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Queries

Nucleotide Sequence (459 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
46
92
138
184
230
276
322
368
414
459

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
335.1 1034.5 25% 2.352e-91 44% NC_007448
339.7 1271.1 27% 9.821e-93 56% NC_004724
167.4 295.1 30% 7.17e-41 27% NC_008366
123.9 265.0 30% 2.879e-40 31% NC_027712
139.4 300.3 28% 1.797e-48 43% NC_022978

Alignments

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 8

Range 1: 8104 to 8526 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
335.1 bits(725) 0.0 135/141(96%) 0/141(0%) Plus/Plus
Query       36  QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH  458
                QIHYIERN+LDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLS VY N+IATVKGESEGKSSMRINEINSVDDLVPD+GSTYLCMLQSEKLEISKHF+RKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH
Subject   8104  QIHYIERNDLDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH  8526

Range 2: 8088 to 8525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.4 bits(479) 0.0 115/146(79%) 0/146(0%) Minus/Minus
Query       20  CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTNXXXXXXXXXXXXXXSM**ICQPIPK  457
                CL+DLKGSSS*N + TRFTRAYVSP ASCTV+TLSLV PLR KCLLIS+FSD*S+H+ V+P SGTKSSTELISLMR+LL PSLSP TVAI L  T LNQA TSHGQR +TLP*TRHC+STNLSRSP +HLS SFLSM**IC+  PK
Subject   8088  CLIDLKGSSS*NLSRTRFTRAYVSPCASCTVRTLSLVKPLRMKCLLISNFSD*SIHRYVEPMSGTKSSTELISLMRMLLLPSLSPFTVAIRLPYTVLNQAHTSHGQRYETLP*TRHCKSTNLSRSPYKHLSKSFLSM**ICRLSPK  8525

Range 3: 8083 to 8526 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 70/148(47%) 0/148(0%) Minus/Minus
Query       15  VSNGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH  458
                V +  +RF+LLK + + +HTR+C  L L+H *NVKFS    N++ ANFQ   LKH QI   ++G  IV  +NF++AH AL+F      G+ + V+ A PSA IP TT+ ++T+N TLQVHEPI+I ++TL+++I FNVMNL    + H
Subject   8083  VPDRLKRFILLKLKSHKIHTRICLTLRLMHR*NVKFSQTLANEVLANFQLLRLKHTQIRGTHVGHQIVD*INFVNAHAALTFAFTLHGGDQIAVHCA*PSAHIPWTTV*NITINPTLQVHEPIEIPIQTLVQIIPFNVMNLPAITEDH  8526

Range 4: 8105 to 8509 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.5 bits(272) 0.0 69/135(51%) 0/135(0%) Plus/Plus
Query       37  RFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNL  441
                RFITLK M   SV   I IGSWTCNV F V    VV GM ALG*A  T  * P  + + K RA CA  KL + TI  P     IC CF+ ++WKLA+  F + *LNLTF* C R + +H RV*     +FRR NL
Subject   8105  RFITLKGMIWTSVCMGISIGSWTCNVGFMVMFHTVVHGMCALG*AQCTAI*SPP*RVKAKVRAACALTKLIQSTIWCPTWVPRICVCFNRRSWKLASTSFARV*LNLTF*RCMRRRVRHMRV*ILCDLSFRRMNL  8509

Range 5: 8105 to 8404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 47/100(47%) 0/100(0%) Minus/Minus
Query       37  EQNVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNES  336
                E + C*FP    EA T+     R  NR  +*F *CA CS+L     +W+S  R    TKR HP DN    Y K DIA PRTY+D   +T   H FQCNES
Subject   8105  E*SAC*FPTSPIEAYTDTWNPCRAPNRRLN*FR*CACCSYLRFHPSRWRSDCRTLCLTKRTHPMDNGMKHYHKPDIASPRTYRDPHTNTCPNHSFQCNES  8404

Range 6: 8444 to 8527 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 13/28(46%) 0/28(0%) Minus/Minus
Query      376  CV*WI*KVRPPEISTLLGSHARMFRLEP  459
                C *  *KV PPE      SHA M    P
Subject   8444  CA**T*KVHPPET*VAQDSHAHMSHPAP  8527

Range 7: 8283 to 8405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 18/41(44%) 0/41(0%) Plus/Plus
Query      215  RKEQYAHQ*N*LGGRFSPRCRVYLFVHASVRKTGN*QTFCS  337
                R EQ+AH  N*   RF  R   ++ V+AS+ + GN*Q   S
Subject   8283  R*EQHAH*RN*FSRRFGARHGFHVSVYASIGEVGN*QALHS  8405

Range 8: 8106 to 8219 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 21/38(55%) 0/38(0%) Plus/Plus
Query       38  DSLH*KK*A**VSLRRS**VRGPAMSCLR*RVLSLSVG  151
                DSLH*K+*   V +  S *VRG AMS L *  + LS+G
Subject   8106  DSLH*KE*FGQVFVWGSR*VRGLAMSGLW*CFIPLSMG  8219

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 9

Range 1: 8090 to 8512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
339.7 bits(735) 0.0 137/141(97%) 0/141(0%) Plus/Plus
Query       36  QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH  458
                QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDN+IATVKGESEGKSSMRINEINSVDDLVPD+GSTYLCMLQSEKLEISKHF+RKGL+KLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH
Subject   8090  QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINEINSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH  8512

Range 2: 8149 to 8511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
251.2 bits(542) 0.0 113/121(93%) 0/121(0%) Minus/Minus
Query       95  CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN  457
                CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSL SPLR KCLLIS+FSD*SMHK*V+P SGTKSSTELISLMR+LLFPSLSPLTVAI LS*TTLNQAQTSHGQR DTLP*TRHCRSTN
Subject   8149  CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLESPLRMKCLLISNFSD*SMHK*VEPISGTKSSTELISLMRMLLFPSLSPLTVAIMLS*TTLNQAQTSHGQRYDTLP*TRHCRSTN  8511

Range 3: 8069 to 8506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 82/146(56%) 0/146(0%) Minus/Minus
Query       15  NGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH  452
                +GF+R VLLKFQ + +H RVC  LSLVHG ++KF  PF ++M  +F    LKHAQ+SR +IGD*+VHRV+F++AH   SF    + G+HV++NNA P AD+P T + HVTV+TTLQV+EP+K+SVK L++ ISFN+MNLST  + H
Subject   8069  DGFKRLVLLKFQSHQIHARVCLTLSLVHGQDIKFREPFADEMLTDF*LLRLKHAQVSRTHIGD*VVHRVDFVNAHATFSFAFTLNGGDHVVINNA*PGADVPWTAVRHVTVDTTLQVYEPVKVSVKALVEFISFNIMNLSTVSEDH  8506

Range 4: 8085 to 8504 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 84/140(60%) 0/140(0%) Plus/Plus
Query       31  VDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNP  450
                VDRFI LKEM+  S FTE L GS TCNVV TVTC   V G SA G*ALF  T* P  + + KE+  CA  K TRWT *SP+  LL CACFS ++ K  +I   KG LNL  *PCTRLK +HTR *  * *NFRRT+L NP
Subject   8085  VDRFIILKEMNSTSAFTETLTGS*TCNVVSTVTCRTAVHGTSAPG*ALFMTT*SPPLRVKAKEKVACALTKSTRWTT*SPIWVLLTCACFSLRS*KSVSISSAKGSLNLMS*PCTRLKVRHTRA*IW*D*NFRRTSLLNP  8504

Range 5: 8085 to 8384 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 59/100(59%) 0/100(0%) Minus/Minus
Query       31  NVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESVN  330
                N  *F   +TEACT+K*  +RGL+RPPS*F *CA   FL    *+W+S   KQR T+RR P D+  TRYR+HDIAG RT Q LRK T + HFFQ NESV+
Subject   8085  NAY*FLTSQTEACTSK*NPYRGLSRPPS*FR*CACYFFLRFHP*RWRSCCHKQRLTRRRRPMDSGTTRYRRHDIAGLRTCQGLRKGTCRVHFFQYNESVD  8384

Range 6: 8430 to 8507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/26(69%) 0/26(0%) Minus/Minus
Query      376  *WI*KVRPPEISTLLGSHARMFRLEP  453
                *WI*K RPPEIS    S ARM  LEP
Subject   8430  *WI*KARPPEISISPDSRARMSHLEP  8507

Range 7: 8089 to 8205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 28/39(72%) 0/39(0%) Plus/Plus
Query       35  TDSLH*KK*A**VSLRRS**VRGPAMSCLR*RVLSLSVG  151
                TDSL+*KK*   V LRR * VR PAMSCLR*RV+ LS+G
Subject   8089  TDSLY*KK*TRQVPLRRP*QVRRPAMSCLR*RVVPLSMG  8205

Range 8: 8269 to 8373 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 20/35(57%) 0/35(0%) Plus/Plus
Query      215  RKEQYAHQ*N*LGGRFSPRCRVYLFVHASVRKTGN  319
                RK+ +AH  N LGGR SPR   YL VHASV +  N
Subject   8269  RKK*HAH*RNQLGGRLSPRYGFYLLVHASV*EVRN  8373

Range 9: 8431 to 8505 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 16/25(64%) 0/25(0%) Plus/Plus
Query      377  GSRRNIRACEPSKVEISGGRTFQIH  451
                GSR +IRA E  ++EISGGR F IH
Subject   8431  GSR*DIRARESGEIEISGGRAF*IH  8505

Strawberry chlorotic fleck associated virus, complete genome

Sequence ID: Length: 17039 Number of Matches: 3

Range 1: 7776 to 8198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 72/141(51%) 0/141(0%) Plus/Plus
Query       36  QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH  458
                QIHYI+RN+L   L  D++ F+  + RVYG+VS+RCPWDVC WLS+ Y   I +   +S GKSSMR+  INSV+++  D    YL   Q EK ++ KH ++       VLTVHEAQG TY  VNLVR+KFQE+ PF S  H
Subject   7776  QIHYIQRNDLGCSLLHDINDFLSDEVRVYGDVSFRCPWDVCEWLSLTYPVHIRSTNEDSVGKSSMRVVCINSVEEVPVDQDHVYLTYTQDEKRDVRKHLLKSVTDCPVVLTVHEAQGATYKYVNLVRVKFQENTPFSSYNH  8198

Range 2: 7856 to 8182 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 48/109(44%) 0/109(0%) Minus/Minus
Query      116  KGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*T  442
                KG  S*NF LT+FT   V+P ASCTVKT      L  +C L S FS     K*    S   SSTE +    IL  P+LS   + I   *  LN + TSHG   +T P T
Subject   7856  KGVFS*NFTLTKFTYL*VAPCASCTVKTTGQSVTLFKRCFLTSLFSSWVYVK*T*SWSTGTSSTEFMQTTLILDLPTLSSFVLLI*TG*VRLNHSHTSHGHLNETSPYT  8182

Range 3: 7764 to 8174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 37/137(27%) 0/137(0%) Minus/Minus
Query       24  VLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHP  434
                + LKF  +*++  V   L  VH *N +       K+F +  FF L   Q++   +   +++R+    +HT L+ T+   + +   +  AQP   IP     ++ V++     E I I      ++I+  V+NLST P
Subject   7764  IFLKFHSH*IYIFVSGTLRFVHC*NNRAICNTLQKVFPHIPFFILGVCQVNMILVYRYLLNRIYADHSHT*LTHTVFIRTSDMNWIG*AQPLTYIPWAPK*NIAVHSDFVRKEVINIMQ*RTAQVIALYVVNLSTVP  8174

Tobacco virus 1 isolate AnHui, complete genome

Sequence ID: Length: 15395 Number of Matches: 4

Range 1: 6779 to 7105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 50/109(46%) 0/109(0%) Plus/Plus
Query       15  VCLGMG*QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRK  341
                +  G   QIHYIER+EL K  Y D+D F++  CRVYG VSYRCPWDVC WLS +Y+  I +   ES G++++++  + SVDD+       YL   QSEK ++ + F R+
Subject   6779  ILFGDSKQIHYIERDELVKTTYHDIDSFIEPFCRVYGEVSYRCPWDVCEWLSRLYNRKIKSHNQESVGRTTVKVETVESVDDIPHFEDVKYLTYTQSEKSDVHRKFSRE  7105

Range 2: 7115 to 7219 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 25/35(71%) 0/35(0%) Plus/Plus
Query      354  LNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH  458
                +NV TVHEAQGET+ RV LVR KFQED PF S+ H
Subject   7115  VNVNTVHEAQGETFRRVALVRTKFQEDAPFVSVNH  7219

Range 3: 7114 to 7203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 22/30(73%) 0/30(0%) Minus/Minus
Query      353  KGSSS*NFNLTRFTRAYVSP*ASCTVKTLS  442
                KG+SS*N  LTR TR  VSP*ASCTV TL+
Subject   7114  KGASS*NLVLTRATRRNVSP*ASCTVLTLT  7203

Range 4: 6800 to 6955 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 16/52(31%) 0/52(0%) Minus/Minus
Query       36  NHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNL  191
                N  ++   QP   +PRT +   T+N+  +  E I I + +    I  NVM+L
Subject   6800  NFSVIQPRQPLTYVPRTPVRDFTINSAERFDE*INIMIGSFH*FIPLNVMDL  6955

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 4

Range 1: 7273 to 7587 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 61/105(58%) 0/105(0%) Plus/Plus
Query       15  VCLGMG*QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKH  329
                V  G   QIHYI+RNE D  +  DL+RFVD   RVYG VSYRCPWDVCAWLS  Y   IAT    S G SSMRI EI SV+D+       YL MLQSEK E+ K+
Subject   7273  VLFGDSKQIHYIDRNEYDVAVLSDLNRFVDDSHRVYGEVSYRCPWDVCAWLSTFYPKTIATTNLTSVGSSSMRIREIESVEDVECSADYVYLTMLQSEKKELKKY  7587

Range 2: 7579 to 7713 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 30/45(67%) 0/45(0%) Plus/Plus
Query      324  KHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH  458
                K ++RK  +   VLTVHEAQGETYARVNLVR KFQ+D+PF+S  H
Subject   7579  KKYLRKNNSGNTVLTVHEAQGETYARVNLVRTKFQDDDPFRSENH  7713

Range 3: 7272 to 7574 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 43/101(43%) 0/101(0%) Minus/Minus
Query       14  SSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTNXXXXXXXXXXXXXXSM**ICQPIPKHT  316
                S FSD SM +       + SST  IS MR+   P+   L VA+ L *   N A TS G   DT P TR   ST   RS     S S  SM**IC   P  T
Subject   7272  SFFSDCSMVRYT*SAEHSTSSTLSISRMRMDDEPTEVRLVVAMVLG*KVDNHAHTSQGHLYDTSPYTRWLSSTKRFRSESTATSYSLRSM**ICLLSPNST  7574

Range 4: 7611 to 7697 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 20/29(69%) 0/29(0%) Minus/Minus
Query      356  KGSSS*NFNLTRFTRAYVSP*ASCTVKTL  442
                KGSSS N  LTR T A VSP ASCTV+T+
Subject   7611  KGSSSWNLVLTRLTLA*VSPCASCTVRTV  7697

Nucleotide Sequence (353 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
353

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
250.0 924.3 54% 6.748e-66 52% NC_004724
232.2 636.2 26% 1.494e-60 36% NC_007448
110.0 166.5 18% 8.889e-24 40% NC_001598
108.7 155.1 17% 2.294e-23 51% NC_022978
72.6 72.6 13% 1.588e-12 55% NC_006944

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 6

Range 1: 7157 to 7507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.0 bits(542) 0.0 105/117(90%) 0/117(0%) Plus/Plus
Query        2  LVWGGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV  352
                LV  GTVSDE  T+ LSDDEA+EE+ ++EERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNF+RSMAPCNEDAQLYV
Subject   7157  LVRKGTVSDEEITNTLSDDEAIEEVPVSEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFERSMAPCNEDAQLYV  7507

Range 2: 7255 to 7506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 76/84(90%) 0/84(0%) Minus/Minus
Query      100  TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE  351
                TYN*ASSL GAIERSKFTIRN*S**A SLLWIS RA+SC+**NSRTALV PPVSLLSSTTIG GNSKLEF+LFKYSLTLTVLGE
Subject   7255  TYN*ASSLHGAIERSKFTIRN*S**AHSLLWISNRASSCI**NSRTALVNPPVSLLSSTTIGFGNSKLEFNLFKYSLTLTVLGE  7506

Range 3: 7157 to 7507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 67/117(57%) 0/117(0%) Minus/Minus
Query        2  DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPNQ  352
                +VQLS+LIT GHR  +IH+PQLI+VSA+FA+D + S+ LH+++F +RVG  SSLLIV+HH+R R+FE  V SIQ+  HP+R  *+++LFGD   F+RFI+R*SVG   I +SP  NQ
Subject   7157  NVQLSILITWGHRTFEIHDPQLIVVSAQFAVDFK*SELLHIVEFAYRVG*PSSLLIVVHHDRLREFEA*VQSIQIFTHPYRFG*VVALFGDWNFFNRFIIR*SVGDFLIGNSPLTNQ  7507

Range 4: 7158 to 7505 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 67/116(58%) 0/116(0%) Plus/Plus
Query        3  WFGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCT  350
                WF  GL  M+ +PTLYL MKR K F+SPKS   H +R*G* + *ID*T+ SN  +R WW TIRRLE *PTR  N   C++ L  +S AN ALT ISCG *I    WP VMR L+CT
Subject   7158  WFVRGLFPMRKSPTLYLMMKRLKKFQSPKSATTHPKR*G*VNI*ID*TQASNSRSRSWWTTIRRLEG*PTRYANSTICRSSLYLKSTANCALTTISCGS*ISNVLWPHVMRMLSCT  7505

Range 5: 7200 to 7505 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 53/102(52%) 0/102(0%) Minus/Minus
Query       45  RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIK  350
                RT E PHY GP + +NS+SATD SKR VC G + E   A ++I  PRW  LQSPYC PP+S   IR+ S +YS+  SP P  V+  ALR  + L+ LH QIK
Subject   7200  RTTEHPHYMGP*NVRNSRSATDRSKRTVCCGFQIERAPAYSRIRVPRWLTLQSPYCRPPRSASGIRSLSSIYSNIHSPLPFWVSRRALRRLELLQSLHHQIK  7505

Range 6: 7267 to 7506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 45/80(56%) 0/80(0%) Plus/Plus
Query      112  GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*SVADCEF*SLDGPL**GRSIVR  351
                G+GE + E* +L+ RI   D GG Q*GDWR +QRG  ILL+A   S+ +P QT+RLL SVAD EF +  GP+**G S+VR
Subject   7267  GKGE*IFE*IELKLRIPEADRGGRQ*GDWRVNQRGTRILLYAGARSI*NPQQTVRLLRSVADREFRTFYGPM**GCSVVR  7506

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 6

Range 1: 7213 to 7521 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.2 bits(503) 0.0 94/103(91%) 0/103(0%) Plus/Plus
Query       44  ALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV  352
                ALSDDEAVEE+S+ EERDDSPKTVR+SEYLNRLNSSFEFPKPI+VDDNK+TGGLTNAVREFYYMQELALFEIHSKLC YYDQLRIVNFDRS+APC+EDAQLYV
Subject   7213  ALSDDEAVEEISVAEERDDSPKTVRMSEYLNRLNSSFEFPKPIIVDDNKDTGGLTNAVREFYYMQELALFEIHSKLCTYYDQLRIVNFDRSVAPCSEDAQLYV  7521

Range 2: 7269 to 7520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 64/84(76%) 0/84(0%) Minus/Minus
Query      100  TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE  351
                TY+*ASSL GA +RSKFT+R+ S**  SLL ISKRA+SC+**NS TA V+PPVSLLSST IG GNSKLEF+LF+YSL LTVLGE
Subject   7269  TYS*ASSLHGATDRSKFTMRSWS**VHSLL*ISKRASSCI**NSLTAFVRPPVSLLSSTIIGFGNSKLEFNLFRYSLILTVLGE  7520

Range 3: 7213 to 7518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.2 bits(245) 0.0 51/102(50%) 0/102(0%) Minus/Minus
Query       44  VQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*S  349
                VQLS+L    H +I++H  QL+IV  + A++ E+S+FLH+IK  H V  T  +LIV+++NR RK E  +* +QV AHP RLR I+SLF +   F  FIVR*S
Subject   7213  VQLSILAARCHGSIEVHYAQLVIVGTQLAVNFEKSKFLHIIKLPHSVR*TPGILIVVYNNRLRKLEA*I*PVQVFAHPDRLRRIVSLFSNGDFFHGFIVR*S  7518

