Queries
Nucleotide Sequence (415 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
263.2 | 1353.7 | 30% | 9.213e-70 | 74% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 1439 to 1804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.2 bits(568) | 0.0 | 116/122(95%) | 0/122(0%) | Plus/Plus |
Query 50 LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK 415 L D+QGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGEL+YGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK Subject 1439 LWDIQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELFYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK 1804
Range 2: 1424 to 1804 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 105/127(83%) | 0/127(0%) | Minus/Minus |
Query 35 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ 415 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQP PILI++ QL+R+LTSK+ VRKRHVN RQPPP*N HIVP NF+RY D PFNETKN LT TPVAGQQPLVTKF GEKTLPLNIP*P TQ Subject 1424 LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPTPILITIKQLTRVLTSKEQVRKRHVNTHRQPPP*NAHIVPYNFKRYGDNCPFNETKNIPLT*TPVAGQQPLVTKFRGEKTLPLNIP*PPRTQ 1804
Range 3: 1422 to 1802 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
239.8 bits(517) | 0.0 | 102/127(80%) | 0/127(0%) | Plus/Plus |
Query 33 CWVCLG*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS 413 C V G G+FKGNVFSP+NFVTSGC*PATGV VR FFVSLKG S YL KL GTIC FYGGGCLW FTWRFLT LDVR R SC ISIG GC+WQF*TATIFWPALSRAVLVCGS*SECCALTS Subject 1422 CCVRGGYGIFKGNVFSPRNFVTSGC*PATGVQVRGMFFVSLKGQLSPYLLKL*GTICAFYGGGCLWVFTWRFLTCSLDVRTRVSCFMVISIGVGCSWQF*TATIFWPALSRAVLVCGS*SECCALTS 1802
Range 4: 1438 to 1803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 115/122(94%) | 0/122(0%) | Minus/Minus |
Query 49 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS 414 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASC+QHQYLSP* SSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT LLPELQSRVNNHL*QNFGVKKHCP* S S Subject 1438 LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCNQHQYLSP*NSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLLPELQSRVNNHL*QNFGVKKHCP*ISHS 1803
Range 5: 1422 to 1751 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 81/110(74%) | 0/110(0%) | Minus/Minus |
Query 33 RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLAQTHPT 362 RKSRPKDCCRSELP A +TNTY TA P PHI*+ SEEAPRK P+AASAIE AYRT *L EV+R LQRNKK SY NSSRGSTTTCDKI G*KNIALE+P+A + T Subject 1422 RKSRPKDCCRSELPAATNTNTYHHKTAHPCPHI*RASEEAPRKHPQAASAIERAYRTL*LQEVRR*LPLQRNKKHTSYLNSSRGSTTTCDKISG*KNIALEYPIAAPNAT 1751
Range 6: 1438 to 1668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 59/77(77%) | 0/77(0%) | Plus/Plus |
Query 49 AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG 279 A G SRAMFFHP+ILSQVVVDPRLEF *E+ FLFR*R R TS SY VRYA SMAEAA G LRGASSL *M*G+G Subject 1438 AMGYSRAMFFHPEILSQVVVDPRLEFR*EVCFLFR*RGSYRRTS*SYKVRYARSMAEAACGCLRGASSLAL*M*GHG 1668
Nucleotide Sequence (327 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
235.2 | 1279.5 | 28% | 1.62e-61 | 88% | NC_016509 | |
152.7 | 198.2 | 34% | 1.109e-36 | 55% | NC_003604 | |
121.6 | 121.6 | 33% | 2.657e-27 | 54% | NC_018458 | |
118.4 | 118.4 | 32% | 2.454e-26 | 48% | NC_004667 | |
75.8 | 113.0 | 27% | 5.692e-19 | 41% | NC_022072 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 5331 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 95/107(89%) | 0/107(0%) | Plus/Minus |
Query 3 SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RML 323 SPGS R HHHHPEDARQ LPSYSTAL*SEPDHSNL *QR HQMCSISHHQHETRS*HPFCTSVSSND +SHPISVPPEAHQAL S PDSRANHHYR FGCTC RML Subject 5331 SPGSSRRHHHHPEDARQSLPSYSTAL*SEPDHSNLR*QRSHQMCSISHHQHETRS*HPFCTSVSSNDHNSHPISVPPEAHQALYSNPDSRANHHYRHTFGCTCCRML 5651
