Queries
Nucleotide Sequence (661 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
255.8 | 471.9 | 25% | 2.786e-67 | 39% | NC_028483 | |
250.8 | 405.5 | 27% | 9.166e-66 | 45% | NC_033465 | |
276.9 | 646.2 | 37% | 1.266e-73 | 33% | NC_020903 | |
249.0 | 392.2 | 40% | 3.265e-65 | 47% | NC_033468 | |
110.1 | 267.6 | 42% | 2.191e-45 | 40% | NC_032465 |
Alignments
Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77
Range 1: 3586 to 4230 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
255.8 bits(552) | 0.0 | 111/215(52%) | 0/215(0%) | Minus/Plus |
Query 15 CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALRHILPHQTHSI 659 C+DFEDFNSQHSV++M+AV+DAY D F H LT EQ A+ WT S+ + + +N YS KGT+LSGWRLTT MNSVLNY+YT ++ S+HNGDDVLLG ++ R A++ IRLQ SKCA+ IAEFLRVD RGS G YL+R++AT+VHSR+ESKP +++DL+EA+E+RL D RG + A +R + H+ I Subject 3586 CIDFEDFNSQHSVEAMQAVLDAYSDVFDHLLTVEQKYALRWTAQSIGKTSITNNIANCGTYSTKGTMLSGWRLTTMMNSVLNYVYTTHLLGRDRDDTPSVHNGDDVLLGVKNMRVAQEMNRRAQRVGIRLQPSKCAFAGIAEFLRVDRIRGSGGQYLTRSVATIVHSRVESKPKPNVKDLIEAMETRLADLHQRGASIRKIARIREVYYHKLAGI 4230
Range 2: 3885 to 4103 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 31/73(42%) | 0/73(0%) | Plus/Minus |
Query 142 GFDSILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPLC 360 G DS LECT VA L +Y P DP + ST +NSA+ AH C+ + A L + P+ TSSPLC Subject 3885 GLDSTLECTIVATDLVKYCPPDPLILSTLKNSAMPANAHFEGCNLIPTLCARLFISCATRMFFTPSRTSSPLC 4103
Range 3: 3591 to 3710 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 24/40(60%) | 0/40(0%) | Plus/Minus |
Query 535 VHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKS 654 VH A CS V +W N SL AS TA I T C LLKSSKS Subject 3591 VHLKAYFCSTVNRWSNTSL*ASKTACIASTECWLLKSSKS 3710
Range 4: 3765 to 3842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 15/26(58%) | 0/26(0%) | Plus/Minus |
Query 403 V*M*FRTLFMNVVSLQPDSKVPFALY 480 V* *F TLF+ VVS P + VPF Y Subject 3765 V*T*FNTLFIMVVSRHPLNIVPFVEY 3842
Range 5: 3967 to 4182 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 28/72(39%) | 0/72(0%) | Plus/Minus |
Query 63 PHRHPSRH*IIKPRLQCL*KIAHVAGWF*FYPGMYQCCHRPGQILPL*PPLMVDAQELCYSTVCTLAHL*PY 278 P+ PS + KPRL +I HV F +P +Y H QIL *P VD E + CTL L PY Subject 3967 PNACPSLVQVRKPRLHRFNQIFHVGFRFGLHP*VYYRRHGSCQILSA*PSDSVDP*EFRDARKCTLRRLQPY 4182
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 3414 to 4034 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.8 bits(541) | 0.0 | 107/207(52%) | 0/207(0%) | Minus/Plus |