Range 4: 7172 to 7519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 49/116(42%) 0/116(0%) Plus/Plus
Query        3  WFGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCT  350
                W  +G  L+     LYLTMK  K     KSE I LRR G*A+T*  * + S+F + L   TIR   V* T   +FI C+N L S+  A+   TM +C  *  I  W    R L+CT
Subject   7172  WREKGRLLVTK*QLLYLTMKPWKKSPLLKSETIRLRRSG*ANT*TG*IQASSFRSLLL*TTIRIPGV*RTL*GSFIICRNLLFSKFTASCVPTMTNCA**TSIDPWHRAARMLSCT  7519

Range 5: 7352 to 7519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 20/56(36%) 0/56(0%) Minus/Minus
Query      183  RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYC  350
                RT E P    P  D++S  A  HS+   C   R+E + A NK  + R  + + PYC
Subject   7352  RTAEHPRCTVPRIDRSSLCAVGHSRYTACCEFRKEQVPAYNKTPSQRSLDPRYPYC  7519

Range 6: 7211 to 7330 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 20/40(50%) 0/40(0%) Minus/Minus
Query       42  EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIKR  161
                E R+ +L  S  RS  PS* N LAL+  + L  LHRQIK+
Subject   7211  ETRSLNLTCSGIRSS*PS*ANRLALQQRRFLPRLHRQIKQ  7330

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 2

Range 1: 6378 to 6611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.0 bits(235) 0.0 43/78(55%) 0/78(0%) Plus/Plus
Query      119  VSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV  352
                VSE+LN +N+S E P+PI+VD + E+  LTN+VREFYY+QELALFE+  KL  YYDQL++ NF+R    C++D  ++V
Subject   6378  VSEFLNAINTSNEQPRPIIVDHSPESRALTNSVREFYYLQELALFELSCKLREYYDQLKVANFNRQECLCDKDEDMFV  6611

Range 2: 6378 to 6572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 26/65(40%) 0/65(0%) Minus/Minus
Query      119  AIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAH  313
                ++KI N QLI++  KFA  L++S+FL VI+F H VGQ +    V++  R R     + S++ LA+
Subject   6378  SVKIRNLQLIVILTKFATQLKKSEFLEVIEFPHGVGQRARFGRVVNDYRPRLLIASINSVEKLAY  6572

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 2

Range 1: 6493 to 6726 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(232) 0.0 44/78(56%) 0/78(0%) Plus/Plus
Query      119  VSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV  352
                VSE+LN +N+S E PKP++VD   +TGGLTN+VREFYY+ ELAL E+ +KL  YYDQL +V F R  + C++D  L+V
Subject   6493  VSEFLNAINTSNEQPKPVIVDYCPDTGGLTNSVREFYYLNELALSELSNKLREYYDQLNVVGFKRKESLCDKDEDLFV  6726

Range 2: 6492 to 6674 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 31/61(51%) 0/61(0%) Minus/Minus
Query      118  TIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLT  300
                T  N S* ++SLL  S +A+S  **NS T LVKPPVS   ST  G G S L     + SLT
Subject   6492  TTFNWS*YSRSLLLNSDKASSLR**NSLTELVKPPVSGQ*STMTGFGCSLLVLMALRNSLT  6674

Mint virus 1, complete genome

Sequence ID: Length: 15450 Number of Matches: 1

Range 1: 6185 to 6325 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.6 bits(153) 0.0 26/47(55%) 0/47(0%) Plus/Plus
Query      206  TNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQL  346
                +NA+REFYY QE+ +F IHSKL  YY++LR V+F+R  A C++D  L
Subject   6185  SNAIREFYYAQEMKIFSIHSKLLGYYEELRAVDFNRKAATCSQDVDL  6325

Nucleotide Sequence (381 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
381

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
272.8 951.7 33% 1.026e-72 51% NC_004724
267.7 783.7 43% 3.334e-71 39% NC_007448
162.8 276.3 33% 1.288e-39 33% NC_022978
160.1 223.0 51% 8.66e-39 46% NC_001598
112.4 112.4 33% 1.917e-24 39% NC_027712

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 6

Range 1: 13226 to 13603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
272.8 bits(589) 0.0 112/126(89%) 0/126(0%) Plus/Plus
Query        2  ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP  379
                +LRFVESYTADPAIDALEE+LDAIMK  NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP SVGGFEINMKNVE FFDK+QRE+P+VSLRRQFNGARA+EAFKVFK GNISFKPISRLNIP
Subject  13226  VLRFVESYTADPAIDALEEKLDAIMKKSNPHLSTAQLWVGFFCYYGEFRTAQRRVVQRPGVYKTPNSVGGFEINMKNVEEFFDKIQREVPNVSLRRQFNGARAHEAFKVFKKGNISFKPISRLNIP  13603

Range 2: 13309 to 13605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 77/99(78%) 0/99(0%) Minus/Minus
Query       85  LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL  381
                LGMFNR+MGLKL+FP LNTL AS ALAPLNCRR++T G SR  LSKN STFF+ ISKPPT+ GVLYT GL TTR CAVRNSP**QK PTH+CAV+R*GL
Subject  13309  LGMFNRDMGLKLMFPFLNTLNASCALAPLNCRRRDTFGTSRWILSKNSSTFFILISKPPTELGVLYTPGLCTTRRCAVRNSP**QKNPTHSCAVDR*GL  13605

Range 3: 13226 to 13600 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 70/125(56%) 0/125(0%) Minus/Minus
Query        2  YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD  376
                YV* R GF+AD+  FKYFE L+ S +VEL P*R+   LSL LIKK F++ H+  +T++R+G  I+ RP +H  LC AKF V+ E++YPQLRRR MRI  LHYS+QF F R+NS +S V F +SQD
Subject  13226  YV*PRYGFEADVSLFKYFERLVRSGSVELSP*RHVWHLSLDLIKKLFDVFHINLETSDRIGRLIHTRPLHHPTLCGAKFAVIAEESYPQLRRR*MRITLLHYSVQFLFQRVNSRISSV*FDKSQD  13600

Range 4: 13228 to 13605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 65/126(52%) 0/126(0%) Plus/Plus
Query        4  PEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK  381
                PEI  I+H *  Y* V R IG YNE   SSS+ GA VGR  LLLR ISH TTS G++AG +*+ + G  F + +E+  ++F**  TR  +R  TA IQR  S  G QSI*+ ++QL TH+S+KHT+
Subject  13228  PEICRIIHC*SGY*RVGREIGRYNEEE*SSSIYGATVGRILLLLRRISHRTTSGGAKAGCV*DAQFGRRFRD*YEKRRRVF**DPTRGAKRVSTATIQRSQSARGVQSI*KGKHQLQTHISVKHTE  13605

Range 5: 13227 to 13601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 64/125(51%) 0/125(0%) Minus/Minus
Query        3  VCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRISG  377
                VCL E WV*S*    *IL* P  L  R*I AV+ R   LV +YQK  +  S   +N +P    Y  PA  P DVV+CEI R++R+ LPT AP  DED  +SL* PI L T Q*  Q C I +ISG
Subject  13227  VCLTEIWV*S*CFPF*IL*TPRALWLR*IVAVETRLAPLVGSYQKTLRRFSY*SRNLRPNWASYTHPAFAPPDVVRCEIRRNSRRILPTVAP*IDEDYSSSL*RPISLPTRQ*PDQQCMIRQISG  13601

Range 6: 13227 to 13604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 65/126(52%) 0/126(0%) Plus/Plus
Query        3  S*DSWNRTRLTQLLMR*KKNWML*XXXXXXXXXXXXCG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ  380
                S*D  N T L +LL R K+NW L**   ILI  RR+CG*  S  T NFA HN+ W +GR  I+ P R  V +  *+  K FLI  NE  +  LYG NST  E  R SKYLK   SA NP L *TY+
Subject  13227  S*DLSNHTLLIRLLTRWKRNWTL**RRVILIYLRRNCG*DSSAITANFAPHNVGWCKGRVCIRRPIRSEVSRLI*KTSKSFLIRSNERCQTCLYGDNSTEPERTRRSKYLKRETSASNPYLG*TYR  13604

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 7

Range 1: 13218 to 13595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
267.7 bits(578) 0.0 107/126(85%) 0/126(0%) Plus/Plus
Query        2  ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP  379
                ILR+VESYT+DPAIDALE++L+AI+K  NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP+SVGGFEINMK+VE+FFDKLQRELP+VSLRRQFNGARA+EAFK+FK GNISFKPISRLN+P
Subject  13218  ILRYVESYTSDPAIDALEDKLEAILKTSNPHLSTAQLWVGFFCYYGEFRTAQSRVVQRPGVYKTPDSVGGFEINMKDVEKFFDKLQRELPNVSLRRQFNGARAHEAFKIFKNGNISFKPISRLNVP  13595

Range 2: 13301 to 13597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 77/99(78%) 0/99(0%) Minus/Minus
Query       85  LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL  381
                LG F R+MGLKL+FP LN LKAS ALAPLN RRK+TLGNS *SLSKN ST FMFIS PPT+SGVLYT GL TT   AVRNSP**QK PTH+CAV+R*GL
Subject  13301  LGTFKRDMGLKLMFPFLNILKASCALAPLN*RRKDTLGNSL*SLSKNFSTSFMFISNPPTESGVLYTPGLCTTLL*AVRNSP**QKNPTHSCAVDR*GL  13597

Range 3: 13224 to 13592 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 52/123(42%) 0/123(0%) Minus/Minus
Query        8  YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHES  376
                ++ +R GF+  +   KYFESL+ S +V+L   R     SLK I++  +I HVYF++T+ + CFI+  P +++ L  AKF +VT+++ P LR R MRI    Y  QF F R++SW+ RVRF+ S
Subject  13224  HIQTRYGFETYVSVLKYFESLMRSGSVKLTSQRYIGQFSLKFIEELLDIFHVYFESTH*VWCFIHTWPLHYSTLSRAKFAIVTKESNP*LRCR*MRIASFQYRFQFVFQRVDSWI*RVRFYVS  13592

Range 4: 13217 to 13588 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 50/124(40%) 0/124(0%) Plus/Plus
Query        1  HPEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIK  372
                H +IR I+H   SY  V R+ G   E  QSSS+D A +G   LLL  ISH +    ++A  +*NTR+  W  NKHE C ++  * S R+ +  F  ++ R  S *GFQ+I* R+++  TH++ +
Subject  13217  HFKIRRILHVRSSYRRVGRQTGSDTEN*QSSSIDSATMGWILLLLWRISHGSK*SSAKARCV*NTRLSGWIRNKHERCREVLR*TSERIAQCIFATSV*RSQSA*GFQNI*ERKHKFQTHIAFE  13588

Range 5: 13402 to 13575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 26/58(45%) 0/58(0%) Minus/Minus
Query      186  WV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFY  359
                WV*+   R *I *KPH L  R*    K     L E Y++  +H SCLF+ H  + VFY
Subject  13402  WV*NLCFRS*IF*KPHALWLR*TDVAKIHWAILSEVYRRTSRHLSCLFRIHPLSLVFY  13575

Range 6: 13225 to 13365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 22/47(47%) 0/47(0%) Minus/Minus
Query        9  CEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRI  149
                CEI  SN++  P  A S DEDC  S+  P+ L T +*L   C I RI
Subject  13225  CEIRHSNKRIQPIVALSIDEDC*FSVSLPVCLPTRR*LDLTCKILRI  13365

Range 7: 13345 to 13575 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 30/77(39%) 0/77(0%) Plus/Plus
Query      129  VTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNP  359
                VT  NFA   +   +G+  IKH ++ V  K*T*+M +   I+F E+   +L   + T  E MRLSKYL+      NP
Subject  13345  VTMANFARLKVE*CKGQVCIKHQTQWVDSK*T*KMSRSSSINFRENCPMYLCDVSLTEPERMRLSKYLRTET*VSNP  13575

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 3

Range 1: 12378 to 12752 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 64/125(51%) 0/125(0%) Plus/Plus
Query        5  LRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP  379
                L  +ESY  D + ++L  ++D++++ DNP L  AQ W+GF CYYGE+RTA+ R   R DVYK P+ VG + INM NVE FF +LQ+ +PS+S+RR+F G+ A EAF +FK   I F PI+RLN+P
Subject  12378  LGLLESYFEDDSNESLRAKIDSLLQQDNPELGLAQRWIGFHCYYGEYRTAKTRKEKRADVYKLPKIVGDYTINMTNVEEFFSELQKNMPSISVRRRFCGSLATEAFSIFKKFGIGFPPITRLNVP  12752

Range 2: 12458 to 12751 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 45/98(46%) 0/98(0%) Minus/Minus
Query       85  GMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL  378
                G FN  +G K I   L  LKAS A  P N RR E  G    +  KN ST  MFI   PT  G LYTS L +    AV  SP**Q  P H  A    GL
Subject  12458  GTFNLVIGGKPIPNFLKMLKASVAKEPQNLRRTEMEGMFFCNSEKNSSTLVMFIV*SPTIFGSLYTSALFSFLVFAVLYSP**Q*NPIHRWAKPSSGL  12751

Range 3: 12381 to 12749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 41/123(33%) 0/123(0%) Minus/Minus
Query        8  YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHES  376
                +V* R+  K D    K  ESL S    +    R+ R + L+  +K F++ HVY   +N L  F+++ P     L  +  +VVT K YP L   E  +V L   I F  *     V  VRF +S
Subject  12381  HV*PRNWRKTDSKLLKNAESLGSQRTAKPTTHRDGRHVFLQF*EKLFHVGHVYRIISNDLRKFVHICPFFFPSLRGSVLSVVTVKPYPPLG*TEFWVVLLQE*INFRS*GFVRVVFEVRF*KS  12749

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 2

Range 1: 12273 to 12647 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 63/125(50%) 0/125(0%) Plus/Plus
Query        5  LRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP  379
                LR++ESY  D + + ++ ++D+++  DNP L  AQ WVGF CYYG FRTAQ R V R   YK P ++G F INM  VE FF++LQ+++PS+S+RR+F G+ ++EAF VFK   + F PI+RLN+P
Subject  12273  LRYLESYFEDDSNELIKVKVDSLLTRDNPELKLAQRWVGFHCYYGVFRTAQTRKVKRDAEYKLPPALGEFVINMSGVEEFFEELQKKMPSISVRRRFCGSLSHEAFSVFKRFGVGFPPITRLNVP  12647

Range 2: 12380 to 12646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 41/89(46%) 0/89(0%) Minus/Minus
Query      112  GMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTH  378
                G FN  +G K     L T KAS*   P N RR E  G    S SKN ST  +FI+  P   G LY++ L T    AV  +P**Q KPTH
Subject  12380  GTFNLVIGGKPTPNLLKTEKAS*DKLPQNLRRTEMEGIFFCSSSKNSSTPLIFITNSPRAGGSLYSASLFTFLVWAVLKTP**QWKPTH  12646

Tobacco virus 1 isolate AnHui, complete genome

Sequence ID: Length: 15395 Number of Matches: 1

Range 1: 12034 to 12405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 48/124(39%) 0/124(0%) Plus/Plus
Query        8  RFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP  379
                +++E+   D  + A+ E + +++   NP      LW+   CYYG +RTA  R VPRP +YK P  +    +N   VE FFDKLQ+  P  ++RRQF G    EA  VFK   + F  IS +N+P
Subject  12034  KYLENVLMDSDVVAMREYISSLLVKANPSSDLGMLWMALHCYYGTYRTAVTRKVPRPLLYKPPYQLTTETVNFTLVESFFDKLQKGRPGTNVRRQFFGKLGTEAIAVFKKLRVGFPKISAMNVP  12405

Nucleotide Sequence (540 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
54
108
162
216
270
324
378
432
486
540

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
159.1 303.8 26% 2.745e-38 27% NC_013007
228.3 1459.8 33% 3.13e-91 51% NC_004724
206.8 878.1 51% 1.736e-79 35% NC_007448
150.4 220.7 17% 1.146e-35 46% NC_022978
149.5 264.4 16% 2.163e-35 33% NC_001598

Alignments

Carrot yellow leaf virus, complete genome

Sequence ID: Length: 16354 Number of Matches: 3

Range 1: 10064 to 10351 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.1 bits(341) 0.0 61/96(64%) 0/96(0%) Plus/Plus
Query      253  MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL  540
                MVVFGLDFGTTFST+ V K+G++Y  KQ NS YIPTY++L  ET  + +GY+AESLM++ K+KGSFFRDLKRWVGC+  NF +Y   LKP Y V L
Subject  10064  MVVFGLDFGTTFSTISVLKEGEIYLRKQQNSPYIPTYIFLSEETAEVAYGYDAESLMYSRKIKGSFFRDLKRWVGCNEKNFEKYMSLLKPSYKVEL  10351

Range 2: 10015 to 10344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 51/110(46%) 0/110(0%) Minus/Minus
Query      204  TE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGR  533
                T * GFK   Y  K     PT  F+S K  PF F L I DSAS P     VS  R   VG+Y E  C  +*  PS  T+ VEKVVPKS PKTTI+     G*++ + D R
Subject  10015  TL*LGFKSDIYFSKFFSLHPTHLFRSRKKLPFIFLLYIKDSASYP*ATSAVSSERKI*VGMYGEFCCFRK*ISPSFKTEMVEKVVPKSNPKTTIAK*IFGG*QSDSHDFR  10344

Range 3: 10064 to 10339 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 25/92(27%) 0/92(0%) Minus/Minus
Query      253  VARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNH  528
                +   Q   +  K+  +  +P F + ++  FYF  VHQ F  I  +H  GL  +  +   +  ++L   +NF+   + +  KSR EV* +++H
Subject  10064  ITGLQE*HILLKILLVAPYPPFQITEKTTFYFSAVHQGFSVIPVSHFSGLFREKNIGGYVW*ILLFSQINFSFFQNRNGRKSRTEV*PKDHH  10339

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 15

Range 1: 10537 to 10836 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.3 bits(492) 0.0 89/100(89%) 0/100(0%) Plus/Plus
Query      238  CDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVR  537
                C + EMVVFGLDFGTTFSTVCVYKDGKVYS+KQNNSAYIPTYLYLFSETN+MVFGYEAESLMHN+KV+GSFFRDLKRWVGCDSSNF +YFDRLKP Y+VR
Subject  10537  CVICEMVVFGLDFGTTFSTVCVYKDGKVYSFKQNNSAYIPTYLYLFSETNHMVFGYEAESLMHNAKVRGSFFRDLKRWVGCDSSNFSDYFDRLKPHYAVR  10836

Range 2: 10346 to 10543 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 52/66(79%) 0/66(0%) Plus/Plus
Query       45  HCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV*  242
                H V  C  +MDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRR+ HE   + VRG GFSTVV*
Subject  10346  HDVCHCIDIMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRNVHETPISAVRGQGFSTVV*  10543

Range 3: 10314 to 10370 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 11/19(58%) 0/19(0%) Plus/Plus
Query       11  YPQLWCNCMTYTLCVIV*I  67
                +P+LW + +TYT+CV V*I
Subject  10314  FPRLWDDHVTYTMCVTV*I  10370

Range 4: 10548 to 10835 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.0 bits(393) 0.0 84/96(88%) 0/96(0%) Minus/Minus
Query      249  RTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS  536
                RT * GF+RSK S KLLESQPTQRFKSLK EP TF LCISDSAS*PKTM LVSE R*RYVG+YAELFCL E*TLPSLYTQTVEKVVPKSKPKTTIS
Subject  10548  RTA*CGFRRSK*SLKLLESQPTQRFKSLKKEPLTFALCISDSAS*PKTM*LVSEKR*RYVGMYAELFCLNE*TLPSLYTQTVEKVVPKSKPKTTIS  10835

Range 5: 10352 to 10546 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 40/65(62%) 0/65(0%) Minus/Minus
Query       51  RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*H  245
                +SHN  ET TTDGR  + V  SA+RF+HAND+Q++DE Y KN LVEQ+QTL+L NLVH I+T  H
Subject  10352  KSHNSRETLTTDGRYWSFVYVSAERFNHANDEQNEDECYCKNRLVEQIQTLELQNLVHNIYTVTH  10546

Range 6: 10316 to 10372 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/19(58%) 0/19(0%) Minus/Minus
Query       13  DIYTMTHNVYVMQLHHSCG  69
                +IYT+TH VYV    HS G
Subject  10316  NIYTVTHIVYVT*SSHSRG  10372

Range 7: 10537 to 10839 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 56/101(55%) 0/101(0%) Minus/Minus
Query      238  QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKIT  540
                + N +   QAI+V +KV  + THP F*VPKERA +  ++HQ*FGFIT+NHV+   E+VEV RN+R ++L  *VN TI +HAD  KSR E+*T+NNHF   T
Subject  10537  RANRIVWLQAIKVVTKVAGVATHPAF*VPKERASHLCIMHQ*FGFITKNHVISFGEKVEVCRNVRRIVLFE*VNLTIFIHADRRKSRTEI*TKNNHFANHT  10839