Range 2: 5327 to 5653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.5 bits(488) | 0.0 | 104/109(95%) | 0/109(0%) | Minus/Plus |
Query 1 EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 327 +VAF+SK SRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGE+VEHLLGDGDVFVMSPGM Subject 5327 DVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGM 5653
Range 3: 5332 to 5652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.0 bits(487) | 0.0 | 97/107(91%) | 0/107(0%) | Minus/Plus |
Query 2 SILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD 322 SILQQVQPK+ L*WWFARESG+E SA**ASGGTEIG*EL SLLDTEVQKGCYDRVSC***EMLHIWC+RCH KFEWSGSL*SAVE*DGR CRASSG*W*C+R+EPGD Subject 5332 SILQQVQPKVCL*WWFARESGLE*SA**ASGGTEIG*EL*SLLDTEVQKGCYDRVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGD 5652
Range 4: 5330 to 5653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.8 bits(482) | 0.0 | 95/108(88%) | 0/108(0%) | Plus/Minus |
Query 1 HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECY 324 HPRAH+E ITITQKMLDNLSRLIRPHSKASLTIQIY DNA+TRCVAFLIISMKPDRSTL VLLYQAMI+ LIQFQFLPKLIKRF+P+LTRVRTTIID+ SA LA ECY Subject 5330 HPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKPDRSTLSVLLYQAMIITLIQFQFLPKLIKRFIPTLTRVRTTIIDIPSAVLAVECY 5653
Range 5: 5331 to 5651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 96/107(90%) | 0/107(0%) | Minus/Plus |
Query 3 *HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG 323 *HS+AS AE SIMVVRTRVR G KRLMSFGRN*NWMR IIA*YRST+RVLRSGFMLMMRNATHLV*ALS *I*MVRLALECGRIRRERLSSIFWVMVM S**ARG Subject 5331 *HSTASTAEGMSIMVVRTRVRVGIKRLMSFGRN*NWMRVMIIA*YRSTERVLRSGFMLMMRNATHLV*ALSP*I*MVRLALECGRIRRERLSSIFWVMVMSS**ARG 5651
Range 6: 5455 to 5652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 64/66(97%) | 0/66(0%) | Plus/Minus |
Query 2 IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 199 IPGLIT TSPSPRRCST SPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ Subject 5455 IPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ 5652
Range 1: 1902 to 2228 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 68/109(62%) | 0/109(0%) | Minus/Plus |
Query 1 EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 327 EVAF+S+ S+ Y YNGGSH S GW++AL+EL +EL LD+SYDHCLIQ+Y G +IGFHADDE CY G SVVTVNL+G A F V+ N++G++ + L DGDV+VM PGM Subject 1902 EVAFYSRHSKEYKYNGGSHRSLGWDEALNELTQELGLDDSYDHCLIQRYTAGGSIGFHADDEPCYLPGGSVVTVNLHGDATFEVKENQSGKIEKKELHDGDVYVMGPGM 2228
Range 1: 1942 to 2262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 58/107(54%) | 0/107(0%) | Minus/Plus |
Query 1 AFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM 321 AF+SK S Y Y GGSH SQG ++L ELR + L E YDHCL+QKY+K I FHADDEKCY G VVT+N++G A F ++ N EV L DGDV VM G+ Subject 1942 AFYSKYSTGYTYTGGSHISQGMPESLVELRRSMGLGEEYDHCLVQKYEKDGAIPFHADDEKCYLPGSCVVTLNMHGTAEFMLKENGKEEVHRVTLEDGDVLVMPEGV 2262
Grapevine leafroll-associated virus 3, complete genome
Range 1: 4851 to 5165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 50/105(48%) | 0/105(0%) | Minus/Plus |
Query 4 FFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPG 318 FFSK Y YNGGSH S GW +AL+++ +K +DHCL+QKYK G + FHADDE+CY S ++TVNL G+A F + K G+V+ + GD F+M G Subject 4851 FFSKLGEGYTYNGGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCG 5165
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 6002 to 6205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 28/68(41%) | 0/68(0%) | Minus/Plus |
Query 4 YDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPG 207 +DHCL+Q+Y G +IGFHAD+E+CY ++TVN+ G A F+ +++ DVFVM G Subject 6002 FDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQG 6205
