Nucleotide Sequence (638 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
110.6 | 189.2 | 27% | 1.566e-24 | 37% | NC_024699 | |
115.6 | 188.8 | 32% | 1.448e-26 | 21% | NC_006937 | |
85.4 | 217.8 | 29% | 4.132e-27 | 28% | NC_028470 | |
85.8 | 124.9 | 18% | 1.427e-20 | 31% | NC_024485 | |
75.3 | 154.4 | 24% | 1.347e-25 | 28% | NC_028467 |
Alignments
Penicillium roqueforti ssRNA mycovirus 1 strain PRG42-7 RNA-dependent RNA polymerase and ORF2 genes, complete cds
Range 1: 3017 to 3367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 45/117(38%) | 0/117(0%) | Minus/Plus |
Query 43 LPSLGTFNFPDVQLLVDSIMHYFTVLIWSNVPPNFKETTPTLRTFGRFAGCLGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLDK 393 L L + P V + +D + V +WS VPPN+KE T R G + V+APTG+GKST ++HL L G + KIV++EPR+ LV L + K+ + C+G T G D+ Subject 3017 LSPLKSIRLPRVDIFLDMVWQVLVVFVWSGVPPNYKELTHLARQLQELKGGVLVTAPTGTGKSTTMVKHLELTLGLFYNKIVIIEPRSALVKSLVPYCKNTLNMSCTGRTMGFDFDR 3367
Range 2: 2807 to 2839 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 8/11(73%) | 0/11(0%) | Minus/Plus |
Query 571 LMVRHWLFCAY 603 L++RHWLFC Y Subject 2807 LLLRHWLFCWY 2839
Range 3: 3040 to 3288 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 31/83(37%) | 0/83(0%) | Plus/Minus |
Query 122 TKRVLGSTTTIFLKRCPATRYRCWIKPVDLPLPVGAETPKQPANLPNVLRVGVVSLKFGGTLLQINTVK*CMMESTSNWTSGK 370 T+ + GS TI L + P+ RC V P+PVGA T P + N V SL FGGT NT + C S + T G+ Subject 3040 TRALRGSIMTILL*KRPSVNSRCLTMVVLFPVPVGAVTSTPPFSSCNWRARWVSSL*FGGTPDHTNTTRTCHTMSRNMSTRGR 3288
Fusarium graminearum dsRNA mycovirus-1, complete genome
Range 1: 3159 to 3479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 49/107(46%) | 0/107(0%) | Minus/Plus |
Query 46 PDVQLLVDSIMHYFTVLIWSNVPPNFKETTPTLRTFGRFAGCLGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLD 366 P V LL+++I+ F L W+NVPPN+KE T +R G L V A TG+GKST FI+HL LV G R+ KI+V+EPR+ LV L +++ +D +G T G D Subject 3159 PRVDLLINTIVGVFIGLFWTNVPPNYKEVTHLVRQLPSMRGPLLVQAGTGTGKSTSFIKHLSLVVGARYNKIIVIEPRSALVRSLVPYVRDTLLVDATGCTAGYDFD 3479
Range 2: 2925 to 3038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 8/38(21%) | 0/38(0%) | Minus/Plus |
Query 487 MVRHWLFCAYMSVRPKQRFGAWFNFAIARISSLQFFLN 600 + RHW++ + +W + +++ +QF LN Subject 2925 LARHWVYLFWFWSSRSAARSSWLSGITYKLNQVQFTLN 3038
Range 3: 3165 to 3392 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 27/76(36%) | 0/76(0%) | Plus/Minus |
Query 133 SWFYHDNLPEAMSSNQIQVLDKTSRFTAPSGGRNTQTASEPTKCSKSGRSFLKIWRHIAPNQHSKVVHDGINQQLD 360 S F ++L ++Q QVLD+ S F PS N Q + S FL I R I P Q ++ HD +NQQ++ Subject 3165 SGFNDNDLIVTGPNHQ*QVLDERSTFAGPSACLNQQRTPHGGELSNEMCHFLVIGRDIRPEQPNEDAHDRVNQQIN 3392
Pleospora typhicola fusarivirus 1 175 kDa protein and 59 kDa protein genes, complete cds
