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Nucleotide Sequence (218 letters)

Query ID:ds2016-56_135
Query definition:No definition line
Query length:156
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
22
44
66
88
110
132
154
176
198
218

Descriptions

Alignments

Grapevine leafroll associated virus isolate KHCP2 coat protein gene, complete cds

Sequence ID: GQ865602.1 Length: 1428 Number of Matches: 7

Range 1: 115 to 327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 65/71(92%) 0/71(0%) Plus/Minus
Query        6  RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH  218
                RCS SCCGEYV F HYSDS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH
Subject    115  RCSQSCCGEYVFFGHYSDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH  327

Range 2: 117 to 302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 60/62(97%) 0/62(0%) Plus/Minus
Query       31  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF  216
                NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF
Subject    117  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF  302

Range 3: 116 to 328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 66/71(93%) 0/71(0%) Plus/Minus
Query        5  PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS  217
                PL* KLLWRIR F ALQRF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS
Subject    116  PL*PKLLWRIRIFRALQRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS  328

Range 4: 116 to 328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 65/71(92%) 0/71(0%) Minus/Plus
Query        5  *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR  217
                *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ESL*C K+TYSPQQL LQR
Subject    116  *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESL*CPKNTYSPQQLWLQR  328

Range 5: 115 to 303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.1 bits(301) 0.0 61/63(97%) 0/63(0%) Minus/Plus
Query       30  VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  218
                VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF
Subject    115  VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  303

Range 6: 195 to 329 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 41/45(91%) 0/45(0%) Minus/Plus
Query        4  GCGTRKI**GEFLKVR*GRDTGGINRNRCSAGKVRIRHSSFSYSG  138
                GCGTRKI**GEFLKVR*GRDTGGIN NRCSA K+RIRHSSF YSG
Subject    195  GCGTRKI**GEFLKVR*GRDTGGINGNRCSARKIRIRHSSFGYSG  329

Range 7: 117 to 161 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      172  ERDGI*TEIRADI*S  216
                ERDGI*TEIRADI*S
Subject    117  ERDGI*TEIRADI*S  161

Grapevine leafroll associated virus 3 isolate SK04 HSP90 like protein gene, partial cds; coat protein, divergent coat protein, and 21 kDa protein genes, complete cds; and 19.6 kDa protein gene, partial cds

Sequence ID: JQ267586.1 Length: 3477 Number of Matches: 7

Range 1: 230 to 442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.2 bits(339) 0.0 64/71(90%) 0/71(0%) Plus/Minus
Query        6  RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH  218
                RCS SCCGEYV+F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH
Subject    230  RCSQSCCGEYVIFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH  442

Range 2: 231 to 443 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.9 bits(312) 0.0 65/71(92%) 0/71(0%) Plus/Minus
Query        5  PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS  217
                PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS
Subject    231  PL*PKLLWRIRNFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS  443

Range 3: 232 to 417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 59/62(95%) 0/62(0%) Plus/Minus
Query       31  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF  216
                NT FSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF
Subject    232  NT*FSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF  417

Range 4: 231 to 443 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 64/71(90%) 0/71(0%) Minus/Plus
Query        5  *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR  217
                *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K TYSPQQL LQR
Subject    231  *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKITYSPQQLWLQR  443

Range 5: 230 to 418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.8 bits(296) 0.0 60/63(95%) 0/63(0%) Minus/Plus
Query       30  VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  218
                VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPE YVF
Subject    230  VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPENYVF  418

Range 6: 310 to 444 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 40/45(89%) 0/45(0%) Minus/Plus
Query        4  GCGTRKI**GEFLKVR*GRDTGGINRNRCSAGKVRIRHSSFSYSG  138
                GCGTRKI**GEFLKVR*GRDTGGIN NR SA K+RIRHSSF YSG
Subject    310  GCGTRKI**GEFLKVR*GRDTGGINGNRRSARKLRIRHSSFGYSG  444

Range 7: 232 to 276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      172  ERDGI*TEIRADI*S  216
                ERDGI*TEIRADI*S
Subject    232  ERDGI*TEIRADI*S  276

Grapevine leafroll associated virus 3 isolate 6 6 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds

Sequence ID: HQ130295.1 Length: 4711 Number of Matches: 7

Range 1: 108 to 320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 64/71(90%) 0/71(0%) Plus/Minus
Query        6  RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH  218
                RCS SCCGEYV F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH
Subject    108  RCSQSCCGEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH  320

Range 2: 110 to 295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 60/62(97%) 0/62(0%) Plus/Minus
Query       31  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF  216
                NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF
Subject    110  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF  295