Nucleotide Sequence (525 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
393.3 | 2046.2 | 26% | 8.651e-109 | 88% | NC_016509 | |
161.9 | 161.9 | 32% | 3.927e-39 | 39% | NC_004667 | |
173.4 | 173.4 | 30% | 1.398e-42 | 43% | NC_029783 | |
139.4 | 139.4 | 26% | 2.253e-32 | 40% | NC_022072 | |
111.0 | 111.0 | 25% | 8.031e-24 | 36% | NC_016417 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2423 to 2932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
393.3 bits(852) | 0.0 | 165/170(97%) | 0/170(0%) | Minus/Plus |
Query 16 VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG 525 VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG Subject 2423 VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG 2932
Range 2: 2423 to 2932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.2 bits(795) | 0.0 | 153/170(90%) | 0/170(0%) | Plus/Minus |
Query 16 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH 525 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDV PE+TYNLLHGMSVSIAY S SIHYHIA SHHFHTQFWYS*AAVSGCQLYW+HQAQLEYFY+ LL*CL QF+NI*V+DVNH+TN RFMITKA V LAVR+VLR LFLKH Subject 2423 TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKH 2932
Range 3: 2424 to 2930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
348.8 bits(755) | 0.0 | 150/169(89%) | 0/169(0%) | Plus/Minus |
Query 18 HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A 524 HQQSPVS*P+YVP* +STLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERR SR+NL*SSARNE KHRL L QYTLSHR FAPLPHPVLV*LGCRLWLSALL TSSTTRIFL SSLVL PI+KHLS RRQP*NQ LYDHKSACP GST*CSS+PLS*A Subject 2424 HQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*CSSQPLS*A 2930
Range 4: 2424 to 2933 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 152/170(89%) | 0/170(0%) | Minus/Plus |
Query 15 CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV 524 CLRKR RRT RTA WT AFVIIKR+LV WLTS T*MF NW KH*RR+ *KYSSCA*C Q*S*QPETAA*LYQNWVWKWCE+AM**CIL E *AMLTLIPCRRL*V SG TSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRR LRDIVWL*YRRLLMV Subject 2424 CLRKRLRRTSRTAKWTRAFVIIKRQLVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMV 2933
Range 5: 2425 to 2931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.9 bits(718) | 0.0 | 149/169(88%) | 0/169(0%) | Minus/Plus |
Query 17 A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W 523 A*ERG EEH+VLP GHALL*S*S WF+G*RL LRCF IG STREE +KNIRVVLDV NRADSQRRQPNYTRTGCGSGAK RCDNVYCRR RRCL SFRAEDYKF RE RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVD *GT* GYDTGDC*W Subject 2425 A*ERGCEEHHVLPNGHALL*S*SASWFHG*RLRLRCF*IGASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*W 2931
Range 6: 2722 to 2931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 67/70(96%) | 0/70(0%) | Plus/Minus |
Query 17 PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 226 PSAISGIIT+LCPL VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC Subject 2722 PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC 2931
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1845 to 2348 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 66/168(39%) | 0/168(0%) | Minus/Plus |
Query 22 VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIA 525 +L + A+K+++YC + + CD +A GFMVDVYD+ ++A+A++KK +F++ LMFP+EL +G + + EL V R+GD + Y VG G+ Y HS + FF + V+ SG+ F +EY GYR GYH ++C + + R + SF G SLV IP +A Subject 1845 LLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVA 2348
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 2976 to 3455 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.4 bits(372) | 0.0 | 69/160(43%) | 0/160(0%) | Minus/Plus |