Query 39 CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALRHI 659 CVDFEDFNSQHS +M+AV+ AY D + ++T EQ+ A WTR S+ V DN G K Y KGTL+SGWRLTTF+NSVLNY+YTQ ++ S+HNGDDVLLG + + V A K+N+RLQ +KCA+G +AEFLRVDH RG G YL+R +AT++HSRIESK + D+++A+E RL + + RG A LR + Subject 3414 CVDFEDFNSQHSNDAMEAVVQAYIDAYSQYMTPEQVQAAMWTRESISNTRVIDNMGTKTSYKTKGTLMSGWRLTTFINSVLNYVYTQALISGSHAMSRSVHNGDDVLLGIRNFKIVRDIVARADKYNVRLQRTKCAFGGLAEFLRVDHMRGDYGQYLTRNIATVMHSRIESKIAVSAVDVVQAMEDRLREYLQRGGVWDYAVQLREL 4034
Range 2: 3416 to 3661 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 46/82(56%) | 0/82(0%) | Plus/Minus |
Query 412 *FRTLFMNVVSLQPDSKVPFALYSILRPWLSCTITLSRDSRVHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKST 657 *FRT MNVV+L PD +VPF LY +L P LS T+ L DSRVH A +CS V S+YA TA I C LLKSSKST Subject 3416 *FRTELMNVVNLHPDMRVPFVLYDVLVPMLSITLVLEIDSRVHIAACTCSGVMYCE*ASMYA*TTASIASLECWLLKSSKST 3661
Range 3: 3716 to 3922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 31/69(45%) | 0/69(0%) | Plus/Minus |
Query 151 SILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPL 357 SIL C VAI L +Y+P PR+ ST RNSA P AH ++C+ L A T + +P++TSSPL Subject 3716 SILLCMTVAIFLVKYWP*SPRM*STLRNSAKPPKAHFVLCNLTLYLSALATISRTILKFRIPSSTSSPL 3922
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds
Range 1: 3469 to 4083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 120/205(59%) | 0/205(0%) | Minus/Plus |
Query 45 CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALR 659 C+DFEDFNSQHS +MKAVI AY +TF LT EQ A WT SLD+ I++DN G K Y +KGTLLSGWRLTTFMNSVLNYIYT + + + +SLHNGDDVL+G S+ +NA K+N+R+Q SKCA GAIAEFLR+DHK+G G YLSRA+AT+VHSRIES+ S+D+RDL++++E+R D+ RGM + + LR Subject 3469 CLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQIINDNVGTKTTYESKGTLLSGWRLTTFMNSVLNYIYTTKLAAEEKRPGDSLHNGDDVLIGVRSMALPQRCMQNAIKYNVRMQSSKCAVGAIAEFLRIDHKQGGNGQYLSRAVATMVHSRIESRVSTDIRDLVQSMENRFADAKGRGMANDIISGLR 4083
Range 2: 3468 to 3977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 95/170(56%) | 0/170(0%) | Plus/Minus |
Query 151 SILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPLCRLFCDCTTSGTIS*V*M*FRTLFMNVVSLQPDSKVPFALYSILRPWLSCTITLSRDSRVHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKSTQ 660 SILECT VA ALDRY+P P LWS RRNSAIAP AHLL+C R L +AF + +L P TSSPLC+L +S V*+*F TLFM VVSL P+S VP Y +L P LS I LS D+ VH A SCS V++ VS+ A ITAF+ LC*LLKSSKS Q Subject 3468 SILECTIVATALDRYWPLPPCLWSIRRNSAIAPTAHLLLCIRTLYLMAFCIHLCGRAIDLTPIKTSSPLCKLSPGRFSSAANFVV*I*FNTLFMKVVSLHPESSVPLDSYVVLVPTLSLIICLSNDAAVHIAACSCSGVRQSMKVSI*AYITAFMLPELC*LLKSSKSRQ 3977
Range 3: 3489 to 3788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 40/100(40%) | 0/100(0%) | Minus/Plus |
Query 340 QQSTQCEVNEGGNRRIQGHVWPFLNSGTAGSSRVDTTIS*QSDRTRQPRP*DGV*CEGDFTVRLEAHHVHEQCSKLHLYSTDSTRRSAVTKQPAQRRRCI 639 Q STQ +EG N R+ SGT S VD ++ Q+D Q D V* + T +EA HEQC +L+LY+ S+RR A AQRRRC+ Subject 3489 Q*STQLGQHEGCNIRLYRDFHRLSYSGTRASGNVDRSVIRQTDNQ*QRWNQDYV*I*RNATFGVEADDFHEQCVELYLYNEISSRRKASG**LAQRRRCL 3788
