | 0/276(0%) | Plus/Plus |
Query 495 KQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL 1322 KQL +N +AE E +A FC + ++L ++ E +W F E L Q NHF+PC P+NGC+I AIASAL RREVDVL L +P+ +F+E+ +G G ++ L+ FE F IC D GE+ ++N GR+ A F + EH+ H+ + S V +L V SA+ L+MNG++I Y PS +RA L L G TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3475 KQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 2: 4768 to 5190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 78/141(55%) | 0/141(0%) | Plus/Plus |
Query 1791 ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 2213 +LVSSFEEKKI+ ++ G+K +T+GESTGLNF+ G IL++++S T DRRW TALSRFSH++ +N GV+ + L+HF GKPL+ FLT ++ + I DLLPG P GF +G +EGVRE KL GDPWLK +FLGQ Subject 4768 VLVSSFEEKKIIAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNALTHFVGKPLHKFLTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ 5190
Range 3: 5242 to 5622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 76/127(60%) | 0/127(0%) | Plus/Plus |
Query 2265 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAV 2645 WFKTH+P+ LE+ RA+WV ++ KE RE R G TT+QF DEH R +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VPL+ H++ +M AV Subject 5242 WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAV 5622
Range 4: 3232 to 3480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 33/83(40%) | 0/83(0%) | Plus/Plus |
Query 237 GKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESIADPALSTQ 485 G+LR H EC S E L GC + S ++ D ++ F V DGNCFWHSVG L+ DG +K + + + + P LS Q Subject 3232 GELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLSKQ 3480
Range 5: 4770 to 5189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 63/140(45%) | 0/140(0%) | Minus/Minus |
Query 1793 WPKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRKW*SGFPAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETR 2212 WP+K + F+QGSP S +SRTPS P KP G PG++S+++ V+ G P KC + S +TP+ F K *L DRAV+HLRS V S +I P K PVDSP V P+ IFFSSKLETR Subject 4770 WPRKILVFNQGSPTSLASRTPSSAPTWL*KPSISSGRPGNRSIMSSLQALLVKNLCRGLPTKCVKALSQVTPIPFIK*IS*LNLDRAVHHLRSLVKALS*VTRIAPF*KLRPVDSP*VMHFILRPRCAAIIFFSSKLETR 5189
Range 6: 5244 to 5621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 61/126(48%) | 0/126(0%) | Minus/Minus |
Query 2267 TASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLN 2644 TA+ I L L GTL +KVS +NFP G A LN A S G E F TA++ V S+PLCLG M S LS AL++ S L LCSS NC VV P SR S + TH AL S + G VLN Subject 5244 TANSIISLLCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN 5621
Range 7: 3570 to 3911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 42/114(37%) | 0/114(0%) | Minus/Minus |
Query 590 CSLVMSNKADMRPLGLITSISPLMSHLAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHKGHSLSPNFQLTS 931 CS N A + P L SP +S L Q+ SK+ R + +P P SS GL R +TSTS AEA+A++ QPF G QG K* + K+ S N Q+ S Subject 3570 CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS 3911
Range 8: 4167 to 4301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 24/45(53%) | 0/45(0%) | Minus/Minus |
Query 1187 RSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVN 1321 +S L++ AR LLGETKV P D M L R+LLP PKVP N Subject 4167 KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITN 4301
Range 9: 4506 to 4706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 30/67(45%) | 0/67(0%) | Minus/Minus |
Query 1526 SANAAVMEPFLK*HGSLDSNIGFTNLRLSILYL*DLPSSNLNMSLCSAPSIARSFWESYVL*QGSPA 1726 S+++ V K HGSL + GF N L +L L* LP + L MSL I S S L*QGSPA Subject 4506 SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA 4706
Range 10: 3348 to 3419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 15/24(62%) | 0/24(0%) | Minus/Minus |
Query 353 FKASPSVLNKKPTECQKQLPSPGT 424 F SPS + PTECQKQLPS T Subject 3348 FMHSPSTPIRGPTECQKQLPSAST 3419
Range 11: 3948 to 4091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 20/48(42%) | 0/48(0%) | Minus/Minus |
Query 968 TPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTSLSSSTFML 1111 TPV P SK A S G * I PFI R A T S T L Subject 3948 TPVAPSSKLSSKVEARSMDGL*SISAPFIARNLMALFDTRFRSDTIGL 4091
Range 12: 4363 to 4803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 63/147(43%) | 0/147(0%) | Plus/Plus |
Query 1383 VVTFEVFLRKIENLKAGHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI 1823 V TFE+F+ ++++K GH V+ DE+QLFPPGY+DL +L ++ + I +AGDPCQS YDS DR I +SDI+R+L G++Y++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F + K ++ S E+K I Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEFSMMGRKDCPVVLVSSFEEKKII 4803
Range 13: 5400 to 5525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 17/42(40%) | 0/42(0%) | Plus/Plus |
Query 2423 QRV*KI*KHISKA*R*RFGNLPHGCQETSKVF*ASS*SCKIE 2548 QR *K+* H+ K * + ++ +GC+E K+ +S *+C+IE Subject 5400 QRS*KV*SHLPKT*GN*YRHVLNGCKEKVKLLLSSC*TCQIE 5525
Range 14: 4182 to 4271 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 12/30(40%) | 0/30(0%) | Plus/Plus |
Query 1202 WNFWSRQKLSVQELHEEV*R*VRDLCFTQE 1291 WNFW K S Q++H ++ R LCF+++ Subject 4182 WNFWLW*KFSFQKIH*KITRKGNHLCFSKK 4271
Range 15: 3615 to 3716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 11/34(32%) | 0/34(0%) | Plus/Plus |
Query 635 NFVLAIKSFSTLCPIEWLHDNRYCLCARQT*GGC 736 N L+ +SF L +WL +C C + G C Subject 3615 NLNLSRQSFQALHACKWLRH*GHCFCFKSERG*C 3716
Range 16: 5000 to 5170 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 19/57(33%) | 0/57(0%) | Plus/Plus |
Query 2023 HILLGNHFTTS*RRRVGRM**GTCFPVSPTSLMASTLALGEMKECERKSFVVILG*R 2193 HILL N + * R + M C+ + + L LG+M+ ER + + I G*R Subject 5000 HILLVNPCISF*PRELAMMTLLICYLAAQS*LKVFRAKLGQMRAFERLN*LEIPG*R 5170
Range 17: 5236 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 28/97(29%) | 0/97(0%) | Minus/Minus |
Query 2259 PQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFL 2549 PQF F+ + * F SH E I + M W+ F F+ V + +FI EL + S F++ L ++P P + W M +P L Subject 5236 PQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPIL 5526
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 4772 to 5158 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.8 bits(410) | 0.0 | 79/129(61%) | 0/129(0%) | Plus/Plus |
Query 2265 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVQE 2651 WFKTH+PL LES RA WV ++ KE+REVRCG ETT QF D+H L+NA ERFE+IYPRH+G+DSVTFLMAV+KRL FS+P VE+AKL RAKPYGKFLL+ FL ++PL ++ L A +E Subject 4772 WFKTHLPLFELESIRAGWVHRIMNKEYREVRCGSETTAQFPDDHPNRSKITLANAAERFEAIYPRHRGSDSVTFLMAVKKRLSFSRPSVESAKLNRAKPYGKFLLNEFLKRIPLKGGLDSALFSRAKRE 5158
Range 2: 4277 to 4720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 76/148(51%) | 0/148(0%) | Plus/Plus |
Query 1770 SKTSLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQ 2213 S T D +LVSSFEEKKI+ ++ G LTFGESTGL F G ILISH+S T +RRW+TALSRF N+ VN+ G E F G+ L+ FLT + I D LPG P N F +GR+EGV E KL GDPWLK + L Q Subject 4277 SNTEFDVVLVSSFEEKKIIWAHLGRDVEVLTFGESTGLTFNRGIILISHESTLTSERRWITALSRFRLNIIFVNLIGNCAEDVCQVFHGRTLFRFLTKTATIANIVDQLPGYPELTNDFGDKVGRSEGVMEAKLTGDPWLKTEIDLLQ 4720
Range 3: 3953 to 4225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 46/91(51%) | 0/91(0%) | Plus/Plus |
Query 1440 VIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMT 1712 V+ DEVQL+PPGY+DL + + + I L+GDPCQS YDS KDRA+ + DI +LE K Y++N SRRF + MF RLPC +MT Subject 3953 VVLDEVQLYPPGYLDLMMFCLSPNCQIYLSGDPCQSDYDSAKDRALFDGLRGDIFEVLEAKKYKFNASSRRFQSKMFIGRLPCRMDTKAMT 4225
Range 4: 3572 to 3859 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 46/96(48%) | 0/96(0%) | Plus/Plus |
Query 1035 SKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDL 1322 S++ Y PS+ERA L+ LL G TG++ D N K WL+ N + R L VVLGTFG+GKS L+K F+ ++ + + FVSPRR+LA+ IK+DL Subject 3572 SEVDYKPSWERARNLEESLLNGTTGILCDRTINLQKNWLTHDRKLNDEVRSLGVVLGTFGSGKSTLFKRFIVKNPSRSIVFVSPRRSLADQIKEDL 3859
Range 5: 3182 to 3496 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 37/105(35%) | 0/105(0%) | Plus/Plus |
Query 645 LQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGN 959 L HF+P P+NGC++ +IA LG+ E +L+ + RP+ I E L +G GLN+ L AF F ICA+ + +N G + A +++ + HI ++ K N Subject 3182 LSGEHFEPALPVNGCVVKSIAETLGQTEAKILSVVGRPTNRLILEGLVEGDGLNIEDLEAAFAIFGICARVSTERGVFTLNKDGNLHANYELKSGHIMYLRKAPN 3496
Range 6: 2804 to 2965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 25/54(46%) | 0/54(0%) | Plus/Plus |
Query 264 CSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALK 425 C G E L I + Y +F+ F VPGDG+CFWHS+G LL DG LK Subject 2804 CGEFGDTESLFDVLIRRNFSYSAKNFHTFPVPGDGSCFWHSLGALLGVDGEELK 2965
Range 7: 3026 to 3139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 15/38(39%) | 0/38(0%) | Plus/Plus |
Query 495 KQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKF 608 KQ+ YAE E IA FC V L+++ P++ S++F Subject 3026 KQMEGKQYAERESIAAFCRIQSVHLVVLLPDHNFSYEF 3139
Range 8: 4774 to 5115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 59/114(52%) | 0/114(0%) | Minus/Minus |
Query 2267 FSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLN 2608 FSG L R +KNFP G A + A ST G E F TA++KVTESLPLCLG M SNLS A L SS NC VVS P TS S I TH AL+DS G VLN Subject 4774 FSGILFRNSFNKNFP*GLALFSLADSTDGREKLSLFFTAIKKVTESLPLCLG*MASNLSAAFAKVILDLFGWSSGNCAVVSEPQRTSLYSLFIIR*THPALIDSSSNKGRCVLN 5115
Range 9: 4279 to 4542 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 40/88(45%) | 0/88(0%) | Minus/Minus |
Query 1772 PAKCERKPSTLTPVMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETRMASKEVL 2035 P K + S P+ FT L +RAV HL S V S EI+I P LK +PVDSP V S +P+ IFFSSKL+T+ S VL Subject 4279 PWKTWQTSSAQFPMRFTNMIFNLNLERAVIHLLSLVRVLS*EIRIIPLLKVNPVDSPKVRTSTSLPRWAQIIFFSSKLDTKTTSNSVL 4542
Range 10: 4594 to 4719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 22/42(52%) | 0/42(0%) | Minus/Minus |
Query 2087 WPKKSMTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKS 2212 W + F+QGSP SF+S TPS RP L+ K L G PGS S Subject 4594 WRRSISVFNQGSPVSFASITPSERPTLSPKSLVSSG*PGSWS 4719
Range 11: 3730 to 3858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 23/43(53%) | 0/43(0%) | Minus/Minus |
Query 1193 RSFLIELARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTT 1321 RS LI A+ LLG+TK +L M LL R L P P VPSTT Subject 3730 RSSLI*SAKDLLGDTKTMDLEGFFTMNLLKRVLFPDPNVPSTT 3858
Range 12: 3196 to 3390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 24/65(37%) | 0/65(0%) | Minus/Minus |
Query 659 LAQMSNASKASARYIMFRPPPWHNSSKM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K 853 LAQM +KA+++ MF+P P S+M GL S P AI + QPF G G K Subject 3196 LAQMPKIAKAASKSSMFKPSPSTKPSRMSLFVGLPTTESIFASVWPRVSAIDLTTQPFTGRAGSK 3390
Range 13: 2878 to 2958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 15/27(56%) | 0/27(0%) | Minus/Minus |
Query 338 ASPSVLNKKPTECQKQLPSPGTENLLK 418 +SPS ++ P CQKQLPSPGT + K Subject 2878 SSPSTPSRAPKLCQKQLPSPGTGKVWK 2958
Rubus canadensis virus 1 isolate BM-01, complete genome
Range 1: 4825 to 5211 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.9 bits(406) | 0.0 | 77/129(60%) | 0/129(0%) | Plus/Plus |
Query 2265 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVQE 2651 WFKTH+PLS ES R +W+ ++ +E RE R G E + QF +EH G+ LSNA ER+E+IYPRHKG DSVTFLMAV KRL FS+P VE+AKLRRA+ +GK +LD FL VPL +HN N+M EAV E Subject 4825 WFKTHVPLSEQESCRIQWLNRLLSREAREKRMGSEISTQFAEEHHPGQGSALSNAAERYEAIYPRHKGGDSVTFLMAVAKRLTFSRPAVESAKLRRAENFGKMMLDKFLKHVPLRRAHNQNMMAEAVAE 5211
Range 2: 4342 to 4689 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 58/116(50%) | 0/116(0%) | Plus/Plus |
Query 1779 SLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGVSVEGFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGF 2126 S+D ILVS FEEK+I S+ G LTFGESTGL F+ G ILI+ DSF +RW+TAL RF L N+T +S E G+PLY FLT K+ + + ++LPG+PNF GF Subject 4342 SVDVILVSGFEEKRICWSHLGAGNKCLTFGESTGLTFESGIILITSDSFLCGKKRWITALPRFRKLLVFSNLTNLSYEDIAQKAFGEPLYKFLTEKASTDDLLEILPGKPNFVKGF 4689
Range 3: 3997 to 4272 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 52/92(57%) | 0/92(0%) | Plus/Plus |
Query 1431 GHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGS 1706 G VI DEVQL+PPGYVDL + I SD + L GDPCQS YDS KDR I + DI+ +L KSY +N+ESRRFV +F RLPC F G+ Subject 3997 GTVVIVDEVQLYPPGYVDLLCMLISSDCKVFLTGDPCQSDYDSDKDRMIFYGMEPDIMHILNEKSYNFNVESRRFVGSIFRGRLPCEFLNGT 4272
Range 4: 3520 to 3894 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 48/125(38%) | 0/125(0%) | Plus/Plus |
Query 969 SIKVDELREVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDDGCK 1343 S+ V L V + L+++S +++ Y PSF+RA L LL G TGV+ N+ +L G + R L ++LGTFG+GKSF +K F+K + + V FVSPR+ALA+ I +++ G K Subject 3520 SLPVSNLIPVAKDQLEVISKCCTEVEYTPSFDRANTLSESLLNGTTGVLCSRNLNNQVDFLEGNEKLCKEKRNLMILLGTFGSGKSFFFKKFIKDNSMRKVIFVSPRKALADIILQEISGIKGKK 3894
Range 5: 3187 to 3483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 36/99(36%) | 0/99(0%) | Plus/Plus |
Query 639 LCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHI 935 L + NHF+PC P NGC++ A+A+ +G++E+DVL+YL R I+ ++ G GL+++ AF F I A + +G++ IN +G + F +T++H+ Subject 3187 LVCKGNHFEPCLPKNGCVVRAVAACIGKKEIDVLSYLGRGEFTDIYNQIMSGNGLSILDFERAFSMFGIKAFLETDGKVLEINSNGSIEGSFRLTDDHL 3483
Range 6: 2713 to 2979 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 31/89(35%) | 0/89(0%) | Plus/Plus |
Query 159 KGDFNIKKIEDGSIFVISYRAPVRSPGKLRVHRTECSFSGSREVLLGCQIEASADYDIDDFNKFSVPGDGNCFWHSVGFLLSTDGLALK 425 K + +I+ + +G + + S G+ VH + C E L +I AS D D +F F VP DG+CFWHSVG+L T+G+ ++ Subject 2713 KFEHSIRSMTEGRVSYTFRKVVHDSLGQEIVHDSICLLDCFSENLFDVKISASQDLDFKNFQTFPVPADGDCFWHSVGYLFGTNGIDMR 2979
Range 7: 4696 to 4773 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 16/26(62%) | 0/26(0%) | Plus/Plus |
Query 2136 IGRNEGVREEKLCGDPWLKVMLFLGQ 2213 +G++EG +E KL GDPWLK +FLGQ Subject 4696 VGKSEGEKEVKLQGDPWLKEKIFLGQ 4773
Range 8: 3058 to 3150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 11/31(35%) | 0/31(0%) | Plus/Plus |
Query 516 YAENEMIALFCIRHHVRLIIITPEYEVSWKF 608 +AE E +ALF V + + E V+W F Subject 3058 WAEREAVALFARVMGVEVTVFYIEEGVNWTF 3150
Range 9: 4824 to 5210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 59/129(46%) | 0/129(0%) | Minus/Minus |
Query 2264 SCTASCIRLALWLAFSGTLERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNC*VVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLNH 2650 S TAS I L GT + +SS FP A LN A ST GLE TA++KVTES PLCLGY+ S LS A P CSS NC +S P L S S H L DS L G VLNH Subject 4824 SATASAIMF*L*ALLKGTCFKNLSSIIFPKFSALLNLADSTAGLEKVNLLATAIKKVTESPPLCLGYIASYLSAAFDKADPCPG*CSSANCVEISEPILFSLASLLNNLFNHWILQDSCSLKGT*VLNH 5210
Range 10: 4347 to 4559 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 33/71(46%) | 0/71(0%) | Minus/Minus |
