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Queries

Nucleotide Sequence (473 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
48
96
144
192
240
288
336
384
432
473

Descriptions

Alignments

Fusarium graminearum dsRNA mycovirus-4 dsRNA1, complete genome

Sequence ID: Length: 2383 Number of Matches: 5

Range 1: 1890 to 2297 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 81/136(60%) 0/136(0%) Plus/Plus
Query        2  QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMYTIA*  409
                QYLGKF R H +   G    V +PYRP EET   +YYPER   G  RTY RALGNLLDNYGNP  A WLN LLDWLE +++LLP +W  DTVQDAARDYTS+LV VP+P RW+FEEW+ L L+  +   + Y  A*
Subject   1890  QYLGKFLRGHKLDLDGRKITVALPYRPCEETFVHMYYPERKSEGVERTYQRALGNLLDNYGNPMMADWLNKLLDWLEPQMELLPTDWLEDTVQDAARDYTSDLVRVPRPLRWTFEEWVHLCLSSDDSDPEWYMYA*  2297

Range 2: 2060 to 2293 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 40/78(51%) 0/78(0%) Minus/Minus
Query      172  AMVYISVISSFGVRVSASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP*LS  405
                A +Y S   S   +   +HSSN  R G GT T SLV*S AASCTVS   S G+ S   S+QS S FS  A  G P*LS
Subject   2060  AYIYHSGSESSDDKHKCTHSSNVQRNGRGTRTRSLV*SRAASCTVSSSQSVGNSSICGSSQSSSLFSQSAIIGFP*LS  2293

Range 3: 1892 to 2008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 18/39(46%) 0/39(0%) Minus/Minus
Query        4  RSG*YRRATVSSMGR*GITTSNASPPAPTVWRRKNLPKY  120
                RSG*Y    VSS GR G  T    P   ++  R+NLP+Y
Subject   1892  RSG*YICTKVSSHGRYGKATVIFRPSRSSL*PRRNLPRY  2008

Range 4: 2058 to 2240 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 22/61(36%) 0/61(0%) Minus/Minus
Query      170  PFLKRPSFGLRNNYQLTGIVSGCVLHRVRCPFHW**VQSGLQPVKKSIQPLSSMRITVVIQ  352
                P LK P+   R+ +Q+TG+V   +L+R+  P    *+   LQPV++ IQP+    I+V+++
Subject   2058  PLLKCPAQWARHTHQVTGVVPRRILYRILQPIGGQ*LHLWLQPVQQLIQPVRHHWISVIVE  2240

Range 5: 2047 to 2241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 24/65(37%) 0/65(0%) Plus/Plus
Query      159  WEISWITTVIRMLLSG*MDFLTGWSPDWTYYQWNGHLTRCRTQPETIPVSW*LFRSPNDGRLRNG  353
                W I    T I+   +G*+   TGWS  W+Y    G   R R +  T PV+W + R+   G LR+G
Subject   2047  WAIYSTITEIQ*WRTG*ISCWTGWSHRWSYCPPIGWRIRYRMRRGTTPVTWCVCRAHCAGHLRSG  2241

Cryphonectria parasitica bipartite mycovirus 1 strain 09269 segment RNA1, complete sequence

Sequence ID: Length: 2026 Number of Matches: 1

Range 1: 1484 to 1888 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 51/135(38%) 0/135(0%) Plus/Plus
Query        2  QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMYTIA  406
                Q+LGK+F       G  A    IPYRP  ET  RL YPE       +TYLRALGN LD  GN     WL   ++WL+ +L   P EW  +  +  +RDY++  V VP+P++  F++W  L +  +E    ++  A
Subject   1484  QFLGKYFYLGDYPVGDGAMQQPIPYRPASETYLRLLYPEYGDLPTPQTYLRALGNYLDAAGNRAMEAWLTAFIEWLQPQLSYEPNEWPDNFKRMVSRDYSNVGVEVPRPRQIDFQQWRDLVVLGREAYRRLWRTA  1888