Range 8: 10344 to 10547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 41/68(60%) 0/68(0%) Minus/Minus
Query       43  KITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAR*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNV  246
                +ITQ+ RN  HGR   + RVRFC KI*SRE* A *RR L QK  G*A T+T+T +PGP* +Y+ TH V
Subject  10344  QITQQSRNPDHGRPILEFRVRFCGKI*SRE**AE*RRMLLQKPPG*ADTDTRTAEPGP*YLYSDTHRV  10547

Range 9: 10544 to 10834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 56/97(58%) 0/97(0%) Plus/Plus
Query      245  FTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPF  535
                F KWLF V* S RLF+ SAC +MV+FTH +K   R FR TST S +  TWF VMKPNH*C  ++*+A SLGT*N GWV    TL  T IA*+    F
Subject  10544  FAKWLFLV*ISVRLFRRSACIKMVRFTHSNKTILRTFRHTSTFSPKLITWFLVMKPNH*CIMQR*EALSLGT*NAGWVATPATLVTTLIA*SHTMRF  10834

Range 10: 10342 to 10569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 39/76(51%) 0/76(0%) Plus/Plus
Query       41  YTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYLADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV  268
                +T CV +   YGPG  V V V AQP  FC+N RL+ A HSRD IF QKRTR     RPW  FL+ CVI    +F +
Subject  10342  HTRCVSLYRYYGPGSAVRVSVSAQPGGFCNNIRLHSAHHSRD*IFPQKRTRNSNIGRPWSGFLDCCVICEMVVFGL  10569

Range 11: 10527 to 10724 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 40/66(61%) 0/66(0%) Plus/Plus
Query      228  STVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDA  425
                S ++  LRNGCF FR R+DFF+ LRV  W* LLI  K   V+SD+PLP L +  HGF L*SRITDA
Subject  10527  SRLLCDLRNGCFWFRFRYDFFDGLRV*RW*GLLIQTKQFCVHSDIPLPFLRN*SHGFWL*SRITDA  10724

Range 12: 10335 to 10418 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 16/28(57%) 0/28(0%) Plus/Plus
Query       34  HDVHIVCHRVNILWTRFYSLSVCTCSTK  117
                H  + +C  V ILWTRF S SVC CST+
Subject  10335  HVTYTMCVTV*ILWTRFCSSSVCICSTR  10418

Range 13: 10482 to 10547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 13/22(59%) 0/22(0%) Plus/Plus
Query      181  EAHTRFRTRPSVVEVSQPLCDL  246
                E +T+ + RPSVV VS+ LCDL
Subject  10482  ETYTKLQYRPSVVRVSRLLCDL  10547

Range 14: 10342 to 10590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 46/83(55%) 0/83(0%) Minus/Minus
Query       41  KKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCV  289
                +KS   +  K     +HTTVEKP PRT     SC  LRKDLITRM+S++KT V+AKTAWLS+Y+HSNC+TWSI  +   T C+
Subject  10342  RKSRTEI*TKNNHFANHTTVEKP*PRTADIGVSCTFLRKDLITRMMSRMKTNVIAKTAWLSRYRHSNCRTWSIISIQ*HTSCM  10590

Range 15: 10526 to 10723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 41/66(62%) 0/66(0%) Minus/Minus
Query      227  ASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVE  424
                ASVIRLHN+KPC   +R GRG SE T++ F  MSK YH  TRR  KKS R+LN+KQPFRK H + E
Subject  10526  ASVIRLHNQKPCD*FRRKGRGMSECTQNCFV*MSKPYHLYTRRPSKKSYRNLNQKQPFRKSHNSRE  10723

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 10

Range 1: 10544 to 10831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
206.8 bits(445) 0.0 81/96(84%) 0/96(0%) Plus/Plus
Query      253  MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL  540
                MVVFGLDFGTTFSTVCVYKDG+V+S+KQNNSAYIPTYLYLFS++N+M FGYEAESLM N KV+GSF+RDLKRWVGCDSSN  EY DRLKP YSVRL
Subject  10544  MVVFGLDFGTTFSTVCVYKDGRVFSFKQNNSAYIPTYLYLFSDSNHMTFGYEAESLMSNLKVRGSFYRDLKRWVGCDSSNLDEYLDRLKPHYSVRL  10831

Range 2: 10331 to 10531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 46/67(69%) 0/67(0%) Plus/Plus
Query       45  HCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV*S  245
                H V    ++M+QVLQFECL+LLN AVFA+TF+FILL+IRVIKSFR+ +HE  N  VR GGFSTVV*S
Subject  10331  HLVCHRAFIMNQVLQFECLFLLNLAVFAVTFIFILLVIRVIKSFRQKSHEAPNPVVRSGGFSTVV*S  10531

Range 3: 10543 to 10830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 74/96(77%) 0/96(0%) Minus/Minus
Query      252  RRTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTI  539
                +RTE* GFKRS+YS +LLESQPTQRFKSL NEP TF+L I+DSAS*P  M L SE R*R VG+YAELFCL E T PSLYT TVE VVPKSKPKTTI
Subject  10543  KRTE**GFKRSRYSSRLLESQPTQRFKSL*NEPLTFKLLINDSAS*PNVMWLESEKR*R*VGMYAELFCLNEKTRPSLYTHTVENVVPKSKPKTTI  10830

Range 4: 10327 to 10530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 38/68(56%) 0/68(0%) Minus/Minus
Query       41  DHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCV  244
                D+TTVEKPP RT  F  S    RKDLITRM  ++K KV AKTA  S+ KHSNCKT  I      T+C+
Subject  10327  DYTTVEKPPLRTTGFGAS*LFWRKDLITRMTRRMKMKVTAKTARFSRNKHSNCKT*FIINAR*HTRCM  10530

Range 5: 10544 to 10831 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 44/96(46%) 0/96(0%) Minus/Minus
Query      253  QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNH  540
                Q   V RF  IEVF +VT I THPTF +  +R   F+V HQ F  +T+ HVV + +++EV  ++R +ILL * N +IL+HA   +  AE+ TEN+H
Subject  10544  QAYRVVRF*TIEVFVEVTRIATHPTFQISIKRTPNFQVTHQRFSLVTKRHVVRIGKEIEVSWDVRRIILLE*KNPSILIHAHRRECGAEIQTENHH  10831

Range 6: 10358 to 10525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 24/56(43%) 0/56(0%) Minus/Minus
Query       72  HNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVH  239
                H+G*+T  TD  +R  V   AKR +H +D+++++ES+ KN  ++Q QT +L NL+H
Subject  10358  HHG*KTPATDNGIRRFVTLLAKRLNHPDDEKNENESHSKNREIQQKQTFELQNLIH  10525

Range 7: 10545 to 10826 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 41/94(44%) 0/94(0%) Plus/Plus
Query      254  WLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPF  535
                W FSV  SA      AC RM  F H S+I  R  + TS      TT   V + N *  T K   R +  *NVGWV I+VT  NTSI *N  T +
Subject  10545  WWFSVWISAPHSLRCACIRMDGFFHSSRIIRRTSQLTSISFPILTT*RLVTRLNR**VT*KLGVRFIEI*NVGWVAIRVTSTNTSIV*NLTTRY  10826

Range 8: 10319 to 10360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 7/14(50%) 0/14(0%) Plus/Plus
Query       31  LHDVHIVCHRVNIL  72
                + D+H+VCHR  I+
Subject  10319  VRDIHLVCHRAFIM  10360

Range 9: 10503 to 10715 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 25/71(35%) 0/71(0%) Minus/Minus
Query      212  ASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVEKPPPR  424
                +S I+  N+  C  +++  RG    T +Y A M K  HP TR   +  CR+ NRK P+ +  TT     PR
Subject  10503  SSTIQPRNQTSCG*NRKRDRGKLGCTPNYSA*MKKPVHPYTRTP*RMWCRNPNRKPPYARLLTTPRLKNPR  10715

Range 10: 10755 to 10820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 13/22(59%) 0/22(0%) Minus/Minus
Query      464  SSAVSSDRSILQSYLNHNPPNV  529
                SS V +DR I + Y N NPPNV
Subject  10755  SSEVLNDRGIRRGYSNRNPPNV  10820

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 2

Range 1: 9713 to 10000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 56/96(58%) 0/96(0%) Plus/Plus
Query      253  MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL  540
                MVVFGLDFGTTFS+VC Y   ++Y YKQ +SAYIPTYLYL +++  + FGY+AE L ++  V+G F+RDLKRWVGCD  N+ EY  +L P Y  +L
Subject   9713  MVVFGLDFGTTFSSVCAYVGNELYLYKQRDSAYIPTYLYLHADSQEVAFGYDAEVLSNDPSVRGGFYRDLKRWVGCDEENYEEYLTKLSPPYKTQL  10000

Range 2: 9697 to 9966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 41/90(46%) 0/90(0%) Minus/Minus
Query      237  KYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSH  506
                +YS     SQPTQRF+S    P T       SAS PK     S  R +YVG+ A   CLY+ +      QT+EKVVPKSKP TTI  R +
Subject   9697  RYSS*FSSSQPTQRFRSR*KPPRTEGSLDKTSASYPKATSCESACRYKYVGM*ALSLCLYKYSSFPT*AQTLEKVVPKSKPNTTIIQRQY  9966

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 3

Range 1: 9608 to 9895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.5 bits(320) 0.0 54/96(56%) 0/96(0%) Plus/Plus
Query      253  MVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL  540
                MVVFGLDFGTTFS+VC Y   ++Y +KQ +SAYIPTY++L S+T  + FGY+AE L ++  V+G F+RDLKRW+GCD  N+ +Y ++LKP Y   L
Subject   9608  MVVFGLDFGTTFSSVCAYVGEELYLFKQRDSAYIPTYVFLHSDTQEVAFGYDAEVLSNDLSVRGGFYRDLKRWIGCDEENYRDYLEKLKPHYKTEL  9895

Range 2: 9596 to 9883 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 32/96(33%) 0/96(0%) Minus/Minus
Query      241  VARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKI  528
                V R +  +V S V  + ++P F*V  E +   ++V +  G ++E+H + +R    V R +  + LL  + F   +   +*KS AEV*TENNH   +
Subject   9596  VVRLKFFQVVSIVFFVASYPAF*VAIETSTN*KIVRKNLGVVSESHFLSIRM*KYVSRYVSTISLLEQIQFFSNIGTHT*KSGAEV*TENNHHTTV  9883

Range 3: 9604 to 9837 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 36/78(46%) 0/78(0%) Minus/Minus
Query      249  SQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS  482
                S P QRFKS    P T       SAS PK    VSE +   VG+ A   CL   +       T+EKVVPKSKPKTTI+
Subject   9604  SHPIQRFKSR*KPPRTERSLERTSASYPKATS*VSECKNT*VGM*ALSLCLNRYSSSPT*AHTLEKVVPKSKPKTTIT  9837

Nucleotide Sequence (662 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
67
134
201
268
335
402
469
536
603
662

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
410.7 1411.6 29% 6.693e-114 40% NC_004724
363.1 1146.4 43% 1.482e-99 35% NC_007448
73.0 138.7 31% 3.043e-12 28% NC_001598
81.7 112.1 27% 2.867e-18 31% NC_013007
77.6 138.2 27% 5.225e-26 28% NC_022978

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 8

Range 1: 2264 to 2860 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
410.7 bits(890) 0.0 170/199(85%) 0/199(0%) Minus/Plus
Query       43  GKFLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR  639
                G+ LR D +PCSRDYAAMLSFAAGGRFPLV MTR+KYKNGYCYLAHCRYASAF+LKGFHPA FDIGANPTAA+LRSRMVS+LG R LSLNLYGS TSRG FHCDYDA Y KDLRF+SAI+AGKEE GEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVI+VP ++S+ TQ+ L R
Subject   2264  GRLLRRDVIPCSRDYAAMLSFAAGGRFPLVLMTRDKYKNGYCYLAHCRYASAFLLKGFHPAVFDIGANPTAAKLRSRMVSVLGDRSLSLNLYGSFTSRGIFHCDYDAAYVKDLRFMSAIVAGKEEMGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIRVPFYMSEVTQNSLTR  2860

Range 2: 2263 to 2820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
329.1 bits(712) 0.0 151/186(81%) 0/186(0%) Plus/Minus
Query       83  GTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RKNFP  640
                GTL+TGLSFF+L TSFLKSI+SFS+LNFN+ESLLPYNLS*TASIVFCFIAGV+SEATTSP+SSLPA IAD NLKSF+* AS*SQ K PR+V++PYKFKLR L+PR ETMRDLS AAVGLAP+SK AG KPF  KALAYLQ AK*Q*PFLYL LVIKT GKRPPAA DNIAA*SLEQG  S RK+ P
Subject   2263  GTLITGLSFFRL*TSFLKSIRSFSMLNFNNESLLPYNLS*TASIVFCFIAGVISEATTSPISSLPATIADMNLKSFT*AAS*SQ*KIPRDVKDPYKFKLRLLSPRTETMRDLSFAAVGLAPMSKTAG*KPFRRKALAYLQ*AK*Q*PFLYLSLVIKTNGKRPPAANDNIAA*SLEQGMTSRRKSLP  2820

Range 3: 2333 to 2854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 86/174(49%) 0/174(0%) Plus/Minus
Query       49  QNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETTA  570
                Q VL  F  V  + N+GS+ LQ L+VIL+IY +FL  QFQ  I+T++ P+VN F+S LFHRRS + SN+LS   LT  +R* +S*I  I+RVVI +++ A   R V I T T    +RNHAR + R R VS N++   ++T Q K  RVP +  +TVT+L+ IPRH NQRETT+
Subject   2333  QRVLSDFRHVERHPNNGSILLQALNVILEIY*IFLYAQFQQRIVTTIQPIVNSFDSLLFHRRSYIRSNHLSHFLLTSHDR*HES*IFHISRVVITVKNTAGRERPV*IQTQTSVP*DRNHARSKLRRRRVSANVKNRRMKTLQKKSARVPTVSQVTVTVLVFIPRH*NQRETTS  2854

Range 4: 2274 to 2813 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.2 bits(291) 0.0 91/180(51%) 0/180(0%) Minus/Plus
Query       90  CVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSL  629
                C  TS   QE T RC    + VVS WF *RGI+ R VTV     GTR    *+V       L LT R R   RAWFR     V*V*I T L   A     ITTR+M +I*D CQR   VR++ ER LL   LRR*NR+L K FT G   V I  *N*  RK **I RMT R *R+ DP L
Subject   2274  CAATSYPAQEITLRCCRLPQEVVSRWF**RGINTRTVTVTWLTVGTRALFF*RVFILRFLTLALTRRRRSLDRAWFRS*GTEV*V*IYTGLSRPAVFFTVITTRLM*KI*DSCQRSWLVRRKWERWLLLI*LRR*NRRLSKLFTIGCMVVTIRC*N*A*RKI**ISRMTFRA*RRIDPLL  2813

Range 5: 1481 to 1858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.4 bits(276) 0.0 51/126(40%) 0/126(0%) Minus/Plus
Query      238  LPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDI  615
                +PCS DY AML + +GG+FPLV M+R  Y +G CY+AH RY  AF  + F  + + +G+ P+ ARL++ ++   G   L++ + G   SR AFHCDYD+ Y + L  L+  + G E     +AS +
Subject   1481  IPCSVDYVAMLRYVSGGKFPLVLMSRECYPDGLCYMAHMRYLCAFFCQPFRESDYPLGSWPSVARLKALVLKRFGDEALNIGVRGYYVSRRAFHCDYDSKYARSLMRLAGYVGGDEVIHSTLASTV  1858

Range 6: 2406 to 2813 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 73/136(54%) 0/136(0%) Plus/Minus
Query       90  **RVCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQXXXXXXXXXXXXXTKILNPSHNPRRNRNGKPRER*KNRTNLNLDASRQESKPCAT*ASRPWG*HQYRRQRGGNLST*RHSRT  497
                **RV  SS S RHS*NL  LS  SIS  N Y+  T RK+L+* SVSSPE  +KQ PL   PY+  SLT ILN SH PRRN + K R  *K R N N D      KPCA *AS P G* Q ++ +  N S  + SRT
Subject   2406  **RVYPSSGSERHS*NLLDLSLCSISTTNRYYHTTYRKQLR*SSVSSPELYQKQPPLPFPPYQPRSLT*ILNLSHKPRRNHSEKYRGT*KTRINSNSDFCPLGPKPCAI*ASPPSG*RQCQKPQDENPSEEKRSRT  2813

Range 7: 2245 to 2550 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 45/102(44%) 0/102(0%) Minus/Plus
Query      353  GVFGRDRKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVRFFY  658
                G F   R   A     L KRLR DV+    RSFP GF DE *+ E LLL   L VRE    E F      +W *P G EA +AHGF    + S+F+F+R F+
Subject   2245  GTFDAGR*ALAPRRHTLLKRLRCDVVVCRRRSFPVGFNDEG*IQERLLLLGSL*VRERFSSEGFSSCGF*HWR*PDGGEA*IAHGFGPRGQKSEFEFIRVFH  2550

Range 8: 2599 to 2742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 27/48(56%) 0/48(0%) Minus/Plus
Query      161  FKIFVSDYXXXXXXXXGSCFRHHSGDETENY*SRLRQVIRK**FTIEI  304
                FKI VSD   *G + RG CF ++SGDETE+Y S LR V+  * F +EI
Subject   2599  FKIHVSDRGW*GGNGRGGCF*YNSGDETEDYRSCLR*VVW**RFVVEI  2742

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 9

Range 1: 2287 to 2877 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
363.1 bits(786) 0.0 153/197(78%) 0/197(0%) Minus/Plus
Query       43  FLRHDFLPCSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILAR  633
                FLR+DFLPCS DYAAM SFAAGGRFPLV MTR KY NG+CYLAHCRYA AF+LKGF P  FDIGA PTAA LR RMVS+LG R L LNLYG+ TSRG FHCDYDA Y KDLR +SA+IAGK+   EVV SDITPAMKQKTIEAVYDRLYG  DSLLKLSIEKDLIDFKNDVQSLKKDRP++KVP ++S+ TQ+ L R
Subject   2287  FLRYDFLPCSVDYAAMFSFAAGGRFPLVLMTRIKYLNGFCYLAHCRYACAFLLKGFDPKRFDIGAFPTAADLRRRMVSVLGDRSLGLNLYGAYTSRGVFHCDYDAKYIKDLRRMSAVIAGKDGVEEVVPSDITPAMKQKTIEAVYDRLYGGTDSLLKLSIEKDLIDFKNDVQSLKKDRPIVKVPFYMSEATQNSLTR  2877

Range 2: 2289 to 2858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.9 bits(574) 0.0 130/190(68%) 0/190(0%) Plus/Minus
Query       62  VCLDRWVGTLMTGLSFFKLCTSFLKSIKSFSILNFNSESLLPYNLS*TASIVFCFIAGVMSEATTSPVSSLPAIIADKNLKSFS*PAS*SQWKAPREVEEPYKFKLRRLAPRIETMRDLSLAAVGLAPISKAAGWKPFNIKALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS*RK  631
                V  D   GTL  G SFF+LCTSFLKSIKSFS+L+F++ES+ PYNLS TASIVFCFIAGVMSE TTS   S PAI AD   KSF   AS*SQ K PR+V  PYKFK + L+P  ET+R L  AAVG AP+SK  G KPFN  A AY Q AK*Q PF YL LVI+TKGKRPPAAK+NIAA*S EQG+KS*RK
Subject   2289  VASDM*KGTLTIGRSFFRLCTSFLKSIKSFSMLSFSNESVPPYNLSYTASIVFCFIAGVMSEGTTSSTPSFPAITADIRRKSFIYFAS*SQ*KTPRDVYAPYKFKPKLLSPSTETIRLLRSAAVGKAPMSKRFGSKPFNKNAHAYRQ*AK*QNPFRYLILVIRTKGKRPPAAKENIAA*STEQGKKS*RK  2858

Range 3: 2353 to 2877 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 75/175(43%) 0/175(0%) Plus/Minus
Query       43  SGQNVLGVFGQVGGNFNDGSVFLQTLHVILKIYQVFLDTQFQ**IITSV*PVVNGFNSFLFHRRSDVGSNYLSCLFLTGDNR*QKS*ILLITRVVIAMESPARGRRTVQI*T*TPRAKNRNHARPEPRGRGVSTNIEGSGVETFQHKGTRVPAMG*ITVTILILIPRHKNQRETT  567
                + Q +L  F  V G+F+D S+FLQTL+V+ ++  VFLD Q Q  +  ++  ++ GFN  L H RS V  NYL    L+  NR   +*I  I R+VI M++ A   R VQI  *T   K+RNH   + R  G ST+++   V+TF  K  R+PAM *IT  I IL   H+N RE T
Subject   2353  TSQRILSCFRHVKGDFDDWSIFLQTLYVVFEVD*VFLDAQLQQRVGAAIQSIIYGFNRLLLHSRSYVRRNYLFYPVLSSYNRRHTT*IFYILRIVITMKNAA*RVRAVQIQA*TSITKHRNHTSSKVRRGGKSTDVKTLRVKTF*QKRARIPAMS*ITEPI*ILDSSHQN*REAT  2877

