Queries
Nucleotide Sequence (756 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
58.8 | 141.1 | 28% | 1.872e-20 | 25% | KT962973.1 | |
62.5 | 108.9 | 20% | 1.597e-14 | 28% | KP774593.1 | |
62.5 | 108.9 | 20% | 1.597e-14 | 28% | NC_027139.1 | |
53.3 | 97.9 | 16% | 2.732e-11 | 29% | NC_017991.1 | |
56.1 | 134.7 | 20% | 2.888e-16 | 34% | KT598233.1 |
Alignments
Sclerotinia sclerotiorum botybirnavirus 2 segment RNA 2, complete sequence
Sequence ID: KT962973.1 Length: 5872 Number of Matches: 3
Range 1: 1390 to 1656 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 32/89(36%) | 0/89(0%) | Plus/Plus |
Query 34 VPTSISYMCMITRNSITGNRLASENEQRADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEIT 300 V I Y TR + A+ ++F A F K K+ EF A IK GDNH+AFL A ++VL++KQA E A +I+ Subject 1390 VTRGIGYNIASTRAADLAKTAATRGASVPTAKEFTAYFDKLKQWPVEFEKARDIKATPGDNHIAFLVLAKSRVLALKQAAEQGAIAKIS 1656
Range 2: 1906 to 2112 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 17/69(25%) | 0/69(0%) | Plus/Plus |
Query 550 VPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSLLCT 756 +PYF I + +IP CN+ I + ++ L +G+ + Y+K + Q +A +L T Subject 1906 IPYFATIKSDATGYYKIPACNAIEEISLNTLGATEVTLTVGLAEYVLNEYIKRMGIETQYTVASQILLT 2112
Range 3: 1702 to 1866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 19/55(35%) | 0/55(0%) | Plus/Plus |
Query 337 EEDARASTSAQLAKQLASPWLKDQGRELHELILPSAAANAEEILMLLYLMGAMDN 501 + + R +TS+ + L + G ++ILPS AA AEE+++L YL G D+ Subject 1702 KSNPRGTTSSGIMDGLIRMMVNIVGGSGSDIILPSEAATAEELIVLGYLCGFFDD 1866
Sclerotinia sclerotiorum botybirnavirus 1 segment 2, complete sequence
Sequence ID: KP774593.1 Length: 5965 Number of Matches: 2
Range 1: 1183 to 1416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 31/78(40%) | 0/78(0%) | Plus/Plus |
Query 112 QRADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEITIDRDIYNNLIVLEED 345 QR D R+F+A F + K EF G+ K GDNHVA+LT A+ ++L++KQA E + I + I N + ED Subject 1183 QRVDSREFQARFDEMKGFPIEFRLGGTAKSVDGDNHVAWLTIAILRLLALKQAQETNSRGHIEMTSGIANQFGINLED 1416
Range 2: 1639 to 1854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 20/72(28%) | 0/72(0%) | Plus/Plus |
Query 532 DHPMTIVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSL 747 D + I P + I + + ++IP N+ I M +ELG + F SYV+ L +Q+N+A+ + Subject 1639 DEELGIQPMYSAIRSSATERMKIPFVNASRAISMNDLKKFNADIELGRAEAVFNSYVRRHELQSQVNVARRI 1854
Sclerotinia sclerotiorum botybirnavirus 1 segment 2, complete sequence
Sequence ID: NC_027139.1 Length: 5965 Number of Matches: 2
Range 1: 1183 to 1416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 31/78(40%) | 0/78(0%) | Plus/Plus |
Query 112 QRADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEITIDRDIYNNLIVLEED 345 QR D R+F+A F + K EF G+ K GDNHVA+LT A+ ++L++KQA E + I + I N + ED Subject 1183 QRVDSREFQARFDEMKGFPIEFRLGGTAKSVDGDNHVAWLTIAILRLLALKQAQETNSRGHIEMTSGIANQFGINLED 1416
Range 2: 1639 to 1854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 20/72(28%) | 0/72(0%) | Plus/Plus |
Query 532 DHPMTIVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSL 747 D + I P + I + + ++IP N+ I M +ELG + F SYV+ L +Q+N+A+ + Subject 1639 DEELGIQPMYSAIRSSATERMKIPFVNASRAISMNDLKKFNADIELGRAEAVFNSYVRRHELQSQVNVARRI 1854
