Nucleotide Sequence (305 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
92.3 | 160.2 | 26% | 2.097e-17 | 46% | EF152346.1 | |
102.8 | 231.4 | 31% | 1.41e-20 | 40% | JQ045335.1 | |
95.9 | 150.1 | 24% | 1.653e-18 | 43% | KP782031.1 | |
92.3 | 149.2 | 20% | 2.097e-17 | 50% | HM004067.2 | |
91.3 | 147.4 | 25% | 3.959e-17 | 43% | GQ290650.1 |
Alignments
Fusarium oxysporum chrysovirus 1 putative RNA polymerase gene, partial cds
Sequence ID: EF152346.1 Length: 2574 Number of Matches: 2
Range 1: 1753 to 1983 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 39/77(51%) | 0/77(0%) | Plus/Plus |
Query 74 QVIREFASIPTAPSDYAMFADVIASRMYDMWLVDGEGNKHELSNGLFSGRRGTTWINSVLNNVYIIVAMECFALLYG 304 QVIR+ + AP DYA+F I+ MY M +VD +G +H GL+SG RGTTWIN+VLN VY A F LYG Subject 1753 QVIRKLEFVVDAPKDYALFVSAISEAMYHMVIVDPDGKQHPAGRGLYSGWRGTTWINTVLNCVYTNTAEASFERLYG 1983
Range 2: 1755 to 1982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 35/76(46%) | 0/76(0%) | Minus/Minus |
Query 76 PYNNAKHSMATMIYTLFNTELIQVVPRLPENRPFDNSCLLPSPSTSHMSYILLAITSANIA*SEGAVGMLANSLIT 303 PY+ +K + A ++YT FNT LI VVP PE P C LPS ST M YI + N A*S GA +N IT Subject 1755 PYSRSKLASAVLVYTQFNTVLIHVVPLQPEYSPLPAGCCLPSGSTITMWYIASDMAETNRA*SLGASTTNSNFRIT 1982
Raphanus sativas chrysovirus 1 segment RNA1 putative RNA dependent RNA polymerase gene, complete cds
Sequence ID: JQ045335.1 Length: 3638 Number of Matches: 3
Range 1: 2204 to 2431 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 38/76(50%) | 0/76(0%) | Plus/Plus |
Query 74 QVIREFASIPTAPSDYAMFADVIASRMYDMWLVDGEGNKHELSNGLFSGRRGTTWINSVLNNVYIIVAMECFALLY 301 +VI+ A IP P DY+ F IA Y MW++D +G+KHE+ GLFSG RGTTWIN+VLN+VY+ + + C +Y Subject 2204 KVIQYLARIPGCPEDYSTFCCAIADSFYHMWVIDPDGDKHEIKKGLFSGWRGTTWINTVLNHVYVAIGVMCCERIY 2431
Range 2: 2203 to 2430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 37/76(49%) | 0/76(0%) | Minus/Minus |
Query 73 YNNAKHSMATMIYTLFNTELIQVVPRLPENRPFDNSCLLPSPSTSHMSYILLAITSANIA*SEGAVGMLANSLITW 300 Y ++H YT FNT LIQVVPR PEN PF SCL PS S +HM L AI + *S G G+ A IT+ Subject 2203 YILSQHITPIATYTWFNTVLIQVVPRQPENSPFLISCLSPSGSITHMW*KLSAIAQQKVE*SSGQPGIRARYCITF 2430
Range 3: 2240 to 2410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 23/57(40%) | 0/57(0%) | Minus/Minus |
Query 110 HGYNDIHVVQHRVNPGSSSPS*K*TV*QLMLVTFSIYQPHVIHPACYHIGKHRIVRR 280 H Y +HVVQH V+P +P+*+*+ LM + IY PHV+ CY + I+ R Subject 2240 HSYCHVHVVQHCVDPSCPTPT*E*SFLNLMFIAVWIYHPHVVETICYSAAESGIILR 2410
Brassica campestris chrysovirus 1 isolate Hubei segment RNA1, complete sequence
