Nucleotide Sequence (385 letters)
Query ID: | ds2016-133_14 |
Query definition: | No definition line |
Query length: | 603 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
122.0 | 685.2 | 31% | 1.431e-37 | 50% | KX171166.1 | |
122.0 | 685.2 | 31% | 1.431e-37 | 50% | NC_030693.1 | |
109.7 | 697.5 | 23% | 4.636e-39 | 68% | KX109927.1 | |
109.2 | 470.9 | 24% | 1.968e-25 | 72% | KX828704.1 | |
84.9 | 473.3 | 28% | 1.881e-25 | 49% | KX171167.1 |
Alignments
Grapevine Red Globe virus isolate Graciano T101, complete genome
Sequence ID: KX171166.1 Length: 6863 Number of Matches: 10
Range 1: 189 to 332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 41/48(85%) | 0/48(0%) | Plus/Plus |
Query 236 MASFTKLAISFPASSVPYSEEFPNHSFWSTPGSNVFTPYPNMTPTNFP 379 MAS KLAISFPASSVPYS+EFP+HSFW+TPGSN FTPYP+MTPTNFP Subject 189 MASSNKLAISFPASSVPYSKEFPDHSFWATPGSNDFTPYPSMTPTNFP 332
Range 2: 1 to 69 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 23/23(100%) | 0/23(0%) | Plus/Plus |
Query 48 VYLNQPHLDSGYLAHIRDLTCPC 116 VYLNQPHLDSGYLAHIRDLTCPC Subject 1 VYLNQPHLDSGYLAHIRDLTCPC 69
Range 3: 78 to 119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 125 RQVSFSLFSSQP*R 166 RQVSF LFS QP*R Subject 78 RQVSFFLFSFQP*R 119
Range 4: 3 to 122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 36/40(90%) | 0/40(0%) | Minus/Minus |
Query 50 NALRLRREKGKGDLSKLKQGQVRSRM*AR*PESR*GWLRY 169 NALRL+REK + DLSKLKQGQVRSRM*AR*PESR*GWLRY Subject 3 NALRLKREKEERDLSKLKQGQVRSRM*AR*PESR*GWLRY 122
Range 5: 179 to 292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 32/38(84%) | 0/38(0%) | Minus/Minus |
Query 226 TFEPGVDQKEWLGNSSE*GTDEAGKEMASLVKEAIEDT 339 +FEPGV QKEW GNS E*GTDEAGKEMASL++EAIEDT Subject 179 SFEPGVAQKEWSGNSLE*GTDEAGKEMASLLEEAIEDT 292
Range 6: 1 to 330 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 83/110(75%) | 0/110(0%) | Minus/Minus |
Query 48 GSWWGSCWDRG*KHSNRGWTRRNGWGIPRSKEXXXXXXXXXXXXXRPLRIRVGEGKGKRRRIGSERTLXXXXXXXXXXXXXRLVEAEARTS*ITNVSKITRIEMRLVEIH 377 G+WWGS R * HSNR RRNG GIP SKERM++G+KWRA +RPL+IRV EGK R + SERTLRERAKAEKRKG++RLVEAEARTS*ITNVSKITRIEMRLVEIH Subject 1 GNWWGSWRGRE*NHSNRELPRRNGRGIPWSKERMRQGKKWRACWRRPLKIRVSEGKRIRIKRRSERTLRERAKAEKRKGRKRLVEAEARTS*ITNVSKITRIEMRLVEIH 330
Range 7: 125 to 331 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/69(67%) | 0/69(0%) | Plus/Plus |
Query 172 RNVXXXXXXXXXXXXXXTRILNGLFHQARHFLPRFIRSLLRGIPQPFLLVHPRFECFHPLSQHDPHQLP 378 RNVLSL + +L FPS TRI NGL QARHF P IRSLL+GIP+PFLL + RFE FH L HDPHQ P Subject 125 RNVLSLLLFILILFPSLTRIFNGLLQQARHFFPCLIRSLLQGIPRPFLLGNSRFE*FHSLPLHDPHQFP 331
Range 8: 3 to 32 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 10/10(100%) | 0/10(0%) | Plus/Plus |