Botrytis porri RNA virus 1 RNA 2, complete genome
Sequence ID: NC_017991.1 Length: 5879 Number of Matches: 2
Range 1: 1539 to 1679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 19/47(40%) | 0/47(0%) | Plus/Plus |
Query 157 KRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCEI 297 K++ E+Y AG++K Q GDNH+ L Q L + S++QA+E + C + Subject 1539 KKVPSEWYKAGNVKAQFGDNHIGMLVQWLIMLWSVRQAEEQGSTCHV 1679
Range 2: 1923 to 2138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 21/72(29%) | 0/72(0%) | Plus/Plus |
Query 541 MTIVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSLLCT 756 ++IVP + T + + LRIPLCNS + + + + G L+ YV+ L +QL+ A+ + C+ Subject 1923 LSIVPTYYTYQTDIREYLRIPLCNSLKALSLVDLSENEYLMTSGGLECIIIDYVRRMGLQDQLHNAQLIACS 2138
Soybean leaf associated botybirnavirus 1 isolate SaBRV1 1 segment RNA1, partial sequence
Sequence ID: KT598233.1 Length: 3667 Number of Matches: 3
Range 1: 848 to 1027 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 24/60(40%) | 0/60(0%) | Plus/Plus |
Query 115 RADRRDFEAGFVKDKRLAQEFYNAGSIKGQQGDNHVAFLTQALAKVLSIKQADEAQAFCE 294 R D R+F++ F + K L EF AG+ K G+NHVA L A+ + +KQA E C+ Subject 848 RPDEREFQSRFDEMKNLPSEFRLAGNAKSVSGENHVAMLVMAMRGIFMLKQAQEQGVRCK 1027
Range 2: 1316 to 1519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 23/68(34%) | 0/68(0%) | Plus/Plus |
Query 547 IVPYFGGIATKVDKLLRIPLCNSQHMIDMTPYIGKKIRLELGVLQETFTSYVKGFNLHNQLNIAKSLL 750 +VP+F I T L+RIPL NS I + G LE+G + Y+ +L Q+ +A+ LL Subject 1316 MVPFFAHIKTGATSLMRIPLSNSLRPIPPSTINGWSGYLEVGRAEAVLNHYIVRMDLQKQVPVARELL 1519
Nucleotide Sequence (345 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
68.0 | 68.0 | 32% | 5.349e-10 | 34% | KT962972.1 | |
60.6 | 60.6 | 24% | 8.615e-08 | 34% | NC_017990.1 | |
60.6 | 60.6 | 24% | 8.615e-08 | 34% | JF716350.1 | |
47.3 | 47.3 | 21% | 0.0008617 | 28% | HE579577.1 | |
58.8 | 58.8 | 20% | 3.069e-07 | 36% | HE579658.1 |
Alignments
Sclerotinia sclerotiorum botybirnavirus 2 segment RNA 1, complete sequence
Sequence ID: KT962972.1 Length: 6159 Number of Matches: 1
Range 1: 2195 to 2530 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 38/112(34%) | 0/112(0%) | Plus/Plus |
Query 3 EQMMPIVATSWMLNLMSLDVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLTANYNERPLRFSSYLYLEDQP 338 E M ++A S +L+ + + L E++ E G + S +F A LGD LP GLSH T+PV KL+ D+ I + L +N R R SSY+ L++QP Subject 2195 ESYMALIAASTILSRSAEEALLEAIIFTAESAGYSPFSFSFKAVIDQFLGDSLPWGLSHATIPVFSKLMDLDLNDLVLCIDRHMVGCISKLLLGFNNRLFRASSYMMLKEQP 2530
Botrytis porri RNA virus 1 RNA 1, complete genome
Sequence ID: NC_017990.1 Length: 6215 Number of Matches: 1
Range 1: 2483 to 2731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 28/83(34%) | 0/83(0%) | Plus/Plus |
Query 48 MSLDVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLTANYNER 296 M+ +VL +S+ + E G+ ++ + LG L G +HL MP+VEKLLG+ FP++ QY+ L L T +R Subject 2483 MAEEVLTDSIVSTVVEAGIEYTNPAYTGTVEQELGRHLYHGYAHLIMPIVEKLLGDTFPELTQYLADSVLALEHCTTGRDLDR 2731
Botrytis porri RNA virus 1 strain GarlicBc 72 segment 1, complete sequence
Sequence ID: JF716350.1 Length: 6215 Number of Matches: 1
Range 1: 2483 to 2731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 28/83(34%) | 0/83(0%) | Plus/Plus |