Range 4: 1489 to 1863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 52/125(42%) 0/125(0%) Minus/Plus
Query      235  CSRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDIT  609
                CS DY AML +  GG+FPLV M+R  Y++G+CYLAH RY  AF  + F  + + +G+ PT ARL++ +    G     + L G  TSR  +HCDYD+ Y +  R LS  + G       + S IT
Subject   1489  CSVDYVAMLRYVCGGKFPLVLMSRINYQDGHCYLAHMRYLCAFYCRPFRESDYALGSWPTVARLKACVEKNFGVEACGIALRGYYTSRNVYHCDYDSSYMRGFRNLSGRVGGGSFDPSSLTSVIT  1863

Range 5: 2288 to 2833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 80/182(44%) 0/182(0%) Minus/Plus
Query       87  FCVMTSSLVQETTRRCYLSLRAVVSLWFL*RGISIRMVTVI*PIAGTRVPLC*KVSTPLPSILVLTPRPRGSGRAWFRFLARGV*V*ICTVLLPLAGLSIAITTRVMRRI*DFCQRLSPVRKRQER*LLPTSLRR*NRKLLKPFTTGYTEVMIHY*N*VSRKT**ILRMTCRV*RKTDPSLK  632
                FCV    LV  T  RC+L  R V SL F *   SI M +VI* IAG R   C*KV T      VL P  R     WFR L   V* *ICT     A   I IT R + +I   C+RL   R   +R* L T L  *+R+ LKP+           *+* SRKT*   + T RV*RK D S K
Subject   2288  FCVTIFCLVPWTMLRCFLLRRVVASL*F**LESSI*MGSVI*LIAGMRARFC*KVLTRSVLTSVLFPPRRTLEDVWFRCLVIEV*A*ICTARTRHAAFFIVITMRSI*KIYVVCRRL*LERTG*KR*FLLT*LLL*SRRRLKPYMIDCMAAPTRC*S*ASRKT*STSKTTYRV*RKIDQSSK  2833

Range 6: 2280 to 2558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 33/93(35%) 0/93(0%) Minus/Plus
Query      362  RKIFAS*LPPLFKRLRGDVIFRCGRSFPFGFYDEE*V*EWLLLFSPLQVRECLYVERFPPRCLRYWC*PHGREAQVAHGFDSWREASKFKFVR  640
                + +FA     LF+ L  DV F  G S PF   D   V +W+LLFS L V   ++V+RF P    + C  H       +GF +W    + +FVR
Subject   2280  KSLFALRFFALFRGLCCDVFFCGGWSLPFSSDD*NQVSKWVLLFSSLPVCVRVFVKRF*PEAF*HRCFSHRGGP*KTYGFGAW**KFRLEFVR  2558

Range 7: 1476 to 1616 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 21/47(45%) 0/47(0%) Plus/Minus
Query      482  KALAYLQWAK*Q*PFLYLFLVIKTKGKRPPAAKDNIAA*SLEQGRKS  622
                KA  Y  WA+*Q P   L L+++T+G  PP    +IA *S EQ   S
Subject   1476  KAHRYRIWAR*QCPSW*LILLMRTRGNFPPHTYRSIAT*STEQATAS  1616

Range 8: 2669 to 2821 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 21/51(41%) 0/51(0%) Plus/Minus
Query       99  VCLSSNSARHS*NLSSLSRYSISIVNHYFRITCRKRLQ*FSVSSPE*CRKQ  251
                V LSS+S R  *+  SLSR S S  +         RLQ  S S  E C+K+
Subject   2669  VDLSSDSVRRF*SRLSLSRCSASATSRCRHTIYHIRLQSSSAS*QELCQKE  2821

Range 9: 1724 to 1795 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/24(46%) 0/24(0%) Plus/Minus
Query      303  NPSHNPRRNRNGKPRER*KNRTNL  374
                NPS+   RNR+ K  ER  +R  L
Subject   1724  NPSYRKSRNRSDKHSERCNSREEL  1795

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 2

Range 1: 1878 to 2096 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 31/73(42%) 0/73(0%) Minus/Plus
Query       40  EVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILARS  258
                E  A +IT ++K K IE+VY+R+    D+LL  S+EKDLIDFK++++SL K++  + VP ++ +  Q  L R+
Subject   1878  EEEAPEITSSLKHKAIESVYERVSIHKDNLLARSVEKDLIDFKDEIKSLSKEKRSVTVPFYMGEAVQSGLTRA  2096

Range 2: 1551 to 1946 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 37/132(28%) 0/132(0%) Minus/Plus
Query      202  YAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAV  597
                Y A L+ A G R  +  + + +   G CYLAH     A   + F    F +G  PT      R+   LG   L   + G   SR  FHCD  + +      L   I G EE    + S +     +   E V
Subject   1551  YHAALTIARGDRPRVGELLQYRPGEGLCYLAHAALCCALQKRTFREEDFFVGMYPTKFVFAKRLTEKLGPSALKHPVRGRQVSRSLFHCDVASAFSSPFYSLPRFIGGVEEEAPEITSSLKHKAIESVYERV  1946

Carrot yellow leaf virus, complete genome

Sequence ID: Length: 16354 Number of Matches: 2

Range 1: 1540 to 1929 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 40/130(31%) 0/130(0%) Minus/Plus
Query       58  IGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKEETGEVVASDITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQ  447
                +G NP+A  L +R+ +  G    S ++ G  T    FHCD  +     L +L     G E   E V + +T   + K +  V+D L  + +SLL  S+E DL+DF N  ++L++ +  ++VP  L++  Q
Subject   1540  LGRNPSATDLSARISAYFGFAAASYHIAGRYTGYNRFHCDNSSRKLYTLEYLREAAVGAEGEDEEVNTSLTDVGRVKALTQVHDSLRANRESLLVKSMEMDLVDFLNTTKNLQRGKEKLRVPFMLTEVQQ  1929

Range 2: 1372 to 1521 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 16/50(32%) 0/50(0%) Minus/Plus
Query      457  SRDYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPA  606
                SRDY       + G      ++R     GYCYL H  + S      F PA
Subject   1372  SRDYLTTYRMRSRGYIHDSILSRYHAPRGYCYLNHIFFLSLRAGCAFRPA  1521

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 2

Range 1: 1987 to 2187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 28/67(42%) 0/67(0%) Minus/Plus
Query       40  ITPAMKQKTIEAVYDRLYGSNDSLLKLSIEKDLIDFKNDVQSLKKDRPVIKVPTHLSKHTQHILARS  240
                IT ++K K IE+ ++R+  + D+LL  S+EKDL+DFK DV+   +++P++KVP ++ +  Q  L RS
Subject   1987  ITSSLKHKAIESAFERIPNNKDNLLARSVEKDLVDFKEDVKKFTREKPIVKVPFYMGESVQSCLTRS  2187

Range 2: 1636 to 1968 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 31/111(28%) 0/111(0%) Minus/Plus
Query      268  DYAAMLSFAAGGRFPLVFMTRNKYKNGYCYLAHCRYASAFMLKGFHPAAFDIGANPTAARLRSRMVSILGARRLSLNLYGSSTSRGAFHCDYDAGYEKDLRFLSAIIAGKE  600
                +Y   LS A G R P   + R +   G CYL H  +  A   + F    F +G   T   +  +++  LG   L+ ++ G  T+R  FHCD  +        L   + GK+
Subject   1636  NYHIALSIARGERRPPTQLLRYQPGEGLCYLTHAAFCCAHFQRTFKEEDFYVGVYTTKHIVARKLIEKLGPESLNYHVRGRQTARDLFHCDLMSTTSYPFYSLPKFLGGKK  1968

Nucleotide Sequence (810 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
81
162
243
324
405
486
567
648
729
810

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
510.6 1580.7 24% 7.343e-144 30% NC_007448
549.1 2017.8 29% 1.903e-155 50% NC_004724
155.5 300.0 36% 1.991e-46 31% NC_022978
155.5 272.8 30% 2.79e-39 33% NC_001598
64.3 161.3 20% 8.436e-24 33% NC_013007

Alignments

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 8

Range 1: 12231 to 13031 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
510.6 bits(1108) 0.0 201/267(75%) 0/267(0%) Plus/Plus
Query        9  SEVTRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY  809
                ++VTR   Y   +MSNHSWESLFKKFYGEADWK+YLS+SIAAHS+++KNLP+ +LYGGR+V+KS+FESAAP SFEQELGLFILSER+VGW K+CG+TVEEAAY LTNP A+   AE C PDVK+EGQKY+MEDV NFMRLSNLD +D+ L EQCWSLSNSCG LINPDDK RFV+LTFK+ ++I+D+  AN++CRV DYLVYAMSLF QR QKSQ+GNISLYEKYC +IR YL STDLFFT+PDR PLLTGILYDFCKEY+VFYS+Y
Subject  12231  TKVTRPVPYHQTRMSNHSWESLFKKFYGEADWKRYLSRSIAAHSSEIKNLPEIRLYGGRVVKKSEFESAAPNSFEQELGLFILSEREVGWSKLCGITVEEAAYDLTNPKAYKFTAEICSPDVKSEGQKYTMEDVMNFMRLSNLDVNDKTLAEQCWSLSNSCGELINPDDKGRFVALTFKDRDIIDDAGAANVECRVGDYLVYAMSLFEQRTQKSQSGNISLYEKYCEYIRTYLGSTDLFFTAPDRNPLLTGILYDFCKEYNVFYSSY  13031

Range 2: 12236 to 13030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
391.9 bits(849) 0.0 183/265(69%) 0/265(0%) Minus/Minus
Query       14  YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRVT  808
                Y E*KTLYSLQKS R+PVS G LSG VKN+SVL K  L+  QYFS  E+LP CDF  L  NRD+A*TR*S TR S  A   S I SL L VR T R LSSGLI +PHELD DQHCS  +LSL SK ++RMKF TSSI YF PS+FTSG H SA    ALGFV  YAASSTV+PH L HPTSRSLSMNSPNSCS +LGAADS SDF T LPPY+ +SGRF  S ECAAILL+RY FQSASP*NFLNRLS EWFDI +  *   RVT
Subject  12236  YDE*KTLYSLQKSYRIPVSNGFLSGAVKNRSVLPK*VLMYSQYFSYKEMLPDCDFWVLCSNRDIA*TR*SPTRHSTLAAPASSIMSLSLKVRATNRPLSSGLINSPHELDNDQHCSASVLSLTSKFDKRMKFITSSIVYFCPSLFTSGLHISAVNL*ALGFVRSYAASSTVIPHNLLHPTSRSLSMNSPNSCSKELGAADSNSDFFTTLPPYSRISGRFLISLECAAILLERYLFQSASP*NFLNRLSQEWFDILVWW*GTGRVT  13030

Range 3: 12234 to 13022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.0 bits(489) 0.0 110/263(42%) 0/263(0%) Minus/Minus
Query       12  VEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES*PSNF  800
                VE+ + FTKVV +  K*  P+RRRE+ + T QV  D+  + L++ ++ RL  L  L+K GH VN*IIA+AT ++  TR+++ + + + + HE   IV I+Q   RI *RPTL  Q  +  I +  THE+ ++FH + L+F+ YIR  +   +  S G+ ++V C  H ++   AP H+  A*YE S FL +  RS R ++G  Y+ T++Q + W*I +   VC  T R V LP+C PV+ FEQTFP VVRH    V   P NF
Subject  12234  VENVIFFTKVV*DTRK*RIPIRRREKQVRTPQVSSDVFAVFLVQGDVARLRFLGPLLKQGHSVN*IIAHATFHVGGTRIINYVSVLKGESHEPPFIVWIDQFAARIG*RPTLFRQCLVVNIQI**THEVHHVFHSILLSFTFYIRAAYLGSEFVSFGICKIVCCFLHRYSA*FAPSHLPFA*YEQS*FLFKRVRSRRFELGFLYDPTTIQSNFW*ILNFT*VCCYTPREVSLPVCFPVELFEQTFPGVVRHPRLVVGHWPRNF  13022

Range 4: 12229 to 12978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.6 bits(331) 0.0 97/250(39%) 0/250(0%) Plus/Plus
Query        7  VQKLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYL  756
                +QKL G   T    CRTT GKVCSK+ TG+Q GR+T L V  HT    +IYQ  +C  V  * +P  + +L    +RN D SY*A+  W GA    * W++Q T  + P L  S  +   RM*++K ++  WK    SCV+   +     W ++VG Y IR   * I TI+  S L   +  +*   RV     VA AII*FT CP L++  R+         R+    S  TW V    SRR  G  YL
Subject  12229  IQKLRGQCPTTRRGCRTTPGKVCSKSSTGKQTGRDTSLGV*QHTQVKLRIYQKFDCMVVGS*RNPSSNRRLLTLLNRN*DCSY*ANGRWDGANYAE*RWRKQHTILQIPKLTNSLPRYAARM*KVKDRSILWKT**TSCVYQIWMLTTRHWRNSVGRYPIRAAN*SIQTIKGGSWLSPLRTET*LMMRVPPTWNVAWAII*FTLCPCLSRGPRNRSLATSPCTRNTANTSELTWGVRTCFSRRRIGIRYL  12978

Range 5: 12230 to 12646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 65/139(47%) 0/139(0%) Plus/Plus
Query        8  FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHA  424
                ++SY+AS+LP DEDVEPL+GKSVQK+LRG RLEEIP+*+Y  TL+   +STR S V  *  KE+R  +  S +   GI T+HTKR   G+ Q + ++ G  S+ +++ Q        M  GCK *R ++  GR  E HA
Subject  12230  YKSYAASALPPDEDVEPLLGKSVQKVLRGSRLEEIPL*EYSSTLK*N*ESTRNSTVWW*GRKEIRVRIGGS*LF*TGIRTVHTKRTGGGMEQIMRNNGGGSSIRSYKSQSLQIHCRDMQPGCKK*RTEVYYGRRDELHA  12646

Range 6: 12839 to 12979 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 14/47(30%) 0/47(0%) Plus/Plus
Query      617  HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTY  757
                +VP+* +  E+    +  + E+L  +Q +LG+Y  + H A  +++TY
Subject  12839  YVPV*AEDPEIAVWQHLLVREILRIHQNLLGEYGPVFHGAG*ESVTY  12979

Range 7: 12232 to 12648 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 65/139(47%) 0/139(0%) Minus/Minus
Query       10  DA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIEYLVDFSRPRSVRQYF*IGISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LL  426
                +A*+S  LP     L  LHP  I +    K W  *   L  P      C  P   RLV* V IP +   E   + R SL+ Y  T+E+LVD     SV  Y * GISS+L PR+ F*TDFP SGSTSSS GR LA *LL
Subject  12232  NA*SSSRLP*YTSVLHFLHPGCISRQ*ICKLWDL*DRMLLPPPLFRIICSIPPPVRLV*TVLIPVQKS*EPPIRTRISLRPYHHTVEFLVDS*FHLSVLLYS*RGISSSLLPRRTF*TDFPRSGSTSSSGGRALAA*LL  12648

Range 8: 12679 to 12846 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 27/56(48%) 0/56(0%) Minus/Minus
Query      457  GTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALP  624
                GT RKLDNR RD    R+    L    * *E R   YR D*S   TN I TN   P
Subject  12679  GT*RKLDNRPRDIPRWRHPHHQLCLCP*R*EPRTALYRLD*SIRRTNWITTNTVPP  12846

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 8

Range 1: 12248 to 13039 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
549.1 bits(1192) 0.0 218/264(83%) 0/264(0%) Plus/Plus
Query       18  TRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY  809
                T L LY   KMSNHSW SLFKK+YGEADW+KYLSKSI AH+A++K LPD QLYGGR V+KS+FESA PRSFEQELGL +LSERDVGW KMCG+TVEEA YQ+TNP A+PI AEKCDPDVKTEGQKY+MEDV NFMR SNLD +D+IL EQCWSLSNSCGVLINPDDKERFV+LTFKNNEL+NDSSNANIDCRV DYLVYAMSLFN R+QKSQAGNISLYEKYC +IR YLE+TDL+FTSPDRIPLLTGILYDFCKEY++FYSTY
Subject  12248  TTLVLYHQTKMSNHSWGSLFKKYYGEADWRKYLSKSIVAHTANIKTLPDVQLYGGRTVKKSEFESATPRSFEQELGLLMLSERDVGWCKMCGITVEEAMYQITNPEAYPITAEKCDPDVKTEGQKYTMEDVMNFMRRSNLDINDKILAEQCWSLSNSCGVLINPDDKERFVALTFKNNELVNDSSNANIDCRVGDYLVYAMSLFNCRSQKSQAGNISLYEKYCAYIRTYLENTDLYFTSPDRIPLLTGILYDFCKEYNIFYSTY  13039

Range 2: 12247 to 13038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
446.0 bits(967) 0.0 201/264(76%) 0/264(0%) Minus/Minus
Query       17  YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRV  808
                YVE*K LYSLQKS*RMPVS GILSG+VK KSV SK  L+* QYFS*SE+LPACDF  L LNRD+A*T+*S TRQS+FALLESL NSLFL VR T RSLSSGLI+TPHELD+DQHCS KILS +S+LERRMKF TSSI YF PSVFTSGSHFSA IG A GFV WY ASSTV+PHIL  PTSRSL++ SPNSCSNDLG ADS SDF T+LPPYN* SG+ F  A  A +LL+RYF QSASP* FLNRL HEWFDIF+  *R S V
Subject  12247  YVE*KILYSLQKS*RMPVSNGILSGEVKYKSVFSK*VLM*AQYFS*SEMLPACDF*LLQLNRDIA*TK*SPTRQSMFALLESLTNSLFLKVRATNRSLSSGLIKTPHELDRDQHCSAKILSFISRLERRMKFITSSIVYFCPSVFTSGSHFSAVIGYASGFVIWYIASSTVIPHILHQPTSRSLNIRSPNSCSNDLGVADSNSDFFTVLPPYN*TSGKVFMLAVWATMLLERYFLQSASP*YFLNRLPHEWFDIFVWW*RTSVV  13038

Range 3: 12254 to 13039 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
283.8 bits(613) 0.0 135/262(52%) 0/262(0%) Minus/Minus
Query       24  VCGVEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES*  809
                VCG++D +LF +++ENA +* YP+ R E *IG F V  D+S IL ++RN+TRL LL   ++*GH VN*+I +ATVY+ V  +V+  VI + + ++ F I+G+NQN  RI *RPTL   + I  I*V  THEI ++FHRVFL  S +I I FF  DR    VR+LV CL HS+  HL P H+   *++ S FLLE  RS R K GL ++ST+VQL++   F+V  V  N  R VF PICLPV  FEQT P*VVRHL   VE+*
Subject  12254  VCGIKDIILFAEIIENAGE*RYPIGRSEI*IGIF*VSSDVSAILFVERNVTRLRLLTPTIE*GHSVN*VITHATVYVRVA*IVNQFVILKSESNKPFFIIGVNQNSARIG*RPTLFR*DFIIYI*VGTTHEIHHVFHRVFLPLSFHIWIAFFRCDRIRFRVRDLVHCLLHSYPAHLTPTHVPFT*HQKS*FLLERPRSRRFKFGLLHSSTAVQLNVRQSFYVSCVGYNALREVFPPICLPVVLFEQTSP*VVRHLRLVVEN*  13039

Range 4: 12396 to 13040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 109/215(51%) 0/215(0%) Minus/Minus
Query      166  CMWSRRHCTLYKSRRECQ*VRVSCQAT*RINRYFPSTS*YEYNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIE  810
                CMW++R+ TL ++ REC+*V VS +  * INRYF S  * + NT  +AK YP  TS  + *IGT RKL N  RDSL  R  +R*  RY * *E + V Y R *S+  TN I+TN    +FYH YL   DA*NS  LPS I   Q  H D IF L  +   GS* GTLP PQ   TS   P    L   V IPAR  SE   Q RTS QFY RT E
Subject  12396  CMWNKRYYTLCRNHRECR*VTVSYREK*NINRYFLSKF*CKRNTFRRAKCYPLATSDSYN*IGT*RKLSNHPRDSLCSRCLNR*PIRYS*K*EQQTVLYHRG*SKLRTNWIETNTVPLRFYHLYLGWNDA*NSSRLPSCISAPQFSHLDRIFPL*SDTLQGS*FGTLPPPQLSRTSYTNPRPVHLTSEVLIPARTTSESPIQIRTSSQFYRRTTE  13040