Query 1784 VMFTKSKL*LKRDRAVNHLRSSVWNESCEIKIPPCLKFSPVDSPNVSVSCFIPK*DCTIFFSSKLETRMAS 1996 V F K++ RAV HL NES I+I P PVDSPNV P+*D I FSSK ETR+ S Subject 4347 VKFEKTRSFRNLGRAVIHLFLPQRNESDVIRIIPDSNVKPVDSPNVRHLLPAPR*DQQILFSSKPETRITS 4559
Range 11: 3603 to 3851 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 31/83(37%) | 0/83(0%) | Minus/Minus |
Query 1052 ARALLGETKVTNLPSDLFMKLLYRKLLPAPKVPSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLG 1300 ARA LGETK+T L M L +KL P PKVPS + + P F TPV P ++ ALSK G Subject 3603 ARAFLGETKITFLIELSLMNFLKKKLFPDPKVPSKIIKFLFSLHNFSFPSRKST*LFRFLEHNTPVVPFNRDSDKVFALSKEG 3851
Range 12: 2907 to 2966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 15/20(75%) | 0/20(0%) | Minus/Minus |
Query 353 PSVLNKKPTECQKQLPSPGT 412 P V NK PTECQKQ PS GT Subject 2907 PLVPNKYPTECQKQSPSAGT 2966
Range 13: 4698 to 4769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 11/24(46%) | 0/24(0%) | Minus/Minus |
Query 2138 PKKSMTFSQGSPQSFSSRTPSFRP 2209 P+K +FS GSP + +S +PS P Subject 4698 PRKIFSFSHGSPCNLTSFSPSDLP 4769
Range 14: 4819 to 5199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 43/127(34%) | 0/127(0%) | Minus/Minus |
Query 2259 FMHQVSIVACIQWNLRKESV**ELPVWLCAPQFCSFNLRLRKL*TFPDSHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLSRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFL 2639 F H V IV+ Q N+ ++ V* L L +PQF + R RK SH+E +RI FMP +Y F SF + Q + MF +L F T + F P F +T D+ FKP + Subject 4819 FSHHVLIVSPSQGNMLQKFV*HHLSEILSSPQFGRLHCRPRKSQPLSHSHQESHRITPFMPRVYCFISFCCI*QSGSLPRMMFFSKLCGNFRTHPLLSCFPTQQPVQPLDSAGFLLTQRDVSFKPLI 5199
Range 15: 2875 to 2946 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 12/24(50%) | 0/24(0%) | Minus/Minus |
Query 321 TH*VPKAVTITRHRKFVKVINVII 392 +H*+PK +TI HRK +KV + I Subject 2875 SH*MPKTITIRWHRKSLKVFKIKI 2946
Range 16: 4348 to 4434 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 13/29(45%) | 0/29(0%) | Minus/Minus |
Query 1785 FTKC*C*LLHTKVRLHNFLFLKA*NQNGI 1871 FTKC + +KVR N L K N+N I Subject 4348 FTKCQTFVTRSKVRPANPLLFKTGNKNYI 4434
Range 17: 4994 to 5110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 21/39(54%) | 0/39(0%) | Plus/Plus |
Query 2434 KDLKAYIQGIKVTIR*PSSWLSGNV*SFLSLKLKLQN*G 2550 KD+K Y GIK IR* S WL * FL L+ L N*G Subject 4994 KDMKQYTLGIKGVIR*LS*WLWLRG*LFLGLQWSLPN*G 5110
Range 18: 2837 to 2944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 13/36(36%) | 0/36(0%) | Plus/Plus |
Query 283 EKYYLVVKLRPLLIMTLMTLTNFLCLVMVTAFGTQW 390 ++ + + K + I+ L T FLC MV FG QW Subject 2837 QRTFSMSKYQQAKILILKTFRLFLCQRMVIVFGIQW 2944
Range 19: 4349 to 4510 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 21/54(39%) | 0/54(0%) | Plus/Plus |
Query 1786 MPFWFQALRKRKLCSLTLV*SN*H*HLVNQRG*TSNMVGF*FHMTHSILMIVGG 1947 M F F L++R LTL *HLVN + * + F* H HS + GG Subject 4349 M*FLFPVLKRRGFAGLTLERVTNV*HLVNPQV*RLSQG*F**HQIHSFVARKGG 4510
Nucleotide Sequence (1752 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1055.9 | 4059.8 | 27% | 0 | 46% | NC_001948 | |
285.6 | 1199.6 | 45% | 1.039e-155 | 27% | NC_009892 | |
265.5 | 1185.8 | 38% | 5.62e-147 | 27% | NC_003462 | |
259.5 | 1132.1 | 38% | 3.119e-147 | 39% | NC_014821 | |
278.7 | 1123.8 | 47% | 1.055e-143 | 33% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6041 to 7714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1055.9 bits(2298) | 0.0 | 439/558(79%) | 0/558(0%) | Minus/Plus |
Query 74 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFELDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCKLGQNCHSVDDRLGHWLGAAFPKKVKFAILRGQHTSISTWRTL*GRHQKHNILWSQTVFPELWAFWSV*EFCTFNNCDSINGLHICTICLEFWFL*AL*LQP*SLHMSTAIMVIVRVVS*GLQGSQY*LKIVAQVRHLLQQLRKC*EV*R 1747 LGSF+IMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCAN RLRLKTEHEGFLNMICLKAKVQFV+NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+F AFTAGVPD+PNL+GRYIKPYSPGCAV G++NILDEYLSV D SGFDVLFSDPYQNIS+P+EAHFIKSKTCRFG NTCKYL SFGF V SDGLD+VI GSPF LDVEGVLICFGKEAVDLAVAH+S+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFSA C+LG+N +S+D LGHW AAF ++VK + RGQH SI + L GR++K+N+LWS+ + P+LW +*EFC N C N +H C +CLEFW * L*L SL M TA++ +V S G SQ+*LK AQVR L R+C EV*R Subject 6041 LGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*R 7714
Range 2: 6685 to 7773 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
482.6 bits(1047) | 0.0 | 225/363(62%) | 0/363(0%) | Plus/Minus |
Query 15 HLTMLTMTINFFTNMANP*SLQTS*HFLNC*SKCLTWATIFN*Y*LPCSPYETTLTITIIAVDMCKD*GCNYSAYKNQNSKQIVHIWRPLILSQLLKVQNSQTDQKAQSSGKTVWDHNMLCFWCRPYNVLHVEIDVCCPLSMANLTFLGNAAPSQCPSLSSTE*QFWPNLQVAEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNSNGEPVITSSSPSLRTLKPKDRRYLHVFSPNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 1103 H LTM INFF + ANP*SLQTS H L+ K LTWA +FN *L P E TL + AV M KD NY++Y++QNSKQ +H+ L L Q L+ QNSQ + +QS G+ DH+ L F RP N ID CCPL+ +LT NAA +QCPS S E F PN Q AEKA +CMIINF LCLVAAM*NQCLSS VGSLDF +VTT V P TSQG+L SE CATA+STASLPK I TPSTS+ G+P +T S PSL TLKPK+ RYL VF+PNLQV D MK ASLG L+F YGSENSTSKPE S TD+YSSS+ P TA PGE GLMYLP RLG+SGTPAVKA+K SSS +SSLIK Subject 6685 HSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 7773
Range 3: 6040 to 6603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.5 bits(704) | 0.0 | 150/188(80%) | 0/188(0%) | Plus/Minus |
Query 1185 DKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS 1748 D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SP+ A*+TSIA*LS+QFSRLPIS AM I SQIN*GFLKIPSLNKHHPQNVG TN TLALRQI+FRKPSCSVLS NL AH+SSPANAIDS+PVSSYL+KVNN+ AIVLN+ VLASPVNLI+ DPS Subject 6040 DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLRLAHMSSPANAIDSEPVSSYLRKVNNMLAIVLNRNVLASPVNLIIENDPS 6603
Range 4: 6464 to 7774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
524.3 bits(1138) | 0.0 | 250/437(57%) | 0/437(0%) | Plus/Minus |
Query 14 PSNNVNNDNQFLHQYG*PLKPSNLLTLP*LLKQVPHLGHNFQLILTPL*PL*DNPYYHHYCCRHVXXXXXXXXXXXEPEFQTDSTYMEAVNTITIIKGAKFSD*PKSPELGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIVRNRQINCLLAKTN*DALHI*LKR*TSNHFIKPITTHIKTKG*KVLACILTKSAGLGLYEVSLPRNTDILIWVRE*HVKTGNVINRQILIKYVYPPFYSTTRRVWLDVPPRKIGSVGNSGCEGCETLVLSDELSYQTTFTATRNTMNDNWKSEHTIDTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV 1324 P + NNDNQFL Q+G*PLKPSNL P Q PHLG +FQ LT P * N HYCC H QG G QLQ L PEFQTD+T M A+ +T IKG KFSD P PELGKDC GPQ V+L VPSL*RPP GN* MLSPE G+FDFLRKCST PMPKP VNGV V AQFAGC*KGI LHDYQ L +SC SNV+PV I+ G IS*FQ ++K TS TR FE +VRN +I+CLL K * +I* KR N F++ +T ++KT+G K+ A I K L E+ L RN D+L+WVRE H+KT +++ Q+LIKY+ P++ T R+ L+VP +I +V N+ CE E L+L + L Y TTFT TR+TMND WK +HT +T+KLK Q FN*+IHN MPNT*GLI SFK + N*ASHL+L+ +QE +T+++ Subject 6464 PFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM 7774
Range 5: 6056 to 6424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 61/123(50%) | 0/123(0%) | Plus/Minus |
Query 1364 LTQPVGIGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHY 1732 L+Q V IG L II+N I QV H SNA LP+ LR L+DPF + TPS +C + ++L LKANH+Q+T ML FKP ++ H+I K *L C FVP +G+QH+ H V+QK G K HY Subject 6056 LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD*LRLLEDPFLK*TPSAECGIGNKLNLGLKANHVQKTLMLCFKPQPSISTHVITCKCY*LRAC*FVPQKGEQHVSHSVKQKCAGLPSKPHY 6424
Range 6: 6708 to 7544 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
344.7 bits(746) | 0.0 | 170/279(61%) | 0/279(0%) | Minus/Plus |
Query 244 RTRVSQPSQPEFPTLPIFLGGTSSHTLLVVL*KGG*TYLMSICLLMTFPVLTCYSLTHIKISVFRGRLTS*SPRPADLVRIHASTFYPLVLMCVVMGLMK*LLVHRLS*MWRAS*FVLARRQLIWRLRTIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTASIYVLSVWNSG 1080 R R+S SQ F T I GT S L V +G YLMS C F VL C S TH K S F R S S + L I A+ F P VL V K L L *M + *+ L RRQ I LRT SN+LV+ EV L +*NQEI+P I TG TLL QD R+**SCS+MPFQQPANWAKT+TPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGP+QSFPSSG+FGQSENF PL++VI L A I+VLSVWNSG Subject 6708 RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG 7544
Range 7: 6075 to 6425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 59/117(50%) | 0/117(0%) | Minus/Plus |
Query 1363 KPVPFCSTQWQICCLPS*GTN*QGPSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWVS 1713 +P FC T W CC P *GTN*Q SQ L+ M C GLK SM+V * *FALR +++ H DGV +KGS R+LN* G +ALL +W TW+I L IM+ R PM T W S Subject 6075 RPAHFCLTLWLTCCSPF*GTN*QALSQ*HLQVMTCVLIEGCGLKQSMRVF*T*FALRPRFSLFPIPHSADGVYLRKGSSRSLN*SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES 6425
Range 8: 6439 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 37/66(56%) | 0/66(0%) | Minus/Plus |
Query 1152 DE*RRS*SALQLCAVPG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*CA 1349 D+ RS L LC + G + A DEMLNF +*SY LGLK LA +YYE* S*S V +*VC C CA Subject 6439 DDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA 6636
Range 9: 7590 to 7745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 30/52(58%) | 0/52(0%) | Minus/Plus |
Query 43 QQ*W***GLSHKGYRGVNIN*KLWPK*GTCFNS*GSVRRFEGFRG*PYW*RN 198 QQ*W L H G+ VN +*KL PK*G C + G RFEGFRG*P *RN Subject 7590 QQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN 7745
Range 10: 6273 to 6980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 123/236(52%) | 0/236(0%) | Plus/Minus |
Query 808 *NQRIEGTCMYSHQICRSWTL*SEPPSEH*YFDMGQRIARQNRKCHQQTDTHQVCLSSLLQHNQESMA*CTSQKDWECXXXXXXXXXNSRPQ**ALLSNYFYRYQEHYERQLEI*AHYRHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PGTAHSCSALQLLLHSSFQLTTHPTCRHRTPQLHNYQCNFPGYPFHEQCKFSPKSIEVS*RSLL*TNTIHKM 1515 *N+R + C YS Q + T *+ P E * F MG R A QN K +T THQV SL H E+ A*CT D C E L*+L*NS P+ A L NYFY YQ HYE LEI*AH +H QTQ T L*L+YS* S++AK+LRPN *LQ KLSISS A *P H+ + LL SSFQ P HR P HN Q N PG P QC +P+ IE S*RSL * NTI +M Subject 6273 *NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRLIEAS*RSLP*INTIRRM 6980
Range 11: 7032 to 7478 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 77/149(52%) | 0/149(0%) | Plus/Minus |
Query 310 KILRLTKKPRARERLSGTTICYAFGAVPITSSMWKLMYVVP*VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SRNRAQPPNQLPPCQNKLGRPPHL 756 KILRL + PRA E L TT+ Y F VP+T ++ +LM VVP*+ I*L +MQH+ NAQA Q S F PI RLLKRH TA*LS S VL QQC+TSAY DLLIS + +L HK +* ++ AQ + LPP Q+ L HL Subject 7032 KILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHL 7478
Range 12: 7533 to 7727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 51/65(78%) | 0/65(0%) | Plus/Minus |
Query 61 LTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQXXXXXXXXXTCARIRVAITAPTRTRIP 255 LTPKAFKPP+TS TV+A ASLGPQFSI IDSPVALM+QP PLLLST ARI +AIT PT+TRIP Subject 7533 LTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIP 7727
Range 13: 6162 to 6245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 15/28(54%) | 0/28(0%) | Plus/Minus |
Query 1543 P*GKSYSGNLHAQF*ALICCLRTYHRPQ 1626 P*GKS S N HA F*A T H Q Subject 6162 P*GKSCSENPHALF*AATFD*HTCHHLQ 6245
Range 14: 7516 to 7779 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 72/88(82%) | 0/88(0%) | Minus/Plus |
Query 9 YMYYLFGILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDCHC*HC*MAS 272 YMY LFGILVLVG VIA ILAHVDS++G+ +GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS EEID HC* *MAS Subject 7516 YMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MAS 7779
Range 15: 6040 to 6390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 54/117(46%) | 0/117(0%) | Minus/Plus |
Query 1398 AWVFCHNEIYG*SQYLFVQHNGKYVVYLLKVRTDRVRVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ETSIDLGENLHCS*NG*PGKLH**LC 1748 A + +NE+Y Q++ V H G +VV+L +VRT+R+ VN +C *+V ++ A*N A* F E+DLP*G ++ + +IL MVF+ RDL E SI+LG ++HC +G PG+L+* LC Subject 6040 ARIILYNEVYWGGQHISV*HYG*HVVHLSEVRTNRL*VNSICR**HVC*SKVAA*NRA*GFSEHDLP*GQGSVCFQSHILRMVFI*GRDLQEASINLGADMHC*GDGQPGELY*QLC 6390
Range 16: 7033 to 7278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 43/82(52%) | 0/82(0%) | Minus/Plus |
Query 510 RCGGRPNLFWQGGS*FGGCARFRLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFSNLQIGPK 755 RC N+ W GGS CA+ +Q +L* R + * + EIKRS+ *ALVLHCC KT E+DNHAV+CLFS+L+IG K Subject 7033 RC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQK 7278
Range 17: 6766 to 6981 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 34/72(47%) | 0/72(0%) | Minus/Plus |
Query 807 EVHQAILSWLCCKREDKHT**VSVC**HFRF*RAIL*PISKYQCSEGGSLHKVQDLQIW*EYMQVPSILWF* 1022 +VH A+ S +C RE +T**V V FRF* A+L PI K+Q S G+ H+V++L +W EY+Q+ +L F* Subject 6766 KVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF* 6981
Range 1: 5939 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.6 bits(617) | 0.0 | 115/167(69%) | 0/167(0%) | Minus/Plus |
Query 1247 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI 1747 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYEL+G ESI+FAGDDMCAN RLR+++ ++ FL I LKAKVQF PTFCGW L EG+FKKP L+ ER+ IA E NL+NCIDNYAIEVSYAY +GE + ++EEE++AHYNCVRF+V++ H ++CS+S LF +I Subject 5939 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELSGHESISFAGDDMCANRRLRVRSTYKSFLEKIRLKAKVQFTNFPTFCGWGLCPEGVFKKPDLVLERLQIAVETNNLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 2: 6482 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 81/196(41%) | 0/196(0%) | Minus/Plus |
Query 632 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFELDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLL 1219 V +M+ +V L + F + ++VH+VPGSGK++LIRE + + AF+ G PD PN+ GRYIK G G ILDEYLS + +GFD FSDP+QN AHF+ + RFG NT L S G++V S DE+I + F ++EG +IC K D + +++LPC+VRG+TF+VVT + Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Range 3: 7163 to 7381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 41/73(56%) | 0/73(0%) | Minus/Plus |
Query 325 MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFG 543 MP QP +++K+V PL IGL +G+V+ L +S LP++GDNIH PHGG Y DGTK I YCGP++SFP+ G+ G Subject 7163 MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG 7381
Range 4: 7446 to 7601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 14/52(27%) | 0/52(0%) | Minus/Plus |
Query 96 ILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVK 251 +++ V A + LI+ ++ C I TGES+ + NC S +K Subject 7446 VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLSPEFLEVLK 7601
Range 5: 7109 to 7150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Plus |
Query 551 YIAATRHRKKLIIM 592 YIA TRH KK+ I+ Subject 7109 YIALTRHSKKIQIL 7150
Range 6: 5938 to 6420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 83/161(52%) | 0/161(0%) | Plus/Minus |
Query 1266 EIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS 1748 E EH LT N TQL*CAS SSS +SP *A +TSIA*LSMQF RL +S A+ LS GFLK PS ++ PQ VG N T AL I R +L+LLFAH+SSPA + S P+SS + V +I A+VL + VLASPVNLI+AK+P+ Subject 5938 ETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRLFVSTAI*SLSSTKSGFLKTPSGHRPQPQKVGKFVNWTFALSLIFSRNDL*VDRTLSLLFAHMSSPAKLMLS*PLSS*RRNVKSILAMVLKRNVLASPVNLIIAKEPN 6420
