This html page seems to have been stripped by Galaxy.
Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.

Queries

Nucleotide Sequence (373 letters)

Query ID:ds2016-133_14
Query definition:No definition line
Query length:603
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 7 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
373

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
39.6 270.6 29% 0.0001524 46% CP000472.1
39.6 270.6 29% 0.0001524 46% NC_011566.1
36.8 397.7 37% 0.0003965 39% CP000262.1
36.8 397.7 37% 0.0003965 39% NC_008024.1
62.5 280.3 11% 2.781e-08 80% HQ442266.1

Alignments

Shewanella piezotolerans WP3, complete genome

Sequence ID: CP000472.1 Length: 5396476 Number of Matches: 8

Range 1: 2115840 to 2116001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Minus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject2115840  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  2116001

Range 2: 4150564 to 4150725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Plus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject4150564  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  4150725

Range 3: 74936 to 75097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Minus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject  74936  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  75097

Range 4: 5354969 to 5355130 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Plus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject5354969  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  5355130

Range 5: 2116059 to 2116100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Minus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject2116059  RQFI*VLTLRPYSP  2116100

Range 6: 4150465 to 4150506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject4150465  RQFI*VLTLRPYSP  4150506

Range 7: 75155 to 75196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Minus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject  75155  RQFI*VLTLRPYSP  75196

Range 8: 5354870 to 5354911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject5354870  RQFI*VLTLRPYSP  5354911

Shewanella piezotolerans WP3, complete genome

Sequence ID: NC_011566.1 Length: 5396476 Number of Matches: 8

Range 1: 2115840 to 2116001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Minus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject2115840  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  2116001

Range 2: 4150564 to 4150725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Plus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject4150564  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  4150725

Range 3: 74936 to 75097 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Minus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject  74936  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  75097

Range 4: 5354969 to 5355130 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 25/54(46%) 0/54(0%) Minus/Plus
Query       29  VGIVYG*D*DGI*SSSSPQLSFLINENILGKCFRSCSSFINPRISPLTMKYECP  190
                V IVYG D  GI*S   P LS+L      G   R   SF + RISPL +K+  P
Subject5354969  VDIVYGVDYQGI*SCLLPTLSYLSVSLCPGGRLRHRYSFRSLRISPLHLKFYPP  5355130

Range 5: 2116059 to 2116100 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Minus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject2116059  RQFI*VLTLRPYSP  2116100

Range 6: 4150465 to 4150506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject4150465  RQFI*VLTLRPYSP  4150506

Range 7: 75155 to 75196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Minus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject  75155  RQFI*VLTLRPYSP  75196

Range 8: 5354870 to 5354911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query      261  RQFL*VSALRPYSP  302
                RQF+*V  LRPYSP
Subject5354870  RQFI*VLTLRPYSP  5354911

Streptococcus pyogenes MGAS10750, complete genome

Sequence ID: CP000262.1 Length: 1937111 Number of Matches: 12

Range 1: 17700 to 17861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject  17700  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  17861

Range 2: 23701 to 23862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject  23701  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  23862

Range 3: 82877 to 83038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject  82877  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  83038

Range 4: 265960 to 266121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject 265960  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  266121

Range 5: 1613964 to 1614125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Minus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject1613964  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  1614125

Range 6: 1367398 to 1367559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Minus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject1367398  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  1367559

Range 7: 17928 to 17969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject  17928  GSTTARLKLKGIDG  17969

Range 8: 23929 to 23970 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject  23929  GSTTARLKLKGIDG  23970

Range 9: 83105 to 83146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject  83105  GSTTARLKLKGIDG  83146

Range 10: 266188 to 266229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject 266188  GSTTARLKLKGIDG  266229

Range 11: 1613856 to 1613897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Minus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject1613856  GSTTARLKLKGIDG  1613897

Range 12: 1367290 to 1367331 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Minus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject1367290  GSTTARLKLKGIDG  1367331

Streptococcus pyogenes MGAS10750, complete genome

Sequence ID: NC_008024.1 Length: 1937111 Number of Matches: 12

Range 1: 17700 to 17861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject  17700  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  17861

Range 2: 23701 to 23862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject  23701  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  23862

Range 3: 82877 to 83038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject  82877  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  83038

Range 4: 265960 to 266121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Plus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject 265960  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  266121

Range 5: 1613964 to 1614125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Minus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject1613964  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  1614125

Range 6: 1367398 to 1367559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/54(39%) 0/54(0%) Plus/Minus
Query       23  QSGAFVFHSQR*NSWIYERRTTAKAFAKDVFINQERKLGARRRSDTVLVSTIND  184
                Q G   FH  R*N+ IY     AKA    V   + RK G +   DT++V  +ND
Subject1367398  QKGRVEFHV*R*NA*IYGGTPVAKAALWSVTDAEARKRGEQTGLDTLVVHAVND  1367559

Range 7: 17928 to 17969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject  17928  GSTTARLKLKGIDG  17969

Range 8: 23929 to 23970 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject  23929  GSTTARLKLKGIDG  23970

Range 9: 83105 to 83146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject  83105  GSTTARLKLKGIDG  83146

Range 10: 266188 to 266229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject 266188  GSTTARLKLKGIDG  266229

Range 11: 1613856 to 1613897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Minus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject1613856  GSTTARLKLKGIDG  1613897

Range 12: 1367290 to 1367331 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 12/14(86%) 0/14(0%) Plus/Minus
Query      263  GSMVARLKLKGIDG  304
                GS  ARLKLKGIDG
Subject1367290  GSTTARLKLKGIDG  1367331

Grapevine leafroll associated virus 1 isolate 12.2.1 coat protein like gene, partial sequence

Sequence ID: HQ442266.1 Length: 544 Number of Matches: 5

Range 1: 439 to 528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 24/30(80%) 0/30(0%) Plus/Plus
Query      100  CQGCFH*SRTKVGGSKTIRYRPSLNHKRCR  189
                C GCFH*SRTKVGGSKTIRYRP L+H + R
Subject    439  CAGCFH*SRTKVGGSKTIRYRPILHHNKQR  528

Range 2: 438 to 518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 24/27(89%) 0/27(0%) Minus/Minus
Query       99  LWLRLGRYLIVFEPPTFVLD**KHPWQ  179
                LW R+GRYLIVFEPPTFVLD**KHP Q
Subject    438  LW*RIGRYLIVFEPPTFVLD**KHPAQ  518

Range 3: 431 to 517 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 24/29(83%) 0/29(0%) Plus/Plus
Query       92  KAFAKDVFINQERKLGARRRSDTVLVSTI  178
                +AFA+DVFINQERKLGAR+RSDTVL  TI
Subject    431  EAFARDVFINQERKLGARKRSDTVLFFTI  517

Range 4: 433 to 516 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 23/28(82%) 0/28(0%) Minus/Minus
Query       94  MVETRTVSDRLRAPNFRS*LMKTSLANA  177
                MV+ RTVSDR RAPNFRS*LMKTS A A
Subject    433  MVKNRTVSDRFRAPNFRS*LMKTSRAKA  516

Range 5: 447 to 518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 21/24(88%) 0/24(0%) Plus/Plus
Query      108  MFSLIKNESWGLEDDQIPS*SQP*  179
                MFSLIKNESWGLE+DQIPS S P*
Subject    447  MFSLIKNESWGLENDQIPSYSSP*  518

Nucleotide Sequence (525 letters)

Query ID:ds2016-133_14
Query definition:No definition line
Query length:603
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 7 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
525

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 8

Range 1: 2423 to 2932 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
393.3 bits(852) 0.0 165/170(97%) 0/170(0%) Minus/Plus
Query       16  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG  525
                VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG
Subject   2423  VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG  2932

Range 2: 2423 to 2932 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
367.2 bits(795) 0.0 153/170(90%) 0/170(0%) Plus/Minus
Query       16  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH  525
                TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDV PE+TYNLLHGMSVSIAY S SIHYHIA SHHFHTQFWYS*AAVSGCQLYW+HQAQLEYFY+ LL*CL QF+NI*V+DVNH+TN RFMITKA V LAVR+VLR LFLKH
Subject   2423  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKH  2932

Range 3: 2424 to 2930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
348.8 bits(755) 0.0 150/169(89%) 0/169(0%) Plus/Minus
Query       18  HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A  524
                HQQSPVS*P+YVP* +STLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERR SR+NL*SSARNE KHRL L QYTLSHR FAPLPHPVLV*LGCRLWLSALL TSSTTRIFL  SSLVL PI+KHLS RRQP*NQ  LYDHKSACP GST*CSS+PLS*A
Subject   2424  HQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*CSSQPLS*A  2930

Range 4: 2424 to 2933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 152/170(89%) 0/170(0%) Minus/Plus
Query       15  CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV  524
                CLRKR RRT RTA WT AFVIIKR+LV WLTS T*MF NW KH*RR+ *KYSSCA*C Q*S*QPETAA*LYQNWVWKWCE+AM**CIL E *AMLTLIPCRRL*V SG TSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRR LRDIVWL*YRRLLMV
Subject   2424  CLRKRLRRTSRTAKWTRAFVIIKRQLVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMV  2933

Range 5: 2425 to 2931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.9 bits(718) 0.0 149/169(88%) 0/169(0%) Minus/Plus
Query       17  A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W  523
                A*ERG EEH+VLP GHALL*S*S  WF+G*RL LRCF IG STREE +KNIRVVLDV NRADSQRRQPNYTRTGCGSGAK RCDNVYCRR RRCL SFRAEDYKF RE RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVD  *GT* GYDTGDC*W
Subject   2425  A*ERGCEEHHVLPNGHALL*S*SASWFHG*RLRLRCF*IGASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*W  2931

Range 6: 2722 to 2931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 67/70(96%) 0/70(0%) Plus/Minus
Query       17  PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  226
                PSAISGIIT+LCPL  VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC
Subject   2722  PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  2931

Range 7: 2557 to 2685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 42/43(98%) 0/43(0%) Plus/Minus
Query      263  VYIIXXXXXXXXXXXXGIVRLPSLAVSSIGNIKHNSNIFMSFF  391
                VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIF+SFF
Subject   2557  VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFISFF  2685

Range 8: 2425 to 2490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/22(91%) 0/22(0%) Plus/Minus
Query      458  L*SQKRMSNWQYVMFFAASFLS  523
                L*SQKR+S WQYVMFFAASFLS
Subject   2425  L*SQKRVSIWQYVMFFAASFLS  2490

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 8

Range 1: 2423 to 2932 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
393.3 bits(852) 0.0 165/170(97%) 0/170(0%) Minus/Plus
Query       16  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG  525
                VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG
Subject   2423  VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG  2932

Range 2: 2423 to 2932 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
367.2 bits(795) 0.0 153/170(90%) 0/170(0%) Plus/Minus
Query       16  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH  525
                TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDV PE+TYNLLHGMSVSIAY S SIHYHIA SHHFHTQFWYS*AAVSGCQLYW+HQAQLEYFY+ LL*CL QF+NI*V+DVNH+TN RFMITKA V LAVR+VLR LFLKH
Subject   2423  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVTPEETYNLLHGMSVSIAYASDSIHYHIAFSHHFHTQFWYS*AAVSGCQLYWKHQAQLEYFYIFLL*CLRQFKNI*VVDVNHETNWRFMITKARVHLAVRDVLRSLFLKH  2932

Range 3: 2424 to 2930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
348.8 bits(755) 0.0 150/169(89%) 0/169(0%) Plus/Minus
Query       18  HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A  524
                HQQSPVS*P+YVP* +STLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERR SR+NL*SSARNE KHRL L QYTLSHR FAPLPHPVLV*LGCRLWLSALL TSSTTRIFL  SSLVL PI+KHLS RRQP*NQ  LYDHKSACP GST*CSS+PLS*A
Subject   2424  HQQSPVS*PDYVP*TSSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRYSRRNL*SSARNECKHRLRLRQYTLSHRLFAPLPHPVLV*LGCRLWLSALLETSSTTRIFLYLSSLVLAPIQKHLSRRRQP*NQLALYDHKSACPFGST*CSSQPLS*A  2930

Range 4: 2424 to 2933 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 152/170(89%) 0/170(0%) Minus/Plus
Query       15  CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV  524
                CLRKR RRT RTA WT AFVIIKR+LV WLTS T*MF NW KH*RR+ *KYSSCA*C Q*S*QPETAA*LYQNWVWKWCE+AM**CIL E *AMLTLIPCRRL*V SG TSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRR LRDIVWL*YRRLLMV
Subject   2424  CLRKRLRRTSRTAKWTRAFVIIKRQLVSWLTSTT*MFLNWRKH*RRKI*KYSSCA*CFQ*S*QPETAA*LYQNWVWKWCEKAM**CILSEA*AMLTLIPCRRL*VSSGVTSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRRLRDIVWL*YRRLLMV  2933

Range 5: 2425 to 2931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.9 bits(718) 0.0 149/169(88%) 0/169(0%) Minus/Plus
Query       17  A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W  523
                A*ERG EEH+VLP GHALL*S*S  WF+G*RL LRCF IG STREE +KNIRVVLDV NRADSQRRQPNYTRTGCGSGAK RCDNVYCRR RRCL SFRAEDYKF RE RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVD  *GT* GYDTGDC*W
Subject   2425  A*ERGCEEHHVLPNGHALL*S*SASWFHG*RLRLRCF*IGASTREERYKNIRVVLDVSNRADSQRRQPNYTRTGCGSGAKRRCDNVYCRRRRRCLHSFRAEDYKFLRE*RRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDDV*GT*SGYDTGDC*W  2931

Range 6: 2722 to 2931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 67/70(96%) 0/70(0%) Plus/Minus
Query       17  PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  226
                PSAISGIIT+LCPL  VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC
Subject   2722  PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  2931

Range 7: 2557 to 2685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 42/43(98%) 0/43(0%) Plus/Minus
Query      263  VYIIXXXXXXXXXXXXGIVRLPSLAVSSIGNIKHNSNIFMSFF  391
                VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIF+SFF
Subject   2557  VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFISFF  2685

Range 8: 2425 to 2490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/22(91%) 0/22(0%) Plus/Minus
Query      458  L*SQKRMSNWQYVMFFAASFLS  523
                L*SQKR+S WQYVMFFAASFLS
Subject   2425  L*SQKRVSIWQYVMFFAASFLS  2490