Range 5: 12237 to 12344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 32/36(89%) 0/36(0%) Minus/Minus
Query        7  GISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN  114
                GISSNLPPR  F*TDFPMSGSTSSS GRELA *LLN
Subject  12237  GISSNLPPRSTF*TDFPMSGSTSSSGGRELAL*LLN  12344

Range 6: 12243 to 13040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 135/266(51%) 0/266(0%) Plus/Plus
Query       13  KLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAXXXXXXXXXXXXXPHT  810
                +L  * ST   RCRTTHG+VCSK+ TGRQIG NT L+ L  T  T*K+ +  +CT VEL* SP L+ +LR  SSRN D+  * +  W G RC  *LW+RQ T SRT     S  KN I+M*+L+ +NTRWK   ISCV  T*I +I+   ++VGLY IR  F*L P I+N   L   +IT+  T + T+ *TVA  I *FT CPY     RS +RV FR  +SI L S  T K+PIY S    GY Y  AFS    KS +S  PHT
Subject  12243  ELQR*FSTTRRRCRTTHGEVCSKSTTGRQIGGNTSLRAL*PTQLT*KLCRTFSCTAVEL*RSPNLNRRLRGRSSRN*DF*C*VNGTWVGVRCAG*LWRRQCTKSRTLKRIRSQRKNAIQM*KLRGRNTRWKT**ISCVVPT*I*MIKS*RNSVGLYPIRAEF*LTPMIKNGLLLSLLRITNWLTIQATRT*TVAWVIT*FTLCPYSIVGVRSRKRVTFRSTKSIALTSELT*KIPIYISLLPIGYRYSPAFSMISAKSIISFIPHT  13040

Range 7: 12238 to 12786 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.0 bits(404) 0.0 99/183(54%) 0/183(0%) Plus/Plus
Query        8  FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RV  556
                F+SY+ASSLP DEDVEPLMGKSVQK+LRGGRLEEIP+*++C      +     S+VRR*NC+EVR *+  SE++RAGI T   K    G+  DV  +CG G+VP HEP   S  S KM S C++*  +I DGR  EFHASF  RY+**N    +LV I FV   D* R * T   S+  +*R+
Subject  12238  FKSYNASSLPPDEDVEPLMGKSVQKVLRGGRLEEIPL*EHCSPHS*HKNFAGRSVVRR*NCEEVRI*IGDSEVVRAGIRTSDVK*TGRGLV*DVRDNCGGGNVPNHEP*SVSDHSGKMRSRCEN*GAEIHDGRRDEFHASFQPRYK**NLSGTVLVSIQFVRSFD*PR**RTVCCSHF*E*RI  12786

Range 8: 12847 to 12996 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 25/50(50%) 0/50(0%) Plus/Plus
Query      617  HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTYWHS  766
                +VPI    +EV  G*+FAL +VL  +Q +L KYRFI H +  DT+T+ HS
Subject  12847  YVPIQL*ESEVASG*HFALRKVLRLHQNLLRKYRFIFHFSR*DTVTHRHS  12996

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 5

Range 1: 11748 to 12188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 63/147(43%) 0/147(0%) Plus/Plus
Query      369  DVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY  809
                DVKT G K++++ V  F++  N + ++  LVE CWSLSNSCG LINP D +RF+SL FK  ++ +D++ A +     DYL + ++L+      S +G   LY+ +  H+ KYLE+ DL + +P   PL+ GILYD C EY+   STY
Subject  11748  DVKTVGCKFTIQVVNEFVKKINGNVAEPSLVEHCWSLSNSCGELINPKDTKRFISLIFKGKDIADDNTEAVVSSSYLDYLSHCLNLYETCCLPSNSGKKQLYDDFLVHVIKYLENADLEYRAPRDNPLIAGILYDMCFEYNTLKSTY  12188

Range 2: 11424 to 11525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 11/34(32%) 0/34(0%) Plus/Plus
Query       36  RWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAH  137
                R+   + +SW  LF++F+G  +WK  LS++ + +
Subject  11424  RFSNPAGYSWGELFRRFFGGQEWKNLLSEAASTN  11525

Range 3: 11562 to 11705 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 15/48(31%) 0/48(0%) Plus/Plus
Query      180  GRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQL  323
                G ++ +  FESA   SF  EL L +   +     K+CG+ +  A   L
Subject  11562  GEVITRGAFESAPNNSFAYELSLLLTFNKTEEACKLCGVAIATALADL  11705

Range 4: 11834 to 11986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 24/51(47%) 0/51(0%) Minus/Minus
Query      455  R*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTK  607
                R*S   +   A + S   SL L +R+    +S GLI +PHELDKDQ CST+
Subject  11834  R*SK*EEETTASVLSSAISLPLKMREINLFVSLGLISSPHELDKDQQCSTR  11986

Range 5: 12074 to 12184 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 14/37(38%) 0/37(0%) Minus/Minus
Query      695  VE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFL  805
                V+   LYS   S R+P   G+  G   +KS  SKY +
Subject  12074  VDFNVLYSKHISYRIPAISGLSRGARYSKSAFSKYLI  12184

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 4

Range 1: 11643 to 12083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 65/147(44%) 0/147(0%) Plus/Plus
Query      369  DVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY  809
                DVKT G K++++ V  F++  N + ++  LVE CWSLSNSCG LINP D +RFVSL FK  +L   +  A +     DYL + ++L+      S +G  SLY+++  H+  YLE++DL + SP   PL+ GILYD C EY+   STY
Subject  11643  DVKTVGCKFNIQSVTEFVKKINGNVAEPSLVEHCWSLSNSCGELINPKDTKRFVSLIFKGKDLAESTDEAIVSSSYLDYLSHCLNLYETCNLSSNSGKKSLYDEFLKHVIDYLENSDLEYRSPSDNPLVAGILYDMCFEYNTLKSTY  12083

Range 2: 11319 to 11408 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 10/30(33%) 0/30(0%) Plus/Plus
Query       36  RWMKMSNHSWESLFKKFYGEADWKKYLSKS  125
                R+   +N+ W  LF++F+G  +WK  +S++
Subject  11319  RFSTPANYYWGELFRRFFGGQEWKNLMSEA  11408

Range 3: 11729 to 11818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 17/30(57%) 0/30(0%) Minus/Minus
Query      455  LNVRDTKRSLSSGLIRTPHELDKDQHCSTK  544
                L +R+T R +S GLI +P ELD+DQ CST+
Subject  11729  LKIRETNRFVSFGLINSPQELDRDQQCSTR  11818

Range 4: 11978 to 12082 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 16/35(46%) 0/35(0%) Minus/Minus
Query      704  YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSK  808
                YV+   LYS   S*RMP +KG+  G+  +KS+ S+
Subject  11978  YVDLSVLYSKHIS*RMPATKGLSEGERYSKSLFSR  12082

Carrot yellow leaf virus, complete genome

Sequence ID: Length: 16354 Number of Matches: 3

Range 1: 12363 to 12590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 25/76(33%) 0/76(0%) Plus/Plus
Query      582  IDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY  809
                I   V DYL + +++  +    S AG   + + +  H   Y  +TDL ++S ++IPLLTGI+Y+   ++ +F S+Y
Subject  12363  IGSSVGDYLSHCLTVLARSKLPSSAGETKMKDDWLAHCITYFSATDLNYSSKEKIPLLTGIIYELIDQHKMFLSSY  12590

Range 2: 12213 to 12320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 19/36(53%) 0/36(0%) Plus/Plus
Query      435  LDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTF  542
                L+  D+  +E CW LSNSCG +I+P D +RF S+TF
Subject  12213  LEIRDKTFLEHCWVLSNSCGEIIDPLDIKRFKSITF  12320

Range 3: 11793 to 11936 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 18/48(38%) 0/48(0%) Plus/Plus
Query       12  EVTRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKN  155
                E T+ +       + HSW  LFK+FYG   WK YLS + ++++  V N
Subject  11793  ETTQTSTMSTPTFAGHSWGCLFKRFYGVPVWKDYLSNTASSNATYVLN  11936

Nucleotide Sequence (423 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
43
86
129
172
215
258
301
344
387
423

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
266.4 820.0 27% 1.02e-70 39% NC_004724
222.8 375.1 33% 1.295e-57 62% NC_007448

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 8

Range 1: 4082 to 4501 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.4 bits(575) 0.0 109/140(78%) 0/140(0%) Plus/Plus
Query        2  ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK  421
                ESITDFAECKVAV+LEELGCLRANAEN+KIRNLAGDS+AAKLASEIVVDI+AKP++K A+H +S+  E K+  KP LRGG + GV++EF+DF+LSSASRLFSC+ADQQRIK+YVHYLD AVSFLD+NYEN+SFI+RVLSK
Subject   4082  ESITDFAECKVAVDLEELGCLRANAENEKIRNLAGDSMAAKLASEIVVDIEAKPVAKHAEHPKSEVSEKKEHAKPGLRGGSKAGVLKEFLDFVLSSASRLFSCVADQQRIKSYVHYLDTAVSFLDQNYENLSFIMRVLSK  4501

Range 2: 4081 to 4503 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.4 bits(418) 0.0 96/141(68%) 0/141(0%) Minus/Minus
Query        1  PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS  423
                P +RTR + E FS*F S+ +TA SR* T  L+RC*SA QLNKRDAD++ KS NS  TP   PPRK G   SF S  SL   SA L  G AS+STTISLA+FAA ESPARFRI SFSAFALK PNSS STATLHSAKSVIDS
Subject   4081  PFDRTRIMKERFS*F*SKNDTAVSR*WTYDLIRC*SATQLNKRDADERTKSRNSFKTPAFEPPRKPGFACSFFSLTSLFGCSACLATGFASMSTTISLANFAAIESPARFRIFSFSAFALKHPNSSRSTATLHSAKSVIDS  4503

Range 3: 4088 to 4324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 33/79(42%) 0/79(0%) Minus/Minus
Query        8  RTSTQARLRNIFRLARITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRD  244
                R STQA  R +      T RV     D F  Y+DHY  S  RC  V  E+ N  +  IR QT+ LFK+H +F F +I D
Subject   4088  RASTQAGFRVLLLFTHFTLRVFCVFSDRFRFYVDHYLASQFRCH*VASEVPNFFILGIRSQTSQLFKIHSYFAFGEICD  4324

Range 4: 4364 to 4501 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 24/46(52%) 0/46(0%) Minus/Minus
Query      284  FREDPQNK*NIFVIFI*ERDGHVKIVNVGLDALLIRYATKQARRGR  421
                FR +  N+  + VI I*ER   VK+++V L++LLIR+AT+QA RGR
Subject   4364  FR*NAHNEGEVLVILI*ERYSGVKVMDVRLNSLLIRHATEQA*RGR  4501

Range 5: 4083 to 4487 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 55/135(41%) 0/135(0%) Plus/Plus
Query        3  SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIRARRKMFLSRACVEVRGMELLENLLILFYRPRRACLVA*RISSASRPTFTILTWPSLS*MKITKMFHLFC  407
                ++S+I  N K  W LKS  V* RM +  +F  S  T+WQR+ L +*WS *  N SL+ + TR V   +R+   + ACVE R  E  ++  I F+RPR AC VA RI++    T   LT    S*++IT+     C
Subject   4083  NQSQISPNAK*LWILKSWDV*ERMPRMKKFGTSLATQWQRNWLAR*WST*KRNLSLNTQNTRRVK*VKRRSTRNPACVEARKPEF*KSSSISFFRPRHACSVAWRINNELSRTSITLTPLYRS*IRITRTSPSLC  4487

Range 6: 4081 to 4488 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 53/136(39%) 0/136(0%) Plus/Plus
Query        1  GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YVRDERCS*AALAWRSEEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLRSLS*RGRLFPR*KLRKCFIYFA  408
                G++H F  M S  G+*RV +FE EC +  +S+ R  L GSE  * +SGR+R  T  *   + EE*    E      LAWR E  S+ R+  F   VRV LV L  GS  +  +R L *   +  R +LR+  +++A
Subject   4081  GINHRFRRMQSSCGS*RVGMFESECRE*KNSEPRWRLNGSEIG*RDSGRHRSETCR*TRRTPEE*SE*KEGARETRLAWRLESRSFERVPRFRSFVRVTLVQLRGGSTTN*VVRPLP*HRCIVLRSELREPLLHYA  4488

Range 7: 4095 to 4274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 28/60(47%) 0/60(0%) Minus/Minus
Query       15  HSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYIPQN  194
                HSS     *R V  L RPL  *  SLP S +R  E +  +HS SN  TLQ P+ L I +N
Subject   4095  HSSGVLRV*RQVSLLCRPLSR*PISLPLSRQRGSEFFHSRHSLSNIPTLQDPQLLCIRRN  4274

Range 8: 4350 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 16/39(41%) 0/39(0%) Minus/Minus
Query      270  RNFHLGKRRPRQDSERRS*CAADPLCN*TSATRTIK*NQ  386
                RN  L   +  Q + R +*   DP  N*TS TRT + N+
Subject   4350  RNSDLRTIQRCQGNGRTT*FVVDPPRN*TSVTRTKERNR  4466

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 2

Range 1: 4099 to 4518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.8 bits(480) 0.0 94/140(67%) 0/140(0%) Plus/Plus
Query        2  ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK  421
                ESITDFAECKVAVEL+ELGCLRA AEN+KIRNLAGDS+AAKLASEIVVDID+KP  ++  +S S+  + +++ +P LRGG R GV+ EF+ F++SSA R+F    DQQRIK+YV +LD AVSFLD NYEN+SFI++VLSK
Subject   4099  ESITDFAECKVAVELDELGCLRAEAENEKIRNLAGDSIAAKLASEIVVDIDSKPPLRQMSNSSSENVDKREIQRPGLRGGSRIGVVGEFLHFVVSSALRIFKYATDQQRIKSYVRFLDSAVSFLDYNYENLSFIMQVLSK  4518

Range 2: 4098 to 4520 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 87/141(62%) 0/141(0%) Minus/Minus
Query        1  PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS  423
                P E T  IN+ FS*  S+KETA S+  T* L+RC*S   L  R A+   K  NS  TP L PPR  GL  S +S  S  E    L  GL S+STTISLAS AA ESPARF I SFSA ALKQPNSSSSTATLHSAKSVIDS
Subject   4098  PFESTCIINDRFS*L*SKKETAESKKRT*DLIRC*SVAYLKIRKAELTTK*RNSPTTPILEPPRNPGL*ISRLSTFSDDELLICLNGGLESMSTTISLASLAAIESPARFLIFSFSASALKQPNSSSSTATLHSAKSVIDS  4520

Nucleotide Sequence (887 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
89
178
267
356
445
534
623
712
801
887

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
279.2 1347.9 18% 1.139e-100 35% NC_004724
130.7 588.3 11% 1.181e-63 27% NC_007448

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 14

Range 1: 5984 to 6421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 93/146(64%) 0/146(0%) Minus/Plus
Query      448  VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW  885
                VR+YV+  LK RMR LGL NEHVV+SF E+VPLLLR+KLS TF+ RA+   KW  + CLSA+RREK FAL C+V LGFP+F R++GGV CD LLSS RR  DR+ V  K  CDA   G   LFH D +GDSTS+GLKGGGSQ+FLW
Subject   5984  VRKYVKNFLKSRMRGLGLRNEHVVNSFGELVPLLLRNKLSETFIYRAVPMSKWCWKVCLSAERREKFFALVCLVTLGFPYFARFLGGVVCDKLLSSLRRAYDRVIVFLKERCDAAMNGLRCLFHFDGNGDSTSAGLKGGGSQTFLW  6421

Range 2: 6464 to 6778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.6 bits(377) 0.0 69/105(66%) 0/105(0%) Minus/Plus
Query       91  WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV  405
                +AGCKCV+SH+++FFLCVSLVEEVN+IA+++G  SF SRP+SS LA  LLQPER V+YSGKL+T F F   ISPRVPL +K FFEW+  S LL+ +RRFLR++AV
Subject   6464  YAGCKCVFSHHDLFFLCVSLVEEVNMIAKILGCLSFFSRPISSALAFALLQPERFVEYSGKLSTTFLFFLKISPRVPLKIKGFFEWVAGSPLLRGVRRFLRLIAV  6778

Range 3: 6827 to 6862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 11/12(92%) 0/12(0%) Minus/Plus
Query        7  YPCQRAVPVIPS  42
                YP QRAVPVIPS
Subject   6827  YPSQRAVPVIPS  6862

Range 4: 5983 to 6759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
279.2 bits(603) 0.0 139/259(54%) 0/259(0%) Plus/Minus
Query      110  NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFXXXXXXXXXXXXLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT  886
                NLR   +R L   HSKN     GTRGEI ++N+  V NFPE ST+LSG +R++AS ++ GRE  +K P   AI FTSST ET +KN   CE THLQPA  K+SA+R  R N+  RN CEPPPFKP DVESP  S+ NK+  P   ASH   + T  RS  RR +D+ LSH TPP  R K G P  T H  AK+FS RSAD+    HHF    AR   V DNL R+SSGT S  E TTCS L PK RMR FK   TY RT
Subject   5983  NLRTPLNRGLPATHSKNPLILRGTRGEILRKNKKVVLNFPEYSTNLSGCKRANASADDIGREKNDKHPRIFAIMFTSSTKETHKKNRSWCEKTHLQPA*PKDSAKRTKRNNKPHRNVCEPPPFKPADVESPFPSK*NKQRNPFMAASHRSFRKTITRSYARRNEDKSLSHTTPPKKRAK*GNPRVTKHTSAKNFSRRSADKHTFQHHFDMGTAR*MKVSDNLFRKSSGTNSPNEFTTCSFLRPKPRMRLFKKFLTYLRT  6759

Range 5: 6829 to 6864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 9/12(75%) 0/12(0%) Plus/Minus
Query        5  VDGMTGTALWHG  40
                +DG+TGTALW G
Subject   6829  LDGITGTALWLG  6864

Range 6: 5984 to 6262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 36/93(39%) 0/93(0%) Plus/Minus
Query      607  KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P*ATHAIL*KSLNIFTH  885
                ++I  +P   T E  K+Q D   E E+    +S QA F  P + GDR+I +  RQL+ *+ WH L +R H++FV+*    HA  *K  N+  H
Subject   5984  ELIAHYPTQKTSEVGKSQSD*AHEREKLFPPLS*QAHFPAPLRHGDRTIDESFRQLVS*EQWHQLPERIHYMFVS*TQTAHATF*KVFNVLAH  6262

Range 7: 6596 to 6859 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 37/88(42%) 0/88(0%) Plus/Minus
Query       10  WYDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRS*LSGVVDTPFGLKEKQRQ  273
                WY+RH  LA +T     ++SL SKVQ H + AK+  N    R   +PL+K F  + +ARR+ EKK+K R+ LS V++ P GL + + Q
Subject   6596  WYNRHGPLAGVTTISRSQSSLPSKVQLHRDQAKESPNAPQ*RTTGHPLEKPFDLERHARRNFEKKQKSRAQLSRVLNEPLGL*KSECQ  6859

Range 8: 6275 to 6574 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 44/100(44%) 0/100(0%) Plus/Minus
Query      295  DERETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSS  594
                +ER+TP N RD+V+L +* DA ++ +VVR NALTT   Q  R+T    *QAP KRLRA+  *T RC I I + M+ T       +T  L  +  +V ++S
Subject   6275  EERQTP*NFRDHVHLFN*GDA*EK*IVVRENALTTRVAQR*RKTH*T**QAP*KRLRATAL*TGRCGITIPVKMK*TTQPIHGCVTSLL*KNYHTVVRTS  6574

Range 9: 6346 to 6861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 66/172(38%) 0/172(0%) Minus/Plus
Query        8  FVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHTI  523
                F+  *  W F+I  FK   LA VS+  V    A  A   L  L*VR LA + I  +RL+S  G+  RE+ R F+  L      AG  S + R+V  +L KV +  FV  +N S+R +  ++VF V     S +  S++ S    E EPSKEER+  + W L  PK  AG+TI
Subject   6346  FISF*REW*FHICRFKGRWLANVSMGLVITFSAFCAIFGLRGL*VRFLAPRSIFLMRLLS*RGEHDRENSRVFVVLLTTNIISAGIRSFTAREVR*VLWKVEHDFFVFSQNFSSRASQDQRVFRVGGR*SSIEGRSEIPSLDRGEAEPSKEERTENEKWWLPQPKGRAGYTI  6861