Range 7: 7162 to 7380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 31/73(42%) | 0/73(0%) | Plus/Minus |
Query 326 PKSPELGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGI 544 PK+P +GK GPQ ++ LVPS * PP G * MLSP G ++ T P +P+ G T + GC +GI Subject 7162 PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI 7380
Range 8: 6883 to 7065 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 27/61(44%) | 0/61(0%) | Plus/Minus |
Query 636 KVTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNSNGEPVITSSSPSLRTLKPK 818 KVTTS V PRT QGSL S+ KS+ Q+ PS+S ++SSS +L TL P+ Subject 6883 KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR 7065
Range 9: 6598 to 6864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 35/89(39%) | 0/89(0%) | Plus/Minus |
Query 837 VFSPNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 1103 VF P L K*A + F* GSE S P +S +RYSSSM LP P M P+ G SG+P KA + +SLI+ Subject 6598 VFLPKRCELLPTK*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR 6864
Range 10: 5945 to 6322 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 43/126(34%) | 0/126(0%) | Plus/Minus |
Query 1364 LTQPVGIGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKR 1741 L V I +LNCII+NAI +V F SN L +Q+ F ++P Q P+T+ +L L+ + +E + P VC H+I + N + + + K+HI H VE+K T + HY KR Subject 5945 LPHGVSI*NLNCIIVNAILEVVCFNSNLKPLQHQIWFFENPLRTQAPATESWEIRKLDLCLEPDLFKERLVG*SDPKPPVCTHVITGEANAFMTTKLITKKRKEHISHGVEKKCASLTSEPHYCKR 6322
Range 11: 6362 to 6430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 12/23(52%) | 0/23(0%) | Plus/Minus |
Query 1256 KQSRN*ASHLVLISNQEPHTVVV 1324 K+ RN V + N EPHTVVV Subject 6362 KEIRNRTF*KVGVLNNEPHTVVV 6430
Range 12: 6228 to 6380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.1 bits(127) | 0.0 | 26/51(51%) | 0/51(0%) | Plus/Minus |
Query 1306 TAHSCSALQLLLHSSFQLTTHPTCRHRTPQLHNYQCNFPGYPFHEQCKFSP 1458 T+HSCS LLHSS T P +H PQLHN QCN G F +Q + SP Subject 6228 TSHSCSVHPFLLHSSTWKVTPPWSKHMKPQLHNCQCNSGGCLFQQQSEASP 6380
Range 13: 6177 to 6323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 23/49(47%) | 0/49(0%) | Minus/Plus |
Query 1363 VDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWVS 1509 V G C +G +N R F LL+K T +IAL IMQLR M T W S Subject 6177 VAGACVLRGFSKNQIWCWRGFRLLLKQTTSRIALTIMQLRFHMLTPWGS 6323
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6090 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 109/165(66%) | 0/165(0%) | Minus/Plus |
Query 1253 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 1747 LGSFAIMRFTGEASTFLFNTMANMLFTFLRY+L G E+I FAGDDMCANSRL++ FL+ I LKAKVQF PTFCGW L + G+FKKP L+ ER+ IARE NLENCIDNYAIEVS AY++GE + +EV+AHYNCVRF+V++ H ++ +I LF+ Subject 6090 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYDLNGREAICFAGDDMCANSRLKVTNRFSNFLDKIKLKAKVQFTATPTFCGWGLCEHGVFKKPDLVLERLQIARETRNLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK 6584
Range 2: 6702 to 7166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 64/155(41%) | 0/155(0%) | Minus/Plus |
Query 755 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFEL 1219 V IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + +GF+ LFSDPYQN AHFI + RFG T + L G+N+ S D V + F+L Subject 6702 VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL 7166
Range 3: 7378 to 7650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 44/91(48%) | 0/91(0%) | Minus/Plus |
Query 277 SEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTA 549 + MPF QP +++K+V P+ +G+ + +VL L +S LP GDNIH PHGG Y+DGTK I+YCGPR SFPSS L II+ ++ A Subject 7378 TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPRDSFPSSSLISSGTPMIIGIIIFLIFA 7650
Range 4: 7167 to 7301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 20/45(44%) | 0/45(0%) | Minus/Plus |
Query 623 LDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSR 757 ++ EGV+IC K D H ++K PC+VRGATFD+VT + + Subject 7167 IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK 7301
Range 5: 7676 to 7834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 17/53(32%) | 0/53(0%) | Minus/Plus |
Query 96 GILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVK 254 G+ V V ++L +S C I TGES+ + C SEA VK Subject 7676 GLAVAAAVVAYLVLLLAQQLYMSNSSQCTIVITGESVSVVGCVYSEAFIELVK 7834
Range 6: 6089 to 6547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 84/153(55%) | 0/153(0%) | Plus/Minus |
Query 1290 LFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS 1748 L T RTQL* ASTS + SP L A +TSIA*LS+QFS+ +S A+ LS+ GFL P ++ HPQ VG NCTLAL I+ RK ++L+L AH+SSPA I S P+ SYL+KV +IFAIVLNKKVLASPV IMAK PS Subject 6089 LCCTMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSKFLVSLAICNLSRTRSGFLNTPCSHRPHPQKVGVAVNCTLALSLILSRKFENLFVTLSLELAHMSSPAKHIASLPLRSYLRKVKSIFAIVLNKKVLASPVKRIMAKLPS 6547
Range 7: 6818 to 7141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 41/108(38%) | 0/108(0%) | Plus/Minus |
Query 780 TSSSPSLRTLKPKDRRYLHVFSPNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 1103 T SS L L P+ R V PN MK*A + F GSE P S D+YSS M LP P L+Y+P L SGTP V A L + + IK Subject 6818 TMSSLLLAIL*PRSLRI*TVCLPNRCEQRPMK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASILLFRIKACFIK 7141
Range 8: 7383 to 7586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 28/68(41%) | 0/68(0%) | Plus/Minus |
Query 341 LGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGI 544 LGK+ LGPQ ++L VPS * PP G +LSP GK + ST P G T+ G KG+ Subject 7383 LGKESLGPQ*LILFVPS**LPP*GKL*ILSPTCGKVLLVNVNSTTATAMPTAIGNTLFE*SGG*AKGM 7586
Range 9: 7163 to 7285 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 22/41(54%) | 0/41(0%) | Plus/Minus |
Query 639 VTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNS 761 VT S VAPRT QG+L S C KS+ +QI TPS S S Subject 7163 VTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS 7285
Range 10: 6099 to 6236 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 22/46(48%) | 0/46(0%) | Plus/Minus |
Query 1601 VCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGK 1738 V AH+I RK P + +P +G++HICHC+EQ+G FT ++H GK Subject 6099 VSAHVITRKAYRFPPIEIIPEKGEKHICHCIEQEGACFTCEAHNGK 6236
Range 11: 6270 to 6449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 26/60(43%) | 0/60(0%) | Plus/Minus |
Query 1388 HLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQE 1567 + N I+IN IFQV F+SN SL +++RF + F Q PST+ EL+ S K N I++ Subject 6270 NFNSIVINTIFQVPCFSSNLQSLQDKIRFFEYTMFTQAPSTESWRSSELHLSFKLNFIKK 6449
Range 12: 7384 to 7581 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 23/66(35%) | 0/66(0%) | Plus/Minus |
Query 346 ERLSGTTICYAFGAVPITSSMWKLMYVVP*VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRH 543 +R+ G I Y V I +S+ +M ++ +WQ S* QH N AY + I RL KRH Subject 7384 KRIPGAAIAYPLCTVLIITSVR*IMNIIAHLWQGTSS*CKQHNCNCNAYSNWKYAL*VIWRLSKRH 7581
Range 13: 6780 to 6911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 12/44(27%) | 0/44(0%) | Plus/Minus |
Query 1010 LDVPPRKIGSVGNSGCEGCETLVLSDELSYQTTFTATRNTMNDN 1141 LD+ +G + +S + ++ + L YQ+ F+ TRN M+++ Subject 6780 LDICSVDVGLLRDSKSDSFNIIISNQGLLYQSGFSRTRNCMHND 6911
Range 14: 6957 to 7091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 14/45(31%) | 0/45(0%) | Plus/Minus |
Query 830 LACILTKSAGLGLYEVSLPRNTDILIWVRE*HVKTGNVINRQILI 964 L + KS YE+S IL+ VRE V+ ++ RQ+ + Subject 6957 LNSLSAKSV*AATYEMSP*AIPVILVRVREKTVEPCRILTRQVFV 7091
Range 15: 6118 to 6471 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 45/118(38%) | 0/118(0%) | Minus/Plus |
Query 1366 RVKPVPFCSTQWQICCLPS*GTN*QGPSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWV 1719 +VK P CS QWQIC P G G + LR M CA T + ++ I +L+L+ NS VDG C +NL R+ LL K TWKI LI M L+ T WV Subject 6118 QVKQAPSCSIQWQICFSPFSGMISMGGKRYALRVMTCALTLGSRSQTGSQIFLIKLSLKLRCNSLLRQLSVDGACVNMVYSKNLILSWRDCKLLEKQGTWKIVLITMLLKFLAHTRWV 6471
Range 1: 6094 to 6585 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.5 bits(560) | 0.0 | 105/164(64%) | 0/164(0%) | Minus/Plus |
Query 1256 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 1747 LG+FAIMRFTGEASTFLFNTMAN+LFTFLRY+L G E+I FAGDDMCANSRL++ ++ FL+ I LKAKVQF PTFCGW L + G+FKKP L+ ER+ IARE NLENCIDNYAIEVS AY++GE ++ E++AHYNCVRF++ + H ++ +I LF Subject 6094 LGNFAIMRFTGEASTFLFNTMANILFTFLRYDLNGKEAICFAGDDMCANSRLKITNKNSKFLDKIKLKAKVQFTVTPTFCGWGLCEHGVFKKPDLVLERLQIARETRNLENCIDNYAIEVSCAYQMGENLNLYLSPHEMDAHYNCVRFIILHNHLLKSNIKDLF 6585
Range 2: 6665 to 7129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 64/155(41%) | 0/155(0%) | Minus/Plus |
Query 755 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFEL 1219 V+IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + +GF+ LFSDPYQN AHFI + RFG T + L + G+N+ S D V + F L Subject 6665 VLIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL 7129
Range 3: 7347 to 7601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 43/85(51%) | 0/85(0%) | Minus/Plus |
Query 289 MPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVI 543 MPF QP +++K+V P+ IG + LVL L +S LP GDNIH PHGG Y+DGTK I+YCGP+ SFPSS L ++I++ Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSLISSGTPMIIIVILL 7601
Range 4: 7130 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 21/45(47%) | 0/45(0%) | Minus/Plus |
Query 623 LDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSR 757 ++ EG +IC KE D H ++KLPC+VRGATFD VT + + Subject 7130 VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 5: 7581 to 7631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 11/17(65%) | 0/17(0%) | Minus/Plus |
Query 253 LIIVIVLTASIYVLSVW 303 +IIVI+LTA+IYV W Subject 7581 IIIVILLTAAIYVSERW 7631
Range 6: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 8/15(53%) | 0/15(0%) | Minus/Plus |
Query 551 FYIAATRHRKKLIIM 595 +Y+A TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 7: 6093 to 6476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 72/128(56%) | 0/128(0%) | Plus/Minus |
Query 1365 SPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS 1748 SP *A +TSIA*LSMQFSR +S A+ LS+ GFLK P PQNVG N TLA I+ + ++ +L FAH+SSPA I S P+ SYLKKVN+I A+VLN+KVLASPVN IMAK PS Subject 6093 SPIW*AQETSIA*LSMQFSRFRVSLAI*SLSRTKSGFLKTPCSQSPQPQNVGVTVNWTLAFSLILSKNLEFLLVIFSLEFAHMSSPAKQIASFPLRSYLKKVNSILAMVLNRKVLASPVNRIMAKLPS 6476
Range 8: 7334 to 7549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 33/72(46%) | 0/72(0%) | Plus/Minus |
Query 341 LGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHD 556 LGK+ LGPQ ++LLVPS * PP G MLSP GK ++ T+ PI G T+L G KGI + D Subject 7334 LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILIRD 7549
Range 9: 7126 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 29/67(43%) | 0/67(0%) | Plus/Minus |
Query 561 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSESCATAKSTASLPKQIRTPSTSNS 761 N LCLV+A ++ + KVT S VAPRT QG+L S C KS+ S +QI PS S S Subject 7126 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS 7326
Range 10: 6781 to 6975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 27/65(42%) | 0/65(0%) | Plus/Minus |
Query 909 GSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 1103 GSEN KP S DRYSS M LP P L+ +P SGTP V A L + + IK Subject 6781 GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTASILWFLIKACFIK 6975
Range 11: 6274 to 6555 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 37/94(39%) | 0/94(0%) | Plus/Minus |
Query 1286 VLISNQEPHTVVVRXXXXXXXXXXXQLTQPVGIGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQE 1567 V++ N EPHTVV+ + T VG G+ N IIINAIF+V N S NQ+R K+P ++P+T+C EL F L+ N +Q+ Subject 6274 VIVQNDEPHTVVMSIHLMRGEVEIQIFTHLVGTGNFNSIIINAIFKVPGLPRNLKSFKNQIRLFKNPMLAKSPTTECWSYSELDFGLQFNLVQK 6555
Range 12: 6094 to 6240 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 21/49(43%) | 0/49(0%) | Plus/Minus |
Query 1601 VCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKRPK 1747 VC H+I + N L + +P +G+ +I H +E K GFT +SHYGK K Subject 6094 VCTHVITSETNCLLSVKVIPQKGE*YISHGIE*KSAGFTSESHYGKITK 6240
Range 13: 6296 to 6475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 25/60(42%) | 0/60(0%) | Minus/Plus |
Query 1366 RLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIMQLRCPMPTGWV 1545 R K +S H V G + G L++ F ++F L + T KIALIIM L+ P+PT WV Subject 6296 RPKSSSL*LQHSVVGDFASMGFLKSRIWFLKDFKLRGRPGTLKIALIIMLLKFPVPTRWV 6475
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 5573 to 6064 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.7 bits(602) | 0.0 | 108/164(66%) | 0/164(0%) | Minus/Plus |
Query 1256 LGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 1747 LG+F+IMRFTGEASTFLFNTMANMLFTFLRYEL GSE+I FAGDDMC+N RLR+ +HEGFL+ + LKAKVQF PTFCGW L +GIFK+PQL+ ER+C+ARE NL NC+D+YAIEV YA+ LGE ++ M+EE ++ HYNCVRF+V++ H ++ S+ LF Subject 5573 LGNFSIMRFTGEASTFLFNTMANMLFTFLRYELNGSEAICFAGDDMCSNRRLRVSNKHEGFLSKLRLKAKVQFTVKPTFCGWNLCLDGIFKRPQLVLERLCVAREKDNLANCLDSYAIEVGYAFALGEKVLQYMDEEAMQNHYNCVRFIVKHSHLLKSSVRDLF 6064
Range 2: 6840 to 7091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 41/84(49%) | 0/84(0%) | Minus/Plus |
Query 277 PANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTA 528 P + + + P+ IGLG+G+V+ L +S LP GDNIH PHGG Y DGTK I+YCGP+ SFPSS LF A ++V+++ A Subject 6840 PPDNTRVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLPHGGNYLDGTKRISYCGPKNSFPSSNLFKGGAFSAICVVVLLVFA 7091
Range 3: 6365 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 44/119(37%) | 0/119(0%) | Minus/Plus |
Query 620 INILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNVRSDGLDEVITGSPFELDVEGVLICFGKEAVDLAVAHDSDFKLPCEVRGATFDVVTLLKSRD 976 + I+DEY+ D G F+DP Q +AHF +T RFG+ TC L S D++I F D+EG ++C+ KE DL H +D+K C++RG+TFD+VT + + D Subject 6365 LKIIDEYIGQDLPEGTTFCFADPNQFPYTCPDAHFTCYQTKRFGDQTCALLGKIDCAAFSYKQDQIIFDKLFAGDIEGQIVCYEKEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD 6721
Range 4: 6122 to 6337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 32/72(44%) | 0/72(0%) | Minus/Plus |
Query 1001 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYS 1216 ++M+ + L ++ + FP++VH V G+GKS+LIRE+I D F AFT GVPD NLSG IK S Subject 6122 LVMDFVYDKLIDAGYIRTRLPISFPIIVHCVAGAGKSTLIREIIEVDHKFEAFTYGVPDPINLSGVRIKSNS 6337
Range 5: 7111 to 7257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 16/49(33%) | 0/49(0%) | Minus/Plus |
Query 96 LVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVK 242 L+G + A + + + N +GCLI +GES++I+NC + + VK Subject 7111 LIGLIAALVAVVLLHMLNSGQEGCLIIISGESVVIKNCVYTSEFINLVK 7257
