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Queries

Nucleotide Sequence (117 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
117

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5

Range 1: 6550 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 36/38(95%) 0/38(0%) Plus/Minus
Query        2  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  115
                N MN+NWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*
Subject   6550  NAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  6663

Range 2: 6550 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 38/38(100%) 0/38(0%) Minus/Plus
Query        2  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  115
                LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV
Subject   6550  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  6663

Range 3: 6549 to 6659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 36/37(97%) 0/37(0%) Minus/Plus
Query        6  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCRS*  116
                LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSC S*
Subject   6549  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCS*  6659

Range 4: 6548 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 37/39(95%) 0/39(0%) Plus/Minus
Query        1  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  117
                E YE+QLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR
Subject   6548  ERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  6664

Range 5: 6549 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 19/19(100%) 0/19(0%) Plus/Minus
Query       60  VDKALTKLFIIITPCQTLK  116
                VDKALTKLFIIITPCQTLK
Subject   6549  VDKALTKLFIIITPCQTLK  6605

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 4

Range 1: 806 to 919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 35/38(92%) 0/38(0%) Plus/Minus
Query        2  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  115
                N +N+NWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*
Subject    806  NAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  919

Range 2: 806 to 919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 36/38(95%) 0/38(0%) Minus/Plus
Query        2  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  115
                LS+WHGVIIMNNLVKALSTFEFVG+YSVLRFPVVVHSV
Subject    806  LSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSV  919

Range 3: 804 to 920 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 34/39(87%) 0/39(0%) Plus/Minus
Query        1  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  117
                E  E+QLEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LR
Subject    804  ERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLR  920

Range 4: 805 to 912 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 33/36(92%) 0/36(0%) Minus/Plus
Query        9  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCRS  116
                LK LAWCDYYE*LS*SFVYV*VCG L*RAQISSC S
Subject    805  LKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCS  912

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 4

Range 1: 6550 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 34/38(89%) 0/38(0%) Plus/Minus
Query        2  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  115
                N MN+NWKSEHAINTHKLKRRQSFN*VIHNN  MPNT*
Subject   6550  NAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*  6663

Range 2: 6550 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 36/38(95%) 0/38(0%) Minus/Plus
Query        2  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  115
                LSVWH  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV
Subject   6550  LSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  6663

Range 3: 6548 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 35/39(90%) 0/39(0%) Plus/Minus
Query        1  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  117
                E YE+QLEI*ARYKHPQTQT*TKL*LSYS**S++AKHLR
Subject   6548  ERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLR  6664

Range 4: 6549 to 6659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 34/37(92%) 0/37(0%) Minus/Plus
Query        6  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCRS*  116
                LKCLA  DYYE*LS*SFVYV*VCGCL*RAQISSC S*
Subject   6549  LKCLALLDYYE*LS*SFVYV*VCGCL*RAQISSCCS*  6659

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1

Sequence ID: AB277788.1 Length: 2876 Number of Matches: 4

Range 1: 806 to 919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 33/38(87%) 0/38(0%) Minus/Plus
Query        2  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  115
                LSVWHGV IMNNLVKALS FEFVGV+ VL+FPVVVHSV
Subject    806  LSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSV  919

Range 2: 806 to 919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 25/38(66%) 0/38(0%) Plus/Minus
Query        2  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  115
                NT+N+NWK ++  + +K KRRQSF+*VIHN HTMPNT*
Subject    806  NTVNNNWKFKYTKHANKFKRRQSFD*VIHNTHTMPNT*  919

Range 3: 804 to 920 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 28/39(72%) 0/39(0%) Plus/Minus
Query        1  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  117
                EH E+QLEI*      Q QT TKL*LSYS* SHHAKHLR
Subject    804  EHCEQQLEI*VHKTRQQIQTQTKL*LSYS*YSHHAKHLR  920

Range 4: 805 to 918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 25/38(66%) 0/38(0%) Minus/Plus
Query        3  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCRS*C  116
                LKCLAWC+YYE*LS SFV V*+C  +    ISSC S C
Subject    805  LKCLAWCEYYE*LSQSFVCV*ICWRVLCT*ISSCCSQC  918

Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome

Sequence ID: KR054734.1 Length: 8753 Number of Matches: 4

Range 1: 6550 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 33/38(87%) 0/38(0%) Minus/Plus
Query        2  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  115
                LSVWHGV IMNNLVKALS FEFVGV+ VL+FPVVVHSV
Subject   6550  LSVWHGVSIMNNLVKALSAFEFVGVFRVLKFPVVVHSV  6663

Range 2: 6550 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 26/38(68%) 0/38(0%) Plus/Minus
Query        2  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  115
                NT+N+NWK ++  +T+K KRRQSF+*VIHN HTMPNT*
Subject   6550  NTVNNNWKFKYTKHTNKFKRRQSFD*VIHNTHTMPNT*  6663

Range 3: 6548 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 29/39(74%) 0/39(0%) Plus/Minus
Query        1  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  117
                EH E+QLEI*    H Q QT TKL*LSYS* SHHAKHLR
Subject   6548  EHCEQQLEI*VHETHQQIQTQTKL*LSYS*YSHHAKHLR  6664

Range 4: 6549 to 6662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 26/38(68%) 0/38(0%) Minus/Plus
Query        3  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCRS*C  116
                LKCLAWC+YYE*LS SFV V*+C C+    ISSC S C
Subject   6549  LKCLAWCEYYE*LSQSFVCV*ICWCVSCT*ISSCCSQC  6662

Nucleotide Sequence (199 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Alignments

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7

Range 1: 3238 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.2 bits(332) 0.0 63/66(95%) 0/66(0%) Minus/Plus
Query        1  SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  198
                SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS+PTIRKQLGEN
Subject   3238  SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSNPTIRKQLGEN  3435

Range 2: 3237 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.1 bits(309) 0.0 61/66(92%) 0/66(0%) Plus/Minus
Query        2  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD  199
                FSPSCFR+VG ERA STGDSLSTNDLIPAFKA PSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD
Subject   3237  FSPSCFRIVGFERAGSTGDSLSTNDLIPAFKARPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD  3434

Range 3: 3238 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 50/66(76%) 0/66(0%) Plus/Minus
Query        1  IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  198
                IF+KLLPY W  KS IN *FTFH+RPYS LQS ++ A+KK N*VPKAVTITRHRKSVEVFNF++S*
Subject   3238  IFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS*TICAKKKTN*VPKAVTITRHRKSVEVFNFKVS*  3435

Range 4: 3239 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 50/65(77%) 0/65(0%) Plus/Minus
Query        3  FLQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL  197
                F QVASV LG KEL+Q VIHFP+TTLF PSK    C*EE+QLSAKSS+HHQAQEKC*SLQF++QL
Subject   3239  FHQVASV*LGLKELDQPVIHFPQTTLFPPSKLDHLC*EENQLSAKSSYHHQAQEKC*SLQFQSQL  3433

Range 5: 3239 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 50/65(77%) 0/65(0%) Minus/Plus
Query        3  QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTDWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK  197
                QL  KLKTSTLFLCLVMVTAFGTQL FF A    L*R+E*GR WKVNH+LIQLF+ Q YGSNL K
Subject   3239  QLTLKLKTSTLFLCLVMVTAFGTQLVFFLAQMV*L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVK  3433

Range 6: 3327 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 26/36(72%) 0/36(0%) Minus/Plus
Query        2  HRRIGFEGRNKVVRGK*ITS*FSSFEPNHTEATWRK  109
                HR   FEG NKVV GK*IT * SSF+PN+TEATW K
Subject   3327  HRWSSFEGGNKVVCGK*ITG*SSSFKPNYTEATW*K  3434

Range 7: 3237 to 3278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/14(86%) 0/14(0%) Minus/Plus
Query      158  IS*FRN*RLQHFSC  199
                IS*  N*RLQHFSC
Subject   3237  IS*L*N*RLQHFSC  3278

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7

Range 1: 3238 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.8 bits(331) 0.0 63/66(95%) 0/66(0%) Minus/Plus
Query        1  SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  198
                SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS PTIRKQLGEN
Subject   3238  SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSGPTIRKQLGEN  3435

Range 2: 3238 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 63/66(95%) 0/66(0%) Plus/Minus
Query        1  IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  198
                IF+KLLPYGWARKS INW*FTFHERPYSCLQSQ+VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*
Subject   3238  IFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  3435

Range 3: 3239 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.3 bits(313) 0.0 63/65(97%) 0/65(0%) Minus/Plus
Query        3  QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTDWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK  197
                QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT WL*RQE*GRSWKVNHQLIQLFRAQPYGSNL K
Subject   3239  QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVK  3433

Range 4: 3237 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.5 bits(310) 0.0 62/66(94%) 0/66(0%) Plus/Minus
Query        2  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD  199
                FSPSCFRMVG ERA STGDSLSTNDLIPAFKA PSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD
Subject   3237  FSPSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD  3434

Range 5: 3239 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.8 bits(301) 0.0 60/65(92%) 0/65(0%) Plus/Minus
Query        3  FLQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL  197
                F QVASVWLG KEL+QLVIHFPRTTLFLPSKP RRC*EESQLSAKSS+HHQAQEKC*SLQFRNQL
Subject   3239  FHQVASVWLGPKELDQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSYHHQAQEKC*SLQFRNQL  3433

Range 6: 3324 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 33/37(89%) 0/37(0%) Minus/Plus
Query        2  QHRRIGFEGRNKVVRGK*ITS*FSSFEPNHTEATWRK  112
                QHRR GFEGRNKVVRGK*ITS* SSF PNHTEATW K
Subject   3324  QHRRFGFEGRNKVVRGK*ITS*SSSFGPNHTEATW*K  3434

Range 7: 3237 to 3278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/14(100%) 0/14(0%) Minus/Plus
Query      158  IS*FRN*RLQHFSC  199
                IS*FRN*RLQHFSC
Subject   3237  IS*FRN*RLQHFSC  3278

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 4

Range 1: 3238 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.1 bits(290) 0.0 55/66(83%) 0/66(0%) Minus/Plus
Query        1  SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  198
                SAD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESES VDS  SSP I +QLGEN
Subject   3238  SADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESLVDSTFSSPIISRQLGEN  3435

Range 2: 3237 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(252) 0.0 49/66(74%) 0/66(0%) Plus/Minus
Query        2  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD  199
                FSPSC  M+GLE+ EST DSLSTN+ +PAFKA+PSVL + PTECQKQ PSPGT KVLKSSIS SA+
Subject   3237  FSPSCLEMIGLEKVESTNDSLSTNERMPAFKASPSVLSKNPTECQKQLPSPGTEKVLKSSIS*SAE  3434

Range 3: 3238 to 3399 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 25/54(46%) 0/54(0%) Plus/Minus
Query       37  KS*INW*FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  198
                K *I+ *FT +E  Y+CLQ   + A+ + N VP+A+T+  H K VE+ N  IS*
Subject   3238  KG*IHQ*FTLNE*TYACLQG*PICAK*EPNRVPEAITVAWH*KGVEIINIIIS*  3399

Range 4: 3239 to 3400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 22/54(41%) 0/54(0%) Plus/Minus
Query       36  KELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL  197
                K LN  +IH  R  + LPS+    C*  +Q SA+S++   A ++C*+ Q+ NQL
Subject   3239  KRLNPPMIHSQRMNVCLPSRLAHLC*VRTQQSARSNYRRLALKRC*NHQYHNQL  3400

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 4

Range 1: 3241 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.4 bits(282) 0.0 53/65(82%) 0/65(0%) Minus/Plus
Query        1  ADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  195
                AD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESE  V  +LS+PTI KQLGEN
Subject   3241  ADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESECLVSPSLSAPTIHKQLGEN  3435

Range 2: 3240 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.4 bits(227) 0.0 49/65(75%) 0/65(0%) Plus/Minus
Query        2  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSA  196
                FSPSC  MVG ER   T  SLST D IPAFKA PSVL +KPTECQKQ PSPGT KVLKSSIS SA
Subject   3240  FSPSCL*MVGAERLGLTRHSLSTKDRIPAFKARPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SA  3434

Range 3: 3242 to 3430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 25/63(40%) 0/63(0%) Plus/Minus
Query        6  LQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQ  194
                L V   WL  + L+ L IH P+   + P +   +C* +++L+AK+++HHQAQ + *S Q+ NQ
Subject   3242  LPVVCEWLELRGLDLLGIHSPQKIEYQPLRQDHQC*VKNRLNAKNNYHHQAQRRY*SHQYHNQ  3430

Range 4: 3241 to 3378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 22/46(48%) 0/46(0%) Plus/Minus
Query       58  FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS  195
                FT H+R  + L  +++ AE K +*+PK +TITRHR+ +EV N  IS
Subject   3241  FTLHKRSNTSL*GKTISAE*KTD*MPKTITITRHREGIEVINIIIS  3378

Grapevine rupestris stem pitting associated virus isolate SK30, complete genome

Sequence ID: KX274277.1 Length: 8724 Number of Matches: 4

Range 1: 3241 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.1 bits(279) 0.0 53/65(82%) 0/65(0%) Minus/Plus
Query        1  ADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  195
                AD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESE  V   LS+PTI KQLGEN
Subject   3241  ADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESECLVSPNLSAPTIHKQLGEN  3435

Range 2: 3240 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.6 bits(223) 0.0 48/65(74%) 0/65(0%) Plus/Minus
Query        2  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKANPSVLRRKPTECQKQSPSPGTGKVLKSSISKSA  196
                FSP+C  MVG ER   T  SLST D IPAFKA PSVL +KPTECQKQ PSPGT KVLKSSIS SA
Subject   3240  FSPNCL*MVGAERFGLTRHSLSTKDRIPAFKARPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SA  3434

Range 3: 3242 to 3430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 23/63(37%) 0/63(0%) Plus/Minus
Query        6  LQVASVWLGSKELNQLVIHFPRTTLFLPSKPIRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQ  194
                L +   WL  + L+ L IH P+   + P +   +C* +++L+AK+++HHQAQ + *+ Q+ NQ
Subject   3242  LPIVCEWLELRGLDLLGIHSPQKIEYQPLRQDHQC*VKNRLNAKNNYHHQAQRRY*NHQYHNQ  3430

Range 4: 3241 to 3378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 21/46(46%) 0/46(0%) Plus/Minus
Query       58  FTFHERPYSCLQSQSVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS  195
                FT H+R  + L  +++ AE K +*+PK +TITRHR+ +E+ N  IS
Subject   3241  FTLHKRSNTSL*GKTISAE*KTD*MPKTITITRHREGIEIINIIIS  3378

Nucleotide Sequence (230 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
23
46
69
92
115
138
161
184
207
230

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 1133 to 1360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 76/76(100%) 0/76(0%) Minus/Plus
Query        3  PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  230
                PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF
Subject   1133  PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  1360

Range 2: 1134 to 1361 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.6 bits(379) 0.0 72/76(95%) 0/76(0%) Plus/Minus
Query        2  *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM  229
                *NRNYA+ LNQLPPCQSK AHPQHPTQMA+L*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM
Subject   1134  *NRNYAQPLNQLPPCQSKSAHPQHPTQMASL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM  1361

Range 3: 1135 to 1362 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 76/76(100%) 0/76(0%) Plus/Minus
Query        1  LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y  228
                LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y
Subject   1135  LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y  1362

Range 4: 1133 to 1360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.9 bits(371) 0.0 72/76(95%) 0/76(0%) Plus/Minus
Query        3  EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW  230
                EIGIMR  *INCLLAKAN HTLNIQLKWR CNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW
Subject   1133  EIGIMRSR*INCLLAKANQHTLNIQLKWRACNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW  1360

Range 5: 1135 to 1326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 62/64(97%) 0/64(0%) Minus/Plus
Query       37  ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG  228
                ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYR AI*VGC*GCA+LLWQGG
Subject   1135  ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRLAI*VGC*GCADLLWQGG  1326

Range 6: 1134 to 1310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 58/59(98%) 0/59(0%) Minus/Plus
Query       53  HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F  229
                HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQ RHLSWMLRVC*F
Subject   1134  HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQARHLSWMLRVC*F  1310

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 6877 to 7104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 76/76(100%) 0/76(0%) Minus/Plus
Query        3  PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  230
                PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF
Subject   6877  PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  7104

Range 2: 6878 to 7105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 73/76(96%) 0/76(0%) Plus/Minus
Query        2  *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM  229
                *N+NYA+ LNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM
Subject   6878  *NQNYAQPLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM  7105

Range 3: 6879 to 7106 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 76/76(100%) 0/76(0%) Plus/Minus
Query        1  LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y  228
                LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y
Subject   6879  LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y  7106

Range 4: 6877 to 7104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.8 bits(373) 0.0 73/76(96%) 0/76(0%) Plus/Minus
Query        3  EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW  230
                EI IMR  *INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW
Subject   6877  EIRIMRSR*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW  7104

Range 5: 6879 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.5 bits(320) 0.0 64/64(100%) 0/64(0%) Minus/Plus
Query       37  ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG  228
                ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG
Subject   6879  ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG  7070

Range 6: 6878 to 7054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 59/59(100%) 0/59(0%) Minus/Plus
Query       53  HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F  229
                HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F
Subject   6878  HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F  7054

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 6877 to 7104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 72/76(95%) 0/76(0%) Minus/Plus
Query        3  PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  230
                PYQNISVPREAHFIKSKTCRFG+NTCKYLLSFGF++HSDRSDEVITGSPFELDVEGVLICFGKEAV+LAAAHNSDF
Subject   6877  PYQNISVPREAHFIKSKTCRFGKNTCKYLLSFGFDVHSDRSDEVITGSPFELDVEGVLICFGKEAVNLAAAHNSDF  7104

Range 2: 6879 to 7106 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 72/76(95%) 0/76(0%) Plus/Minus
Query        1  LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y  228
                LKSELCAAAK TASLPKQISTPSTSNSNGEPVITSSDLSLC  KPKDRRYLHVF PNLQVFDFMK*ASLGTLIF*Y
Subject   6879  LKSELCAAAKLTASLPKQISTPSTSNSNGEPVITSSDLSLCTSKPKDRRYLHVFLPNLQVFDFMK*ASLGTLIF*Y  7106

Range 3: 6877 to 7104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 68/76(89%) 0/76(0%) Plus/Minus
Query        3  EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW  230
                EI IMR C +NCLLAKAN*HTLNIQLKW TCNHFIRPVTM IKTKG KVLTCIFAK AGL*LYEVSLPWNTDILIW
Subject   6877  EI*IMRSCQVNCLLAKAN*HTLNIQLKW*TCNHFIRPVTMHIKTKG*KVLTCIFAKPAGL*LYEVSLPWNTDILIW  7104

Range 4: 6878 to 7105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 65/76(86%) 0/76(0%) Plus/Minus
Query        2  *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM  229
                *N NYA+L + LPPCQSKLAHPQHPTQM NL*SLHQTCHYA+ NQR EGTYMYF Q CRSLTL*SEPPLEH*YFDM
Subject   6878  *NLNYAQLPS*LPPCQSKLAHPQHPTQMVNL*SLHQTCHYAHQNQRIEGTYMYFCQTCRSLTL*SEPPLEH*YFDM  7105

Range 5: 6879 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 59/64(92%) 0/64(0%) Minus/Plus
Query       37  ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLWF*FA**QV**SDYRFAI*VGC*GCANLLWQGG  228
                ISKYQCSKGGSLHKVKDLQ+W+KYM*VPS+LWF* A**QV**SDYRF I*VGC*GCANLLWQGG
Subject   6879  ISKYQCSKGGSLHKVKDLQVWQKYM*VPSILWF*CA**QV**SDYRFTI*VGC*GCANLLWQGG  7070

Range 6: 6878 to 7054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 55/59(93%) 0/59(0%) Minus/Plus
Query       53  HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*F  229
                HIKISVFQGRLTS*SQRPA LAKIHVSTF PLVL+CIVTGLMK*LQV HLSWMLRVC*F
Subject   6878  HIKISVFQGRLTS*SQRPAGLAKIHVSTFYPLVLMCIVTGLMK*LQVHHLSWMLRVC*F  7054

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 7

Range 1: 6877 to 7104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.7 bits(364) 0.0 66/76(87%) 0/76(0%) Minus/Plus
Query        3  PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  230
                PYQN+S+PREAHFIKSKTCRFGENTCKYLLSFGF + SDRSD V+ GSPFELDVEGVLICFGKEAVDLA +HNSDF
Subject   6877  PYQNVSIPREAHFIKSKTCRFGENTCKYLLSFGFKVCSDRSDSVVIGSPFELDVEGVLICFGKEAVDLAVSHNSDF  7104

Range 2: 6879 to 7106 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 61/76(80%) 0/76(0%) Plus/Minus
Query        1  LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*Y  228
                LKSELC  A+STAS PKQISTPSTSNSNG+P+ T SDLSL  LKPKD+RYL VFSPNLQVFDFMK ASLG L F*Y
Subject   6879  LKSELCETARSTASFPKQISTPSTSNSNGDPITTLSDLSLQTLKPKDKRYLQVFSPNLQVFDFMKCASLGMLTF*Y  7106

Range 3: 6877 to 7104 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 41/76(54%) 0/76(0%) Plus/Minus
Query        3  EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILIW  230
                EI I+R   I+CL +KA+*HTL+I LKW   N  IRP+T   + K QK+L  + +K AG *LYE+ LP N DILIW
Subject   6877  EIRIVRNRQIHCLFSKAD*HTLDI*LKW*PYNDTIRPITANFEAKRQKILASVLSKPAGF*LYEMCLPRNADILIW  7104

Range 4: 6878 to 7105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 38/76(50%) 0/76(0%) Plus/Minus
Query        2  *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*YFDM  229
                *N+N A+  + LP  QS+LAHP+H TQM  L*  + T H   *+Q+T+ T     Q CR LTL*+ PP E *+FDM
Subject   6878  *NQNCAKPPDPLPLFQSRLAHPRHLTQMVTL*RHYPTYHCKL*SQKTKDTCKCSLQTCRFLTL*NVPPSEC*HFDM  7105

Range 5: 6879 to 6974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 18/32(56%) 0/32(0%) Minus/Plus
Query      133  ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLW  228
                ISK Q S+GG+ HKVK+LQ+WR+++ V  V W
Subject   6879  ISKCQHSEGGTFHKVKNLQVWREHLQVSFVFW  6974

Range 6: 7011 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 14/20(70%) 0/20(0%) Minus/Plus
Query       37  YRFAI*VGC*GCANLLWQGG  96
                YR  I*V C GCANLLW+ G
Subject   7011  YRVTI*VRCRGCANLLWKRG  7070

Range 7: 6878 to 7051 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 29/58(50%) 0/58(0%) Minus/Plus
Query       56  HIKISVFQGRLTS*SQRPADLAKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*  229
                HIK+S F+GR  S*SQ+PA L +   S FC L     V G +  L   HLS M RVC*
Subject   6878  HIKMSAFRGRHIS*SQKPAGLERTLASIFCLLASKFAVIGRIVSL*GHHLS*MSRVC*  7051

Grapevine rupestris stem pitting associated virus isolate VF1, partial genome

Sequence ID: KT948710.1 Length: 8716 Number of Matches: 6

Range 1: 6878 to 7105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 66/76(87%) 0/76(0%) Minus/Plus
Query        3  PYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDF  230
                PYQNISVPREAHFIK+KTCRFG NTCKYL SFGF++HSDR D V+ GSPFELDVEGVLICFGKEAVDLA AHNSDF
Subject   6878  PYQNISVPREAHFIKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDF  7105

Range 2: 6886 to 7107 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 52/74(70%) 0/74(0%) Plus/Minus
Query        1  LKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF  222
                LKSELCA A+STAS PKQ+ TPSTS+SNG+P+ T+S LSL   KPKD RYL V +PNLQV  FMK ASLGTL+F
Subject   6886  LKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVFMKCASLGTLMF  7107

Range 3: 6881 to 7105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 37/75(49%) 0/75(0%) Plus/Minus
Query        3  EIGIMRGC*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFAKSAGL*LYEVSLPWNTDILI  227
                E+ I+R C*I  LL+KAN ++LNIQ KWR  N+ +  +TM I+ K  +VL  +  K A   LYEV LPWN D+L+
Subject   6881  EVRIVRNC*IYSLLSKANENSLNIQFKWRPYNNCVHSITMNIEAKRLEVLAGVSTKPASFGLYEVCLPWNADVLV  7105

Range 4: 6891 to 7106 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 35/72(49%) 0/72(0%) Plus/Minus
Query        2  *NRNYARLLNQLPPCQSKLAHPQHPTQMANL*SLHQTCHYAN*NQRTEGTYMYFRQICRSLTL*SEPPLEH*  217
                *++N A+LL+  PP QSK   PQHP QMA L* L    HY + +Q+  GT     Q C+  +L*S PPLE *
Subject   6891  *SQNCAQLLDLQPPFQSK*ELPQHPVQMATL*QLRPLYHYEHRSQKIGGTCRC*HQTCKFWSL*SVPPLER*  7106

Range 5: 6880 to 6975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 14/32(44%) 0/32(0%) Minus/Plus
Query      133  ISKYQCSKGGSLHKVKDLQIWRKYM*VPSVLW  228
                + ++Q SKGG+LHK ++LQ+W  ++ VP + W
Subject   6880  LPEHQRSKGGTLHKDQNLQVWC*HLQVPPIFW  6975

Range 6: 7006 to 7071 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 15/22(68%) 0/22(0%) Minus/Plus
Query       37  SDYRFAI*VGC*GCANLLWQGG  102
                S YR AI* GC*G ++LLW+GG
Subject   7006  SCYRVAI*TGC*GSSHLLWKGG  7071

Nucleotide Sequence (187 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
19
38
57
76
95
114
133
152
171
187

Descriptions

Alignments

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 60/62(97%) 0/62(0%) Plus/Plus
Query        2  KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST  187
                KKEGWDVV FEVFLRKVTGLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST
Subject   4288  KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST  4473

Range 2: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 56/62(90%) 0/62(0%) Plus/Plus
Query        1  KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH  186
                KEGGLGCR L*SL *ESYRPKGWSLRDL**S A+P WLHRSMSSC+SQ*RFHLSCW*SLSKH
Subject   4287  KEGGLGCRYL*SLS*ESYRPKGWSLRDL**SPAIPPWLHRSMSSCHSQ*RFHLSCW*SLSKH  4472

Range 3: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 57/62(92%) 0/62(0%) Minus/Minus
Query        2  CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL  187
                CALTRITSKRDESVTAN+KKT*IDVTR E L+FIKDHAMTSL*ACNFPK+DFKGNDIPALLL
Subject   4288  CALTRITSKRDESVTANDKKT*IDVTRGE*LDFIKDHAMTSL*ACNFPKKDFKGNDIPALLL  4473

Range 4: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 58/62(94%) 0/62(0%) Minus/Minus
Query        1  VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF  186
                VL*QGSPAREMKASLR+TRRHRSM*PG NS TSSKITQ*PAFRPVTFLRKTSK TTSQPSFF
Subject   4287  VL*QGSPAREMKASLRMTRRHRSM*PGGNSWTSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF  4472

Range 5: 4349 to 4471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 38/41(93%) 0/41(0%) Minus/Minus
Query       63  CFDKDHQQER*KRHCE*QEDIDRCNQEGTAELHQRSRNDQP  185
                CFDKDHQQER*KRHCE*QEDIDRCNQ G A LHQRSRNDQP
Subject   4349  CFDKDHQQER*KRHCE*QEDIDRCNQGGIAGLHQRSRNDQP  4471

Range 6: 4289 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 37/41(90%) 0/41(0%) Plus/Plus
Query        3  RRRAGMSLPLKSSLGKLQA*RLVIA*SLMKFSCSFLVTSIY  125
                RRRAGMSLPLKS LGKLQA*RLVIA*SLMK S S LVTSIY
Subject   4289  RRRAGMSLPLKSFLGKLQA*RLVIA*SLMKSSYSPLVTSIY  4411

Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome

Sequence ID: KR528585.1 Length: 8595 Number of Matches: 6

Range 1: 4270 to 4455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 60/62(97%) 0/62(0%) Plus/Plus
Query        2  KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST  187
                KKEGWDVV FEVFLRKVTGLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST
Subject   4270  KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST  4455

Range 2: 4269 to 4454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 56/62(90%) 0/62(0%) Plus/Plus
Query        1  KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH  186
                KEGGLGC  L*S  *ESYRPKGWSLRDL**SSA+P WLHRSMSSCYSQ*RFHLSCW*SLSKH
Subject   4269  KEGGLGCCHL*SFS*ESYRPKGWSLRDL**SSAIPPWLHRSMSSCYSQ*RFHLSCW*SLSKH  4454

Range 3: 4269 to 4454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 60/62(97%) 0/62(0%) Minus/Minus
Query        1  VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF  186
                VL*QGSPAREMKASLRITRRHRSM*PG NS*TSSKITQ*PAFRPVTFLRKTSK TTSQPSFF
Subject   4269  VL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF  4454