Query 50 VSQPASSRFW 79 VSQPASSRFW Subject 3 VSQPASSRFW 32
Grapevine Red Globe virus isolate Graciano T101, complete genome
Sequence ID: NC_030693.1 Length: 6863 Number of Matches: 10
Range 1: 189 to 332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 41/48(85%) | 0/48(0%) | Plus/Plus |
Query 236 MASFTKLAISFPASSVPYSEEFPNHSFWSTPGSNVFTPYPNMTPTNFP 379 MAS KLAISFPASSVPYS+EFP+HSFW+TPGSN FTPYP+MTPTNFP Subject 189 MASSNKLAISFPASSVPYSKEFPDHSFWATPGSNDFTPYPSMTPTNFP 332
Range 2: 1 to 69 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 23/23(100%) | 0/23(0%) | Plus/Plus |
Query 48 VYLNQPHLDSGYLAHIRDLTCPC 116 VYLNQPHLDSGYLAHIRDLTCPC Subject 1 VYLNQPHLDSGYLAHIRDLTCPC 69
Range 3: 78 to 119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 125 RQVSFSLFSSQP*R 166 RQVSF LFS QP*R Subject 78 RQVSFFLFSFQP*R 119
Range 4: 3 to 122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 36/40(90%) | 0/40(0%) | Minus/Minus |
Query 50 NALRLRREKGKGDLSKLKQGQVRSRM*AR*PESR*GWLRY 169 NALRL+REK + DLSKLKQGQVRSRM*AR*PESR*GWLRY Subject 3 NALRLKREKEERDLSKLKQGQVRSRM*AR*PESR*GWLRY 122
Range 5: 179 to 292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 32/38(84%) | 0/38(0%) | Minus/Minus |
Query 226 TFEPGVDQKEWLGNSSE*GTDEAGKEMASLVKEAIEDT 339 +FEPGV QKEW GNS E*GTDEAGKEMASL++EAIEDT Subject 179 SFEPGVAQKEWSGNSLE*GTDEAGKEMASLLEEAIEDT 292
Range 6: 1 to 330 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 83/110(75%) | 0/110(0%) | Minus/Minus |
Query 48 GSWWGSCWDRG*KHSNRGWTRRNGWGIPRSKEXXXXXXXXXXXXXRPLRIRVGEGKGKRRRIGSERTLXXXXXXXXXXXXXRLVEAEARTS*ITNVSKITRIEMRLVEIH 377 G+WWGS R * HSNR RRNG GIP SKERM++G+KWRA +RPL+IRV EGK R + SERTLRERAKAEKRKG++RLVEAEARTS*ITNVSKITRIEMRLVEIH Subject 1 GNWWGSWRGRE*NHSNRELPRRNGRGIPWSKERMRQGKKWRACWRRPLKIRVSEGKRIRIKRRSERTLRERAKAEKRKGRKRLVEAEARTS*ITNVSKITRIEMRLVEIH 330
Range 7: 125 to 331 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/69(67%) | 0/69(0%) | Plus/Plus |
Query 172 RNVXXXXXXXXXXXXXXTRILNGLFHQARHFLPRFIRSLLRGIPQPFLLVHPRFECFHPLSQHDPHQLP 378 RNVLSL + +L FPS TRI NGL QARHF P IRSLL+GIP+PFLL + RFE FH L HDPHQ P Subject 125 RNVLSLLLFILILFPSLTRIFNGLLQQARHFFPCLIRSLLQGIPRPFLLGNSRFE*FHSLPLHDPHQFP 331
Range 8: 3 to 32 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 10/10(100%) | 0/10(0%) | Plus/Plus |
Query 50 VSQPASSRFW 79 VSQPASSRFW Subject 3 VSQPASSRFW 32
Grapevine Red Globe virus isolate Graciano T90, complete genome
Sequence ID: KX109927.1 Length: 6863 Number of Matches: 10
Range 1: 189 to 332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 41/48(85%) | 0/48(0%) | Plus/Plus |
Query 236 MASFTKLAISFPASSVPYSEEFPNHSFWSTPGSNVFTPYPNMTPTNFP 379 MASFTKLAI+FPASSVPYS++FPNHSFW+ PGSN FTPYP MTPTNFP Subject 189 MASFTKLAITFPASSVPYSKDFPNHSFWAIPGSNDFTPYPTMTPTNFP 332