Sequence ID: KP782031.1 Length: 3639 Number of Matches: 2
Range 1: 2223 to 2450 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.9 bits(203) | 0.0 | 37/76(49%) | 0/76(0%) | Plus/Plus |
Query 74 QVIREFASIPTAPSDYAMFADVIASRMYDMWLVDGEGNKHELSNGLFSGRRGTTWINSVLNNVYIIVAMECFALLY 301 +VI IP P DY F IA Y MW++D +G KH++ GLFSG RGTTWIN+VLN VY+ V + C +Y Subject 2223 KVIAMLEKIPGVPEDYGYFCHAIAESFYHMWVIDPKGGKHKIEKGLFSGWRGTTWINTVLNFVYVSVGVMCCERIY 2450
Range 2: 2225 to 2440 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 31/72(43%) | 0/72(0%) | Minus/Minus |
Query 76 AKHSMATMIYTLFNTELIQVVPRLPENRPFDNSCLLPSPSTSHMSYILLAITSANIA*SEGAVGMLANSLIT 291 ++H T T F+T LIQVVP PEN PF CL P S +H+ L AI *S G G+ +N IT Subject 2225 SQHITPTDT*TKFSTVLIQVVPLQPENSPFSILCLPPFGSITHI**KLSAIA*QKYP*SSGTPGIFSNIAIT 2440
Verticillium dahliae chrysovirus 1 segment 1, complete sequence
Sequence ID: HM004067.2 Length: 3594 Number of Matches: 2
Range 1: 1181 to 1408 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 40/76(53%) | 0/76(0%) | Plus/Minus |
Query 77 VIREFASIPTAPSDYAMFADVIASRMYDMWLVDGEGNKHELSNGLFSGRRGTTWINSVLNNVYIIVAMECFALLYG 304 VI E PSDYA F ++S MYDM L D EG +H+L GLFSG RGTTWIN+VLN Y +A+ + LYG Subject 1181 VIAELEHTVEGPSDYAYFVQAVSSSMYDMQLQDREGKRHKLWKGLFSGWRGTTWINTVLNFCYSNIALMNYQRLYG 1408
Range 2: 1230 to 1409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 30/60(50%) | 0/60(0%) | Minus/Plus |
Query 76 FNTELIQVVPRLPENRPFDNSCLLPSPSTSHMSYILLAITSANIA*SEGAVGMLANSLIT 255 F T LI VVP PEN PF + CLLPS S + +SYI L A*S G + +NS IT Subject 1230 FKTVLIHVVPLHPENNPFHSLCLLPSLSCNCISYIELLTACTK*A*SLGPSTVCSNSAIT 1409
Cryphonectria nitschkei chrysovirus 1 from Cryphonectria nitschkei bs131 RNA dependent RNA polymerase gene, complete cds
Sequence ID: GQ290650.1 Length: 2889 Number of Matches: 2
Range 1: 2008 to 2235 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 39/76(51%) | 0/76(0%) | Plus/Plus |
Query 77 VIREFASIPTAPSDYAMFADVIASRMYDMWLVDGEGNKHELSNGLFSGRRGTTWINSVLNNVYIIVAMECFALLYG 304 VI+E AP DY +F I+ MY+M L D +GN+H++ GL+SG RGTTWINSVLN YI VA+ F +YG Subject 2008 VIKELDLAVQAPEDYHIFVHAISESMYNMSLHDRDGNRHKIWRGLYSGWRGTTWINSVLNFCYIDVALTSFERIYG 2235
Range 2: 2007 to 2234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 33/76(43%) | 0/76(0%) | Minus/Minus |
Query 76 PYNNAKHSMATMIYTLFNTELIQVVPRLPENRPFDNSCLLPSPSTSHMSYILLAITSANIA*SEGAVGMLANSLIT 303 PY +K AT + F TELI VVP PE +P C LPS S M YI + N+ *S GA +NSL+T Subject 2007 PYIRSKLVKATSM*QKFRTELIHVVPLHPEYKPRHILCRLPSLSCKLMLYIDSLMACTNM**SSGACTARSNSLMT 2234