Range 4: 4270 to 4455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.4 bits(276) 0.0 56/62(90%) 0/62(0%) Minus/Minus
Query        2  CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL  187
                CALTRITSKRDESVTANNKKT*IDVTR E LNFIKDHAMTSL*ACNFPK++FKG++IPALLL
Subject   4270  CALTRITSKRDESVTANNKKT*IDVTRGE*LNFIKDHAMTSL*ACNFPKKNFKGDNIPALLL  4455

Range 5: 4331 to 4453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 39/41(95%) 0/41(0%) Minus/Minus
Query       63  CFDKDHQQER*KRHCE*QEDIDRCNQEGTAELHQRSRNDQP  185
                CFDKDHQQER*KRHCE*QEDIDRCNQ G AELHQRSRNDQP
Subject   4331  CFDKDHQQER*KRHCE*QEDIDRCNQGGIAELHQRSRNDQP  4453

Range 6: 4271 to 4393 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 35/41(85%) 0/41(0%) Plus/Plus
Query        3  RRRAGMSLPLKSSLGKLQA*RLVIA*SLMKFSCSFLVTSIY  125
                RRRAGM  PLK  LGKLQA*RLVIA*SLMKFS S LVTSIY
Subject   4271  RRRAGMLSPLKFFLGKLQA*RLVIA*SLMKFSYSPLVTSIY  4393

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 60/62(97%) 0/62(0%) Plus/Plus
Query        2  KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST  187
                KKEGWDVV FEVFLRKVTGLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST
Subject   4288  KKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST  4473

Range 2: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.0 bits(297) 0.0 58/62(94%) 0/62(0%) Plus/Plus
Query        1  KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH  186
                KEGGLGC  L*SLP*ESYRPKGWSLRDL**SSA+PSWLHRSMSSCY Q*RFHLSCW*SLSKH
Subject   4287  KEGGLGCCYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYPQ*RFHLSCW*SLSKH  4472

Range 3: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 58/62(94%) 0/62(0%) Minus/Minus
Query        2  CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL  187
                CALTRITSKRDESVTA+NKKT*IDVTR+E LNFIKDHAMTSL*ACNFPKEDFKGN+IPALLL
Subject   4288  CALTRITSKRDESVTADNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNNIPALLL  4473

Range 4: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 60/62(97%) 0/62(0%) Minus/Minus
Query        1  VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF  186
                VL*QGSPAREMKASLRITRRHRSM*PG NS*TSSKITQ*PAFRPVTFLRKTSK TTSQPSFF
Subject   4287  VL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFF  4472

Range 5: 4349 to 4471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 39/41(95%) 0/41(0%) Minus/Minus
Query       63  CFDKDHQQER*KRHCE*QEDIDRCNQEGTAELHQRSRNDQP  185
                CFDKDHQQER*KRHC *QEDIDRCNQEG AELHQRSRNDQP
Subject   4349  CFDKDHQQER*KRHCG*QEDIDRCNQEGIAELHQRSRNDQP  4471

Range 6: 4289 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 38/41(93%) 0/41(0%) Plus/Plus
Query        3  RRRAGMSLPLKSSLGKLQA*RLVIA*SLMKFSCSFLVTSIY  125
                RRRAGM LPLKSSLGKLQA*RLVIA*SLMKFS S LVTSIY
Subject   4289  RRRAGMLLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  4411

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 4

Range 1: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 59/62(95%) 0/62(0%) Plus/Plus
Query        2  KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST  187
                KKEGWDVV FEVFLRKV+GLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST
Subject   4288  KKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST  4473

Range 2: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 47/62(76%) 0/62(0%) Minus/Minus
Query        1  VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF  186
                VL  GSPA EMKASLR+T +HRS+ PG N+*TSSKITQ PAF+P TFLRKTSK TTS PSFF
Subject   4287  VLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQWPAFKPETFLRKTSKVTTSHPSFF  4472

Range 3: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 30/62(48%) 0/62(0%) Minus/Minus
Query        2  CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL  187
                CAL  +T K +ES+T  +K+T*ID++R +QLN I+++ M SL   NF KE+ K + IP  LL
Subject   4288  CALAWVTGK*NESITTYDKQT*IDISRGKQLNLIENYTMASLQTRNFSKENLKSHYIPPFLL  4473

Range 4: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 26/62(42%) 0/62(0%) Plus/Plus
Query        1  KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH  186
                KEG +GC   *  P*+S+  +GW L +  * S V  W++RSM +C++ * FH +C * + +H
Subject   4287  KEGRVGCSDF*GFP*KSFWFEGWPLCNFR*GSVVSPWIYRSMFACHT**CFHFTCR*PMPEH  4472

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 4

Range 1: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 59/62(95%) 0/62(0%) Plus/Plus
Query        2  KKEGWDVVAFEVFLRKVTGLKAGHCVIFDEVQLFLPGYIDLCLLVIRSDAFISLAGDPCQST  187
                KKEGWDVV FEVFLRKV+GLKAGHCVIFDEVQLF PGYIDLCLLVIRSDAFISLAGDPCQST
Subject   4288  KKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQST  4473

Range 2: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 47/62(76%) 0/62(0%) Minus/Minus
Query        1  VL*QGSPAREMKASLRITRRHRSM*PGRNS*TSSKITQ*PAFRPVTFLRKTSKATTSQPSFF  186
                VL  GSPA EMKASLR+T +HRS+ PG N+*TSSKITQ PAF+P TFLRKTSK TTS PSFF
Subject   4287  VLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQWPAFKPETFLRKTSKVTTSHPSFF  4472

Range 3: 4288 to 4473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 31/62(50%) 0/62(0%) Minus/Minus
Query        2  CALTRITSKRDESVTANNKKT*IDVTRKEQLNFIKDHAMTSL*ACNFPKEDFKGNDIPALLL  187
                CAL  IT K +ES+T  +K+T*ID++R +QLN I+++ M SL   NF KE+ K + IP  LL
Subject   4288  CALAWITGK*NESITTYDKQT*IDISRGKQLNLIENYTMASLQTRNFSKENLKSHYIPPFLL  4473

Range 4: 4287 to 4472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 27/62(44%) 0/62(0%) Plus/Plus
Query        1  KEGGLGCRCL*SLP*ESYRPKGWSLRDL**SSAVPSWLHRSMSSCYSQ*RFHLSCW*SLSKH  186
                KEG +GC   *  P*+S+  +GW L +  * S V  W++RSM +C++ * FH +C *S+ +H
Subject   4287  KEGRVGCSDF*GFP*KSFWFEGWPLCNFR*GSVVSPWIYRSMFACHT**CFHFTCR*SMPEH  4472

Nucleotide Sequence (399 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
40
80
120
160
200
240
280
320
360
399

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 10

Range 1: 215 to 580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
244.8 bits(528) 0.0 103/122(84%) 0/122(0%) Minus/Plus
Query        2  LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  367
                L    F+G+   L        +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL
Subject    215  LQVMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL  580

Range 2: 278 to 580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.3 bits(505) 0.0 97/101(96%) 0/101(0%) Plus/Minus
Query        2  ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN  304
                ELGFLKD FFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*E +QHIRHCV+QKGTGFTRKSHYSKRSKLGSKMN
Subject    278  ELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ECKQHIRHCVKQKGTGFTRKSHYSKRSKLGSKMN  580

Range 3: 283 to 579 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 97/99(98%) 0/99(0%) Plus/Minus
Query        3  SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                SWGFLKIPSLNK HPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLK VNNIFAIVLNKKVLASPVNLIIAKDPSLDPR
Subject    283  SWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  579

Range 4: 286 to 579 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 93/98(95%) 0/98(0%) Minus/Plus
Query        3  WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ETPT  296
                WIQAWIFCYNEIYG*SQYLFV HNGEYVV+ LKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWM FV*RR+L*ETPT
Subject    286  WIQAWIFCYNEIYG*SQYLFV*HNGEYVVYILKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPT  579

Range 5: 279 to 581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.1 bits(474) 0.0 98/101(97%) 0/101(0%) Plus/Minus
Query        1  *VGVS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE  303
                *VGVS*R LL*TN+IHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLR *TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE
Subject    279  *VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRM*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE  581

Range 6: 324 to 581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
191.7 bits(412) 0.0 82/86(95%) 0/86(0%) Minus/Plus
Query        1  RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPNS  258
                RVKPVPFC TQWRICC  S*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKK SLRNPNS
Subject    324  RVKPVPFCLTQWRICCLHS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNS  581

Range 7: 824 to 919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 29/32(91%) 0/32(0%) Plus/Minus
Query      302  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNH  397
                N +N+NWKSEHAINTHKLKRRQSFN*VIHNNH
Subject    824  NAVNNNWKSEHAINTHKLKRRQSFN*VIHNNH  919

Range 8: 824 to 919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 31/32(97%) 0/32(0%) Minus/Plus
Query      302  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  397
                VIIMNNLVKALSTFEFVG+YSVLRFPVVVHSV
Subject    824  VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSV  919

Range 9: 822 to 920 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 29/33(88%) 0/33(0%) Plus/Minus
Query      301  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  399
                E  E+QLEI*ARYK+PQTQT*TKL*LSYS**SH
Subject    822  ERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SH  920

Range 10: 823 to 897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 24/25(96%) 0/25(0%) Minus/Plus
Query      324  CDYYE*LS*SFVYV*VCGCL*RAQI  398
                CDYYE*LS*SFVYV*VCG L*RAQI
Subject    823  CDYYE*LS*SFVYV*VCGYL*RAQI  897

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 10

Range 1: 5959 to 6324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
244.8 bits(528) 0.0 103/122(84%) 0/122(0%) Minus/Plus
Query        2  LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  367
                L    F+G+   L        +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL
Subject   5959  LQVMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL  6324

Range 2: 6022 to 6324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.6 bits(497) 0.0 97/101(96%) 0/101(0%) Plus/Minus
Query        2  ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN  304
                ELGFLKD FFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*L PCQFVP*E EQHI HCVEQKGTGFTRKSHYSKRSKLGSKMN
Subject   6022  ELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LRPCQFVP*ECEQHICHCVEQKGTGFTRKSHYSKRSKLGSKMN  6324

Range 3: 6027 to 6323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
227.4 bits(490) 0.0 97/99(98%) 0/99(0%) Plus/Minus
Query        3  SWGFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                SWGFLKIPSLNK HPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLK VNNIFAIVLNKKVLASPVNLIIAKDPSLDPR
Subject   6027  SWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  6323

Range 4: 6030 to 6323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.5 bits(477) 0.0 93/98(95%) 0/98(0%) Minus/Plus
Query        3  WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ETPT  296
                WIQAWIFCYNEIYG*SQYLFVQHNG+YVVH LKVRTDRV VNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWM FV*RR+L*ETPT
Subject   6030  WIQAWIFCYNEIYG*SQYLFVQHNGKYVVHILKVRTDRV*VNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPT  6323

Range 5: 6023 to 6325 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 96/101(95%) 0/101(0%) Plus/Minus
Query        1  *VGVS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDE  303
                *VGVS*R LL*TN+IHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLT+TLSVRTLR *TTY PLC*TKRYWLHP*ISL*QKIQAWIQDE
Subject   6023  *VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTQTLSVRTLRM*TTYLPLC*TKRYWLHP*ISL*QKIQAWIQDE  6325

Range 6: 6068 to 6325 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.8 bits(410) 0.0 82/86(95%) 0/86(0%) Minus/Plus
Query        1  RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPNS  258
                RVKPVPFCSTQW+ICCS S*GTN*QG SQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKK SLRNPNS
Subject   6068  RVKPVPFCSTQWQICCSHS*GTN*QGLSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNS  6325

Range 7: 6568 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 30/32(94%) 0/32(0%) Plus/Minus
Query      302  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNNH  397
                N MN+NWKSEHAINTHKLKRRQSFN*VIHNNH
Subject   6568  NAMNNNWKSEHAINTHKLKRRQSFN*VIHNNH  6663

Range 8: 6568 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 32/32(100%) 0/32(0%) Minus/Plus
Query      302  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  397
                VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV
Subject   6568  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  6663

Range 9: 6566 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 31/33(94%) 0/33(0%) Plus/Minus
Query      301  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  399
                E YE+QLEI*ARYKHPQTQT*TKL*LSYS**SH
Subject   6566  ERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SH  6664

Range 10: 6567 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 25/25(100%) 0/25(0%) Minus/Plus
Query      324  CDYYE*LS*SFVYV*VCGCL*RAQI  398
                CDYYE*LS*SFVYV*VCGCL*RAQI
Subject   6567  CDYYE*LS*SFVYV*VCGCL*RAQI  6641

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 10

Range 1: 5959 to 6324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
244.4 bits(527) 0.0 103/122(84%) 0/122(0%) Minus/Plus
Query        2  LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  367
                L    F+G+   L        +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL
Subject   5959  LQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL  6324

Range 2: 6027 to 6317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 90/97(93%) 0/97(0%) Plus/Minus
Query        9  GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                GFLKIPSLNK HPQNVGFVTNCTLALRQIIFR PSCSVLSLNLL AH+SSPA AIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLI+AKDPS DPR
Subject   6027  GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPSFDPR  6317

Range 3: 6022 to 6324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.6 bits(401) 0.0 78/101(77%) 0/101(0%) Plus/Minus
Query        2  ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN  304
                +L FLKD FF+QTPSTKC VCD+L+ S KANHI E FM S KP*SAV AH+IARK N*LGPCQFVP*E +QHI HCVEQKGTGFTRKSHY KR KL SKM+
Subject   6022  QLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LGPCQFVP*EGKQHICHCVEQKGTGFTRKSHYGKRPKL*SKMD  6324

Range 4: 6030 to 6317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 75/96(78%) 0/96(0%) Minus/Plus
Query        9  WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ET  296
                WI+AW+FC+NEIYG*SQYLFVQHNG+YVV+ LKVRTDRVRVNC CGR*+VR QQIKA*+* *R P+YDLP* *  I HKP+ILWM FV RR+L*ET
Subject   6030  WIKAWVFCHNEIYG*SQYLFVQHNGKYVVYLLKVRTDRVRVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ET  6317

Range 5: 6026 to 6316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 78/97(80%) 0/97(0%) Plus/Minus
Query       10  VS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQD  300
                VS*R LL*TN+IHKM GL*+I  * *GKSY G LH Q *ALICC RT HRPQ QLTRTLSVRTLR+*TTY PLC*TKRYWLHP*ISL QK QA IQD
Subject   6026  VS*RSLL*TNTIHKM*GL*RIVL*P*GKSYSGNLHAQF*ALICCLRTYHRPQTQLTRTLSVRTLRR*TTYLPLC*TKRYWLHP*ISLWQKTQALIQD  6316

Range 6: 6068 to 6316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.9 bits(323) 0.0 67/83(81%) 0/83(0%) Minus/Plus
Query       10  RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRN  258
                RVKPVPFCSTQW+ICC  S*GTN*QGPSQL LRAM CA TAD*GL+L+MK S*I*FAL+L+ N SQT HFVDGVC KK SLRN
Subject   6068  RVKPVPFCSTQWQICCLPS*GTN*QGPSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRN  6316

Range 7: 6571 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 29/31(94%) 0/31(0%) Plus/Minus
Query      302  NTMNDNWKSEHAINTHKLKRRQSFN*VIHNN  394
                N MN+NWKSEHAINTHKLKRRQSFN*VIHNN
Subject   6571  NAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  6663

Range 8: 6571 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 31/31(100%) 0/31(0%) Minus/Plus
Query      302  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  394
                IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV
Subject   6571  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  6663

Range 9: 6566 to 6664 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 30/33(91%) 0/33(0%) Plus/Minus
Query      301  EHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  399
                E YE+QLEI*ARYKHPQTQT*TKL*LSYS**S+
Subject   6566  ERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SN  6664

Range 10: 6570 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 24/24(100%) 0/24(0%) Minus/Plus
Query      324  DYYE*LS*SFVYV*VCGCL*RAQI  395
                DYYE*LS*SFVYV*VCGCL*RAQI
Subject   6570  DYYE*LS*SFVYV*VCGCL*RAQI  6641

Rupestris stem pitting associated virus 1 RNA dependent RNA polymerase gene, partial cds

Sequence ID: AY731821.1 Length: 436 Number of Matches: 6

Range 1: 74 to 436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
242.5 bits(523) 0.0 102/121(84%) 0/121(0%) Minus/Plus
Query        5  LSTFEFVGVYSVLRFPVVVHSVHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQ  367
                L    F+G+   L        +HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQ
Subject     74  LQIMRFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQ  436

Range 2: 142 to 432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 90/97(93%) 0/97(0%) Plus/Minus
Query        9  GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                GFLKIPSLNK HPQNVGFVTNCTLALRQIIFR PSCSVLSLNLL AH+SSPA AIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLI+AKDPS DPR
Subject    142  GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIMAKDPSFDPR  432

Range 3: 137 to 436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 78/100(78%) 0/100(0%) Plus/Minus
Query        5  LGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN  304
                L FLKD FF+QTPSTKC VCD+L+ S KANHI E FM S KP*SAV AH+IARK N*LGPCQFVP*E +QHI HCVEQKGT FTRKSHY KRSKL SKM+
Subject    137  LRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKCN*LGPCQFVP*EGKQHICHCVEQKGTSFTRKSHYGKRSKL*SKMD  436

Range 4: 145 to 432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.6 bits(377) 0.0 75/96(78%) 0/96(0%) Minus/Plus
Query        9  WIQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMEFV*RRNL*ET  296
                WI+AWIFC+NEIYG*S YLFVQHNG+YVV+ LKVRTDRVRVNC CGR*+VR QQIKA*+* *R P+YDLP* *  I HKP+ILWM FV RR+L*ET
Subject    145  WIKAWIFCHNEIYG*S*YLFVQHNGKYVVYLLKVRTDRVRVNCICGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ET  432

Range 5: 141 to 431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.2 bits(339) 0.0 78/97(80%) 0/97(0%) Plus/Minus
Query       10  VS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQD  300
                VS*R LL*TN+IHKM GL*+I  * *GKSY G LH Q *ALICC RT HRPQ QLTRTLSVRTLR+*TTY PLC*TKRY LHP*ISL QKIQA IQD
Subject    141  VS*RSLL*TNTIHKM*GL*RIVL*P*GKSYSGNLHAQF*ALICCLRTYHRPQMQLTRTLSVRTLRR*TTYLPLC*TKRY*LHP*ISLWQKIQALIQD  431

Range 6: 183 to 431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.9 bits(312) 0.0 66/83(80%) 0/83(0%) Minus/Plus
Query       10  RVKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRN  258
                RVK VPFCSTQW+ICC  S*GTN*QGPSQL LRAM CA TAD*GL+L+MK S*I*FAL+L+ N SQT HFVDGVC KK SLRN
Subject    183  RVKLVPFCSTQWQICCLPS*GTN*QGPSQLHLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRN  431

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 9

Range 1: 6022 to 6324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.7 bits(519) 0.0 99/101(98%) 0/101(0%) Minus/Plus
Query        2  VHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWSLFKEGIFKKPQL  304
                VHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCAN RLRLKTEHEGFLNMICLKAKVQFVTNPTFCGW LFKEGIFKKPQL
Subject   6022  VHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQL  6324

Range 2: 6027 to 6317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.6 bits(377) 0.0 72/97(74%) 0/97(0%) Plus/Minus
Query        9  GFLKIPSLNKLHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDPVSSYLKKVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR  299
                GFLKIPSLN+ HPQNVG VTNCT ALRQIIF+ PSCSV S +   AH+SSPAKA+DSDPV+SYL+KVNN+ AIVL +KVLASPVNL+IA +PS DP+
Subject   6027  GFLKIPSLNRHHPQNVGLVTNCTFALRQIIFKKPSCSVFSRSRRFAHISSPAKAMDSDPVNSYLRKVNNMLAIVLKRKVLASPVNLMIANEPSFDPK  6317

Range 3: 6022 to 6324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 48/101(48%) 0/101(0%) Plus/Minus
Query        2  ELGFLKDSFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LGPCQFVP*ESEQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMN  304
                EL FLK+S  KQTP TKCGV D+LH  F+A+HI +  M       AV  H+I  KSN     QF+  + +QH+ HCVE++  G T KSH SK +KL S+++
Subject   6022  ELRFLKNSLLKQTPPTKCGVGDELHFRFEADHIQKALMLRF*SQPAVCTHIIPSKSNGFRSRQFISQKGKQHVGHCVEKESAGLTSKSHDSK*AKL*SQVD  6324

Range 4: 6033 to 6179 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 22/49(45%) 0/49(0%) Minus/Plus
Query      147  IQAWIFCYNEIYG*SQYLFVQHNGEYVVHFLKVRTDRVRVNCFCGR*HV  293
                I+AW+ CY+EIY * Q+   QHNG++VV+  ++  D + ++CFC  *+V
Subject   6033  IKAWLICYHEIYW*GQHFPFQHNGQHVVYLSEI*IDGI*IHCFCWG*YV  6179

Range 5: 6225 to 6317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 19/31(61%) 0/31(0%) Minus/Plus
Query        9  KYDLP*S*GAICHKPHILWMEFV*RRNL*ET  101
                +YDLP S  AI H+PHILW+  V*  N *ET
Subject   6225  EYDLPQSESAIRHQPHILWVVSV*GGNF*ET  6317

Range 6: 6071 to 6325 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 41/85(48%) 0/85(0%) Minus/Plus
Query        1  VKPVPFCSTQWRICCSLS*GTN*QGPSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKESLRNPNS  255
                V+P    STQW  CC   *  N*+  + LLL  M C  TA    + +M+  *I* A K +CN S TPHFV GVCL++E LRN +S
Subject   6071  VRPALSFSTQWPTCCLPF*DMN*RDLNPLLLLGMICVQTAGCD*KRSMRAF*I*SASKRKCNSSPTPHFVGGVCLRREFLRNLSS  6325

Range 7: 6568 to 6663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 28/32(88%) 0/32(0%) Minus/Plus
Query      302  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSV  397
                V IMNNLVKALS FEFVGV+SVL+FPVVVHSV
Subject   6568  VSIMNNLVKALSEFEFVGVFSVLKFPVVVHSV  6663

Range 8: 6032 to 6178 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 23/49(47%) 0/49(0%) Plus/Minus
Query      148  TCHRPQKQLTRTLSVRTLRK*TTYSPLC*TKRYWLHP*ISL*QKIQAWI  294
                T H  QKQ  +  S+    +*TT  PLC*  + W H *IS *Q  QA I
Subject   6032  TYHPQQKQWIQIPSIHISER*TTCWPLC*KGKCWPHQ*IS**QMSQALI  6178

Range 9: 6212 to 6316 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 20/35(57%) 0/35(0%) Plus/Minus
Query       10  VS*RFLL*TNSIHKMWGL*QIAP*L*GKSYLGTLH  114
                VS*+F  *T++ HKMWG *+IA  L*G+SY  + H
Subject   6212  VS*KFPP*TDTTHKMWGW*RIALSL*GRSYSKSPH  6316

Nucleotide Sequence (1021 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
103
206
309
412
515
618
721
824
927
1021

Descriptions

Alignments

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 12

Range 1: 487 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
589.9 bits(1281) 0.0 246/253(97%) 0/253(0%) Plus/Plus
Query      117  DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R  875
                DKSNHVVSKKGIGDSDSLKKLVPRVIS GARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKA+SVVLSDGSRYAVDVLHSKFCHHLLSFTPI+NLLVSNIRCFSGFDAIGIKDLEPL RGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL I FF R
Subject    487  DKSNHVVSKKGIGDSDSLKKLVPRVISAGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKAKSVVLSDGSRYAVDVLHSKFCHHLLSFTPISNLLVSNIRCFSGFDAIGIKDLEPLIRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLVISFFCR  1245

Range 2: 513 to 1244 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
531.2 bits(1153) 0.0 233/244(95%) 0/244(0%) Minus/Minus
Query      143  LQKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF  874
                LQKK M SFG+FGISREPLLPQL+TSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PR+RGSRSLMPMASKPEKHRMLETRRLLIGVKLNK WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARS+LGLTTSRKVMRSRIDQ* ISS RKRFLAP EITRGTNFLSESESPIPF
Subject    513  LQKKEMTSFGIFGISREPLLPQLITSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRIRGSRSLMPMASKPEKHRMLETRRLLIGVKLNKWWQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSILGLTTSRKVMRSRIDQ*WISS*RKRFLAPAEITRGTNFLSESESPIPF  1244

Range 3: 458 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
483.1 bits(1048) 0.0 219/263(83%) 0/263(0%) Minus/Minus
Query       88  FFRRRGWLALECLALAESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH  876
                F++R+  LALE LALA SHFFHNL*Q KQN Q*I*S  Q* CR*ADAISPRQIPYQAF* FSN+ IF**QHHD PESSYA R+LEAPDL*CRWRQNRRNTEC*K EDY*LG*SSIS GRILNG HRPHSVNH IRPQI L*ANTYLTMVVNTFHTSYHPEQRAFG Q+FYTGKPK LSFQESQQGF  V Q LQEA WA*PLPGR**D V*T+N  HH EKDSLH  RSHE PIS* SQNHQFPSC*QHG*T H*SL QI  H
Subject    458  FYKRKR*LALEYLALAGSHFFHNL*QAKQNLQ*I*SLSQ*ACR*ADAISPRQIPYQAF*EFSNRGIF**QHHDVPESSYACRELEAPDL*CRWRQNRRNTEC*KPEDY*LG*SSISGGRILNGEHRPHSVNHPIRPQIWL*ANTYLTMVVNTFHTSYHPEQRAFGPQRFYTGKPKDLSFQESQQGFPEVSQLLQEAYWA*PLPGR**DHV*TNNGSHHEEKDSLHQRRSHEEPIS*VSQNHQFPSC*QHG*TCH*SLSQILNH  1246

Range 4: 469 to 828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.1 bits(546) 0.0 103/120(86%) 0/120(0%) Minus/Minus
Query       99  FKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK  458
                FKQIPT*QWL*IHFTPVTIRSKEHLA R+SILVSPR+*AFRRANKDFR Y+S CKKH+GPNHFQEGDEI YRP+M+ IM+KKIPCT  DHTR+QFLE VRITNSLLADNMVRL+TRAYHK
Subject    469  FKQIPT*QWL*IHFTPVTIRSKEHLALRDSILVSPRI*AFRRANKDFRRYHSCCKKHIGPNHFQEGDEITYRPIMDLIMKKKIPCTSGDHTRNQFLE*VRITNSLLADNMVRLVTRAYHK  828

Range 5: 877 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 99/123(80%) 0/123(0%) Minus/Minus
Query      507  SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*ME  875
                S++E D *LWN+WH*Q ATSSTTY+K SKI NEFNL  SR VDKLTQFRLGRFLIRLF+ SQI++YFSNNIMM+RKAAMH A *RLQIFNADGVKTGETPNVRN KI +WG+AQ*V+AEF*ME
Subject    877  STKERDD*LWNIWH*QGATSSTTYNKRSKIFNEFNLSPSRLVDKLTQFRLGRFLIRLFKSSQIEVYFSNNIMMYRKAAMHAAN*RLQIFNADGVKTGETPNVRNQKITNWGKAQ*VVAEF*ME  1245

Range 6: 468 to 920 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
289.3 bits(625) 0.0 128/151(85%) 0/151(0%) Plus/Plus
Query       98  ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPN  550
                IC KL** V*PCCQQEGNW*F*L QEIG SCDL  CKESFS **+ LLVYT SHHLPGSG*AQ+ASCN C+T  NPCWLS*KLK LGLPV*N * PNALCSGW*LV*NVFTTIVK*VFA*S ICGLI WFTLCGRC PFKILP LIEL+PN
Subject    468  ICDKL**QV*PCCQQEGNW*F*LTQEIGSSCDLRWCKESFSS**DPLLVYT*SHHLPGSG*AQYASCNSCDTSGNPCWLS*KLKSLGLPV*NL*GPNALCSGW*LV*NVFTTIVK*VFA*SQICGLIGWFTLCGRCSPFKILPPLIELYPN  920

Range 7: 1005 to 1241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 64/79(81%) 0/79(0%) Plus/Plus
Query      635  YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASHPLLL  871
                +A*LLSG S*CCY*NI LFEN  KA**GICRGEIASAYRQ YW+ D*IH* FCF C+KLWKKWL ANAK+SKASH  LL
Subject   1005  HA*LLSGTS*CCY*NIPLFENS*KA**GICRGEIASAYRQAYWERD*IH*RFCFACYKLWKKWLPANAKYSKASHLFLL  1241