Query 31 AAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIP 510 A+K T+C D R C K GFMVDVYDL +E+A++L K ++ F++ M P+EL ARDGS TI EL V RKGD++ Y+VGG GD+Y HS QK+ S V A++ EY+GYR GYH + + A ++TR++ T+ G ++V P Subject 2976 ASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAP 3455
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2564 to 2971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 54/136(40%) | 0/136(0%) | Minus/Plus |
Query 118 VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSL 525 ++ + A+++I+YC + C + G+MVDVYDL ELA+AL+ K + IF+LC M P+EL A G + + EL V R GD ++Y+VG G++Y H ++ S+ S + SG+ + VEY GYR+GYH ++ Subject 2564 IISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTV 2971
Grapevine leafroll-associated virus 6, complete genome
Range 1: 2277 to 2666 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 47/130(36%) | 0/130(0%) | Minus/Plus |
Query 112 NITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCV 501 NIT+C + C ++ MVDVYDL VF L +A+EK+ I C MFP EL +RDG + P V V R G V+ Y++ D+Y H + ++SF ++ ++ SG +SVE + Y F + + Subject 2277 NITFCHNTVPNCSVRSTAVIMVDVYDLSVFSLVKAMEKEGALIARCCFMFPPELISRDGIVVHPATNVVVTRNGRVLKYSIANTSDSYTHDLNNVLSFVTTSSLRSESGLVYSVELLNQNGPYMDFQVAL 2666
Nucleotide Sequence (435 letters)
Query ID: | ds2016-133_36 |
Query definition: | No definition line |
Query length: | 384 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
219.6 | 1197.4 | 22% | 1.248e-56 | 80% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 1, complete genome
Range 1: 4223 to 4534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 95/104(91%) | 0/104(0%) | Minus/Plus |
Query 10 LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL 321 +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKG SRAA L Subject 4223 VARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASL 4534
Range 2: 4225 to 4530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 92/102(90%) | 0/102(0%) | Plus/Minus |
Query 14 MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA 319 +AALL PFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAAAVRH V*TFNESP MYPISST PDTRSLNSA A Subject 4225 LAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALA 4530
Range 3: 4226 to 4528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 84/101(83%) | 0/101(0%) | Plus/Minus |
Query 16 GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR 318 G PT TFLC QRQTR YAHQF+SPAI ASFDTPQCRYP+SDAPYIPEPLRR+*YKNR FLIAR**ICG RKA GLN+QR+AV VPHL H SRH IFKFSPR Subject 4226 GCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPR 4528
Range 4: 4218 to 4529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.7 bits(423) | 0.0 | 88/104(85%) | 0/104(0%) | Plus/Minus |
Query 15 WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP 326 W PYLHLSL+STP+T LRPSISKPCHTRLL*YTSMPLS IRRSLYT*TA*A+VI ES ISHSSMIDMR P*GTRSE ST+RR CTPS PRIQT DL*IQP+L P Subject 4218 WLPYLHLSLQSTPNTRLRPSISKPCHTRLL*YTSMPLSRIRRSLYT*TA*ARVI*ESPISHSSMIDMRRP*GTRSERSTSRRKCTPSLPRIQTRDL*IQPSLPP 4529
Range 5: 4224 to 4529 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.1 bits(415) | 0.0 | 85/102(83%) | 0/102(0%) | Minus/Plus |
Query 15 *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP 320 *RGLNLKI CLD+W+RWGT+TA R* FRP ALR PHIYHRAMRN+RFLYY RLSGSGI*GASD G*RH*GVSKEA MAGL N*WA* RVWR* QRKV VG P Subject 4224 *RGLNLKIACLDTWKRWGTFTATR*TFRPCALRPPHIYHRAMRNRRFLYYSRLSGSGI*GASDTG*RH*GVSKEASMAGLRN*WA*PRVWR*LQRKVQVGQP 4529
Range 6: 4372 to 4524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 46/51(90%) | 0/51(0%) | Minus/Plus |
Query 20 TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*G 172 T A*AVQVYRERRI DSGIEVYQRRRVWQGFEIDGRS V GVD KERCK*G Subject 4372 TRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*G 4524