Curvularia thermal tolerance virus RNA1, complete sequence

Sequence ID: Length: 2149 Number of Matches: 1

Range 1: 1557 to 1952 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 54/132(41%) 0/132(0%) Plus/Plus
Query        2  QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMY  397
                QYLGK+FRR           V IPYRP +ET  RL YPE     A +T+LR LGN LD  GNP   KWL G +DWLE ++   P  W S+  +  +RDY+   + +P+P+R  +E+W  L + P+++   ++
Subject   1557  QYLGKYFRREEYPLDEGTVVVAIPYRPFKETYLRLLYPEYGSLEADQTWLRLLGNYLDAAGNPVTEKWLQGFMDWLEPQVVAPPQVWPSNFQRMVSRDYSGIGIEMPRPERMCYEQWRDLVVLPRDDYRQLW  1952

Sclerotium hydrophilum virus 1 isolate ShR#20 putative RNA-dependent RNA polymerase gene, complete cds

Sequence ID: Length: 2121 Number of Matches: 2

Range 1: 1578 to 1703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 23/42(55%) 0/42(0%) Plus/Plus
Query        2  QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVG  127
                Q+LGK+F    V    +A   VIPYRPI ET+ RL YPER G
Subject   1578  QFLGKYFCLREVEGDEEAIQAVIPYRPITETLDRLAYPERPG  1703

Range 2: 1743 to 1997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 26/85(31%) 0/85(0%) Plus/Plus
Query      143  TYLRALGNLLDNYGNPHAAKWLNGXXXXXXXXXXXXPVEWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEEITDMY  397
                +Y+RA+GN +D  GN     +L G L WLE +     + W  D +Q     Y          +R+++EEWL L L  K+ +  ++
Subject   1743  SYMRAVGNYMDGAGNKLTRVFLEGYLTWLEGKGHHEGIRWREDDLQKMTGIYDGVAETFLPARRYTYEEWLDLVLVEKKVVQRVF  1997

Penicillium aurantiogriseum bipartite virus 1 segment RNA 1 putative RdRp gene, complete cds

Sequence ID: Length: 2110 Number of Matches: 4

Range 1: 1518 to 1730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 35/71(49%) 0/71(0%) Plus/Plus
Query        2  QYLGKFFRRHTVGAGGDAFDVVIPYRPIEETVARLYYPERVGGGATRTYLRALGNLLDNYGNPHAAKWLNG  214
                QYLGK+FRR           VVIPYRP  ET  RL YPE       +T+LR LGN +D  GNP   +WL G
Subject   1518  QYLGKYFRREEYPTEDGPVGVVIPYRPFGETFLRLLYPEYGTLDVEQTWLRVLGNYIDAAGNPVTERWLQG  1730

Range 2: 1773 to 1898 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 17/42(40%) 0/42(0%) Plus/Plus
Query      257  EWTSDTVQDAARDYTSELVVVPKPKRWSFEEWLALTLTPKEE  382
                +W S+ ++  +RDYT   V VP+P+R S+E+W  L + P+ E
Subject   1773  QWPSNFLRMVSRDYTGVGVEVPRPERMSYEQWRDLVVLPRSE  1898

Range 3: 1697 to 1897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 26/67(39%) 0/67(0%) Minus/Minus
Query      181  SSFGVRVSASHSSNDHRLGFGTTTNSLV*SLAASCTVSDVHSTGSKSNRDSNQSRSPFSHLAACGLP  381
                S  G    + H S D R G GT+T + V*S        + H     S   SNQS SP+SH +  GLP
Subject   1697  SDLGRTTRSRHCSYDIRSGRGTSTPTPV*SRDTIRRKLEGHWANVASTCGSNQSSSPWSHRSVTGLP  1897

Range 4: 1520 to 1633 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 16/38(42%) 0/38(0%) Minus/Minus
Query        4  SG*YRRATVSSMGR*GITTSNASPPAPTVWRRKNLPKY  117
                SG  +R  VS  G *GITT           R K LP+Y
Subject   1520  SGYNKRKNVSPNGL*GITTPTGPSSVGYSSRLKYLPRY  1633