Range 4: 3882 to 4010 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 16/43(37%) | 0/43(0%) | Minus/Plus |
Query 118 CYSRVPARRP*AGVKGVVSVQGDGNIGTFQDRIKTIQRHARSS 246 C R+PA RP G + V +Q G+ GTF++ ++ H R S Subject 3882 CNCRIPADRPQTGRQRPVPIQSSGHNGTFEN*K*SLD*HKRLS 4010
Range 5: 3469 to 3573 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 14/35(40%) | 0/35(0%) | Plus/Minus |
Query 555 LFLS*EMAKRVPVCVYYRLH*LHTVLTVEIFKIYT 659 LF S + + + + VYY LH VLT+E+ K+ T Subject 3469 LFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKT 3573
Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 3449 to 4063 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 108/205(53%) | 0/205(0%) | Minus/Plus |
Query 45 CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSRGMPMWLAAALR 659 C+DFEDFNSQHS +SM AVI+AY + + ++EQ++A++WT S+ V DN G K EY KGTL+SGWRLTTF+NSVLNY+YT+ ++ + S+HNGDDVL+G +L RNA+K+N+RLQ K G+IAEFLRVDH RG G YL+R +ATLVHSRIES+ + + DL+EA+E R + +RG M L LR Subject 3449 CIDFEDFNSQHSNESMIAVIEAYLEVYQESFSKEQIMALQWTIQSIKETHVIDNMGTKTEYQTKGTLMSGWRLTTFVNSVLNYVYTRELIGESKTVTRSVHNGDDVLVGITNLAVARDVVRNARKYNVRLQTVKSNLGSIAEFLRVDHARGEYGQYLTRNIATLVHSRIESQKAVSLIDLIEAMEDRFGEFFTRGGSMDLITRLR 4063
Range 2: 3598 to 3960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 57/121(47%) | 0/121(0%) | Plus/Minus |
Query 148 DSILECTNVAIALDRYYPFDPRLWSTRRNSAIAPYAHLLICSRMLCFLAFLPARSTSSRELLPNNTSSPLCRLFCDCTTSGTIS*V*M*FRTLFMNVVSLQPDSKVPFALYSILRPWLSCT 510 DSILE T+VA+ L RY P+ P ST +NSAI P + SR L FLAFL ++R ++P TSSPL S S V *FRT F VV QPD +VPF YS+ P LS T Subject 3598 DSILEWTSVAMFLVRYCPYSPLA*STLKNSAIEPRLLFTVWSRTLYFLAFLTTSRATARLVMPTKTSSPLWTDLVTVFDSPISSLVYT*FRTEFTKVVRRQPDIRVPFVWYSVFVPILSIT 3960
Beihai blue swimmer crab virus 3 strain YYSZX17757 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 3791 to 4066 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 46/92(50%) | 0/92(0%) | Minus/Plus |
Query 384 CVDFEDFNSQHSVKSMKAVIDAYRDTFGHFLTQEQLVAVEWTRLSLDRVIVHDNQGLKMEYSAKGTLLSGWRLTTFMNSVLNYIYTQLIVPD 659 C+DFEDFNSQHS +M+AV++A+ D + LT +QL W S+ V G Y +GTL SGWRLTTFMN+V+NY YTQ +V D Subject 3791 CLDFEDFNSQHSSGNMRAVLEAFFDVYSQDLTDDQLKLRRWVLDSVLNQYVMPGSGNTHAYRTEGTLFSGWRLTTFMNTVMNYCYTQCLVED 4066
Range 2: 4055 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 43/107(40%) | 0/107(0%) | Minus/Plus |
Query 78 LIVPDVVQSQNSLHNGDDVLLGSNSLEDVLLAGRNAKKHNIRLQMSKCAYGAIAEFLRVDHKRGSKG*YLSRAMATLVHSRIESKPSSDMRDLLEALESRLDDSVSR 398 L+ +S +LH+GDDV + D + +A++ NIRL + KC +I EFLR DH+ + YL+R ++TLVH R ES SD+ +LL+A E+RL++ V+R Subject 4055 LVEDSGAKSYGTLHSGDDVFMSVMEPNDYIRMQFSAERWNIRLSLQKCFMTSIKEFLRKDHQHKAGAQYLARGVSTLVHGRTESVQHSDIIELLKANETRLEEIVNR 4375
