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Queries

Nucleotide Sequence (756 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
76
152
228
304
380
456
532
608
684
756

Descriptions

Alignments

Sclerotinia sclerotiorum botybirnavirus 2 segment RNA 2, complete sequence

Sequence ID: KT962973.1 Length: 5872 Number of Matches: 3

Range 1: 1390 to 1656 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 32/89(36%) 0/89(0%) Plus/Plus
Query       34  VPTSISYMCMITRNSITGNRLASENEQRADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEIT  300
                V   I Y    TR +      A+        ++F A F K K+   EF  A  IK   GDNH+AFL  A ++VL++KQA E  A  +I+
Subject   1390  VTRGIGYNIASTRAADLAKTAATRGASVPTAKEFTAYFDKLKQWPVEFEKARDIKATPGDNHIAFLVLAKSRVLALKQAAEQGAIAKIS  1656

Range 2: 1906 to 2112 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 17/69(25%) 0/69(0%) Plus/Plus
Query      550  VPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSLLCT  756
                +PYF  I +      +IP CN+   I +      ++ L +G+ +     Y+K   +  Q  +A  +L T
Subject   1906  IPYFATIKSDATGYYKIPACNAIEEISLNTLGATEVTLTVGLAEYVLNEYIKRMGIETQYTVASQILLT  2112

Range 3: 1702 to 1866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 19/55(35%) 0/55(0%) Plus/Plus
Query      337  EEDARASTSAQLAKQLASPWLKDQGRELHELILPSAAANAEEILMLLYLMGAMDN  501
                + + R +TS+ +   L    +   G    ++ILPS AA AEE+++L YL G  D+
Subject   1702  KSNPRGTTSSGIMDGLIRMMVNIVGGSGSDIILPSEAATAEELIVLGYLCGFFDD  1866

Sclerotinia sclerotiorum botybirnavirus 1 segment 2, complete sequence

Sequence ID: KP774593.1 Length: 5965 Number of Matches: 2

Range 1: 1183 to 1416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 31/78(40%) 0/78(0%) Plus/Plus
Query      112  QRADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEITIDRDIYNNLIVLEED  345
                QR D R+F+A F + K    EF   G+ K   GDNHVA+LT A+ ++L++KQA E  +   I +   I N   +  ED
Subject   1183  QRVDSREFQARFDEMKGFPIEFRLGGTAKSVDGDNHVAWLTIAILRLLALKQAQETNSRGHIEMTSGIANQFGINLED  1416

Range 2: 1639 to 1854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 20/72(28%) 0/72(0%) Plus/Plus
Query      532  DHPMTIVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSL  747
                D  + I P +  I +   + ++IP  N+   I M         +ELG  +  F SYV+   L +Q+N+A+ +
Subject   1639  DEELGIQPMYSAIRSSATERMKIPFVNASRAISMNDLKKFNADIELGRAEAVFNSYVRRHELQSQVNVARRI  1854

Sclerotinia sclerotiorum botybirnavirus 1 segment 2, complete sequence

Sequence ID: NC_027139.1 Length: 5965 Number of Matches: 2

Range 1: 1183 to 1416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 31/78(40%) 0/78(0%) Plus/Plus
Query      112  QRADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEITIDRDIYNNLIVLEED  345
                QR D R+F+A F + K    EF   G+ K   GDNHVA+LT A+ ++L++KQA E  +   I +   I N   +  ED
Subject   1183  QRVDSREFQARFDEMKGFPIEFRLGGTAKSVDGDNHVAWLTIAILRLLALKQAQETNSRGHIEMTSGIANQFGINLED  1416

Range 2: 1639 to 1854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 20/72(28%) 0/72(0%) Plus/Plus
Query      532  DHPMTIVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSL  747
                D  + I P +  I +   + ++IP  N+   I M         +ELG  +  F SYV+   L +Q+N+A+ +
Subject   1639  DEELGIQPMYSAIRSSATERMKIPFVNASRAISMNDLKKFNADIELGRAEAVFNSYVRRHELQSQVNVARRI  1854

Botrytis porri RNA virus 1 RNA 2, complete genome

Sequence ID: NC_017991.1 Length: 5879 Number of Matches: 2

Range 1: 1539 to 1679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 19/47(40%) 0/47(0%) Plus/Plus
Query      157  KRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEI  297
                K++  E+Y AG++K Q GDNH+  L Q L  + S++QA+E  + C +
Subject   1539  KKVPSEWYKAGNVKAQFGDNHIGMLVQWLIMLWSVRQAEEQGSTCHV  1679