Range 8: 737 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
301.2 bits(651) 0.0 140/170(82%) 0/170(0%) Plus/Plus
Query      367  IEFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE  876
                IE L+AKCSLLRMVTGVKCIHNHCQVGICLK +LWSY MVHAMRSM SIQNSA TY*A PQ +IF FLTFGVSPVLTPSALKIWSL* A CIAAFR IMMLLLKY  I*E  KSLIRNLPRRNCVSLST+LL  RLNSL+ILL L *VVEEVA C*CQ FQS* S S  E
Subject    737  IESLRAKCSLLRMVTGVKCIHNHCQVGICLKPNLWSYRMVHAMRSMFSIQNSATTY*ALPQLVIFWFLTFGVSPVLTPSALKIWSL*FAACIAAFRYIMMLLLKYTSI*ELLKSLIRNLPRRNCVSLSTSLLGERLNSLKILLRLL*VVEEVAPC*CQIFQS*SSLSFVE  1246

Range 9: 491 to 682 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 53/64(83%) 0/64(0%) Plus/Plus
Query      121  SLTMLSARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*Y  312
                SLTMLSARRELVILT SRNW LV*S  VQGIFF MM+ I GLY ISSPSWKWLGP CFLQ+L*Y
Subject    491  SLTMLSARRELVILTHSRNWFLV*SPLVQGIFFFMMRSIIGLYVISSPSWKWLGPICFLQQL*Y  682

Range 10: 1150 to 1278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 29/43(67%) 0/43(0%) Minus/Plus
Query      870  IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS  998
                I DFA +V   GRSGSLL+PNIP +V SFFCRM+ N LAR+SS
Subject   1150  IEDFASLVISCGRSGSLLMPNIPKLVISFFCRMMPNALARLSS  1278

Range 11: 1146 to 1277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.1 bits(127) 0.0 26/44(59%) 0/44(0%) Plus/Minus
Query      871  EEILARTFSNILQKKEKTTIGMFGNSKEPLLPPHLTTKAKSPIN  1002
                +E LAR F  ILQKKE T+ G+FG S+EPLLP  +T++AKS +N
Subject   1146  DESLARAFGIILQKKEMTSFGIFGISREPLLPQLITSEAKSSMN  1277

Range 12: 1151 to 1279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 26/43(60%) 0/43(0%) Plus/Minus
Query      869  LKKS*PEHFPTFYKRRRKPPLECLAIAKNHFFHHI*QLKQNPQ  997
                L K+*PEH  +FYKR+R   LE LA+A +HFFH++*Q KQN Q
Subject   1151  LMKA*PEHLASFYKRKR*LALEYLALAGSHFFHNL*QAKQNLQ  1279

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 14

Range 1: 487 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
598.1 bits(1299) 0.0 249/253(98%) 0/253(0%) Plus/Plus
Query      117  DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R  875
                DKSNHV+SKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKL I FF R
Subject    487  DKSNHVISKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLVISFFCR  1245

Range 2: 467 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
563.7 bits(1224) 0.0 245/260(94%) 0/260(0%) Minus/Minus
Query       97  FFRRRGWLALECLALAESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQI  876
                F++RR  LALECLALAESHFFHNL*QVKQNPQ*I*SPFQ VCR*ADAISPRQI YQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPD *CRWRQN+RNTEC*KL+DY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFG QKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR *D V*TSNEFHH EKDSLHL*RSHEGPIS*ASQNHQFPSC* HG*TYH*SL QI
Subject    467  FYKRRR*LALECLALAESHFFHNL*QVKQNPQ*I*SPFQLVCR*ADAISPRQILYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDP*CRWRQNQRNTEC*KLKDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGPQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGRL*DHV*TSNEFHHEEKDSLHL*RSHEGPIS*ASQNHQFPSC**HG*TYH*SLSQI  1246

Range 3: 513 to 1244 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
542.2 bits(1177) 0.0 239/244(98%) 0/244(0%) Minus/Minus
Query      143  LQKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF  874
                LQKK + SFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLET+RLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISS RKRFLAPVEITRGTNFLSESESPIPF
Subject    513  LQKKEITSFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETKRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISS*RKRFLAPVEITRGTNFLSESESPIPF  1244

Range 4: 469 to 834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
281.0 bits(607) 0.0 116/122(95%) 0/122(0%) Minus/Minus
Query       99  SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK  464
                SSFKQIPT*QWL*IHFTPVTIRSKEHLA RNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEG EI YRPVMNFIM+KKIPCTCRDHTRDQFLERVRITNSLLA++MVRLITRAYHK
Subject    469  SSFKQIPT*QWL*IHFTPVTIRSKEHLALRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGYEITYRPVMNFIMKKKIPCTCRDHTRDQFLERVRITNSLLANDMVRLITRAYHK  834

Range 5: 877 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.9 bits(574) 0.0 116/123(94%) 0/123(0%) Minus/Minus
Query      507  SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*ME  875
                S++EGD *LWNVWH*QRATSSTTYDK*SKILNEFNLPSS FVDKLTQFRLGRF IRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQI NADGVKT ETPNVRN*KIIDWGEAQ*VMAEF*ME
Subject    877  STKEGDN*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSWFVDKLTQFRLGRFFIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQILNADGVKTRETPNVRN*KIIDWGEAQ*VMAEF*ME  1245

Range 6: 468 to 926 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
332.8 bits(720) 0.0 146/153(95%) 0/153(0%) Plus/Plus
Query       98  ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ*  556
                IC KL***V*PC  QEGNW*F*LAQEIGPSCDLYRCKESFS **NSLLVYT SH+LPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF* PNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ*
Subject    468  ICDKL***V*PCH*QEGNW*F*LAQEIGPSCDLYRCKESFSS**NSLLVYT*SHNLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*GPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ*  926

Range 7: 1005 to 1241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 75/79(95%) 0/79(0%) Plus/Plus
Query      635  YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASHPLLL  871
                YA*LLSGAS*CCY*NISLFENPQKA** ICRGEIASAYRQT WKGD*IH*GFCFTCHKLWKKWLSANAKHSKAS+ LLL
Subject   1005  YA*LLSGAS*CCY*NISLFENPQKA**RICRGEIASAYRQTNWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASYLLLL  1241

Range 8: 737 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
365.3 bits(791) 0.0 162/170(95%) 0/170(0%) Plus/Plus
Query      367  IEFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE  876
                IEFL+AKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVS VLTPSAL+IWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLI+NLPRRNCVSLSTN LEGRLNSLRILLHLS*VVEEVALC*CQTFQS* SPS  E
Subject    737  IEFLRAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSLVLTPSALRIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIKNLPRRNCVSLSTNQLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*LSPSFVE  1246

Range 9: 488 to 685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 61/66(92%) 0/66(0%) Plus/Plus
Query      118  ISLTMLSARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*YP  315
                ISLTM  ARRELVILTRSRNWSLV*SLQVQGIFF MMKFITGLY IS PSWKWLGPTCFLQRL*YP
Subject    488  ISLTMSLARRELVILTRSRNWSLV*SLQVQGIFFFMMKFITGLYVIS*PSWKWLGPTCFLQRL*YP  685

Range 10: 1136 to 1279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 31/48(65%) 0/48(0%) Plus/Minus
Query      869  LKKS*PEHFPTFYKRRRKPPLECLAIAKNHFFHHI*QLKQNPQSIKTP  1012
                L K+*PEH  +FYKRRR   LECLA+A++HFFH++*Q+KQNPQ I +P
Subject   1136  LMKA*PEHLASFYKRRR*LALECLALAESHFFHNL*QVKQNPQ*I*SP  1279

Range 11: 1150 to 1278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 29/43(67%) 0/43(0%) Minus/Plus
Query      870  IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS  998
                I DFA +V   GRSGSLL+PNIP +V SFFCRM+ N LAR+SS
Subject   1150  IEDFASLVISCGRSGSLLMPNIPKLVISFFCRMMPNALARLSS  1278

Range 12: 1146 to 1277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 27/44(61%) 0/44(0%) Plus/Minus
Query      871  EEILARTFSNILQKKEKTTIGMFGNSKEPLLPPHLTTKAKSPIN  1002
                +E LAR F  ILQKKE T+ GMFG S+EPLLP  +T++AKS +N
Subject   1146  DESLARAFGIILQKKEITSFGMFGISREPLLPQLMTSEAKSSMN  1277

Range 13: 1131 to 1280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      868  WMGVLIDWGFCFSC*MWWKKWFFAIAKHSNGGFXXXX*NVGKCSG*DFFR  1017
                W G  I  GFCF+C   WKKW  A AKHS   +LLLL*N  KCSG* F +
Subject   1131  WKGD*IH*GFCFTCHKLWKKWLSANAKHSKASYLLLL*NDAKCSG*AFIK  1280

Range 14: 1129 to 1269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 30/47(64%) 0/47(0%) Plus/Minus
Query      879  PSQNIFQHSTKEGENHHWNVWQ*QRXXXXXXXXXXXKIPNQLKHPST  1019
                PSQ+I+ HSTKEG+N  WNVW *QR TSSTT + *SKI N+   PS+
Subject   1129  PSQSIWHHSTKEGDN*LWNVWH*QRATSSTTYDK*SKILNEFNLPSS  1269

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 11

Range 1: 487 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
539.0 bits(1170) 0.0 220/253(87%) 0/253(0%) Plus/Plus
Query      117  DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R  875
                DKS+ V+SKKGIGDSD+L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQYR+S  Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDF+SLVISCGRSGSLLMPNI KL I FF R
Subject    487  DKSSQVISKKGIGDSDTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYRVSNNQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLASNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFSSLVISCGRSGSLLMPNISKLVISFFCR  1245

Range 2: 513 to 1241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
415.7 bits(901) 0.0 187/243(77%) 0/243(0%) Minus/Minus
Query      143  QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF  871
                QKK + +  +FG+S+EPLLPQLMTSE KSSMN ISLPVGLS+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRS MP+ASKPEKH + E RRL +GVKL++*W NFE   ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS W    LYW*AQG +LSGEPT  SGGITAVA+S+LG  TS+K+MRS IDQ**ISS RKRF APVEITRGTN  S SESPIPF
Subject    513  QKKDITNLEIFGMSKEPLLPQLMTSEEKSSMNFISLPVGLSMSWRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSFMPIASKPEKHLIFEARRLPMGVKLSR*WLNFE*MISTE*REPSGRTTDLALSRYLQDKGCEYISFQLPSGAKSNWLLLTLYW*AQGLRLSGEPTSTSGGITAVAKSILGFATSKKLMRSLIDQ**ISSCRKRFRAPVEITRGTNLRSVSESPIPF  1241

Range 3: 469 to 834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 56/122(46%) 0/122(0%) Minus/Minus
Query       99  SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK  464
                SS K + T   L*+H  P+ I SK+ L   +S+LV PR+ AFRRAN+     +  C++H    + Q+ +EIA  PVMN IM++KIP TC ++ R+Q  E VRI N+LLA+++   ITR YHK
Subject    469  SSLK*VSTG*RL*VHLIPIAIWSKKQLVVTDSVLVGPRIEAFRRANQHLWRNHCSCQEHTWLCNIQKINEIAD*PVMNLIMQEKIPSTCGNYARNQPPECVRIANTLLANDLTGFITRTYHK  834

Range 4: 880 to 1215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 53/112(47%) 0/112(0%) Minus/Minus
Query      510  NVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M  845
                N+ H QRAT STTYD * KI +EF LP    +++L +FRL   L+R  E S I+IY  ++I+M+R+A +HT  *RL+I  A  ++ GE P++   KI   GEA+ VMA+F*+
Subject    880  NIRHEQRATPSTTYD**GKIFDEFYLPPCGLINELAKFRLSGLLVRFLESS*IEIYLGDHIVMYREATVHTTA*RLKILYAYCIEAGEAPHI*GQKIAHGGEAKQVMAKF*V  1215

Range 5: 698 to 1201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.1 bits(282) 0.0 74/168(44%) 0/168(0%) Minus/Minus
Query      328  AESHFFHNL*QVKQNPQ*I*SPFQ*VCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQ  831
                A+SH FHNL* V++N +*I SP     +*   +SP++ P    * F N+DI  * H D   S+ AY  LEA D  C   ++RR+T   + ED   G*S   DG IL+  ++ +SVNHQ+ PQI* *   Y    V+T H++ H EQ+A G     TG+PK   FQESQ
Subject    698  AKSHSFHNL*LVRKNLR*ILSPSLWAYQ*VGEVSPQRTPCPVS*EFLNRDISW*PHRDVQGSNCAYHGLEAQDPLCLLHRSRRSTSYLRPEDCPWG*S*AGDG*ILSE*YQLNSVNHQVEPQI*P*VGIYRIKAVSTSHSNCHLEQKAIGCY*LCTGRPKD*GFQESQ  1201

Range 6: 458 to 640 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 34/61(56%) 0/61(0%) Minus/Minus
Query       88  PGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH  270
                P  **DR  TSNE HH  KDS HL +    P S   QN Q+PSC*     YH*+L QIQTH
Subject    458  PKN**DR*LTSNESHHAGKDSEHLWKLRAEPTSGVCQNRQYPSC**LDWIYH*NLSQIQTH  640

Range 7: 468 to 920 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 70/151(46%) 0/151(0%) Plus/Plus
Query       98  ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPN  550
                IC K ***+     QEG W F*   E+G + + +RC ESF  **+SLLV  RSH   G   A++A  N  ++     WLS*K + LGLPV + *+P A CS W L *+V T  + *+  * *ICG  *WFTL       KI PS   LHP+
Subject    468  ICDKF***IQSSH*QEGYWRF*HTPEVGSARNFHRCSESFPA**DSLLVNQRSH*FFGCCKAKYALGNCSDSSRGAGWLS*KPQSLGLPVQSQ*QPIAFCSRWQLE*DVLTAFIL*IPT*G*ICGST*WFTLFS*YHSLKI*PSPA*LHPH  920

Range 8: 1005 to 1214 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 30/70(43%) 0/70(0%) Plus/Plus
Query      635  YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKH  844
                YA LL   S C + +ISLF+N Q+   G+  GE +  +   + +GD IH  F  T HKLWK+WL A+A++
Subject   1005  YAQLLPCTSRCGHQDISLFKNSQETGQGVR*GETSPTH**AHREGDKIHRRFFLTSHKLWKEWLFAHAEY  1214

Range 9: 740 to 1216 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 71/159(45%) 0/159(0%) Plus/Plus
Query      370  EFLKAKCSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTF  846
                E +   C LL+M  G++C H+   V   L+LDLW YLMVHA++ +S  QN AIT  ASP   IF     G SP     A +I SL*  VC  A   I M   +YI I*E S++  R+  RRN  +   +   GR NS +I  H S*VVE VALC C+ F
Subject    740  ESVTTNCFLLQMAIGMRCTHSLYPVDTYLRLDLWFYLMVHAIQLISFTQNLAITCLASPPWAIFWPQI*GASPASMQ*A*RILSL*AVVCTVASLYITMWSPRYISI*ELSRNRTRSPLRRNFANSLISPQGGR*NSSKIFPH*S*VVEGVALCSCRIF  1216

Range 10: 509 to 670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 27/54(50%) 0/54(0%) Plus/Plus
Query      139  ARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQ  300
                ARR L ILT S  W   *  QV GIF  MM+FITG  AIS   W      C  Q
Subject    509  ARRVLAILTHSGGWFRA*FPQVLGIFSCMMRFITGQSAISLIFWMLQSQVCSWQ  670

Range 11: 1150 to 1278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 27/43(63%) 0/43(0%) Minus/Plus
Query      870  IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS  998
                I DF+ +V   GRSGSLL+PNI  +V SFFCRM+ N LAR+SS
Subject   1150  IEDFSSLVISCGRSGSLLMPNISKLVISFFCRMMPNALARLSS  1278

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 11

Range 1: 487 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
538.5 bits(1169) 0.0 219/253(87%) 0/253(0%) Plus/Plus
Query      117  DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R  875
                DKS+ ++SKKGIGDS +L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+IS+ Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKFCHHLLSFTPI NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDF+SLVISCGRSGSLLMPNI KL I F  R
Subject    487  DKSSQIISKKGIGDSSTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDDQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFCHHLLSFTPIGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFSSLVISCGRSGSLLMPNISKLVISFLCR  1245

Range 2: 513 to 1241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
404.7 bits(877) 0.0 186/243(77%) 0/243(0%) Minus/Minus
Query      143  QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF  871
                Q+  M +  M GIS+EPLLPQL+T+E KSSMN ISLPVGLSIS*R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKH M E +RL +GVKL+K WQNFE   ST *REPS  TTDLA SKYL D GCEYIS QLPSGAKS   S ILY *AQG +LSGEPT  SGGITAVA+S+LGL TS+K +RS IDQ**ISS RKRFLAPVEITRGTN  S  ESP+PF
Subject    513  QRNDMTNLEMLGISKEPLLPQLITNEEKSSMNFISLPVGLSIS*RSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHLMFEVKRLPMGVKLSKWWQNFE*MISTE*REPSGSTTDLAFSKYLHDKGCEYISFQLPSGAKSS*SSLILY**AQGLRLSGEPTSTSGGITAVAKSILGLATSKKFIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF  1241

Range 3: 469 to 834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 61/122(50%) 0/122(0%) Minus/Minus
Query       99  SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK  464
                SS + +  *Q L*+H  PV I SKE L   N +L+ PRV AFRR N+ F G +  C+KH   +H QE  +IA  PVMNFIM+KKIP TC +H RDQ  E   +TN+ LA+++   +TR YHK
Subject    469  SSLQ*VSA*QRL*VHLIPVAIWSKEQLIVTNFVLIGPRVKAFRRTNQHFWGDHRSCQKHTWLSHIQEIYQIAN*PVMNFIMQKKIPSTCGNHARDQPPECAGVTNAFLANDLA*FVTRTYHK  834

Range 4: 880 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 57/122(47%) 0/122(0%) Minus/Minus
Query      510  SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M  875
                S+EE   *L NV H QRAT  T Y+ * KILNEF       ++KLT+  L R L+ L +   +K+Y   NIMMH K  +H  T*R +I  A  +KT +TP+V   KI   GEA+ V+AEF*+
Subject    880  SAEE*YD*LRNVRHKQRATPPTAYN**GKILNEFYFSPCGLINKLTKLCLSRLLVWLLKSP*VKVYLGYNIMMHWKTTVHATT*RFKILYAYCIKTRKTPHV*GQKIAYGGEAKQVVAEF*V  1245

Range 5: 458 to 1120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 101/221(46%) 0/221(0%) Minus/Minus
Query       88  R*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH  750
                +* D   P+Q P  A *   +K I   QHHDA E++ A  DLE  D  C   QN++NT C + +D   G*S  S GRIL+  ++  SV+ Q  PQI*   +  +T VV+T H+S H EQRA     F T +PKG  FQE+Q    G    L +A  A*P P    DR  TSNEFHH EKDS HL +S  GP S    +HQ  SC*  G   H*+L QIQ H
Subject    458  Q*VDEALPQQTPCLAS*ESLSKGISWLQHHDALENNCACHDLEVQDPLCLLHQNQKNTSCLRSKDCLWG*S*ASGGRILSE*YQLSSVSRQAVPQI*PSVSICMTKVVSTSHSSCHLEQRAADRH*FCTDRPKG*GFQENQPALLGGSPQLPKAYLA*PHPRNLSDR*LTSNEFHHAEKDS*HLWKSRAGPTSGVCWSHQCLSC**FGLICH*NLSQIQIH  1120

Range 6: 1145 to 1216 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 13/24(54%) 0/24(0%) Minus/Minus
Query      775  ECLALAESHFFHNL*QVKQNPQ*I  846
                +C A A+SH  H+L* +++NPQ*I
Subject   1145  KC*A*AKSHSSHSL*LMRKNPQ*I  1216

Range 7: 758 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 76/163(47%) 0/163(0%) Plus/Plus
Query      388  CSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE  876
                CSLL+M TG++C HN C      +LDLW  L  HA + +S  QNSA T  ASP   IF*  T GV  VL   A +I +L*V  C   F+CIMML  +Y F *   +S  R+L R++ V+L  +    + NSLRI  H  * V  VALC C TF S*   SS E
Subject    758  CSLLQMATGMRCTHNLCHADTY*RLDLWYCLTAHATQLISFTQNSATTCLASPP*AIF*PQT*GVFLVLMQ*A*RILNL*VVACTVVFQCIMML*PRYTFT*GLLRSQTRSLLRQSFVNLLISPQGEK*NSLRIFPH*L*AVGGVALCLCLTFLS*SYHSSAE  1246

Range 8: 509 to 685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 32/59(54%) 0/59(0%) Plus/Plus
Query      139  ARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*YP  315
                AR+ LV    S  WS  *  QV GIFF MMKFITG  AI   SW WL   CF Q  * P
Subject    509  ARKALVTPAHSGGWSRA*FPQVLGIFFCMMKFITGQLAI**ISWMWLSQVCFWQLR*SP  685

Range 9: 468 to 923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 74/152(49%) 0/152(0%) Plus/Plus
Query       98  ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ  553
                IC K ** + P   QE +W*     E+GP+ D +RC ESFS **NSLLV  RS    G G*A++A  N  + P +  W S*K  PLGL V N *R  ALCS W L *+V TT V  +    *ICG  *  TL       KILP L  LHP++
Subject    468  ICDKF**QIKPNH*QERHW*LQHTPEVGPARDFHRC*ESFSA**NSLLVN*RSDKFLGCG*AKYAFGNCGDPPRSAGWFS*KP*PLGLSVQN**RSAALCSRWQLE*DVLTTFVMQILTEG*ICGTA*RLTLLS*YHSLKILPPLA*LHPHR  923

Range 10: 1005 to 1229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 31/75(41%) 0/75(0%) Plus/Plus
Query      635  YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASH  859
                +A L S AS*CC  +I L ++  +A  G+C G+ +S Y   + + + IH*GF    +KLW++WL A A H   SH
Subject   1005  HAQLFSSAS*CCNQDIPLLKDS*EARQGVC*GKASSTY**AHRERNKIH*GFFLISYKLWEEWLFAYA*HF*VSH  1229

Range 11: 1150 to 1278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 26/43(60%) 0/43(0%) Minus/Plus
Query      870  IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS  998
                I DF+ +V   GRSGSLL+PNI  +V SF CRM+ N LAR+SS
Subject   1150  IEDFSSLVISCGRSGSLLMPNISKLVISFLCRMMPNALARLSS  1278

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 11

Range 1: 487 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
538.1 bits(1168) 0.0 219/253(87%) 0/253(0%) Plus/Plus
Query      117  DKSNHVVSKKGIGDSDSLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVGSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLMPNIPKLAIPFF*R  875
                DKS+ ++SKKGIGDS +L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LVGSPESLNPWAYQY+IS+ Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY VD++HSKFCHHLLSFTPI NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDF+SLVISCGRSGSLLMPNI KL I F  R
Subject    487  DKSSQIISKKGIGDSSTLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKISDDQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYLVDIIHSKFCHHLLSFTPIGNLLTSNLRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFSSLVISCGRSGSLLMPNISKLVISFLCR  1245

Range 2: 513 to 1241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
402.0 bits(871) 0.0 185/243(76%) 0/243(0%) Minus/Minus
Query      143  QKKGMASFGMFGISREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCIPRLRGSRSLMPMASKPEKHRMLETRRLLIGVKLNK*WQNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGEPTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSESESPIPF  871
                Q+  M +  M GIS+EPLLPQL+T+E KSSMN ISLPVGLSIS*R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLC+PRLRGSRS MP+ASKPEKH   E +RL +GVKL+K WQNFE   ST *REPS  TTDLA SKYL D GCEYIS QLPSGAKS   S ILY *AQG +LSGEPT  SGGITAVA+S+LGL TS+K +RS IDQ**ISS RKRFLAPVEITRGTN  S  ESP+PF
Subject    513  QRNDMTNLEMLGISKEPLLPQLITNEEKSSMNFISLPVGLSIS*RSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHLKFEVKRLPMGVKLSKWWQNFE*MISTK*REPSGSTTDLAFSKYLHDKGCEYISFQLPSGAKSS*SSLILY**AQGLRLSGEPTSTSGGITAVAKSILGLATSKKFIRSLIDQ**ISSCRKRFLAPVEITRGTNLRSVLESPMPF  1241

Range 3: 469 to 834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 61/122(50%) 0/122(0%) Minus/Minus
Query       99  SSFKQIPT*QWL*IHFTPVTIRSKEHLAFRNSILVSPRV*AFRRANKDFRGYYSRCKKHVGPNHFQEGDEIAYRPVMNFIMEKKIPCTCRDHTRDQFLERVRITNSLLADNMVRLITRAYHK  464
                SS + +  *Q L*+H  PV I SKE L   N +L+ PRV AFRR N+ F G +  C+KH   +H QE  +IA  PVMNFIM+KKIP TC +H RDQ  E   +TN+ LA+++   +TR YHK
Subject    469  SSLQ*VSA*QRL*VHLIPVAIWSKEQLIITNFVLIGPRVKAFRRTNQHFWGDHRSCQKHTWLSHIQEIYQIAN*PVMNFIMQKKIPSTCGNHARDQPPECTGVTNAFLANDLA*FVTRTYHK  834

Range 4: 880 to 1245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 54/122(44%) 0/122(0%) Minus/Minus
Query      510  SSEEGDG*LWNVWH*QRATSSTTYDK*SKILNEFNLPSSRFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHRKAAMHTAT*RLQIFNADGVKTGETPNVRN*KIIDWGEAQ*VMAEF*M  875
                S+EE   *L +V H QRAT  T Y+ * KILNEF       ++KLT+  L R L+ L +   +K+Y   +IMMH K  +H   *R +I  A  +KT +TP V   KI   GEA+ V+AEF*+
Subject    880  SAEE*YD*LRDVRHKQRATPPTAYN**GKILNEFYFSPCGLINKLTKLCLSRLLVWLLKSP*VKVYLGYDIMMHWKTTVHATA*RFKILYAYCIKTRKTPQV*GQKIAYGGEAKQVVAEF*V  1245

Range 5: 458 to 1120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 99/221(45%) 0/221(0%) Minus/Minus
Query       88  R*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPESSYAYRDLEAPDL*CRWRQNRRNTEC*KLEDY*LG*SSISDGRILNGGHRPHSVNHQIRPQI*L*ANTYLTMVVNTFHTSYHPEQRAFGLQKFYTGKPKGLSFQESQQGFQGVLQPLQEACWA*PLPGR**DRV*TSNEFHHGEKDSLHL*RSHEGPIS*ASQNHQFPSC*QHG*TYH*SLPQIQTH  750
                +* D   P+Q P  A *   +K I   +HHDA E++ A   LE  D  C   QN++NT   + +D   G*S  S GRIL+  ++P SV+ Q  PQI*   +  +T VV+T H+S H EQRA     F T +PKG  FQE+Q    G    L +A  A*P P    DR  TSNEFHH EKDS HL +S  GP S    +HQ  SC*  G   H*+L QIQ H
Subject    458  Q*VDEALPQQTPCLAS*ESLSKGISWLRHHDALENNCACHGLEVQDPLCLLHQNQKNTSSLRSKDCLWG*S*ASGGRILSE*YQPSSVSRQAVPQI*PSVSICMTKVVSTSHSSCHLEQRAADHH*FCTDRPKG*GFQENQPALLGGSPQLPKAYLA*PHPRNLSDR*LTSNEFHHAEKDS*HLWKSRAGPTSGVYWSHQCLSC**FGLICH*NLSQIQIH  1120

Range 6: 1145 to 1213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 13/23(57%) 0/23(0%) Minus/Minus
Query      775  CLALAESHFFHNL*QVKQNPQ*I  843
                C A A+SH  H+L* +++NPQ*I
Subject   1145  C*A*AKSHSSHSL*LMRKNPQ*I  1213

Range 7: 758 to 1246 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 73/163(45%) 0/163(0%) Plus/Plus
Query      388  CSLLRMVTGVKCIHNHCQVGICLKLDLWSYLMVHAMRSMSSIQNSAITY*ASPQSIIF*FLTFGVSPVLTPSALKIWSL*VAVCIAAFRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNLLEGRLNSLRILLHLS*VVEEVALC*CQTFQS*PSPSSEE  876
                CSLL+M TG++C HN C      +LDLW  L  HA   +S  QNSA T  ASP   IF*  T GV  VL   A +I +L*   C   F+CIMM   +Y F *   +S  R+L R++ V+L  +    + NSLRI  H  * V  VALC C T  S*   SS E
Subject    758  CSLLQMATGMRCTHNLCHADTY*RLDLWYCLTAHATWLISFTQNSATTCLASPP*AIF*PQT*GVFLVLMQ*A*RILNL*AVACTVVFQCIMMS*PRYTFT*GLLRSQTRSLLRQSFVNLLISPQGEK*NSLRIFPH*L*AVGGVALCLCLTSLS*SYHSSAE  1246

Range 8: 509 to 685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 32/59(54%) 0/59(0%) Plus/Plus
Query      139  ARRELVILTRSRNWSLV*SLQVQGIFFSMMKFITGLYAISSPSWKWLGPTCFLQRL*YP  315
                AR+ LV    S  WS  *  QV GIFF MMKFITG  AI   SW WL   CF Q  * P
Subject    509  ARKALVTPVHSGGWSRA*FPQVLGIFFCMMKFITGQLAI**ISWMWLSQVCFWQLR*SP  685

