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Queries

Nucleotide Sequence (312 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
312

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
154.6 314.8 52% 2.861e-37 34% NC_033277
155.0 322.1 34% 2.083e-37 34% NC_007539
77.1 77.1 31% 5.855e-14 35% NC_009947
57.4 98.4 36% 1.157e-14 35% NC_005978

Alignments

Isaria javanica chrysovirus 1 isolate IjCV-1 RNA-dependent RNA polymerase (RdRp) gene, complete cds

Sequence ID: Length: 3593 Number of Matches: 3

Range 1: 1411 to 1719 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.6 bits(331) 0.0 62/103(60%) 0/103(0%) Minus/Plus
Query        1  VNFSAWSDLMKSLHSYVRCSRFLMNTEISEQDRQALMYLDLNVGRGEYQIDEMAEVTVRSAETYSSKHLSYDSDLKLFTNEQYVTDFSRGIQLAHMRIKHNPK  309
                V+F  WSD +KSLHS VRCSRFLMNTEI+E++RQ LMY+DL VGRGEY+IDEM EV  R  + Y +KHLSYD   K +TN+QY  DF   +  AH+R+K  P+
Subject   1411  VSFRNWSDRLKSLHSLVRCSRFLMNTEITEEERQGLMYMDLLVGRGEYKIDEMNEVRARYGDGYGTKHLSYDPVTKAYTNKQYKKDFELALDAAHLRLKVTPR  1719

Range 2: 1410 to 1715 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 55/102(54%) 0/102(0%) Plus/Minus
Query        5  GLCLMRMWASCIPRLKSVTYCSFVNSLRSESYDKCFDE*VSALLTVTSAISSIWYSPRPTLRSRYISACLSCSLISVFMRNLLHRT*ECRLFIRSDHALKFT  310
                G+   R  A+     KS  YC FV +L + SYD+C     S  L +TS ISSI YSPRPT RS YI  CLS S+ISVFMRNLL RT E R F  SD  LK T
Subject   1410  GVTFKRRCAASSASSKSFLYCLFVYALVTGSYDRCLVPYPSPYLALTSFISSILYSPRPTSRSIYIKPCLSSSVISVFMRNLLQRTSEWRDFNLSDQFLKLT  1715

Range 3: 1417 to 1626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 24/70(34%) 0/70(0%) Plus/Minus
Query       94  VI*QVLR*ISLGASDRDFSHLIDLVLASPNVEV*IHQCLSVLLANLCIHEESAASDVRVQALHQIRPRTE  303
                ++*Q+   + +     DF H ++ V    +  + IHQ LS+L  N C+HEESA +   V+ L  +RP  E
Subject   1417  IV*QMFGAVPVSIPGSDFIHFVNFVFTPTDE*IHIHQALSLLFCNFCVHEESATAH**VEGL*PVRPVPE  1626

Penicillium chrysogenum virus segment 1, complete genome

Sequence ID: Length: 3562 Number of Matches: 3

Range 1: 1396 to 1689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 60/98(61%) 0/98(0%) Minus/Plus
Query        1  WSDLMKSLHSYVRCSRFLMNTEISEQDRQALMYLDLNVGRGEYQIDEMAEVTVRSAETYSSKHLSYDSDLKLFTNEQYVTDFSRGIQLAHMRIKHNPK  294
                WSD MK+LHS VRCS+F MNT I+E+DRQALMY+DL VGRGEY +DEMAEV +R+ +TY++KHLSYD + ++FTN+QY  DF   ++ A++R+K  PK
Subject   1396  WSDKMKTLHSLVRCSKFFMNTRITEKDRQALMYMDLLVGRGEYTVDEMAEVELRTDDTYNTKHLSYDPNRQVFTNQQYKKDFITSVEEAYVRLKIEPK  1689

