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Nucleotide Sequence (304 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
31
62
93
124
155
186
217
248
279
304

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
48.7 97.4 9% 0.0002608 74% LT837585.1

Alignments

Bovine viral diarrhea virus 1 genome assembly, chromosome: viral_cRNA

Sequence ID: LT837585.1 Length: 12295 Number of Matches: 2

Range 1: 12150 to 12230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 21/27(78%) 0/27(0%) Plus/Plus
Query      219  HPTHCGDRKSVV*GKSVDLGGRHIIKK  299
                H  H  DRKSVV*G SVDLGGR IIKK
Subject  12150  HSLHTADRKSVV*GPSVDLGGRRIIKK  12230

Range 2: 12149 to 12229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 20/27(74%) 0/27(0%) Minus/Minus
Query      218  FLMMWRPPRSTLFPYTTLFRSPQCVGC  298
                FLM+ RPPRSTL PYTTLFRS  C  C
Subject  12149  FLMIRRPPRSTLGPYTTLFRSAVCNEC  12229