Query 48 MSLDVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLTANYNER 296 M+ +VL +S+ + E G+ ++ + LG L G +HL MP+VEKLLG+ FP++ QY+ L L T +R Subject 2483 MAEEVLTDSIVSTVVEAGIEYTNPAYTGTVEQELGRHLYHGYAHLIMPIVEKLLGDTFPELTQYLADSVLALEHCTTGRDLDR 2731
Uncultured totivirus genomic RNA containing putative RdRp, contig 406.2Pv1_454_1
Sequence ID: HE579577.1 Length: 3628 Number of Matches: 1
Range 1: 653 to 874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 21/74(28%) | 0/74(0%) | Plus/Plus |
Query 57 DVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLELAQHLT 278 +VL +S+ + G+ + + A LG L G +H+ PV+E+LL ++FP++ Q++ L L + T Subject 653 EVLTDSIVSATTAAGIPYTHPAYKATVEQELGRHLYNGYAHMIQPVIEQLLQDQFPELTQFLSDSVLALEKCTT 874
Uncultured totivirus genomic RNA containing putative RdRp, contig 95.1Hv1_454_1
Sequence ID: HE579658.1 Length: 2684 Number of Matches: 1
Range 1: 165 to 371 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 25/69(36%) | 0/69(0%) | Plus/Plus |
Query 57 DVLCESVFTCFEENGVALSSQNFVAQAALRLGDVLPEGLSHLTMPVVEKLLGEKFPDVNQYIPHGPLEL 263 +VL + + + G+ ++ F A LG L +G +H+ PVVEKLLGEKFP++ Q++ L L Subject 165 EVLTDGIISAATAAGITYTNPAFKATIEQELGRHLSQGYAHMIQPVVEKLLGEKFPELTQFLSDSVLAL 371
Nucleotide Sequence (637 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
84.5 | 84.5 | 18% | 1.49e-14 | 33% | KT962973.1 | |
72.5 | 72.5 | 15% | 5.748e-11 | 32% | NC_017991.1 | |
72.5 | 72.5 | 15% | 5.748e-11 | 32% | JF716351.1 |
Alignments
Sclerotinia sclerotiorum botybirnavirus 2 segment RNA 2, complete sequence
Sequence ID: KT962973.1 Length: 5872 Number of Matches: 1
Range 1: 3472 to 3810 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 37/113(33%) | 0/113(0%) | Minus/Plus |
Query 246 IHESFDEIDVPGDGRCGIRALHQGMVLKNQTKSLSELMQMEATMFGGVSNRLPRDTHVDDGAMALMADKLGYHLIVLEQESIDSTSLNTVRYHKNDDKAEREVLFVKIIGNHW 584 + E F+E DVPGDGRCG+ ALH+ + L EL +MEA + + P+ V D +A++ADKL Y + + +E + + +++ N+D R+V+ + HW Subject 3472 LEEDFEETDVPGDGRCGMSALHKSLELMGIPIGKKELFEMEAEILQLKGKKAPKTLWVSDVTIAMVADKLDYDTVFVFREGGNGDTYTSLKTFTNEDAPPRQVVPIAGEVGHW 3810
Botrytis porri RNA virus 1 RNA 2, complete genome
Sequence ID: NC_017991.1 Length: 5879 Number of Matches: 1
Range 1: 3492 to 3770 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 30/93(32%) | 0/93(0%) | Minus/Plus |
Query 312 RAIHESFDEIDVPGDGRCGIRALHQGMVLKNQTKSLSELMQMEATMFGGVSNRLPRDTHVDDGAMALMADKLGYHLIVLEQESIDSTSLNTVR 590 R +++ + GDGRCG+RALH MV K SL+E+ ++EA + G R+ + D +AL+A + GY L++ ++ + + +++ VR Subject 3492 RGLYDHIKVVPTIGDGRCGVRALHAQMVAKGDMISLTEVYEVEAQVCGLEERRVAKQIWATDEVLALVARQYGYSLVMYQESNDEDPTIDKVR 3770
Botrytis porri RNA virus 1 strain GarlicBc 72 segment 2, complete sequence
Sequence ID: JF716351.1 Length: 5879 Number of Matches: 1
Range 1: 3492 to 3770 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 30/93(32%) | 0/93(0%) | Minus/Plus |
Query 312 RAIHESFDEIDVPGDGRCGIRALHQGMVLKNQTKSLSELMQMEATMFGGVSNRLPRDTHVDDGAMALMADKLGYHLIVLEQESIDSTSLNTVR 590 R +++ + GDGRCG+RALH MV K SL+E+ ++EA + G R+ + D +AL+A + GY L++ ++ + + +++ VR Subject 3492 RGLYDHIKVVPTIGDGRCGVRALHAQMVAKGDMISLTEVYEVEAQVCGLEERRVAKQIWATDEVLALVARQYGYSLVMYQESNDEDPTIDKVR 3770