Range 10: 5985 to 6245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 34/87(39%) 0/87(0%) Minus/Plus
Query      624  CVNMFKDF*RIACVA*G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AG  884
                C +  K F*++AC    * TN  *+    WCH  Y  SC     I RSP  +G  K AC+L   ++ S S  *S W F  S V   G
Subject   5985  CASTLKTF*KVACAVWV*ETNM**IRSGSWCHCSYETSCLKLSSIVRSPCRSGAGKCACQLSGGKSFSRSCA*SLWDFPTSLVFWVG  6245

Range 11: 6000 to 6491 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 58/164(35%) 0/164(0%) Plus/Minus
Query      378  ASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTLSYACDPLKVF  869
                A KRTYN  + + A++A   +T   ET AS   LN  M N H   N  N+ + +   H       S G+T V      Y T P   N    E P  L TR R+     Q T    +T S     D     TT  V  VAP+P+ NS  VR+L  + ACD LK F
Subject   6000  ARKRTYNPRSPKIAQNALNVITSPIETFASHRPLNRQMWNHHSRQNEINNATHSWLRHIAPLEKLSHGRTHVVMKTRAYRTLPHPKNERSREIPE*LSTRARKTFPAAQLTSTLSSTTSTWGPHDR*KFQTTCFVRAVAPTPRTNSLHVRFLDPNRACDFLKSF  6491

Range 12: 6606 to 6860 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 34/85(40%) 0/85(0%) Plus/Minus
Query        9  MV*PAQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMP*LTFRSSRHTFRVEGE  263
                MV*PA+ FG  N H     LSSFEGS S +  E   E    E     T+KT      R E+F ++TK    TF+S++ T R   E
Subject   6606  MV*PARPFGWGNHHFSFSVLSSFEGSASPRSSEGISERPSIEDYRPPTRKTL*S*EAREEKF*EKTKKSCSTFQSTQRTSRAVKE  6860

Range 13: 6558 to 6860 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 42/101(42%) 0/101(0%) Minus/Plus
Query        9  GVSLSSRGRFLLCWRCFSFNPKGVSTTPES*LRHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELCRSYH  311
                GV  SS  ++   W    ++P+G  +T ES* R F FFS+ L A     K F SG    L *  F   FA* +*+*TFE RE   + + V  AK  CR YH
Subject   6558  GVCRSSHDQYHQRWHSLFYSPRGSLSTLES*ARLFCFFSKFLLACLSRSKGFSSGWPVVLY*GAFGDSFA*SR*S*TFEGRED*EREMVVTPAKGPCRLYH  6860

Range 14: 6342 to 6518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 27/59(46%) 0/59(0%) Minus/Plus
Query      351  IVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFAS  527
                +V  I+  M I H  V*+  AR RF+GAC     V R+    +VVSAF+RTT Y  +AS
Subject   6342  VVYFILTGMVIPHLPV*RAVARKRFYGACYYV*CVLRYLWATRVVSAFSRTTIYFSYAS  6518

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 9

Range 1: 5998 to 6435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 65/146(45%) 0/146(0%) Minus/Plus
Query      448  VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW  885
                VREY    L+ RMR+LGL+N+ VV+SFA+++P+L++ K+S +FL      +K +S  C SA+RREK  AL C+V L  PFF+R +G  AC+ L+SS RR  +R+KV  K+ C ++      LF  D    S S+GL+GG S+  L+
Subject   5998  VREYALSSLRCRMRALGLNNDFVVNSFADLLPMLVKRKVSNSFLSSVYRPIKSFSYMCASAERREKFLALVCLVGLSLPFFVRIVGAKACEELVSSARRFCERVKVFLKQKCVSLLSFLSCLFFSDAGDSSASAGLRGGASRVTLF  6435

Range 2: 6478 to 6780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 50/101(50%) 0/101(0%) Minus/Plus
Query      103  WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLR  405
                W G K + SH+N+ FLC ++V++VNV  + +GG SF  +PVSSV A +LLQP+R   YS KL TAF F+   SPR P L+K FFE +  S++ K++R+ LR
Subject   6478  WEGLKLLLSHHNLLFLCFAMVDDVNVFVKALGGLSFFVQPVSSVFAAVLLQPDRFAGYSEKLVTAFEFILKCSPRAPALLKTFFEGVANSTVSKTVRKLLR  6780

Range 3: 6800 to 6871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 10/24(42%) 0/24(0%) Minus/Plus
Query       12  TFERREVSGQRVGVIRAKELCRSY  83
                +FE+ E   Q V V   ++LC SY
Subject   6800  SFEKEEGCVQTVRVFTGRKLCPSY  6871

Range 4: 6357 to 6773 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 50/139(36%) 0/139(0%) Plus/Minus
Query      110  NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR  526
                + R +F   L    SKN  + +G RGE  + N  AV +F E   +LSG + ++A+TEETG   KE+PP  L  TFTSST    + N L C+ +   P+  K+      R  R      + PP  P D E   +S+ NK+
Subject   6357  SFRTVFDTVLFATPSKNVLSSAGARGEHFRMNSKAVTSFSEYPANLSGCKSTAANTEETGCTKKERPPKALTKTFTSSTIAKHKNNRLWCDRSSFSPSHPKDKRALARRTKRWNSVTRDAPPLSPADAELSPASEKNKQ  6773

Range 5: 6165 to 6269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 18/35(51%) 0/35(0%) Plus/Minus
Query      614  SHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQV  718
                SHA  P  R K G+ N T H RAK+FS RSA+  +
Subject   6165  SHAFAPTMRTKKGRLNPTKHTRAKNFSRRSAEAHI  6269

Range 6: 5997 to 6092 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 18/32(56%) 0/32(0%) Plus/Minus
Query      791  GTISAKELTTCSLLNPKLRMRSFKSL*TYSRT  886
                G+ SAKE TT SL  P  RMR  + L  YSRT
Subject   5997  GSKSAKEFTTKSLFKPNARMRHRRELRAYSRT  6092

Range 7: 6411 to 6872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 41/154(27%) 0/154(0%) Minus/Plus
Query       11  WRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHT  472
                WR+A  ++ P+ +         +GR     +A   I+ +    R  +R  +   G  F  A GFF   +++ +T ++  +LR+  Y   +  +  ++R   ++ VF*    Q   K  SK SS    E   SK+ R   +  G S  +SCA HT
Subject   6411  WRVASDAIPPLRSPRECSFIFRVGRAEATPIAP*PIIFMFCDGRRCERLCQGFGGSFFLCATGFFRVRSSTFATGQIRGVLREACYSFRIHPKVFASRACATQNVF*GRGEQYCIKNRSKTSSILSEEV*ASKKRRVACRR*GFSPAESCARHT  6872

Range 8: 6694 to 6870 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 24/59(41%) 0/59(0%) Plus/Minus
Query       13  YDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARR  189
                YD HS L   T T+C + S  SK++     +KK SN  *     + LKK F *+  ARR
Subject   6694  YDGHSFLPVKTLTVCTQPSSFSKLKLPH*ESKKFSNGF*YSTVRHALKKRFE*RRRARR  6870

Range 9: 6538 to 6660 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 14/41(34%) 0/41(0%) Plus/Minus
Query      223  LSGVVDTPFGLKEKQRQHRRNRPRDERETPDNSRDNVYLLD  345
                L GV      L++   +H RNR   ER+TP +   +V+++D
Subject   6538  LLGVPRESVRLQKYCCEHGRNRLHKERKTPQSLDKDVHIVD  6660

Nucleotide Sequence (314 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
314

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
241.2 811.5 42% 2.438e-63 49% NC_004724
232.0 712.2 44% 1.398e-60 42% NC_007448
180.2 419.4 45% 5.398e-45 39% NC_001598
176.1 288.1 37% 9.411e-44 58% NC_022978
156.9 265.1 33% 5.846e-38 59% NC_027712

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 6

Range 1: 10999 to 11310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
241.2 bits(520) 0.0 100/104(96%) 0/104(0%) Minus/Plus
Query        3  CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE  314
                CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALSACNLINK+SANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDR FL HLFSLTSLE
Subject  10999  CSVPANYDSVQRNFTDQCVSLSGYQCVYMVNEPSAAALSACNLINKKSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRTFLTHLFSLTSLE  11310

Range 2: 11001 to 11312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.6 bits(403) 0.0 82/104(79%) 0/104(0%) Plus/Minus
Query        1  GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE  312
                GS +VREKR  +K LSTSLPP+F+SPPEARTTNVLLR*E++DTSKVPPPKSYTA+FAD L I+L ADKAAA+GSL++YTH *PLKETH SVKFL TLS* AGTE
Subject  11001  GSKDVREKR*VRKVLSTSLPPKFKSPPEARTTNVLLR*EIIDTSKVPPPKSYTAKFADFLFIRLHADKAAAEGSLTMYTH**PLKETH*SVKFL*TLS*FAGTE  11312

Range 3: 11001 to 11312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 51/104(49%) 0/104(0%) Minus/Plus
Query        1  FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT  312
                F A +L   ++EFH  +RF EWL M V+GQRT    FIS+Q ++ E+ E G IRFW W+F RV++FLPQQ++  ARF  R + GRK C Q+     FFS  +RT
Subject  11001  FSASEL*QCSEEFH*SVRFLEWLSMCVHGQRTFRGCFISVQSDKQEVGELGCIRFWRWDFRRVYYFLPQQYIRSARFWRRFKFGRKGC*QNLSDSSFFSNILRT  11312

Range 4: 10999 to 11265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 46/89(52%) 0/89(0%) Plus/Minus
Query       48  HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**SCC*WFVVHIHALVTTQRNALVGEIPLHAIVIGGHRT  314
                +I S+QI +S  SAH++ +VAV N+ HV+S T+KIVY Q+R  L+  IA **S    FV H+H L+TTQ NAL+ EIPL+ ++I  H T
Subject  10999  NIPSSQI*ISSRSAHYECIVAVGNNRHVESPTSKIVYSQVRRLLVYQIAR**SSRGRFVDHVHTLITTQGNALISEIPLNTVIIRWH*T  11265

Range 5: 11000 to 11263 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 46/88(52%) 0/88(0%) Minus/Plus
Query       50  VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM  313
                V+C  I    +GIS  +AF *VV N C W+TN  + LYQ AI*  R +R W YTIL V L TC  F TAT    CAL  E *IW E M
Subject  11000  VQCQRIMTVFRGISLISAFP*VVINVCTWSTNLPRLLYQRAI**TRSRRTWLYTILEVGLSTCLLFPTATIHS*CALLEEI*IWEEGM  11263

Range 6: 11000 to 11269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 44/90(49%) 0/90(0%) Plus/Minus
Query       44  CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN  313
                C H F P+  L +KRA +  CCG+K* TR+K H QNRI P S  S   +C LIK    VR P T I NHS+KR  +*NS     N  A N
Subject  11000  CQHPFLPNLNLLQKRALRMYCCGRK**TRRKSHLQNRIQPSSPTSCLSDCTLIKQPRKVR*PCTHIDNHSRKRTDQ*NSSEHCHNSLALN  11269

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 7

Range 1: 10991 to 11302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.0 bits(500) 0.0 96/104(92%) 0/104(0%) Minus/Plus
Query        3  CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE  314
                CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALS CN I ++SANLAVYDFGGGTF+VSIISYRNNTFVVRASGGDLNLGGRDVDRAFL HLFSLTSLE
Subject  10991  CSVPANYDSVQRNFTDQCVSLSGYQCVYMINEPSAAALSVCNSIGRKSANLAVYDFGGGTFNVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLTHLFSLTSLE  11302

Range 2: 10993 to 11304 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.7 bits(364) 0.0 77/104(74%) 0/104(0%) Plus/Minus
Query        1  GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE  312
                GSN+V+EKR  + A STSLPPRF+SPPEARTT VLLR EM+DT KVPPPKS TA+FAD L I+L  + AAA+GSL IYTH *PL ETH SVKFL TLS*LAGTE
Subject  10993  GSNDVKEKRCVRNARSTSLPPRFKSPPEARTTKVLLRYEMIDTLKVPPPKS*TAKFADFLPIELHTESAAAEGSLIIYTH**PLSETH*SVKFLWTLS*LAGTE  11304

Range 3: 10993 to 11223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 37/77(48%) 0/77(0%) Minus/Plus
Query       82  FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARF  312
                FG RQLR*  KEF+  +RF + L + VY QR  S     +QF+ *E+ + G +RF WW+ *RV+HF+ QQH   A F
Subject  10993  FGTRQLR*CPKEFY*SVRFTQRLSVCVYDQRAFSRCTFCVQFDW*EVRKLGRLRFRWWDL*RVYHFVSQQHFRCASF  11223

Range 4: 10992 to 11255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 38/88(43%) 0/88(0%) Plus/Minus
Query       50  HLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN  313
                H F  D    +K A + CCC  K* TR + HH+NR  P    SY  NC      L  R  YT   +   KR  +*NSF  YRNWR PN
Subject  10992  HPFHRDLNHLQKLAQRKCCCDTK**TR*RSHHRNRKRPSLRTSYQSNCTQKVQRLKAR*SYTHTDSR*VKRTDQ*NSFGHYRNWRVPN  11255

Range 5: 11138 to 11257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 19/40(48%) 0/40(0%) Plus/Minus
Query       48  HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQI  167
                +I S +I ++  S+H++ VVA+RND HVK  TT+IV  Q+
Subject  11138  NIPSTEI*ITSRSSHNESVVAIRNDRHVKGPTTEIVNGQV  11257

Range 6: 10991 to 11083 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/31(58%) 0/31(0%) Plus/Minus
Query      222  VVHIHALVTTQRNALVGEIPLHAIVIGGHRT  314
                V HIH L+  + NAL+ +IPL  IVIGG+RT
Subject  10991  VDHIHTLIAAE*NALISKIPLDTIVIGGYRT  11083

Range 7: 10992 to 11255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 37/88(42%) 0/88(0%) Minus/Plus
Query       50  VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM  313
                VR PPITI  KGI   +AF     + CI +T+ Q   +  AI  +   + W +TI VV  LTC SF  ATT   C L    *I  E M
Subject  10992  VRYPPITIVSKGILLISAFHSAAISVCI*STSLQPLHFLCAIRLVGSPQTWPFTISVVGPLTCLSFRIATTLSLCELLEVI*ISVEGM  11255

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 4

Range 1: 10055 to 10363 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.2 bits(387) 0.0 71/103(69%) 0/103(0%) Minus/Plus
Query        6  CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSL  314
                CSVPANY+ +QR+FT+ CV+LSGY CVYM NEPSAAALSAC+ I   ++ + VYDFGGGTFDVS+IS  NNTFVVRASGGD+NLGGRD+D+AF+ HL++   L
Subject  10055  CSVPANYNCLQRSFTESCVNLSGYPCVYMVNEPSAAALSACSRIKGATSPVLVYDFGGGTFDVSVISALNNTFVVRASGGDMNLGGRDIDKAFVEHLYNKAQL  10363

Range 2: 10057 to 10332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 57/92(62%) 0/92(0%) Plus/Minus
Query       37  KALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE  312
                KALS S PP+F SPPEARTT VLL  E+ +TS VPPPKSYT       LI  QA+ AAADGSL++ T  *PL+ T  SVK LC   *LAGTE
Subject  10057  KALSMSRPPKFMSPPEARTTKVLLSAEITETSNVPPPKSYTRTGEVAPLILEQAESAAADGSLTM*TQG*PLRLTQLSVKDLCKQL*LAGTE  10332

Range 3: 10057 to 10332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 36/92(39%) 0/92(0%) Minus/Plus
Query       37  FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSF  312
                F   QL+  AK F+R +   EWLP+ ++G R +      L  NQ        +RF  WN *R   F  QQH CGARF    E G  R  Q F
Subject  10057  FSPCQLQLFAKVFYRKLCQSEWLPLCLHG*RAVGCGAFCLF*NQRRHFTRSRVRFRRWNV*RFRDFSAQQHFCGARFGR*HELGWSRHRQGF  10332

Range 4: 10056 to 10307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 33/84(39%) 0/84(0%) Minus/Plus
Query       62  VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IW  313
                V+  P TI CKG+ P    +*V T    W T+ + + + L + S      +  TI  VE LT P F  +TT LWCAL   T* W
Subject  10056  VQSLPTTIVCKGLLPKVVSI*VATPVFTWLTSRRLRRFLLVLESKAPLHPFSCTISEVERLTFP*FQRSTTLLWCALREVT*TW  10307

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 2

Range 1: 10160 to 10468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 70/103(68%) 0/103(0%) Minus/Plus
Query        6  CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSL  314
                CSVPANY+ +QR+FT+ C++LSG+ CVYM NEPSAAALSAC+ I   +  + VYDFGGGTFDVS++S  NNTFVVRASGGD+NLGGRDVDRAFL +L++   L
Subject  10160  CSVPANYNCLQRSFTENCINLSGFTCVYMINEPSAAALSACSKIKGATLPVLVYDFGGGTFDVSVLSALNNTFVVRASGGDMNLGGRDVDRAFLEYLYNKAHL  10468

Range 2: 10162 to 10449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 56/96(58%) 0/96(0%) Plus/Minus
Query       25  RWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE  312
                R+ + ALSTS PPRF SPPEARTT VL + +  +TS VPPPKS T+  +   LI  QA+ AAADGSL + TH  PLK   +SVK LC   *LAGTE
Subject  10162  RYSRNALSTSRPPRFMSPPEARTTKVLFKADSTETSNVPPPKS*TSTGSVAPLILEQAESAAADGSLIM*THVKPLKLMQFSVKDLCKQL*LAGTE  10449

Tobacco virus 1 isolate AnHui, complete genome

Sequence ID: Length: 15395 Number of Matches: 2

Range 1: 9661 to 9951 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 64/97(66%) 0/97(0%) Minus/Plus
Query       24  CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHL  314
                CSVPA ++S+QRNF  +CV+LSGY C+++ NEPSAAA SA   I K    + VYDFGGGTFDVS +S RNNTFVV+ASGGD+NLGGRDVDRA L ++
Subject   9661  CSVPAAFNSIQRNFIMECVTLSGYHCLHIINEPSAAAFSAFRKIPKDMNFIMVYDFGGGTFDVSAVSVRNNTFVVKASGGDMNLGGRDVDRALLEYV  9951

Range 2: 9663 to 9938 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 54/92(59%) 0/92(0%) Plus/Minus
Query       37  KALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE  312
                +ALSTSLPP+F SPP+A TT VLLR E  +TS VPPPKSYT      L I L A+KAAA+GSL I   W PL+ TH  +KFL      AGTE
Subject   9663  RALSTSLPPKFMSPPDALTTKVLLRTETAETSNVPPPKSYTMIKFISLGIFLNAEKAAAEGSLMICKQWYPLRVTHSIMKFL*IELNAAGTE  9938

Nucleotide Sequence (613 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
62
124
186
248
310
372
434
496
558
613

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
386.4 1369.3 21% 1.248e-106 38% NC_004724
358.5 1015.5 21% 3.236e-98 40% NC_007448
166.9 243.6 26% 1.458e-40 39% NC_001598
176.6 266.2 32% 1.85e-43 37% NC_022978
139.9 139.9 25% 2.005e-32 42% NC_013007

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 10

Range 1: 11386 to 11988 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
386.4 bits(837) 0.0 171/201(85%) 0/201(0%) Plus/Plus
Query        6  EGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT  608
                +G+DDK+EDVRVNKSILT VMLPYVNRTL ILE+TLKSYAKNMGG+R+VKCDLVLIGGSSYLPGLEDILSKHR++DRILKV+DPRAAVAVGCALYSSCLSGSQGLLL+DCAAH+I+IA MSC QIICAPAGAPIPFSGTTPLYL +AN+NS RQ+AVFEGEY+KCP+NRKICGSNIKF DIGV S+SY+PITFYLDV+I++
Subject  11386  KGSDDKKEDVRVNKSILTTVMLPYVNRTLNILEATLKSYAKNMGGLRSVKCDLVLIGGSSYLPGLEDILSKHRRIDRILKVADPRAAVAVGCALYSSCLSGSQGLLLVDCAAHTIAIAGMSCDQIICAPAGAPIPFSGTTPLYLPKANRNSQRQIAVFEGEYVKCPRNRKICGSNIKFLDIGVTSVSYSPITFYLDVTISS  11988