Range 2: 1 to 69 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 23/23(100%) | 0/23(0%) | Plus/Plus |
Query 48 VYLNQPHLDSGYLAHIRDLTCPC 116 VYLNQPHLDSGYLAHIRDLTCPC Subject 1 VYLNQPHLDSGYLAHIRDLTCPC 69
Range 3: 78 to 119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 13/14(93%) | 0/14(0%) | Plus/Plus |
Query 125 RQVSFSLFSSQP*R 166 RQVSFSLFS QP*R Subject 78 RQVSFSLFSFQP*R 119
Range 4: 3 to 122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 38/40(95%) | 0/40(0%) | Minus/Minus |
Query 50 NALRLRREKGKGDLSKLKQGQVRSRM*AR*PESR*GWLRY 169 NALRL+REKGK DLSKLKQGQVRSRM*AR*PESR*GWLRY Subject 3 NALRLKREKGKRDLSKLKQGQVRSRM*AR*PESR*GWLRY 122
Range 5: 179 to 292 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 31/38(82%) | 0/38(0%) | Minus/Minus |
Query 226 TFEPGVDQKEWLGNSSE*GTDEAGKEMASLVKEAIEDT 339 +FEPG+ QKEWLG S E*GTDEAGK MASLVKEAI+DT Subject 179 SFEPGIAQKEWLGKSLE*GTDEAGKVMASLVKEAIDDT 292
Range 6: 1 to 192 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 54/64(84%) | 0/64(0%) | Minus/Minus |
Query 48 PLRIRVGEGKGKRRRIGSERTLXXXXXXXXXXXXXRLVEAEARTS*ITNVSKITRIEMRLVEIH 239 PL IRV E + RR+ SERTLRERAKAEKRKGK+RLVEAEARTS*ITNVSKITRIEMRLVEIH Subject 1 PLMIRVSERRRIRRKRRSERTLRERAKAEKRKGKKRLVEAEARTS*ITNVSKITRIEMRLVEIH 192
Range 7: 238 to 330 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 21/31(68%) | 0/31(0%) | Minus/Minus |
Query 285 GSWWGSCWDRG*KHSNRGWTRRNGWGIPRSK 377 GSWWGS + * HSNRG RRNGWG P SK Subject 238 GSWWGSWLGKE*NHSNRGLPRRNGWGSPWSK 330
Range 8: 125 to 331 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 49/69(71%) | 0/69(0%) | Plus/Plus |
Query 172 RNVXXXXXXXXXXXXXXTRILNGLFHQARHFLPRFIRSLLRGIPQPFLLVHPRFECFHPLSQHDPHQLP 378 RNVLSL + LL S TRI+NGLFHQARH LPR IR LL+G+PQPFLL +PRFE FH L HDPHQLP Subject 125 RNVLSLLLFLLILLLSLTRIINGLFHQARHHLPRLIRPLLQGLPQPFLLGNPRFE*FHSLPNHDPHQLP 331
Grapevine Red Globe virus isolate CF BR replicase polyprotein and coat protein genes, complete cds
Sequence ID: KX828704.1 Length: 6574 Number of Matches: 8
Range 1: 99 to 242 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 41/48(85%) | 0/48(0%) | Plus/Plus |
Query 236 MASFTKLAISFPASSVPYSEEFPNHSFWSTPGSNVFTPYPNMTPTNFP 379 MASFTKLAISFPASSVP+S+EFPNHSFW+ PGSN FTPYP MTPTN+P Subject 99 MASFTKLAISFPASSVPFSKEFPNHSFWAIPGSNDFTPYPTMTPTNYP 242
Range 2: 28 to 69 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.9 bits(61) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Plus |
Query 2 AFS*RPFASYPSPY 43 AFS*RPFA YP PY Subject 28 AFS*RPFALYPFPY 69
Range 3: 79 to 102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 7/8(88%) | 0/8(0%) | Plus/Plus |