Nucleotide Sequence (347 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 2 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
347

Descriptions

Alignments

Fusarium graminearum dsRNA mycovirus-4 dsRNA1, complete genome

Sequence ID: Length: 2383 Number of Matches: 3

Range 1: 1197 to 1541 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 70/115(61%) 0/115(0%) Minus/Plus
Query        2  PKGXXXXXXXXXXXXXLGNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD  346
                PKGRLIL+LSQRDLLL G  E  LT+AY    YPVS+GMGW+ GNV +F ER    +KFFC DA K+D+SLD +++RD V+++R QF  G D KYD YWEFV++SL+ API RDD
Subject   1197  PKGRLILMLSQRDLLLCGVTEQLLTSAYCADDYPVSLGMGWFKGNVRKFSERYAGFKKFFCFDAAKFDSSLDDYMIRDVVNLLRQQFENGMDDKYDAYWEFVIQSLIYAPIQRDD  1541

Range 2: 1247 to 1540 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.0 bits(163) 0.0 45/98(46%) 0/98(0%) Plus/Minus
Query        3  SSRAIGAESKDSTTNSQYISYFGSSPPTNWVLTIDTASLTNHGSREASYFSASMQKNFSNGINRSINSVTFPPYHPMPTDTG*REGLYAVVNGVSTLP  296
                SSR +GA  +D  TNSQY SY  S P +N      T S     SR  S  +AS QKNF N   RS+N  T P  HPMP+DTG*     A V+  S  P
Subject   1247  SSR*MGA*IRDWITNSQYASYLSSMPFSNCCRRRFTTSRIM*SSRLLSNLAASKQKNFLNPA*RSLNLRTLPLNHPMPSDTG*SSAQ*ADVSSCSVTP  1540

Range 3: 1278 to 1511 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 27/78(35%) 0/78(0%) Plus/Minus
Query       32  RLHNEFPVHIVFRVVAPNKLGPYNRHGIPH*PWIQGGVIFLSIHAEELL*RN*PFNKLRHIPSIPPHADGHGIAGGFV  265
                RL N+FP+ ++F + A  KL     H + +   I+  +    + AEE L  +  F +L HI   PPHA  H I  G V
Subject   1278  RLDNKFPICVIFVIHAVLKLLSKEIHDVSNHVIIKTTIKLGGVEAEEFLEPSIAFTELAHIAFEPPHAQRHRIIVGAV  1511

Penicillium aurantiogriseum bipartite virus 1 segment RNA 1 putative RdRp gene, complete cds

Sequence ID: Length: 2110 Number of Matches: 2

Range 1: 900 to 1193 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 49/98(50%) 0/98(0%) Minus/Plus
Query        2  GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD  295
                G  E  LT+AY  +++P+SVG  W+      F +R      ++C+DA+KYDA LDPWL++ A++I+R QFV G +P YD YW FV ESL+SAPI RDD
Subject    900  GITEKLLTSAYLDAKWPISVGDSWFHEGTHGFYKRFRNYTNYYCLDAKKYDAFLDPWLIKIAINIIREQFVDGREPAYDAYWRFVEESLISAPICRDD  1193

Range 2: 1028 to 1192 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.0 bits(132) 0.0 32/55(58%) 0/55(0%) Plus/Minus
Query        3  SSRAIGAESKDSTTNSQYISYFGSSPPTNWVLTIDTASLTNHGSREASYFSASMQ  167
                SSR IGA  +DS+T  Q  SY GS P TN  L I  A L +HGSR+ASYF AS Q
Subject   1028  SSRQIGALMRDSSTKRQ*ASYAGSLPSTNCSLMILMAILMSHGSRKASYFLASRQ  1192

Cryphonectria parasitica bipartite mycovirus 1 strain 09269 segment RNA1, complete sequence