Range 6: 5572 to 6033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.5 bits(368) | 0.0 | 88/154(57%) | 0/154(0%) | Plus/Minus |
Query 1287 CLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPS 1748 C LT N TQL* +SS I SP A* TSIA* S Q +RL S A Q LS+ + G LKIPS ++ HPQNVG N TLA + R PSC +L+L F HISSPA + S+P+SSYLKKVNN+FAIVLNKKVLASPVNL++ K PS Subject 5572 CECLTMNLTQL*WFCMASSSIYCKTFSPKAKA*PTSIA*ESRQLARLSFSLATQSLSKTSWGRLKIPSRHRFHPQNVGLTVNWTLAFNLSLLRNPSCLFDTLSLRFEHISSPAKHMASEPLSSYLKKVNNMFAIVLNKKVLASPVNLMIEKFPS 6033
Range 7: 6839 to 7027 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 28/63(44%) | 0/63(0%) | Plus/Minus |
Query 341 LGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAG 529 LGK GPQ ++L VPS * PPCG +LSP G D +R T P P+P+ G L G Subject 6839 LGKLFFGPQ*LILFVPSK*FPPCGKLWILSPT*GNVDLVRHQITTPTPRPMAIGNKTLVLSGG 7027
Range 8: 6235 to 6327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 19/31(61%) | 0/31(0%) | Plus/Minus |
Query 1011 LMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 1103 L+ PERL SGTP VKA L S+ M SLIK Subject 6235 LILTPERLIGSGTP*VKASNLWSTSMISLIK 6327
Range 9: 5573 to 5938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 42/122(34%) | 0/122(0%) | Plus/Minus |
Query 1382 IGHLNCIIINAIFQVTHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKRPK 1747 + +L I + + QV + N N+L ++ Q PSTKC + +L F L+ Q+ M P S V AHII + L +FV E +QH+CH VEQ+ T +SH K PK Subject 5573 VTNLYSIGVKTVSQVVFLSCNTEPFQNKLGAFENSIKAQIPSTKCWLNCKLDFGLQPKFAQKPLMFI*HPQSPVRAHIITSEAYGL*TIEFVSQESEQHVCHRVEQESACLTSESHD*KIPK 5938
Range 10: 6197 to 6337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 16/47(34%) | 0/47(0%) | Plus/Minus |
Query 1001 RVWLDVPPRKIGSVGNSGCEGCETLVLSDELSYQTTFTATRNTMNDN 1141 RV L+ PR+I V N+ EG + +V ++ + F++ NT+N+N Subject 6197 RVALNSYPREINRVRNTVSEGLKLVVNLNDFPD*SAFSSAGNTVNNN 6337
Range 11: 5703 to 5921 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 26/73(36%) | 0/73(0%) | Minus/Plus |
Query 1399 MICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLN*FGREFALLVKWVTWKIALIIM 1617 MICA+T D*G +++M+ * R K N + HFVDG+C+ N F + L + TW L M Subject 5703 MICARTGD*GCQINMRGF*ANLG*RPKSNLQLSQHFVDGICALMEFSNAPNLFWKGSVLQERKTTWLTVLTPM 5921
Range 12: 6896 to 7021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 15/42(36%) | 0/42(0%) | Minus/Plus |
Query 347 GAAFPKKVKFAILRGQHTSISTWRTL*GRHQKHNILWSQTVF 472 G KV A R Q+ +TW L GR +K+ +LW++ F Subject 6896 GYLVSNKVYIASSRRQYPQFATWWELFGRDKKNQLLWAKEQF 7021
Range 13: 5622 to 5669 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Plus |
Query 1651 CSTQWQICCLPS*GTN 1698 CST+WQ CC S* TN Subject 5622 CSTRWQTCCSLS*DTN 5669
Range 14: 5572 to 5817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 30/82(37%) | 0/82(0%) | Minus/Plus |
Query 1503 AWVFCHNEIYG*SQYLFVQHNGKYVVYLLKVRTDRVRVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWM 1748 AW F ++EI+ * ++ VQH+GK+VV+ L++RT R + + *YV + + + * * E G S I ILWM Subject 5572 AWEFFNHEIHW*GKHFLVQHDGKHVVHFLEIRTQWFRGHMLRW**YVLEPETEGVK*T*GVSEQT*VEGQSPIYS*ANILWM 5817
Nucleotide Sequence (426 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
155.0 | 826.9 | 29% | 6.004e-55 | 42% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7864 to 8097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 67/78(86%) | 0/78(0%) | Minus/Plus |
Query 1 PEVSNQPPILSGILAKRKRVIENALSKTVDMREVLRHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIAQ 234 PE SN PP LSGILAKRKR+IENALSKTVDMREVL+HE+VV+SPNVMDEGAIDELIRAFGESGI+ES QF+VAIDIA+ Subject 7864 PEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIAR 8097
Range 2: 7672 to 7809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 36/46(78%) | 0/46(0%) | Minus/Plus |
Query 289 ALASTEKEV*GGLKALGASQKVDEIDYSC*KS*MASQVGKLPGESN 426 ALAST KEV GGLKALG S+ V+EIDY C* *MASQ+GKLPGESN Subject 7672 ALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESN 7809
Range 3: 7672 to 8094 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 69/141(49%) | 0/141(0%) | Plus/Minus |
Query 4 CNIYCNVKLITL*YARLSKSTNQLIYCSLIHYIWGEYNRFMP*NFTHIHCLRECILNNSFPFGKNATKNGRLVGNFRSFLSPC*L*SLKPGFICFIRLARQLSDLTCHLTLSTTVINFINXXXXXXXXXXXXHFLLSGCKG 426 C IY ++KL YAR +K TNQL+YC+ IH IWG ++RF+ N H+H L +CIL N FGKNAT++ + FR LS *L PGF I + +LTCH T +INF N A+P*SLQ S H L SGCKG Subject 7672 CYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATESRWCIRTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKG 8094
Range 4: 7863 to 8093 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 59/77(77%) | 0/77(0%) | Plus/Minus |
Query 5 AISIATLN*SLSDMPDXXXXXXXXXXXXXXXTFGESTTDSCLKTSRISTVFESAFSITLFLLARMPLRMGGWLETSG 235 AIS+AT N +LS MPDSP ARISSSIAPSS+TFGE TT SC KTS +STVFESAFSI L LARMPLR+GG LE SG Subject 7863 AISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSG 8093
Range 5: 7674 to 7805 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 31/44(70%) | 0/44(0%) | Plus/Minus |
Query 293 DSPGNFPT*LAI*LFQQL*SISSTFWLAPKAFNPPYTSFSVDAR 424 DSPG+FP *LAI Q *SISST L PKAF PP TSF+VDAR Subject 7674 DSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDAR 7805
Range 6: 7674 to 8096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 67/141(48%) | 0/141(0%) | Minus/Plus |
Query 2 PCIH*EGSVGRVEGFRG*PKG**N*LQLLKELNGKSSRKVAWRV**SI*SQA*GFRVSKGSKSSGSFQPASHS*WHSCQKEKSY*ECTLEDSGYA*SFKA*ICCTLPKCNG*GSNR*ADSCFWRVGHIRE*SI*RCNRYCT 424 PCIH EG GR EGFRG*P * N*L LL LNGKS+ + + * *S A VS SK++G F ++S WHSCQ ++ Y ECT +D G+ F+ PKC+G* NR ADSC W + H + +I* +RY T Subject 7674 PCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFETRNGGDFPKCHG*RCNRRADSCIW*IWHS*KRAI*CGHRYST 8096
Range 7: 7673 to 8095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 65/141(46%) | 0/141(0%) | Minus/Plus |
Query 3 PLHPLRRKCREG*RL*GLAKRLMKLITVVERVKWQVKSESCLASLMKHMKPGLRL*S*QGLKKLRKFPTSLPFLVAFLPKGKELLRMHSRRQWICVKF*GMNLLYSPQM*WMREQ*MS*FVLLESRAYQRVINLTLQ*ILH 425 PLHPL R+C E *RL*GLA L KLI +V+ +WQVK + + M+ +KPG S* LK RK VAFLP + L RMH +R+W +F* PQM WM+ Q* S*FV L + A + NL *I H Subject 7673 PLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVLMHHLLSVAFLPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*H 8095
Range 8: 7727 to 8095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 52/123(42%) | 0/123(0%) | Plus/Minus |
Query 3 VQYLLQR*IDHSLICPTLQKHESAXXXXXXXXXXGRVQQIHALKLHAYPLSSRVHSQ*LFSFWQECH*EWEAGWKLPELFEPLLTLKP*AWLHMLH*TRQATFRLDLPFNSFNNCNQFHQPFG 371 V YL I +C Q HESA LL HP HLG+ K + P S +VHS * WQECH*E LP FE LT A L H + + DLPF+ FNN NQF Q G Subject 7727 VLYLWPHQIARFQLCQIHQMHESARLLHLHP*HLGKSPPFRVSKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG 8095
Nucleotide Sequence (714 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
424.5 | 1664.7 | 32% | 5.321e-127 | 48% | NC_001948 | |
305.3 | 658.9 | 24% | 1.986e-87 | 34% | NC_003462 | |
300.3 | 882.3 | 40% | 6.398e-86 | 30% | NC_009892 | |
295.2 | 625.0 | 29% | 2.081e-84 | 26% | NC_014821 | |
291.1 | 538.7 | 33% | 2.082e-84 | 53% | NC_012038 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5189 to 5761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
424.5 bits(920) | 0.0 | 183/191(96%) | 0/191(0%) | Plus/Plus |
Query 142 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL 714 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYE TQQFFDEHRGG GEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN MFHEAVQEFEAKKASKSAATIENH+GRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL 5761
Range 2: 5081 to 5137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 19/19(100%) | 0/19(0%) | Plus/Plus |
Query 34 REEKLCGDPWLKVMLFLGQ 90 REEKLCGDPWLKVMLFLGQ Subject 5081 REEKLCGDPWLKVMLFLGQ 5137
Range 3: 5188 to 5760 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
321.4 bits(695) | 0.0 | 149/191(78%) | 0/191(0%) | Minus/Minus |
Query 141 KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTAS*NILTLWLAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLNH 713 +TAC KQA+VCPALATL+LLSN VQC DF+KI+ATS++QS HDLP *FS+VAALLLAFFASNSCTAS*N++ L LAFNG DRK S++NFP G ARLS AAST GFEN +RFRTA++KV+ES PLCLG*MLS S ALL+CSP+PPLCSSKNC*V+S P RTSRYSFKAI PTHLALVDSRLLKGM VLNH Subject 5188 RTACWKQARVCPALATLSLLSNLVQCCDFIKIRATSNNQSLHDLPA*FSIVAALLLAFFASNSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH 5760
Range 4: 5083 to 5133 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 14/17(82%) | 0/17(0%) | Minus/Minus |
Query 36 PKKSITFSHGSPHSFSS 86 P+KSITF+HGSPH+FSS Subject 5083 PRKSITFNHGSPHNFSS 5133
Range 5: 5084 to 5761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.8 bits(482) | 0.0 | 120/226(53%) | 0/226(0%) | Minus/Minus |
Query 37 QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCSTFASXXXXXXXXXXXXHTDIVASIQWDF**ESVEQEFSVRLCTP*LRSFHLWL*KLQAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEPFFI*TLRLELFNFTVFILA*EKHNF*PRITTQLFL 714 QNS+L+A + LPS S+ +VKF T+L H+NQSNI* PIP *P +I C T SLL LKLL+ MKH I+ QWDF *E + EF + P SF+L L K + SD H++ +I+ M +NA K LT IAQLLT + P+ I+ELLS I T +L ILFQ HF +P PG*LQI QG V F+PFFI* L LFNFT+ IL EKHNF*P +TT L L Subject 5084 QNSMLEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLL 5761
Range 6: 5086 to 5757 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.0 bits(428) | 0.0 | 111/224(50%) | 0/224(0%) | Plus/Plus |
Query 39 GKAVW*SVAKSYAFLRPG*RL*S*RARV*VFK*RMVQNTHTLEQSGVNQG*MGWENGFERVS*GTVWV*DNSAILR*TQGGHG*AIEQCL*AF*EHLS*T*G**LHHFFDGRPKTLEVFKATGGSCEAKACKALRKIPARHFPIKSPIEC*PQCQYVS*GSAGV*GKEG*QKCCNH*KSLRQVMSGLAARCCFDFHEIPTLYKI*Q*IKGG*GWANFGLLSTRC 710 G+ +W* + KSYAF * L*S*R V + K*RMV N H LE SGVNQG +G NG ERVS G +W+*++S IL * G + *A EQC+* *+HL * * ++ G PK ++F+A G SC+ +A + + +I R FPI++PIE +VS* GV*G+EG* +C N+ +S R VM GL RCC DF+E+ TLY I*Q * WAN LL T C Subject 5086 GEVMW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLPTCC 5757
Range 7: 5085 to 5531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.9 bits(323) | 0.0 | 72/149(48%) | 0/149(0%) | Minus/Minus |
Query 38 SMGLLIGKCRAGIFRKALHALASQLPPVALKTSSVFGRPSKK*WSHYPYV*DKCSQNAHKHCSIAHPCPPCVHRRIAELSHTHTVPHDTLSKPFSQPI*PWLTPDCSRVCVF*TILHLNTQTRALQLHSLHPGLRKA*LLATDHHTAFP 484 SMG IGK I A QL P A K FG+P + +H+ Y KC Q +H HCS+AH P H+RI E H H P DTLS+PF P PWLTPD SR C F*TILHL+ T +LQLH+ H KA*LL HH P Subject 5085 SMGFWIGKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSP 5531
Range 8: 5553 to 5759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 37/69(54%) | 0/69(0%) | Minus/Minus |
Query 506 KQRVESRPKFAQP*PPLIYCQILYNVGIS*KSKQHLAANPDMTCLSDFQWLQHFC*PSLPQTPALPHET 712 +Q V S+ FAQ * CQI Y+V S*KS+QHL NP MT L D L H *PS PQTP HET Subject 5553 EQHVGSKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLITNPCMTYLHDSL*LLHSY*PSSPQTPVPLHET 5759
Range 9: 5085 to 5759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 117/225(52%) | 0/225(0%) | Plus/Plus |
Query 38 RKSCVVIRG*KLCFS*ARMKTXXXXXXXXXXQMKNGSKHTYP*AIWSQPGLDGLGKWL*KSIVRYGVGMRQLSNSSMNTGGAWVSN*AMLVSVLRAFILDIRVMTPSLF*WPSENA*SFQSHRWKLRS*GVQSLTENSCSTLSYQKSH*MLATMSVCFMRQCRSLRQRRLAKVLQPLKITQAGHVGIGC*MLL*FS*NPNIVQNLTID*GWLRLGKLWPAFNTLF 712 R+S VV G*KLCFS +M+ VKLK S + QMKNG K T P* IWSQPG G KW *KSI R V M+ L+NS M+ G VSN*AM V L+AF I+ M W SE+ +F+S R KL +*G + NS LSY KSH* + CFM++ RSLR+RRL +V Q +I Q GH GIG *MLL*F *+ N V NLT L+LGK A N LF Subject 5085 RRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*KPVIIPSCFMKRYRSLRRRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTVLNLTTGLE*LKLGKPLLASNMLF 5759
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5238 to 5810 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.3 bits(660) | 0.0 | 131/191(69%) | 0/191(0%) | Plus/Plus |
Query 142 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL 714 WFKTHIP+ +LE+ RA+WV K+ +E RE R G TT+QF D+H G++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VPLN+SH+ M EAV FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL Subject 5238 WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVL 5810
Range 2: 5130 to 5186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 14/19(74%) | 0/19(0%) | Plus/Plus |
Query 34 REEKLCGDPWLKVMLFLGQ 90 RE KL GDPWLK +FLGQ Subject 5130 REAKLVGDPWLKTKIFLGQ 5186
Range 3: 5240 to 5809 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 108/190(57%) | 0/190(0%) | Minus/Minus |
Query 144 KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTAS*NILTLWLAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLN 713 +T C*KQA+VCPALA LNLLSN VQ WDFMK+ A S+ QS DLPE*FS+VA L FF+S + TAS I + L F GT RKVSSRN P G A SFA S G E F TAI+ V S+PLCLG + S RS AL+N P L SS NC VV P R S S + TH AL SRL+ GMCVLN Subject 5240 RTEC*KQARVCPALALLNLLSNLVQSWDFMKMSALSTGQSSQDLPE*FSIVAILFDNFFSSKA*TASCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVNS*PRFLL*SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN 5809
Range 4: 5132 to 5182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 9/17(53%) | 0/17(0%) | Minus/Minus |
Query 36 PKKSITFSHGSPHSFSS 86 P+K + F+HGSP S +S Subject 5132 PRKILVFNHGSPTSLAS 5182
Range 5: 5646 to 5810 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 25/55(45%) | 0/55(0%) | Minus/Minus |
Query 550 QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCSTF 714 +N +LKA +SL S P +VKF LG HE++ I PI T P+ VI N TF Subject 5646 KN*MLKASKSLSSFGTPEPVVKFGAKLGLHEDECFIHWPIFTRPSRVILNCGHTF 5810
Range 6: 5238 to 5483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/82(34%) | 0/82(0%) | Minus/Minus |
Query 142 QAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEP 387 Q+ + H+K + LM + + L+ I+ LLT V I ELLSC + L IL ++ F NP S L+ V EP Subject 5238 QSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEP 5483
Range 1: 5087 to 5659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
300.3 bits(649) | 0.0 | 129/191(68%) | 0/191(0%) | Plus/Plus |
Query 142 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL 714 WFKTHIP+ LE+ RARWV K+ KE RE R G+E T+QF DEH G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +PL H+ + +AV +FE KK SKSAATIENHSGRS RDW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL Subject 5087 WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVL 5659
Range 2: 4979 to 5035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 14/19(74%) | 0/19(0%) | Plus/Plus |
Query 34 REEKLCGDPWLKVMLFLGQ 90 RE KL GDPWLK +FLGQ Subject 4979 REPKLSGDPWLKTAIFLGQ 5035
Range 3: 5089 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 59/112(53%) | 0/112(0%) | Minus/Minus |
