Nucleotide Sequence (390 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
124.5 | 198.0 | 42% | 6.369e-27 | 42% | HE579658.1 | |
121.4 | 193.5 | 42% | 5.611e-26 | 42% | HE579660.1 | |
115.1 | 172.5 | 47% | 4.356e-24 | 39% | KP774592.1 | |
124.1 | 124.1 | 32% | 8.691e-27 | 42% | KT598241.1 | |
116.4 | 184.1 | 38% | 1.714e-24 | 44% | HE579578.1 |
Alignments
Uncultured totivirus genomic RNA containing putative RdRp, contig 95.1Hv1_454_1
Sequence ID: HE579658.1 Length: 2684 Number of Matches: 2
Range 1: 1617 to 2003 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.5 bits(271) | 0.0 | 57/129(44%) | 0/129(0%) | Minus/Plus |
Query 1 AEDLWAHSEDDFTQSLYLGNTVGRPHRDVDWDDETKKRSQPGKEIHVVTSRGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRTNTTK 387 A D + ++ DD Q LYL N VGRPHRDVDWD E KR + +E+ V T G TE+EL ++ TL AE K SF +FYK RA+WMI+GS +GE+ + + K V + G+ VR TK Subject 1617 AADTFEYTSDDLPQMLYLANMVGRPHRDVDWDAEVVKRKRVLEEVRVATDLGMLNLTEEELEHEILATLLAEGSLKVKKVQSFENFYKDRASWMIKGSAAGERMLINEYKQVLSEVKELGVTVRQRATK 2003
Range 2: 1616 to 1951 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 47/112(42%) | 0/112(0%) | Plus/Minus |
Query 53 TALSSFATFFSPDIDPRIIQLARFL*KSANEGLLPGL*TASASNVSISIALSSCSVDSRVPLLVTTCISLPGCDLFLVSSSQSTSR*GLPTVLPK*SDCVKSSSLCAHKSSA 388 T L S + SP DP IIQLAR L*K +N+ SA+ V+ SS SV +P V T S L S+SQSTSR GLPT+ K S C +SS + ++ S+A Subject 1616 TCLYSLISILSPAADPLIIQLARSL*KFSNDWTFFTFKLPSANRVANISCSSSSSVKFNIPKSVATRTSSSTRFLLTTSASQSTSRCGLPTMFAKYSICGRSSLVYSNVSAA 1951
Uncultured totivirus genomic RNA containing putative RdRp, contig 95.1Hv1_454_5
Sequence ID: HE579660.1 Length: 816 Number of Matches: 2
Range 1: 128 to 514 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.4 bits(264) | 0.0 | 56/129(43%) | 0/129(0%) | Minus/Plus |
Query 1 AEDLWAHSEDDFTQSLYLGNTVGRPHRDVDWDDETKKRSQPGKEIHVVTSRGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRTNTTK 387 A D + ++ DD Q LYL N VGRPHRDVDWD E KR + +E+ V T G TE+EL ++ T AE K SF +FYK RA+WMI+GS +GE+ + + K V + G+ VR TK Subject 128 AADTFEYTSDDXPQMLYLANMVGRPHRDVDWDAEVVKRKRVLEEVRVATDLGMLNLTEEELEHEILATXLAEGSLKV*KVQSFENFYKDRASWMIKGSAAGERMLINEYKQVLXEVKELGVTVRQRATK 514
Range 2: 127 to 462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 47/112(42%) | 0/112(0%) | Plus/Minus |
Query 53 TALSSFATFFSPDIDPRIIQLARFL*KSANEGLLPGL*TASASNVSISIALSSCSVDSRVPLLVTTCISLPGCDLFLVSSSQSTSR*GLPTVLPK*SDCVKSSSLCAHKSSA 388 T L S + SP DP IIQLAR L*K +N+ SA+ V+ SS SV +P V T S L S+SQSTSR GLPT+ K S C SS + ++ S+A Subject 127 TCLYSLISILSPAADPLIIQLARSL*KFSNDWTFYTFKLPSANXVANISCSSSSSVKFNIPKSVATRTSSSTRFLLTTSASQSTSRCGLPTMFAKYSICGXSSLVYSNVSAA 462
Sclerotinia sclerotiorum botybirnavirus 1 segment 1, complete sequence