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 8

Range 1: 2564 to 3073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
393.3 bits(852) 0.0 165/170(97%) 0/170(0%) Minus/Plus
Query       16  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG  525
                VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG
Subject   2564  VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG  3073

Range 2: 2564 to 3073 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
373.6 bits(809) 0.0 156/170(92%) 0/170(0%) Plus/Minus
Query       16  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH  525
                TISNLRYHNQTMSLKRRRHFPRQIVRG+SGIDNAQRKLMVTKPVAYILDRKSTAT *LNDVAPEKTYNLLHGMSVSIAY S SIHYH+ALSHHFHTQFWYS AAVSGCQLYWEHQAQLEY YV LL*CLCQFENI*VIDVNH+TNRRFMITKA + LAVR VLR LFLKH
Subject   2564  TISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMVTKPVAYILDRKSTATW*LNDVAPEKTYNLLHGMSVSIAYASDSIHYHVALSHHFHTQFWYSKAAVSGCQLYWEHQAQLEYLYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLFLKH  3073

Range 3: 2565 to 3071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
352.5 bits(763) 0.0 152/169(90%) 0/169(0%) Plus/Minus
Query       18  HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A  524
                HQQSPVS*P+YVP* +STLSSSNCTR ERYR*RTEKTDGNQACSLHTRPKKHCH VTERRCSRKNL*SSARNE KHRL L QYTLS RPFAPLPHPVLV* GCRLWLSALLGTSSTTRI LC SSLVLVPIRKHLSHRRQP*NQP LYDHKSA P GST CSS+PLS*A
Subject   2565  HQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDGNQACSLHTRPKKHCHLVTERRCSRKNL*SSARNECKHRLRLRQYTLSRRPFAPLPHPVLV**GCRLWLSALLGTSSTTRISLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGSTLCSSQPLS*A  3071

Range 4: 2565 to 3074 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.0 bits(751) 0.0 155/170(91%) 0/170(0%) Minus/Plus
Query       15  CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV  524
                CLRKR RRT RTA W  AFVIIKRRLV WLTSMT*MFSNWHKH*RR+T*+YSSCA*CSQ*S*QPETAA LYQNWVWKWCERA **CIL E *AMLTLIPCRRL*VFSGATSFSY VAVLFRSSM*ATGLVTISFLCALSIPL PRTI*RGKCRR LRDIVWL*YRRLLMV
Subject   2565  CLRKRLRRT*RTAKWIRAFVIIKRRLVSWLTSMT*MFSNWHKH*RRKT*RYSSCA*CSQ*S*QPETAALLYQNWVWKWCERAT**CILSEA*AMLTLIPCRRL*VFSGATSFSYQVAVLFRSSM*ATGLVTISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMV  3074

Range 5: 2566 to 3072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.9 bits(729) 0.0 152/169(90%) 0/169(0%) Minus/Plus
Query       17  A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W  523
                A*ERG EEH VLP G+ALL*S*S GWF+G*RL*LRCFRIGTSTREE HK+IRVVLDVPNRADSQRRQP YTRTGCGSGAKGR DNVYCRR RRCL SFRAEDYKFFREQRRSVT+WQCFFGRVCRLQAWLPSVFSVRYRYRS LVQFDEESVD  *GT* GYDTGDC*W
Subject   2566  A*ERGCEEHNVLPNGYALL*S*SAGWFHG*RL*LRCFRIGTSTREERHKDIRVVLDVPNRADSQRRQPYYTRTGCGSGAKGRRDNVYCRRRRRCLHSFRAEDYKFFREQRRSVTKWQCFFGRVCRLQAWLPSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*W  3072

Range 6: 2863 to 3072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 67/70(96%) 0/70(0%) Plus/Minus
Query       17  PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  226
                PSAISGIIT+LCPL  VDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC
Subject   2863  PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  3072

Range 7: 2698 to 2826 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 43/43(100%) 0/43(0%) Plus/Minus
Query      263  VYIIXXXXXXXXXXXXGIVRLPSLAVSSIGNIKHNSNIFMSFF  391
                VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFMSFF
Subject   2698  VYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFMSFF  2826

Range 8: 2566 to 2631 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/22(91%) 0/22(0%) Plus/Minus
Query      458  L*SQKRMSNWQYVMFFAASFLS  523
                L*SQKR+S WQYVMFFAASFLS
Subject   2566  L*SQKRVSIWQYVMFFAASFLS  2631

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8

Range 1: 2499 to 3008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
390.5 bits(846) 0.0 164/170(96%) 0/170(0%) Minus/Plus
Query       16  VLKKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG  525
                VLKKEAAKNITYCQ+D RFCDHKA VGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGD IMYTVGGVGDAY HSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVST+FKGHSLVMIPEIADG
Subject   2499  VLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDEIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADG  3008

Range 2: 2499 to 3008 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
361.7 bits(783) 0.0 152/170(89%) 0/170(0%) Plus/Minus
Query       16  TISNLRYHNQTMSLKRRRHFPRQIVRGMSGIDNAQRKLMVTKPVAYILDRKSTATG*LNDVAPEKTYNLLHGMSVSIAYTSYSIHYHIALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVLLL*CLCQFENI*VIDVNHKTNRRFMITKAHVQLAVRNVLRGLFLKH  525
                TISNLRYHNQTMSLKRRRHFPRQIVRG+SGIDNAQRKLM+TKPVAYILDRKSTAT *LNDVAPEKT +LLHGMSVSIAY S  IHY +ALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYV LL*CLCQFENI*VIDVNH+TNRRFMITKA + LAVR VLR L LKH
Subject   2499  TISNLRYHNQTMSLKRRRHFPRQIVRGVSGIDNAQRKLMITKPVAYILDRKSTATW*LNDVAPEKTNDLLHGMSVSIAYASDCIHYLVALSHHFHTQFWYS*AAVSGCQLYWEHQAQLEYFYVFLL*CLCQFENI*VIDVNHETNRRFMITKARIHLAVRYVLRSLLLKH  3008

Range 3: 2500 to 3006 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.6 bits(750) 0.0 150/169(89%) 0/169(0%) Plus/Minus
Query       18  HQQSPVS*PNYVP*KTSTLSSSNCTRHERYR*RTEKTDGNQACSLHTRPKKHCHWVTERRCSRKNL*SSARNERKHRLHLLQYTLSHRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCPSSLVLVPIRKHLSHRRQP*NQPPLYDHKSACPIGST*CSSRPLS*A  524
                HQQSPVS*P+YVP* +STLSSSNCTR ERYR*RTEKTD NQACSLHTRPKKHCH VTERRCSRKN *SSARNE KHRL L  YTLS RPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLC SSLVLVPIRKHLSHRRQP*NQP LYDHKSA P GST CSS+P S*A
Subject   2500  HQQSPVS*PDYVP*TSSTLSSSNCTRRERYR*RTEKTDDNQACSLHTRPKKHCHLVTERRCSRKN**SSARNECKHRLRLRLYTLSRRPFAPLPHPVLV*LGCRLWLSALLGTSSTTRIFLCLSSLVLVPIRKHLSHRRQP*NQPALYDHKSAYPFGSTLCSSQPPS*A  3006

Range 4: 2500 to 3009 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.5 bits(728) 0.0 151/170(89%) 0/170(0%) Minus/Plus
Query       15  CLRKRPRRTLRTANWTCAFVIIKRRLVLWLTSMT*MFSNWHKH*RRRT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERAM**CIL*EV*AMLTLIPCRRL*VFSGATSFSYPVAVLFRSSM*ATGLVTISFLCALSIPLMPRTI*RGKCRRLLRDIVWL*YRRLLMV  524
                CLR+R RRT RTA W  AFVIIKRRLV WLTSMT*MFSNWHKH*RR+T*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERA  *CI  E *AMLTLIPCRR  VFSGATSFSY VAVLFRSSM*ATGLV ISFLCALSIPL PRTI*RGKCRR LRDIVWL*YRRLLMV
Subject   2500  CLRRRLRRT*RTAKWIRAFVIIKRRLVSWLTSMT*MFSNWHKH*RRKT*KYSSCA*CSQ*S*QPETAA*LYQNWVWKWCERATR*CIQSEA*AMLTLIPCRRSLVFSGATSFSYQVAVLFRSSM*ATGLVIISFLCALSIPLTPRTI*RGKCRRRLRDIVWL*YRRLLMV  3009

Range 5: 2501 to 3007 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
329.6 bits(713) 0.0 149/169(88%) 0/169(0%) Minus/Plus
Query       17  A*ERGREEHYVLPIGHALL*S*SGGWFYG*RL*LRCFRIGTSTREEGHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRCDNVYXXXXXXXXRSFRAEDYKFFREQRRSVTQWQCFFGRVCRLQAWLPSVFSVRYRYRSCLVQFDEESVDVF*GT*FGYDTGDC*W  523
                A*E G EEH VLP G+ALL*S*S GWF+G*RL*LRCFRIGTSTREE HKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGR DNVY RR RRCL SFRAED+ FFREQRRSVT+WQCFFGRVCRLQAWL SVFSVRYRYRS LVQFDEESVD  *GT* GYDTGDC*W
Subject   2501  A*EGGCEEHNVLPNGYALL*S*SAGWFHG*RL*LRCFRIGTSTREERHKNIRVVLDVPNRADSQRRQPNYTRTGCGSGAKGRRDNVYSRRRRRCLHSFRAEDH*FFREQRRSVTKWQCFFGRVCRLQAWLSSVFSVRYRYRSRLVQFDEESVDDV*GT*SGYDTGDC*W  3007

Range 6: 2798 to 3007 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 65/70(93%) 0/70(0%) Plus/Minus
Query       17  PSAISGIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALPLGN*TTLLPKKLIIFC  226
                PSAISGIIT+LCPL  VDTFLVKLYEA*AVSITHREN* *PSL*PTYSTEKALPLGN*TTLLPKKL+IFC
Subject   2798  PSAISGIITRLCPLNVVDTFLVKLYEA*AVSITHREN***PSL*PTYSTEKALPLGN*TTLLPKKLMIFC  3007

Range 7: 2633 to 2761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 42/43(98%) 0/43(0%) Plus/Minus
Query      263  VYIIXXXXXXXXXXXXGIVRLPSLAVSSIGNIKHNSNIFMSFF  391
                VYII+SPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFMSFF
Subject   2633  VYIISSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFMSFF  2761

Range 8: 2501 to 2566 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/22(91%) 0/22(0%) Plus/Minus
Query      458  L*SQKRMSNWQYVMFFAASFLS  523
                L*SQKR+S WQYVMFFAASFLS
Subject   2501  L*SQKRVSIWQYVMFFAASFLS  2566

Pineapple mealybug wilt associated virus 2 polyprotein (ORF1a) and RNA dependent RNA polymerase genes, partial cds; and hydrophobic protein p5, heat shock protein 70, p46, coat protein, diverged coat protein, p20, p22, and p6 genes, complete cds

Sequence ID: AF283103.1 Length: 14861 Number of Matches: 3

Range 1: 1297 to 1800 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 73/168(43%) 0/168(0%) Minus/Plus
Query       16  KKEAAKNITYCQLDMRFCDHKAAVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYAHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTSFKGHSLVMIPEIADG  519
                K+ AA  +T C      C   A  GF VDVYD+ + +LA  +EKK+++ F L LM+P+EL A DG + +  L V V R+GD + Y+VG  G++Y HS + I ++F +  V    G+ F V+Y GYRLGYH  SLC+ D++ AS ++ R + TSF G S+VMIP + +G
Subject   1297  KEVAAAKVTSCGGRFEDCGVSADAGFFVDVYDMSLQQLADGMEKKNMRTFSLALMYPVELLAADGEIYLETLDVLVKREGDCVRYSVGVTGESYTHSYRCISAYFTAPAVVARGGTVFKVQYEGYRLGYHHISLCLSDSSSASVSVQRHIRTSFHGKSIVMIPRLNNG  1800

Range 2: 1638 to 1784 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 22/49(45%) 0/49(0%) Plus/Minus
Query       32  GIITKLCPLKDVDTFLVKLYEA*AVSITHREN*W*PSL*PTYSTEKALP  178
                GIIT L P K+V   L  L  A  +S+ H++ *W P+L*P+Y T   +P
Subject   1638  GIITMLFPWKEVRMCLCTLTLALELSLKHKDI*WYPNL*PSYCTLNTVP  1784

Range 3: 1516 to 1584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 11/23(48%) 0/23(0%) Plus/Minus
Query      232  MSVSIAYTSYSIHYHIALSHHFH  300
                MSV++A  +++I + IALS H H
Subject   1516  MSVALACNAHAIAHTIALSLH*H  1584

Nucleotide Sequence (317 letters)

Query ID:ds2016-133_14
Query definition:No definition line
Query length:603
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 7 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
317

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 6

Range 1: 6508 to 6798 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
224.2 bits(483) 0.0 89/97(92%) 0/97(0%) Plus/Plus
Query       27  AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F  317
                ++S S*CDEFAWMC*IG*EGFGRRIHEEC+AV GEFTTWWRQDNASRRRIFWKEEACEDCHSEHRK  GY*LGYSSQRRKEGD FGGEDRELVDC*F
Subject   6508  SISVS*CDEFAWMC*IG*EGFGRRIHEECKAVRGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKCCGY*LGYSSQRRKEGD*FGGEDRELVDC*F  6798

Range 2: 6521 to 6796 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(461) 0.0 91/92(99%) 0/92(0%) Plus/Plus
Query       40  HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  315
                HDAMNLRGCVRLAKRALVGEYMKSV+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN
Subject   6521  HDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  6796

Range 3: 6526 to 6798 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.6 bits(449) 0.0 90/91(99%) 0/91(0%) Minus/Minus
Query       45  ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA  317
                ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADS TLFMYSPTKALLANLTHPRKFIA
Subject   6526  ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSLTLFMYSPTKALLANLTHPRKFIA  6798

Range 4: 6515 to 6796 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.1 bits(439) 0.0 87/94(93%) 0/94(0%) Minus/Minus
Query       34  INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH  315
                INNPRVRGLRHQI LLLSFSGSNSRVNIR  S VRCGNLRTLLPSKIFVDETRCLASTRW*IHR Q +TLHVFADQSPLSQSNTSTQIHRIMKH
Subject   6515  INNPRVRGLRHQISLLLSFSGSNSRVNIRSTSCVRCGNLRTLLPSKIFVDETRCLASTRW*IHRGQPYTLHVFADQSPLSQSNTSTQIHRIMKH  6796