Query 144 GTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLN 479 G + RKV RN P G A L+ A S G+E F TAI+ V ES+PLCLG*++S S AL+ C P LCSS NC V S P S SF +I THLAL SR GMCVLN Subject 5089 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN 5424
Range 4: 5461 to 5658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 46/66(70%) | 0/66(0%) | Minus/Minus |
Query 516 KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTA 713 KT C*KQAKVCPA A N LSN VQ WDFMKI A S+ QS + PE FSMVAALLL+FF+S S TA Subject 5461 KTEC*KQAKVCPAFALRNRLSNLVQSWDFMKISALSTGQSLLERPEWFSMVAALLLSFFSSKSLTA 5658
Range 5: 4994 to 5413 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 42/140(30%) | 0/140(0%) | Minus/Minus |
Query 49 *ESVEQEFSVRLCTP*LRSFHLWL*KLQAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEPFFI*TLRLELFNFTVFILA*EKHNF*PRITT 468 *E +++EF+ +P* +F+ WL + + F + H + D V LM RIN+ + + L +F+++LLS L+ P L+ +F +P P L+ V FEP F+ V++L + +F P ITT Subject 4994 *EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT 5413
Range 6: 5492 to 5659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 29/56(52%) | 0/56(0%) | Minus/Minus |
Query 547 QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCSTFA 714 Q+ VLK Q LPSL IVK LGFHEN + PIP *++FNGCST A Subject 5492 QDRVLKTSQGLPSLCTSKPIVKLSAELGFHEN*CFVDWPIPARTP*MVFNGCSTLA 5659
Range 7: 5494 to 5655 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 29/54(54%) | 0/54(0%) | Plus/Plus |
Query 549 QKCCNH*KSLRQVMSGLAARCCFDFHEIPTLYKI*Q*IKGG*GWANFGLLSTRC 710 Q+CCNH*K R GLA+R +FHEIPTL+ +*Q + GWAN GL S C Subject 5494 QECCNH*KPFRAF*QGLASRQSTNFHEIPTLH*V*QSVSKCKGWANLGLFSALC 5655
Range 8: 5082 to 5216 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 17/45(38%) | 0/45(0%) | Plus/Plus |
Query 137 KNGSKHTYP*AIWSQPGLDGLGKWL*KSIVRYGVGMRQLSNSSMN 271 K GSK T+ + G G K+L + + G+ MR LSN S N Subject 5082 KIGSKRTFQFFLLRLLGQGGCIKYLQRKLESLGLVMR*LSNLSTN 5216
Range 9: 5475 to 5654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 31/60(52%) | 0/60(0%) | Plus/Plus |
Query 530 LRQRRLAKVLQPLKITQAGHVGIGC*MLL*FS*NPNIVQNLTID*GWLRLGKLWPAFNTL 709 L++R A+VLQPLK Q GIG *FS*NPN +LTI RLGK W F+TL Subject 5475 LKRRNSARVLQPLKTIQGVLAGIGQSTKH*FS*NPNSALSLTIGFEVQRLGKPWLVFSTL 5654
Range 1: 5242 to 5814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
295.2 bits(638) | 0.0 | 127/191(66%) | 0/191(0%) | Plus/Plus |
Query 142 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL 714 WFKTH+P+ LE+ RA+WV ++ KE RE R G TT+QF DEH G +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VPL+ H+ M AV FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL Subject 5242 WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAVHAFEEKKLSKSMATIENHSGRSCEDWPIDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVL 5814
Range 2: 5134 to 5190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 14/19(74%) | 0/19(0%) | Plus/Plus |
Query 34 REEKLCGDPWLKVMLFLGQ 90 RE KL GDPWLK +FLGQ Subject 5134 REAKLVGDPWLKTKIFLGQ 5190
Range 3: 5244 to 5813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 103/190(54%) | 0/190(0%) | Minus/Minus |
Query 144 KTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCTAS*NILTLWLAFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLN 713 KT C*KQAKVCPALA NLLSNFV DFM IKA S QS + PE FS+VA L +FF+S + TA+ I L L GT +KVS RNFP G A L+ A S G E F TAIK V S+PLCLG*M S S AL++ SP+ LCSS NC VV P R SR S + TH AL S + G VLN Subject 5244 KTEC*KQAKVCPALALRNLLSNFVHN*DFMNIKALSIGQSSQERPEWFSIVAILFESFFSSKA*TANSIISLLCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN 5813
Range 4: 5124 to 5189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/22(50%) | 0/22(0%) | Minus/Minus |
Query 24 WPKKSITFSHGSPHSFSSRHTS 89 WP+K + F+ GSP S +SR S Subject 5124 WPRKILVFNQGSPTSLASRTPS 5189
Range 5: 5125 to 5589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 40/155(26%) | 0/155(0%) | Minus/Minus |
Query 25 SIQWDF**ESVEQEFSVRLCTP*LRSFHLWL*KLQAFSDGHQKSDGVITLMSRINALKTLTSIAQLLTHAPPVFIEELLSCLIPTPYLTILFQSHFPNPSSPG*LQIAQGYVCFEPFFI*TLRLELFNFTVFILA*EKHNF*PRITTQLFLSSHL 489 +IQ D + ++++FS P F W + F H + G+ +LMS +N + + + VFI EL +P +IL +P SP L+ ++ EP ++ F V+ LA E + *P I+ LS+ L Subject 5125 AIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGISN*FSLSNAL 5589
Range 6: 5653 to 5814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 22/54(41%) | 0/54(0%) | Minus/Minus |
Query 553 QNSVLKAGQSLPSLSHP*SIVKFCTMLGFHENQSNI*QPIPT*PA*VIFNGCST 714 Q+ +LKA SL L S+VKF L HE QS I PI T ++ N T Subject 5653 QDRMLKAS*SLSGLGTSESVVKFRAQLRLHEYQSFIDWPILTGTTRMVLNSGHT 5814
Range 1: 4568 to 5140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.1 bits(629) | 0.0 | 126/191(66%) | 0/191(0%) | Plus/Plus |
Query 142 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVSMFHEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVL 714 WFKTH+PL +ES RA WV KE REVR GY + QF DEH G+ L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL A+ YGK+LLD FL VPL A HN +V++FE KK SKSAATIENHSGRSCRDWL DV LIFMKSQ CTKFDNR RVAKA Q++ CFQH+VL Subject 4568 WFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQHSVL 5140
Range 2: 4460 to 4516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 15/19(79%) | 0/19(0%) | Plus/Plus |
Query 34 REEKLCGDPWLKVMLFLGQ 90 RE+KL GDPWLK M+FLGQ Subject 4460 REDKLAGDPWLKTMVFLGQ 4516
Range 3: 4567 to 4914 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 61/116(53%) | 0/116(0%) | Minus/Minus |
Query 141 AFNGTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPMPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLNH 488 AFNGT +K+SSR FP* A S A ST G EN KRF TAI+KV SL LCLG*M SKRS A ++ P+ CSS N + P RTS +SF F T A S +G VLNH Subject 4567 AFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH 4914
Range 4: 4945 to 5136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 40/64(62%) | 0/64(0%) | Minus/Minus |
Query 519 TAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*FSMVXXXXXXXXASNSCT 710 T C KQ C ALAT NLLSN VQ WDF+ I TS+SQS + PE FS+VAALLL FF+S S T Subject 4945 TECWKQTIDCAALATRNLLSNLVQIWDFINISPTSASQSLQERPEWFSIVAALLLVFFSSKSLT 5136
Nucleotide Sequence (1006 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
358.9 | 1555.1 | 36% | 4.315e-98 | 32% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7582 to 8118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
358.9 bits(777) | 0.0 | 157/179(88%) | 0/179(0%) | Minus/Plus |
Query 223 HVDSNDGDHQGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HC*MASPPGKLPGESNEAFEARLKSLELARAQKQPTGSNQPPTLGGVLAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIARHCSVVGS 759 HVDS+ G+HQGC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS EEIDYHC* *MAS GKLPGESNEAFEARLKSLELARAQKQP GSN PPTL G+LAKRKR+IENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI+ES QF+VAIDIARHCS VGS Subject 7582 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGS 8118
Range 2: 7770 to 8120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.3 bits(409) | 0.0 | 89/117(76%) | 0/117(0%) | Plus/Minus |
Query 221 KLPTTEQWRAISIATLN*SLSDMPDSPNARINSSIAPSSMTFGDSTTDSCFNTSRMSTVFERAFSITLFLLARTPPRVGGWLEPVGCF*ALASSKDFSLASKASFDSPGNFPGGLAI 571 +LPT+EQ RAIS+AT N +LS MPDSPNARI+SSIAPSSMTFG+ TT SCF TS MSTVFE AFSI L LAR P RVGG LEP GCF*ALA+S DFS ASKASFDSPG+FP LAI Subject 7770 ELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAI 8120
Range 3: 7584 to 7727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 38/48(79%) | 0/48(0%) | Plus/Minus |
Query 614 LTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP**SPSLLST 757 LTPKAFKPP+TS TV+A ASLGPQFSI IDSPVALM+QP P LLST Subject 7584 LTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST 7727
Range 4: 7469 to 7543 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 15/25(60%) | 0/25(0%) | Plus/Minus |
Query 798 PEFQTDSTYMEAVKTITIIKGTRQS 872 PEFQTD+T M A++ +T IKGT+ S Subject 7469 PEFQTDNTCMNAIRPMTSIKGTKFS 7543
Range 5: 7516 to 7842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 57/109(52%) | 0/109(0%) | Plus/Minus |
Query 499 LQRFQSGLKSFI*LTRQLSWWARHLTMSTMIINFFTNMANP*SLQTP*HFLNC*SERLTWATIFN*Y*LPSGSYETTLMITIIAVYMCKD*GCNYNAY*NQNSKQIVHI 825 LQRF G KS I* T + H TMIINFF + ANP*SLQT H L+ + LTWA +FN *L SG E TL++ AVYM KD NYN+Y +QNSKQ +H+ Subject 7516 LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV 7842
Range 6: 7891 to 8124 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 44/78(56%) | 0/78(0%) | Plus/Minus |
Query 217 LQAANNRTMACNIYCNVKLITL*YARLTECSNQLIYCTFIHDIWR*HNRFMLQHLSHVHSF*KSILNNPLSFSKDTTK 450 L A N R + C IY ++KL YAR T+C+NQL+YCTFIHDIW H+RF+ Q+L HVH *K IL NPL+F K+ T+ Subject 7891 LGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATE 8124
Range 7: 7479 to 7970 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 90/164(55%) | 0/164(0%) | Minus/Plus |
Query 371 VPLIIVIVLTASIYVLSVWNSGSSXXXXXXXXXXXXRQQ*W*SSRLSHKSHWGVNIN*KLWPK*GARFNS*GSVRGFEGFRG*PYW*RNXXXXXXXLDGEPTRKVAG*VK*SF*GQTEIFGAGKGSKAAYWF*PTSYPWWCPC*KKEGY*ECSFKNCGHARGVE 862 VPL++VI L A I+VLSVWNSG R CNC+PNPC+CRQQ*W RL H HW VN +*KL PK*G + G FEGFRG*P *RN*LSLL L+G+ + *+K* F* +I G SKAA F* T+Y W C +E Y EC+FK+ GH G E Subject 7479 VPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAGVS*SSKAAGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFE 7970
Range 8: 7995 to 8114 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 23/40(57%) | 0/40(0%) | Minus/Plus |
Query 227 KCHG*RCNR*VDSSIR*VWHIRE*SI*RCNRYCTPLFCCW 346 KCHG*RCNR DS I *+WH + +I* +RY T L CW Subject 7995 KCHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW 8114
Range 9: 7514 to 7843 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 60/110(55%) | 0/110(0%) | Minus/Plus |
Query 498 HICTICLEFWF**AL*LQP*SLHM*TAMMVIIKVVS*EPLGSQY*LKIVAQVRRSLQQLRKC*GV*RL*GLAXXXXXXXXXXXXVRWRAHQESCRVSQMKLLRPD*NLWS 827 H C +CLEFW * L*L SL M*TA++ KV S PL SQ+*LK AQVR R+C V*RL*GLA+L+KKLIIIV + W+ + V+QM+LL+P *N WS Subject 7514 HTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS 7843
Range 10: 7916 to 8074 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 29/53(55%) | 0/53(0%) | Minus/Plus |
Query 267 RGLLRMLFQKLWTCERC*SMNLLCYLQMSWMKVQ*MS*FEHSVSLAYQRVINL 425 RGL RM FQ+ WT R *+ + QMSWMKVQ* S*F H V+LA + NL Subject 7916 RGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNL 8074
Range 11: 7628 to 7969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 55/114(48%) | 0/114(0%) | Plus/Minus |
Query 372 STPLACPQFLKEHSQ*PSFF*QGHHQG*EVG*NQ*AAFEPLPAPKISVWPQKLHLTHPATFLVGSPSNNVNNDNQFLHQYG*PLKPSNPLTLP*LLKRAPHLGHNFQLILTPQW 713 S P +CP LK HS * S Q H * V *N AAFE P I QK HL H P + NNDNQFL Q+G*PLKPSN P + PHLG +FQ LT QW Subject 7628 SKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQW 7969
Range 12: 8027 to 8167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 15/47(32%) | 0/47(0%) | Plus/Minus |
Query 174 CKNSQLESNSHASNPPSCQQQNNGVQYLLQR*IDHSLICQTHRMLES 314 C +++S S Q Q++ V YL I +CQ H+M ES Subject 8027 CLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES 8167
Range 13: 7425 to 7571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 31/49(63%) | 0/49(0%) | Plus/Plus |
Query 858 GTRQSFPNTGLYGQSQNIVPLIIVIVLTASIYVLSVWNSGSSRRCNCNP 1004 G +QSFP++G++GQS+N VPL++VI L A I+VLSVWNSG R CNC+P Subject 7425 GPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHP 7571
Range 14: 7409 to 7570 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 25/54(46%) | 0/54(0%) | Minus/Minus |
Query 842 GLQLHRLLEPEFQTDSTYMEAVKTITIIRGTMF*D*P*SPVFGNDCLVPLIIVI 1003 G QL L PEFQTD+T M A++ +T I+GT F D P P G DC P +++ Subject 7409 GWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VIL 7570
Nucleotide Sequence (613 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
374.5 | 1985.9 | 22% | 5.309e-111 | 62% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7582 to 8040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.1 bits(642) | 0.0 | 144/153(94%) | 0/153(0%) | Minus/Plus |
Query 1 HVDSSSGDHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHTVEEIDYHC*IG*MASQIGKLPGESNEAFXXXXXXXXXXXXXXQPEGSNTSPTLSGVLAKRKRVIENALSKSVDMREVLKHETVVISPNVMDEGAIDELIRAF 459 HVDSSSG+HQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVS VEEIDYHC*IG*MASQIGKLPGESNEAFEARLK+LELARAQKQPEGSN PTLSG+LAKRKR+IENALSK+VDMREVLKHETVVISPNVMDEGAIDELIRAF Subject 7582 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAPPTLSGILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAF 8040
Range 2: 7428 to 7574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 49/49(100%) | 0/49(0%) | Minus/Plus |
Query 467 PKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPN 613 PKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPN Subject 7428 PKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPN 7574
Range 3: 7433 to 8035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
374.5 bits(811) | 0.0 | 156/201(78%) | 0/201(0%) | Plus/Minus |
Query 6 HESAHLLLPHP*HSGKSPQFRVSTPPSCPLILRVHFRSPSYAWQAHH*E*VTYWNLLAVFGLELTPELLTGPRMPHLTHPGVSQFDLPFSQFNNDNQFLQQYG*PLKPSNLPTLPSQWMQGPHLGHNFQSKLIRQWP**NNLGDRRYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPITSIKGTKFSDCPNIPELGKDC 608 HESA LL HP*H GKSP FRVS PPSCP L+VH S WQ H*E*V + NL A F L LTP +L G + PHL H GVSQFDLPFSQFNNDNQFLQQ+G*PLKPSNLP PSQWMQGPHLG +FQSKL QWP**+NLG YCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRP+TSIKGTKFSD PNIPELGKDC Subject 7433 HESARLLHLHP*HLGKSPPFRVSKPPSCPPSLKVHSL*SSCVWQECH*E*VVH*NLPAAFEL*LTPAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDC 8035
Range 4: 7438 to 7827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.9 bits(526) | 0.0 | 103/130(79%) | 0/130(0%) | Plus/Minus |
Query 214 PGLECLI*LTREFPNLTCHLANSTMIINFFNSMANP*SLQTSQHFLHSGCKGLTWATIFNQN*FASGPDKTTLVIAATAVYMSKDLDGNYNSYQDQNSKQIIHV*MQSDL*QALRAQSSQTAQISLSWER 603 PG + LI* T EFPNLTCH AN TMIINFFNS ANP*SLQTSQH LHSGCKGLTWA +FNQN* +SGP++ TLV+A TAVYMSKDLDGNYNSYQDQNSKQ IHV*M+ DL*QALRAQ+SQ +IS SW R Subject 7438 PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGR 7827
Range 5: 7860 to 8000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 40/47(85%) | 0/47(0%) | Plus/Minus |
Query 41 TFGEITTVSCFNTSLMSTDFESAFSITLLRLASTPLRVGDVLEPSGC 181 TFGEITTVSCF TSLMST FESAFSI LLRLA PLRVG LEPSGC Subject 7860 TFGEITTVSCFKTSLMSTVFESAFSIILLRLARMPLRVGGALEPSGC 8000
Range 6: 7434 to 7805 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
242.5 bits(523) | 0.0 | 107/124(86%) | 0/124(0%) | Plus/Minus |
Query 236 DSPGSFPI*LAI*PIQQ**SISSTVWLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALIKQPW*SPLLLST*ARIWMAITIPTKTRIPNR*YMYECNQTYNKH*GHKVLRLPKYP*AGKGL 607 DSPGSFPI*LAI PI Q**SISST LTPKAFKPP+TSFTVDARASLGPQFSIKIDSPVAL+KQPW PLLLST*ARIWMAITIPTKTRIPNR YMYEC+ TY+KH*GHK+LRL +YP AG+GL Subject 7434 DSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQYMYECD*TYDKH*GHKILRLAEYPRAGEGL 7805