Sequence ID: Length: 2026 Number of Matches: 1

Range 1: 866 to 1159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 48/98(49%) 0/98(0%) Minus/Plus
Query        2  GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD  295
                G  E PLT ++    +P++VG  WY G V EF++R +P E+F+C DA K+D+ ++PW+V  AV I R QF  G + +Y+ YW FV ESLL+API RDD
Subject    866  GATEAPLTQSWSAPCFPIAVGQSWYHGGVKEFVDRFVPHERFYCFDARKFDSFINPWMVDLAVRICRLQFHDGLNQRYNAYWNFVRESLLAAPIYRDD  1159

Rhizoctonia fumigata mycovirus isolate C-314 putative RNA-dependent RNA polymerase gene, complete cds

Sequence ID: Length: 2311 Number of Matches: 3

Range 1: 1129 to 1422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.7 bits(257) 0.0 46/98(47%) 0/98(0%) Minus/Plus
Query        2  GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARDD  295
                G  E PL  A+KP  +P+SVG GW+ G+ T F+ +     + +C DAEK+D+S+ PWL+  AV+I+R QF+ G     DMYW+FV ESLL + + RDD
Subject   1129  GLSEQPLNDAWKPDNFPISVGRGWFHGDATRFVRKHAGASRIYCFDAEKFDSSIMPWLIHIAVTIMREQFMEGLRHDADMYWQFVEESLLHSMVFRDD  1422

Range 2: 1257 to 1397 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.1 bits(95) 0.0 24/47(51%) 0/47(0%) Plus/Minus
Query       27  SKDSTTNSQYISYFGSSPPTNWVLTIDTASLTNHGSREASYFSASMQ  167
                S DS+TN QY+S    SP  N  L + TA   NHG  E S FSAS Q
Subject   1257  SNDSSTNCQYMSASCRSPSMNCSLIMVTAM*INHGMMEESNFSASKQ  1397

Range 3: 1125 to 1223 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.4 bits(56) 0.0 13/33(39%) 0/33(0%) Plus/Minus
Query      201  NSVTFPPYHPMPTDTG*REGLYAVVNGVSTLPK  299
                N V  P  HP PT+ G   G  A   G S  P+
Subject   1125  NRVASPWNHPRPTEMGKLSGFQASFRGCSESPR  1223

Curvularia thermal tolerance virus RNA1, complete sequence

Sequence ID: Length: 2149 Number of Matches: 2

Range 1: 938 to 1228 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 48/97(49%) 0/97(0%) Minus/Plus
Query        5  GNVETPLTTAYKPSRYPVSVGMGWYGGNVTEFIERLIPLEKFFCMDAEKYDASLDPWLVRDAVSIVRTQFVGGDDPKYDMYWEFVVESLLSAPIARD  295
                G  E  LT+A+   +YP+SVG+ WY      F++R +   +F+C+DA KYDA LDPWL++ A++I R QFV G D +YD YW+FV ESL+ API R+
Subject    938  GTTEKLLTSAWLAEQYPISVGLSWYHEGTQAFVKRFLNFTEFYCLDARKYDAFLDPWLIQIAINICREQFVDGRDERYDAYWDFVRESLVEAPICRE  1228

Range 2: 937 to 1227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(149) 0.0 41/97(42%) 0/97(0%) Plus/Minus
Query        6  SRAIGAESKDSTTNSQYISYFGSSPPTNWVLTIDTASLTNHGSREASYFSASMQKNFSNGINRSINSVTFPPYHPMPTDTG*REGLYAVVNGVSTLP  296
                S  IGA ++DS T SQY S   S P TN  L +  A   NHGSR+ASYF AS Q N      R  N+     YH  PT+ G     +A V+  S +P
Subject    937  SLQIGASTRDSRTKSQYAS*RSSRPSTNCSLQMLMAI*INHGSRKASYFRASKQ*NSVKLRKRLTNACVPS*YHDNPTEMGYCSASHADVSSFSVVP  1227