Range 5: 6513 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 72/78(92%) 0/78(0%) Minus/Minus
Query       32  FLLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL  265
                FLLWLE*PS*YP+ F CSLWQSSHASSFQNIRRRDALSCLHQVVNSP+TA HSSCIRRPKPS*PI*HIHANSSHHE L
Subject   6513  FLLWLE*PS*YPQHFLCSLWQSSHASSFQNIRRRDALSCLHQVVNSPRTALHSSCIRRPKPS*PI*HIHANSSHHETL  6746

Range 6: 6516 to 6797 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 88/94(94%) 0/94(0%) Plus/Plus
Query       35  CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEKEXXXXXXXXXXXXXGLLI  316
                CFMMR*ICVDVLDWLRGLWSANT*RV* C R*IHHLVEARQRVSSTNILEGRSVRRLPQRT E  RILTRLFEPEKERRR IWWRRPRTRGLLI
Subject   6516  CFMMR*ICVDVLDWLRGLWSANT*RV*GCPR*IHHLVEARQRVSSTNILEGRSVRRLPQRTQEVLRILTRLFEPEKERRRLIWWRRPRTRGLLI  6797

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 6

Range 1: 6443 to 6733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 87/97(90%) 0/97(0%) Plus/Plus
Query       27  AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F  317
                + S S*CDEFAWMC*IG*EGFGRRIHEECEA+ GEFTTWWRQDNASR RIFWKEEACEDCHSEHRK   Y* GYSSQRRKEGDRFGGEDRELVDC*F
Subject   6443  STSVS*CDEFAWMC*IG*EGFGRRIHEECEAIRGEFTTWWRQDNASR*RIFWKEEACEDCHSEHRKCCRY*RGYSSQRRKEGDRFGGEDRELVDC*F  6733

Range 2: 6456 to 6731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.4 bits(461) 0.0 91/92(99%) 0/92(0%) Plus/Plus
Query       40  HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  315
                HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADIN+AIRAREGKKETDLVAKTANSWIVN
Subject   6456  HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINAAIRAREGKKETDLVAKTANSWIVN  6731

Range 3: 6461 to 6733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
208.6 bits(449) 0.0 90/91(99%) 0/91(0%) Minus/Minus
Query       45  ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA  317
                ELTIHEFAVFATKSVSFFPSLARIA LISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA
Subject   6461  ELTIHEFAVFATKSVSFFPSLARIAALISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA  6733

Range 4: 6450 to 6731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 87/94(93%) 0/94(0%) Minus/Minus
Query       34  INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH  315
                INNPRVRGLRHQIGLLLSFSGSNSRVNI   S VRCGNLRTLLPSKIFV+ETRCLASTRW*IHR  LHTLHVFADQSPLSQSNTSTQIHRIMKH
Subject   6450  INNPRVRGLRHQIGLLLSFSGSNSRVNICSTSCVRCGNLRTLLPSKIFVNETRCLASTRW*IHRG*LHTLHVFADQSPLSQSNTSTQIHRIMKH  6731

Range 5: 6448 to 6681 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 69/78(88%) 0/78(0%) Minus/Minus
Query       32  FLLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL  265
                FLLWLE*P *Y + F CSLWQSSHASSFQNIR+RDALSCLHQVVNSP+ ASHSSCIRRPKPS*PI*HIHANSSHHE L
Subject   6448  FLLWLE*PR*YLQHFLCSLWQSSHASSFQNIRQRDALSCLHQVVNSPRIASHSSCIRRPKPS*PI*HIHANSSHHETL  6681

Range 6: 6451 to 6732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 87/94(93%) 0/94(0%) Plus/Plus
Query       35  CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEKEXXXXXXXXXXXXXGLLI  316
                CFMMR*ICVDVLDWLRGLWSANT*RV*S  R*IHHLVEARQRVS TNILEGRSVRRLPQRT E  +ILTRLFEPEKERRRPIWWRRPRTRGLLI
Subject   6451  CFMMR*ICVDVLDWLRGLWSANT*RV*SYPR*IHHLVEARQRVSLTNILEGRSVRRLPQRTQEVLQILTRLFEPEKERRRPIWWRRPRTRGLLI  6732

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 6

Range 1: 2582 to 2872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 84/97(87%) 0/97(0%) Plus/Plus
Query       27  AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F  317
                + S S*CDEFAWMC*IG EGFGRRIHEECE V GEFTTWWRQDNASR R+FWKEEACEDCHSEHRK  GY*LGYSSQRR+EGDRF  EDRELVDC*F
Subject   2582  STSVS*CDEFAWMC*IGKEGFGRRIHEECEVVRGEFTTWWRQDNASR*RVFWKEEACEDCHSEHRKCCGY*LGYSSQRREEGDRFDSEDRELVDC*F  2872

Range 2: 2595 to 2870 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(460) 0.0 90/92(98%) 0/92(0%) Plus/Plus
Query       40  HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  315
                HDAMNLRGCVRLAKRALVGEYMKSV+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDL+AKTANSWIVN
Subject   2595  HDAMNLRGCVRLAKRALVGEYMKSVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLIAKTANSWIVN  2870

Range 3: 2600 to 2872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 87/91(96%) 0/91(0%) Minus/Minus
Query       45  ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA  317
                ELTIHEFAVFA KSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+ TLFMYSPTKAL ANLTHPRKFIA
Subject   2600  ELTIHEFAVFAIKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTLFMYSPTKALFANLTHPRKFIA  2872

Range 4: 2589 to 2870 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.2 bits(424) 0.0 84/94(89%) 0/94(0%) Minus/Minus
Query       34  INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH  315
                INNPRVRGLR+QIGLLL FSGSNSRVNIR  S VRCGNLRTLLPSKI V+ETRCLASTRW*IHR Q HTLHVFADQSPL QSNTSTQIHRIMKH
Subject   2589  INNPRVRGLRYQIGLLLPFSGSNSRVNIRSTSCVRCGNLRTLLPSKILVNETRCLASTRW*IHRGQPHTLHVFADQSPLCQSNTSTQIHRIMKH  2870

Range 5: 2587 to 2817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 68/77(88%) 0/77(0%) Minus/Minus
Query       32  LLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL  262
                LLWLE*PS*YP+ F CSLWQSSHASSFQN R+RDALSCLHQVVNSP+T SHSSCIRRPKPS PI*HIHANSSHHE L
Subject   2587  LLWLE*PS*YPQHFLCSLWQSSHASSFQNTRQRDALSCLHQVVNSPRTTSHSSCIRRPKPSLPI*HIHANSSHHETL  2817

Range 6: 2590 to 2817 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 68/76(89%) 0/76(0%) Plus/Plus
Query       35  CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEK  262
                CFMMR*ICVDVLDW RGLWSANT*RV* C R*IHHLVEARQRVS T+ILEGRSVRRLPQRT E  RILTRLFEPEK
Subject   2590  CFMMR*ICVDVLDWQRGLWSANT*RV*GCPR*IHHLVEARQRVSLTSILEGRSVRRLPQRTQEVLRILTRLFEPEK  2817

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 6

Range 1: 6380 to 6655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(458) 0.0 90/92(98%) 0/92(0%) Plus/Plus
Query       40  HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  315
                HDAMNLRGCVRLAKRALVGEYMK+V+LSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN
Subject   6380  HDAMNLRGCVRLAKRALVGEYMKNVRLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  6655

Range 2: 6385 to 6657 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 87/91(96%) 0/91(0%) Minus/Minus
Query       45  ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA  317
                ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+ T FMYSPT ALLANLTHPRKFIA
Subject   6385  ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNLTFFMYSPTNALLANLTHPRKFIA  6657

Range 3: 6367 to 6657 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 81/97(84%) 0/97(0%) Plus/Plus
Query       27  AVSAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F  317
                + S S*CDEFAWMC*+G*EG GR IHEECE V GEFTTWWRQD+ASR RIFWKEEACEDC+SEH KR  Y*LGYSSQRR+EGDRFG EDRELVDC*F
Subject   6367  STSVS*CDEFAWMC*VG*EGVGR*IHEECEVVRGEFTTWWRQDDASR*RIFWKEEACEDCYSEHWKRCRY*LGYSSQRREEGDRFGSEDRELVDC*F  6657

Range 4: 6374 to 6655 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.4 bits(396) 0.0 80/94(85%) 0/94(0%) Minus/Minus
Query       34  INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH  315
                INNPRVRGLR+QIGLLL FSGSNSRVNI  AS VRC NLRTLLPSKIFV+ETR LASTRW*IHR Q H LHVF DQ PLSQ NTSTQIHRIMKH
Subject   6374  INNPRVRGLRYQIGLLLPFSGSNSRVNICSASSVRCSNLRTLLPSKIFVNETRRLASTRW*IHRGQPHILHVFTDQRPLSQPNTSTQIHRIMKH  6655

Range 5: 6372 to 6602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.6 bits(331) 0.0 65/77(84%) 0/77(0%) Minus/Minus
Query       32  LLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL  262
                LLWLE*PS*Y +RF+CSL QSSHASSFQNIR+RDA SCLHQVVNSP+T SHSSCI RP PS*P *HIHANSSHHE L
Subject   6372  LLWLE*PS*YLQRFQCSL*QSSHASSFQNIRQRDASSCLHQVVNSPRTTSHSSCIHRPTPS*PT*HIHANSSHHETL  6602

Range 6: 6375 to 6602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 64/76(84%) 0/76(0%) Plus/Plus
Query       35  CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEK  262
                CFMMR*ICVDVL WLRG WS NT*R+* C R*IHHLVEAR+RVS TNILEGRSVRRL QRT EA +ILTRLFEPEK
Subject   6375  CFMMR*ICVDVLGWLRGRWSVNT*RM*GCPR*IHHLVEARRRVSLTNILEGRSVRRLLQRTLEALQILTRLFEPEK  6602

Grapevine leafroll associated virus 1 replicase and RNA dependent RNA polymerase genes, partial cds; hypothetical protein and heat shock protein 70 like protein genes, complete cds; and heat shock protein 90 like protein gene, partial cds

Sequence ID: EF103901.1 Length: 5715 Number of Matches: 6

Range 1: 123 to 407 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.5 bits(453) 0.0 83/95(87%) 0/95(0%) Plus/Plus
Query       33  SAS*CDEFAWMC*IG*EGFGRRIHEECEAVCGEFTTWWRQDNASRRRIFWKEEACEDCHSEHRKRRGY*LGYSSQRRKEGDRFGGEDRELVDC*F  317
                S S*CDEFAWMC IG*EGFGR IHEECE VCGEFTTWWRQDNAS  R+FWKEEACEDCHSEHRKR GY*LGYSSQRR+EG R G EDRELVDC*F
Subject    123  SVS*CDEFAWMCRIG*EGFGR*IHEECEVVCGEFTTWWRQDNASC*RVFWKEEACEDCHSEHRKRCGY*LGYSSQRREEGTRLGSEDRELVDC*F  407

Range 2: 130 to 405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.3 bits(441) 0.0 88/92(96%) 0/92(0%) Plus/Plus
Query       40  HDAMNLRGCVRLAKRALVGEYMKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIRAREGKKETDLVAKTANSWIVN  315
                HDAMNLRGCV LAKRALVGEY KSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAI+AREGKKE DLVAKTANSWIVN
Subject    130  HDAMNLRGCVGLAKRALVGEYTKSVKLSAVNSPPGGGKTTRLVDEYFGRKKRAKIATANTGSAADINSAIQAREGKKEPDLVAKTANSWIVN  405

Range 3: 135 to 407 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 86/91(95%) 0/91(0%) Minus/Minus
Query       45  ELTIHEFAVFATKSVSFFPSLARIAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADSFTLFMYSPTKALLANLTHPRKFIA  317
                ELTIHEFAVFATKS SFFPSLA IAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTAD+FTLF+YSPTKALLAN THPRKFIA
Subject    135  ELTIHEFAVFATKSGSFFPSLA*IAELISAALPVFAVAIFARFFLPKYSSTRRVVLPPPGGEFTADNFTLFVYSPTKALLANPTHPRKFIA  407

Range 4: 124 to 405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 81/94(86%) 0/94(0%) Minus/Minus
Query       34  INNPRVRGLRHQIGLLLSFSGSNSRVNIRGASGVRCGNLRTLLPSKIFVDETRCLASTRW*IHRRQLHTLHVFADQSPLSQSNTSTQIHRIMKH  315
                INNPRVRGLR+Q+G LL FSG NSRVNIR AS VRCGNLRTLLPSKI V++TRCLASTRW*IHRRQLHTL VF DQSPLSQS+TSTQIHRIMKH
Subject    124  INNPRVRGLRYQVGFLLPFSGLNSRVNIRSASCVRCGNLRTLLPSKILVNKTRCLASTRW*IHRRQLHTLRVFTDQSPLSQSDTSTQIHRIMKH  405

Range 5: 122 to 352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 68/77(88%) 0/77(0%) Minus/Minus
Query       32  LLWLE*PS*YPRRFRCSLWQSSHASSFQNIRRRDALSCLHQVVNSPQTASHSSCIRRPKPS*PI*HIHANSSHHEAL  262
                LLWLE*PS*YP+RF CSLWQSSHASSFQN R++DALSCLHQVVNSPQT SHSSCI RPKPS*PI HIHANSSHHE L
Subject    122  LLWLE*PS*YPQRFLCSLWQSSHASSFQNTRQQDALSCLHQVVNSPQTTSHSSCIHRPKPS*PIRHIHANSSHHETL  352

Range 6: 125 to 352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.7 bits(329) 0.0 67/76(88%) 0/76(0%) Plus/Plus
Query       35  CFMMR*ICVDVLDWLRGLWSANT*RV*SCLR*IHHLVEARQRVSSTNILEGRSVRRLPQRTPEAPRILTRLFEPEK  262
                CFMMR*ICVDV DWLRGLWS NT RV*SCLR*IHHLVEARQRV  T+ILEGRSVRRLPQRT EA RILTRLF+PEK
Subject    125  CFMMR*ICVDVSDWLRGLWSVNTRRV*SCLR*IHHLVEARQRVLLTSILEGRSVRRLPQRTQEALRILTRLFKPEK  352