Range 7: 7885 to 8040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 33/52(63%) | 0/52(0%) | Plus/Minus |
Query 1 KSTNQLIYCSLIHNIRGNHHSFVFQHLPHVH*F*ECIFDHPLTLGKHTTKSR 156 K TNQL+YC+ IH+I GNHH FVFQ+LPHVH *+CI +PL GK+ T+SR Subject 7885 KCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKNATESR 8040
Range 8: 7436 to 7714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 72/93(77%) | 0/93(0%) | Minus/Plus |
Query 327 VLSQLRDIWAV*ELCALNACYRSDCIHTCIICLEFWSW*EL*LPSKSLLM*TAVAAITKVVLSGPLANQF*LKIVAQVRPLHPL*RKCWEV*R 605 +L QL DI +*E CALNAC+RS+ IHTCI+CLEFWSW*EL*LPSKSLLM*TAV A TKV GPL +QF*LK AQVRPLHPL*R+CWEV*R Subject 7436 ILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*R 7714
Range 9: 7772 to 8035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 57/88(65%) | 0/88(0%) | Minus/Plus |
Query 6 WQVKLGNSRVSQMRHSRPG*KLWS*LEPKNSQKVPIRHLLLVVCLPSVRG*SKMHSQNQWT*GRC*NTKLW*FPRMLWMREQ*MS*FV 269 WQVKLGNS V+QMR +PG* WS*LE K+S+KV + HLL V LP+ RG +MH Q +WT*GR *NTK W*FP+M WM+ Q* S*FV Subject 7772 WQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVLMHHLLSVAFLPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FV 8035
Range 10: 7614 to 7742 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 35/43(81%) | 0/43(0%) | Minus/Plus |
Query 299 LFYQGHWRINFD*KLWPK*GPCIHCEGSVGRFEGFRG*PYC*R 427 L + GHWR+NFD*KL PK*GPCIHCEG GRFEGFRG*P C*R Subject 7614 LLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*R 7742
Range 11: 7863 to 8036 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 36/58(62%) | 0/58(0%) | Minus/Plus |
Query 5 ARRFQYVTYS*WCACQA*EGDRKCTLKISGHEGGVETRNCGDFPECYG*GSNR*ADSC 178 A RF TYS W +CQ E R+CT K GHEGG ETRN GDFP+C+G* NR ADSC Subject 7863 AGRF*CTTYSQWHSCQTQEDYRECTFKDGGHEGGFETRNGGDFPKCHG*RCNRRADSC 8036
Nucleotide Sequence (303 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
207.7 | 1087.6 | 53% | 2.708e-53 | 63% | NC_001948 | |
85.4 | 171.4 | 24% | 8.515e-21 | 52% | NC_028975 | |
65.2 | 117.6 | 30% | 2.176e-20 | 42% | NC_009892 | |
84.9 | 117.1 | 25% | 2.973e-20 | 52% | NC_028868 | |
86.3 | 167.7 | 24% | 6.232e-21 | 48% | NC_025388 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 8038 to 8316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.7 bits(447) | 0.0 | 83/93(89%) | 0/93(0%) | Minus/Plus |
Query 2 WAKKGFNENEKFDVAIDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF 280 + + G E+ +FDVAIDIARHCSDVGSSQRSTLIGKSPFC+LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF Subject 8038 FGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF 8316
Range 2: 8049 to 8315 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 75/89(84%) | 0/89(0%) | Plus/Minus |
Query 3 NFSFSLNPFLAQLAGGIPVSKWIFHTIFA*YMQNLRSVVTSLIIPAISDLFNSQKGLLPIRVDL*ELPTSEQWRAMSIATSNFSFSLNP 269 NFSFSLNPFLAQLAGGIPVS+W+FHTIFA*YMQNLR+VVTSLIIPAISDLF SQ GLLPIRVDL ELPTSEQ RA+S+ATSN + S P Subject 8049 NFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMP 8315
Range 3: 8068 to 8316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.7 bits(292) | 0.0 | 55/83(66%) | 0/83(0%) | Plus/Minus |
Query 2 KLFILIKSFLGPISWWYSRLQMDIPHDFCIVHAKSAQCGHLSYNSSNFRPI*LAEGAFTNQG*PLRTSHIRAVASNVYCNIKL 250 KLFILIKSFLGP+SWWY RLQMD+PHDFCIVHAKS CGHL YN S F +*+ + NQG*PL ++IRAV +Y +IKL Subject 8068 KLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKL 8316
Range 4: 8070 to 8315 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 53/82(65%) | 0/82(0%) | Minus/Plus |
Query 3 V*CCNRHCSPLL*CGKFSEVNPDW*KPLLRVK*V*NCWNYKRGDHTAQILHVLCKNRVEYPFGDGNTTS*LGQERI**E*KV 248 +*C +R+ + LL*C EVNPDW + +L K + N W+YK GDH ILHVLCKNRVE+P GDG+TTS*LGQERI**E*KV Subject 8070 I*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KV 8315
Range 5: 8072 to 8317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 52/82(63%) | 0/82(0%) | Plus/Minus |
Query 1 QTFHSH*ILSWPN*LVVFPSPNGYSTRFLHSTCKICAVWSPLL*FQQFQTYLTRRRGFYQSGLTSENFPHQSSGEQCLLQHQ 246 QTFHSH*ILSWP+*LVV PSP+G STRFLHSTCKI +WSP L* Q F L + QSGLTS ++ HQSS L HQ Subject 8072 QTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQ 8317
Range 6: 8123 to 8317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 47/65(72%) | 0/65(0%) | Minus/Plus |
Query 1 RGQP*LVKAPSAS*IGLKLLEL*ER*PHCADFACTMQKSCGISIWRREYHQLIGPRKDLMRMKSL 195 RGQP*L + +* K L L* R*PH DFACTMQKSCG SIWRR YHQL GPRKDLMRMKSL Subject 8123 RGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSL 8317
Range 7: 8260 to 8316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 19/19(100%) | 0/19(0%) | Minus/Plus |
Query 245 TGIPPANWAKKGFNENEKF 301 TGIPPANWAKKGFNENEKF Subject 8260 TGIPPANWAKKGFNENEKF 8316
Range 8: 8260 to 8316 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 17/19(89%) | 0/19(0%) | Plus/Minus |
Query 245 KLFILIKSFLGPISWWYSR 301 KLFILIKSFLGP+SWWY R Subject 8260 KLFILIKSFLGPVSWWYPR 8316
Range 9: 8259 to 8318 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 19/20(95%) | 0/20(0%) | Plus/Minus |
Query 243 SNFSFSLNPFLAQLAGGIPV 302 +NFSFSLNPFLAQLAGGIPV Subject 8259 ANFSFSLNPFLAQLAGGIPV 8318
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 8222 to 8377 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 32/52(62%) | 0/52(0%) | Minus/Plus |
Query 2 LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF 157 + R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W K+G+ EN KF Subject 8222 VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKF 8377
Range 1: 8549 to 8662 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 22/38(58%) | 0/38(0%) | Minus/Plus |
Query 2 TLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF 115 TLR+FC YYAK+VWN+ LET PPA W+ KG+ + K+ Subject 8549 TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKY 8662
Range 2: 8378 to 8533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 22/52(42%) | 0/52(0%) | Minus/Plus |
Query 125 WAKKGFNENEKFDVAIDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIR 280 + K G + ++ +V + IARHC+DVGSS +S LIG P ++ E+A II+ Subject 8378 FTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK 8533
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 8162 to 8317 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 31/52(60%) | 0/52(0%) | Minus/Plus |
Query 2 LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF 157 + R EIA +I++ TTLRR+C +YAKIVWNI L T IPP+ W KKG+ +N KF Subject 8162 VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKF 8317
Range 1: 8207 to 8356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 33/50(66%) | 0/50(0%) | Minus/Plus |
Query 2 RSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKF 151 R EIA +I++ TTLRRFC +YAKIVWNI L T IPP+ W KKG+ EN KF Subject 8207 RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKF 8356
Nucleotide Sequence (325 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
221.5 | 1004.8 | 43% | 2.226e-57 | 74% | NC_001948 | |
77.6 | 106.1 | 26% | 5.926e-17 | 42% | NC_004667 | |
79.9 | 104.3 | 25% | 2.058e-16 | 45% | NC_016509 | |
84.9 | 84.9 | 20% | 2.785e-16 | 48% | NC_009087 | |
50.1 | 121.9 | 26% | 1.591e-16 | 46% | NC_030746 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2228 to 2515 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.5 bits(477) | 0.0 | 88/96(92%) | 0/96(0%) | Minus/Plus |
Query 3 DFNWVVRNIGFEDRLKGRGASFFSKPGISRYSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNLI 290 DFNWV +NIGF+DRL+GRGASFFSKPGIS +SYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYE G KVLTVNLI Subject 2228 DFNWVAKNIGFKDRLRGRGASFFSKPGISCHSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYEIGHKVLTVNLI 2515
Range 2: 2227 to 2514 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.8 bits(373) | 0.0 | 76/96(79%) | 0/96(0%) | Minus/Plus |
Query 4 GFQLGGEEYWL*R*VERQGCIILLKTRDFTL*LQWWKPYKSRVA*VHGSDSKLHRWA*LLQFMPGSNL*RKFKIGPS*G**ELL*NWAQGFNCQFN 291 GF LGGEE+W *R ERQGCIILLKTR+F *LQWW+P+K RVA VHGSDSKLH W *LLQFMPGS+L* KFKIG S*G**ELL*NWAQ F+C FN Subject 2227 GF*LGGEEHWF*RQAERQGCIILLKTRNFMS*LQWWEPHKLRVAKVHGSDSKLHWWT*LLQFMPGSDL*GKFKIGSS*G**ELL*NWAQSFDC*FN 2514
Range 3: 2229 to 2513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 73/95(77%) | 0/95(0%) | Minus/Plus |
Query 5 ISTGW*GILALKIG*KAGVHHSSQNQGFHVIATMVEAIQV*GGLSSWIRF*APPVGVTTTIHAWLKSMKKIQNWPFIRMMRVAMKLGSRF*LSI* 289 I TGW L LK G*+AGVHHSSQNQ FHVI TMV A Q *GG SSWIRF*AP V V TTIHAWL+SM+KIQNW FIRMMRVAMKLG++F*L I* Subject 2229 ILTGWRRTLVLKTG*EAGVHHSSQNQEFHVIVTMVGATQA*GGQSSWIRF*APLVDVITTIHAWLRSMRKIQNWLFIRMMRVAMKLGTKF*LLI* 2513
Range 4: 2228 to 2515 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 71/96(74%) | 0/96(0%) | Plus/Minus |
Query 3 N*IDS*NLEPSFIATLIILMKGQF*IFFIDLSQA*IVVVTPTGGA*NLIHELRPP*TCMASTIVAIT*NPWF*EE*CTPAFQPIFKANIPHHPVEI 290 +*I+S N P+FIATLIILMK QF*IF IDLSQA*IVV+T T GA*NLIHEL PP* C+A TIV +T*N WF*EE*CTPA QP+FK N+ HPV+I Subject 2228 D*INSQNFVPNFIATLIILMKSQF*IFLIDLSQA*IVVITSTSGA*NLIHELWPP*ACVAPTIVTMT*NSWF*EE*CTPASQPVFKTNVLRHPVKI 2515
Range 5: 2277 to 2516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 62/80(78%) | 0/80(0%) | Plus/Minus |
Query 2 QLN*QLKP*AQFHSNSHHPYEGPILNFLHRFEPGMNCSSYAHRWSLESDP*T*ATLDLYGFHHCSYNVKSLVLRRMMHPC 241 +LN*Q K AQFHSNSHHPYE PILNF HR EPGMNCS+Y H+WSLESDP*T ATL L G HHC+Y++K LVLRRMMHPC Subject 2277 RLN*QSKLCAQFHSNSHHPYEEPILNFPHRSEPGMNCSNYVHQWSLESDP*TLATLSLCGSHHCNYDMKFLVLRRMMHPC 2516
Range 6: 2224 to 2454 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 67/77(87%) | 0/77(0%) | Plus/Minus |
Query 64 RANFEFSS*I*ARHEL**LRPPVELRI*SMNLGHPRLVWXXXXXXXREIPGFEKNDAPLPFNLSSKPIFLTTQLKST 294 RANFEFSS*I*ARHEL**LRPPVELRI*SMN GHP+LVWLPPL*L* EIPGFEKNDAPLP +LS KP+F TQLKS+ Subject 2224 RANFEFSS*I*ARHEL**LRPPVELRI*SMNFGHPKLVWLPPL*L*HEIPGFEKNDAPLPLSLSLKPMFFATQLKSS 2454
Grapevine leafroll-associated virus 3, complete genome
Range 1: 4875 to 5072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 28/66(42%) | 0/66(0%) | Minus/Plus |
Query 3 YSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNLI 200 Y+YNGGSH S GWP+ ++ IL++ + ++ CL Q Y+ + H DDE CY + +LTVNL+ Subject 4875 YTYNGGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLV 5072
Grapevine leafroll-associated virus 1, complete genome
Range 1: 5357 to 5554 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 30/66(45%) | 0/66(0%) | Minus/Plus |
Query 6 RYSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNL 203 RY YNGGSH S GW K +D++ Y+ CL Q Y + + + H DDE CY +G+ V+TVNL Subject 5357 RYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNL 5554
Range 1: 2281 to 2475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 31/65(48%) | 0/65(0%) | Minus/Plus |
Query 6 YSYNGGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNL 200 YSYNGG H SL WP ++ + G YN CL Q Y+EN+K+ +H DDE C+ TG + TVN+ Subject 2281 YSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNI 2475
Senna mosaic virus isolate Brazilian, complete genome
Range 1: 1879 to 1986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 17/36(47%) | 0/36(0%) | Minus/Plus |
Query 6 YNSCLAQIYEENSKLALHKDDESCYETGLKVLTVNL 113 +N CL Q YE + + H+D+E CY G +VLT+NL Subject 1879 FNQCLVQKYERGASIPFHRDNEPCYPKGHQVLTINL 1986
Nucleotide Sequence (388 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
276.9 | 1265.9 | 25% | 6.034e-74 | 73% | NC_001948 | |
104.6 | 104.6 | 30% | 4.351e-22 | 39% | NC_029087 | |
82.2 | 162.2 | 39% | 4.46e-20 | 31% | NC_018448 | |
74.4 | 114.9 | 24% | 2.125e-19 | 46% | NC_009892 | |
75.8 | 198.5 | 27% | 1.748e-20 | 49% | NC_005343 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 4025 to 4384 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 116/120(97%) | 0/120(0%) | Plus/Plus |
Query 27 ILGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ 386 + GVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK+DLEMDD CKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ Subject 4025 LTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ 4384
Range 2: 4030 to 4386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.1 bits(557) | 0.0 | 113/119(95%) | 0/119(0%) | Minus/Minus |
Query 32 SWTSSKITQ*PAFRPATFLRKTSKVTTSHPSFFDLPALATLQPSSISRSLLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVSSLGLISVVDIPESQGFASLNFSSLITP 388 +WTSSKITQ PAF PATFLRKTSKVTTSHPSFFDLPALATLQ SSISRS LIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTV+SLGLISVVDIPESQGFASLNFSSLITP Subject 4030 NWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITP 4386
Range 3: 4034 to 4384 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 87/117(74%) | 0/117(0%) | Minus/Minus |
Query 36 LDLIKNHTVTSLQTSNFSKEDLKSYYIPPFLL*PACLGNFAAIIHLKITFD*IR*SSSWRNKSYKFTLRPLHETFVQKTLPSPKCAKYNR*LSWLNICS*YSRKPRFCITKLFITYH 386 LDLIKNHTV SLQ+ NFSKE+LKSYYIPPFLL*P C NFAAIIH KI FD*I *S+S RNK Y+FTLRP HET VQ+TLPSPKC K++ WLNI S Y+RKPRFCIT+L ITY+ Subject 4034 LDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYN 4384
Range 4: 4021 to 4383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 88/121(73%) | 0/121(0%) | Plus/Plus |
Query 23 GYTWCDK**KV**CKTLAFWNINYRY*AKRANGCTWHIWGWEEFFVQKFHEEV*G*ICNFCFSKTSFSEFNQK*S*DG*WLQSCQGRQVKEGRVGCSNF*GLP*KSCWSEGWSLCDF**GP 385 G W K**+V *CKTLAFW I Y Y*AK + W+IWGWEEF VQ+FHE+V*G*I N CFS+T FS+FNQK*S*+G* LQSC R VKEGRVGCSNF*G P*KSC EGW LCDF**GP Subject 4021 GPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GP 4383
Range 5: 4119 to 4382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 68/88(77%) | 0/88(0%) | Minus/Minus |
Query 121 GPHQKSHSDQPSDQQLF*GRPQKLLHPTLPSLTCLPWQLCSHHPSQDHF*LNSLKLVLEKQKLQIYPQTSS*NFCTKNSSQPQMCQVQ 384 GPHQKSHS QPS QLF*G+PQKLLHPTLPSLT L QLCS+HP QDHF*LN LK V EKQ+L+IYPQT S*N CT+NSSQPQM Q + Subject 4119 GPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQAR 4382
Range 6: 4020 to 4085 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 16/22(73%) | 0/22(0%) | Minus/Minus |
Query 22 IFQKAKVLHH*TFHHLSHQVYP 87 I+QKAKVLHH*T HHL Q+ P Subject 4020 IYQKAKVLHH*TSHHL*RQLGP 4085
Range 7: 4038 to 4190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 37/51(73%) | 0/51(0%) | Plus/Plus |
Query 40 *VMKSLVMQNLGFLEYQLQILSQES*RLYLAHLGLGRVFCTKVS*RGLRVN 192 *VM+S VMQNLGFL Y L ILSQ +* L HLGLGRV CT+VS*+GLRVN Subject 4038 *VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN 4190
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3571 to 3924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 46/118(39%) | 0/118(0%) | Plus/Plus |