Range 9: 468 to 923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 74/152(49%) 0/152(0%) Plus/Plus
Query       98  ICGKL***V*PCCQQEGNW*F*LAQEIGPSCDLYRCKESFSP**NSLLVYTRSHHLPGSG*AQHASCNGCNTP*NPCWLS*KLKPLGLPV*NF*RPNALCSGW*LV*NVFTTIVK*VFA*S*ICGLI*WFTLCGRCPPFKILPSLIELHPNQ  553
                IC K ** + P   QE +W*     E+GP+ D +RC ESFS **NSLLV  RS    G G*A++A  N  + P +  W S*K  PLGL V N *   ALCS W L *+V TT V  +    *ICG  *  TL G     KILP L  LHP++
Subject    468  ICDKF**QIKPNH*QERHW*LQYTPEVGPARDFHRC*ESFSA**NSLLVN*RSDKFLGCG*AKYAFGNCGDPPRSAGWFS*KP*PLGLSVQN***SAALCSRWQLE*DVLTTFVMQILTEG*ICGTA*RLTLLG*YHSLKILPPLA*LHPHR  923

Range 10: 1005 to 1229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 30/75(40%) 0/75(0%) Plus/Plus
Query      635  YA*LLSGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTYWKGD*IH*GFCFTCHKLWKKWLSANAKHSKASH  859
                +A L S AS*C   +I L ++  +A  G+C G+ +S Y   + + + IH*GF    +KLW++WL A A H   SH
Subject   1005  HAQLFSSAS*CRNQDIPLLKDS*EARQGVC*GKASSTY**AHRERNKIH*GFFLISYKLWEEWLFAYA*HL*VSH  1229

Range 11: 1150 to 1278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 26/43(60%) 0/43(0%) Minus/Plus
Query      870  IGDFALVVRCGGRSGSLLLPNIPMVVFSFFCRMLENVLARISS  998
                I DF+ +V   GRSGSLL+PNI  +V SF CRM+ N LAR+SS
Subject   1150  IEDFSSLVISCGRSGSLLMPNISKLVISFLCRMMPNALARLSS  1278

Nucleotide Sequence (140 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
14
28
42
56
70
84
98
112
126
140

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 5144 to 5281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 43/46(93%) 0/46(0%) Minus/Minus
Query        2  ISLHGVPSTPSFQPSWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRN  139
                ISLHGVPSTPSFQP+WPW IPSYLMGYGF*TIPHL+IQTQAPQLRN
Subject   5144  ISLHGVPSTPSFQPTWPWSIPSYLMGYGF*TIPHLNIQTQAPQLRN  5281

Range 2: 5143 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 43/46(93%) 0/46(0%) Minus/Minus
Query        1  SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI  138
                SHFTVFLQRHLSNPPGPG FQVT*WDMGF+PFLI* FRLKLLNFAI
Subject   5143  SHFTVFLQRHLSNPPGPGRFQVT*WDMGFKPFLI*TFRLKLLNFAI  5280

Range 3: 5144 to 5281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 43/46(93%) 0/46(0%) Plus/Plus
Query        2  IAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*D  139
                IAKLRSLSLN QMRNG KPISH*VTWN+PGPGGLERWR*RNTVK*D
Subject   5144  IAKLRSLSLNVQMRNGLKPISH*VTWNRPGPGGLERWR*RNTVK*D  5281

Range 4: 5145 to 5282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 42/46(91%) 0/46(0%) Plus/Plus
Query        3  LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQEGWKDGVEGTP*SEM  140
                LRS*GA*V*M K*GMV NPYPIK*LGI+QGQ GWKDGVEGTP*SEM
Subject   5145  LRS*GA*V*MFK*GMV*NPYPIK*LGIDQGQVGWKDGVEGTP*SEM  5282

Range 5: 5187 to 5282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 31/32(97%) 0/32(0%) Minus/Minus
Query       45  HLTSRCSFNAIFPTLLALVDSKLLNGIWVLNH  140
                HLTSRCSFNAIFPT LALVDSKLLNGIWVLNH
Subject   5187  HLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  5282

Range 6: 5188 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 30/31(97%) 0/31(0%) Plus/Plus
Query       46  WFKTHIPLSNLESTRARRVGKMALKEHREVR  138
                WFKTHIPLSNLESTRAR VGKMALKEHREVR
Subject   5188  WFKTHIPLSNLESTRARWVGKMALKEHREVR  5280

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 5144 to 5281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 39/46(85%) 0/46(0%) Minus/Minus
Query        2  ISLHGVPSTPSFQPSWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRN  139
                ISLHGVPS PSFQP+WP LIP YLMGYGF*TIPH SIQTQ PQ RN
Subject   5144  ISLHGVPSMPSFQPTWPLLIPDYLMGYGF*TIPHSSIQTQVPQPRN  5281

Range 2: 5143 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 39/46(85%) 0/46(0%) Minus/Minus
Query        1  SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI  138
                SHFTVFLQ HLSNPPGP *FQ+T*WDMGF+PFLI AFRLK LN AI
Subject   5143  SHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI  5280

Range 3: 5144 to 5281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 39/46(85%) 0/46(0%) Plus/Plus
Query        2  IAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*D  139
                IA+LR+LSLNA+MRNG KPISH*V WNQ GPGGLERW *RNTVK*D
Subject   5144  IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK*D  5281

Range 4: 5145 to 5282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 38/46(83%) 0/46(0%) Plus/Plus
Query        3  LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQEGWKDGVEGTP*SEM  140
                LR *G *V*ML+*GMV NPYPIK* GIN+GQ GWKDG+EGTP*SEM
Subject   5145  LRG*GT*V*MLE*GMV*NPYPIK*SGINKGQVGWKDGIEGTP*SEM  5282

Range 5: 5187 to 5282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 30/32(94%) 0/32(0%) Minus/Minus
Query       45  HLTSRCSFNAIFPTLLALVDSKLLNGIWVLNH  140
                HLTSRCSFNAIFPT LALVDS+LLNGIWVLNH
Subject   5187  HLTSRCSFNAIFPTHLALVDSRLLNGIWVLNH  5282

Range 6: 5188 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 30/31(97%) 0/31(0%) Plus/Plus
Query       46  WFKTHIPLSNLESTRARRVGKMALKEHREVR  138
                WFKTHIPLSNLESTRAR VGKMALKEHREVR
Subject   5188  WFKTHIPLSNLESTRARWVGKMALKEHREVR  5280

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 3

Range 1: 5188 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 30/31(97%) 0/31(0%) Plus/Plus
Query       46  WFKTHIPLSNLESTRARRVGKMALKEHREVR  138
                WFKTHIPLSNLESTRAR VGKMALKEHREVR
Subject   5188  WFKTHIPLSNLESTRARWVGKMALKEHREVR  5280

Range 2: 5187 to 5276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 22/30(73%) 0/30(0%) Minus/Minus
Query       45  TSRCSFNAIFPTLLALVDSKLLNGIWVLNH  134
                TSRCSF AI PT  ALVDS+LL G+ VLNH
Subject   5187  TSRCSFKAILPTQRALVDSRLLRGM*VLNH  5276

Range 3: 5143 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 21/46(46%) 0/46(0%) Minus/Minus
Query        1  SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI  138
                +H  VF Q H ++P GP   Q+ * D+ F+P  I*AF+  LL+F I
Subject   5143  THLPVFFQGHFTHPAGPCRLQIA*GDVSFKPLFI*AFQFHLLDFTI  5280

Grapevine rupestris stem pitting associated virus complete genome, genomic RNA, isolate GRSPaV MG

Sequence ID: FR691076.1 Length: 8749 Number of Matches: 4

Range 1: 5188 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 30/31(97%) 0/31(0%) Plus/Plus
Query       46  WFKTHIPLSNLESTRARRVGKMALKEHREVR  138
                WFKTHIPLSNLESTRAR VGKMALKEHREVR
Subject   5188  WFKTHIPLSNLESTRARWVGKMALKEHREVR  5280

Range 2: 5187 to 5276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/30(83%) 0/30(0%) Minus/Minus
Query       45  TSRCSFNAIFPTLLALVDSKLLNGIWVLNH  134
                TSRCSF AI PT LALVDSKLL G+WVLNH
Subject   5187  TSRCSFKAILPTHLALVDSKLLKGMWVLNH  5276

Range 3: 5143 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 23/46(50%) 0/46(0%) Minus/Minus
Query        1  SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI  138
                +H  +F   HL++PPG G*  + * ++GFEPF I*AF   L NF I
Subject   5143  AHLPMFF*GHLAHPPGSG*L*IA*GNVGFEPFFI*AFHFHLFNFTI  5280

Range 4: 5144 to 5266 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 22/41(54%) 0/41(0%) Plus/Plus
Query        2  IAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RN  124
                I KL+    NAQM+NGSKP   *   +QP PGG  RW *+N
Subject   5144  IVKLKRWKWNAQMKNGSKPTFP*AI*SQPEPGGWARWP*KN  5266

Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome

Sequence ID: KR528585.1 Length: 8595 Number of Matches: 5

Range 1: 5170 to 5262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 30/31(97%) 0/31(0%) Plus/Plus
Query       46  WFKTHIPLSNLESTRARRVGKMALKEHREVR  138
                WFKTHIPLSNLESTRAR VGKMALKEHREVR
Subject   5170  WFKTHIPLSNLESTRARWVGKMALKEHREVR  5262

Range 2: 5125 to 5262 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 25/46(54%) 0/46(0%) Minus/Minus
Query        1  SHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAI  138
                +H  +  Q H ++PPGPG* Q+T  D+GF+PF I*AF L L NF I
Subject   5125  THLPMLFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTI  5262

Range 3: 5169 to 5258 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 24/30(80%) 0/30(0%) Minus/Minus
Query       45  TSRCSFNAIFPTLLALVDSKLLNGIWVLNH  134
                TSRCSF AI PT LALVDS+LL G+WVLNH
Subject   5169  TSRCSFKAILPTHLALVDSRLLRGMWVLNH  5258

Range 4: 5126 to 5248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 24/41(59%) 0/41(0%) Plus/Plus
Query        2  IAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RN  124
                I KL+  S NAQM+NG KP S *V W+QPGPGG  +W *++
Subject   5126  IVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KS  5248

Range 5: 5126 to 5242 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 23/39(59%) 0/39(0%) Minus/Minus
Query        2  STPSFQPSWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRN  118
                S P + P+WPWL P Y  G GF*TI HLSI T + QL N
Subject   5126  SRPFYPPTWPWLTPDYSGGCGF*TILHLSILTPSLQLHN  5242

Nucleotide Sequence (1428 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
143
286
429
572
715
858
1001
1144
1287
1428

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 11

Range 1: 4261 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1106.7 bits(2409) 0.0 474/475(100%) 0/475(0%) Plus/Plus
Query        2  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  1426
                CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQD+DCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH
Subject   4261  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDEDCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  5685

Range 2: 4300 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1033.0 bits(2248) 0.0 443/462(96%) 0/462(0%) Minus/Minus
Query       41  VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP  1426
                VLRLH+N*GNIQQPIPTRST MIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAP FCSFDLRL*KFKTFPN HEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVF+KELLGRFITTSHFTVFLQRHLSNPPGPG FQVT*WDMGF+PFLI* FRLKLLNFAI+ILAKEKH+L*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTG+VH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGA FEVTG*S*IKH IYKP ALQVVPI*L FEQPQYVTLF  QNSSIFLRIICALTRITSKRDESVTA+NKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGN+IP
Subject   4300  VLRLHKN*GNIQQPIPTRSTRMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAP*FCSFDLRL*KFKTFPNSHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPGRFQVT*WDMGFKPFLI*TFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGNVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGAFFEVTG*S*IKHWIYKPSALQVVPI*LSFEQPQYVTLFGTQNSSIFLRIICALTRITSKRDESVTADNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNNIP  5685

Range 3: 4260 to 5120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
661.3 bits(1437) 0.0 286/287(100%) 0/287(0%) Minus/Minus
Query        1  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  861
                +TFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH
Subject   4260  MTFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  5120

Range 4: 5187 to 5687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
390.5 bits(846) 0.0 166/167(99%) 0/167(0%) Minus/Minus
Query      928  QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1428
                QC*DF+KIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH
Subject   5187  QC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  5687

Range 5: 4349 to 5686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1000.0 bits(2176) 0.0 432/446(97%) 0/446(0%) Minus/Minus
Query       90  SVETS*KLGQHPATNPYKIYRNDXXXXXXXXXXXFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  1427
                SVETS*KLGQHPATNPYKIY+NDFLLSLHFCLLSFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRA ILQLRLEALKI*DVS*+P*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCV QRTVGSFHNHISLHGVPSTPSFQPTWPW IPSYLMGYGF*TIPHL+IQTQAPQLRN HLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWS F*SYRVILNQT DLQT GSPSCTYMT LRATSICHSV+ PK*LYLFENHMCFDKDHQQER*KRHC *QEDIDRCNQEGIAELHQRSRNDQP
Subject   4349  SVETS*KLGQHPATNPYKIYQNDFLLSLHFCLLSFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRALILQLRLEALKI*DVS*QP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVHQRTVGSFHNHISLHGVPSTPSFQPTWPWSIPSYLMGYGF*TIPHLNIQTQAPQLRNPHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSLF*SYRVILNQTLDLQTFGSPSCTYMTFLRATSICHSVRHPK*LYLFENHMCFDKDHQQER*KRHCG*QEDIDRCNQEGIAELHQRSRNDQP  5686

Range 6: 4911 to 5687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
567.0 bits(1231) 0.0 248/259(96%) 0/259(0%) Plus/Plus
Query      652  EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL  1428
                EH+RFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKG+AFPWPR* LRS*GA*V*M K*GMV NPYPIK*LGI+QGQVGWKDGVEGTP*SEMWL*NDPTVL* TQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHG *ETS*IFKASSRSCKI+ARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSF *IL*GLVAGCCPNF+EVSTL
Subject   4911  EHYRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGHAFPWPR*GLRS*GA*V*MFK*GMV*NPYPIK*LGIDQGQVGWKDGVEGTP*SEMWL*NDPTVL**TQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGC*ETS*IFKASSRSCKIKARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFW*IL*GLVAGCCPNFYEVSTL  5687

Range 7: 4260 to 4874 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
454.7 bits(986) 0.0 197/205(96%) 0/205(0%) Plus/Plus
Query        1  V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD  615
                V*GGEGRQIKEGGLGC YL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCY Q*RFHLSCW*SLSKHI*FSKR*SYFG  TE*HIEVARR+VI*VQLGEP+VCKS+V*FKITL*LQK LHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD
Subject   4260  V*GGEGRQIKEGGLGCCYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYPQ*RFHLSCW*SLSKHI*FSKR*SYFGCRTE*HIEVARRKVI*VQLGEPKVCKSNV*FKITL*LQKRLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD  4874

Range 8: 4802 to 5578 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
563.3 bits(1223) 0.0 251/259(97%) 0/259(0%) Plus/Plus
Query      543  G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL  1319
                G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**T PV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*R CFSLAKM IAKLRSLSLN QMRNG KPISH*VTWN+PGPGGLERWR*RNTVK*DVVMKRPNSSL NTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSW LGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL
Subject   4802  G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TLPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRSLSLNVQMRNGLKPISH*VTWNRPGPGGLERWR*RNTVK*DVVMKRPNSSLMNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWLLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL  5578

Range 9: 4466 to 4759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 92/98(94%) 0/98(0%) Plus/Plus
Query      207  KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT  500
                KAHMILKKIELFW  NRVTY*GCSK SHIGTTWRA GL*I+CLIQDYPVTSK+AP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT
Subject   4466  KAHMILKKIELFWVPNRVTY*GCSKESHIGTTWRAEGL*IQCLIQDYPVTSKKAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT  4759

Range 10: 4301 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 36/37(97%) 0/37(0%) Plus/Plus
Query       42  GMSLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  152
                GM LPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY
Subject   4301  GMLLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  4411

Range 11: 5618 to 5686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 21/23(91%) 0/23(0%) Plus/Plus
Query     1359  IIPVDLVGIGCWMLP*FS*SLNT  1427
                II VDLVGIGCWMLP*F *SLNT
Subject   5618  IILVDLVGIGCWMLP*FL*SLNT  5686

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 11

Range 1: 4261 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1096.2 bits(2386) 0.0 470/475(99%) 0/475(0%) Plus/Plus
Query        2  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  1426
                CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQD+DCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSE+LSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLM EAVREFE KKASKSAATIENHSGRSCRDWLLDVALIFMKSQH
Subject   4261  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDEDCEVEELESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEKLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMHEAVREFEAKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  5685

Range 2: 4260 to 5120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
623.8 bits(1355) 0.0 273/287(95%) 0/287(0%) Minus/Minus
Query        1  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  861
                +TFSQGSP SFSS TPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAV+K**SGFPAKCDRKLSTLKPV+FTRSRLWLKRDKAVNHRRSSV*KES D+RIPP LKF+PVDSPKVSVSCFIPK*D TIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVM+PFLKLQGNLESNIGFTNLRLSKLYLYDFPSS+LNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLR+TRRHRSM*PGGNS TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH
Subject   4260  MTFSQGSPQSFSSRTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVRK**SGFPAKCDRKLSTLKPVIFTRSRLWLKRDKAVNHRRSSV*KESWDMRIPPYLKFSPVDSPKVSVSCFIPK*D*TIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMDPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSSLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRMTRRHRSM*PGGNSWTSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  5120

Range 3: 5187 to 5687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
378.6 bits(820) 0.0 161/167(96%) 0/167(0%) Minus/Minus
Query      928  QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1428
                QC*DFMK+RATSS+QSLQDLPE*FSIVAALLLAFF+SNSRTAS IRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLN SLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDS+LLNGIWVLNH
Subject   5187  QC*DFMKMRATSSSQSLQDLPE*FSIVAALLLAFFASNSRTASCIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNFSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLNH  5687

Range 4: 4300 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
934.9 bits(2034) 0.0 396/462(86%) 0/462(0%) Minus/Minus
Query       41  VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP  1426
                +LRLHEN  +IQQPIP RST MIFYCRCTFACFL LKFSHSF HQVCIVACIQW+L KESVK*K PIWLCAPQFCSF+LRL +FKTFP+ HE+GH*IITFMSWIYAFKSFTCIAQ LASSTP+F+KELLGRFITTSHFTVFLQ HLSNPPGP *FQ+T*WDMGF+PFLI AFRLK LN AI+ILA EKH+L*PRITT+L LSH FIPPNAN+E IKEVGLTGKQ+PYHILP F C*KVI+RFPSKMRQKAFHPQT +++*IKIVAKTR* CQPP IICVKG+M Y+NPS+LE+QPSRFTE KRELLHSKVGL+DFLF +A N*+GIQR L*SS*EEIMHIVENGVISK GSHG LFEVTG*S*IKH IY+PPALQVVPI*LPFEQPQYVTLFS QNSSIFLRIICALTRITSKRDESVTAN+KKT*IDVTR E*L+FIKDHAMTSL*ACNFPK+DFKGNDIP
Subject   4300  MLRLHENESDIQQPIPARSTRMIFYCRCTFACFLCLKFSHSFMHQVCIVACIQWDLRKESVK*KFPIWLCAPQFCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQFLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAILILA*EKHDL*PRITTKLFLSHSFIPPNANVEAIKEVGLTGKQIPYHILPTFRC*KVIKRFPSKMRQKAFHPQTSNIY*IKIVAKTR*GCQPPTIICVKGVMGYENPSILEIQPSRFTEGKRELLHSKVGLNDFLFLEAGN*NGIQRTL*SS*EEIMHIVENGVISKGGSHGPLFEVTG*S*IKHWIYEPPALQVVPI*LPFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANDKKT*IDVTRGE*LDFIKDHAMTSL*ACNFPKKDFKGNDIP  5685

Range 5: 4349 to 5686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
868.0 bits(1888) 0.0 381/446(85%) 0/446(0%) Minus/Minus
Query       90  SVETS*KLGQHPATNPYKIYRNDXXXXXXXXXXXFPQILAQLQASGLHCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  1427
                +VETS*K  +HPA NP KIY+NDFLLSLHFCLLS PQILAQL ASGLHCGLHSV P KGKCQVK SHMALRASILQL+LEA +I*DVS*+P* RSLNHYLYVLDICFQIFHMHCSI+RFFHT V QRTVGSFHNHISLHGVPS PSFQPTWP LIP YLMGYGF*TIPH SIQTQ PQ RN HLG  KA*PLAKDHH A PL+ LHSAQC* *+H*RSWAHREA+PLSHSP F LL+SD+AVSQQNATESFPPSN+*  LDQDCG*NEI+LSTT DHLCER+H I*ESLH *+S Q*IHR+*A*VASFQSRT RFSF +S KL WHPK PLI*LRGNHAYCGKWRNQQ+RQSW+PF*SYRVILNQT DL+TSGSPSCTYMTSLRA SICHSVQ PK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQ GIA LHQRSRNDQP
Subject   4349  NVETS*K*ERHPAANPCKIYQNDFLLSLHFCLLSLPQILAQLHASGLHCGLHSVGPSKGKCQVKISHMALRASILQLQLEASRI*DVS*QP*GRSLNHYLYVLDICFQIFHMHCSISRFFHTYVHQRTVGSFHNHISLHGVPSMPSFQPTWPLLIPDYLMGYGF*TIPHSSIQTQVPQPRNPHLGLRKA*PLAKDHHKAFPLALLHSAQC*R*SH*RSWAHREANPLSHSPHFSLLESDKAVSQQNATESFPPSNQ*YLLDQDCG*NEIRLSTTDDHLCERSHGI*ESLHT*NSAQ*IHRR*A*VASFQSRTERFSFPRSWKLEWHPKDPLI*LRGNHAYCGKWRNQQRRQSWTPF*SYRVILNQTLDLRTSGSPSCTYMTSLRAASICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQGGIAGLHQRSRNDQP  5686

Range 6: 4911 to 5687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
478.1 bits(1037) 0.0 216/259(83%) 0/259(0%) Plus/Plus
Query      652  EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL  1428
                +++ FEGGKLSVAFCWETALSL NS+K GECDKG ASR*AQLL*W Q *HWAE*R  RG+A+W*SLAKG+AF  PR* LR *G *V*ML+*GMV NPYPIK* GIN+GQVGWKDG+EGTP*SEMWL*NDPTVL* T VWKKR IEQCM*KI*KHISKT*R**FSDL HG  ETS*I +ASS SCKIEARKAIWE+FT*HFPF+G TECKPQCKPDA*SCARI*GKESKQKCSDNRKSF *IL GL AGC  +FHEVSTL
Subject   4911  KYYWFEGGKLSVAFCWETALSLSNSEKWGECDKGFASR*AQLL*WLQR*HWAE*RSARGKALW*SLAKGHAFLRPR*GLRG*GT*V*MLE*GMV*NPYPIK*SGINKGQVGWKDGIEGTP*SEMWL*NDPTVL**T*VWKKREIEQCM*KI*KHISKT*R**FSDLPHGCQETS*ILEASS*SCKIEARKAIWEIFT*HFPFEGPTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFW*ILQGLAAGCRSHFHEVSTL  5687

Range 7: 4260 to 4874 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
407.5 bits(883) 0.0 180/205(88%) 0/205(0%) Plus/Plus
Query        1  V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVD  615
                V*G EGRQIKEGGLGCRYL*SL *ESYRPKGWSLRDL**S AIP WLHRSMSSC+SQ*RFHLSCW*SLSKHI*FSKR*SYFG *TE*HIE ARREVI*VQLGEPEV KS+V*FKITL*LQKG+HDCR C*LRHFPQYA*FPLS*IKG FGCH SF+L  KENR VLLWNEATHAY R*IYW E Q WRDS+I * LSHR*S VVD
Subject   4260  V*GSEGRQIKEGGLGCRYL*SLS*ESYRPKGWSLRDL**SPAIPPWLHRSMSSCHSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEAARREVI*VQLGEPEVRKSNV*FKITL*LQKGVHDCRLC*LRHFPQYA*FPLS*IKGSFGCHSSFQLRGKENRSVLLWNEATHAYLR*IYWAEFQVWRDSHIP*LLSHR*SSVVD  4874

Range 8: 4802 to 5578 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
471.6 bits(1023) 0.0 217/259(84%) 0/259(0%) Plus/Plus
Query      543  G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL  1319
                G* SSMEGF Y M PFTQMI GG*Q YLVLATILI**   V*GWKAFCRILLGNR ITF*Q+K GRM**G CFPVSPTSLM S LALGGMK  ER+S VVILG*R CFS AKM IA+LR+LSLNA+MRNG KPISH*V WNQ GPGGLERW *RNTVK*DVVMKRPNSSL N GVEEA N*AMHVKDLKAYIQDIKVMIQ*P SW  GNVLN +SLK KLQN*GAQSHMG+FYLTLSF+R H*MQATMQT*C+KLCENL
Subject   4802  G*ISSMEGFSYPMTPFTQMIVGG*QPYLVLATILI**ILLV*GWKAFCRILLGNRFITF*QRKVGRM**GICFPVSPTSLMASTLALGGMKECERKSFVVILG*RSCFS*AKMRIARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK*DVVMKRPNSSLMNIGVEEARN*AMHVKDLKAYIQDIKVMIQ*PSSWLSGNVLNSRSLKLKLQN*GAQSHMGNFYLTLSFRRSH*MQATMQT*CMKLCENL  5578

Range 9: 4466 to 4759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.1 bits(439) 0.0 87/98(89%) 0/98(0%) Plus/Plus
Query      207  KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT  500
                KAHMILKKIELFW LNRVTY*GCSKGSHIGTTWRAGG *I+CLIQDYPVTSKR P*LP LLITPFSTICMISS*LDQR LWMP *F A +KRKS SPT
Subject   4466  KAHMILKKIELFWVLNRVTY*GCSKGSHIGTTWRAGGS*IQCLIQDYPVTSKRGP*LPPLLITPFSTICMISS*LDQRVLWMPF*FPASRKRKSFSPT  4759

Range 10: 4301 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 34/37(92%) 0/37(0%) Plus/Plus
Query       42  GMSLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  152
                GMSLPLKS LGKLQA*RLVIA*SLMK SYS LVTSIY
Subject   4301  GMSLPLKSFLGKLQA*RLVIA*SLMKSSYSPLVTSIY  4411

Range 11: 5618 to 5683 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 17/22(77%) 0/22(0%) Plus/Plus
Query     1359  IIPVDLVGIGCWMLP*FS*SLN  1424
                II VDL GIGCWM   FS*SLN
Subject   5618  IILVDLAGIGCWMSLSFS*SLN  5683

Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome

Sequence ID: KR528585.1 Length: 8595 Number of Matches: 12

Range 1: 4243 to 5667 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1071.9 bits(2333) 0.0 457/475(96%) 0/475(0%) Plus/Plus
Query        2  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  1426
                CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLD ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVSIG+NEGVREEKLCGDPWLKVMLFLGQD+DCEVEE+ESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSKVPLNASHN+N+  EAVREFE KKASKSAATIENH+GRSCRDWLLDVALIFMKSQH
Subject   4243  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDVILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQDEDCEVEEMESECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKVPLNASHNSNMFHEAVREFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQH  5667

Range 2: 4242 to 5102 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
591.2 bits(1284) 0.0 260/287(91%) 0/287(0%) Minus/Minus
Query        1  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  861
                +TF+ GSPH+FSSLTPSF PMLTLKPLKKLGSPGSKS +TFSPL AVKK * G PAKC+RKLSTLKPV+FT+S+LWLKRD+AV+H RSSV*KES D+RIPP LKF+PVDSPKVSVSCFIPK*D TIFFSSKLETRM SKGPFDLAKRKSCIL KMA*SAKAAVMEPFLKLQG+LESNIGFTNLRLSKLYLYDFPSS+LNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH
Subject   4242  MTFNHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSKSRMTFSPLLAVKKW*RGLPAKCERKLSTLKPVIFTKSKLWLKRDRAVSHLRSSV*KESWDMRIPPYLKFSPVDSPKVSVSCFIPK*D*TIFFSSKLETRMTSKGPFDLAKRKSCIL*KMA*SAKAAVMEPFLKLQGSLESNIGFTNLRLSKLYLYDFPSSSLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  5102

Range 3: 5169 to 5669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
282.4 bits(610) 0.0 126/167(75%) 0/167(0%) Minus/Minus
Query      928  QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1428
                QC DF+KIRATS++QSL DLP *FSIVAALLLAFF+SNSRTAS     L LAFSGT +RK S++NFPYG AR + AAST GFENLRRF TA+RKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V S*P  TSRCSF AI PTHLALVDS+LL G+WVLNH
Subject   5169  QCCDFIKIRATSNSQSLHDLPA*FSIVAALLLAFFASNSRTAS*NMLEL*LAFSGTLDRKESNRNFPYGLARRSLAASTWGFENLRRFRTAIRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VTS*PQRTSRCSFKAILPTHLALVDSRLLRGMWVLNH  5669