Nucleotide Sequence (327 letters)

Query ID:ds2016-133_14
Query definition:No definition line
Query length:603
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 7 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
327

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
258.1 1366.1 28% 2.753e-67 92% KU674797.1
249.0 1338.1 28% 1.579e-64 94% KU674796.1
235.2 1279.5 28% 2.17e-60 88% JQ023131.1
235.2 1279.5 28% 2.17e-60 88% NC_016509.1
225.1 1223.6 28% 2.35e-57 86% KT000364.1

Alignments

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 7

Range 1: 5469 to 5792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.1 bits(557) 0.0 104/108(96%) 0/108(0%) Plus/Minus
Query        3  SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RMLL  326
                SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQ+CSISHHQHETRS*HPFCTSVSSNDRSSH ISVPPEAHQALCS PDSRANHHYRRI GCTC*RMLL
Subject   5469  SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQVCSISHHQHETRS*HPFCTSVSSNDRSSHLISVPPEAHQALCSNPDSRANHHYRRILGCTC*RMLL  5792

Range 2: 5468 to 5794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
247.1 bits(533) 0.0 106/109(97%) 0/109(0%) Plus/Minus
Query        1  HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECYF  327
                HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTL VLLYQAMIVALI FQFLPKLIKRFVP+LTRVRTTIIDVSSAALAEECYF
Subject   5468  HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLSVLLYQAMIVALI*FQFLPKLIKRFVPTLTRVRTTIIDVSSAALAEECYF  5794

Range 3: 5470 to 5793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.9 bits(526) 0.0 104/108(96%) 0/108(0%) Minus/Plus
Query        2  SSILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD  325
                SSILQQVQP+IRL*WWFARESG+EQSA**ASGGTEI *ELRSLLDTEVQKGCYDRVSC***EMLH WCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD
Subject   5470  SSILQQVQPRIRL*WWFARESGLEQSA**ASGGTEIR*ELRSLLDTEVQKGCYDRVSC***EMLHTWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD  5793

Range 4: 5468 to 5794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.3 bits(494) 0.0 106/109(97%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                EVAFFSKCSR YVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYT GVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM
Subject   5468  EVAFFSKCSRGYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTPGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  5794

Range 5: 5469 to 5792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.4 bits(479) 0.0 105/108(97%) 0/108(0%) Minus/Plus
Query        3  K*HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG  326
                K*HSSASAAEDTSIMVVRTRVR GTKRLMSFGRN*N MRATIIA*YRST+RVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG
Subject   5469  K*HSSASAAEDTSIMVVRTRVRVGTKRLMSFGRN*N*MRATIIA*YRSTERVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG  5792

Range 6: 5596 to 5793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 65/66(98%) 0/66(0%) Plus/Minus
Query        2  IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  199
                IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTP V*HFSSSA*NPIVAPFLYFCIKQ
Subject   5596  IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPGV*HFSSSA*NPIVAPFLYFCIKQ  5793

Range 7: 5470 to 5547 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 24/26(92%) 0/26(0%) Plus/Minus
Query      248  ALFHP*LACEPPL*TYLRLHLLKNAT  325
                ALF P*LACEPPL*TY RLHLLKNAT
Subject   5470  ALFQP*LACEPPL*TYPRLHLLKNAT  5547

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 7

Range 1: 5404 to 5727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 101/108(94%) 0/108(0%) Plus/Minus
Query        3  SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RMLL  326
                SPGSL+THHH PEDARQPLPSYSTAL*SEPDHSNLL* RLHQMC+ISHHQHETRS*HP CTSVSSNDRSSH ISVPPEAHQALCS PDSRANHHYRRIFGCTC*RMLL
Subject   5404  SPGSLQTHHHRPEDARQPLPSYSTAL*SEPDHSNLL*LRLHQMCNISHHQHETRS*HPSCTSVSSNDRSSHLISVPPEAHQALCSNPDSRANHHYRRIFGCTC*RMLL  5727

Range 2: 5403 to 5729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.6 bits(510) 0.0 102/109(94%) 0/109(0%) Plus/Minus
Query        1  HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECYF  327
                HPRAHY+HITI QKMLDNLSRLIRPHSKASLTIQIYCD AYTRCV FLIISMKPDRSTL VLLYQAMIVALI FQFLPKLIKRFVP+LTRVRTTIIDVSSAALAEECYF
Subject   5403  HPRAHYKHITIAQKMLDNLSRLIRPHSKASLTIQIYCDYAYTRCVTFLIISMKPDRSTLPVLLYQAMIVALI*FQFLPKLIKRFVPTLTRVRTTIIDVSSAALAEECYF  5729

Range 3: 5405 to 5728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 102/108(94%) 0/108(0%) Minus/Plus
Query        2  SSILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD  325
                SSILQQVQPKIRL*WWFARESG+EQSA**ASGGTEI *ELRSLLDTEVQ+GCYDRVSC***EMLHIWCKR HSKFEWSGSL*SAVE*DGRGCRASSG W*CV NEPGD
Subject   5405  SSILQQVQPKIRL*WWFARESGLEQSA**ASGGTEIR*ELRSLLDTEVQEGCYDRVSC***EMLHIWCKRSHSKFEWSGSL*SAVE*DGRGCRASSGRW*CVCNEPGD  5728

Range 4: 5403 to 5729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 108/109(99%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                EVAFFSKCSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM
Subject   5403  EVAFFSKCSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  5729

Range 5: 5404 to 5727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 101/108(94%) 0/108(0%) Minus/Plus
Query        3  K*HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG  326
                K*HSSASAAEDTSIMVVRTRVR GTKRLMSFGRN*N MRATIIA*YRST RVLRSGFMLMMRN THLV*A SQ*I*MVRLALECGRIRRERLSSIFW MVMC **ARG
Subject   5404  K*HSSASAAEDTSIMVVRTRVRVGTKRLMSFGRN*N*MRATIIA*YRSTGRVLRSGFMLMMRNVTHLV*A*SQ*I*MVRLALECGRIRRERLSSIFWAMVMCL**ARG  5727

Range 6: 5531 to 5728 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 66/66(100%) 0/66(0%) Plus/Minus
Query        2  IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  199
                IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ
Subject   5531  IPGLITNTSPSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  5728

Range 7: 5405 to 5482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 25/26(96%) 0/26(0%) Plus/Minus
Query      248  ALFHP*LACEPPL*TYLRLHLLKNAT  325
                ALF P*LACEPPL*TYLRLHLLKNAT
Subject   5405  ALFQP*LACEPPL*TYLRLHLLKNAT  5482

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7

Range 1: 5331 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 95/107(89%) 0/107(0%) Plus/Minus
Query        3  SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RML  323
                SPGS R HHHHPEDARQ LPSYSTAL*SEPDHSNL *QR HQMCSISHHQHETRS*HPFCTSVSSND +SHPISVPPEAHQAL S PDSRANHHYR  FGCTC RML
Subject   5331  SPGSSRRHHHHPEDARQSLPSYSTAL*SEPDHSNLR*QRSHQMCSISHHQHETRS*HPFCTSVSSNDHNSHPISVPPEAHQALYSNPDSRANHHYRHTFGCTCCRML  5651

Range 2: 5327 to 5653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.5 bits(488) 0.0 104/109(95%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                +VAF+SK SRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGE+VEHLLGDGDVFVMSPGM
Subject   5327  DVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGM  5653

Range 3: 5332 to 5652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.0 bits(487) 0.0 97/107(91%) 0/107(0%) Minus/Plus
Query        2  SILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD  322
                SILQQVQPK+ L*WWFARESG+E SA**ASGGTEIG*EL SLLDTEVQKGCYDRVSC***EMLHIWC+RCH KFEWSGSL*SAVE*DGR CRASSG*W*C+R+EPGD
Subject   5332  SILQQVQPKVCL*WWFARESGLE*SA**ASGGTEIG*EL*SLLDTEVQKGCYDRVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGD  5652

Range 4: 5330 to 5653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.8 bits(482) 0.0 95/108(88%) 0/108(0%) Plus/Minus
Query        1  HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECY  324
                HPRAH+E ITITQKMLDNLSRLIRPHSKASLTIQIY DNA+TRCVAFLIISMKPDRSTL VLLYQAMI+ LIQFQFLPKLIKRF+P+LTRVRTTIID+ SA LA ECY
Subject   5330  HPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKPDRSTLSVLLYQAMIITLIQFQFLPKLIKRFIPTLTRVRTTIIDIPSAVLAVECY  5653

Range 5: 5331 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 96/107(90%) 0/107(0%) Minus/Plus
Query        3  *HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG  323
                *HS+AS AE  SIMVVRTRVR G KRLMSFGRN*NWMR  IIA*YRST+RVLRSGFMLMMRNATHLV*ALS *I*MVRLALECGRIRRERLSSIFWVMVM S**ARG
Subject   5331  *HSTASTAEGMSIMVVRTRVRVGIKRLMSFGRN*NWMRVMIIA*YRSTERVLRSGFMLMMRNATHLV*ALSP*I*MVRLALECGRIRRERLSSIFWVMVMSS**ARG  5651

Range 6: 5455 to 5652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 64/66(97%) 0/66(0%) Plus/Minus
Query        2  IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  199
                IPGLIT TSPSPRRCST SPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ
Subject   5455  IPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  5652

Range 7: 5329 to 5406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 23/26(88%) 0/26(0%) Plus/Minus
Query      248  ALFHP*LACEPPL*TYLRLHLLKNAT  325
                ALF P*LACEPPL*TYLRL+LL NAT
Subject   5329  ALFQP*LACEPPL*TYLRLYLL*NAT  5406

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7

Range 1: 5331 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 95/107(89%) 0/107(0%) Plus/Minus
Query        3  SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RML  323
                SPGS R HHHHPEDARQ LPSYSTAL*SEPDHSNL *QR HQMCSISHHQHETRS*HPFCTSVSSND +SHPISVPPEAHQAL S PDSRANHHYR  FGCTC RML
Subject   5331  SPGSSRRHHHHPEDARQSLPSYSTAL*SEPDHSNLR*QRSHQMCSISHHQHETRS*HPFCTSVSSNDHNSHPISVPPEAHQALYSNPDSRANHHYRHTFGCTCCRML  5651

Range 2: 5327 to 5653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.5 bits(488) 0.0 104/109(95%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                +VAF+SK SRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGE+VEHLLGDGDVFVMSPGM
Subject   5327  DVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGM  5653

Range 3: 5332 to 5652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.0 bits(487) 0.0 97/107(91%) 0/107(0%) Minus/Plus
Query        2  SILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD  322
                SILQQVQPK+ L*WWFARESG+E SA**ASGGTEIG*EL SLLDTEVQKGCYDRVSC***EMLHIWC+RCH KFEWSGSL*SAVE*DGR CRASSG*W*C+R+EPGD
Subject   5332  SILQQVQPKVCL*WWFARESGLE*SA**ASGGTEIG*EL*SLLDTEVQKGCYDRVSC***EMLHIWCERCHRKFEWSGSL*SAVE*DGRDCRASSG*W*CLRDEPGD  5652

Range 4: 5330 to 5653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.8 bits(482) 0.0 95/108(88%) 0/108(0%) Plus/Minus
Query        1  HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECY  324
                HPRAH+E ITITQKMLDNLSRLIRPHSKASLTIQIY DNA+TRCVAFLIISMKPDRSTL VLLYQAMI+ LIQFQFLPKLIKRF+P+LTRVRTTIID+ SA LA ECY
Subject   5330  HPRAHHEDITITQKMLDNLSRLIRPHSKASLTIQIYGDNAHTRCVAFLIISMKPDRSTLSVLLYQAMIITLIQFQFLPKLIKRFIPTLTRVRTTIIDIPSAVLAVECY  5653

Range 5: 5331 to 5651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 96/107(90%) 0/107(0%) Minus/Plus
Query        3  *HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG  323
                *HS+AS AE  SIMVVRTRVR G KRLMSFGRN*NWMR  IIA*YRST+RVLRSGFMLMMRNATHLV*ALS *I*MVRLALECGRIRRERLSSIFWVMVM S**ARG
Subject   5331  *HSTASTAEGMSIMVVRTRVRVGIKRLMSFGRN*NWMRVMIIA*YRSTERVLRSGFMLMMRNATHLV*ALSP*I*MVRLALECGRIRRERLSSIFWVMVMSS**ARG  5651

Range 6: 5455 to 5652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 64/66(97%) 0/66(0%) Plus/Minus
Query        2  IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  199
                IPGLIT TSPSPRRCST SPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ
Subject   5455  IPGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  5652

Range 7: 5329 to 5406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 23/26(88%) 0/26(0%) Plus/Minus
Query      248  ALFHP*LACEPPL*TYLRLHLLKNAT  325
                ALF P*LACEPPL*TYLRL+LL NAT
Subject   5329  ALFQP*LACEPPL*TYLRLYLL*NAT  5406

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 7

Range 1: 1543 to 1866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.1 bits(485) 0.0 95/108(88%) 0/108(0%) Plus/Minus
Query        3  SPGSLRTHHHHPEDARQPLPSYSTAL*SEPDHSNLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPPEAHQALCSIPDSRANHHYRRIFGCTC*RMLL  326
                SPGS     H PEDARQPLPSYSTAL*SEPD S+LL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVP EAHQAL S PDSRANHHYRR FGCTC RMLL
Subject   1543  SPGSXXXXXHLPEDARQPLPSYSTAL*SEPDRSSLL*QRLHQMCSISHHQHETRS*HPFCTSVSSNDRSSHPISVPLEAHQALYSNPDSRANHHYRRNFGCTCCRMLL  1866

Range 2: 1542 to 1868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.4 bits(479) 0.0 94/109(86%) 0/109(0%) Plus/Minus
Query        1  HPRAHYEHITITQKMLDNLSRLIRPHSKASLTIQIYCDNAYTRCVAFLIISMKPDRSTLFVLLYQAMIVALIQFQFLPKLIKRFVPSLTRVRTTIIDVSSAALAEECYF  327
                HPR H     I+QKMLDNLSRLIRPHSKASLT+Q+YCDNAYTRCVAFLIISMKPDRSTL VLLYQAMIVALIQFQFL KLIKRF+P+LTRVRTTIIDV+SAALA ECYF
Subject   1542  HPRGHXXXXXISQKMLDNLSRLIRPHSKASLTVQVYCDNAYTRCVAFLIISMKPDRSTLSVLLYQAMIVALIQFQFLSKLIKRFIPTLTRVRTTIIDVTSAALAVECYF  1868