Query 33 GVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ 386 G IS ++D + + R L V+LGTFGAGKS L+K FM ++G+ +T+VSPRR LA SD+++D + +++ + W V TFE FL + ++ G VI DEVQ Subject 3571 GAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQ 3924
Range 1: 3555 to 3776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 36/74(49%) | 0/74(0%) | Plus/Plus |
Query 27 ILGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDL 248 + G IS F D + D RE+T +LGTFGAGKS+L+K FM ++ GK + F+SPRRALAN IK D+ Subject 3555 VTGAISSNLFHDQGNLIEQSINPDGVEREITWILGTFGAGKSYLFKKFMVQNPGKEIIFISPRRALANEIKRDV 3776
Range 1: 3998 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 31/67(46%) | 0/67(0%) | Plus/Plus |
Query 96 DIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKK 296 +I R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K G+ K Subject 3998 NIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 1: 3586 to 3780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 32/65(49%) | 0/65(0%) | Plus/Plus |
Query 108 RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKSDLEMDDGCKVAKAGRSKKEG 302 RE+T VLGTFGAGKS L+K F+ +S G+ VTFVSPR+ALA ++K+++ + K K++G Subject 3586 REVTAVLGTFGAGKSRLFKEFISKSPGRCVTFVSPRKALAEAVKTEIFGESREGKKKGRNGKRDG 3780
Range 2: 3781 to 3876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 18/32(56%) | 0/32(0%) | Plus/Plus |
Query 291 KKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQ 386 K W+V TFEVFL+ A K G VI DEVQ Subject 3781 KSANWNVFTFEVFLKMAAKSKPGQVVIIDEVQ 3876
Nucleotide Sequence (498 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
271.9 | 1338.9 | 42% | 2.674e-78 | 53% | NC_001948 | |
190.3 | 412.1 | 35% | 1.976e-51 | 33% | NC_009892 | |
176.1 | 377.7 | 38% | 2.78e-48 | 34% | NC_012038 | |
182.1 | 355.7 | 32% | 1.63e-49 | 28% | NC_003462 | |
178.9 | 317.5 | 23% | 2.027e-48 | 52% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5189 to 5527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.9 bits(587) | 0.0 | 109/113(96%) | 0/113(0%) | Minus/Plus |
Query 7 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 345 WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE+TQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+P Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIP 5527
Range 2: 5078 to 5140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 17/21(81%) | 0/21(0%) | Minus/Plus |
Query 394 VWEGKLYGGPWLKVMLFLGQD 456 V E KL G PWLKVMLFLGQD Subject 5078 VREEKLCGDPWLKVMLFLGQD 5140
Range 3: 5081 to 5530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.1 bits(509) | 0.0 | 100/150(67%) | 0/150(0%) | Plus/Minus |
Query 4 RWNLRKESV**ELPVWLCAPQFCSFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPLFI*AFQFHFLDFTILILT*KKHDFKPWTTI*LPLP 453 +W+ E +**E P+W PQF SFNL LRKF TLSD HEEGY II MPWVNAFK TC+ QLLT STP+LIK+LLS+ I+TTHLP+ FQGHFTHP GP LQI GDV FKP FI*AF H +FTILILT +KH+F PW T *L LP Subject 5081 QWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLP 5530
Range 4: 5188 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 94/113(83%) | 0/113(0%) | Plus/Minus |
Query 8 GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLNH 346 G L+RK S+KNFPYG ARL+ AAST G EN RRFRTAMRKV+ESFPLCLG*MLSNLSHALL+CSPVPPLCSSKNC*V S PQRTSR SFKAILPT ALVDSRLL+GM VLNH Subject 5188 GILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH 5526
Range 5: 5077 to 5121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 8/15(53%) | 0/15(0%) | Plus/Minus |
Query 413 MTLSHGPPYNFPSHT 457 +T +HG P+NF S T Subject 5077 ITFNHGSPHNFSSLT 5121
Range 6: 5082 to 5528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 101/149(68%) | 0/149(0%) | Minus/Plus |
Query 6 GRGSYMVVHGLKSCFF*VKMRIVKSRKWNWNAQMKSGLKLTSP*AIWSRQGPAGWVKWP*KNTGRCVVDMR*LNNFLMSTGVEPVSN*VTHVKDLKAFTQGIRGMIXXXXXXXXXSV*NFLSLKLKLQN*GAQSHTGSSY*TLSFLRFH 452 GR SY+V HG K CF VKMRIVK ++W+ NAQMK+GLK TSP* IWS+ GP GWVKWP*K+ GRCVV M+*LNN LMS GVE VSN* HV+ LKAFTQGI+ MI *PSSW SESV NF S +LKL N*G +H G+SY* LS+ + H Subject 5082 GRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH 5528
Range 7: 5097 to 5513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 90/139(65%) | 0/139(0%) | Plus/Minus |
Query 21 GKCLVRTSRMALRASILQLQLEA*KILDAFGRP*GRLWNHSPYALGKCFQIFHMRYSIAHRFHPCAHQKIVELPHIHNAPPGVLSRPFYPPSGPLSTPDCLGGCEF*TTLHLSIPIPFPRLHNPHLDLEKA*L*AMDHH 437 GK L+R S M AS+ QLQ A KI DAFG+P*GRL NH YALGKCFQ HM S+AH+FHP AHQ+IVE H HNAPP LSRPFYPP+ P TPD GC F*T LHLSI P +LHNPHLD KA*L M HH Subject 5097 GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHH 5513
Range 8: 5167 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 58/86(67%) | 0/86(0%) | Minus/Plus |
Query 110 IGMLK*RVV*NSHPPKQSGVDKGPLGG*NGLERTPGGALWI*GNSTIF**AQGWNR*AIE*RM*KI*KHLPKA*GE*FHNLPHGRP 367 + MLK*R+V*N HP + SGV++G +GG*NGLER GGALW+* +STI **A GWN *A E M*++*KHLPKA* +*F+NLPHG P Subject 5167 VRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCP 5424
Range 1: 5087 to 5425 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.3 bits(409) | 0.0 | 74/113(65%) | 0/113(0%) | Minus/Plus |
Query 7 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 345 WFKTHIP+ LE+ RARWV K+ KE RE R G+EVT+QF DEH G+Q++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +P Subject 5087 WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIP 5425
Range 2: 4976 to 5035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 13/20(65%) | 0/20(0%) | Minus/Plus |
Query 397 VWEGKLYGGPWLKVMLFLGQ 456 V E KL G PWLK +FLGQ Subject 4976 VREPKLSGDPWLKTAIFLGQ 5035
Range 3: 5089 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 59/112(53%) | 0/112(0%) | Plus/Minus |
Query 8 GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLN 343 G RKV +N P G A LN A S G E F TA+R V ES PLCLG*++S LS AL+ C P LCSS NC VTS P S SF +IL T AL SR GM VLN Subject 5089 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVICLPGFLLCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN 5424
Range 4: 4958 to 5395 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 48/146(33%) | 0/146(0%) | Plus/Minus |
Query 37 ELPVWLCAPQFCSFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPLFI*AFQFHFLDFTILILT*KKHDFKPWTTI*LPLPYQTHPTH 474 E W +P F +FN L + + H E + LMP +N+F F+CV L + + KLLS+L++ L F +F HP P L+ +V F+P+F+ F HFL + +LT K F+P T * L Y P + Subject 4958 EFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT*FRLAYLFIPAN 5395
Range 1: 4568 to 4906 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 71/113(63%) | 0/113(0%) | Minus/Plus |
Query 7 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 345 WFKTH+PL +ES RA WV KE+REVR GY V+ QF DEH G+ L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL A+ YGK+LLD FL VP Subject 4568 WFKTHLPLCEMESVRASWVQNFKAKENREVRKGYLVSDQFTDEHSKNRGKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVP 4906
Range 2: 4457 to 4519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 14/21(67%) | 0/21(0%) | Minus/Plus |
Query 394 VWEGKLYGGPWLKVMLFLGQD 456 V E KL G PWLK M+FLGQ+ Subject 4457 VREDKLAGDPWLKTMVFLGQE 4519
Range 3: 4567 to 4905 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 55/113(49%) | 0/113(0%) | Plus/Minus |
Query 8 GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLNH 346 GT +K+SS+ FP A + A ST GLEN +RF TA+RKV S LCLG*M S S A ++ P+ CSS N +T P RTS SF TQ A S RG *VLNH Subject 4567 GTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*MASKRSAAFVSIFPLFFECSSVN*SLTR*PLRTSLFSFALKFWTQEARTLSISQRGR*VLNH 4905
Range 4: 4478 to 4840 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 41/121(34%) | 0/121(0%) | Plus/Minus |
Query 73 SFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPLFI*AFQFHFLDFTILILT*KKHDFKPWTT 435 + N R RK * L GH++ I +PWVN FK+ + + + + VLI KL+++ I+ H VFF P + G+VSF+P F F+ F IL L + H F+P T Subject 4478 ALNHRFRKS*ALLHGHKKSNSIAVFVPWVNGFKALSGICEYFSPIF*VLICKLIAHEIAFAHFSVFFCFEILDPRSSHTFHLTEGEVSFEPWFSQYRFFNL*LFNILFLAKEHHCFQPRIT 4840
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5238 to 5582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.1 bits(391) | 0.0 | 72/115(63%) | 0/115(0%) | Minus/Plus |
Query 1 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPPN 345 WFKTHIP+ +LE+ RA+WV K+ +E RE R G T+QF D+H G++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VP N Subject 5238 WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLN 5582
Range 2: 5127 to 5189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 13/21(62%) | 0/21(0%) | Minus/Plus |
Query 394 VWEGKLYGGPWLKVMLFLGQD 456 V E KL G PWLK +FLGQ+ Subject 5127 VREAKLVGDPWLKTKIFLGQN 5189
Range 3: 5240 to 5575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 56/112(50%) | 0/112(0%) | Plus/Minus |
Query 8 GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLN 343 GTL RKVSS+N P G A +FA S G E F TA+R V S PLCLG + S S AL+N P L SS NC V P R S S + L T AL SRL+ GM VLN Subject 5240 GTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVNS*PRFLL*SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN 5575
Range 4: 5235 to 5519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 27/95(28%) | 0/95(0%) | Plus/Minus |
Query 64 QFCSFNLRLRKF*TLSDGHEEGYGIIPLMPWVNAFKSFTCVTQLLTGSTPVLIKKLLSYLISTTHLPVFFQGHFTHPAGPCRLQIA*GDVSFKPL 348 +FC R + +L + H++ I LMP V +F + + ++ LLT V+I +LLS ++ LP+ + F +P L+ DV +P+ Subject 5235 KFCMLCSRGGEAQSLLNCHKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPI 5519
Range 1: 5242 to 5580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 70/113(62%) | 0/113(0%) | Minus/Plus |
Query 7 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 345 WFKTH+P+ LE+ RA+WV ++ KE RE R G T+QF DEH G +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VP Subject 5242 WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVP 5580
Range 2: 5131 to 5190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 13/20(65%) | 0/20(0%) | Minus/Plus |
Query 397 VWEGKLYGGPWLKVMLFLGQ 456 V E KL G PWLK +FLGQ Subject 5131 VREAKLVGDPWLKTKIFLGQ 5190
Range 3: 5244 to 5579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 58/112(52%) | 0/112(0%) | Plus/Minus |
Query 8 GTLERKVSSKNFPYGFARLNFAAST*GLENFRRFRTAMRKVMESFPLCLG*MLSNLSHALLNCSPVPPLCSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM*VLN 343 GTL +KVS +NFP G A LN A S G E F TA++ V S PLCLG*M S LS AL++ SP+ LCSS NC V P R SR S + L T AL S + G *VLN Subject 5244 GTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN 5579
Nucleotide Sequence (347 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
228.3 | 750.1 | 41% | 2.117e-59 | 45% | NC_001948 | |
183.0 | 340.1 | 33% | 9.578e-46 | 34% | NC_003870 | |
180.7 | 413.0 | 18% | 4.687e-45 | 38% | NC_018714 | |
180.7 | 445.1 | 34% | 4.687e-45 | 32% | NC_009991 | |
180.2 | 451.0 | 27% | 6.44e-45 | 40% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5756 to 6082 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 95/109(87%) | 0/109(0%) | Minus/Plus |
Query 1 VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS 327 VL F P + YIEKKLMQALKPNFYIHSG G DELNEWVR RGFT +CTES YEAFDASQDHFILAFELQIM+FLGLPEDLILDYEFIKIHLGSKLGSF+IMRFTGEAS Subject 5756 VLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRTRGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEAS 6082
Range 2: 5785 to 6081 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 75/99(76%) | 0/99(0%) | Plus/Minus |
Query 2 LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMY 298 LASPVNLII +PSF+P+*I MNS*SKI+SSG+PKN +IC+SNA+MKWSW+ASKAS* DSV V PL LTHSFSSS+P PE M*KLGF AC+SFFSMY Subject 5785 LASPVNLIIENDPSFDPK*IFMNS*SKIKSSGNPKNFIICNSNARMKWSWEASKAS*SDSVQIPVNPLVLTHSFSSSRPFPEWM*KLGFRACISFFSMY 6081
Range 3: 5756 to 6082 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 53/109(49%) | 0/109(0%) | Plus/Minus |
Query 1 ACLTCKSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTKHTQH 327 A L K HYR+ ++L*++MN E IV N*IFR K H LQF+C DE+VLG +K F+ * CA E+S +P + L+ T+ *++VEVRLQ LH L NV + K Q+ Subject 5756 AGLPSKPHYRE*SEL*SQMNFYEFIVQN*IFR*PQKFHYLQFEC*DEVVLGSIKGFVV*FCANSSESSSSDPLVQLVXTFP*MDVEVRLQSLH*LFLNVSHIGCKANQN 6082
Range 4: 5755 to 6069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 47/105(45%) | 0/105(0%) | Minus/Plus |
Query 14 CVGCVWS*VGVH*KEAHASIEA*LLHSLRHRF**AK*MG*GQRFHRCMHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIY 328 C G + + +H*++A+AS EA*LLH R R A+ +G R H +HR+RL S * PRP H I A++EIF *R NF L*+H++S KA NE+Y Subject 5755 CSGSLCTLYEIH*EKANASSEA*LLHPFRERSXRAERVGQN*RIHWNLHRIRLRSL*CFPRPLHPSIRIADNEIFGVT*RFNFGL*IHKNSFGIKARIILYNEVY 6069
Range 5: 5760 to 6077 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 50/106(47%) | 0/106(0%) | Plus/Minus |
Query 6 PHL*ISLSQKNQALNQDES**THSLKLDLQAVLKIS*FAVQMPR*NGLGMRQKLHSLTLCIHL*NL*P*PIHLAHQNLCLSECRS*ASMLA*ASFQCTPTQDQTHP 323 P * SL + +AL +E * HS KL+LQ KIS A++M *+GLG Q+L SL LC * L* *P A +L L+ CRS*AS LA A QC + Q+ P Subject 5760 PPQ*TSL*RMIRALIPNEFL*IHSPKLNLQVTPKISLSAIRMLG*SGLGKHQRLRSLILCKFQ*IL*F*PTRSARXDLSLNGCRS*ASELALAFSQCISYRVQSEP 6077
Range 6: 5760 to 6029 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 45/90(50%) | 0/90(0%) | Minus/Plus |
Query 54 WVCLVLSWGTLKRSSCKH*SLTSTFTQA*VLMS*MNGLGSEVSQMYAQSQAMKLLTHPKTISSWHLNCKS*DF*DCLKI*F*TMSSSRFI 323 W L TL++S CK *SLTST Q V S* +G E S +AQ+Q K L PKT SS H NC+ *+F LKI*F TM+S +FI Subject 5760 WFALHPI*DTLRKS*CKL*SLTSTSIQGKVXTS*TSGSELEDSLEFAQNQTTKPLMLPKTTSS*HSNCR**NFWGYLKI*FWTMNS*KFI 6029
Sugarcane striate mosaic-associated virus, complete genome
Range 1: 5083 to 5409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 74/109(68%) | 0/109(0%) | Minus/Plus |
Query 1 VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS 327 VL F P + YIEKKL+ +L N+YIHSG FD+LN WV+ F CTES YEAFDASQDH+ILAFEL +M++LGLP +LI DY++IKIHLGSKLG FAIMRFTGEAS Subject 5083 VLARFSPWVRYIEKKLVSSLPDNYYIHSGKNFDQLNAWVKANNFVGECTESDYEAFDASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEAS 5409
Range 2: 5082 to 5408 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 55/109(50%) | 0/109(0%) | Plus/Minus |
Query 2 LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT 328 LASPVNLI+AK P+FEP+*ILM *S I S G P+ + +S A + S ASKAS* DSVH+ K LT + S SK PE +* L + SFFSM G N T Subject 5082 LASPVNLIMAKSPNFEPK*ILMYL*SSINSLGKPRYFINANSKASI**S*LASKAS*SDSVHSPTKLFALTQALS*SKFFPECI**LSGSELTSFFSM*RTHGENRART 5408
Range 3: 5332 to 5409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 14/26(54%) | 0/26(0%) | Plus/Minus |
Query 1 ACLTCKSHYRKRTKL*TKMNLDELIV 78 A T +SHY K T+ *T+MNL+ L+V Subject 5332 AGFTGESHYGKITQF*TQMNLNVLVV 5409