Range 2: 1392 to 1685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 52/98(53%) 0/98(0%) Plus/Minus
Query        5  GLCLMRMWASCIPRLKSVTYCSFVNSLRSESYDKCFDE*VSALLTVTSAISSIWYSPRPTLRSRYISACLSCSLISVFMRNLLHRT*ECRLFIRSDHA  298
                G  L R +AS    +KS  YC  V + R  SYD+CF  *VS++ + TSAISS  YSPRPT +S YI AC S S+I VFM+NLL RT E  +FI SD +
Subject   1392  GSILSRTYASSTDVMKSFLYCWLVKTCRFGSYDRCFVL*VSSVRSSTSAISSTVYSPRPTSKSIYIKACRSFSVILVFMKNLLQRTSEWSVFILSDQS  1685

Range 3: 1396 to 1677 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 32/94(34%) 0/94(0%) Plus/Minus
Query       13  FDAHVGQLYPPAEVCNILFIRKQFEI*VI*QVLR*ISLGASDRDFSHLIDLVLASPNVEV*IHQCLSVLLANLCIHEESAASDVRVQALHQIRP  294
                F  HV       E+  +L + +   + V+ QV R + + ++  DF HLI+ +L+ P  ++ IHQ L +L     IHEE AA++  V+ LH I P
Subject   1396  FKPHVCLFNGRDEILLVLLVSEDLPVWVVRQVFRIVGIISAQFDFCHLINGILSPPYQQIHIHQGLPILFCYPSIHEEFAATNQ*VECLHLI*P  1677

Amasya cherry disease associated chrysovirus segment 1, complete sequence

Sequence ID: Length: 3399 Number of Matches: 1

Range 1: 1260 to 1553 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 34/98(35%) 0/98(0%) Minus/Plus
Query        1  WSDLMKSLHSYVRCSRFLMNTEISEQDRQALMYLDLNVGRGEYQIDEMAEVTVRSAETYSSKHLSYDSDLKLFTNEQYVTDFSRGIQLAHMRIKHNPK  294
                W    K +H  +R SR  MNTE+ +Q +Q++MY+D  VGR  ++ D   EV  R      ++H++YD +   +  EQY  DF+  +  A  R+K  P+
Subject   1260  WVYCQKMVHDLMRQSRHYMNTEVEQQTKQSIMYMDQLVGRRLFKPDWQKEVDDRQGNHGFAQHMAYDPNTGTWEVEQYRKDFNHALNDAFARVKSAPR  1553

Helminthosporium victoriae 145S virus

Sequence ID: Length: 3612 Number of Matches: 2

Range 1: 1447 to 1671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 26/75(35%) 0/75(0%) Minus/Plus
Query        1  SEQDRQALMYLDLNVGRGEYQIDEMAEVTVRSAETYSSKHLSYDSDLKLFTNEQYVTDFSRGIQLAHMRIKHNPK  225
                SE+ RQ++MYLD  +GR  +  DE AE+   +  +    H+SYD  ++ ++ EQY  DF   ++  H+ +   PK
Subject   1447  SEEHRQSMMYLDCLLGRRIFIADEDAEIKDGTGSSGGMTHMSYDPVVRRWSVEQYRKDFMFALENLHIGMIEKPK  1671

Range 2: 1360 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 15/37(41%) 0/37(0%) Minus/Plus
Query      199  VNFSAWSDLMKSLHSYVRCSRFLMNTEISEQDRQALM  309
                VNF+ W  +MK  HS VR + ++MNT+I  ++ +  M
Subject   1360  VNFTWWKVVMKEFHSLVRINDYVMNTKIESEEHRQSM  1470

Nucleotide Sequence (492 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
492

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
96.4 96.4 31% 1.884e-19 31% NC_033317
101.4 101.4 29% 5.727e-21 34% NC_007540
52.4 99.3 28% 1.227e-14 31% NC_009946
64.3 119.4 29% 1.348e-20 35% NC_005979

Alignments

Isaria javanica chrysovirus 1 isolate IjCV-1 capsid protein (CP) gene, complete cds