Range 4: 4282 to 5667 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
696.2 bits(1513) 0.0 311/462(67%) 0/462(0%) Minus/Minus
Query       41  VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP  1426
                VLRLH+N  NI QPIP   T MI Y  CT    L LK  H F   V I+  I W+  ++ V *+LPIWL  P F SF+L L KF+T  + H++G+*II+FM W+ AFK  TCIAQLL SST + +KELL  FITT+H  +  Q H ++PPGPG* Q+T  D+GF+PF I*AF L L NF I+IL +EKH+ *P +TTQLLL + FI  NAN++  +EV LT +QV Y ILP F C +V++ F SK+ +K FHPQ  D+H*I+IVAK R*S +PP IICVKGIM Y+NP +LE+QP RFTE KRELLHSKVGL+DFLF +A N*+ IQR L*SS*++IMHIV+NGVISKSGSHGA FEVTG*S*IKHRIY+PPALQVVPI*LPFEQPQYVTLFS QNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTR E*LNFIKDHAMTSL*ACNFPK++FKG++IP
Subject   4282  VLRLHKNQSNI*QPIPA*PTCMILYSCCTLTSLLRLKLPHCFMKHVGIMTSI*WDFRQKGV**ELPIWLGPP*FGSFNLGLRKFETLSDSHKEGY*IISFMPWVNAFKPLTCIAQLLTSSTSMLIKELLSHFITTTHLPMLFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHDF*PWVTTQLLLPNTFILSNANVKATEEVRLTWEQVSYDILPTFGCQEVVKGFASKV*EKTFHPQARDIH*IQIVAKAR*SSEPPPIICVKGIMGYENPPILEIQPCRFTEGKRELLHSKVGLNDFLFLEAGN*NDIQRTL*SS*KKIMHIVKNGVISKSGSHGAFFEVTG*S*IKHRIYEPPALQVVPI*LPFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRGE*LNFIKDHAMTSL*ACNFPKKNFKGDNIP  5667

Range 5: 4242 to 4850 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
386.9 bits(838) 0.0 175/203(86%) 0/203(0%) Plus/Plus
Query        1  V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSHR*SPV  609
                V*GGEGRQIKEGGLGC +L*S  *ESYRPKGWSLRDL**SSAIP WLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFG *TE*HIE ARREVI*VQLGEPEV KSDV*FK TL*LQK LHDCRFC*LRHF QYA*F  S*IKG FGCH SF+L  KENR VLLWNEATHAY R*IY  E Q W DS+I *FLSHR*S V
Subject   4242  V*GGEGRQIKEGGLGCCHL*SFS*ESYRPKGWSLRDL**SSAIPPWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEAARREVI*VQLGEPEVRKSDV*FKTTL*LQKRLHDCRFC*LRHFSQYA*FSFS*IKGSFGCHSSFQLRGKENRSVLLWNEATHAYLR*IYRAEFQVWGDSHIP*FLSHR*SEV  4850

Range 6: 4893 to 5477 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 101/195(52%) 0/195(0%) Plus/Plus
Query      652  EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEV  1236
                E+H  EGGK S+  CW+T L L +S+K GEC   LA R*A LL W   *HW E*R   GE VW* + K +AFP  R* L S*   V MLK* MV NP+P +* G+NQGQVG  +G+E      +WL*+D T+L*    W   A EQCM*++*KH+ K *R *F++L +G  + S IF+A   SC+  A +AIWEV
Subject   4893  EYHGLEGGKFSLTLCWQTPLPLLDSQKWGECHTRLAPR*A*LLQWL*R*HWKE*RC*GGEVVW*PMVKSHAFPGSR*GL*S*RDGVRMLK*RMV*NPHPPE*SGVNQGQVGG*NGLERASGGALWL*SDSTIL**A*RWNW*ATEQCM*EV*KHLPKA*RK*FNNLPYGCPKASQIFEAPG*SCQTTAGQAIWEV  5477

Range 7: 5538 to 5669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 21/44(48%) 0/44(0%) Plus/Plus
Query     1297  A*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL  1428
                +*S A +*G+E   +CS+ R+S R*++ GL   CC +F+EV+TL
Subject   5538  S*SSAGV*GEEG**ECSNYRESCR*VMQGLAVRCCSDFYEVATL  5669

Range 8: 4331 to 5482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
579.3 bits(1258) 0.0 262/384(68%) 0/384(0%) Minus/Minus
Query       90  VKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  1241
                + TSHMA  A + QL+  A KI*D   +P* R LNH+LY L  CFQ  HMHCS+A  FH    QR V S HNH +     S P + PTWPWL P Y  G GF*TI HLSI T + QL N HL  GKA* L   HHT SP   LHS QC* *+H*RS AH  AS + HSP F L +S + V QQ+  E+FPPS+ * SL+ +CG*+EI+   T DHLCERNH I*ES H *+S  *IHR+*A*VASFQSRT RFSF +S KL  HPK PLI*L+ NHAYC KWRNQQKRQSWS F*SYRV+LNQTSDL+TSGSPSCTYMTSLRA SICHSVQ PK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQ GIAELHQRSRNDQP
Subject   4331  IGTSHMAWPAVVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHLYAHQRIVESLHNHNAPPDALSRPFYPPTWPWLTPDYSGGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHTTSPP*HLHSFQC*R*SH*RS*AHLGASLV*HSPHFWLSRSGKGVCQQSVRENFPPSSP*YSLNPNCG*SEIEQ*ATSDHLCERNHGI*ESPHT*NSAL*IHRR*A*VASFQSRTERFSFPRSWKLE*HPKDPLI*LKENHAYCEKWRNQQKRQSWSLF*SYRVVLNQTSDLRTSGSPSCTYMTSLRAASICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQGGIAELHQRSRNDQP  5482

Range 9: 5600 to 5668 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 12/23(52%) 0/23(0%) Minus/Minus
Query     1359  SVETS*KLGQHPATNPYKIYRND  1427
                SV TS*K  QH   NP   Y +D
Subject   5600  SVATS*KSEQHLTANPCMTYLHD  5668

Range 10: 4784 to 5560 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.2 bits(568) 0.0 142/259(55%) 0/259(0%) Plus/Plus
Query      543  G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLCENL  1319
                G* SSM GF Y MIPFTQMI GG  LYL LATI I** S  *GWK F   LL N   T *Q K GRM   TC  VS TS +   LAL  MK   RRSCVV  G*+ CFS  KM I KL+  S NAQM+NG KP S *V W+QPGPGG  +W *++  +  VVMK  N+SL +  VE  SN*AMHV+ LKA+ Q IK MIQ*P  W   +V NF+S + KL N G  SHMGS Y T    + H*M   + T  +K C +L
Subject   4784  G*ISSMGGFSYPMIPFTQMIGGGSLLYLALATIWI**ISRA*GWKVFSHTLLANPFTTS*QPKVGRMSYETCSQVSLTSSVALTLALERMKVLGRRSCVVTHG*KSCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIEVELVSN*AMHVRGLKAFTQGIKEMIQ*PSLWLSESVSNFRSPRLKLPNYGGPSHMGSSY*TPFCLKSH*MLVIIPTCFMKQCGSL  5560

Range 11: 4448 to 4741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 85/98(87%) 0/98(0%) Plus/Plus
Query      207  KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT  500
                KAHMILKKIELFW LNRVTY*GCSKGSHIGTTWRAGG *IRCLIQDYPVTSK+AP*LPLLLITPF TICMI  *LDQR LWM  *F A +KRKS SPT
Subject   4448  KAHMILKKIELFWVLNRVTY*GCSKGSHIGTTWRAGGS*IRCLIQDYPVTSKKAP*LPLLLITPFFTICMIFF*LDQRVLWMSF*FPASRKRKSFSPT  4741

Range 12: 4283 to 4393 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 32/37(86%) 0/37(0%) Plus/Plus
Query       42  GMSLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  152
                GM  PLK  LGKLQA*RLVIA*SLMKFSYS LVTSIY
Subject   4283  GMLSPLKFFLGKLQA*RLVIA*SLMKFSYSPLVTSIY  4393

Grapevine rupestris stem pitting associated virus isolate TEMP BR replicase, 24.4 kDa protein, 12.8 kDa protein, 8.4 kDa protein, and 28 kDa protein genes, complete cds

Sequence ID: KX925556.1 Length: 8700 Number of Matches: 12

Range 1: 4250 to 5674 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1064.6 bits(2317) 0.0 450/475(95%) 0/475(0%) Plus/Plus
Query        2  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  1426
                CKV KAGKSKKEGWDVVTFEVFLRKV+ LKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVS+G+NEG+REEKLCGDPWLKVMLFLGQD+DCEVEE+E ECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCG+E TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSKVPLNASHN+N++ EAVREFE KKASKSAATIENHSGRSCRDWLLDVALIFMKSQH
Subject   4250  CKVAKAGKSKKEGWDVVTFEVFLRKVSSLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSLGKNEGIREEKLCGDPWLKVMLFLGQDEDCEVEEMEMECSNEEWFKTHIPLSNLESTRARWVGKMALKEHREVRCGHEVTQQFFDEHRGGAGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKVPLNASHNSNMLNEAVREFEAKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  5674

Range 2: 4252 to 5109 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
543.6 bits(1180) 0.0 236/286(83%) 0/286(0%) Minus/Minus
Query        4  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL  861
                ITFS GSPH+FSSL PSF P LTLKPLKKLGSPGS+S +TFSPL AVKK * G PAKC+RKLSTLKPVMFT+S+LWLKRDKAV+HRRSSV*KESCDIRIPPCLKF+PVDSP V VSCFIPK*DWTIFFSSKLETRMASKGPFDLA+RKSCILWK+A*SAKAAV+EPFLK  GNL+SNIGFT   LS LYLY FPSS+L++SLCSAP+IA SF ESYVL  GSPA EMKASLR+T +HRS+ PGGNS*TSSKITQ*PAF+  TFLRKTSKVTTS PSFFDLPA  TL
Subject   4252  ITFSHGSPHNFSSLIPSFLPRLTLKPLKKLGSPGSRSRMTFSPLLAVKKW*RGLPAKCERKLSTLKPVMFTKSKLWLKRDKAVSHRRSSV*KESCDIRIPPCLKFSPVDSPNVRVSCFIPK*DWTIFFSSKLETRMASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGNLDSNIGFTKRLLSMLYLYVFPSSSLSISLCSAPRIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNS*TSSKITQ*PAFKLETFLRKTSKVTTSHPSFFDLPALATL  5109

Range 3: 5176 to 5676 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.5 bits(632) 0.0 131/167(78%) 0/167(0%) Minus/Minus
Query      928  QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1428
                QC DF+KIRATS++QSL DLPE FSIVAALLLAFF+SNS TAS     L LAFSGT +RK SSKNFPYGFARLN AAST GFENLRRF TAMRKV ES PLCLG MLSNLSHALL+CS  P LCSSKNC V S P  TSRCSF AI PTHLALVDSKLL G+WVLNH
Subject   5176  QCCDFIKIRATSNSQSLHDLPEWFSIVAALLLAFFASNSLTASLSMLEL*LAFSGTLDRKESSKNFPYGFARLNLAASTWGFENLRRFRTAMRKVMESFPLCLG*MLSNLSHALLSCSPAPPLCSSKNCCVTSWPQRTSRCSFKAILPTHLALVDSKLLKGMWVLNH  5676

Range 4: 4289 to 5674 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
545.0 bits(1183) 0.0 253/462(55%) 0/462(0%) Minus/Minus
Query       41  VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP  1426
                +L LH+N* NIQQPIP     M+ Y  CT   FL  +  H     V IV  I WNL +E ++*+LPIW C PQF  F+L L*KF+TF N HE+G+ II+FM W+ AFKSFTCIAQLL S+T V +KELL   + T+H  +    H ++PPG G* Q+ * D+GFEPF I*AF   L NF I+IL +EKHN  P IT QLLLS+  I   A+IETI+EV LT KQV Y IL  F C KV++ F SKM +K FHPQT +V+ I+I+A+ R*S +PP+I+ +KGIM*YK+  M EVQPS FT+ K EL H KVGLD FL  K  N*+GIQ   *   EE+MHI+E+ +ISK  SH   FEVT *S  KH ++K PA  VVP+ L F+Q +Y+TL S+QN +I L IICAL  ITSK DES+TA +K T*ID++R + LN I++H MT L   NF KE+ K + IP
Subject   4289  ML*LHKN*SNIQQPIPA*PA*MVLYSCCTLTGFLCFELPHCLIKHVGIVTGI*WNLRQEGIQ*ELPIWFCPPQFGRFNLGL*KFETFSNSHEEGYGIISFMPWVNAFKSFTCIAQLLTSTTSVLIKELLRYLMATAHLPMLF*GHFAHPPGSG*LQIA*GDVGFEPFFI*AFHFHLFNFTILILTQEKHNFQPWITAQLLLSNSLIFTKADIETIEEVRLTWKQVSYDILSTFSCQKVVKGFASKM*EKTFHPQTCNVYQIQIMAEAR*SSKPPSIVSMKGIM*YKDSPMFEVQPS*FTKCKSELFHPKVGLDYFLLLKTGN*NGIQGPF*PRQEEVMHIMEDCIISKGSSH*TFFEVTW*SRFKHWVHKTPAFYVVPVRLSFKQSEYITLLSSQNCTILL*IICALAWITSK*DESITAYDK*T*IDISRGKQLNLIENHTMTGLQTRNFSKENLKSHHIP  5674

Range 5: 4900 to 5676 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
257.2 bits(555) 0.0 133/259(51%) 0/259(0%) Plus/Plus
Query      652  EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL  1428
                +H+RFEGGK S+ FCW+T L LF+S K  EC    ASR*A LL WFQC  W +*   RGE V *S+A+ YAFP  R* L S*     MLK* MVQNP+P+K  G+NQ QVG ++G++      +W * +  +L*  Q W   A EQCM*KI*KH+ K *R *F +L HG  +TS IFKA   S +IEA K IWEV T   P  GST+C+ Q +   *    +  KES+ +CS+ R+ FR ++ GL  GCC NF+EV+TL
Subject   4900  KHYRFEGGKFSLTFCWQTPLPLFDS*KWRECHTRPASR*A*LLQWFQCQPW*K*GN*RGEVVR*SMAESYAFPGSR*GL*S*RDGNGMLK*RMVQNPHPLKQFGVNQSQVGGQNGLKRASGGALWP*GNAAIL**AQRWCW*AAEQCM*KI*KHLPKA*RK*FHNLPHGCSKTSQIFKAPG*SGQIEAGKTIWEVLTGFLPV*GSTKCQSQFQHA**GSEGVRSKESQ*ECSNYREPFRQVMQGLAVGCCSNFYEVTTL  5676

Range 6: 4261 to 4842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.9 bits(430) 0.0 95/194(49%) 0/194(0%) Plus/Plus
Query       13  EGRQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSH  594
                + RQIKEG +GC   *  P*+S+  +G SL D  * SA+  W++RSM +C++Q* FHL+CW*S+ +HI*F+K     G * E*+ + A R+ + VQ  +   C+ +V*  IT+ LQK  +DC  C*L + P YA* P   +K   GCH SF+ * +EN PVLLW+E  H+Y  *I W ELQ W + YIT*FLS+
Subject   4261  QSRQIKEGRVGCGDF*GFP*KSF*FEGRSLCDFR*GSAVSPWIYRSMFTCHTQ*CFHLTCW*SMPEHI*FTKGSCNSGS*AE*YTQTA*RKDVQVQHRKQAFCEPNV*I*ITMSLQKRFNDCCLC*LCNLP*YA*LPPGEVKRALGCHSSFQF*GEENSPVLLWDETAHSYIW*INWAELQTWGNPYIT*FLSY  4842

Range 7: 4338 to 5534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
387.3 bits(839) 0.0 205/399(51%) 0/399(0%) Minus/Minus
Query       90  HCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPKGPLI*LRGNHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  1286
                +C  H VEP  G+  V+TSHM L ASI  L+  ALKI*DV  +P* R  NH+LY L  CFQIFHMHCS A   H C  QR     H H +       P   PTW WL P+ L G GF*TI HLSI   + QL N HL  GKA*  A DH T SPL   H  Q *H*NH*RS AH EA  + HS  F L KS + V QQN  E+FPPSN *C  + + G*+EIK   T D   ERNHVI*   H *SS Q IH+ * *  S QSRTG FS  Q+ KL WHP+  L    G+HAY G+  NQQ++QS + F*S  VI  QT   Q +    CT  + L+A  + HS Q P+    F NHMC   DHQQ R*K HC *Q +IDR  Q   AE H++S ND+P
Subject   4338  NCDWHLVEP*TGRNPVRTSHMVLPASIWPLQPGALKI*DVFEQP*GRLWNHFLYALGKCFQIFHMHCSAAHQHHLCAHQRIAALPHGHSAPPDALLRPFCPPTWLWLTPNCLRGCGF*TILHLSIPFPSLQLHNPHLDPGKA*LSAMDHRTTSPL*FPHFYQG*H*NH*RS*AHLEAGLV*HSLHF*LSKSGKGVCQQNVRENFPPSNL*CLPNPNYG*SEIKQ*ATVDRQYERNHVI*GFPHV*SSAQLIHQM*E*AVSSQSRTGLFSSPQNWKLEWHPRALLTSPGGSHAYYGRLHNQQRQQSLNLF*SDMVI*IQTLGSQNACFLCCTCTSFLQAV*VYHSAQLPELHDPFVNHMCSGMDHQQVR*KHHCV*QVNIDRYIQGETAEPHRKSHNDRP  5534

Range 8: 5628 to 5675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 11/16(69%) 0/16(0%) Minus/Minus
Query     1380  SVETS*KLGQHPATNP  1427
                +V TS*KL QHP  NP
Subject   5628  NVVTS*KLEQHPTANP  5675

Range 9: 4791 to 5540 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
269.6 bits(582) 0.0 141/250(56%) 0/250(0%) Plus/Plus
Query      543  G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT  1292
                G*TS+M   LYHMIPF   I GG  LYL  A I I *T  V*GWK F  ILL N   TF*Q K  RM   TCF VS TS MVSM AL  M+  ERRSC VI G*+LCFS  KM I KL+    NAQM+NGSKP S *  W+QP PGG  +W *++  +  V M+  ++SL +T V   S+*AMHVKDLKA+ Q IK MI *P SW   NV NFQS + K  N*G Q+HMGS Y   S  RFH*M  T+ T
Subject   4791  G*TSNMGESLYHMIPFILTIDGGLLLYLASAIIWIW*TLQV*GWKVFSHILLANPFTTF*QLKVERMSYETCFQVSLTSSMVSMSALVKMRELERRSCAVIHG*KLCFSWVKMRIVKLKRWKWNAQMKNGSKPTSP*AIWSQPEPGGWAKWP*KSIGRCAVAMR*RSNSLMSTEVVLVSS*AMHVKDLKAFTQGIKEMIP*PSSWLFENVSNFQSPRLKRPN*GGQNHMGSSYWIPSCLRFH*MPVTIPT  5540

Range 10: 4455 to 4748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 53/98(54%) 0/98(0%) Plus/Plus
Query      207  KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT  500
                +AHMI K+I  FW L+RV Y  C K    GTT +AG L* +CL  DY VTSK+  *L  LLI   S ICM SS   Q+  WMP *F  L++RK SSPT
Subject   4455  RAHMIHKRIVQFWELSRVIYSDCLKERRTGTT*KAGVL*TQCLNLDYHVTSKKVQ*LLPLLIMQSSIICMTSSWRGQKGPWMPF*FPVLRRRK*SSPT  4748

Range 11: 5628 to 5672 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/15(80%) 0/15(0%) Plus/Plus
Query     1380  GIGCWMLP*FS*SLN  1424
                GIGCWML *F *S N
Subject   5628  GIGCWMLL*FL*SHN  5672

Range 12: 4290 to 4400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 18/37(49%) 0/37(0%) Plus/Plus
Query       42  GMSLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  152
                GM   L+ SL K   *R VI *  M+FS   L  SIY
Subject   4290  GMW*LLRFSLEKFLV*RPVIV*FSMRFSCFPLDISIY  4400

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 13

Range 1: 4261 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1061.8 bits(2311) 0.0 450/475(95%) 0/475(0%) Plus/Plus
Query        2  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGRNEGVREEKLCGDPWLKVMLFLGQDDDXXXXXXXXXXXXXXWFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  1426
                CKV KAGKSKKEGWDVVTFEVFLRKV+GLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDIL+LLEGK+YRYN+ESRRFVNPMF+SRLPC FKKGSMTAAFADYAIFHNMHDFLLARSKGPLDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIG+NEGVREEKLCGDPWLKVMLFLGQD+DCEVEE+E ECSNEEWFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSKVPLNA+HN+N+  EAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH
Subject   4261  CKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILKLLEGKTYRYNIESRRFVNPMFESRLPCLFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQDEDCEVEEMEEECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEVTQQFFDEHRGGAGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKVPLNANHNSNMFNEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQH  5685

Range 2: 4263 to 5120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
533.5 bits(1158) 0.0 233/286(81%) 0/286(0%) Minus/Minus
Query        4  ITFSQGSPHSFSSLTPSFRPMLTLKPLKKLGSPGSKSLITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVSCFIPK*DWTIFFSSKLETRMASKGPFDLAKRKSCILWKMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL  861
                ITFS GSPH+FSSLTPSF PMLTLKPLKKLGSPGS+S +TFSPL AVKK * G PAKC+RKLSTLKPVMFT+S+LWLKRDKAV+HRRSSV*KESCD+RIPP LKFNPVDSP V VSCFIPK*DWTIFFSSKLETR ASKGPFDLA+RKSCIL K+A*SAKAAV+EPFLK  G+L+SNIGFT   LS LYLY  PSS+L+MSLCSAP+IA SF ESYVL  GSPA EMKASLR+T +HRS+ PGGN+*TSSKITQ PAF+P TFLRKTSKVTTS PSFFDLPA  TL
Subject   4263  ITFSHGSPHNFSSLTPSFFPMLTLKPLKKLGSPGSRSRMTFSPLLAVKKW*RGLPAKCERKLSTLKPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVRVSCFIPK*DWTIFFSSKLETRTASKGPFDLARRKSCIL*KIA*SAKAAVIEPFLKRHGSLDSNIGFTKRLLSMLYLYVLPSSSLSMSLCSAPRIARSFCESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQWPAFKPETFLRKTSKVTTSHPSFFDLPALATL  5120

Range 3: 5187 to 5687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
286.1 bits(618) 0.0 130/167(78%) 0/167(0%) Minus/Minus
Query      928  QC*DFMKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  1428
                QC DFMK+RATS++QSL DLPE FSIVAALLLAFFSSNSRTAS     L LAFSGT +RK SSKNFPYGFARL+ AAST GFEN RRF TAMR V ES PLCLG MLSNLSHALL+CS  P LCSSKNC V S*P  TSR SF AI PTHLALVDSKLL G+WVLNH
Subject   5187  QCCDFMKMRATSNSQSLHDLPEWFSIVAALLLAFFSSNSRTASLNILEL*LAFSGTLDRKESSKNFPYGFARLSLAASTWGFENFRRFRTAMRNVMESFPLCLG*MLSNLSHALLSCSPAPPLCSSKNC*VTS*PQRTSRYSFKAILPTHLALVDSKLLKGMWVLNH  5687

Range 4: 4300 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
534.9 bits(1161) 0.0 246/462(53%) 0/462(0%) Minus/Minus
Query       41  VLRLHEN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFCSFDLRL*KFKTFPNGHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFVKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFEPFLI*AFRLKLLNFAIIILAKEKHNL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHILPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRELLHSKVGLDDFLFFKA*N*DGIQRAL*SS*EEIMHIVENGVISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LPFEQPQYVTLFSAQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNDIP  1426
                +LRLHEN  NIQQPIPT    M+ Y RCT   F FL+  H     + IV  I WNL +E ++*+LPIW C PQF  F+L L*KF T  N HE+ + II+FM W+ AFKSFTCI QLL S+T V +KELL   I T+H  +    HL++PPG G*  + * ++GFEPF I*AF   L NF ++IL +EKHN  P +TTQLLLS+  I PNA+IETI+EV LT KQV Y ILP F C*K+++RF SKM +K FHPQT DV+ I+I+A+ R S +PP+++ +KG+M*Y+N  + E+QPS  T+ + ELLH KVGLD FL  KA N*+ IQ       E++MHIV+N +ISKS SH  LFE T *S  KH ++K  A  VVPI L F+  +YVTL S+QN  I L I+CAL  IT K +ES+T  +K+T*ID++R + LN I+++ M SL   NF KE+ K + IP
Subject   4300  MLRLHENESNIQQPIPT*PA*MVLYSRCTLTGFFFLELPHCLIEHIGIVIGI*WNLRQERIQ*ELPIWFCPPQFGCFNLGL*KF*TLSNSHEECYGIISFMPWVNAFKSFTCITQLLTSTTSVLIKELLSYLIATAHLPILF*GHLTHPPGSG*L*IA*GNVGFEPFFI*AFLFHLFNFTVLILTQEKHNFQPWVTTQLLLSNSLIFPNADIETIEEVRLTWKQVSYDILPTFSC*KMVKRFTSKM*EKTFHPQTCDVYQIQIMAEARQSSKPPSVVSMKGVM*YENSPIFEIQPS*LTKCESELLHPKVGLDYFLLLKAGN*NSIQGTFRPCQEKVMHIVKNCIISKSSSH*TLFEETW*SRFKHWVHKTSAFYVVPIRLAFK*FEYVTLLSSQNCPILL*IVCALAWITGK*NESITTYDKQT*IDISRGKQLNLIENYTMASLQTRNFSKENLKSHYIP  5685

Range 5: 4911 to 5687 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
268.7 bits(580) 0.0 135/259(52%) 0/259(0%) Plus/Plus
Query      652  EHHRFEGGKLSVAFCWETALSLFNSKKRGECDKGLASR*AQLL*WFQC*HWAE*RGERGEAVW*SLAKGYAFPWPR**LRS*GA*V*MLK*GMVQNPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RTQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGR*ETS*IFKASSRSCKIEARKAIWEVFT*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFHEVSTL  1428
                +HHRFEGGK S+ FCW T+L  FNS K GEC    ASR*A LL WFQC HW +*   RGE VW* +A+ YAFP  R* L S*     MLK* MVQNP+ +K   +NQ QVG  DG++      +WL* +  +L*  Q W   A E CM*KI*KH+ K *R *F ++ HG  + S IFKA   S + EA K IWEV T  FP  GST+C+ Q +   *  A + GK+S+ +CSD R+ FR ++*GL  GCC +FHEV+ L
Subject   4911  KHHRFEGGKFSLTFCW*TSLPFFNS*KWGECHTRPASR*A*LLQWFQCQHWEK*GS*RGEVVW*PMAESYAFPGSR*GL*S*RDGRGMLK*RMVQNPHSLKQFRVNQSQVGG*DGLKRVSGGALWL*GNSAIL**AQRWCW*ATE*CM*KI*KHLPKA*RK*FHNIPHGCSKASKIFKAPG*SSQTEAGKTIWEVLTGFFPV*GSTKCQSQFQYVQ*GSAGVRGKKSQ*ECSDYREPFRQVM*GLAVGCCSHFHEVAAL  5687

Range 6: 4278 to 4853 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 88/192(46%) 0/192(0%) Plus/Plus
Query       19  RQIKEGGLGCRYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGR*TE*HIEVARREVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*LRHFPQYA*FPLS*IKGPFGCHPSFKL*RKENRPVLLWNEATHAYFR*IYWVELQAWRDSYIT*FLSH  594
                RQIKEG +GC   *  P*+S+  +GW L +  * S +  W++RSM +C++ * FH +C *S+ +HI F+K     G * E*H +   R+ +*VQ  +   C+ +V*   T+ LQKG +DC FC*L +F QYA*     ++   GC  SF+L* +EN PVLLW+EA H++  *+ WVE Q W +S+IT* LS+
Subject   4278  RQIKEGRVGCSDF*GFP*KSFWFEGWPLCNFR*GSVVSPWIYRSMFACHT**CFHFTCR*SMPEHIRFTKGSGNSGS*AE*HTQTT*RQDV*VQHRKQTFCEPNV*I*TTMSLQKGFNDCCFC*LCNFSQYA*LSPGKVERSLGCCSSFQL*GEENSPVLLWDEAAHSHIW*VNWVEFQKWGNSHIT*LLSY  4853