Range 4: 5113 to 5286 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 20/58(34%) | 0/58(0%) | Plus/Minus |
Query 124 FKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNV 297 FK Q ++L C+K I A+ + NP I LIK + V + + Q +LLF V Subject 5113 FKGQYIVILTCIKGLIIRFSAFTHKIVCLNPSIELIKVLSRVYIVIIWQ*TDQLLFYV 5286
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 5806 to 6132 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 75/109(69%) | 0/109(0%) | Minus/Plus |
Query 1 VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS 327 VL F P + YIE K+ + L N YIHSG D+L EWV V F +CTES YEAFDASQDHFILAFEL++M+FLGLP DLI DY FIK HLGSKLG+FAIMRFTGEAS Subject 5806 VLCRFAPYMRYIEAKVFEVLPKNLYIHSGKNIDDLAEWVTVHKFNGICTESDYEAFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEAS 6132
Range 2: 5805 to 6131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 54/109(50%) | 0/109(0%) | Plus/Minus |
Query 2 LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT 328 LASPV +IAK PSFEPR +LM *S +RS G P+N M +S A++KWS DAS AS* DSVH + T+THS SS PE*+*+ + S+Y G N T Subject 5805 LASPVKRMIAKLPSFEPRWVLMKV*SAMRSGGRPRNFMTSNSKARIKWSCDASNAS*SDSVHIPLNLWTVTHSAKSSIFFPE*I*RFLGRTSKTLASIYLI*GANLHRT 6131
Range 3: 5818 to 6132 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 40/105(38%) | 0/105(0%) | Plus/Minus |
Query 1 ACLTCKSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTK 315 AC T K+H K KL T+M +E ++ N + R++ + HDLQ K ++++VL VK FI * CAY E D +P *+I + +N+E+ L L N+P + K Subject 5818 ACFTSKAHDCKIAKLRTQMGFNESVISNEVGRKTKEFHDLQLKSKNKVVL*RVKCFII*FCAYPIELMDGDPLS*IINIFPRMNIEIFG*NLKNLGLNIPHIGGK 6132
Range 4: 5946 to 6131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 26/62(42%) | 0/62(0%) | Minus/Plus |
Query 2 MHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIYR*GK 187 MHR+RL*S *R+ P + * HEI ++ R + L H + S F+AW FC++ +Y * K Subject 5946 MHRIRL*SI*RVTGPLYSCF*VGGHEIPWSSARPHC*LHFH*NPSGFEAWQFCNHALYW*SK 6131
Range 1: 5419 to 5745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 76/109(70%) | 0/109(0%) | Minus/Plus |
Query 1 VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS 327 VL F P + YIEKKL QAL NFYIHSG G +ELNEWV F VCTES YEAFDASQD +I+AFE++++++LGLP DLI DYEFIK HLGSKLG+FAIMRF+GEAS Subject 5419 VLCRFAPYMRYIEKKLHQALPGNFYIHSGKGLEELNEWVMRGRFDGVCTESDYEAFDASQDQYIMAFEIEMIKYLGLPADLISDYEFIKTHLGSKLGNFAIMRFSGEAS 5745
Range 2: 5418 to 5744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 66/109(61%) | 0/109(0%) | Plus/Minus |
Query 2 LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT 328 LASP NLI+AK P+FEP+*+L+NS*S IRS+GSPK +I SNA M WS DASKAS* DSV T +THSF+SS+P PE M*KL A SFFSMY G +T Subject 5418 LASPENLIMAKLPNFEPK*VLINS*SLIRSAGSPKYFIISISNAMMYWSCDASKAS*SDSVQTPSNLPRMTHSFNSSRPFPECM*KLPGKA*CSFFSMYLMYGAKRQST 5744
Range 3: 5448 to 5741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 41/98(42%) | 0/98(0%) | Minus/Plus |
Query 5 VH*KEAHASIEA*LLHSLRHRF**AK*MG*GQRFHRCMHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIYR*G 298 VH*+E +S+ * LH+L * +*+G + RC++RVRL SF I P H G+ N ++ R RS RL V+QDS + FC NEI R G Subject 5448 VH*EETASSLTR*FLHTLWKGP*GVE*VGHAREI*RCLYRVRLRSFRCITGPVHHGVRDRNDKVLRATRRSY*RLRVYQDSLGLEIGQFCHNEILRRG 5741
Range 4: 5419 to 5730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 33/104(32%) | 0/104(0%) | Plus/Minus |
Query 16 KSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTKHTQH 327 +SHY K + +++LD+L++ N I * + + D +VL C++SF+ LC ++ +P I L+K + V VE+ L + L NVP +R + T+H Subject 5419 ESHYGKIAQFRAQVSLDKLVIANKICG*P*VLYHFDLERHDVLVL*CIESFVIGLCTDTVKSPSHDPLIQLLKALSRVYVEITW*GLMQFLLNVPHVRCETTEH 5730
Range 1: 5809 to 6135 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.2 bits(387) | 0.0 | 74/109(68%) | 0/109(0%) | Minus/Plus |
Query 1 VLGVFGPELGYIEKKLMQALKPNFYIHSGIGFDELNEWVRVRGFTDVCTESGYEAFDASQDHFILAFELQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEAS 327 VL F P + YIE K++++L N YIHSG D+L WVR+ F VCTES YEAFDASQDHFILAFEL++M++LGLP DLI DY FIK HLGSKLG+FAIMRFTGEAS Subject 5809 VLCRFAPYMRYIEAKVVESLPKNLYIHSGKNIDDLASWVRIHKFNGVCTESDYEAFDASQDHFILAFELEVMKYLGLPADLISDYTFIKTHLGSKLGNFAIMRFTGEAS 6135
Range 2: 5808 to 6134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 59/109(54%) | 0/109(0%) | Plus/Minus |
Query 2 LASPVNLIIAKEPSFEPR*ILMNS*SKIRSSGSPKNLMICSSNAKMKWSWDASKAS*PDSVHTSVKPLTLTHSFSSSKPMPE*M*KLGFNACMSFFSMYPNSGPNTPNT 328 LASPVN I+AK PSF+PR*+LMN *S+I+S+G P+ M +S A+MKWS DASKAS* DSVHT + LT SS PE*M*+ + +F SMY G N T Subject 5808 LASPVNRIMAKLPSFDPR*VLMNV*SEIKSAGKPRYFMTSNSKARMKWSCDASKAS*SDSVHTPLNL*ILTQDARSSIFFPE*M*RFFGSDSTTFASMYLI*GANLHKT 6134
Range 3: 5812 to 6135 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 43/108(40%) | 0/108(0%) | Plus/Minus |
Query 1 ACLTCKSHYRKRTKL*TKMNLDELIV*N*IFRQS*KSHDLQFKCQDEMVLGCVKSFIA*LCAYICETSDPNPFI*LIKTYA*VNVEVRLQCLHELLFNVPQLRTKHTQ 324 A T +SHY K TK * K++ DE ++*N I Q+ HD QFK Q+E+VL C+KS + C + E + +P +I VNVE+ + LH F V +R K Q Subject 5812 AGFTSESHYGKITKF*PKVSFDECVI*NQICWQTKIFHDFQFKGQNEVVL*CIKSLVVRFCTHTIEFVNSDPGCQIINILPRVNVEIFWE*LHHFCFYVSHIRGKSAQ 6135
Range 4: 5880 to 6122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 35/81(43%) | 0/81(0%) | Minus/Plus |
Query 14 LHSLRHRF**AK*MG*GQRFHRCMHRVRL*SF*RIPRPFHLGI*TANHEIFRTA*RSNFRL*VHQDSSWFKAWFFCDNEIY 256 LHSL +**+ +G + C++R+ L F* I P H G+* +HEI A R +FRL +HQ+S W K W FC N I+ Subject 5880 LHSLWEEY**SGILGQNSQIQWCVYRI*LRGF*CITGPLHSGL*IGSHEISWFASRFDFRLHIHQNSPWVKTW*FCHNAIH 6122
Nucleotide Sequence (603 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
423.5 | 1551.8 | 32% | 8.22e-118 | 50% | NC_001948 | |
112.4 | 288.4 | 36% | 2.421e-44 | 41% | NC_003462 | |
109.7 | 294.5 | 36% | 7.729e-43 | 43% | NC_018714 | |
107.4 | 293.9 | 34% | 1.145e-46 | 38% | NC_009892 | |
101.4 | 289.7 | 26% | 1.451e-42 | 58% | NC_008020 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6356 to 6955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
423.5 bits(918) | 0.0 | 175/200(88%) | 0/200(0%) | Minus/Plus |
Query 3 MGNLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVIV*ALSVWRDVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFIKTKTCRC*HQTC 602 MGNLENCIDNYAIEVSYAYRLGEL+I +MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE I *ALS+W +SIMNNLVKALSAFEFVGVF VLKFPVV+HSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGRYIKPYSPGCAV GK+NILDEYLSV D GFDVLFSDPYQNIS+P+EAHFIK+KTCR TC Subject 6356 MGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTC 6955
Range 2: 6685 to 6957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 71/91(78%) | 0/91(0%) | Plus/Minus |
Query 1 LQVWC*HLQVLVFMKCASLGTLMFW*GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 273 LQV+ +LQV MKCASLG LMFW GSENSTSKP S TDKYSSSI FP TAHPGE*GLMYLPVR GLSGTPAVKA K SSSE+SSLI+ Subject 6685 LQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 6957
Range 3: 6355 to 6615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 64/87(74%) | 0/87(0%) | Plus/Minus |
Query 343 NSNADKALTKLFIILTSRQTLKA*TITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKLPI 603 NSNAD ALTKLFIIL Q LKA*+I SN+PEIEHLILCLF T+ TQL* ASTSSSVI + +SPS A*+TSIA*LS+QFS+LPI Subject 6355 NSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPI 6615
Range 4: 6356 to 6955 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 112/200(56%) | 0/200(0%) | Plus/Minus |
Query 3 AGLVLTPASFGLYEVCLPWNADVLVRV*EQHIKTMNV*DRQVLIKYIYLPLHCTPWRVGLDVPSC*IWTVWYTGCKSHERLVFRNELPY*ATFTATWNTMNNNWKFKHAEHTNKFEC*QSLD*VIHNTHITPNT*GLNNNLKQTRN*APHFVLIPNQETHAVIMRFNFLLSHHAYR*FSKSIGIRHLNCIIINAIFQIAH 602 A + P SF L E+CL NADVLV V EQHIKT + D QVLIKYI P HCTPWR+ L+VPSC I VW T C+S+E L+ N LPY* TFT T +TMN+ WKFKH E+T K +C*Q +*+IHNT I PNT*GL N+ K N*A H +L+P+QE++ +IM +F L HH * S+S+ I L II+N I Q+AH Subject 6356 ASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAH 6955
Range 5: 6357 to 6944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.3 bits(446) | 0.0 | 109/196(56%) | 0/196(0%) | Minus/Plus |
Query 14 WAIWKIALIIMQLRCLMPIDLENYL*A**LRRKLKRIITACVSWFGISTK*GAQFLVCLRLLFRP*VFGVM*VL*IT*SRLCQHSNLLVCSACLNFQLLFIVFQVAVKVA**GSSFLKTSLSWLLQPVYQTVQI*QEGTSSPTLQGVQCKGR*IYLMSTCLSQTFMVLMCCSQTLTRTSAFQGRHTS*RPKLAGVS 601 WA W+I L IM+ R M D E+ ** R+K + II SW G S +* AQF L+LL RP*VFG++*VL*I * + CQH +L V S CLNFQ FIV V VKV **GS F + +S L Q V+QT I QEGT S LQGVQC+G+ IYLMSTC S+ F VLMCCS+T T+TSAF RH S KL G++ Subject 6357 WATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA 6944
Range 6: 6357 to 6956 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 108/200(54%) | 0/200(0%) | Plus/Minus |
Query 2 CRFGANTCKFWSL*SVPPLER*CSGKGLRTAHQNHECLRQTSTHQVYLSSLALHTLESRA*CTFLLDLDCLVHRL*KPRKTRLQK*APLLGYFYRYLEHYEQQLEI*ARRTHQQIRMLTKP*LSYS*YSHHAKHLRPKQ*PQTNQKLSTSFCAYSEPGNARSYNALQLPPQSSRL*IILQVYRHKTPQLHNYQCNFPNCP 601 C++ T KF + *+VP E *C G G RTAHQN + L +TSTHQVY SLALHTLE++A*CTFL D CL H L*K + +K APLL YFY Y HYE LEI*A H Q +MLT *L+YS*YS++AK+LRP Q* Q KLS S A S P +YN L P+SS + L V H+ P HN Q N P CP Subject 6357 CKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCP 6956
Range 7: 6676 to 6957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 57/94(61%) | 0/94(0%) | Minus/Plus |
Query 1 *K*PNKGAHF*RRVFRGFYSRCTRQSKSNRKVHQALLSRVCSAREDKYT**VLVCLRHSWF*CAVLRPLPEHQRSKGGTLHKDQNLQVLAPNLQ 282 *K* NKGA+F F F+SRC+RQ S+RKVH AL SRVCSARE YT**VLV R F*CAVL P+P+HQ S GT H+ +NL V LQ Subject 6676 *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQ 6957
Range 8: 6355 to 6642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 48/96(50%) | 0/96(0%) | Minus/Plus |
Query 316 NGQFGKLH**LCN*GVLCL*TWRIIYRRDD*GGS*SAL*LRAFPGSE*AQNEVLNFWFV*GYCLGLKCLA*CEYYE*LSQGFVSIRICWCVLRA*I 603 +GQ G+L+* LC+ G+LC+ T R + DD G S L*L G E A +E+LNF +* Y LGLK LA EYYE* S VSI +C C A*I Subject 6355 DGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*I 6642
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6702 to 7085 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 56/128(44%) | 0/128(0%) | Minus/Plus |
Query 6 VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFIKTKTCRC*HQT 389 VSIM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS GF+ LFSDPYQN AHFI + R QT Subject 6702 VSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQT 7085
Range 2: 6411 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 34/58(59%) | 0/58(0%) | Minus/Plus |
Query 423 NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 596 NLENCIDNYAIEVS AY++GE +T +EV+AHYNCVRF+V++ H ++ +I LF+ Subject 6411 NLENCIDNYAIEVSCAYKMGENLNLYLTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK 6584
Range 3: 6413 to 6538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 27/42(64%) | 0/42(0%) | Plus/Minus |
Query 469 TRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSK 594 T KRTQL* ASTS V + SP L A +TSIA*LS+QFSK Subject 6413 TMKRTQL**ASTSWGVRYKLRFSPILYAQETSIA*LSIQFSK 6538
Range 4: 6854 to 7021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 23/56(41%) | 0/56(0%) | Plus/Minus |
Query 70 FW*GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT 237 FW*GSE P DKYSS + P P L+Y+P SGTP V A+ Subject 6854 FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTAS 7021
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6676 to 7053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 54/126(43%) | 0/126(0%) | Minus/Plus |
Query 6 IMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFIKTKTCRC*HQT 383 IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS GF+ LFSDPYQN AHFI + R +QT Subject 6676 IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQT 7053
Range 2: 6412 to 6582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 33/57(58%) | 0/57(0%) | Minus/Plus |
Query 426 NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLF 596 NLENCIDNYAIEVS AY++GE ++ +EV+AHYNCVRF+V++ H ++ +I LF Subject 6412 NLENCIDNYAIEVSCAYKMGENLNLYLSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF 6582
Range 3: 6822 to 6980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 23/53(43%) | 0/53(0%) | Plus/Minus |
Query 79 GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKAT 237 GSE KP D+YSS I FP P LM +P F SGTP V A+ Subject 6822 GSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTAS 6980
Range 1: 6482 to 6832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 50/117(43%) | 0/117(0%) | Minus/Plus |
Query 39 VSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDIHGFDVLFSDPYQNISVPREAHFI 389 V++M+ +V L + F ++ ++VH+VPGSGK++LIRE ++ + AF+ G PD PN+ GRYIK G G ILDEYLS GFD FSDP+QN AHF+ Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFV 6832
Range 2: 6260 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 37/60(62%) | 0/60(0%) | Minus/Plus |
Query 417 NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVI 596 NL+NCIDNYAIEVSYAY +GE ++EEE++AHYNCVRF+V++ H ++CS+S LF I Subject 6260 NLQNCIDNYAIEVSYAYSMGESLSKYLSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 3: 6259 to 6438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 30/60(50%) | 0/60(0%) | Plus/Minus |
Query 418 ITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKL 597 I + E EH T TQL*CAS SSS+ +SP *A +TSIA*LSMQF +L Subject 6259 IDLKRSETEHFRRWECLTMNLTQL*CASISSSLKYLESDSPME*AYETSIA*LSMQFWRL 6438
Range 4: 6598 to 6801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 26/68(38%) | 0/68(0%) | Plus/Minus |
Query 70 FW*GSENSTSKP*MSETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 273 F *GSE S P + ++YSSS+ P P M P FG SG+P KA+ +SLIR Subject 6598 F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKASIPKLRLSASLIR 6801
Range 1: 5904 to 6083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 41/60(68%) | 0/60(0%) | Minus/Plus |
Query 417 NLENCIDNYAIEVSYAYRLGELSIGVMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVI 596 NL NCIDNYAIEVSYAY+LGEL++ M EEE EA YNCVR +V+NKH ++ SIS LF+ I Subject 5904 NLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEI 6083
Range 2: 6153 to 6359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 40/69(58%) | 0/69(0%) | Minus/Plus |
Query 174 MNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPY 380 M+ LV F F V VL+ PV+ H VPG+GKS+LIRELI+ D F+AFTAG PD PNL+GR IK Y Subject 6153 MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGRAIKKY 6359
Range 3: 5903 to 6082 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 35/60(58%) | 0/60(0%) | Plus/Minus |
Query 418 ITSNKPEIEHLILCLFRTRKRTQL*CASTSSSVITPIDNSPSL*A*DTSIA*LSMQFSKL 597 I+ NK EIE CLF T TQL AS SSS I+ NSPSL A*+TS+A*LS+Q KL Subject 5903 ISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKL 6082