Range 3: 1542 to 1868 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.1 bits(463) 0.0 100/109(92%) 0/109(0%) Minus/Plus
Query        1  EVAFFSKCSRRYVYNGGSHASQGWNKAXXXXXXXXXXXESYDHCLIQKYKKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDGDVFVMSPGM  327
                EVAF+SKCSR YVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKY+KGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGD     M+PGM
Subject   1542  EVAFYSKCSRSYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEVVEHLLGDXXXXXMTPGM  1868

Range 4: 1544 to 1867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 94/108(87%) 0/108(0%) Minus/Plus
Query        2  SSILQQVQPKIRL*WWFARESGMEQSA**ASGGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKFEWSGSL*SAVE*DGRGCRASSG*W*CVRNEPGD  325
                SSILQQVQPK+RL*WWFARESG+E SA**AS GTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSK E SGSL*SAVE*DGRGCRASSG       +PGD
Subject   1544  SSILQQVQPKLRL*WWFARESGLE*SA**ASRGTEIG*ELRSLLDTEVQKGCYDRVSC***EMLHIWCKRCHSKLERSGSL*SAVE*DGRGCRASSGRXXXXXXDPGD  1867

Range 5: 1543 to 1866 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 93/108(86%) 0/108(0%) Minus/Plus
Query        3  K*HSSASAAEDTSIMVVRTRVRDGTKRLMSFGRN*NWMRATIIA*YRSTKRVLRSGFMLMMRNATHLV*ALSQ*I*MVRLALECGRIRRERLSSIFWVMVMCS**ARG  326
                K*HS+ASAAE TSIMVVRTRVR G KRLMSF RN*NWMRATIIA*YRST+RVLRSGFMLMMRNATHLV*ALSQ* * VRLALECGRIRRERLSSIFW M     * RG
Subject   1543  K*HSTASAAEVTSIMVVRTRVRVGIKRLMSFERN*NWMRATIIA*YRSTERVLRSGFMLMMRNATHLV*ALSQ*T*TVRLALECGRIRRERLSSIFWEMXXXXX*PRG  1866

Range 6: 1670 to 1867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 59/66(89%) 0/66(0%) Plus/Minus
Query        2  IPGLIXXXXXXXXXXXXXXXVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  199
                IPG+      SPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ
Subject   1670  IPGVXXXXXXSPRRCSTTSPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ  1867

Range 7: 1544 to 1621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 23/26(88%) 0/26(0%) Plus/Minus
Query      248  ALFHP*LACEPPL*TYLRLHLLKNAT  325
                ALF P*LACEPPL*T LRLHLL NAT
Subject   1544  ALFQP*LACEPPL*T*LRLHLL*NAT  1621

Nucleotide Sequence (415 letters)

Query ID:ds2016-133_14
Query definition:No definition line
Query length:603
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 7 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
415

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
266.4 1433.0 29% 1.389e-69 83% KU674797.1
265.5 1408.2 29% 2.622e-69 83% KU674796.1
263.2 1353.7 30% 1.283e-68 74% JQ023131.1
263.2 1353.7 30% 1.283e-68 74% NC_016509.1

Alignments

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 7

Range 1: 1580 to 1945 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.4 bits(575) 0.0 118/122(97%) 0/122(0%) Plus/Plus
Query       50  LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK  415
                L DVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEG+V+AVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK
Subject   1580  LWDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGAVVAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK  1945

Range 2: 1565 to 1945 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 111/127(87%) 0/127(0%) Minus/Minus
Query       35  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ  415
                LDVKAQHSLQLPHTNTALERA QKIVA+QNCQLQPAPILI ++QLSRI TSKK*VRKRHVNA RQPPP*NTHI+P NFQR SD GPFNETKN+ LT TPVAGQQPLVTKFWGEKTLPLNIP*P  TQ
Subject   1565  LDVKAQHSLQLPHTNTALERASQKIVAIQNCQLQPAPILIPIIQLSRIFTSKK*VRKRHVNAHRQPPP*NTHIIPYNFQRNSDNGPFNETKNKPLT*TPVAGQQPLVTKFWGEKTLPLNIP*PP*TQ  1945

Range 3: 1578 to 1943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 107/122(88%) 0/122(0%) Plus/Plus
Query       48  G*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS  413
                G GMFKGNVFSPQNFVTSGC*PATGV VR  FFVSLKGP SL+LWKL G ICVFYGGGCLWAFTWRFLTYFLDV+IRESC   ISIGAGC+WQF* ATIFW ALSRAVLVCGS*SECCALTS
Subject   1578  GYGMFKGNVFSPQNFVTSGC*PATGVQVRGLFFVSLKGPLSLFLWKL*GMICVFYGGGCLWAFTWRFLTYFLDVKIRESCIMGISIGAGCSWQF*MATIFWLALSRAVLVCGS*SECCALTS  1943

Range 4: 1579 to 1944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.3 bits(516) 0.0 117/122(96%) 0/122(0%) Minus/Minus
Query       49  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS  414
                LTLKRSIRFNFRTLIQLSKEPA+RLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTA T PSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TS S
Subject   1579  LTLKRSIRFNFRTLIQLSKEPARRLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTATTAPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSHS  1944

Range 5: 1578 to 1892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 87/105(83%) 0/105(0%) Minus/Minus
Query       48  RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLA  362
                RKS+P+DCC SELP AASTNTY  +TALPY HI*KVSEEAPRKRP+AASAIEHAY T *LPE QR R LQRNKK+ SY NSSRGSTTTCDKILG*KNIALEHP+A
Subject   1578  RKSQPEDCCHSELPAAASTNTYPHNTALPYLHI*KVSEEAPRKRPQAASAIEHAYHTL*LPEEQRQRPLQRNKKQTSYLNSSRGSTTTCDKILG*KNIALEHPIA  1892

Range 6: 1579 to 1809 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(306) 0.0 66/77(86%) 0/77(0%) Plus/Plus
Query       49  AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG  279
                A GCSRAMFFHPKILSQVVVDPRLEF *E+ FLFR*R R RC+SGSY V YACSMAEAA GRLRGASSLTF*M* YG
Subject   1579  AMGCSRAMFFHPKILSQVVVDPRLEFR*EVCFLFR*RGRCRCSSGSYKV*YACSMAEAACGRLRGASSLTF*M*RYG  1809

Range 7: 1852 to 1944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 28/31(90%) 0/31(0%) Plus/Plus
Query      322  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  414
                GSSE QQS G LFRELY*CAEVEANAAL*RQ
Subject   1852  GSSEWQQSSGWLFRELY*CAEVEANAAL*RQ  1944

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 7

Range 1: 1515 to 1880 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.5 bits(573) 0.0 118/122(97%) 0/122(0%) Plus/Plus
Query       50  LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK  415
                L DVQGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK
Subject   1515  LWDVQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELYYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK  1880

Range 2: 1513 to 1878 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
254.0 bits(548) 0.0 104/122(85%) 0/122(0%) Plus/Plus
Query       48  G*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS  413
                G GMFKGNVFSPQNF TSGC*PATGV  R   FVSLKGP SLYLWKL GTICVFYGGGC WAFTW FLTYFLDVRIRESC   ISIGAGC+W+F*TATI+WPALSRAV VCGS*SECCALTS
Subject   1513  GYGMFKGNVFSPQNFATSGC*PATGVQERGMSFVSLKGPLSLYLWKL*GTICVFYGGGCPWAFTWHFLTYFLDVRIRESCIMGISIGAGCSWRF*TATIYWPALSRAVSVCGS*SECCALTS  1878

Range 3: 1500 to 1880 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
248.0 bits(535) 0.0 108/127(85%) 0/127(0%) Minus/Minus
Query       35  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ  415
                LDVKAQHSLQLPHT+TALERAGQ IVAVQN QLQPAPILI ++QLSRILTSKK*VRK HVNA  QPPP*NTHIVP NFQRYSD GPFNETK+  L+ TPVAGQQPLV KFWGEKTLPLNIP*P  TQ
Subject   1500  LDVKAQHSLQLPHTDTALERAGQ*IVAVQNRQLQPAPILIPIIQLSRILTSKK*VRKCHVNAHGQPPP*NTHIVPYNFQRYSDNGPFNETKDIPLS*TPVAGQQPLVAKFWGEKTLPLNIP*PPRTQ  1880

Range 4: 1514 to 1879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.9 bits(502) 0.0 115/122(94%) 0/122(0%) Minus/Minus
Query       49  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS  414
                LTLKRSIRFNFRTLIQLSKEPA RLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT L PELQSRVNNHL QNFGVKKHCP*TS S
Subject   1514  LTLKRSIRFNFRTLIQLSKEPANRLLPFRTASCSQHQYLSP*YSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLFPELQSRVNNHLWQNFGVKKHCP*TSHS  1879

Range 5: 1513 to 1827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.8 bits(432) 0.0 87/105(83%) 0/105(0%) Minus/Minus
Query       48  RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLA  362
                RKSRP DCCRSE P AASTNTY  +TALPYPHI*KVSEE PRKRP+AASAIEHAYRT *LPEVQR R LQRNK+  S+ NSSRGSTTTC KILG*KNIALEHP+A
Subject   1513  RKSRPIDCCRSEPPAAASTNTYPHNTALPYPHI*KVSEEVPRKRPRAASAIEHAYRTL*LPEVQR*RPLQRNKRHTSFLNSSRGSTTTCGKILG*KNIALEHPIA  1827

Range 6: 1514 to 1744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 65/77(84%) 0/77(0%) Plus/Plus
Query       49  AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG  279
                A GCSRAMFFHPKIL QVVVDPRLEF  E+  LFR*R R RCTSGSY VRYACSMAEAA GRLRG SSLTF*M*GYG
Subject   1514  AMGCSRAMFFHPKILPQVVVDPRLEFRKEVCLLFR*RGRYRCTSGSYKVRYACSMAEAARGRLRGTSSLTF*M*GYG  1744

Range 7: 1787 to 1879 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 28/31(90%) 0/31(0%) Plus/Plus
Query      322  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  414
                G SERQQS GRLFRELY CAEVEANAAL*RQ
Subject   1787  GGSERQQSIGRLFRELYQCAEVEANAAL*RQ  1879

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7

Range 1: 1439 to 1804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.2 bits(568) 0.0 116/122(95%) 0/122(0%) Plus/Plus
Query       50  LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK  415
                L D+QGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGEL+YGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK
Subject   1439  LWDIQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELFYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK  1804

Range 2: 1424 to 1804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 105/127(83%) 0/127(0%) Minus/Minus
Query       35  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ  415
                LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQP PILI++ QL+R+LTSK+ VRKRHVN  RQPPP*N HIVP NF+RY D  PFNETKN  LT TPVAGQQPLVTKF GEKTLPLNIP*P  TQ
Subject   1424  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPTPILITIKQLTRVLTSKEQVRKRHVNTHRQPPP*NAHIVPYNFKRYGDNCPFNETKNIPLT*TPVAGQQPLVTKFRGEKTLPLNIP*PPRTQ  1804

Range 3: 1422 to 1802 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.8 bits(517) 0.0 102/127(80%) 0/127(0%) Plus/Plus
Query       33  CWVCLG*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS  413
                C V  G G+FKGNVFSP+NFVTSGC*PATGV VR  FFVSLKG  S YL KL GTIC FYGGGCLW FTWRFLT  LDVR R SC   ISIG GC+WQF*TATIFWPALSRAVLVCGS*SECCALTS
Subject   1422  CCVRGGYGIFKGNVFSPRNFVTSGC*PATGVQVRGMFFVSLKGQLSPYLLKL*GTICAFYGGGCLWVFTWRFLTCSLDVRTRVSCFMVISIGVGCSWQF*TATIFWPALSRAVLVCGS*SECCALTS  1802

Range 4: 1438 to 1803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 115/122(94%) 0/122(0%) Minus/Minus
Query       49  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS  414
                LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASC+QHQYLSP* SSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT LLPELQSRVNNHL*QNFGVKKHCP* S S
Subject   1438  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCNQHQYLSP*NSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLLPELQSRVNNHL*QNFGVKKHCP*ISHS  1803

Range 5: 1422 to 1751 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 81/110(74%) 0/110(0%) Minus/Minus
Query       33  RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLAQTHPT  362
                RKSRPKDCCRSELP A +TNTY   TA P PHI*+ SEEAPRK P+AASAIE AYRT *L EV+R   LQRNKK  SY NSSRGSTTTCDKI G*KNIALE+P+A  + T
Subject   1422  RKSRPKDCCRSELPAATNTNTYHHKTAHPCPHI*RASEEAPRKHPQAASAIERAYRTL*LQEVRR*LPLQRNKKHTSYLNSSRGSTTTCDKISG*KNIALEYPIAAPNAT  1751

Range 6: 1438 to 1668 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 59/77(77%) 0/77(0%) Plus/Plus
Query       49  AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG  279
                A G SRAMFFHP+ILSQVVVDPRLEF *E+ FLFR*R   R TS SY VRYA SMAEAA G LRGASSL  *M*G+G
Subject   1438  AMGYSRAMFFHPEILSQVVVDPRLEFR*EVCFLFR*RGSYRRTS*SYKVRYARSMAEAACGCLRGASSLAL*M*GHG  1668

Range 7: 1711 to 1803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 31/31(100%) 0/31(0%) Plus/Plus
Query      322  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  414
                GSSERQQSFGRLFRELY*CAEVEANAAL*RQ
Subject   1711  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  1803

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7

Range 1: 1439 to 1804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.2 bits(568) 0.0 116/122(95%) 0/122(0%) Plus/Plus
Query       50  LRDVQGQCFFTPKFCHKWLLTRDWSSGKRFVFCFVEGSVIAVPLEVIRYDMRVLWRRLPLGVYVALPHLLFRCEDTGELYYGDKYWCWXXXXXXXXXXXXXXSFESCISVRKLKRMLRFNVK  415
                L D+QGQCFFTPKFCHKWLLTRDWSSGKR+VFCFVEG+VIAVPLEVIRYDMRVLWRRLP+GVYVALPHLLFRCEDTGEL+YGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK
Subject   1439  LWDIQGQCFFTPKFCHKWLLTRDWSSGKRYVFCFVEGAVIAVPLEVIRYDMRVLWRRLPVGVYVALPHLLFRCEDTGELFYGDKYWCWLQLAVLNGNNLLAGSFESCISVRKLKRMLRFNVK  1804