Range 7: 4703 to 5545 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
277.8 bits(600) 0.0 145/281(52%) 0/281(0%) Minus/Minus
Query      444  HCGLHSVEPLKGKCQVKTSHMALRASILQLRLEALKI*DVS*RP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVRQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNHHLGQGKA*PLAKDHHTASPLSPLHSAQC*H*NH*RSWAHREASPLSHSPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*VASFQSRTGRFSFLQSLKLGWHPK  1286
                +C  H VEP  GK  V+TSHM L AS+  L+  ALKI D   +P*    NH+LY L  CFQIFHMH S+A   H C  QR     H+H +       PS+ PTW WL  + L   GF*TI HLSI   + QL + HL  GKA*  A  HHT SPL   H +QC*H*NH*RS AH EA  + HSP F LLK+ + V QQN  E+FPPSN *C  + + G*+E K   T     ER+HVI*E  H *+STQ  H+ * * AS QSRTG FS  QS KL  HP+
Subject   4703  NCDWHLVEP*TGKNPVRTSHMVLPASVWLLQPGALKILDAFEQP*GMLWNHFLYALGKCFQIFHMHYSVAHQHHLCAHQRIAELPHSHSAPPDTLLRPSYPPTWLWLTLNCLRECGF*TILHLSIPLPSLQLHSPHLDPGKA*LSAMGHHTTSPL*LPHFSQC*H*NH*RS*AHLEAGLV*HSPHF*LLKNGKEVYQQNVRENFPPSNL*CLPNPNYG*SETKQ*ATVGRQYERSHVI*EFPHF*NSTQLTHQM*E*AASSQSRTGLFSSPQSWKLEQHPR  5545

Range 8: 4349 to 4678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 48/110(44%) 0/110(0%) Minus/Minus
Query       90  NHAYCGKWRNQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTSLRATSICHSVQRPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  419
                +HAYC K  NQQK+QS +PF*   V+  QT   Q      CTY + L+   +CHS Q P+    F N MC   DH+Q +*K H  *Q +IDR  Q    E H++  N QP
Subject   4349  SHAYCEKLHNQQKQQSLNPF*RDMVV*IQTLGSQNVCFLCCTYTSCLQVV*VCHSAQLPELPDPFVNRMCSGMDHRQVK*KHHYV*QANIDRYIQGETTEPHRKLHNGQP  4678

Range 9: 5636 to 5677 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 10/14(71%) 0/14(0%) Minus/Minus
Query     1377  TS*KLGQHPATNPY  1418
                TS*K  QHP  NPY
Subject   5636  TS*K*EQHPTANPY  5677

Range 10: 4802 to 5569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 136/256(53%) 0/256(0%) Plus/Plus
Query      543  G*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGRM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RLCFSLAKMMIAKLRSLSLNAQMRNGSKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLTNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWPLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRFH*MQATMQT*CLKLC  1310
                G* S M  F YHM PF     GG  L L  A I I *TS V*GWK F  ILL N    F*Q K GRM   TCF VS TS MVSM ALG M+  ERRSCVV  G*+LCFS  KM   KL+    NAQM+NGSKP   *   +QP PGG  RW *++  +  V M+  ++SL +T V   SN* MHVKDLKA+ Q IK MI *  SW   +V NFQS + K  N*G Q+HMGS Y  LS  RFH*M  T+    ++ C
Subject   4802  G*ISKMGEFSYHMTPFILTTDGGLLLCLASAIIWIW*TSQV*GWKVFSHILLVNLFTIF*QLKVGRMSYETCFQVSLTSSMVSMSALGKMRELERRSCVVTHG*KLCFSWVKMRTVKLKRWKRNAQMKNGSKPTFP*AI*SQPEPGGWVRWP*KSIGRCAVAMR*LSNSLMSTEVVLVSN*VMHVKDLKAFTQGIKEMIP*HSSWLFESV*NFQSPRLKQPN*GGQNHMGSSYWILSCLRFH*MPITIPICSMRQC  5569

Range 11: 4466 to 4759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 52/98(53%) 0/98(0%) Plus/Plus
Query      207  KAHMILKKIELFWALNRVTY*GCSKGSHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLITPFSTICMISS*LDQRALWMPS*FQALKKRKSSSPT  500
                +AH I K+I  FW L+RVTY    K   IGTT +A  L* +CL  DY V+SKR  *L LLLI  F TICM  S   ++  WM  *F AL++RK SSPT
Subject   4466  RAHTIHKRIGQFWELSRVTYSNYLKARRIGTT*KADVL*TQCLNLDYHVSSKRVQ*LLLLLIMQFFTICMTFSWQGRKVPWMLF*FPALRRRK*SSPT  4759

Range 12: 5636 to 5677 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query     1377  VGIGCWMLP*FS*S  1418
                VGIGCWML  FS*S
Subject   5636  VGIGCWMLLSFS*S  5677

Range 13: 4316 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 16/32(50%) 0/32(0%) Plus/Plus
Query       57  LKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  152
                L+ SL K   *RL I *  M+FS   L  SIY
Subject   4316  LRFSLEKFLV*RLAIV*FSMRFSCFPLDISIY  4411

Nucleotide Sequence (106 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
11
22
33
44
55
66
77
88
99
106

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 3331 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 33/35(94%) 0/35(0%) Minus/Minus
Query        2  IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQTV  106
                IF+KLLPYGWARKS INW*FTFHERPYSCLQSQTV
Subject   3331  IFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTV  3435

Range 2: 3332 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 33/34(97%) 0/34(0%) Plus/Plus
Query        3  TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK  104
                TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL K
Subject   3332  TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVK  3433

Range 3: 3330 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(165) 0.0 33/35(94%) 0/35(0%) Minus/Minus
Query        1  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  105
                FSPSCFRMVG ERA STGDSLSTNDLIPAFKAKPS
Subject   3330  FSPSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPS  3434

Range 4: 3332 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 31/34(91%) 0/34(0%) Minus/Minus
Query        3  FLQVASVWLGSKELNQLVIHFPRTTLFLPSKPNR  104
                F QVASVWLG KEL+QLVIHFPRTTLFLPSKPNR
Subject   3332  FHQVASVWLGPKELDQLVIHFPRTTLFLPSKPNR  3433

Range 5: 3330 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 32/35(91%) 0/35(0%) Plus/Plus
Query        1  RRFGFEGRNKVVRGK*ITS*FSSFEPNHTEATWRK  105
                RRFGFEGRNKVVRGK*ITS* SSF PNHTEATW K
Subject   3330  RRFGFEGRNKVVRGK*ITS*SSSFGPNHTEATW*K  3434

Range 6: 3331 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.7 bits(160) 0.0 33/35(94%) 0/35(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  106
                DGLALKAGIRSFVESESPVD ALS PTIRKQLGEN
Subject   3331  DGLALKAGIRSFVESESPVDPALSGPTIRKQLGEN  3435

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 3330 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(161) 0.0 31/35(89%) 0/35(0%) Minus/Minus
Query        1  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  105
                FSPSCFR+VG ERA STGDSLSTNDLIPAFKA+PS
Subject   3330  FSPSCFRIVGFERAGSTGDSLSTNDLIPAFKARPS  3434

Range 2: 3331 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.1 bits(161) 0.0 33/35(94%) 0/35(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  106
                DGLALKAGIRSFVESESPVD ALS+PTIRKQLGEN
Subject   3331  DGLALKAGIRSFVESESPVDPALSNPTIRKQLGEN  3435

Range 3: 3331 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 25/35(71%) 0/35(0%) Minus/Minus
Query        2  IFSKLLPYGWARKS*INW*FTFHERPYSCLQSQTV  106
                IF+KLLPY W  KS IN *FTFH+RPYS LQS T+
Subject   3331  IFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS*TI  3435

Range 4: 3341 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 24/31(77%) 0/31(0%) Plus/Plus
Query       12  L*RQE*GRSWKVNHQLIQLFRAQPYGSNLEK  104
                L*R+E*GR WKVNH+LIQLF+ Q YGSNL K
Subject   3341  L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVK  3433

Range 5: 3342 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 24/31(77%) 0/31(0%) Plus/Plus
Query       13  FEGRNKVVRGK*ITS*FSSFEPNHTEATWRK  105
                FEG NKVV GK*IT * SSF+PN+TEATW K
Subject   3342  FEGGNKVVCGK*ITG*SSSFKPNYTEATW*K  3434

Range 6: 3341 to 3433 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 24/31(77%) 0/31(0%) Minus/Minus
Query       12  FLQVASVWLGSKELNQLVIHFPRTTLFLPSK  104
                F QVASV LG KEL+Q VIHFP+TTLF PSK
Subject   3341  FHQVASV*LGLKELDQPVIHFPQTTLFPPSK  3433

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 2

Range 1: 3330 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(136) 0.0 25/35(71%) 0/35(0%) Minus/Minus
Query        1  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  105
                FSPSC  M+GLE+ EST DSLSTN+ +PAFKA PS
Subject   3330  FSPSCLEMIGLEKVESTNDSLSTNERMPAFKASPS  3434

Range 2: 3331 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.1 bits(136) 0.0 29/35(83%) 0/35(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  106
                DGLALKAGIRSFVESES VDS  SSP I +QLGEN
Subject   3331  DGLALKAGIRSFVESESLVDSTFSSPIISRQLGEN  3435

Rupestris stem pitting associated virus isolate RSPaV PN, complete genome

Sequence ID: AY368172.2 Length: 8743 Number of Matches: 2

Range 1: 3331 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.2 bits(134) 0.0 28/35(80%) 0/35(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  106
                DGLALKAGIRSFVESES  DS+LSSP + KQLGE+
Subject   3331  DGLALKAGIRSFVESESLADSSLSSPAVLKQLGED  3435

Range 2: 3330 to 3431 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.5 bits(111) 0.0 22/34(65%) 0/34(0%) Minus/Minus
Query        1  SPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  102
                SPSCF+  G ++ ES  DSLST D IPAFKA PS
Subject   3330  SPSCFKTAGEDKDESARDSLSTKDRIPAFKASPS  3431

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 2

Range 1: 3331 to 3435 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.3 bits(132) 0.0 28/35(80%) 0/35(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGEN  106
                DGLALKAGIRSFVESE  V  +LS+PTI KQLGEN
Subject   3331  DGLALKAGIRSFVESECLVSPSLSAPTIHKQLGEN  3435

Range 2: 3330 to 3434 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.5 bits(111) 0.0 24/35(69%) 0/35(0%) Minus/Minus
Query        1  FSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  105
                FSPSC  MVG ER   T  SLST D IPAFKA+PS
Subject   3330  FSPSCL*MVGAERLGLTRHSLSTKDRIPAFKARPS  3434

Nucleotide Sequence (147 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
15
30
45
60
75
90
105
120
135
147

Descriptions

Alignments

Rupestris stem pitting associated virus isolate H2 coat protein gene, complete cds

Sequence ID: GQ478315.1 Length: 905 Number of Matches: 6

Range 1: 426 to 569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        3  SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ  146
                SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ
Subject    426  SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ  569

Range 2: 425 to 568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        2  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  145
                LDWKESLL*PE*V*NCWNNK SDYPAQILHVLCKNRVEYPSGDGDSTR
Subject    425  LDWKESLL*PE*V*NCWNNKESDYPAQILHVLCKNRVEYPSGDGDSTR  568

Range 3: 426 to 569 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 46/48(96%) 0/48(0%) Plus/Plus
Query        3  LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                LIGKSPFCDLNRSEIAGIIR+VTTL RFCMYYAKIVWNIHLETGIPPA
Subject    426  LIGKSPFCDLNRSEIAGIIRKVTTLRRFCMYYAKIVWNIHLETGIPPA  569

Range 4: 424 to 570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 48/49(98%) 0/49(0%) Minus/Minus
Query        1  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  147
                *RVESPSPDGYSTRFLHSTCKICAG*SL LLFQQFQTYSGHRRDSFQSR
Subject    424  *RVESPSPDGYSTRFLHSTCKICAG*SLSLLFQQFQTYSGHRRDSFQSR  570

Range 5: 424 to 570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 48/49(98%) 0/49(0%) Plus/Plus
Query        1  P*LERVPSVT*IGLKLLE**GK*LPCTDFACTMQKSCGISIWRRGFHPL  147
                P*LERVPSVT*IGLKLLE**GK*LPC DFACTMQKSCGISIWRRGFHPL
Subject    424  P*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPL  570

Range 6: 425 to 568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 46/48(96%) 0/48(0%) Minus/Minus
Query        2  AGGIPVSRWIFHTIFA*YMQNLCRVVTSLIIPAISDLFRSQKGLFPIK  145
                AGGIPVSRWIFHTIFA*YMQNL RVVT LIIPAISDLFRSQKGLFPIK
Subject    425  AGGIPVSRWIFHTIFA*YMQNLRRVVTFLIIPAISDLFRSQKGLFPIK  568

Rupestris stem pitting associated virus isolate M37 12 coat protein gene, complete cds

Sequence ID: AY927675.1 Length: 780 Number of Matches: 6

Range 1: 364 to 507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        3  SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ  146
                SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ
Subject    364  SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ  507

Range 2: 363 to 506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 48/48(100%) 0/48(0%) Plus/Plus
Query        2  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  145
                LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR
Subject    363  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  506

Range 3: 362 to 508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 49/49(100%) 0/49(0%) Minus/Minus
Query        1  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  147
                *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR
Subject    362  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  508

Range 4: 364 to 507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        3  LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA
Subject    364  LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  507

Range 5: 362 to 508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 48/49(98%) 0/49(0%) Plus/Plus
Query        1  P*LERVPSVT*IGLKLLE**GK*LPCTDFACTMQKSCGISIWRRGFHPL  147
                P*LERVPSVT*IGLKLLE**GK*LPC DFACTMQKSCGISIWRRGFHPL
Subject    362  P*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPL  508

Range 6: 363 to 506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        2  AGGIPVSRWIFHTIFA*YMQNLCRVVTSLIIPAISDLFRSQKGLFPIK  145
                AGGIPVSRWIFHTIFA*YMQNL RVVTSLIIPAISDLFRSQKGLFPIK
Subject    363  AGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIK  506

Rupestris stem pitting associated virus isolate TRCV1 28 kDa coat protein gene, complete cds

Sequence ID: DQ364986.1 Length: 867 Number of Matches: 6

Range 1: 407 to 550 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        3  SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ  146
                SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ
Subject    407  SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ  550

Range 2: 406 to 549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 48/48(100%) 0/48(0%) Plus/Plus
Query        2  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  145
                LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR
Subject    406  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  549

Range 3: 405 to 551 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 49/49(100%) 0/49(0%) Minus/Minus
Query        1  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  147
                *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR
Subject    405  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  551

Range 4: 407 to 550 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        3  LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA
Subject    407  LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  550

Range 5: 405 to 551 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 48/49(98%) 0/49(0%) Plus/Plus
Query        1  P*LERVPSVT*IGLKLLE**GK*LPCTDFACTMQKSCGISIWRRGFHPL  147
                P*LERVPSVT*IGLKLLE**GK*LPC DFACTMQKSCGISIWRRGFHPL
Subject    405  P*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPL  551

Range 6: 406 to 549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        2  AGGIPVSRWIFHTIFA*YMQNLCRVVTSLIIPAISDLFRSQKGLFPIK  145
                AGGIPVSRWIFHTIFA*YMQNL RVVTSLIIPAISDLFRSQKGLFPIK
Subject    406  AGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIK  549

Grapevine rupestris stem pitting associated virus isolate EWCH6 collection date Nov 2005 coat protein gene, complete cds

Sequence ID: FJ943289.1 Length: 780 Number of Matches: 6

Range 1: 364 to 507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        3  SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ  146
                SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ
Subject    364  SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ  507

Range 2: 363 to 506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 48/48(100%) 0/48(0%) Plus/Plus
Query        2  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  145
                LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR
Subject    363  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  506

Range 3: 362 to 508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 49/49(100%) 0/49(0%) Minus/Minus
Query        1  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  147
                *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR
Subject    362  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  508

Range 4: 364 to 507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        3  LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA
Subject    364  LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  507

Range 5: 362 to 508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 48/49(98%) 0/49(0%) Plus/Plus
Query        1  P*LERVPSVT*IGLKLLE**GK*LPCTDFACTMQKSCGISIWRRGFHPL  147
                P*LERVPSVT*IGLKLLE**GK*LPC DFACTMQKSCGISIWRRGFHPL
Subject    362  P*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPL  508

Range 6: 363 to 506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        2  AGGIPVSRWIFHTIFA*YMQNLCRVVTSLIIPAISDLFRSQKGLFPIK  145
                AGGIPVSRWIFHTIFA*YMQNL RVVTSLIIPAISDLFRSQKGLFPIK
Subject    363  AGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIK  506

Grapevine rupestris stem pitting associated virus isolate ORPN4 collection date Nov 2007 coat protein gene, complete cds

Sequence ID: FJ943304.1 Length: 780 Number of Matches: 6

Range 1: 364 to 507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        3  SGWNPRLQMDIPHDFCIVHAKSVQGSHFPYYSSNFRPIQVTEGTLSNQ  146
                SGWNPRLQMDIPHDFCIVHAKS QGSHFPYYSSNFRPIQVTEGTLSNQ
Subject    364  SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQ  507

Range 2: 363 to 506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.1 bits(258) 0.0 48/48(100%) 0/48(0%) Plus/Plus
Query        2  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  145
                LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR
Subject    363  LDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR  506

Range 3: 362 to 508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 49/49(100%) 0/49(0%) Minus/Minus
Query        1  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  147
                *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR
Subject    362  *RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSR  508

Range 4: 364 to 507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 47/48(98%) 0/48(0%) Plus/Plus
Query        3  LIGKSPFCDLNRSEIAGIIREVTTLHRFCMYYAKIVWNIHLETGIPPA  146
                LIGKSPFCDLNRSEIAGIIREVTTL RFCMYYAKIVWNIHLETGIPPA
Subject    364  LIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  507

Range 5: 362 to 508 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 48/49(98%) 0/49(0%) Plus/Plus
Query        1  P*LERVPSVT*IGLKLLE**GK*LPCTDFACTMQKSCGISIWRRGFHPL  147
                P*LERVPSVT*IGLKLLE**GK*LPC DFACTMQKSCGISIWRRGFHPL
Subject    362  P*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPL  508

Range 6: 363 to 506 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        2  AGGIPVSRWIFHTIFA*YMQNLCRVVTSLIIPAISDLFRSQKGLFPIK  145
                AGGIPVSRWIFHTIFA*YMQNL RVVTSLIIPAISDLFRSQKGLFPIK
Subject    363  AGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIK  506

Nucleotide Sequence (229 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
23
46
69
92
115
138
161
184
207
229

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 1385 to 1612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.4 bits(396) 0.0 73/76(96%) 0/76(0%) Plus/Plus
Query        1  ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  228
                ATFDVVTLLKSRDPT DDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWL A+FPKKVKFAILR
Subject   1385  ATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLSASFPKKVKFAILR  1612

Range 2: 1386 to 1613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.1 bits(391) 0.0 76/76(100%) 0/76(0%) Plus/Plus
Query        2  LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG
Subject   1386  LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  1613

Range 3: 1385 to 1612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 75/76(99%) 0/76(0%) Minus/Minus
Query        1  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS  228
                PEYGKFDFLRK STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS
Subject   1385  PEYGKFDFLRK*STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS  1612

Range 4: 1387 to 1611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.7 bits(364) 0.0 72/75(96%) 0/75(0%) Plus/Plus
Query        3  YI*CCYLIEIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ  227
                YI*CCYLIEIKGSD R**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALA C IS*ESQICHTQ
Subject   1387  YI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALA*CFIS*ESQICHTQ  1611

Range 5: 1387 to 1611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 72/75(96%) 0/75(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV  227
                LSMANLTFLGN A SQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV
Subject   1387  LSMANLTFLGNEALSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNV  1611

Range 6: 1386 to 1613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 73/76(96%) 0/76(0%) Minus/Minus
Query        2  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*  229
                P*VWQI*LS*EM+H ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM*
Subject   1386  P*VWQI*LS*EMKH*ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*  1613

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 7129 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.0 bits(393) 0.0 75/76(99%) 0/76(0%) Minus/Minus
Query        1  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS  228
                PEYGKFDFLRKCSTKPMP PIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS
Subject   7129  PEYGKFDFLRKCSTKPMPTPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS  7356

Range 2: 7130 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 75/76(99%) 0/76(0%) Plus/Plus
Query        2  LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIG+GIGLVLHFLRKSNLPYSG
Subject   7130  LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGVGIGLVLHFLRKSNLPYSG  7357

Range 3: 7129 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 71/76(93%) 0/76(0%) Plus/Plus
Query        1  ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  228
                ATFDVVTLLKSRDPT DDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHP+DDW GHWLGAAF KKVKFAI R
Subject   7129  ATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPVDDWRGHWLGAAFSKKVKFAIFR  7356

Range 4: 7131 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.4 bits(370) 0.0 71/75(95%) 0/75(0%) Plus/Plus
Query        3  YI*CCYLIEIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ  227
                YI*CCYLIEIKGSD R**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSP *RLAWALAWCCI *ESQICH Q
Subject   7131  YI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPR*RLAWALAWCCIF*ESQICHIQ  7355

Range 5: 7131 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 70/75(93%) 0/75(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV  227
                L+MANLTFL NAAPSQCP QSS G**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV
Subject   7131  LNMANLTFLENAAPSQCPRQSSTG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNV  7355

Range 6: 7130 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 71/76(93%) 0/76(0%) Minus/Minus
Query        2  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*  229
                P*+WQI*LS*+MQHQANA ANRQ GDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM*
Subject   7130  P*IWQI*LS*KMQHQANAHANRQRGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*  7357

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 7129 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
171.1 bits(367) 0.0 71/76(93%) 0/76(0%) Minus/Minus
Query        1  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS  228
                PEYGKFDFLRKCSTKPMPKPIVNGV VLAQFAGC*KGISLHDDQ L MSCCSNVEPVLII GRI *FQ*GNNIKCS
Subject   7129  PEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCS  7356

Range 2: 7130 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 71/76(93%) 0/76(0%) Plus/Plus
Query        2  LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                LHLMLLPY*NQ IRP MISTGSTLLQQDI R+*SSCSEMPFQQPANWAKT+TPLTIGLGIGLVLHFLRKSNLPYSG
Subject   7130  LHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSG  7357

Range 3: 7132 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 68/75(91%) 0/75(0%) Plus/Plus
Query        4  TFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  228
                TFDVVTLLKSRDPT DDKHWFYIAATRHRKKLIIMQ*+AFSATCELGQN + IDD LGHWLGAAFPKKVKFA+LR
Subject   7132  TFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*DAFSATCELGQNCYSIDDRLGHWLGAAFPKKVKFAVLR  7356

Range 4: 7131 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.7 bits(340) 0.0 69/75(92%) 0/75(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV  227
                LS ANLTFLGNAAPSQCPS SSM * FWPNSQVAEKA HCMMINFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV
Subject   7131  LSTANLTFLGNAAPSQCPSLSSME*QFWPNSQVAEKASHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNV  7355

Range 5: 7131 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 65/75(87%) 0/75(0%) Plus/Plus
Query        3  YI*CCYLIEIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ  227
                YI*CCYLIEIK SD  **ALVLHCCNKT*+E+DHHAV+CLFSNLRIGPKL  H*R AWALAWCCIS*ESQIC TQ
Subject   7131  YI*CCYLIEIKRSDL***ALVLHCCNKT*EEVDHHAVRCLFSNLRIGPKLLLH*R*AWALAWCCIS*ESQICRTQ  7355

Range 6: 7130 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.8 bits(301) 0.0 66/76(87%) 0/76(0%) Minus/Minus
Query        2  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*  229
                P*V QI*LS*EMQHQANAQA RQW +SFGPIRRLLKRH TA**S S YVLLQQCRTSAYH+ SD LISIR*QHQM*
Subject   7130  P*VRQI*LS*EMQHQANAQAYRQWSNSFGPIRRLLKRHLTA**STSSYVLLQQCRTSAYHQRSDLLISIR*QHQM*  7357

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 6

Range 1: 7129 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 56/76(74%) 0/76(0%) Plus/Plus
Query        1  ATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  228
                +TF+VVTLLKSRDPTP+D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID WLGHW  AAFP++VK  + R
Subject   7129  STFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFPEEVKSTLFR  7356

Range 2: 7151 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 56/69(81%) 0/69(0%) Plus/Plus
Query       23  Y*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                +*NQ I+P  I TG TLL QD  RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG
Subject   7151  F*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG  7357

Range 3: 7135 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 52/74(70%) 0/74(0%) Minus/Minus
Query        7  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK  228
                PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ   ++K
Subject   7135  PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVK  7356

Range 4: 7131 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 53/75(71%) 0/75(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV  227
                L+  +LT  GNAA +QCPSQ SM   F PNSQ AEKA +CM+INF LCLVAAM*NQCLSSGVGSLDF +VTT  V
Subject   7131  LNKVDLTSSGNAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKV  7355

Range 5: 7155 to 7343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 46/63(73%) 0/63(0%) Plus/Plus
Query       27  EIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQI  215
                EIK S+PR *ALVLHCC KT  EID+HAV+CLFS+LRIG K   H*+LAWAL  CCIS* SQI
Subject   7155  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIS*GSQI  7343

Range 6: 7154 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 46/68(68%) 0/68(0%) Minus/Minus
Query       26  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS  229
                P*+  I*L  EMQH+ NAQAN QW   F PIRRLLKRH TA* SIS  VL QQC+TSAY  G D LIS
Subject   7154  P*IR*I*LPQEMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7357

UNVERIFIED: Grapevine rupestris stem pitting associated virus isolate 22_2_3 genomic sequence

Sequence ID: KT000371.1 Length: 7486 Number of Matches: 6

Range 1: 6089 to 6313 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 56/75(75%) 0/75(0%) Plus/Plus
Query        4  TFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  228
                TF+VVTLLKSRDPTP+D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ ID WLGHW  AAF +KVK  + R
Subject   6089  TFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWXXAAFSEKVKSTLFR  6313

Range 2: 6108 to 6314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 54/69(78%) 0/69(0%) Plus/Plus
Query       23  Y*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  229
                +*NQ I+P  I TG TLL QD  RN* SCS+MPFQQPANWAKTITPLT+GLGIG  LHFLRKSNLPYSG
Subject   6108  F*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGXXLHFLRKSNLPYSG  6314

Range 3: 6092 to 6313 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 51/74(69%) 0/74(0%) Minus/Minus
Query        7  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK  228
                PE G+FDFLRKCS  PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ   ++K
Subject   6092  PE*GRFDFLRKCSXXPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVK  6313

Range 4: 6088 to 6312 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 53/75(71%) 0/75(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNV  227
                L+  +LTF  NAA  QCPSQ SM   F PNSQ AEKA +CM+INF LCLVAAM*NQCLSSGVGSLDF +VTT  V
Subject   6088  LNKVDLTFSENAAXXQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKV  6312

Range 5: 6112 to 6300 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 45/63(71%) 0/63(0%) Plus/Plus
Query       27  EIKGSDPR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALAWCCIS*ESQI  215
                EIK S+PR *ALVLHCC KT  EID+HAV+CLFS+LRIG K   H*+LAWAL   CI *ESQI
Subject   6112  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALXXXCIF*ESQI  6300

Range 6: 6111 to 6314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 45/68(66%) 0/68(0%) Minus/Minus
Query       26  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS  229
                P*+  I*LS +MQ   NAQAN QW   F PIRRLLKRH TA* SIS  VL QQC+TSAY  G D LIS
Subject   6111  P*IR*I*LSQKMQXXXNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  6314

Nucleotide Sequence (178 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
18
36
54
72
90
108
126
144
162
178

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8

Range 1: 1286 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 58/59(98%) 0/59(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  177
                LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA
Subject   1286  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA  1462

Range 2: 1287 to 1460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 54/58(93%) 0/58(0%) Plus/Minus
Query        3  QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  176
                QQCRTSAYHR SDPLISIR*QHQM*HLVPHKEV*NRNYA+ LNQLPPCQSK AHPQHP
Subject   1287  QQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHP  1460

Range 3: 1285 to 1461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.1 bits(278) 0.0 58/59(98%) 0/59(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  178
                AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN
Subject   1285  AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  1461

Range 4: 1286 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 56/59(95%) 0/59(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  177
                CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMR  *INCLLAKAN HTLNIQ
Subject   1286  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKANQHTLNIQ  1462

Range 5: 1359 to 1460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 34/34(100%) 0/34(0%) Minus/Plus
Query        3  SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL  104
                SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL
Subject   1359  SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL  1460

Range 6: 1285 to 1326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 13/14(93%) 0/14(0%) Minus/Plus
Query      137  VGC*GCANLLWQGG  178
                VGC*GCA+LLWQGG
Subject   1285  VGC*GCADLLWQGG  1326

Range 7: 1360 to 1461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 33/34(97%) 0/34(0%) Minus/Plus
Query        2  QTSL*GTRCYI*CCYLIEIKGSDPR**ALVLHCC  103
                QTSL*GTRCYI*CCYLIEIKGSD R**ALVLHCC
Subject   1360  QTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCC  1461

Range 8: 1287 to 1310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 8/8(100%) 0/8(0%) Minus/Plus
Query      153  WMLRVC*F  176
                WMLRVC*F
Subject   1287  WMLRVC*F  1310