Sequence ID: KP774592.1 Length: 6457 Number of Matches: 2
Range 1: 4228 to 4608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.1 bits(250) | 0.0 | 49/127(39%) | 0/127(0%) | Minus/Plus |
Query 1 DLWAHSEDDFTQSLYLGNTVGRPHRDVDWDDETKKRSQPGKEIHVVTSRGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRTNTTK 381 + W +SE DF Q LY+ VGRPHR+ DW+ E KRS K I T G + +E++ + M++D L +EA ++ F +Y+ RA WMI+GSMSGEK + + V + GL V + K Subject 4228 ETWLYSETDFPQCLYIAGFVGRPHREADWEAENAKRSAEPKPIRKFTKSGFVDMSEEDEKRMILDFLYSEATFRIKRVQGFERWYRSRAEWMIKGSMSGEKTILDTEPVVMAKLKDLGLKVDGHANK 4608
Range 2: 4221 to 4529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 42/103(41%) | 0/103(0%) | Plus/Minus |
Query 80 FSPDIDPRIIQLARFL*KSANEGLLPGL*TASASNVSISIALSSCSVDSRVPLLVTTCISLPGCDLFLVSSSQSTSR*GLPTVLPK*SDCVKSSSLCAHKSSA 388 FSPDIDP II AR + +N L L AS S I SS S+ S P LV I DL S+SQS S G PT C KS S +H S + Subject 4221 FSPDIDPLIIHSARLRYQRSNPCTLLILNVASEYRKSKIILFSSSSLMSTNPDLVNFRIGFGSADLLAFSASQSASLCGRPTNPAMYKHCGKSVSEYSHVSES 4529
Soybean leaf associated botybirnavirus 1 isolate SaBRV1 1 segment RNA2, partial sequence
Sequence ID: KT598241.1 Length: 2385 Number of Matches: 1
Range 1: 332 to 706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.1 bits(270) | 0.0 | 52/125(42%) | 0/125(0%) | Minus/Plus |
Query 1 WAHSEDDFTQSLYLGNTVGRPHRDVDWDDETKKRSQPGKEIHVVTSRGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRTNTTK 375 W + DF LYL VGRPHRDV+WD E +KR P + T G ++ + + + M+MD LEAE + +F ++YK+RA WMI+GSM GEK V + V + EG V NTTK Subject 332 WMFTNQDFPSCLYLAGLVGRPHRDVEWDTEVEKRQAPDLPLRKYTPTGFQDMGDADTKTMIMDFLEAEGHIRIRKCQAFEEYYKERAQWMIKGSMGGEKTVLDTEPEVRARLTEEGFKVTRNTTK 706
Uncultured chrysovirus genomic RNA containing putative RdRp, contig 447Pv1_454_1
Sequence ID: HE579578.1 Length: 2218 Number of Matches: 3
Range 1: 741 to 1097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.4 bits(253) | 0.0 | 53/119(45%) | 0/119(0%) | Minus/Plus |
Query 1 DFTQSLYLGNTVGRPHRDVDWDDETKKRSQPGKEIHVVTSRGTRESTEQELRAMLMDTLEAEAVYKPGNSPSFADFYKKRANWMIRGSMSGEKNVAKDDKAVWLAINSEGLGVRTNTTK 357 D QSLY+ N VGRPHRDVDWD E +KR + EI +V S G E T ++L+ M+ + L+ EA K S FYK+R+ WMI GS SGEK + D K + + G+ +R TK Subject 741 DVVQSLYMANMVGRPHRDVDWDAEVEKRKRRLGEIRLVGSSGPIEVTIEQLKTMITEMLDEEASIKIAKCQSLEKFYKQRSAWMIGGSASGEKMILSDYKVLIRELTEAGVQLRPKATK 1097
Range 2: 740 to 928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/63(44%) | 0/63(0%) | Plus/Minus |
Query 170 ASASNVSISIALSSCSVDSRVPLLVTTCISLPGCDLFLVSSSQSTSR*GLPTVLPK*SDCVKS 358 AS+SN+S+ + S V S P L T IS LF S+SQSTSR G PT+L C S Subject 740 ASSSNISVIMVFSCSIVTSIGPELPTKRISPNLLFLFSTSASQSTSRCGRPTILAMYRLCTTS 928