Range 3: 3790 to 4065 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 44/92(48%) | 0/92(0%) | Plus/Minus |
Query 385 SGTIS*V*M*FRTLFMNVVSLQPDSKVPFALYSILRPWLSCTITLSRDSRVHSTATSCS*VKKWPNVSLYASITAFIDFTLC*LLKSSKSTQ 660 S T V* *F T+FMNVVSLQP++KVP LY+ + P T S S H S S VK S AS TA + LC LKSSKS Q Subject 3790 SSTKHWV*Q*FITVFMNVVSLQPENKVPSVLYACVLPDPGITY*FSTLSNTHRRNFS*SSVKS*EYTSKKASSTARMLPELCCELKSSKSKQ 4065
Nucleotide Sequence (518 letters)
Query ID: | ds2016-56_47 |
Query definition: | No definition line |
Query length: | 468 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds
Range 1: 1145 to 1657 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 51/171(30%) | 0/171(0%) | Plus/Plus |
Query 5 WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY 517 +MG++ + NYAS WR+AF+ +E +L RAA+ SV GKE+ T N + +++++ + V +V ++E GYP S + V VSG+L + HL + + E + P+DALR+A YR+FGHE+ + + + P +Y Subject 1145 FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY 1657
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 1078 to 1443 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 30/122(25%) | 0/122(0%) | Plus/Plus |
Query 2 MWMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSI 367 MW G+Y + N A + W+ F S+ + ++L +P+ RAA SV G+E + N + + + + + + ++ S + + A VSG L+ G + E++ +HL+G++++ Subject 1078 MWYGLYTLLHNEARTRNSWKTVFSSVADELKMLYTPMMRAACVSVITGREYASCMNHGAGMYIDMSSMYKQKYIGPLVPLDGTVGTSVEIEAIYAPVSGGLVLGTMTGEFETTAHLTGVRAL 1443
Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 1362 to 1499 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 17/46(37%) | 0/46(0%) | Plus/Plus |
Query 245 EGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGED 382 +G P + +T +PA VSG+L+ G + + + HL G+Q +P+ ED Subject 1362 DGSPATIPITTIPAPVSGSLVLGTLSGPFATVQHLKGLQKLPVHED 1499
Range 2: 1131 to 1343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 18/71(25%) | 0/71(0%) | Plus/Plus |
Query 11 GIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEV 223 G+Y ++N A+ WR+ + S + V+ + + RAA SV G E+ T ++ C+ ++ ++ +E+ Subject 1131 GLYTLLDNEAANRENWRDVYTSTIDDLGVIKTHLCRAACVSVVTGLEIGTTMHEGCFTYYDTSDMSFCEEL 1343
Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77
Range 1: 1502 to 1699 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 27/66(41%) | 0/66(0%) | Plus/Plus |
Query 287 YVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFT 484 YVSGAL AG + DG H+ Q+I I + + D RLA AYR FGHE+ + R F+ Subject 1502 YVSGALFAGACGLDVDGFEHIMPRQTIEIPKSGNLYRDDVFRLAAAYRYFGHELDISAVRDRTRFS 1699