Range 2: 1923 to 2138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 21/72(29%) 0/72(0%) Plus/Plus
Query      541  MTIVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSLLCT  756
                ++IVP +    T + + LRIPLCNS   + +      +  +  G L+     YV+   L +QL+ A+ + C+
Subject   1923  LSIVPTYYTYQTDIREYLRIPLCNSLKALSLVDLSENEYLMTSGGLECIIIDYVRRMGLQDQLHNAQLIACS  2138

Soybean leaf associated botybirnavirus 1 isolate SaBRV1 1 segment RNA1, partial sequence

Sequence ID: KT598233.1 Length: 3667 Number of Matches: 3

Range 1: 848 to 1027 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 24/60(40%) 0/60(0%) Plus/Plus
Query      115  RADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCE  294
                R D R+F++ F + K L  EF  AG+ K   G+NHVA L  A+  +  +KQA E    C+
Subject    848  RPDEREFQSRFDEMKNLPSEFRLAGNAKSVSGENHVAMLVMAMRGIFMLKQAQEQGVRCK  1027

Range 2: 1316 to 1519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 23/68(34%) 0/68(0%) Plus/Plus
Query      547  IVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSLL  750
                +VP+F  I T    L+RIPL NS   I  +   G    LE+G  +     Y+   +L  Q+ +A+ LL
Subject   1316  MVPFFAHIKTGATSLMRIPLSNSLRPIPPSTINGWSGYLEVGRAEAVLNHYIVRMDLQKQVPVARELL  1519

Range 3: 1202 to 1279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 12/26(46%) 0/26(0%) Plus/Plus
Query      424  ELILPSAAANAEEILMLLYLMGAMDN  501
                E++LPS  A AEE++ L +L G +D+
Subject   1202  EMVLPSHVATAEEVVYLAFLTGHLDD  1279

Nucleotide Sequence (345 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
345

Descriptions

Alignments

Sclerotinia sclerotiorum botybirnavirus 2 segment RNA 1, complete sequence

Sequence ID: KT962972.1 Length: 6159 Number of Matches: 1

Range 1: 2195 to 2530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 38/112(34%) 0/112(0%) Plus/Plus
Query        3  EQMMPIVATSWMLNLMSLDVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLTANYNERPLRFSSYLYLEDQP  338
                E  M ++A S +L+  + + L E++    E  G +  S +F A     LGD LP GLSH T+PV  KL+     D+   I    +     L   +N R  R SSY+ L++QP
Subject   2195  ESYMALIAASTILSRSAEEALLEAIIFTAESAGYSPFSFSFKAVIDQFLGDSLPWGLSHATIPVFSKLMDLDLNDLVLCIDRHMVGCISKLLLGFNNRLFRASSYMMLKEQP  2530

Botrytis porri RNA virus 1 RNA 1, complete genome

Sequence ID: NC_017990.1 Length: 6215 Number of Matches: 1

Range 1: 2483 to 2731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 28/83(34%) 0/83(0%) Plus/Plus
Query       48  MSLDVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLTANYNER  296
                M+ +VL +S+ +   E G+  ++  +       LG  L  G +HL MP+VEKLLG+ FP++ QY+    L L    T    +R
Subject   2483  MAEEVLTDSIVSTVVEAGIEYTNPAYTGTVEQELGRHLYHGYAHLIMPIVEKLLGDTFPELTQYLADSVLALEHCTTGRDLDR  2731

Botrytis porri RNA virus 1 strain GarlicBc 72 segment 1, complete sequence

Sequence ID: JF716350.1 Length: 6215 Number of Matches: 1

Range 1: 2483 to 2731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 28/83(34%) 0/83(0%) Plus/Plus
Query       48  MSLDVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLTANYNER  296
                M+ +VL +S+ +   E G+  ++  +       LG  L  G +HL MP+VEKLLG+ FP++ QY+    L L    T    +R
Subject   2483  MAEEVLTDSIVSTVVEAGIEYTNPAYTGTVEQELGRHLYHGYAHLIMPIVEKLLGDTFPELTQYLADSVLALEHCTTGRDLDR  2731