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8

Range 1: 7030 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 58/59(98%) 0/59(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  177
                LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA
Subject   7030  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA  7206

Range 2: 7031 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 53/58(91%) 0/58(0%) Plus/Minus
Query        3  QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  176
                QQCRTSAYHR SDPLISIR*QHQM*HL PHKEV*N+NYA+ LNQLPPCQSKLAHPQHP
Subject   7031  QQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHP  7204

Range 3: 7029 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.1 bits(278) 0.0 58/59(98%) 0/59(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  178
                AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN
Subject   7029  AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  7205

Range 4: 7030 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 55/59(93%) 0/59(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  177
                CSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRKFEI IMR  *INCLLAKAN*HTLNIQ
Subject   7030  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQ  7206

Range 5: 7103 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/34(97%) 0/34(0%) Minus/Plus
Query        3  SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL  104
                SNFLVR EVLHLMLLPY*NQGIRPPMISTGSTLL
Subject   7103  SNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLL  7204

Range 6: 7029 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 14/14(100%) 0/14(0%) Minus/Plus
Query      137  VGC*GCANLLWQGG  178
                VGC*GCANLLWQGG
Subject   7029  VGC*GCANLLWQGG  7070

Range 7: 7104 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 32/34(94%) 0/34(0%) Minus/Plus
Query        2  QTSL*GTRCYI*CCYLIEIKGSDPR**ALVLHCC  103
                QTSL*G RCYI*CCYLIEIKGSD R**ALVLHCC
Subject   7104  QTSL*GARCYI*CCYLIEIKGSDLR**ALVLHCC  7205

Range 8: 7031 to 7054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 8/8(100%) 0/8(0%) Minus/Plus
Query      153  WMLRVC*F  176
                WMLRVC*F
Subject   7031  WMLRVC*F  7054

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 4

Range 1: 1286 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 55/59(93%) 0/59(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  177
                LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA
Subject   1286  LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA  1462

Range 2: 1285 to 1461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(243) 0.0 49/59(83%) 0/59(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  178
                AA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+
Subject   1285  AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS  1461

Range 3: 1286 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 29/59(49%) 0/59(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  177
                C +VEP+LI    +P  Q*  N+KC T +L  + E+GI+R C*+  LL+KAN  +LNIQ
Subject   1286  CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*VYGLLSKANEDSLNIQ  1462

Range 4: 1287 to 1451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 26/55(47%) 0/55(0%) Plus/Minus
Query       12  RTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  176
                RT+AY     P  SI  Q QM +  P +  *+RN A+LL   PP QSK   PQHP
Subject   1287  RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLGLRPPFQSK*GLPQHP  1451

Grapevine rupestris stem pitting associated virus isolate SK30, complete genome

Sequence ID: KX274277.1 Length: 8724 Number of Matches: 5

Range 1: 7030 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 55/59(93%) 0/59(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  177
                LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA
Subject   7030  LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA  7206

Range 2: 7029 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(243) 0.0 49/59(83%) 0/59(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  178
                AA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+
Subject   7029  AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS  7205

Range 3: 7030 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 30/59(51%) 0/59(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  177
                C +VEP+LI    +P  Q*  N+KC T +L  + E+GI+R C*I  LL+KAN ++LNIQ
Subject   7030  CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQ  7206

Range 4: 7031 to 7195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 26/55(47%) 0/55(0%) Plus/Minus
Query       12  RTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  176
                RT+AY     P  SI  Q QM +  P +  *+RN A+LL+  PP QSK   PQHP
Subject   7031  RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHP  7195

Range 5: 7032 to 7196 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 29/55(53%) 0/55(0%) Minus/Plus
Query       11  GC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRCYI*CCYLIEIKGSDPR**ALVL  175
                GC*G ++LLW+GG   SS A FR Q +L G    I* C +IE+ G + R *ALVL
Subject   7032  GC*GSSHLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVL  7196

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 5

Range 1: 7030 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 55/59(93%) 0/59(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  177
                LDVEGVLICFGKEAVDLA +HNSDFKLPCEVRG+TFDVVTLLKSRDPTPDD+HWFYIAA
Subject   7030  LDVEGVLICFGKEAVDLAVSHNSDFKLPCEVRGSTFDVVTLLKSRDPTPDDRHWFYIAA  7206

Range 2: 7029 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.1 bits(258) 0.0 53/59(90%) 0/59(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  178
                AAM*NQCLSSGVGSLDFNKVTTSNV P TSQGSLKSELC  A+STAS PKQISTPSTSN
Subject   7029  AAM*NQCLSSGVGSLDFNKVTTSNVEPLTSQGSLKSELCETARSTASFPKQISTPSTSN  7205

Range 3: 7033 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 30/58(52%) 0/58(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRGC*INCLLAKAN*HTLNI  174
                CS+VEP+ ++GG +P* Q  +N+KC T +  R+FEI I+R   I+CL +KA+*HTL+I
Subject   7033  CSDVEPMPVVGGWVP*LQQSDNVKC*TPHFARQFEIRIVRNRQIHCLFSKAD*HTLDI  7206

Range 4: 7034 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 29/57(51%) 0/57(0%) Plus/Minus
Query        3  QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKEV*NRNYARLLNQLPPCQSKLAHPQH  173
                Q+CRT+A  RG  PL S +*Q QM +    K V*N+N A+  + LP  QS+LAHP+H
Subject   7034  QRCRTNACRRGLGPLTSTK*QRQMLNPSLRKAV*NQNCAKPPDPLPLFQSRLAHPRH  7204

Range 5: 7029 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 31/59(53%) 0/59(0%) Minus/Plus
Query        2  VGC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRCYI*CCYLIEIKGSDPR**ALVLHCC  178
                V C GCANLLW+ GS     A F FQT+L      I* C+ +E+KG +PR  ALVLH C
Subject   7029  VRCRGCANLLWKRGSGSGGFAQF*FQTALRSEGFNI*RCHFVEVKGPNPRRQALVLHRC  7205

Nucleotide Sequence (106 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
11
22
33
44
55
66
77
88
99
106

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 1382 to 1486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 33/35(94%) 0/35(0%) Plus/Plus
Query        1  GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI  105
                GA+FDVVTLLKSRDPT DDKHWFYIAATRHRKKLI
Subject   1382  GATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLI  1486

Range 2: 1383 to 1487 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 35/35(100%) 0/35(0%) Plus/Plus
Query        2  VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S  106
                VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S
Subject   1383  VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S  1487

Range 3: 1382 to 1486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 34/35(97%) 0/35(0%) Minus/Minus
Query        1  DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK*ST  105
                DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK ST
Subject   1382  DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCST  1486

Range 4: 1384 to 1485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 31/34(91%) 0/34(0%) Plus/Plus
Query        3  CFI*CCYLIEIKGSDPR**ALVLHCCNKT*KETD  104
                C+I*CCYLIEIKGSD R**ALVLHCCNKT*KE D
Subject   1384  CYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEID  1485

Range 5: 1383 to 1487 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 32/35(91%) 0/35(0%) Minus/Minus
Query        2  *SVSFYVLLQQCRTSAYHRGSDPLISIR*QHQMKH  106
                *S+SFYVLLQQCRTSAYHR SDPLISIR*QHQM H
Subject   1383  *SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*H  1487

Range 6: 1384 to 1485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 31/34(91%) 0/34(0%) Minus/Minus
Query        3  ISFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNEA  104
                I+FFLCLVAAM*NQCLSS VGSLDFNKVTTSN A
Subject   1384  INFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVA  1485

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 7126 to 7230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 33/35(94%) 0/35(0%) Plus/Plus
Query        1  GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI  105
                GA+FDVVTLLKSRDPT DDKHWFYIAATRHRKKLI
Subject   7126  GATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLI  7230

Range 2: 7127 to 7231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 35/35(100%) 0/35(0%) Plus/Plus
Query        2  VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S  106
                VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S
Subject   7127  VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S  7231

Range 3: 7126 to 7230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 34/35(97%) 0/35(0%) Minus/Minus
Query        1  DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK*ST  105
                DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK ST
Subject   7126  DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCST  7230

Range 4: 7127 to 7231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 32/35(91%) 0/35(0%) Minus/Minus
Query        2  *SVSFYVLLQQCRTSAYHRGSDPLISIR*QHQMKH  106
                *S+SFYVLLQQCRTSAYHR SDPLISIR*QHQM H
Subject   7127  *SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*H  7231

Range 5: 7128 to 7229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 31/34(91%) 0/34(0%) Plus/Plus
Query        3  CFI*CCYLIEIKGSDPR**ALVLHCCNKT*KETD  104
                C+I*CCYLIEIKGSD R**ALVLHCCNKT*KE D
Subject   7128  CYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEID  7229

Range 6: 7128 to 7229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 31/34(91%) 0/34(0%) Minus/Minus
Query        3  ISFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNEA  104
                I+FFLCLVAAM*NQCLSS VGSLDFNKVTTSN A
Subject   7128  INFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVA  7229

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 2

Range 1: 7126 to 7230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 31/35(89%) 0/35(0%) Plus/Plus
Query        1  GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI  105
                G++F+VVTLLKSRDPTP+DKHWFYIAATRHRKKLI
Subject   7126  GSTFNVVTLLKSRDPTPEDKHWFYIAATRHRKKLI  7230

Range 2: 7140 to 7229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 27/30(90%) 0/30(0%) Minus/Minus
Query       15  ISFFLCLVAAM*NQCLSSGVGSLDFNKVTT  104
                I+FFLCLVAAM*NQCLSSGVGSLDF +VTT
Subject   7140  INFFLCLVAAM*NQCLSSGVGSLDFKRVTT  7229

Grapevine rupestris stem pitting associated virus isolate GRSPaV WA, complete genome

Sequence ID: KC427107.1 Length: 8742 Number of Matches: 2

Range 1: 7126 to 7230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 31/35(89%) 0/35(0%) Plus/Plus
Query        1  GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI  105
                G++F+VVTLLKSRDPTP+DKHWFYIAATRHRKKLI
Subject   7126  GSTFNVVTLLKSRDPTPEDKHWFYIAATRHRKKLI  7230

Range 2: 7140 to 7229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 27/30(90%) 0/30(0%) Minus/Minus
Query       15  ISFFLCLVAAM*NQCLSSGVGSLDFNKVTT  104
                I+FFLCLVAAM*NQCLSSGVGSLDF +VTT
Subject   7140  INFFLCLVAAM*NQCLSSGVGSLDFKRVTT  7229

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 7126 to 7230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 32/35(91%) 0/35(0%) Plus/Plus
Query        1  GASFDVVTLLKSRDPTPDDKHWFYIAATRHRKKLI  105
                G +FDVVTLLKSRDPT DDKHWFYIAATRHRKKLI
Subject   7126  GTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLI  7230

Range 2: 7134 to 7229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 30/32(94%) 0/32(0%) Minus/Minus
Query        9  ISFFLCLVAAM*NQCLSSGVGSLDFNKVTTSN  104
                I+FFLCLVAAM*NQCLSS VGSLDFNKVTTSN
Subject   7134  INFFLCLVAAM*NQCLSSEVGSLDFNKVTTSN  7229

Range 3: 7126 to 7230 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 30/35(86%) 0/35(0%) Minus/Minus
Query        1  DQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIK*ST  105
                DQ L MSCCSNVEPVLII GRI *FQ*GNNIK ST
Subject   7126  DQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCST  7230

Range 4: 7127 to 7231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 31/35(89%) 0/35(0%) Plus/Plus
Query        2  VLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*S  106
                VLHLMLLPY*NQ IRP MISTGSTLLQQDI R+*S
Subject   7127  VLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*S  7231

Range 5: 7133 to 7231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 28/33(85%) 0/33(0%) Minus/Minus
Query        8  *SVSFYVLLQQCRTSAYHRGSDPLISIR*QHQM  106
                *S S YVLLQQCRTSAYH+ SD LISIR*QHQM
Subject   7133  *STSSYVLLQQCRTSAYHQRSDLLISIR*QHQM  7231

Range 6: 7131 to 7229 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 27/33(82%) 0/33(0%) Plus/Plus
Query        6  FI*CCYLIEIKGSDPR**ALVLHCCNKT*KETD  104
                +I*CCYLIEIK SD  **ALVLHCCNKT*+E D
Subject   7131  YI*CCYLIEIKRSDL***ALVLHCCNKT*EEVD  7229

Nucleotide Sequence (783 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
79
158
237
316
395
474
553
632
711
783

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8

Range 1: 2555 to 3334 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
602.2 bits(1308) 0.0 252/260(97%) 0/260(0%) Minus/Minus
Query        3  RRC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PELVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ  782
                RRC*EESQLSAKSS+HHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSM ICELLAC  I*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*P LVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KF  HLLIFGVGMSKTLSHSGNWKHHGK+CSAYPEASQRTRQVQLSGCNGFLQ
Subject   2555  RRC*EESQLSAKSSYHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSM*ICELLACQLI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PGLVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFGRHLLIFGVGMSKTLSHSGNWKHHGKNCSAYPEASQRTRQVQLSGCNGFLQ  3334

Range 2: 2554 to 3333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
596.7 bits(1296) 0.0 258/260(99%) 0/260(0%) Plus/Plus
Query        2  VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLGKCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKS CSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDG+CFWHSVGFLLSTD
Subject   2554  VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLGKCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSTCSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTD  3333

Range 3: 2553 to 3335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
577.5 bits(1254) 0.0 257/261(98%) 0/261(0%) Minus/Minus
Query        1  PSVLRRKPTECQKQSPSPGTGKVLXXXXXXXXXXXIGQPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST  783
                PSVLRRKPTECQKQ PSPGTGKVLKSSISKSADASIGQPNNNSLDPENEH DL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGL+KI SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST
Subject   2553  PSVLRRKPTECQKQLPSPGTGKVLKSSISKSADASIGQPNNNSLDPENEHVDL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLMKIWSSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST  3335

Range 4: 2932 to 3333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
306.7 bits(663) 0.0 131/134(98%) 0/134(0%) Minus/Minus
Query      380  VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPI  781
                VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LA  SDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQ+L*QAGPSSGEYDPI
Subject   2932  VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LAS*SDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQDL*QAGPSSGEYDPI  3333

Range 5: 2554 to 2895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
261.3 bits(564) 0.0 109/114(96%) 0/114(0%) Minus/Minus
Query        2  EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN  343
                EIVYQILELVKVMTRKARTKV*C+ACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGAN+NL++IF*FLASECQRHSPTQAIGNTMEK+ALHTPRHLKELARFNCQAAMVSFN
Subject   2554  EIVYQILELVKVMTRKARTKV*CEACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANENLVVIF*FLASECQRHSPTQAIGNTMEKIALHTPRHLKELARFNCQAAMVSFN  2895

Range 6: 2900 to 3334 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
331.9 bits(718) 0.0 142/145(98%) 0/145(0%) Plus/Plus
Query      348  *L*VPKVWVSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT  782
                *L*VPKVWVSVIGSYSPLLGPACHK WLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSD  AS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT
Subject   2900  *L*VPKVWVSVIGSYSPLLGPACHKSWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDQLAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT  3334

Range 7: 2555 to 2857 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 96/101(95%) 0/101(0%) Plus/Plus
Query        3  LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFLV  305
                LKETIAA*QLNLASSLRCLGVCRA FSMVFPIA*VGECL*HSDAKN*KM  KF LAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQA HQTFVLAFLV
Subject   2555  LKETIAA*QLNLASSLRCLGVCRAIFSMVFPIA*VGECL*HSDAKN*KMTTKFSLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQASHQTFVLAFLV  2857

Range 8: 2553 to 3278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
517.5 bits(1123) 0.0 233/242(96%) 0/242(0%) Plus/Plus
Query        1  S*RKPLQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC  726
                S*RKPLQPDN*TWRVL*DASGYAEQ FPWCFQLPEWESVFDIPTPKIRR*  NF+*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKL+IRPLFLLFLS*LSQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTS GYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQI+ QAKSSQI MLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC
Subject   2553  S*RKPLQPDN*TWRVL*DASGYAEQFFPWCFQLPEWESVFDIPTPKIRR*RPNFH*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLHIRPLFLLFLS*LSQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSPGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQINWQAKSSQIYMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC  3278

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9

Range 1: 2554 to 3333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
587.6 bits(1276) 0.0 253/260(97%) 0/260(0%) Plus/Plus
Query        2  VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                VEGNHCSLTIEP EFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIF+SPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLG+CDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDF+IKKIED SIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGC IEASADFEIEDFNTFPVPGDG+CFWHSVGFLLSTD
Subject   2554  VEGNHCSLTIEPSEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFVSPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNLKLALGAQGLGQCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFNIKKIEDSSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCQIEASADFEIEDFNTFPVPGDGNCFWHSVGFLLSTD  3333

Range 2: 2553 to 3224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
490.0 bits(1063) 0.0 209/224(93%) 0/224(0%) Minus/Minus
Query        1  QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST  672
                QPNNNSLDPENEHADL*TLSLPVDLTGAL*DIT ME SSIFL+LKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLG+ARTCDRPVPVVANTTLSH P PWAPRA+LRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHM RSSFS*FCS+GT GL KI SSSS+FWRRNVKDTLPL+QLETPWKKLLCIPRGISKNS GSIVRLQWFPST
Subject   2553  QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITNMELSSIFLMLKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGMARTCDRPVPVVANTTLSHWPNPWAPRASLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMFRSSFS*FCSIGT*GLTKIWSSSSSFWRRNVKDTLPLKQLETPWKKLLCIPRGISKNSLGSIVRLQWFPST  3224

Range 3: 3264 to 3335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 23/24(96%) 0/24(0%) Minus/Minus
Query      712  PSVLRRKPTECQKQSPSPGTGKVL  783
                PSVLRRKPTECQKQ PSPGTGKVL
Subject   3264  PSVLRRKPTECQKQLPSPGTGKVL  3335

Range 4: 2555 to 3328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
508.8 bits(1104) 0.0 220/258(85%) 0/258(0%) Minus/Minus
Query        3  C*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PELVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ  776
                C*EE+QLSAKSS+HHQAQEKC*SLQF++QLMPQ  SPITTP T+KMSMQICELLACLWI*LEPCKI Q W++LLSF* *NPL*KLQMIPRFLDRSQFLKKGPLQ QG TVSCFLA PELVTGRSQ WR RPYHT P LGHLEL *DCLSDP* CESYDKKSKNKGLM*SLCH*LKWIS*SHG P ATC DQASHDFAQ AL G* KF  HL +FGVGMSK LSHS NWK HGKSCSAY EASQRTR VQLSGC+GFLQ
Subject   2555  C*EENQLSAKSSYHHQAQEKC*SLQFQSQLMPQFDSPITTPLTQKMSMQICELLACLWI*LEPCKISQIWSYLLSF*C*NPL*KLQMIPRFLDRSQFLKKGPLQEQGLTVSCFLAWPELVTGRSQWWRTRPYHTGPILGHLELA*DCLSDP*ICESYDKKSKNKGLM*SLCH*LKWIS*SHGDPSATCFDQASHDFAQLALEG*QKFGRHLPVFGVGMSKILSHSNNWKRHGKSCSAYLEASQRTR*VQLSGCSGFLQ  3328

Range 5: 2932 to 3327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
271.4 bits(586) 0.0 115/132(87%) 0/132(0%) Minus/Minus
Query      380  AEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPI  775
                A+KK N*VPKAVTITRHRKSVEVFNF++S*CLN  AQ*QLP P K*ACRFVNS*LACGSDWSPVRY+K G IFYLFN EIPFKNFK*SQDFWTVVSF*RKGPFK+KD LFLASWH QNL*QAGPS GE+DPI
Subject   2932  AKKKTN*VPKAVTITRHRKSVEVFNFKVS*CLNLTAQ*QLP*PRK*ACRFVNS*LACGSDWSPVRYHKYGAIFYLFNVEIPFKNFK*SQDFWTVVSF*RKGPFKNKD*LFLASWHGQNL*QAGPSGGEHDPI  3327

Range 6: 2554 to 2895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.1 bits(509) 0.0 100/114(88%) 0/114(0%) Minus/Minus
Query        2  EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN  343
                EIVYQILE VKVMTRKARTKV*CKACAI+*NGFLDPME HLPHV+IKLLMILLN HL ANKNL++IF FLASECQR+SPTQ IGN MEKVALHT RHLKELARFNCQAA+VSFN
Subject   2554  EIVYQILEFVKVMTRKARTKV*CKACAID*NGFLDPMETHLPHVSIKLLMILLNWHLRANKNLVVIFQFLASECQRYSPTQTIGNAMEKVALHTSRHLKELARFNCQAAVVSFN  2895

Range 7: 2900 to 3328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
289.3 bits(625) 0.0 124/143(87%) 0/143(0%) Plus/Plus
Query      348  *L*VPKVWVSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA  776
                *L*VPK W SVIGS SP LGPACHKFW CQEARNS+SL LKGPFL*KLTTVQKSWDHLKFLKGIS LKR*K+ P L*YLTGLQSDPQAS*EFTNLHAHF G+GSCYWA +LRHQL  KLKTSTLFLCLVMVTAFGTQL FF A
Subject   2900  *L*VPKDWASVIGSCSPPLGPACHKFWPCQEARNSQSLFLKGPFL*KLTTVQKSWDHLKFLKGISTLKR*KIAPYL*YLTGLQSDPQAS*EFTNLHAHFLGQGSCYWAVKLRHQLTLKLKTSTLFLCLVMVTAFGTQLVFFLA  3328

Range 8: 2555 to 2857 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.1 bits(415) 0.0 87/101(86%) 0/101(0%) Plus/Plus
Query        3  LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFLV  305
                LKET AA*QLNLASSLRCL VCRATFSM FPI *VGE L*HSDAKN KM  KFLLA KC LSKIMRSLI TCG+W SMGSRNPFQ MAQALHQTFVLAFLV
Subject   2555  LKETTAA*QLNLASSLRCLEVCRATFSMAFPIV*VGEYL*HSDAKNWKMTTKFLLALKCQLSKIMRSLIETCGRWVSMGSRNPFQSMAQALHQTFVLAFLV  2857

Range 9: 2553 to 3278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
438.2 bits(950) 0.0 206/242(85%) 0/242(0%) Plus/Plus
Query        1  S*RKPLQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC  726
                S*RKPLQPDN*T RVL*DAS YAEQLFPW FQL EWES+FDIPTPK  R*  NF *P SA+*AKS*EA*S+HVA+G PWDQEIHFN WHKLYIRPLFLLFLS*LSQ+QGSDKQSQ SSRCPR G V**GR+RH+WDRPVTSSG+AKKQETV+PC *RGPFFRN*LRSKNLGII*SF*RGFQ+*KDRR  H+C+ILQGSSQIHRQAKSSQICMLIF V+GVVIGL +*GIS*  N*RLQHFSC
Subject   2553  S*RKPLQPDN*T*RVL*DASRYAEQLFPWRFQLFEWESIFDIPTPKTGR*RPNFC*PSSAN*AKS*EA*SKHVADGSPWDQEIHFNQWHKLYIRPLFLLFLS*LSQIQGSDKQSQASSRCPRIGPV**GRVRHHWDRPVTSSGHAKKQETVNPCS*RGPFFRN*LRSKNLGII*SF*RGFQH*KDRR*LHICDILQGSSQIHRQAKSSQICMLIFWVKGVVIGLSN*GIS*L*N*RLQHFSC  3278

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 12

Range 1: 2554 to 3333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
538.1 bits(1168) 0.0 227/260(87%) 0/260(0%) Plus/Plus
Query        2  VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                VEGNHC+L IEPGEFFEMPRGMQS+ FHGVSNC +GRVSLTFRRQK+ D+DQ+FISPQVPIE NHEKLDR+MWQMGLHG+KKSISINGTSFTSDLCSCFSCHNFHKFKDL++NLKLALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSIL LEGALSLETDYGPK+LGSFEVFKGDFSIKKIE+GSIFVISYRA +RS+GKLRVHKS CSFSGSRE+LLGC IEASAD++I+DFNTF VPGDG+CFWHSVGFLLSTD
Subject   2554  VEGNHCNLLIEPGEFFEMPRGMQSSHFHGVSNCSNGRVSLTFRRQKVNDEDQVFISPQVPIELNHEKLDRSMWQMGLHGVKKSISINGTSFTSDLCSCFSCHNFHKFKDLVSNLKLALGAQGLGQCDRVVFATTGAGLSRVLDMPRSKKQSILTLEGALSLETDYGPKVLGSFEVFKGDFSIKKIEEGSIFVISYRAAIRSSGKLRVHKSECSFSGSREVLLGCQIEASADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD  3333

Range 2: 2553 to 3224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
369.9 bits(801) 0.0 163/224(73%) 0/224(0%) Minus/Minus
Query        1  QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST  672
                QP+  SLDPENEH+DL*TLSLP DL  AL*++TK++PSSIFL+LKSPLKTS DP+  GP*SVS++ APSR RIDCFLLLG++ T D P PVVA TTLSH P P AP+AN RL  +SLNL*KL QEK EQRSDVKLVPLIE+DF  P RPICHMLRSSFS F S+GT GL+K *SSS  F R  V+DTLPL QLETPWK LLC+P GISKNSPGS+ +LQ FPST
Subject   2553  QPSKTSLDPENEHSDL*TLSLPEDLIAAL*EMTKIDPSSIFLMLKSPLKTSKDPRTLGP*SVSRDSAPSRVRIDCFLLLGMSSTLDNPAPVVAKTTLSH*PNP*APKANFRLLTKSLNL*KLWQEKHEQRSDVKLVPLIEIDFFTPCRPICHMLRSSFSWFNSIGTCGLMKT*SSSLTF*RLKVRDTLPLEQLETPWK*LLCMPLGISKNSPGSMSKLQ*FPST  3224

Range 3: 3264 to 3335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 19/24(79%) 0/24(0%) Minus/Minus
Query      712  PSVLRRKPTECQKQSPSPGTGKVL  783
                PSVL + PTECQKQ PSPGT KVL
Subject   3264  PSVLSKNPTECQKQLPSPGTEKVL  3335

Range 4: 2554 to 3327 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.5 bits(477) 0.0 119/258(46%) 0/258(0%) Minus/Minus
Query        2  AEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPIXXXXXXXXXXXLEIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN  775
                A+ + N VP+A+T+  H K VE+ N  IS*  N         PGK*A  F+N   A  S+ SPVR  K+    YL + EIPFKNFK SQ+  T++ F    PFK +D L  ASWH Q+   +  S GE + + LTQ L   S  ++  Q+L+L+KVM R+A  ++*CKA  I+*+ FL P++AHLPH +I LLM+ LN +L AN++LI+I   L  E   +SP   IGN ME   LH P H K+LARFN Q AM+ FN
Subject   2554  AK*EPNRVPEAITVAWH*KGVEIINIIIS*GFNLTT*QDFSGPGK*AF*FMNPKFARRSNCSPVRNDKNRPFLYLLDAEIPFKNFKGSQNLGTIIGFKG*CPFKSED*LLFASWHVQHPR*SCTSCGEDNSVALTQPLSAQSQFQVTDQVLKLMKVMAREA*AEI*CKASTID*D*FLYPVQAHLPHASI*LLMV*LNWNLRANEDLILIINLLTPES*GYSPIGTIGNAMEVTTLHAPGHFKKLARFNEQVAMIPFN  3327

Range 5: 2921 to 3328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 61/136(45%) 0/136(0%) Plus/Plus
Query      369  WVSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA  776
                WVS     SP L       W CQEA++S+S  LKG +  K   V + WD LKFLKGIS  +R*+    L +LTGLQ D  A+  F N +AHFPG        RL+ QLI  L  ST F C   V A GT L  + A
Subject   2921  WVSATELSSPQLVQDYLGCWTCQEAKSSQSSLLKGHYPLKPIMVPRFWDPLKFLKGISASRR*RKGLFLSFLTGLQLDLLANLGFINQNAHFPGPEKSC*VVRLKPQLIMILMISTPFQCQATVIASGTLLGSYLA  3328

Range 6: 2555 to 2833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 47/93(51%) 0/93(0%) Plus/Plus
Query        3  LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQ  281
                LK  IA   LNLAS L+C G CR   SM FPI  +GE  * S  +   M I+  LA +  LS  MRS I  CGKWA  G RN  Q M  ALHQ
Subject   2555  LKGIIATCSLNLASFLKCPGACRVVTSMAFPIVPMGEYP*LSGVRRLMMRIRSSLARRFQLS*TMRS*IEACGKWACTG*RNQSQSMVLALHQ  2833

Range 7: 2978 to 3328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 55/117(47%) 0/117(0%) Minus/Minus
Query      426  C*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*P  776
                C*  +Q SA+S++   A ++C*+ Q+ NQL  QS +      TRKMS+ I E   C  I*L+PCK  Q+    LS * *NPL*KLQ IP   D ++F    PLQ  G T  CFLA P
Subject   2978  C*VRTQQSARSNYRRLALKRC*NHQYHNQLRLQSDNLARLLWTRKMSILIYEP*VCQKI*LQPCKK*QK*TLPLSS*C*NPL*KLQRIPEPWDHNRFQGIVPLQE*GLTAFCFLACP  3328