Range 2: 1424 to 1804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.8 bits(530) 0.0 105/127(83%) 0/127(0%) Minus/Minus
Query       35  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPAPILISVVQLSRILTSKK*VRKRHVNAQRQPPP*NTHIVPNNFQRYSDYGPFNETKNESLTRTPVAGQQPLVTKFWGEKTLPLNIP*PKHTQ  415
                LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQP PILI++ QL+R+LTSK+ VRKRHVN  RQPPP*N HIVP NF+RY D  PFNETKN  LT TPVAGQQPLVTKF GEKTLPLNIP*P  TQ
Subject   1424  LDVKAQHSLQLPHTNTALERAGQKIVAVQNCQLQPTPILITIKQLTRVLTSKEQVRKRHVNTHRQPPP*NAHIVPYNFKRYGDNCPFNETKNIPLT*TPVAGQQPLVTKFRGEKTLPLNIP*PPRTQ  1804

Range 3: 1422 to 1802 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
239.8 bits(517) 0.0 102/127(80%) 0/127(0%) Plus/Plus
Query       33  CWVCLG*GMFKGNVFSPQNFVTSGC*PATGVLVRDSFFVSLKGP*SLYLWKLLGTICVFYGGGCLWAFTWRFLTYFLDVRIRESCTTEISIGAGCNWQF*TATIFWPALSRAVLVCGS*SECCALTS  413
                C V  G G+FKGNVFSP+NFVTSGC*PATGV VR  FFVSLKG  S YL KL GTIC FYGGGCLW FTWRFLT  LDVR R SC   ISIG GC+WQF*TATIFWPALSRAVLVCGS*SECCALTS
Subject   1422  CCVRGGYGIFKGNVFSPRNFVTSGC*PATGVQVRGMFFVSLKGQLSPYLLKL*GTICAFYGGGCLWVFTWRFLTCSLDVRTRVSCFMVISIGVGCSWQF*TATIFWPALSRAVLVCGS*SECCALTS  1802

Range 4: 1438 to 1803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
235.2 bits(507) 0.0 115/122(94%) 0/122(0%) Minus/Minus
Query       49  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCSQHQYLXXXXXXXXXSHLKSK*GSAT*TPKGSLRHRTRISYLITSRGTAITDPSTKQKTNLLPELQSRVNNHL*QNFGVKKHCP*TSLS  414
                LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASC+QHQYLSP* SSPVSSHLKSK*GSAT*TP GSLRHRTRISYLITSRGTAIT PSTKQKT LLPELQSRVNNHL*QNFGVKKHCP* S S
Subject   1438  LTLKRSIRFNFRTLIQLSKEPAKRLLPFRTASCNQHQYLSP*NSSPVSSHLKSK*GSAT*TPTGSLRHRTRISYLITSRGTAITAPSTKQKTYLLPELQSRVNNHL*QNFGVKKHCP*ISHS  1803

Range 5: 1422 to 1751 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 81/110(74%) 0/110(0%) Minus/Minus
Query       33  RKSRPKDCCRSELPVAASTNTYLRSTALPYPHI*KVSEEAPRKRPKAASAIEHAYRT**LPEVQRLRTLQRNKKRISYQNSSRGSTTTCDKILG*KNIALEHPLAQTHPT  362
                RKSRPKDCCRSELP A +TNTY   TA P PHI*+ SEEAPRK P+AASAIE AYRT *L EV+R   LQRNKK  SY NSSRGSTTTCDKI G*KNIALE+P+A  + T
Subject   1422  RKSRPKDCCRSELPAATNTNTYHHKTAHPCPHI*RASEEAPRKHPQAASAIERAYRTL*LQEVRR*LPLQRNKKHTSYLNSSRGSTTTCDKISG*KNIALEYPIAAPNAT  1751

Range 6: 1438 to 1668 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 59/77(77%) 0/77(0%) Plus/Plus
Query       49  AKGCSRAMFFHPKILSQVVVDPRLEFW*EIRFLFR*RVRNRCTSGSY*VRYACSMAEAAFGRLRGASSLTF*M*GYG  279
                A G SRAMFFHP+ILSQVVVDPRLEF *E+ FLFR*R   R TS SY VRYA SMAEAA G LRGASSL  *M*G+G
Subject   1438  AMGYSRAMFFHPEILSQVVVDPRLEFR*EVCFLFR*RGSYRRTS*SYKVRYARSMAEAACGCLRGASSLAL*M*GHG  1668

Range 7: 1711 to 1803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 31/31(100%) 0/31(0%) Plus/Plus
Query      322  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  414
                GSSERQQSFGRLFRELY*CAEVEANAAL*RQ
Subject   1711  GSSERQQSFGRLFRELY*CAEVEANAAL*RQ  1803

Nucleotide Sequence (312 letters)

Query ID:ds2016-133_14
Query definition:No definition line
Query length:603
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 7 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
32
64
96
128
160
192
224
256
288
312

Descriptions

Alignments

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 8

Range 1: 11832 to 12140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 93/103(90%) 0/103(0%) Minus/Minus
Query        1  RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLRNI  309
                RTNFAKRGL LPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTA LCSGVKMK LSFFL I VSSFN+PE+A+ FQLR I
Subject  11832  RTNFAKRGLYLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTAALCSGVKMKCLSFFLVIGVSSFNDPELAYAFQLRII  12140

Range 2: 11833 to 12141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.0 bits(465) 0.0 92/103(89%) 0/103(0%) Plus/Plus
Query        2  MLRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR  310
                M+RNWK  A SG LKLDT I KKKDK+FILTPEQR AVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEG++SPLLAKFVR
Subject  11833  MMRNWKAYANSGSLKLDTPITKKKDKHFILTPEQRAAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGKYSPLLAKFVR  12141

Range 3: 11834 to 12142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
206.3 bits(444) 0.0 91/103(88%) 0/103(0%) Minus/Minus
Query        3  FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT  311
                + QTSLKED I PLLFYQSL*+TTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*N YPFS*LS YLAL+TL  HT SNYA+
Subject  11834  YAQTSLKEDCICPLLFYQSL*QTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NAYPFS*LSAYLALMTLNWHTPSNYAS  12142

Range 4: 11833 to 12141 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 91/103(88%) 0/103(0%) Minus/Minus
Query        2  SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPITQH  310
                ++KLR*KRT   LFYSISRYS RHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHR PLFRRQNE+LILFLSYRRI*L**P*   RLPIT H
Subject  11833  THKLR*KRTVFALFYSISRYSRRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRCPLFRRQNEMLILFLSYRRI*L**P*IGIRLPITHH  12141

Range 5: 11948 to 12136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 59/63(94%) 0/63(0%) Plus/Plus
Query      117  ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSL  305
                ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCR L*RLIE*KR ++VLF*RSL
Subject  11948  ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRLL*RLIE*KRANTVLF*RSL  12136

Range 6: 11832 to 11924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 25/31(81%) 0/31(0%) Plus/Plus
Query        1  YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD  93
                Y A*LE VC FRVIKARY D+*EKG* FHFD
Subject  11832  YDA*LEGVCQFRVIKARYADN*EKG*AFHFD  11924

Range 7: 11964 to 12137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 56/58(97%) 0/58(0%) Plus/Plus
Query      133  YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVC  306
                YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVV YSD**NRRG IQSSFSEVC
Subject  11964  YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVCYSD**NRRGQIQSSFSEVC  12137

Range 8: 11837 to 11875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 9/13(69%) 0/13(0%) Plus/Plus
Query        6  CVIGRRVLLQGY*  44
                CVIGRR+ +QG+*
Subject  11837  CVIGRRMPIQGH*  11875

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 8

Range 1: 12092 to 12400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
213.2 bits(459) 0.0 91/103(88%) 0/103(0%) Minus/Minus
Query        1  RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLRNI  309
                RTNFAKRGLNLPSSILSVA+ADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCA ASFVLFGRALTA LCSGVK+  LSFFL I VSSFN+PEVA+ FQ RNI
Subject  12092  RTNFAKRGLNLPSSILSVALADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCANASFVLFGRALTAALCSGVKI*CLSFFLVIGVSSFNDPEVAYAFQPRNI  12400

Range 2: 12093 to 12401 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(452) 0.0 91/103(88%) 0/103(0%) Plus/Plus
Query        2  MLRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR  310
                MLR WK  ATSG LKLDT I KKKDK++ILTPEQR AVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSG G+IPLVQVSSA ATDRIEEGRFSPLLAKFVR
Subject  12093  MLRGWKAYATSGSLKLDTPITKKKDKHYILTPEQRAAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGNGSIPLVQVSSARATDRIEEGRFSPLLAKFVR  12401

Range 3: 12094 to 12402 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 90/103(87%) 0/103(0%) Minus/Minus
Query        3  FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT  311
                +VQTSLKED*I PLLFYQSL +TTPALVGYY SQIRHHRSARV*EKHLGSRTTAR LHLYYSAELSPLPSVPASK N YPFS*LS YLAL+TLK HT SN+AT
Subject  12094  YVQTSLKED*ICPLLFYQSLSQTTPALVGYYHSQIRHHRSARV*EKHLGSRTTARMLHLYYSAELSPLPSVPASKYNAYPFS*LSAYLALMTLKSHTPSNHAT  12402

Range 4: 12093 to 12401 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 89/103(86%) 0/103(0%) Minus/Minus
Query        2  SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPITQH  310
                +YKLR*KRTES LFYSISR   RHLH*WD T PRYVIIVRHAFEKNT*VQEQLRE FICTIRQSSHR PLFRRQN +LILFLSYRRI*L**P*S  RLP TQH
Subject  12093  TYKLR*KRTESALFYSISRSRRRHLH*WDTTIPRYVIIVRHAFEKNT*VQEQLRECFICTIRQSSHRCPLFRRQNIMLILFLSYRRI*L**P*SRIRLPTTQH  12401

Range 5: 12208 to 12399 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 57/64(89%) 0/64(0%) Plus/Plus
Query      117  ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY  308
                ELCRIVQMK SRSCS*T*VFFSNACRTMMTYLG V+SH*CRCR   RLIE*KR DSVLF*RSLY
Subject  12208  ELCRIVQMKHSRSCS*T*VFFSNACRTMMTYLGMVVSH*CRCRLRERLIE*KRADSVLF*RSLY  12399

Range 6: 12092 to 12184 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 23/31(74%) 0/31(0%) Plus/Plus
Query        1  YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD  93
                YVA LE VC FRVIKARY D+*EKG*  +FD
Subject  12092  YVAWLEGVCDFRVIKARYADN*EKG*ALYFD  12184

Range 7: 12224 to 12400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 54/59(92%) 0/59(0%) Plus/Plus
Query      133  YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT  309
                YK*S RAVVLEPRCFSQTRAER**RIWE *YPTSAGVV  SD**NRRG IQSSFSEVCT
Subject  12224  YK*SIRAVVLEPRCFSQTRAER**RIWEW*YPTSAGVVCESD**NRRGQIQSSFSEVCT  12400

Range 8: 12094 to 12135 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 10/14(71%) 0/14(0%) Plus/Plus
Query        3  CCVIGRRVLLQGY*  44
                CCV+GRR+ LQG+*
Subject  12094  CCVVGRRMRLQGH*  12135

Grapevine leafroll associated virus 1 helicase (HEL) and RNA dependent RNA polymerase (POL) genes, partial cds; and p7, HSP70 like protein, p55, coat protein (CP), p55 (CPd1), p50 (CPd2), p22, and p24 genes, complete cds

Sequence ID: AF195822.1 Length: 12394 Number of Matches: 8

Range 1: 5583 to 5891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 88/103(85%) 0/103(0%) Minus/Minus
Query        1  RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLRNI  309
                RTNFAKRGLNLPSSIL VAIADDTCTSGI PFPDTSSSFGTRLRKTPRFKNNCAKASFV FG+AL A LCSGVK K LSFFL I +SSFN+P  A+VFQLRNI
Subject   5583  RTNFAKRGLNLPSSILYVAIADDTCTSGI*PFPDTSSSFGTRLRKTPRFKNNCAKASFVAFGKALAAALCSGVKTKCLSFFLVIGISSFNDP*FAYVFQLRNI  5891

Range 2: 5584 to 5892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.6 bits(427) 0.0 85/103(83%) 0/103(0%) Plus/Plus
Query        2  MLRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR  310
                MLRNWKT A  G LKLD  I KKKDK+F+LTPEQR A RALPN+TNEAFAQLFLNLGVFL RVPN++DVSGKG IPLVQVSSA+AT RIEEGRFSPLLAKFVR
Subject   5584  MLRNWKTYANQGSLKLDMPITKKKDKHFVLTPEQRAAARALPNATNEAFAQLFLNLGVFLNRVPNEEDVSGKGYIPLVQVSSAMATYRIEEGRFSPLLAKFVR  5892

Range 3: 5584 to 5892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 76/103(74%) 0/103(0%) Minus/Minus
Query        2  SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPITQH  310
                +Y+LR*KRT+S  FYSI R+S R+LH*WDITFPRYV  VRH  EKN *VQE LRESFI ++RQSS R PLFRRQNE+LILFLSYR I* **P    RLPITQH
Subject   5584  TYELR*KRTKSAFFYSICRHSRRYLH*WDITFPRYVFFVRHTVEKNA*VQE*LRESFIRSVRQSSCRCPLFRRQNEMLILFLSYRHI*F**PLIRIRLPITQH  5892

Range 4: 5585 to 5893 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 73/103(71%) 0/103(0%) Minus/Minus
Query        3  FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT  311
                +V+TSLKED*I  LLFY S *+T PALVGY LSQIR  RSA  *EK LGSR  ARKLH   SA+L PLPSV ASK N YPFS*L  YL L+TL  HTSSNYAT
Subject   5585  YVRTSLKED*ICLLLFYMSP*QTIPALVGYNLSQIRLLRSAHG*EKRLGSRIIARKLHS*RSAKLLPLPSVQASKRNAYPFS*L*AYLVLMTLDSHTSSNYAT  5893