Uncultured totivirus genomic RNA containing putative RdRp, contig 406.2Pv1_454_1

Sequence ID: HE579577.1 Length: 3628 Number of Matches: 1

Range 1: 653 to 874 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 21/74(28%) 0/74(0%) Plus/Plus
Query       57  DVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLT  278
                +VL +S+ +     G+  +   + A     LG  L  G +H+  PV+E+LL ++FP++ Q++    L L +  T
Subject    653  EVLTDSIVSATTAAGIPYTHPAYKATVEQELGRHLYNGYAHMIQPVIEQLLQDQFPELTQFLSDSVLALEKCTT  874

Uncultured totivirus genomic RNA containing putative RdRp, contig 95.1Hv1_454_1

Sequence ID: HE579658.1 Length: 2684 Number of Matches: 1

Range 1: 165 to 371 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 25/69(36%) 0/69(0%) Plus/Plus
Query       57  DVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLEL  263
                +VL + + +     G+  ++  F A     LG  L +G +H+  PVVEKLLGEKFP++ Q++    L L
Subject    165  EVLTDGIISAATAAGITYTNPAFKATIEQELGRHLSQGYAHMIQPVVEKLLGEKFPELTQFLSDSVLAL  371

Nucleotide Sequence (637 letters)

Query ID:ds2016-58_48
Query definition:No definition line
Query length:589
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 3 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
64
128
192
256
320
384
448
512
576
637

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
84.5 84.5 18% 1.49e-14 33% KT962973.1
72.5 72.5 15% 5.748e-11 32% NC_017991.1
72.5 72.5 15% 5.748e-11 32% JF716351.1

Alignments

Sclerotinia sclerotiorum botybirnavirus 2 segment RNA 2, complete sequence

Sequence ID: KT962973.1 Length: 5872 Number of Matches: 1

Range 1: 3472 to 3810 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 37/113(33%) 0/113(0%) Minus/Plus
Query      246  IHESFDEIDVPGDGRCGIRALHQGMVLKNQTKSLSELMQMEATMFGGVSNRLPRDTHVDDGAMALMADKLGYHLIVLEQESIDSTSLNTVRYHKNDDKAEREVLFVKIIGNHW  584
                + E F+E DVPGDGRCG+ ALH+ + L        EL +MEA +      + P+   V D  +A++ADKL Y  + + +E  +  +  +++   N+D   R+V+ +     HW
Subject   3472  LEEDFEETDVPGDGRCGMSALHKSLELMGIPIGKKELFEMEAEILQLKGKKAPKTLWVSDVTIAMVADKLDYDTVFVFREGGNGDTYTSLKTFTNEDAPPRQVVPIAGEVGHW  3810

Botrytis porri RNA virus 1 RNA 2, complete genome

Sequence ID: NC_017991.1 Length: 5879 Number of Matches: 1

Range 1: 3492 to 3770 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 30/93(32%) 0/93(0%) Minus/Plus
Query      312  RAIHESFDEIDVPGDGRCGIRALHQGMVLKNQTKSLSELMQMEATMFGGVSNRLPRDTHVDDGAMALMADKLGYHLIVLEQESIDSTSLNTVR  590
                R +++    +   GDGRCG+RALH  MV K    SL+E+ ++EA + G    R+ +     D  +AL+A + GY L++ ++ + +  +++ VR
Subject   3492  RGLYDHIKVVPTIGDGRCGVRALHAQMVAKGDMISLTEVYEVEAQVCGLEERRVAKQIWATDEVLALVARQYGYSLVMYQESNDEDPTIDKVR  3770

Botrytis porri RNA virus 1 strain GarlicBc 72 segment 2, complete sequence

Sequence ID: JF716351.1 Length: 5879 Number of Matches: 1

Range 1: 3492 to 3770 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 30/93(32%) 0/93(0%) Minus/Plus
Query      312  RAIHESFDEIDVPGDGRCGIRALHQGMVLKNQTKSLSELMQMEATMFGGVSNRLPRDTHVDDGAMALMADKLGYHLIVLEQESIDSTSLNTVR  590
                R +++    +   GDGRCG+RALH  MV K    SL+E+ ++EA + G    R+ +     D  +AL+A + GY L++ ++ + +  +++ VR
Subject   3492  RGLYDHIKVVPTIGDGRCGVRALHAQMVAKGDMISLTEVYEVEAQVCGLEERRVAKQIWATDEVLALVARQYGYSLVMYQESNDEDPTIDKVR  3770