Query 216 LTYSYPQW 239 LTY YPQW Subject 79 LTYPYPQW 102
Range 4: 35 to 241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 54/69(78%) | 0/69(0%) | Plus/Plus |
Query 172 RNVXXXXXXXXXXXXXXTRILNGLFHQARHFLPRFIRSLLRGIPQPFLLVHPRFECFHPLSQHDPHQLP 378 RNVLSL IL L PFPSPTRILNGLFHQARH LPR IRS L+GIP+ FLL H RFE HPL HDPHQLP Subject 35 RNVLSLSILFLIPFPSPTRILNGLFHQARHLLPRLIRSFLQGIPKSFLLGHSRFE*LHPLPHHDPHQLP 241
Range 5: 89 to 202 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 31/38(82%) | 0/38(0%) | Minus/Minus |
Query 226 TFEPGVDQKEWLGNSSE*GTDEAGKEMASLVKEAIEDT 339 +FEPG+ QKE GNS E GTDEAGKEMASLVKEAIEDT Subject 89 SFEPGMAQKE*FGNSLEKGTDEAGKEMASLVKEAIEDT 202
Range 6: 37 to 102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 19/22(86%) | 0/22(0%) | Minus/Minus |
Query 174 PLRIRVGEGKGKRRRIGSERTL 239 PLRIRVGEGKG R+RI SERTL Subject 37 PLRIRVGEGKGIRKRIESERTL 102
Grapevine Red Globe virus isolate Graciano T53, complete genome
Sequence ID: KX171167.1 Length: 6851 Number of Matches: 9
Range 1: 183 to 326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 32/48(67%) | 0/48(0%) | Plus/Plus |
Query 236 MASFTKLAISFPASSVPYSEEFPNHSFWSTPGSNVFTPYPNMTPTNFP 379 MA+ KLAIS PA+SVPYS++FP+HSFW+ P SN +P P MTPTNFP Subject 183 MAALNKLAISIPATSVPYSKDFPHHSFWTIPESNDISPLPLMTPTNFP 326
Range 2: 2 to 64 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 20/21(95%) | 0/21(0%) | Plus/Plus |
Query 54 LNQPHLDSGYLAHIRDLTCPC 116 LNQPHLDSGYLAHIRDLTC C Subject 2 LNQPHLDSGYLAHIRDLTCLC 64
Range 3: 1 to 108 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 29/36(81%) | 0/36(0%) | Minus/Minus |
Query 53 RLRREKGKGDLSKLKQGQVRSRM*AR*PESR*GWLR 160 + +REKG+ DLS+LKQ QVRSRM*AR*PESR*GWLR Subject 1 KAKREKGERDLSELKQRQVRSRM*AR*PESR*GWLR 108
Range 4: 179 to 286 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 20/36(56%) | 0/36(0%) | Minus/Minus |
Query 232 TFEPGVDQKEWLGNSSE*GTDEAGKEMASLVKEAIE 339 +F+ G+ QKEW G S E*GT+ AG EMASL++ A++ Subject 179 SFDSGMVQKEWWGKSLE*GTEVAGMEMASLLRAAMD 286
Range 5: 3 to 77 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 24/25(96%) | 0/25(0%) | Minus/Minus |
Query 55 CRS*SKDKLDHECEQDNQNRDEAG* 129 CRS*S+DKLDHECEQDNQNRDEAG* Subject 3 CRS*SRDKLDHECEQDNQNRDEAG* 77
Range 6: 232 to 285 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 11/18(61%) | 0/18(0%) | Minus/Minus |
Query 285 HSNRGWTRRNGWGIPRSK 338 HS W+RRNG G P SK Subject 232 HSILEWSRRNGGGSP*SK 285
Range 7: 179 to 325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 24/49(49%) | 0/49(0%) | Plus/Plus |
Query 232 LNGLFHQARHFLPRFIRSLLRGIPQPFLLVHPRFECFHPLSQHDPHQLP 378 ++G QARH PR + LL G+P PFLL H R E HDPHQ P Subject 179 IHGRPQQARHLHPRHLCPLL*GLPPPFLLDHSRIE*HLSSPSHDPHQFP 325