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Nucleotide Sequence (372 letters)

Query ID:ds2016-121_50
Query definition:No definition line
Query length:130
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
372

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
200.4 873.9 33% 8.432e-50 62% AF525933.1
50.1 50.1 26% 0.0001495 32% AY535016.1
50.1 50.1 26% 0.0001495 32% NC_006051.1

Alignments

Mirafiori lettuce big vein virus isolate LS301 O putative RNA polymerase and 25K protein genes, complete cds

Sequence ID: AF525933.1 Length: 7794 Number of Matches: 10

Range 1: 7108 to 7443 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.4 bits(431) 0.0 97/112(87%) 0/112(0%) Plus/Minus
Query        4  LLFAEKLDPPFNMKAVIIIETDQELVDVADFEGIEIILGNNIQSCLDSFYMHVYKEDXXXXXXXXXXXXXXDNFKIPKYFAKLDINQARLKKTIEKKYMSVIKTGKL*WFNK  339
                LLFAEKL PPFNMKA+IIIETDQELVDVADFEGIEI+LGNNIQSCLDSFYM  YKEDLIL NT  ELLLL DNFKIPKYFAKLD+NQ RLKK IEKKYMS+IK GKL* FNK
Subject   7108  LLFAEKLIPPFNMKAIIIIETDQELVDVADFEGIEILLGNNIQSCLDSFYMRFYKEDLILYNTANELLLLIDNFKIPKYFAKLDMNQVRLKKIIEKKYMSLIKAGKL*CFNK  7443

Range 2: 7246 to 7443 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 41/66(62%) 0/66(0%) Minus/Plus
Query        4  FSSSVEKYQVFFVDVHIK*IQARLNIVTKYDFYSLEVGNIN*FLICFDYYYRLHIKRRVQLLCKKQ  201
                F SSV KYQVFFV+ HIK*IQARLNIV K D YS +V N++*FL+ F+YYY  H+K   Q  C++Q
Subject   7246  FVSSVVKYQVFFVEAHIK*IQARLNIVPK*DLYSFKVSNVD*FLVRFNYYYCFHVKGWNQFFCEEQ  7443

Range 3: 7106 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 30/40(75%) 0/40(0%) Minus/Plus
Query      222  FLLNHQSFPVFITDMYFFSIVFFSLAWLISNLAKYFGILK  341
                FLL H SFP FI DMYFFSI+FF+    ISNLAKYFGILK
Subject   7106  FLLKH*SFPAFIKDMYFFSIIFFNRT*FISNLAKYFGILK  7225

Range 4: 7107 to 7442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 72/112(64%) 0/112(0%) Plus/Minus
Query        5  CFLQRSWTRLLI*RR***SKQIKN*LMLPTSRE*KSYLVTIFNLAWIHFICTSTKKT*YFSTLLENYFY*LTISRYQSILLN*ISTKQD*RKRLRKSTCL**KQENFDGLIK  340
                C  Q++    L *++*** K+ +N*  L T +E*+SYL TIF+LAWIHFIC STKKT*YF+TLL N + *L IS+YQ+ILLN*I  K D*RK LR+STCL**+QENF+ LIK
Subject   7107  CSSQKN*FHPLT*KQ***LKRTRN*STLLTLKE*RSYLGTIFSLAWIHFICASTKKT*YFTTLLTNCYC*LIISKYQNILLN*I*IKYD*RK*LRRSTCL**RQENFNALIK  7442

Range 5: 7106 to 7345 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 53/80(66%) 0/80(0%) Plus/Minus
Query      102  NRNHTW*QYSILLGFILYARLQRRLDTSQHYWRTTSTN*QFQDTKVFC*IRYQPSKTKEND*EKVHVCNKNRKTLMV**K  341
                NR+ TW QYS+LLGFILYA LQRR DT QH  RT + +* FQ+TK+FC*IRY+ S  +EN+*E+VHV +K RKTLM+**K
Subject   7106  NRDLTWEQYSVLLGFILYALLQRRPDTLQHC*RTATVD**FQNTKIFC*IRYESSTIEENN*EEVHVFDKGRKTLML**K  7345