Range 5: 5699 to 5890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 46/64(72%) 0/64(0%) Plus/Plus
Query      117  ELCRIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY  308
                ELCR ++MKLSR+ S*T* FFS  CRT  TYLGKVISH*CR R L R IE*K+ D VLF*RS Y
Subject   5699  ELCRTLRMKLSRNYS*T*AFFSTVCRTKKTYLGKVISH*CRYRLLWRHIE*KKADLVLF*RSSY  5890

Range 6: 5583 to 5675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 23/31(74%) 0/31(0%) Plus/Plus
Query        1  YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD  93
                YVA*LEDVC  RVIK RY  +*EKG* F FD
Subject   5583  YVA*LEDVCESRVIKTRYAYN*EKG*AFRFD  5675

Range 7: 5715 to 5891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 42/59(71%) 0/59(0%) Plus/Plus
Query      133  YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT  309
                Y+*SFRA++LEPR FSQ  AER  RIWER YPTSAG+V Y D *NRR  I SSFSEV T
Subject   5715  YE*SFRAIILEPRRFSQPCAERRRRIWERLYPTSAGIVCYGDI*NRRRQI*SSFSEVRT  5891

Range 8: 5585 to 5626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 9/14(64%) 0/14(0%) Plus/Plus
Query        3  CCVIGRRVLLQGY*  44
                CCVIGRR+ ++G+*
Subject   5585  CCVIGRRMRIKGH*  5626

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7

Range 1: 11742 to 12047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 76/102(75%) 0/102(0%) Plus/Plus
Query        5  LRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR  310
                +RNWK  AT G L+LDT I KKK+K+F LT EQ+ AVR  PNSTNEAFAQLFLNLGVFLKRVP D+D+SG+GNIPLV+VS A +TDRIE+GR+SPLLAKFVR
Subject  11742  MRNWKAYATPGSLQLDTPITKKKNKHFTLTAEQQAAVRTSPNSTNEAFAQLFLNLGVFLKRVPKDEDISGRGNIPLVRVSQAESTDRIEQGRYSPLLAKFVR  12047

Range 2: 11744 to 12046 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 72/101(71%) 0/101(0%) Minus/Minus
Query        7  RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLR  309
                RTNFAKRGL LP SILSV  A DT TSGILP PD SSSFGTR +KTP+FKNNCAKASFVLFG  LTA  CS V +K L FF  I VS+ N+P VA+ FQLR
Subject  11744  RTNFAKRGLYLPCSILSVDSACDTRTSGILPRPDISSSFGTRFKKTPKFKNNCAKASFVLFGDVLTAACCSAVNVKCLFFFFVIGVSNCNDPGVAYAFQLR  12046

Range 3: 11745 to 12047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 56/101(55%) 0/101(0%) Minus/Minus
Query        8  SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPIT  310
                +YKL  KRT  +LFYSI R    H H WDI    Y+ ++ +AF++N *+QEQLR+SFI TIR  S+R  LF  Q E+LILFL YRR+*L* P    RLPIT
Subject  11745  TYKLCQKRTVPSLFYSICRLRL*HTHKWDIASS*YIFVLWYAFQENA*IQEQLRKSFIRTIR*RSYRCLLFSCQREVLILFLCYRRV*L*RPRGRVRLPIT  12047

Range 4: 11740 to 12048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 50/103(49%) 0/103(0%) Minus/Minus
Query        3  FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT  311
                +VQT  KED  +P+LFY S    T A VGY L  I      RV  K L SRT A+KLH YYS    PLP+V  S *+ Y FS LS  L + T    T SNYA+
Subject  11740  YVQTLPKEDCTFPVLFYLSTPLVTHAQVGYCLVLIYLRPLVRVSRKRLNSRTIAQKLHSYYSVTFLPLPAVQLST*SAYSFSLLSACLIVTTQGSRTPSNYAS  12048

Range 5: 11863 to 12045 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 31/61(51%) 0/61(0%) Plus/Plus
Query      126  RIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY  308
                RIV+MKL R+CS* * F  NA +    Y  + ISH C C    R IE* R  +VLF +SLY
Subject  11863  RIVRMKLLRNCS*I*AFS*NAYQRTKIYQDEAISHLCVCHKRSRQIE*NREGTVLFWQSLY  12045

Range 6: 11738 to 11830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 14/31(45%) 0/31(0%) Plus/Plus
Query        1  YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD  93
                Y A*LE V    V+  R+ D+ EK *  H D
Subject  11738  YDA*LEGVRDPWVVTIRHADNKEKE*ALHVD  11830

Range 7: 11870 to 12046 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 31/59(53%) 0/59(0%) Plus/Plus
Query      133  YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT  309
                Y+*SF A+VLE R F +TR +    I  R YPT A V    D *NR G +QSSF +VCT
Subject  11870  YE*SFCAIVLEFRRFLETRTKGRRYIRTRQYPTCACVTSGVDR*NRTGKVQSSFGKVCT  12046

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7

Range 1: 11742 to 12047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 76/102(75%) 0/102(0%) Plus/Plus
Query        5  LRNWKTCATSGLLKLDTAIAKKKDKYFILTPEQRVAVRALPNSTNEAFAQLFLNLGVFLKRVPNDDDVSGKGNIPLVQVSSAIATDRIEEGRFSPLLAKFVR  310
                +RNWK  AT G L+LDT I KKK+K+F LT EQ+ AVR  PNSTNEAFAQLFLNLGVFLKRVP D+D+SG+GNIPLV+VS A +TDRIE+GR+SPLLAKFVR
Subject  11742  MRNWKAYATPGSLQLDTPITKKKNKHFTLTAEQQAAVRTSPNSTNEAFAQLFLNLGVFLKRVPKDEDISGRGNIPLVRVSQAESTDRIEQGRYSPLLAKFVR  12047

Range 2: 11744 to 12046 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 72/101(71%) 0/101(0%) Minus/Minus
Query        7  RTNFAKRGLNLPSSILSVAIADDTCTSGILPFPDTSSSFGTRLRKTPRFKNNCAKASFVLFGRALTATLCSGVKMKYLSFFLAIAVSSFNNPEVAHVFQLR  309
                RTNFAKRGL LP SILSV  A DT TSGILP PD SSSFGTR +KTP+FKNNCAKASFVLFG  LTA  CS V +K L FF  I VS+ N+P VA+ FQLR
Subject  11744  RTNFAKRGLYLPCSILSVDSACDTRTSGILPRPDISSSFGTRFKKTPKFKNNCAKASFVLFGDVLTAACCSAVNVKCLFFFFVIGVSNCNDPGVAYAFQLR  12046

Range 3: 11745 to 12047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 56/101(55%) 0/101(0%) Minus/Minus
Query        8  SYKLR*KRTESTLFYSISRYSGRHLH*WDITFPRYVIIVRHAFEKNT*VQEQLRESFICTIRQSSHRYPLFRRQNEILILFLSYRRI*L**P*SSTRLPIT  310
                +YKL  KRT  +LFYSI R    H H WDI    Y+ ++ +AF++N *+QEQLR+SFI TIR  S+R  LF  Q E+LILFL YRR+*L* P    RLPIT
Subject  11745  TYKLCQKRTVPSLFYSICRLRL*HTHKWDIASS*YIFVLWYAFQENA*IQEQLRKSFIRTIR*RSYRCLLFSCQREVLILFLCYRRV*L*RPRGRVRLPIT  12047

Range 4: 11740 to 12048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 50/103(49%) 0/103(0%) Minus/Minus
Query        3  FVQTSLKED*IYPLLFYQSL*RTTPALVGYYLSQIRHHRSARV*EKHLGSRTTARKLHLYYSAELSPLPSVPASK*NTYPFS*LSPYLALITLK*HTSSNYAT  311
                +VQT  KED  +P+LFY S    T A VGY L  I      RV  K L SRT A+KLH YYS    PLP+V  S *+ Y FS LS  L + T    T SNYA+
Subject  11740  YVQTLPKEDCTFPVLFYLSTPLVTHAQVGYCLVLIYLRPLVRVSRKRLNSRTIAQKLHSYYSVTFLPLPAVQLST*SAYSFSLLSACLIVTTQGSRTPSNYAS  12048

Range 5: 11863 to 12045 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 31/61(51%) 0/61(0%) Plus/Plus
Query      126  RIVQMKLSRSCS*T*VFFSNACRTMMTYLGKVISH*CRCRPL*RLIE*KRVDSVLF*RSLY  308
                RIV+MKL R+CS* * F  NA +    Y  + ISH C C    R IE* R  +VLF +SLY
Subject  11863  RIVRMKLLRNCS*I*AFS*NAYQRTKIYQDEAISHLCVCHKRSRQIE*NREGTVLFWQSLY  12045

Range 6: 11738 to 11830 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 14/31(45%) 0/31(0%) Plus/Plus
Query        1  YVA*LEDVCYFRVIKARYGDS*EKG*VFHFD  93
                Y A*LE V    V+  R+ D+ EK *  H D
Subject  11738  YDA*LEGVRDPWVVTIRHADNKEKE*ALHVD  11830

Range 7: 11870 to 12046 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 31/59(53%) 0/59(0%) Plus/Plus
Query      133  YK*SFRAVVLEPRCFSQTRAER**RIWER*YPTSAGVVRYSD**NRRG*IQSSFSEVCT  309
                Y+*SF A+VLE R F +TR +    I  R YPT A V    D *NR G +QSSF +VCT
Subject  11870  YE*SFCAIVLEFRRFLETRTKGRRYIRTRQYPTCACVTSGVDR*NRTGKVQSSFGKVCT  12046

Nucleotide Sequence (435 letters)

Query ID:ds2016-133_14
Query definition:No definition line
Query length:603
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 7 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
435

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
229.3 1313.8 22% 2.242e-58 91% KU674796.1
226.0 1296.4 22% 2.071e-57 86% KU674797.1
219.6 1197.4 22% 1.747e-55 80% JQ023131.1
219.6 1197.4 22% 1.747e-55 80% NC_016509.1
205.4 1117.3 20% 3.299e-51 80% KT000364.1

Alignments

Grapevine leafroll associated virus 1 isolate WA CH, complete genome

Sequence ID: KU674796.1 Length: 18731 Number of Matches: 7

Range 1: 4294 to 4605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.3 bits(494) 0.0 97/104(93%) 0/104(0%) Plus/Minus
Query       15  WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP  326
                WQPYLHLSLRSTP+TPLRPSISKPCHTR L*YTSMPLSHIRRSLYT*TA*A+VIQE+LISHSSMIDMRLP*GTRSE STNRRICTPSPPRIQTHDL*IQP+L P
Subject   4294  WQPYLHLSLRSTPNTPLRPSISKPCHTRPL*YTSMPLSHIRRSLYT*TA*ARVIQETLISHSSMIDMRLP*GTRSERSTNRRICTPSPPRIQTHDL*IQPSLSP  4605

Range 2: 4302 to 4604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.8 bits(493) 0.0 93/101(92%) 0/101(0%) Plus/Minus
Query       16  GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR  318
                GSPTYTFLCGQRQTRRYAHQF+SPAI A FDTPQCRYPISDAPYIPEPLRR+*YK R*FLIAR**ICGCRKA GLN+QRIAVYVPHLLH SRHTIFKFSPR
Subject   4302  GSPTYTFLCGQRQTRRYAHQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRE*YKKR*FLIAR**ICGCRKAHGLNVQRIAVYVPHLLHVSRHTIFKFSPR  4604

Range 3: 4301 to 4606 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.4 bits(479) 0.0 94/102(92%) 0/102(0%) Plus/Minus
Query       14  MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA  319
                +AALLTPFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASNTR ADFS*LDDRYAAAVRH V*TFNESPYMYPISST PDTRSLNSA A
Subject   4301  LAALLTPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNTRNADFS*LDDRYAAAVRHTV*TFNESPYMYPISSTYPDTRSLNSALA  4606

Range 4: 4299 to 4610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 96/104(92%) 0/104(0%) Minus/Plus
Query       10  LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL  321
                +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSA LVLLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKGVSRAA L
Subject   4299  IARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAFLVLLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGVSRAASL  4610

Range 5: 4300 to 4605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.3 bits(468) 0.0 95/102(93%) 0/102(0%) Minus/Plus
Query       15  *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP  320
                *RGLNLKIVCLD+WRRWGTYTAIR* FRP ALRQPHIYHRAMRNQRFLYY RLSGSGI*GASDMG*RH*GVSK A MAGL N*WA*RRVWR*PQRKV*VGLP
Subject   4300  *RGLNLKIVCLDTWRRWGTYTAIR*TFRPCALRQPHIYHRAMRNQRFLYYSRLSGSGI*GASDMG*RH*GVSKGASMAGLRN*WA*RRVWR*PQRKV*VGLP  4605

Range 6: 4448 to 4603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 49/52(94%) 0/52(0%) Minus/Plus
Query       17  TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*GC  172
                T A*AVQVYRERRIWDSGIEVYQR RVWQGFEIDGRSGV GVDRKERCK*GC
Subject   4448  TRA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GC  4603

Range 7: 4295 to 4399 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 32/35(91%) 0/35(0%) Minus/Plus
Query      221  GSSVG*I*RSCVWIRGGDGVHIRRFVECSDRVPYG  325
                G S G*I*RSCVWIRGGDGVHIRRFVE SDRVPYG
Subject   4295  GDSEG*I*RSCVWIRGGDGVHIRRFVERSDRVPYG  4399

Grapevine leafroll associated virus 1 isolate WA PN, complete genome

Sequence ID: KU674797.1 Length: 18946 Number of Matches: 7

Range 1: 4367 to 4669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.0 bits(487) 0.0 92/101(91%) 0/101(0%) Plus/Minus
Query       16  GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR  318
                GSPTYTFLCGQRQTRRYAHQFQSPAI A FD PQCRYPISDAPYIPEPLRRK*Y+NR*FLIAR**ICGCRK   LN+QRIAVYVPHLLH SRHTIFKFSPR
Subject   4367  GSPTYTFLCGQRQTRRYAHQFQSPAILAPFDIPQCRYPISDAPYIPEPLRRK*YENR*FLIAR**ICGCRKTHSLNVQRIAVYVPHLLHVSRHTIFKFSPR  4669