Range 2: 11430 to 11975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
330.1 bits(714) 0.0 138/182(76%) 0/182(0%) Minus/Minus
Query       50  TSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRI  595
                TS+*KV+G YE L+TP+S+N MF+PQIFLFLGHF YSPSNTA *RCEFLLA  KY GVVPE G+GAPAGAQ+IW QL+ AI ++*AAQS +N+PCEPERHDEYSAQPTATAARGS TF+IRS  RCFD++SS+PGR E+PPISTKSHLTLR PP+F AYD  V SKIF+VL T*GSIT VRI
Subject  11430  TSK*KVMGEYETLVTPISRNLMFEPQIFLFLGHFTYSPSNTAI*RCEFLLAFGKYNGVVPEKGIGAPAGAQIIWSQLIPAIAMV*AAQSTNNSPCEPERHDEYSAQPTATAARGSATFNIRSIRRCFDKISSKPGRYEEPPISTKSHLTLRNPPIFLAYDLSVASKIFKVLLT*GSITVVRI  11975

Range 3: 11386 to 11796 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 80/137(58%) 0/137(0%) Minus/Minus
Query        6  RERNGSSGRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILPFIISPF  416
                RE N SS  SAN+LVTAH  Y D VS AID *QPL*T +AR + RTTDRD  S + +F YSI+ SVFR D+  T KIRR  + +*+A N   PTH+F VR    F + *SSI VREHN  +NTFIH NIL FI++PF
Subject  11386  REGNRSSSWSANNLVTAHTGYCDGVSRAID**QPL*T*KARRI*RTTDRDRRSGISDFQYSIDSSVFR*DIF*TRKIRRTTD*H*VAFNAP*PTHIFGVRFKCCFQNI*SSIDVREHNSSENTFIHSNILLFIVAPF  11796

Range 4: 11839 to 11967 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/43(42%) 0/43(0%) Minus/Minus
Query      459  IEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM  587
                IE D  V +A   ++ +F V   +FS+ GT ++FTFE+C+LT+
Subject  11839  IESDG*V*NACDTDIKKFNV*TANFSISGTLHVFTFEYCDLTL  11967

Range 5: 11387 to 11797 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 71/137(52%) 0/137(0%) Minus/Minus
Query        7  PRTEWELRPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPL  417
                PR E EL+ ERK*SG SS  L R+CE RNR +T  VN +GT + AHNRPR  L  ++L +FD+ VGVS     + ED K  +  L+R *   +HP F RT    + ++L+FY RKGA*  *EYFYS *HPPFY + L
Subject  11387  PRRE*ELQLERK*SGHSSYRLLRWCEPRNRLITALVNLKGTTNIAHNRPRPPLGDQRLSIFDRFVGVSIRYLLNPEDTKNHRLALSRI*RSVTHPYFWRTI*VLLPKYLKFY*RKGA*Q**EYFYSL*HPPFYRRSL  11797

Range 6: 11849 to 11911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 11/21(52%) 0/21(0%) Minus/Minus
Query      469  CSTHRFFCFWDILYIHLRTLQ  531
                C   +FF FWD   IHLR L+
Subject  11849  CLNRKFFYFWDTSRIHLRILR  11911

Range 7: 11400 to 11798 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 66/133(50%) 0/133(0%) Plus/Plus
Query       20  *KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLG  418
                *KGGC* E*KYS+  YAPLR+*N K       +VR+K+GW  + *+R S +   F+SS    + +ETPT+ SN +S    S  RGRLCA+ +VP  FT  V  RLR S + +S +EL PD+LRS  SS+S+LG
Subject  11400  *KGGC*SE*KYSHYCYAPLRQ*NFKYFGSNT*IVRQKYGWVTER*MRLSANRWFFVSSGFRRYLIETPTNRSNIESR*SPSGGRGRLCAIFVVPFRFTRAVISRLRGSHHRNSRYEL*PDYLRSSWSSYSLLG  11798

Range 8: 11856 to 11966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 14/37(38%) 0/37(0%) Plus/Plus
Query      476  VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLL  586
                +RR*I ++SQK KNL  +H I  +   +  +  +H L
Subject  11856  IRR*IREVSQK*KNLRFKH*IS*YRCHKRFILTHHFL  11966

Range 9: 11495 to 11722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 43/76(57%) 0/76(0%) Plus/Plus
Query      115  SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL  342
                +RT K WVG   L+A * *   L IF V + S RNTD+ IEY*K    E++SRSVVR   RA +VH+GCY*SIA+L
Subject  11495  NRTPKIWVGYGALNAT*C*SVVLRIFRV*KISYRNTDESIEY*KSLIPERRSRSVVRYIRRAFQVHKGCY*SIARL  11722

Range 10: 11387 to 11473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 21/29(72%) 0/29(0%) Plus/Plus
Query        7  KGLMIKGRMLG*IKVFLRQLCSLT*IEL*  93
                KG  IK RML *IKVF   LCSLT IEL*
Subject  11387  KGATIKRRMLE*IKVFSLLLCSLTSIEL*  11473

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 7

Range 1: 11381 to 11980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
358.5 bits(776) 0.0 156/200(78%) 0/200(0%) Plus/Plus
Query        9  GADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT  608
                G D ++EDVRVNK+ILT+VMLPYVNRTLKIL+STLKSYA++M     +KCDLVLIGGSSYLPGL D+L KHR VDR+L+VSDPRAAVAVGCALYSSCLSGS GLLLIDCAAH+++IAD SCHQI+CAPAGAPIPFSG+ PLYLARANKNS R++AVFEGEY+KCPKNRKICG+N+KF DIGV S SY P+TFY+D SI++
Subject  11381  GIDGRKEDVRVNKNILTSVMLPYVNRTLKILDSTLKSYARSMNESAQIKCDLVLIGGSSYLPGLADVLKKHRSVDRVLRVSDPRAAVAVGCALYSSCLSGSGGLLLIDCAAHTVAIADRSCHQIVCAPAGAPIPFSGSMPLYLARANKNSQREIAVFEGEYVKCPKNRKICGANVKFFDIGVASTSYEPVTFYMDFSISS  11980

Range 2: 11422 to 11973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
306.2 bits(662) 0.0 132/184(72%) 0/184(0%) Minus/Minus
Query       50  IETSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRI  601
                +E S *KV G+YE+L TP+S+N  F PQIFLFLGH  YSPSNTA  RCEFLLALAKYRG++PENG+GAPAGAQ IW*QL+SAI  +*AAQSISNNP +PERH+EY+AQPTATAARGSET   RST RCF R S+RPGR +DPPISTKSHL   +  +  AYDFKV+S+I  VLFT*GSIT VR+
Subject  11422  MEKSI*KVTGSYEVLATPISKNLTFAPQIFLFLGHLTYSPSNTAISRCEFLLALAKYRGILPENGIGAPAGAQTIW*QLLSAIATV*AAQSISNNPPDPERHEEYNAQPTATAARGSETLKTRSTLRCFFRTSARPGRYDDPPISTKSHLICALSFILLAYDFKVESRILSVLFT*GSITEVRM  11973

Range 3: 11402 to 11761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 55/120(46%) 0/120(0%) Minus/Minus
Query       30  SANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNI  389
                SANDLVT  VRY D VS  +DQ* P  + EAR +   TD     R+ N * +I+  +  Q+V QTGKI R   ++*IAL++    H   VRL* R *+   S+H+REH+  +N FI+ NI
Subject  11402  SANDLVTTSVRYSDGVSRTVDQ**PSGSGEARRI*CATDGHSSPRIRNP*DAIDAPMLFQNVRQTGKI*RSSYKH*IALDLRTFVHTPSVRL*GRI*NLKRSVHIREHHRSENVFIYSNI  11761

Range 4: 11831 to 11974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 21/48(44%) 0/48(0%) Minus/Minus
Query      459  DRNIQIEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM  602
                D  I IEGDR VR A H+ + +F V  TD  V     +F F+H N T+
Subject  11831  DGEIHIEGDRLVRSARHSYIKKFNVCSTDLPVLRALNVFPFKHGNFTL  11974

Range 5: 11395 to 11799 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 54/135(40%) 0/135(0%) Plus/Plus
Query       23  KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLGYYA  427
                KG C* +*K+S+   APL E N+ + R   KVVR ++       VRFS    + +SSRSGG   +     S  K F  S     RL  +  VPL    V+TDRL  S    SG +LSP+ LRS RS++ +   YA
Subject  11395  KGRC*SK*KHSHFGDAPLCEQNA*DSRFDLKVVR*EYERKCANQVRFSAYRRIVISSRSGGRSEKASERRSRLKGFGSSGCCGRRLRIIFFVPLRIRRVITDRLCGSHRRYSGQKLSPNRLRSSRSTNPIFREYA  11799

Range 6: 11878 to 11964 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 13/29(45%) 0/29(0%) Plus/Plus
Query      506  KQKNLWVEHKILRHWRDEHLVRAYHLLSG  592
                +Q++LW +  I  +   EH VRA HLL G
Subject  11878  EQEDLWSKR*IF*YRSGEHFVRACHLLYG  11964

Range 7: 11373 to 11762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 56/130(43%) 0/130(0%) Minus/Minus
Query        1  ERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPLRK  390
                ERK  GD+ CPL R CE  +RSV T    RGT +   NR     E  K L  D+     +  PPDRED       LNRT*         RTTL+  L    F S KGA   *E FY  *H PF+H+ L K
Subject  11373  ERKRFGDNFCPL*RRCEPHSRSVITLRIRRGTKNIMRNRRPQQPEDPKPLRRDRRSDAFSERPPDREDMTILL*ALNRT*FAHFRSYS*RTTLRSNLES*AFCSHKGASPK*ECFYLL*HLPFFHRYLSK  11762

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 2

Range 1: 10460 to 11044 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 80/195(41%) 0/195(0%) Plus/Plus
Query       24  REDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT  608
                R DV VN S L  V  P+V RT+KI++   + Y  +M    NVK  L+++GGSSYLPGL   LS    VD  L + D RAAVA GCALYS+CL     +LL+DCAAH++SI+   C  I+C PAG+PIPF+G   + +  +N ++    A+FEG+++KC  N++I   ++   ++GV   +   +   L++++++
Subject  10460  RVDVLVNVSELAEVAAPFVERTIKIVKEVYEKYCSSMRLEPNVKAKLLMVGGSSYLPGLLSRLSSIPFVDECLVLPDARAAVAGGCALYSACLRNDSPMLLVDCAAHNLSISSKYCESIVCVPAGSPIPFTGVRTVNMTGSNASAVYSAALFEGDFVKCRLNKRIFFGDVVLGNVGVTGSATRTVPLTLEINVSS  11044

Range 2: 10495 to 10860 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 48/122(39%) 0/122(0%) Minus/Minus
Query       59  VVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITA  424
                + P NG+G PAG   +  Q +  +  L*AAQS +N      R  EY A P ATAAR S +    ST    +R  SRPG+*EDPP  +   LT     +   Y       IF VL T G+ T+
Subject  10495  LTPVNGIGEPAGTHTMDSQYLLLMLRL*AAQSTNNIGESFRRQAEYKAHPPATAARASGSTRHSSTNGIEERRDSRPGK*EDPPTISNLALTFGSNRILLQYFS*TSLTIFIVLSTNGAATS  10860

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 3

Range 1: 10571 to 11149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 79/193(41%) 0/193(0%) Plus/Plus
Query       30  DVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT  608
                DV VN S L  V  P++ RT++I+    + Y  +M     VK  L+++GGSSYLPGL+ +LS    +D  + +SD RAAVA GCALYS+CL     +LL+DCAAH +SI+  +C  I+C PAG+PIPF+GT  + ++ +N  +    A+FEG+Y+KC  N++I   ++   D+GV   +   I   L++++++
Subject  10571  DVLVNVSELAKVAAPFIERTVRIVREVYEKYLSSMRLSNEVKAKLLMVGGSSYLPGLKSLLSSTSFIDECIILSDARAAVAGGCALYSACLRNDSPMLLVDCAAHDLSISSKNCESIVCVPAGSPIPFTGTRTVNMSGSNAKAVYSAALFEGDYVKCRLNKRIFSGDVTLGDVGVTGTASRTIPLTLEINVSS  11149

Range 2: 10603 to 10965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 45/121(37%) 0/121(0%) Minus/Minus
Query       62  VVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSIT  424
                +VP  G+G PAG Q I  Q +  I    AAQS ++      R  EY A P ATAAR SE     S     +R   RPGR E+PP  +   LT     M   Y       I  VL   G+ T
Subject  10603  LVPVKGIGEPAGTQTIDSQFLLLILKSCAAQSTNSIGESLRRQAEYRAHPPATAARASERMMHSSMKDVDERRDFRPGRYEEPPTMSSLALTSLDRRMLLRYFSYTSLTILTVLSMNGAAT  10965

Range 3: 11011 to 11133 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 15/41(37%) 0/41(0%) Minus/Minus
Query      470  SR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTA  592
                SR K I    + +TP S       +I LF  H   SPS +A
Subject  11011  SRVKGIVLDAVPVTPTSPRVTSPEKILLFRRHLT*SPSKSA  11133

Carrot yellow leaf virus, complete genome

Sequence ID: Length: 16354 Number of Matches: 1

Range 1: 11087 to 11539 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 63/151(42%) 0/151(0%) Plus/Plus
Query      156  CDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT  608
                C L+ +GGSSYLPGL+ +LS    V R++++ D R++VA GCA+YS CL+    +LLIDCA+H +SI    C  I+  PAGAPIPFSG   + L  A+  S     +FEG+Y KCP N +I  S I+  D+G+ ++     +  +++ +++
Subject  11087  CVLITVGGSSYLPGLKGLLSAIPYVSRVIELPDARSSVAAGCAMYSLCLAKDSSMLLIDCASHHLSIPSYQCESIVLVPAGAPIPFSGRRTISLMNASATSSYNAILFEGDYSKCPMNERIYSSAIQLKDLGITAVRPVTRSITIELDVSS  11539

Nucleotide Sequence (1459 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 11 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
146
292
438
584
730
876
1022
1168
1314
1459

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
771.3 3734.5 35% 0 59% NC_004724
692.5 3108.3 23% 0 47% NC_007448
82.6 82.6 8% 9.855e-15 34% NC_027712
81.3 112.1 8% 1.448e-15 40% NC_001598
94.5 150.3 12% 9.168e-20 26% NC_022978

Alignments

Grapevine rootstock stem lesion associated virus, complete genome

Sequence ID: Length: 16527 Number of Matches: 10

Range 1: 14757 to 16145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
771.3 bits(1677) 0.0 357/463(77%) 0/463(0%) Plus/Plus
Query        2  MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ  1390
                ++LYA+AARTTSPKVQR DSD++F    GD+T+ VTEGDLKKVL+G APL RFTNKLRT GRTFTEAY+DFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*WK  LRI   *   AQ+KTQ+ *SS+LM +LI    *YA I A      *   +AKT**+I +V IT    R+R   IT+PQL+S +T I W*NSF*++ T  GFFS+ T +EERR  CAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*S LFVKKEIVKM+VIVSPYEAEDIL RST+MLRNIDSG LD +ECIK FST+TR++HCAKASYQWCVDTGL QRDCAEKRLIDT+ESNLR+A PL+REKVA H CKDEP+ELVAFITRKYVKLTGV  REAVKIEMR+LSKTVLNKLSLEMAFYMSP   K+ +
Subject  14757  LLLYALAARTTSPKVQRADSDIIFQNTYGDKTVVVTEGDLKKVLEGCAPLNRFTNKLRTFGRTFTEAYVDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WKFALRILRH*CYYAQIKTQHY*SSSLMMKLICRNC*YAGIYACRIAGM*LVVIAKT**RILKVHITPSSARERSGMITSPQLKSTITLIAW*NSF*KQETFFGFFSKVTSKEERRDTCAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SNLFVKKEIVKMRVIVSPYEAEDILTRSTEMLRNIDSGALDTRECIKAFSTLTRDLHCAKASYQWCVDTGLCQRDCAEKRLIDTVESNLRLAHPLIREKVATHFCKDEPKELVAFITRKYVKLTGVAAREAVKIEMRTLSKTVLNKLSLEMAFYMSPRAWKNAE  16145

Range 2: 14768 to 16123 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
708.5 bits(1540) 0.0 340/452(75%) 0/452(0%) Minus/Minus
Query       13  GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA  1368
                GDI*KAIS DSLF TVLDR RISIFTASR  TPVSLTYFRVMNAT+SLGSSLQ+* ATFSR RG*A L+FDS VSI+RFSAQSR +NPVSTHH Y+AFAQC SRV VEN L+HS +SN PLSMFRNISVDL RMSSAS*GDTIT ILTISFFTKR DYRLSFYQYLLQT+LHGTAMRSKEEIVSFEEGAQ++RRSS  V  EKKP++V+  *KEF+H + VI+L +CG VI+  R R +  VM T +I YYVFA  + H+    +A I AY*  R IN  IR DD*  CVL CA  +*   ILS +FHHITSLLPNWR+LLTGV TTPPSVF+AYILANIFLLCC+SESFG AP+KSAAR ESSAGIPNSAAALS*GILCL ATQKS YASV VRP VRSLLVNL+RGA+PSSTFLRSPSVT  VLSP  +    SES L*TLGDVVLAA A
Subject  14768  GDI*KAISKDSLFKTVLDRVRISIFTASRAATPVSLTYFRVMNATSSLGSSLQK*VATFSRMRG*ASLRFDSTVSIKRFSAQSRWHNPVSTHHWYDAFAQCKSRVSVENALMHSLVSNAPLSMFRNISVDLVRMSSAS*GDTITLILTISFFTKRFDYRLSFYQYLLQTILHGTAMRSKEEIVSFEEGAQVSRRSSFDVTLEKKPKNVSCF*KEFHHAISVIVLFNCGLVIIPDRSRADDGVMCTFKILYYVFAITTSHIPAMRHA*IPAY*QFRQINFIIRLDD**CCVLICA**H*CLRILSANFHHITSLLPNWRKLLTGVFTTPPSVFKAYILANIFLLCCNSESFGQAPKKSAARYESSAGIPNSAAALS*GILCL*ATQKSTYASVNVRPKVRSLLVNLLRGAHPSSTFLRSPSVTTTVLSP*VF*KIISESAL*TLGDVVLAARA  16123

Range 3: 14867 to 16123 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
640.3 bits(1391) 0.0 289/419(69%) 0/419(0%) Plus/Plus
Query      112  RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVT  1368
                R S E A*R+ TS *+H*Q +N+  H +  V *FLRG+QA DASAQR RR+GDT  RF+P  G    + ETL*   K KNV +YVR ED*   SKY R*   PI *E SYVMEIC QN E+LVLLRT QNT LLV+KSD +VNLPK+LICGYLRVS  GDVTGC RED++KDFEGAHHTVIRS T++YDYES  KEYN++ CVVKFFLETGDVFWFFL+SD +GRAARHLRTFFEANNFFFGSHCGTME+CLKQVLIETESVI+SFCEERNR*DEGDSISL*S*RHS ++N  VAKHRQW VGYE ++*S+ D N R ALRKS+V MVR*+ V+ T LR KT DR+  ++ + RS S  REGG+S L R*T R SGVH+A+I * + C  +GG K+R+A SI*DS K*T+ RNGLLYVT
Subject  14867  R*SQESA*RVRTS**IH*QAANFRPHVYGGVC*FLRGLQA*DASAQRGRRIGDTSRRFVPSCGLFRCLPETL*ITTK*KNVCKYVRFED*GRSSKYAR**FAPIR*ERSYVMEICAQNPEALVLLRTNQNTTLLVVKSDDEVNLPKLLICGYLRVSHRGDVTGCNREDVIKDFEGAHHTVIRSRTVRYDYESAVKEYNNADCVVKFFLETGDVFWFFLQSDIKGRAARHLRTFFEANNFFFGSHCGTMEYCLKQVLIETESVIESFCEERNR*DEGDSISL*S*RHSNKIN*NVAKHRQWSVGYERVH*SVLDANARFALRKSIVPMVR*HRVVPT*LRRKTLDRHR*IKSETRSPSHTREGGDSFLQR*TQRTSGVHHAEIR*AHRCGGAGGCKNRNAHSI*DSFK*TIFRNGLLYVT  16123

Range 4: 14761 to 14820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 12/20(60%) 0/20(0%) Plus/Plus
Query        6  CYMPSQRELHRLKFKGAILM  65
                C   SQRE HR KF+G IL+
Subject  14761  CSTLSQREPHRPKFRGLILI  14820