Range 6: 7108 to 7233 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 28/42(67%) 0/42(0%) Minus/Plus
Query      214  FIKPSKFSCFYYRHVLFLNRFL*SCLVDI*FSKILWYLEIVS  339
                FIK  KFSC Y RHVL LN FL S L+ I*FSKI WY EI++
Subject   7108  FIKALKFSCLYQRHVLLLNYFLQSYLIHI*FSKIFWYFEIIN  7233

Range 7: 7281 to 7367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 19/29(66%) 0/29(0%) Minus/Plus
Query       80  CRRAYKMNPSKIEYCYQV*FLFPRSRQHQ  166
                CR AYKMNPSK EYC QV  LF +S+Q +
Subject   7281  CRSAYKMNPSKTEYCSQVRSLFLQSQQRR  7367

Range 8: 7400 to 7444 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 13/15(87%) 0/15(0%) Minus/Plus
Query        3  AFILKGGSNFSAKSN  47
                AF+LKGG NFSAKSN
Subject   7400  AFMLKGGINFSAKSN  7444

Range 9: 7101 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 27/42(64%) 0/42(0%) Minus/Plus
Query      221  IVFY*TIKVFLFLLQTCTFSQSFSLVLLG*YLI*QNTLVS*N  346
                + FY*+IKVFL L +TCT SQ FS ++L  YLI*QN LV *N
Subject   7101  LCFY*SIKVFLPLSKTCTSSQLFSSIVLDSYLI*QNILVF*N  7226

Range 10: 7268 to 7348 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 22/27(81%) 0/27(0%) Minus/Plus
Query       99  IKSSL*TCI*NESKQD*ILLPSMISIP  179
                I+SSL*  I*NESKQD*IL PS ISIP
Subject   7268  IRSSL*KRI*NESKQD*ILFPSKISIP  7348

Lettuce ring necrosis virus segment RNA 1, complete sequence

Sequence ID: AY535016.1 Length: 7651 Number of Matches: 1

Range 1: 7126 to 7410 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 30/95(32%) 0/95(0%) Plus/Minus
Query        4  LLFAEKLDPPFNMKAVIIIETDQELVDVADFEGIEIILGNNIQSCLDSFYMHVYKEDXXXXXXXXXXXXXXDNFKIPKYFAKLDINQARLKKTIE  288
                LL ++K+   F+ KAVIII+T    VDV  ++ I I L   I     S +  +YK D ++     ++  L + + IP Y   L   + R K+ +E
Subject   7126  LLTSDKVPRIFDKKAVIIIKTLNSFVDVVLYDDIFISLTQKICDIFTSLFFQLYKVDAMISFGDKKIYRLENGYTIPHYSMILSKEEERSKRNLE  7410

Lettuce ring necrosis virus RNA 1, complete genome

Sequence ID: NC_006051.1 Length: 7651 Number of Matches: 1

Range 1: 7126 to 7410 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 30/95(32%) 0/95(0%) Plus/Minus
Query        4  LLFAEKLDPPFNMKAVIIIETDQELVDVADFEGIEIILGNNIQSCLDSFYMHVYKEDXXXXXXXXXXXXXXDNFKIPKYFAKLDINQARLKKTIE  288
                LL ++K+   F+ KAVIII+T    VDV  ++ I I L   I     S +  +YK D ++     ++  L + + IP Y   L   + R K+ +E
Subject   7126  LLTSDKVPRIFDKKAVIIIKTLNSFVDVVLYDDIFISLTQKICDIFTSLFFQLYKVDAMISFGDKKIYRLENGYTIPHYSMILSKEEERSKRNLE  7410