Range 2: 4359 to 4670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
224.2 bits(483) 0.0 96/104(92%) 0/104(0%) Plus/Minus
Query       15  WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP  326
                WQPYLHLSLRSTP+TPLRPSISKPCHTR L*YTSMPLSHIRRSLYT*TA*AQVI+ESLISHSSMIDMRLP* T+SE STNRRICTPSPPRIQTHDL*IQP+L P
Subject   4359  WQPYLHLSLRSTPNTPLRPSISKPCHTRPL*YTSMPLSHIRRSLYT*TA*AQVIRESLISHSSMIDMRLP*NTQSERSTNRRICTPSPPRIQTHDL*IQPSL*P  4670

Range 3: 4366 to 4671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 94/102(92%) 0/102(0%) Plus/Minus
Query       14  MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA  319
                +AALLTPFFAVNA+HAATPINFKALPY+PPLI+LNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAV+H V*TFNESPYMYPISST PDTRSLNSA A
Subject   4366  LAALLTPFFAVNAKHAATPINFKALPYSPPLIYLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVKHTV*TFNESPYMYPISSTYPDTRSLNSALA  4671

Range 4: 4364 to 4675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 96/104(92%) 0/104(0%) Minus/Plus
Query       10  LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL  321
                +A AEFKDRVSG+VEEMGYIYGDSLNVQT C TAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALR IKGG YGRALKLMGVAACLALTAKKGVSRAA L
Subject   4364  IARAEFKDRVSGYVEEMGYIYGDSLNVQTVCFTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRYIKGGEYGRALKLMGVAACLALTAKKGVSRAASL  4675

Range 5: 4365 to 4670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.8 bits(458) 0.0 93/102(91%) 0/102(0%) Minus/Plus
Query       15  *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP  320
                *RGLNLKIVCLD+WRRWGTYTAIR* FR   LRQPHIYHRAMRNQRF YYLRLSGSGI*GASDMG*RH*G+SK A MAGL*N*WA*RRVWR*PQRKV*VGLP
Subject   4365  *RGLNLKIVCLDTWRRWGTYTAIR*TFRLCVLRQPHIYHRAMRNQRFSYYLRLSGSGI*GASDMG*RH*GISKGASMAGL*N*WA*RRVWR*PQRKV*VGLP  4670

Range 6: 4513 to 4668 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 50/52(96%) 0/52(0%) Minus/Plus
Query       17  TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*GC  172
                TCA*AVQVYRERRIWDSGIEVYQR RVWQGFEIDGRSGV GVDRKERCK*GC
Subject   4513  TCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDGRSGVFGVDRKERCK*GC  4668

Range 7: 4360 to 4464 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 30/35(86%) 0/35(0%) Minus/Plus
Query      221  GSSVG*I*RSCVWIRGGDGVHIRRFVECSDRVPYG  325
                G S G*I*RSCVWIRGGDGVHIRRFVE SD V YG
Subject   4360  GHSEG*I*RSCVWIRGGDGVHIRRFVERSDCVFYG  4464

Grapevine leafroll associated virus 1 isolate 1050, complete genome

Sequence ID: JQ023131.1 Length: 18659 Number of Matches: 7

Range 1: 4223 to 4534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.6 bits(473) 0.0 95/104(91%) 0/104(0%) Minus/Plus
Query       10  LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL  321
                +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKG SRAA L
Subject   4223  VARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASL  4534

Range 2: 4225 to 4530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 92/102(90%) 0/102(0%) Plus/Minus
Query       14  MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA  319
                +AALL PFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAAAVRH V*TFNESP MYPISST PDTRSLNSA A
Subject   4225  LAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALA  4530

Range 3: 4226 to 4528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 84/101(83%) 0/101(0%) Plus/Minus
Query       16  GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR  318
                G PT TFLC QRQTR YAHQF+SPAI ASFDTPQCRYP+SDAPYIPEPLRR+*YKNR FLIAR**ICG RKA GLN+QR+AV VPHL H SRH IFKFSPR
Subject   4226  GCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPR  4528

Range 4: 4218 to 4529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 88/104(85%) 0/104(0%) Plus/Minus
Query       15  WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP  326
                W PYLHLSL+STP+T LRPSISKPCHTRLL*YTSMPLS IRRSLYT*TA*A+VI ES ISHSSMIDMR P*GTRSE ST+RR CTPS PRIQT DL*IQP+L P
Subject   4218  WLPYLHLSLQSTPNTRLRPSISKPCHTRLL*YTSMPLSRIRRSLYT*TA*ARVI*ESPISHSSMIDMRRP*GTRSERSTSRRKCTPSLPRIQTRDL*IQPSLPP  4529

Range 5: 4224 to 4529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 85/102(83%) 0/102(0%) Minus/Plus
Query       15  *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP  320
                *RGLNLKI CLD+W+RWGT+TA R* FRP ALR PHIYHRAMRN+RFLYY RLSGSGI*GASD G*RH*GVSKEA MAGL N*WA* RVWR* QRKV VG P
Subject   4224  *RGLNLKIACLDTWKRWGTFTATR*TFRPCALRPPHIYHRAMRNRRFLYYSRLSGSGI*GASDTG*RH*GVSKEASMAGLRN*WA*PRVWR*LQRKVQVGQP  4529

Range 6: 4372 to 4524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 46/51(90%) 0/51(0%) Minus/Plus
Query       20  TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*G  172
                T A*AVQVYRERRI DSGIEVYQRRRVWQGFEIDGRS V GVD KERCK*G
Subject   4372  TRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*G  4524

Range 7: 4219 to 4323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 28/35(80%) 0/35(0%) Minus/Plus
Query      221  GSSVG*I*RSCVWIRGGDGVHIRRFVECSDRVPYG  325
                G S G*I*RS VWIRG DGVH+RR VE SDRVPYG
Subject   4219  GGSEG*I*RSRVWIRGRDGVHLRRLVERSDRVPYG  4323

Grapevine leafroll associated virus 1, complete genome

Sequence ID: NC_016509.1 Length: 18659 Number of Matches: 7

Range 1: 4223 to 4534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.6 bits(473) 0.0 95/104(91%) 0/104(0%) Minus/Plus
Query       10  LAWAEFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL  321
                +A AEFKDRVSG+VEEMGYIYGDSLNVQT CLTAAAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KLMGVAACLALTAKKG SRAA L
Subject   4223  VARAEFKDRVSGYVEEMGYIYGDSLNVQTVCLTAAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLMGVAACLALTAKKGASRAASL  4534

Range 2: 4225 to 4530 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 92/102(90%) 0/102(0%) Plus/Minus
Query       14  MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNSAHA  319
                +AALL PFFAVNA+HAATPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAAAVRH V*TFNESP MYPISST PDTRSLNSA A
Subject   4225  LAALLAPFFAVNAKHAATPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAAVRHTV*TFNESP*MYPISSTYPDTRSLNSALA  4530

Range 3: 4226 to 4528 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 84/101(83%) 0/101(0%) Plus/Minus
Query       16  GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKFSPR  318
                G PT TFLC QRQTR YAHQF+SPAI ASFDTPQCRYP+SDAPYIPEPLRR+*YKNR FLIAR**ICG RKA GLN+QR+AV VPHL H SRH IFKFSPR
Subject   4226  GCPTCTFLCSQRQTRGYAHQFRSPAILASFDTPQCRYPVSDAPYIPEPLRRE*YKNRRFLIAR**ICGGRKAHGLNVQRVAVNVPHLFHVSRHAIFKFSPR  4528

Range 4: 4218 to 4529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 88/104(85%) 0/104(0%) Plus/Minus
Query       15  WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP  326
                W PYLHLSL+STP+T LRPSISKPCHTRLL*YTSMPLS IRRSLYT*TA*A+VI ES ISHSSMIDMR P*GTRSE ST+RR CTPS PRIQT DL*IQP+L P
Subject   4218  WLPYLHLSLQSTPNTRLRPSISKPCHTRLL*YTSMPLSRIRRSLYT*TA*ARVI*ESPISHSSMIDMRRP*GTRSERSTSRRKCTPSLPRIQTRDL*IQPSLPP  4529

Range 5: 4224 to 4529 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 85/102(83%) 0/102(0%) Minus/Plus
Query       15  *RGLNLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP  320
                *RGLNLKI CLD+W+RWGT+TA R* FRP ALR PHIYHRAMRN+RFLYY RLSGSGI*GASD G*RH*GVSKEA MAGL N*WA* RVWR* QRKV VG P
Subject   4224  *RGLNLKIACLDTWKRWGTFTATR*TFRPCALRPPHIYHRAMRNRRFLYYSRLSGSGI*GASDTG*RH*GVSKEASMAGLRN*WA*PRVWR*LQRKVQVGQP  4529

Range 6: 4372 to 4524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 46/51(90%) 0/51(0%) Minus/Plus
Query       20  TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*G  172
                T A*AVQVYRERRI DSGIEVYQRRRVWQGFEIDGRS V GVD KERCK*G
Subject   4372  TRA*AVQVYRERRIRDSGIEVYQRRRVWQGFEIDGRSRVFGVDCKERCK*G  4524

Range 7: 4219 to 4323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 28/35(80%) 0/35(0%) Minus/Plus
Query      221  GSSVG*I*RSCVWIRGGDGVHIRRFVECSDRVPYG  325
                G S G*I*RS VWIRG DGVH+RR VE SDRVPYG
Subject   4219  GGSEG*I*RSRVWIRGRDGVHLRRLVERSDRVPYG  4323

UNVERIFIED: Grapevine leafroll associated virus 1 isolate TI_15 genomic sequence

Sequence ID: KT000364.1 Length: 5279 Number of Matches: 7

Range 1: 510 to 809 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
205.4 bits(442) 0.0 88/100(88%) 0/100(0%) Minus/Plus
Query       10  EFKDRVSGFVEEMGYIYGDSLNVQTACLTAAAYLSSSYEKSAILVLLAPKRFRYIGSVGYGIAALRCIKGGAYGRALKLMGVAACLALTAKKGVSRAAIL  309
                EFKDRVSG+VEEMGYIYGDSLNVQT CL  AAYLSSSYEKSAIL+LLAPKRFRYIGSVGYGIAALRCIKGG YGRA KL+GV  CLALTAKKG SRAA L
Subject    510  EFKDRVSGYVEEMGYIYGDSLNVQTVCLXXAAYLSSSYEKSAILILLAPKRFRYIGSVGYGIAALRCIKGGEYGRASKLIGVXXCLALTAKKGASRAASL  809

Range 2: 509 to 805 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.1 bits(439) 0.0 86/99(87%) 0/99(0%) Plus/Minus
Query       14  MAALLTPFFAVNARHAATPINFKALPYAPPLIHLNAAIPYPTLPIYLNRLGASNTRIADFS*LDDRYAAAVRHAV*TFNESPYMYPISSTNPDTRSLNS  310
                +AALL PFFAVNA+H  TPINF+ALPY+PPLIHLNAAIPYPTLPIYLNRLGASN RIADFS*LDDRYAA  RH V*TFNESP MYPISST PDTRSLNS
Subject    509  LAALLAPFFAVNAKHXXTPINFEALPYSPPLIHLNAAIPYPTLPIYLNRLGASNIRIADFS*LDDRYAAXXRHTV*TFNESP*MYPISSTYPDTRSLNS  805

Range 3: 510 to 803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 79/98(81%) 0/98(0%) Plus/Minus
Query       16  GSPTYTFLCGQRQTRRYAHQFQSPAIRASFDTPQCRYPISDAPYIPEPLRRK*YKNR*FLIAR**ICGCRKARGLNIQRIAVYVPHLLHESRHTIFKF  309
                GSPT TFLCGQRQT   A+QF+SPAI A FDTPQCRYPISDAPYIPEPLRRK*YKNR FLIAR *ICG  KA  LN+QRIAV V HL H SRHTIFKF
Subject    510  GSPTCTFLCGQRQTXXXAYQFRSPAILAPFDTPQCRYPISDAPYIPEPLRRK*YKNRRFLIARR*ICGXXKAHSLNVQRIAVNVSHLFHVSRHTIFKF  803

Range 4: 493 to 804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.6 bits(390) 0.0 83/104(80%) 0/104(0%) Plus/Minus
Query       15  WQPYLHLSLRSTPDTPLRPSISKPCHTRLL*YTSMPLSHIRRSLYT*TA*AQVIQESLISHSSMIDMRLP*GTRSEHSTNRRICTPSPPRIQTHDL*IQPTLDP  326
                WQPYLHLSLRSTP+T  R SISKPCHTR L*YTSMPLSHIRRSLYT*TA*AQVI ES ISHSS IDMR   GT+SE STNRR C PS PRIQTHDL*I     P
Subject    493  WQPYLHLSLRSTPNTXXRLSISKPCHTRPL*YTSMPLSHIRRSLYT*TA*AQVI*ESQISHSSTIDMRXXXGTQSERSTNRRKCIPSLPRIQTHDL*IXXXXXP  804

Range 5: 511 to 804 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 78/98(80%) 0/98(0%) Minus/Plus
Query       15  NLKIVCLDSWRRWGTYTAIR*MFRPRALRQPHIYHRAMRNQRFLYYLRLSGSGI*GASDMG*RH*GVSKEARMAGL*N*WA*RRVWR*PQRKV*VGLP  308
                NLKIVCLD+W+RW T+TAIR* FR  A   PHIY RAMRN RFLYYLRLSGSGI*GASDMG*RH*GVSK A MAGL N* A   VWR*PQRKV VGLP
Subject    511  NLKIVCLDTWKRWDTFTAIR*TFRLCAXXXPHIYRRAMRNLRFLYYLRLSGSGI*GASDMG*RH*GVSKGASMAGLRN**AXXXVWR*PQRKVQVGLP  804

Range 6: 647 to 802 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 47/52(90%) 0/52(0%) Minus/Plus
Query       17  TCA*AVQVYRERRIWDSGIEVYQRRRVWQGFEIDGRSGVSGVDRKERCK*GC  172
                TCA*AVQVYRERRIWDSGIEVYQR RVWQGFEID R  V GVDRKERCK*GC
Subject    647  TCA*AVQVYRERRIWDSGIEVYQRGRVWQGFEIDRRXXVFGVDRKERCK*GC  802

Range 7: 512 to 592 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 22/27(81%) 0/27(0%) Minus/Plus
Query      227  I*RSCVWIRGGDGVHIRRFVECSDRVP  307
                I*RSCVWIRG DG+H+RRFVE SD VP
Subject    512  I*RSCVWIRGRDGIHLRRFVERSDCVP  592