Range 1: 3243 to 3440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 32/66(48%) | 0/66(0%) | Minus/Plus |
Query 43 LGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLDK 240 L +SAPTGSGKST ++H +V GH ++KI+VV+PR+ +V + F+K+ +D SGAT+G+ LD+ Subject 3243 LVISAPTGSGKSTALVRHCAIVCGHLYKKIIVVQPRSSIVRTVVPFVKTTMSMDASGATSGMTLDQ 3440
Range 2: 3084 to 3221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 20/46(43%) | 0/46(0%) | Minus/Plus |
Query 265 PDWLPSLGTFNFPDVQLLVDSIMHYFTVLIWSNVPPNFKETTPTLR 402 PD P + +FPDV LLV+ +++Y + W N+PPN+ +TT LR Subject 3084 PDLFPQVKGVSFPDVNLLVEQMLYYGQNIFWKNLPPNYADTTKHLR 3221
Range 3: 3251 to 3436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 26/62(42%) | 0/62(0%) | Plus/Minus |
Query 47 SSLRPVVAPLQSKP*ADFMKFVKP*TKRVLGSTTTIFLKRCPATRYRCWIKPVDLPLPVGAE 232 S + P+VAP S F K T LG TT IFL + P T + + V LP PVGAE Subject 3251 SKVMPLVAPEASIDIVVFTKGTTVRTMEDLGCTTIIFLYKWPHTIAQ*RTRAVLLPDPVGAE 3436
Range 4: 2982 to 3194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 20/71(28%) | 0/71(0%) | Plus/Minus |
Query 292 IWRHIAPNQHSKVVHDGINQQLDIREIKCAKGR*PIRQRDQREQTSHNQQI*LKLVLPTLSHNLAIQKELK 504 IW I P ++ +++Q+DIR+ R +R ++ ++ ++ +*LK P + N AI+ ELK Subject 2982 IWWKIFPEYILPIIEHLLHKQIDIRKAHTFDLRKQVRNANKAQKRYDSKIM*LKRPSPGIQLNFAIEYELK 3194
Rosellinia necatrix fusarivirus 1 genomic RNA, complete genome, strain: NW10
Range 1: 3231 to 3428 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 35/66(53%) | 0/66(0%) | Minus/Plus |
Query 43 LGVSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLDK 240 L VSAPTGSGKST ++ L GH + K++V+EPR+L+V +T + ++ GLD SGATTG+ LDK Subject 3231 LAVSAPTGSGKSTALVKCLAENVGHLYEKLIVIEPRSLIVTSITPYTQTKLGLDSSGATTGMTLDK 3428
Range 2: 2847 to 3002 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 16/52(31%) | 0/52(0%) | Minus/Plus |
Query 460 NNTTLMVRHWLFCAYMSVRPKQRFGAWFNFAIARISSLQFFLNCKIMTQGRQ 615 N +TLMVRHW F + ++ ++ +F +I++ F LN KI+++ ++ Subject 2847 NLSTLMVRHWGFLLWYHLKGGKQRAGFFTSIHLKIANANFMLNGKILSETKR 3002
Penicillium aurantiogriseum fusarivirus 1 174 kDa protein and 53 kDa protein genes, complete cds
Range 1: 3227 to 3415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 34/63(54%) | 0/63(0%) | Minus/Plus |
Query 46 VSAPTGSGKSTGFIQHLYLVAGHRFRKIVVVEPRTLLVHGLTNFMKSAYGLDCSGATTGLKLD 234 + APTG+GKST I + G KIVV+ PRT+L GLT +MKS +G D SG+TTGL LD Subject 3227 IVAPTGTGKSTAMIGYFRQQLGGTCPKIVVIVPRTILAVGLTTYMKSIWGDDISGSTTGLTLD 3415
Range 2: 2843 to 3001 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 18/53(34%) | 0/53(0%) | Minus/Plus |
Query 460 CNNTTLMVRHWLFCAYMSVRPKQRFGAWFNFAIARISSLQFFLNCKIMTQGRQ 618 CN T L++RHWLF Y RP R F ++++++ QF +N + + Q Subject 2843 CNKTELLIRHWLFLLYCRWRPTTRAVRLLGFIVSKVANWQFGINGVVQFEAAQ 3001