Sequence ID: Length: 3175 Number of Matches: 1

Range 1: 1050 to 1505 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 47/152(31%) 0/152(0%) Plus/Plus
Query       33  RMAADNMLASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLVHTILAEQHKSDKLPDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKIDDGD  488
                R+  + + AS+M YA D    G L++A VIACS+ +N+Y +++ LP VVS  DL+    ++       P ++    R VGR+HQM     I+D L AA+++T  G   + ++R YL +    +++    ++ + L   T  M   +++D  D
Subject   1050  RLTPNLIYASMMTYAMDTGCTGHLQQALVIACSLQQNRYFSKVKLPKVVSVYDLMVPAFSQPTSKLDKPILSLPMARSVGRLHQMLAFTAIRDNLTAAELSTSAGFDPEVSMRAYLKSQGLIVSRMSSFISELSLLEATSSMKIHDQLDVAD  1505

Penicillium chrysogenum virus segment 2, complete genome

Sequence ID: Length: 3200 Number of Matches: 1

Range 1: 1094 to 1525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 49/144(34%) 0/144(0%) Plus/Plus
Query       57  ASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLVHTILAEQHKSDKLPDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKIDDGD  488
                +SI+ YA D S    L+EA +IACS+ EN+Y ++I LPTVVS  DL+      Q+ + +   ++    + VGR+HQM  ++  KD++ A  + ++ G      IR YL +++  + +   +L GI L+  TP M   +++D  D
Subject   1094  SSILTYAMDTSCTDLLQEAQIIACSLQENRYFSRIGLPTVVSLYDLMVPAFIAQNSALEGARLSGDLSKAVGRVHQMLGMVAAKDIISATHMQSRTGFDPSHGIRQYLNSNSRLVTQMASKLTGIGLFDATPQMRIFSEMDTAD  1525

Amasya cherry disease associated chrysovirus segment 2, complete sequence

Sequence ID: Length: 3128 Number of Matches: 2

Range 1: 1170 to 1421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 26/84(31%) 0/84(0%) Plus/Plus
Query      237  PDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKIDDGD  488
                P V       +G++HQM++LL+IKDV+ AAKV+T+           +L N+   +++       + L   TP M W   I+  D
Subject   1170  PHVNKETLATIGKLHQMSLLLMIKDVIIAAKVSTRSELDYRRVAMQWLNNYDMLMSRYNVNATALKLVEATPQMKWSYLINRDD  1421

Range 2: 987 to 1145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 19/53(36%) 0/53(0%) Plus/Plus
Query       57  ASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLVHTILAE  215
                ++++KYAA+      LE A V+A S+  N+YL +++LP+V S  +L+   + E
Subject    987  SALVKYAAEVGSPNDLEPAMVVASSMYHNRYLQKVSLPSVSSVNELIMPAMVE  1145

Helminthosporium victoriae 145S virus

Sequence ID: Length: 3134 Number of Matches: 2

Range 1: 1371 to 1613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 28/81(35%) 0/81(0%) Plus/Plus
Query      237  PDVTPGFCRIVGRMHQMTMLLLIKDVLHAAKVTTKQGHSADATIRGYLANHTPALNKAGCQLAGIPLWLMTPGMLWVNKID  479
                P V       +G++HQM M L IKD+L AA+ +TK G +  + +  YL      ++     +  + L  MTP M W+ KID
Subject   1371  PSVAKELAISIGKLHQMCMFLTIKDILVAARGSTKAGFNYSSVVESYLTTQEEVVSVMNASVTPLRLLEMTPQMKWMYKID  1613

Range 2: 1140 to 1328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 22/63(35%) 0/63(0%) Plus/Plus
Query        9  GVNSHFSCRMAADNMLASIMKYAADFSLQGSLEEAFVIACSINENKYLTQIALPTVVSKVDLV  197
                G + ++   +    ++ASI +YA +  +   LE A V A S+  N+YL ++ LP VVS +DL+
Subject   1140  GSSVNYHVELTPQMVMASITQYATESGIADELESALVCASSLYHNRYLARVGLPRVVSSIDLI  1328