Range 3: 109 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 65/71(92%) 0/71(0%) Plus/Minus
Query        5  PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS  217
                PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS
Subject    109  PL*PKLLWRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS  321

Range 4: 109 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 64/71(90%) 0/71(0%) Minus/Plus
Query        5  *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR  217
                *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K+TYSPQQL LQR
Subject    109  *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSPQQLWLQR  321

Range 5: 108 to 296 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.1 bits(301) 0.0 61/63(97%) 0/63(0%) Minus/Plus
Query       30  VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  218
                VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF
Subject    108  VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  296

Range 6: 188 to 322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 40/45(89%) 0/45(0%) Minus/Plus
Query        4  GCGTRKI**GEFLKVR*GRDTGGINRNRCSAGKVRIRHSSFSYSG  138
                GCGTRKI**GEFLKVR*GRDTGGIN NR SA K+RIRHSSF YSG
Subject    188  GCGTRKI**GEFLKVR*GRDTGGINGNRRSARKIRIRHSSFGYSG  322

Range 7: 110 to 154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      172  ERDGI*TEIRADI*S  216
                ERDGI*TEIRADI*S
Subject    110  ERDGI*TEIRADI*S  154

Grapevine leafroll associated virus 3 isolate 6 18 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds

Sequence ID: HQ130300.1 Length: 4711 Number of Matches: 7

Range 1: 108 to 320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 64/71(90%) 0/71(0%) Plus/Minus
Query        6  RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH  218
                RCS SCCGEYV F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH
Subject    108  RCSQSCCGEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH  320

Range 2: 110 to 295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 60/62(97%) 0/62(0%) Plus/Minus
Query       31  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF  216
                NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF
Subject    110  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF  295

Range 3: 109 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 65/71(92%) 0/71(0%) Plus/Minus
Query        5  PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS  217
                PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS
Subject    109  PL*PKLLWRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS  321

Range 4: 109 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 64/71(90%) 0/71(0%) Minus/Plus
Query        5  *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR  217
                *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K+TYSPQQL LQR
Subject    109  *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSPQQLWLQR  321

Range 5: 108 to 296 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.1 bits(301) 0.0 61/63(97%) 0/63(0%) Minus/Plus
Query       30  VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  218
                VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF
Subject    108  VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  296

Range 6: 188 to 322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 40/45(89%) 0/45(0%) Minus/Plus
Query        4  GCGTRKI**GEFLKVR*GRDTGGINRNRCSAGKVRIRHSSFSYSG  138
                GCGTRKI**GEFLKVR*GRDTGGIN NR SA K+RIRHSSF YSG
Subject    188  GCGTRKI**GEFLKVR*GRDTGGINGNRRSARKIRIRHSSFGYSG  322

Range 7: 110 to 154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      172  ERDGI*TEIRADI*S  216
                ERDGI*TEIRADI*S
Subject    110  ERDGI*TEIRADI*S  154

Grapevine leafroll associated virus 3 isolate 6 102 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds

Sequence ID: HQ130301.1 Length: 4711 Number of Matches: 7

Range 1: 108 to 320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 64/71(90%) 0/71(0%) Plus/Minus
Query        6  RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH  218
                RCS SCCGEYV F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH
Subject    108  RCSQSCCGEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH  320

Range 2: 110 to 295 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 60/62(97%) 0/62(0%) Plus/Minus
Query       31  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF  216
                NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF
Subject    110  NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF  295

Range 3: 109 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 65/71(92%) 0/71(0%) Plus/Minus
Query        5  PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS  217
                PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS
Subject    109  PL*PKLLWRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS  321

Range 4: 109 to 321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 64/71(90%) 0/71(0%) Minus/Plus
Query        5  *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR  217
                *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K+TYSPQQL LQR
Subject    109  *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSPQQLWLQR  321

Range 5: 108 to 296 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.1 bits(301) 0.0 61/63(97%) 0/63(0%) Minus/Plus
Query       30  VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  218
                VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF
Subject    108  VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF  296

Range 6: 188 to 322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 40/45(89%) 0/45(0%) Minus/Plus
Query        4  GCGTRKI**GEFLKVR*GRDTGGINRNRCSAGKVRIRHSSFSYSG  138
                GCGTRKI**GEFLKVR*GRDTGGIN NR SA K+RIRHSSF YSG
Subject    188  GCGTRKI**GEFLKVR*GRDTGGINGNRRSARKIRIRHSSFGYSG  322

Range 7: 110 to 154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      172  ERDGI*TEIRADI*S  216
                ERDGI*TEIRADI*S
Subject    110  ERDGI*TEIRADI*S  154