Range 5: 14766 to 16139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
556.4 bits(1208) 0.0 272/458(59%) 0/458(0%) Minus/Minus
Query       11  VFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRCDGI  1384
                VF    *HI+GHF*R FI* CLR*  H Y Y LP  HT + N+F R+ERH*   FIF KM RHLLA+ER+S+S I  +G+DQAFF A+ L  P +NAPL+R FCA+  S  RR+ FN    IQ +TVYVSQH  *   NVFSFIRRYYH HLNDFFLHKK RLQTQFLSVPASNN PWYRNAIQRRNC*LRRRCA+ APLFL C FGEKT++R   L+RI P N  + T *L  RN T   S+  +CD H +N LL LRD   S  R   R N RIL    +*  HQ * L +LCF+LC   L  ++SE +FPSHNF PT LA I NG  YY   SLQSVHT +HFS LL FREFR  + K+R  VRIF  YPQ CG VELRHL+LV HAEINIR  + A  SS+ VSE  KRC   KH L+I F + NS +  +V + +IRI+PLNF RC SRC+ +
Subject  14766  VFPRSR*HIEGHF*R*FI*NCLR*SAHFYFYSLPRRHTCELNVFPRDERH*FFGFIFAKMSRHLLAYERVSESQI*FNGVDQAFFGAITLAQPCVNAPLVRCFCAVQISR*RRERFNALSRIQRSTVYVSQHFS*SC*NVFSFIRRYYHPHLNDFFLHKKIRLQTQFLSVPASNNTPWYRNAIQRRNC*LRRRCASVAPLFL*CHFGEKTKKRLLFLKRISPRNQRYCTL*LRTRNHTGPFSSG*RCDVHLQNPLLRLRDYNQSHPRDATRVNTRILTISAD*LHHQT*RLVMLCFDLCVIALVPQDSERKFPSHNFSPT*LAQITNGRIYYSALSLQSVHTCKHFSTLL*FREFRAST*KVRS*VRIFCWYPQFCGRVELRHLMLVSHAEINIRLRKRAAESSQLVSESIKRCAPFKHFLEITFCHDNSLVTVSVLKDYIRISPLNFGRCGSRCESV  16139

Range 6: 14866 to 15513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 138/216(64%) 0/216(0%) Minus/Minus
Query      111  NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPL  758
                NQKTSPVS+KNFTTQ   LYSL  DS*SY  V+ER+TV* APSKSF  SSR  PVTSP  DTRKYPHI+  G+LT  SDL TS++VF* VR+STS S F* QISIT*L SY IG + *R YLL   QSS+RTY +TFF F  +QRVS    ++P  G NL  VSP LR R*AEAS AC PRRNQ+T  * C   F  C**  *EV+  QA S*D L
Subject  14866  NQKTSPVSKKNFTTQSALLYSLTADS*SYRTVLERMTV*CAPSKSFITSSRLQPVTSPRCDTRKYPHINNFGRLTSSSDLTTSNVVF*FVRNSTSASGF*AQISIT*LLSYLIGANY*RAYLLLRPQSSKRTYLQTFFYFVVIQRVSGKHLKSPQLGTNLLLVSPILRPR*AEASYACKPRRNQHTPP*TCGRKFAAC**IY*EVRTLQALS*DHL  15513

Range 7: 15589 to 16122 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.3 bits(529) 0.0 120/178(67%) 0/178(0%) Minus/Minus
Query      834  VTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP  1367
                VTY+RPFL  VYL LS*IE A L L+PP   H * * I A**TPL L VHL K++SPPSR  E ER  +  +  RS VF+R+ V  T  QRTI T LLR+A L L+S+ L*   SYPT HCLCFAT++L   ECLQLHKEILSPSS*RFLSSQK+SITDSVSISTCFKQ SMVPQCDP
Subject  15589  VTYRRPFLKIVYLKLS*IECAFLFLQPPAPPHL*A*RISA**TPLVLWVHLCKNESPPSRV*EGERVSDLIQRCRSSVFRRNHVGTTLCQRTIGTMLLRSANLALASRTL*CTLSYPTLHCLCFATFQLILLECLQLHKEILSPSS*RFLSSQKDSITDSVSISTCFKQYSMVPQCDP  16122

Range 8: 14773 to 14820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 11/16(69%) 0/16(0%) Minus/Minus
Query       18  HQNRPFEL*AM*FSLR  65
                +QN+P EL AM FSLR
Subject  14773  YQNQPSELWAMWFSLR  14820

Range 9: 15310 to 16146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.1 bits(749) 0.0 174/279(62%) 0/279(0%) Plus/Plus
Query      555  NMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPR*PNTPN  1391
                NMR+F R+  R  D + SRR +K F  C+SH +  +N  V LR+ S* V *  L G+IL R+  R LVFSPK   RKSGA+ AHLLRS*QFLLWIALRYHG LFEAGTDRN*VCNR FL*RKKSLR* **YLLMKLKTF + Q  CCET*TV  WI  + LK  RR* E C AQK R NGAL  G  N  A KNA*S P ++I*+SL LS ARRWR+IF KMN ++*WRS R N L+ +V   GR *+*+C LYLRQ+*IN  *KWP ICH     T N
Subject  15310  NMRVFTRVASRGCDWL*SRRRNKGF*RCTSHRHPLENGPV*LRVRS*RVQ*R*LRGEILFRNRRRFLVFSPK*HQRKSGATLAHLLRS*QFLLWIALRYHGVLFEAGTDRN*VCNRIFL*RKKSLR*G**YLLMKLKTF*QDQLKCCET*TVERWIRESALKRSRR*REICTAQKHRTNGALTQGCANVIAPKNA*STPLNQI*DSLTLSYARRWRLIFAKMNPKN*WRSSRGNTLSSQVWRRGRL*K*KCALYLRQF*INYL*KWPSICHLERGKTQN  16146

Range 10: 14920 to 15282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.5 bits(320) 0.0 71/121(59%) 0/121(0%) Plus/Plus
Query      165  TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI*  527
                T+ EL  A  ++R+LISAW TS RCLSST+PQ+WGY+ KI T  R F    RNSLN +K EKC +VCTL*RL+  **+ PL I AN VG KLCDGNL SE    S   H SKHN  S Q+*
Subject  14920  TSCELSAARLRRRMLISAWLTSIRCLSSTRPQNWGYQQKIRT*LRTF*VLARNSLNYNKVEKCLQVCTL*RLRAE**IRPLVICAN*VGEKLCDGNLRSES*GTSAITHKSKHNITSRQV*  15282

Grapevine leafroll-associated virus 2 isolate 93/955, complete genome

Sequence ID: Length: 16494 Number of Matches: 8

Range 1: 14732 to 16120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
692.5 bits(1505) 0.0 328/463(71%) 0/463(0%) Plus/Plus
Query        2  MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ  1390
                ++LYA+AARTTSPKVQR DSDV+FS   G+  + VTEGDLKKVLDG APLTRFTNKLRT GRTFTEAY+DFC+AYKHK+PQLNAAAELGIPAEDSYLAADFLG CPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*W+   +  NR  C A++     * S+LM  L  L Y*+A  C     E *R A  + * +I R +       + Y+   +  LR+    I  *+  *R V S GF SE  +  ER  ICAPSSKLTISSL RIAVPWSIV*SRY* KLSL*SILF KKEIVKM+VIVSPYEAEDIL +STD+LR+IDSGVL+ KECIKVFSTITR++HCAKASYQW VDTGLYQRDCAEKRLIDT+ESN+R+AQPLVR+KVA H CKDEP+ELVAFITRKYV+LTGV IR+ VK+EMRSL++ VLNKLSLEMAFY+SP   K+ +
Subject  14732  LLLYALAARTTSPKVQRADSDVIFSNRFGESNVVVTEGDLKKVLDGCAPLTRFTNKLRTFGRTFTEAYVDFCIAYKHKLPQLNAAAELGIPAEDSYLAADFLGTCPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WRITKKNLNRSCCYARI*ILCF*WSSLMLVLSCLNY*FAVTCECQDVER*RVATVRI*REILRAITIRLSALEPYNMTASLPLRNSTILIA**SFS*RLVVSFGFSSEVKLRVERCDICAPSSKLTISSLGRIAVPWSIV*SRY*LKLSL*SILFAKKEIVKMRVIVSPYEAEDILKKSTDILRDIDSGVLNTKECIKVFSTITRDLHCAKASYQWGVDTGLYQRDCAEKRLIDTVESNIRLAQPLVRQKVAAHFCKDEPKELVAFITRKYVELTGVGIRDVVKMEMRSLTRAVLNKLSLEMAFYVSPRAWKNAE  16120

Range 2: 14743 to 16098 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
601.8 bits(1307) 0.0 300/452(66%) 0/452(0%) Minus/Minus
Query       13  GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA  1368
                GD * AIS D+LF T L RERISIFT S + TPVS TYFRVMNAT+S GSSLQ+* ATF RTRG*A   FDS VSI+RFSAQSR*YNPVST H  EAFAQC SRVIVENTLIHS +  TPLSM RN+SVD  RMSSAS*GDTIT ILTISFF KRIDYRLSF  YLLQT+LHGTAMR KEEIVSFEEGAQM+ RS+ +  SE+KP+D T L*++ ++ + ++  L     ++LY  R +  ++  L+I   +   A+RH+S + ++Q++A *  R +N +IR D *++ +   A Q+ RF       H+ITSLLP+ RRLLTGV TTPPSVFRAY+LANIFLLCC+SESFG  PRKSAA+ ESSAGIPNSAAALS G LCLYA QKS  ASVKVRP V SLLVNLVRGA+PSSTFLRSPSVT  +LSP+  E  TSES  *TLGDVVLAA A
Subject  14743  GDT*NAISKDNLFKTALVRERISIFTTSLIPTPVSSTYFRVMNATSSFGSSLQK*AATFWRTRG*ANRMFDSTVSIKRFSAQSR*YNPVSTPHW*EAFAQCRSRVIVENTLIHSLVFKTPLSMSRNMSVDFFRMSSAS*GDTITLILTISFFAKRIDYRLSFS*YLLQTILHGTAMRPKEEIVSFEEGAQMSHRSTLSFTSEEKPKDTTSL*EKLHYAIRIVEFLKGRLAVILYGSRADNRMVIALKISR*ILTVATRHLSTS*HSQVTAN**FRQLNTSIRLDH*KHSIQIRA*QHERFRFFFVILHYITSLLPS*RRLLTGVFTTPPSVFRAYMLANIFLLCCNSESFGQVPRKSAAKYESSAGIPNSAAALSCGNLCLYAIQKST*ASVKVRPKVLSLLVNLVRGAHPSSTFLRSPSVTTTLLSPKRLEKITSESAR*TLGDVVLAASA  16098

Range 3: 14851 to 16104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
566.5 bits(1230) 0.0 261/418(62%) 0/418(0%) Plus/Plus
Query      121  *EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVTPA  1374
                *EGA R+ TS+*VH* T N  SHFH  + *FL  V AQ  + QR   +G++G*RF+    FSG + E L* AAKQK+VRE+VRS++*RW  KYT  QS    *+GSYVME   + SESLVLLRT  NT+LLV+KSD  V LPK+LICGYLRVS  G+VT C RED+ +DFEG HHTVIRS TIQYD ES  +E+N+S CVVKFFLETG VFWFFLRS+++GRA RHLRTFFEANNFFFGSHCGTME+CLKQVL ETES+IDSFCEERNR*DEG S+SL*S*RHS +++ ++ +HRQW   Y GMY S+ D+N R  L K  + +   +WV+S RLR*KT +RY RV+    STSRA EG  S L*R*T R SGVH+AK+  T+GC + G  KD +A S   S K* V  NG+L VTP+
Subject  14851  *EGARRVRTSH*VH**T*NLRSHFH*GLR*FLYRV*AQITATQRRSGIGNSG*RFILGCRFSGYLPEAL*IAAKQKDVREHVRSKN*RWSGKYTSEQSASAR*KGSYVMENYEEKSESLVLLRTNLNTMLLVVKSDASVELPKLLICGYLRVSGRGEVTCCNREDLTRDFEGNHHTVIRSRTIQYDSESAFEEFNNSDCVVKFFLETGSVFWFFLRSETKGRAVRHLRTFFEANNFFFGSHCGTMEYCLKQVLTETESIIDSFCEERNR*DEGYSVSL*S*RHSEKID*HITRHRQWGFKY*GMYQSVLDNNARPTLCKGFLPVGCGHWVVSARLR*KTFNRYGRVKHTVGSTSRAPEGSGSLL*R*TKRASGVHHAKVRGTHGCRNKGCGKDGNALSYQSSFK*IVFGNGVLRVTPS  16104

Range 4: 15464 to 16120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.2 bits(566) 0.0 133/219(61%) 0/219(0%) Minus/Minus
Query      734  LGVFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSL  1390
                L +F   G*H+K HF RQFI* C   R H +LY +P   TR+F++ SR+ERH*L  FIFTK+ R+LLAHERLS   + L  ID  FFSA+ALI PS++ PL+R  C M  S Y R++F+TFL I + TVYVS ++    QNVFSFIRR+Y+ HLNDFFL KKNRL TQF  VPASNN PWYRNA QRRNC*LRRRCAN APL+    FG KT+R + SL
Subject  15464  LSIFPRSG*HVKRHFQRQFI*NCSGKRAHFHLYHIPYSDTREFHVLSRDERH*LFWFIFTKVSRYLLAHERLSQPYV*LYRID*TFFSAIALIQPSVHTPLVRSLCTM*VSRYCREHFDTFLSI*NPTVYVS*YVSRFFQNVFSFIRRHYNPHLNDFFLRKKNRL*TQFQLVPASNNTPWYRNATQRRNC*LRRRCANVAPLYP*FHFGGKTKRHYQSL  16120

Range 5: 14850 to 15488 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.0 bits(511) 0.0 130/213(61%) 0/213(0%) Minus/Minus
Query      120  NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*  758
                NQKT PVSRKNFTTQ E L S   DS SYC+V+ERITV * PSKS   SSR   VTSP  DTRK P IS LG  TL SDL T SIVF  VRSSTSDS+F    SIT*LP Y    DC  VYL  HLQ  ERT SRT FCFAA+QR S   PEN     NLQP  P    R*    CA T  +NQ    *KCD  F V **T**EV+ R+APS*
Subject  14850  NQKTLPVSRKNFTTQSELLNSSKADSLSYCMVLERITVW*LPSKSLVKSSRLQHVTSPRPDTRK*PQISSLGSSTLASDLTTKSIVFKFVRSSTSDSDFSS*FSIT*LPFYLADADCSLVYLPLHLQFLERTCSRTSFCFAAIQRASGKYPENLQPSMNLQPEFPIPLRR*VAVICAYTRYKNQRKPQ*KCDRRF*VY**T**EVRTRRAPS*  15488

Range 6: 14898 to 16100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
364.9 bits(790) 0.0 207/401(52%) 0/401(0%) Plus/Plus
Query      168  NFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI*WQG*FT*DTNMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHP  1370
                N E  VALS +  LI   R ST   +ST  ++W +RLKI T  +IFW   R+SLNCSKAE+CSR CTL*+LKV  *+H  AI  + V GKLC+G L  +  IA  A H  ++   S Q+*   *  * TN+R+ A +   R D +     ++RF G S +     N T+  R+  *G+    L  ++  RD * LLVF PK  *  SGA+FAHLLRS*QFLLW+ALRYHG LFEAGT+ N*V NRFFL RKKSLR*  * LLMKLKTF + +    ET*TV   I RNV K  R+* E  I Q+   +G   LG I+A ALKN *SI  S+    LNLSCARR R+ FVKMN +S*WRS RE+  N RV   G  *R +C L   Q+*INC  KW F CHP
Subject  14898  NLEPSVALSLRLTLIFVSRISTNYRNSTPQRNWEFRLKIHTWLQIFWVLARSSLNCSKAERCSRACTL*KLKVEW*IHQ*AICVS*VEGKLCNGELRRKI*IARAATHEFEYYAFSGQV*C*C*AA*TTNLRLLASVRTWRGDVLQP*GFNERF*GQSPYGYPL*NHTI*QRVCL*GIQQF*LRSEVFPRDW*CLLVFPPK*N*G*SGATFAHLLRS*QFLLWVALRYHGVLFEAGTN*N*VYNRFFLRRKKSLR*GL*CLLMKLKTF*KNRLTYYET*TVGF*ILRNVSKCSRQ*RETYIVQRLLTSGVWTLGCISAIALKNV*SIR*SQTYGWLNLSCARR*RLTFVKMNQKS*WRSSRESTWNSRVSE*GMW*RWKCALLPEQF*INCLWKWRFTCHP  16100

Range 7: 15564 to 16100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.2 bits(448) 0.0 106/179(59%) 0/179(0%) Minus/Minus
Query      834  GVTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP  1370
                GVT K PF  T+YL L   E+A  SL  P + HP*V   FA**TPL L VHLYK +  PS AREVE  +  T  YR  VFQR+R D TQ       + L N  L L S+ L*YIP Y   HCLC    +    ECLQLHKE L PSS*RFLSSQKESI DSVS+STCFKQ SMVPQCDP
Subject  15564  GVTRKTPFPKTIYLKLLW*ESAFPSLPHPLFRHP*VPRTFA**TPLALLVHLYKSEPLPSGAREVEPTVCLTLPYRLNVFQRNRADTTQCPHPTGKKPLHNVGLALLSRTL*YIP*YLKPHCLCLVICQSIFSECLQLHKETL*PSS*RFLSSQKESIIDSVSVSTCFKQYSMVPQCDP  16100

Range 8: 14750 to 15364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 97/205(47%) 0/205(0%) Minus/Minus
Query       20  PRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRC  634
                P+NL L       S L     A+ R LV *     HQ * L       C A  AI+      P HNFP T L  IA+ C Y+ TFS  SVH REH SALLQFRE R  +QKI  +V IFSR  Q    VELR  VL+R  +IN+   ESAT  SKF+SEPS+RC  V+HLLK+   + +  + +TVR+ H+ I  LNFRR  SRC
Subject  14750  PQNLSLNPHGCNTSPLHVLTLASNRKLVV*AAQH*HQT*PLKA*YSNSCVAARAIQIFLRNSPLHNFPST*LTQIAHWCIYHSTFSF*SVHAREHLSALLQFRELRASTQKICSQV*IFSRNSQFRCGVELR*FVLIRDTKINVSLSESATEGSKFISEPSERCAPVEHLLKVTLRHYHVTLSKTVRKNHV*IGALNFRRRGSRC  15364

Tobacco virus 1 isolate AnHui, complete genome

Sequence ID: Length: 15395 Number of Matches: 1

Range 1: 13585 to 13944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 41/120(34%) 0/120(0%) Plus/Plus
Query       68  LFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLG  427
                L SY    +   V   D  ++L+    L+  TNK+R   R+F+  Y+  C  +  K+P+     +LGIP + SYL ADF+  C  LSE++Q+  +     ALK+   V +T  +NL +LG
Subject  13585  LTSYTLSGKKHVVNTRDFLELLNSLPQLSGKTNKIRVFCRSFSNQYLAVCREFGEKLPKQVRGTKLGIPTQYSYLQADFISDCAGLSEVEQAVLIKGKDIALKSAAVVGTTATTNLYELG  13944

Beet yellows virus, complete genome

Sequence ID: Length: 15480 Number of Matches: 2

Range 1: 13892 to 14188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 40/99(40%) 0/99(0%) Plus/Plus
Query       86  GDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTE  382
                G + + +T G+L   L     L    NKLR   RTF + YI     Y+ K+P +  A   G+PAED YLAADF+    +L++LQQSR + A   A  TE
Subject  13892  GGKELYLTHGELNSFLGSQKLLEGKPNKLRCFCRTFQKDYISLRKEYRGKLPPIARANRHGLPAEDHYLAADFISTSTELTDLQQSRLLLARENATHTE  14188

Range 2: 14668 to 14712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 9/15(60%) 0/15(0%) Plus/Plus
Query      823  NFFFGSHCGTMEHCL  867
                N F G+HCGT+ +CL
Subject  14668  NVFVGAHCGTLTYCL  14712

Carnation yellow fleck virus, complete genome

Sequence ID: Length: 15602 Number of Matches: 3

Range 1: 14003 to 14293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 45/97(46%) 0/97(0%) Plus/Plus
Query       92  RTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTE  382
                +T T+T G+L+  L+    L    NKLR   RTF + Y+DF   Y+  +  L  A   GIPAED YLAADFL   P+L+ELQQ R + A   A KTE
Subject  14003  KTYTLTYGELRNFLNSQPVLATKPNKLRFFCRTFQKEYLDFAKRYRSDLQPLARANRYGIPAEDHYLAADFLTTSPELTELQQGRLLLARENATKTE  14293

Range 2: 14746 to 14817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 9/24(38%) 0/24(0%) Plus/Plus
Query      808  FFEANNFFFGSHCGTMEHCLKQVL  879
                + +  + F G+HCGT+ +CL + L
Subject  14746  YLQFGSKFIGAHCGTLSYCLLREL  14817

Range 3: 15237 to 15377 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 12/47(26%) 0/47(0%) Plus/Plus
Query     1250  RKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ  1390
                R++ K+TG+    A+   MR +  TVL   S  + F ++  + ++++
Subject  15237  REFCKITGLTRENAMLENMRKVKSTVLFHHSDLLGFEITENMFRYSE  15377