Range 8: 2699 to 2878 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 33/60(55%) 0/60(0%) Minus/Minus
Query      147  P*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHH  326
                P*T ESY K+S ++ LM*S  H*L+ IS    GPFATC D ASH   Q    G**+ D H
Subject   2699  P*TYESYGKRSMSRDLM*S*YH*LRLISLPRAGPFATCFDLASHGLTQLEPAG**RPDPH  2878

Range 9: 2555 to 2665 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/37(59%) 0/37(0%) Minus/Minus
Query        3  LSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ  113
                LSH  NWK HG   SA P A Q+TRQVQ + CN  LQ
Subject   2555  LSHWNNWKRHGSDYSACPWAFQKTRQVQ*ASCNDSLQ  2665

Range 10: 2943 to 3269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 51/109(47%) 0/109(0%) Plus/Plus
Query      391  IRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQH  717
                +RH W R +  +G+AKKQ+ V+P  *RG    N L S+  GI+*SF*RGFQ+ +DR   + C+ LQG + I  Q   S I MLIFRV+  +  L D* +S*   *  QH
Subject   2943  LRHNWCRII*GAGHAKKQKAVNPHS*RGTIP*NRLWSQGSGIL*SF*RGFQHQEDRGRVYFCHFLQGCN*IFWQT*GS*IRMLIFRVQRSLARLSD*SLS*L*Y**FQH  3269

Range 11: 2556 to 2669 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 22/38(58%) 0/38(0%) Plus/Plus
Query        4  *RKPLQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESV  117
                *R+ LQ  +*TWRV *+A G+AE   PW FQL +WES+
Subject   2556  *RESLQLAH*TWRVF*NAQGHAE*SLPWRFQLFQWESI  2669

Range 12: 2706 to 2834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 23/43(53%) 0/43(0%) Plus/Plus
Query      154  SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIR  282
                S  +*P  ++* K *EA S+HVANGP   +EI+ N W+ LYIR
Subject   2706  SGLH*PAGSN*VKP*EARSKHVANGPARGKEINLNQWY*LYIR  2834

Grapevine rupestris stem pitting associated virus isolate TEMP BR replicase, 24.4 kDa protein, 12.8 kDa protein, 8.4 kDa protein, and 28 kDa protein genes, complete cds

Sequence ID: KX925556.1 Length: 8700 Number of Matches: 10

Range 1: 2543 to 3322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
535.8 bits(1163) 0.0 225/260(87%) 0/260(0%) Plus/Plus
Query        2  VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                VEGNHC LTIEP EFFEMPRGMQ N+FHGVSNC  GRVSLTFRRQKLE+DD IFI+PQVPIE NHEKLDR+MWQ+GLHGIKKSIS+NGTSFTSDLCSCFSCHNFHKFKDLINNL+LALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSILVLEGALS+ETD+GPK+LGSFEVFKGDF+IKK+E+GSIFVISY+APVRSTGKLRVHKS CSFSGS+E+LLGC IEA AD++I+DFNTF VPGDG+CFWHSVGFLLSTD
Subject   2543  VEGNHCCLTIEPDEFFEMPRGMQCNYFHGVSNCTQGRVSLTFRRQKLEEDDLIFINPQVPIELNHEKLDRSMWQLGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINNLRLALGAQGLGQCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDFGPKVLGSFEVFKGDFNIKKMEEGSIFVISYKAPVRSTGKLRVHKSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD  3322

Range 2: 2542 to 3213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
387.8 bits(840) 0.0 173/224(77%) 0/224(0%) Minus/Minus
Query        1  QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST  672
                QP+N SLDPENEH+DL*TL+LPVDLTGAL DITKMEPSSIFL+LKSPLKTS DP+  GP SVS +RAPSRT+IDCFLL GI++T DRP PVVANTTLSH P P AP+ANL+L IRSLNL*KL QEKQEQRS+VKLVP IE+DFLIP RP CHMLRSSFS*  S+GT G I I SSSS+FWR  V+DT P  QLETPWK L CIP GISKNS GSIVR Q FPST
Subject   2542  QPSNTSLDPENEHSDL*TLNLPVDLTGALYDITKMEPSSIFLMLKSPLKTSKDPRTLGPKSVSIDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH*PSPCAPKANLKLLIRSLNL*KLWQEKQEQRSEVKLVPFIEIDFLIP*RPSCHMLRSSFS*LSSIGTCGFINIRSSSSSFWRLKVRDTRP*VQLETPWK*LHCIPLGISKNSSGSIVRQQ*FPST  3213

Range 3: 3253 to 3324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 20/24(83%) 0/24(0%) Minus/Minus
Query      712  PSVLRRKPTECQKQSPSPGTGKVL  783
                PSVL +KPTECQKQ PSPGT KVL
Subject   3253  PSVLSKKPTECQKQLPSPGTEKVL  3324

Range 4: 2543 to 2884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 55/114(48%) 0/114(0%) Minus/Minus
Query        2  EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN  343
                +I+ +ILEL+K++ R+ R +V* +ACAI+ N FLDPM+  LPH ++KL MI  N HL   K  II F FLA E   + P   IGN ME + LH+PRH ++L R NC A ++S +
Subject   2543  QIIDKILELMKIVARETRAEV*GEACAIHRN*FLDPMKTQLPHASVKLFMIEFNRHLWIYKYQIIFFQFLAPEG*GYPPLSTIGNPMEVITLHSPRHFEKLIRLNC*ATVISLD  2884

Range 5: 2921 to 3322 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 58/134(43%) 0/134(0%) Minus/Minus
Query      380  VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWHSQNL*QAGPSSGEYDPI  781
                V  E + N*+PKA+ +TR+R+S+++ N  IS CL  A    L  PGK*A  FVN *   GS+W  V Y+K+G + + F+ E+P +NFK  Q+F T V F R G  K++D LF AS H  N    G    ++ PI
Subject   2921  VSTE*ETN*MPKAIAVTRYRESIKIINIIISTCLYLAT*QYLLGPGK*AL*FVNP*FTGGSNWGLV*YHKNGALLHFFDVEVPLENFKGPQNFRTKVCFDR*GTLKNQD*LFFASGHF*NFR*TGACCCKHHPI  3322

Range 6: 2673 to 3323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 103/217(47%) 0/217(0%) Minus/Minus
Query      132  RRC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQGQGSTVSCFLA*PELVTGRSQ*WRIRPYHTYPNLGHLELT*DCLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFG  782
                R+ *  +QL+AKS+  HQ Q K *+ Q+ NQ MP SG+    P TRKMS  ICE L   WI*L PC I Q+W+    F* *+P *KLQ  P   D+S F   G  Q    TV CF A  +L   R    +  PYHT   L  L+LT +   DP*T E+  K++K++GL *SLCH  K IS*SH  P ATC  QA HD  Q A    *  DH L +FG
Subject   2673  RQY*VRNQLNAKSNCRHQVQRKY*NHQYHNQHMPLSGNLAIPPWTRKMSTLICEPLIYRWI*LGPCMISQKWSPPPFF*C*SPP*KLQRTPEL*DQSLFR*IGHPQEPRLTVFCFGAFLKL*IDRGLLLQTPPYHTDLALVLLKLTSNY**DP*TYENCGKRNKSRGLR*SLCHS*KLIS*SHEDPVATCFGQAFHD*VQ*APVDL*ISDHLLPVFG  3323

Range 7: 2550 to 2639 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 14/30(47%) 0/30(0%) Minus/Minus
Query        9  NWKHHGKSCSAYPEASQRTRQVQLSGCNGF  98
                NWK HG +  A+P A ++T Q QL G + F
Subject   2550  NWKPHGSNYIAFP*AFRKTHQAQLLGNSDF  2639

Range 8: 2913 to 3323 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 63/137(46%) 0/137(0%) Plus/Plus
Query      372  VSVIGSYSPLLGPACHKFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSAPT  782
                VSVIG       P   KF  C EA+NS+S  L+ P+L K T V K W  LKF +G S  K+ +  P L*Y T  Q DP  +* FTN  AHFPG       AR RH LI  L    L L LV   AFG QL  +S  T
Subject   2913  VSVIGWCLQQQAPVYLKF*KCPEAKNSQSWFLRVPYLSKQTLVLKFWGPLKFSRGTSTSKKWRRAPFL*YHTRPQLDPPVN*GFTNQSAHFPGPRRYC*VAR*RHVLIMILMILILSLYLVTAIAFGIQLVSYSVLT  3323

Range 9: 2547 to 2843 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 49/99(49%) 0/99(0%) Plus/Plus
Query        6  KETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFL  302
                +E   A*QL+L S  +CLG C    SM FPI   G   * S AKN K MI +L   +C L+ IM+SL   CG W  MGSRN F  MAQA  QT  L  L
Subject   2547  REITVA*QLSLMSFSKCLGECNVITSMGFPIVLKGGYP*PSGAKNWKKMI*YL*IHRCLLNSIMKSLTEACGNWVFMGSRNQFL*MAQASPQTSALVSL  2843

Range 10: 2551 to 3267 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 106/239(44%) 0/239(0%) Plus/Plus
Query       10  KPLQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC  726
                K L P+N*   V  +A G A  L PW FQL     + ++  PK  R *S+ Y    A+* +S*+A* +HVA G  WDQEI+F  WHKL++RPL L  L   S VQGS +  +VS R  R   V**G + +   R + S   A KQ+TV+   *  P +RN L S + G++*SF  G Q+ K+    H C+I+QG S IHR  K SQI +LIFRV+G +  LPD G+ *   *   +F C
Subject   2551  KSLLPNN*A**VFRNA*GNAM*LLPWGFQLYSRAGIPNLQAPKTGRR*SDIYKSTGAY*TQS*KA*PKHVATGSSWDQEINFYEWHKLHLRPLLLFLLPQFS*VQGSYQ*FEVSFRSTRARSV**GGVCNNRPRSI*SFRNAPKQKTVNLGS*GCPIYRNRLWS*SSGVL*SFQGGLQHQKNGGGLHFCDIIQGPS*IHR*IKGSQIRVLIFRVQGGIARLPDRGMC*L*Y**F*YFLC  3267

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 10

Range 1: 2554 to 3333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
534.0 bits(1159) 0.0 224/260(86%) 0/260(0%) Plus/Plus
Query        2  VEGNHCSLTIEPGEFFEMPRGMQSNFFHGVSNCLSGRVSLTFRRQKLEDDDQIFISPQVPIEQNHEKLDRNMWQMGLHGIKKSISINGTSFTSDLCSCFSCHNFHKFKDLINNXXXXXXXXXXXXCDRVVFATTGTGLSQVLAMPRSKKQSILVLEGALSLETDYGPKILGSFEVFKGDFSIKKIEDGSIFVISYRAPVRSTGKLRVHKSACSFSGSRELLLGCPIEASADFEIEDFNTFPVPGDGDCFWHSVGFLLSTD  781
                VEGNHCSLTI P EFFEMPRGMQ N+FHGVSNC  GRVSLTFRRQKLEDDD IFI+PQVPIE NHEKLDR+MWQMGLHGIKKSIS+NGTSFTSDLCSCFSCHNFHKFKDLINNL+LALGAQGLG+CDRVVFATTG GLS+VL MPRSKKQSILVLEGALS+ETDYGPK+LGSFEVFKGDF IKK+E+GSIFVI+Y+AP+RSTG+LRVH S CSFSGS+E+LLGC IEA AD++I+DFNTF VPGDG+CFWHSVGFLLSTD
Subject   2554  VEGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIFINPQVPIELNHEKLDRSMWQMGLHGIKKSISMNGTSFTSDLCSCFSCHNFHKFKDLINNLRLALGAQGLGQCDRVVFATTGPGLSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFQIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTD  3333

Range 2: 2553 to 3224 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
379.1 bits(821) 0.0 170/224(76%) 0/224(0%) Minus/Minus
Query        1  QPNNNSLDPENEHADL*TLSLPVDLTGAL*DITKMEPSSIFLILKSPLKTSNDPKIFGP*SVSKERAPSRTRIDCFLLLGIARTCDRPVPVVANTTLSHLPKPWAPRANLRLFIRSLNL*KL*QEKQEQRSDVKLVPLIEMDFLIPWRPICHMLRSSFS*FCSMGTWGLIKI*SSSSNFWRRNVKDTLPLRQLETPWKKLLCIPRGISKNSPGSIVRLQWFPST  672
                QP+N SLDPENEH++L*TL+LPVDL GAL  ITKMEPSSIFLI KSPLKTS DP+ FGP*SVS +RAPSRT+IDCFLL GI++T DRP PVVANTTLSH P P APRANL+L +RSLNL*KL QEKQE RS+VKLVP IE+DFLIP RPICH+LRSSFS*  SMGT G + I SSSSNFWR  V+DT P  QLETPWK L C+P GISKNS G IVRLQ  PST
Subject   2553  QPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLI*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLDRPGPVVANTTLSH*PSPCAPRANLKLLMRSLNL*KLWQEKQEHRSEVKLVPFIEIDFLIP*RPICHILRSSFS*LSSMGTCGFMNIKSSSSNFWRLKVRDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPST  3224

Range 3: 3264 to 3335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 20/24(83%) 0/24(0%) Minus/Minus
Query      712  PSVLRRKPTECQKQSPSPGTGKVL  783
                PSVL +KPTECQKQ PSPGT KVL
Subject   3264  PSVLSKKPTECQKQLPSPGTEKVL  3335

Range 4: 2554 to 2895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 57/114(50%) 0/114(0%) Minus/Minus
Query        2  EIVYQILELVKVMTRKARTKV*CKACAIN*NGFLDPMEAHLPHVAIKLLMILLNGHLGANKNLIIIF*FLASECQRHSPTQAIGNTMEKVALHTPRHLKELARFNCQAAMVSFN  343
                ++V +ILE +KV+ R+ R  V* K  AI+ N FL+ M+ HLPH ++KL MI LNGHL   +  III   LA + Q +SP + IGN ME +ALH PRH ++L   NCQAAM++ N
Subject   2554  QVVDEILEFMKVVARETRA*V*GKTRAIHRNRFLNSMKTHLPHTSVKLFMIELNGHLWIYEYQIIILQLLAPKGQGYSPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITLN  2895

Range 5: 2983 to 3333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 56/117(48%) 0/117(0%) Minus/Minus
Query      431  VGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*CLNRAAQ*QLPRPGK*ACRFVNS*LACGSDWSPVRYYKDGTIFYLFNTEIPFKNFK*SQDFWTVVSF*RKGPFKDKDRLFLASWH  781
                + A+ K N +PKA+ ITRHR+SV++ N  IS CLN AA   L   GK*A   VN   A GS+W  V YYK+GT  +L N ++PF+NF+  QDFWT++ F   G FK+++ L  A  H
Subject   2983  ISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVCYYKNGTFLHLLNLKVPFENFERPQDFWTIICFYG*GTFKNQN*LLFAPRH  3333

Range 6: 3017 to 3331 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 56/105(53%) 0/105(0%) Minus/Minus
Query      465  RC*EESQLSAKSSHHHQAQEKC*SLQFRNQLMPQSGSPITTPSTRKMSMQICELLACLWI*LEPCKILQRWNHLLSF*Y*NPL*KLQMIPRFLDRSQFLKKGPLQ  779
                +C* ++Q +AKS+ HHQAQ KC*+ Q+ NQ MPQSGS    P  RKMS+  CE   C WI*L PC +LQ+WN   S *+ +PL*KL+  P  LD + FL  G LQ
Subject   3017  QC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCMLLQKWNLPPSS*FESPL*KLRKTPGLLDHNLFLWIGHLQ  3331

Range 7: 2555 to 2890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 53/112(47%) 0/112(0%) Minus/Minus
Query        3  CLSDP*TCESYDKKSKNKGLM*SLCH*LKWIS*SHGGPFATCCDQASHDFAQWALGG**KFDHHLLIFGVGMSKTLSHSGNWKHHGKSCSAYPEASQRTRQVQLSGCNGFLQ  338
                C  DP*  ES  K++K+ GL *+ CH  K IS* H  P AT   QA HD AQWA    *  +HH   FG   S  L+ + NWK HG +C A P A ++T   QLSGCN + Q
Subject   2555  C**DP*IYESCGKRNKSIGLR*NSCHS*K*IS*FHEDPSATYFGQAFHD*AQWAPVDL*ISNHHPPTFGA*RSGILALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQ  2890

Range 8: 2972 to 3328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 58/119(49%) 0/119(0%) Plus/Plus
Query      420  KFWLCQEARNSRSLSLKGPFL*KLTTVQKSWDHLKFLKGISVLKR*KMVPSL*YLTGLQSDPQAS*EFTNLHAHFPGRGSCYWAARLRHQLISKLKTSTLFLCLVMVTAFGTQLAFFSA  776
                KF  C  A++++   LK P+ *K   VQKSW   KF KG   L+R + VP L*  T  Q DP A * FT  +AHFP       AARLRH LI  L   TL LCLVM  AFG  L F+ A
Subject   2972  KF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLSKFSKGTFKLRRWRKVPFL**HTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLA  3328

Range 9: 2555 to 2854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 48/100(48%) 0/100(0%) Plus/Plus
Query        3  LKETIAA*QLNLASSLRCLGVCRATFSMVFPIA*VGECL*HSDAKN*KMMIKFLLAPKCPLSKIMRSLIATCGKWASMGSRNPFQLMAQALHQTFVLAFL  302
                L+  IAA*QL   S  +CLG C A  SM FPI   GE  *   AK+ +MMI +    +CPLS IM+SL   CG+W  M  RN F  MA+ L QT+ L  L
Subject   2555  LRVIIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGEYP*PLGAKSWRMMI*YS*IHRCPLSSIMKSLTEVCGRWVFMELRNLFL*MARVLPQTYALVSL  2854

Range 10: 2568 to 3278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 100/237(42%) 0/237(0%) Plus/Plus
Query       16  LQPDN*TWRVL*DASGYAEQLFPWCFQLPEWESVFDIPTPKIRR**SNFY*PPSAH*AKS*EA*SQHVANGPPWDQEIHFN*WHKLYIRPXXXXXXXXXXQVQGSDKQSQVSSRCPRFG*V**GRIRHYWDRPVTSSGYAKKQETVDPCP*RGPFFRN*LRSKNLGII*SF*RGFQY*KDRRWFHLCNILQGSSQIHRQAKSSQICMLIFRVEGVVIGLPD*GIS*FRN*RLQHFSC  726
                LQPDN    V  +A G+A QL PW FQL    S+ D+  PK+  ** + +    AH*A+S*+A* ++VA+G  W+ EI+F  WH+ Y+RP+ L  L  LS +QGS +Q ++  R  R   V* G + +     + S   A +Q+ ++   *R P  RN L SK+ G+  SF RG   *+D   FH CN +QG + IH Q + SQ  MLIFR++G +  LPD*G+ *   *   HF C
Subject   2568  LQPDNWAK*VFRNA*GHAMQLLPWGFQLYARASIPDL*APKVGG**FDIHKSTGAH*AQS*KA*PKYVADGSSWN*EIYFYEWHEFYLRPMLLFLLPQLS*IQGSHQQLEIGPRSTRARSV*QGCVCNNRSWSI*SFRNASEQKAINFGS*RCPIHRNRLWSKSPGVFRSFQRGLSN*EDGGRFHFCNNIQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLC  3278

Nucleotide Sequence (123 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
13
26
39
52
65
78
91
104
117
123

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 5199 to 5318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 39/40(98%) 0/40(0%) Minus/Minus
Query        2  CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGIW  121
                CSSKNCWVVS*PHLTSRCSFNAIFPTHL LVDSKLLNGIW
Subject   5199  CSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIW  5318

Range 2: 5200 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 39/40(98%) 0/40(0%) Plus/Plus
Query        3  HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH  122
                HIPLSNLESTR RWVGKMALKEHREVRCGYETTQQFFDEH
Subject   5200  HIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEH  5319

Range 3: 5198 to 5320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 38/41(93%) 0/41(0%) Minus/Minus
Query        1  CVRQRTVGSFHNHISLHGVPSTPSFQPT*PWLIPSYLMGYG  123
                CV QRTVGSFHNHISLHGVPSTPSFQPT PW IPSYLMGYG
Subject   5198  CVHQRTVGSFHNHISLHGVPSTPSFQPTWPWSIPSYLMGYG  5320

Range 4: 5200 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 37/40(92%) 0/40(0%) Minus/Minus
Query        3  VFVKELLGRFITTSHFTVFLQRHLSNPPDPG*FQVT*WDM  122
                VF+KELLGRFITTSHFTVFLQRHLSNPP PG FQVT*WDM
Subject   5200  VFIKELLGRFITTSHFTVFLQRHLSNPPGPGRFQVT*WDM  5319

Range 5: 5198 to 5320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 38/41(93%) 0/41(0%) Plus/Plus
Query        1  PISH*VTWNQPGSGGLERWR*RNTVK*DVVMKRPNSSLTNT  123
                PISH*VTWN+PG GGLERWR*RNTVK*DVVMKRPNSSL NT
Subject   5198  PISH*VTWNRPGPGGLERWR*RNTVK*DVVMKRPNSSLMNT  5320

Range 6: 5199 to 5318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 38/40(95%) 0/40(0%) Plus/Plus
Query        2  PYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RT  121
                PYPIK*LGI+QGQVGWKDGVEGTP*SEMWL*NDPTVL* T
Subject   5199  PYPIK*LGIDQGQVGWKDGVEGTP*SEMWL*NDPTVL**T  5318

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 5200 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 39/40(98%) 0/40(0%) Plus/Plus
Query        3  HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH  122
                HIPLSNLESTR RWVGKMALKEHREVRCGYETTQQFFDEH
Subject   5200  HIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEH  5319

Range 2: 5199 to 5318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 38/40(95%) 0/40(0%) Minus/Minus
Query        2  CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGIW  121
                CSSKNCWVVS*PHLTSRCSFNAIFPTHL LVDS+LLNGIW
Subject   5199  CSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIW  5318

Range 3: 5198 to 5317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 35/40(88%) 0/40(0%) Minus/Minus
Query        1  VRQRTVGSFHNHISLHGVPSTPSFQPT*PWLIPSYLMGYG  120
                V QRTVGSFHNHISLHGVPS PSFQPT P LIP YLMGYG
Subject   5198  VHQRTVGSFHNHISLHGVPSMPSFQPTWPLLIPDYLMGYG  5317

Range 4: 5199 to 5318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 36/40(90%) 0/40(0%) Plus/Plus
Query        2  PYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL*RT  121
                PYPIK* GIN+GQVGWKDG+EGTP*SEMWL*NDPTVL* T
Subject   5199  PYPIK*SGINKGQVGWKDGIEGTP*SEMWL*NDPTVL**T  5318

Range 5: 5200 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 34/40(85%) 0/40(0%) Minus/Minus
Query        3  VFVKELLGRFITTSHFTVFLQRHLSNPPDPG*FQVT*WDM  122
                +F+KELLGRFITTSHFTVFLQ HLSNPP P *FQ+T*WDM
Subject   5200  MFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDM  5319

Range 6: 5198 to 5317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 35/40(88%) 0/40(0%) Plus/Plus
Query        1  PISH*VTWNQPGSGGLERWR*RNTVK*DVVMKRPNSSLTN  120
                PISH*V WNQ G GGLERW *RNTVK*DVVMKRPNSSL N
Subject   5198  PISH*VIWNQQGPGGLERWH*RNTVK*DVVMKRPNSSLMN  5317

Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome

Sequence ID: KR054734.1 Length: 8753 Number of Matches: 2

Range 1: 5200 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 39/40(98%) 0/40(0%) Plus/Plus
Query        3  HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH  122
                HIPLSNLESTR RWVGKMALKEHREVRCGYETTQQFFDEH
Subject   5200  HIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEH  5319

Range 2: 5202 to 5318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 30/39(77%) 0/39(0%) Minus/Minus
Query        5  CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGI  121
                CSSKNC VVS P  TSRCSF AIFPTHL LVDS+LL G+
Subject   5202  CSSKNC*VVSYPQRTSRCSFKAIFPTHLALVDSRLLKGM  5318

Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome

Sequence ID: KX958435.1 Length: 8743 Number of Matches: 5

Range 1: 5201 to 5320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 39/40(98%) 0/40(0%) Plus/Plus
Query        3  HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH  122
                HIPLSNLESTR RWVGKMALKEHREVRCGYETTQQFFDEH
Subject   5201  HIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEH  5320

Range 2: 5203 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 32/39(82%) 0/39(0%) Minus/Minus
Query        5  CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGI  121
                CSSKNC VVS PH TSRCSF AIFPTHL LVDSKLL G+
Subject   5203  CSSKNC*VVSYPHRTSRCSFKAIFPTHLALVDSKLLKGM  5319

Range 3: 5217 to 5321 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 19/35(54%) 0/35(0%) Minus/Minus
Query       19  CVRQRTVGSFHNHISLHGVPSTPSFQPT*PWLIPS  123
                CV +R    FH HI  HG PS P  QP *PWL P+
Subject   5217  CVHRRIAELFHTHIVPHGAPSRPFSQPI*PWLTPN  5321

Range 4: 5216 to 5320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 20/35(57%) 0/35(0%) Minus/Minus
Query       18  VFVKELLGRFITTSHFTVFLQRHLSNPPDPG*FQV  122
                VF++ELL  FI TS+ TV LQ H  NP  PG* Q+
Subject   5216  VFIEELLSCFIPTSYLTVLLQGHFPNPSSPG*LQI  5320

Range 5: 5221 to 5310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 16/30(53%) 0/30(0%) Plus/Plus
Query       23  GINQGQVGWKDGVEGTP*SEMWL*NDPTVL  112
                G+NQG +GW++G+EG P*  MW+*N+  +L
Subject   5221  GVNQG*MGWENGLEGAP*GTMWV*NNSAIL  5310

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 3

Range 1: 5200 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 38/40(95%) 0/40(0%) Plus/Plus
Query        3  HIPLSNLESTRVRWVGKMALKEHREVRCGYETTQQFFDEH  122
                HIPLSNLESTR RWVGKMALKEHREVRCGYE TQQFFDEH
Subject   5200  HIPLSNLESTRARWVGKMALKEHREVRCGYEVTQQFFDEH  5319

Range 2: 5202 to 5318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 26/39(67%) 0/39(0%) Minus/Minus
Query        5  CSSKNCWVVS*PHLTSRCSFNAIFPTHLTLVDSKLLNGI  121
                CSSKNC V S P  TSRCSF AI PT   LVDS+LL G+
Subject   5202  CSSKNC*VTSYPQRTSRCSFKAILPTQRALVDSRLLRGM  5318

Range 3: 5200 to 5319 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 18/40(45%) 0/40(0%) Minus/Minus
Query        3  VFVKELLGRFITTSHFTVFLQRHLSNPPDPG*FQVT*WDM  122
                VF+K+LL  FI+T+H  VF Q H ++P  P   Q+ * D+
Subject   5200  VFIKKLLSYFISTTHLPVFFQGHFTHPAGPCRLQIA*GDV  5319

Nucleotide Sequence (327 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
327

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8

Range 1: 578 to 901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
259.0 bits(559) 0.0 106/108(98%) 0/108(0%) Minus/Plus
Query        2  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP  325
                LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WHGVIIMNNLVKALSTFEFVG+YSVLRFP
Subject    578  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFP  901

Range 2: 576 to 902 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
246.7 bits(532) 0.0 104/109(95%) 0/109(0%) Plus/Minus
Query        1  LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V  327
                LEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTTQKLSTSSC YF*LGTAH+CSVLQLPLHSSFQL TRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V
Subject    576  LEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTTQKLSTSSCVYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V  902

Range 3: 577 to 900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.5 bits(499) 0.0 104/108(96%) 0/108(0%) Minus/Plus
Query        3  THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS  326
                THLGENLHCS*NG*PGELH**LCN*GILCLQAGRV+N*NDE*RGS*STLQLCAVPS*K* QDEVLNFWVV*SYRLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQIS
Subject    577  THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*TQDEVLNFWVV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQIS  900

Range 4: 577 to 900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
228.8 bits(493) 0.0 106/108(98%) 0/108(0%) Plus/Minus
Query        3  GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                GNLSTL* PTNSNVDKALTKLFIIITPCQ LKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS
Subject    577  GNLSTL*IPTNSNVDKALTKLFIIITPCQILKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  900

Range 5: 716 to 901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 60/62(97%) 0/62(0%) Plus/Minus
Query        2  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVVC  187
                WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLV ISN*EPHT+VVC
Subject    716  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVFISN*EPHTVVVC  901

Range 6: 578 to 676 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 33/33(100%) 0/33(0%) Plus/Minus
Query      227  AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE  325
                AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE
Subject    578  AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE  676

Range 7: 576 to 827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 81/84(96%) 0/84(0%) Minus/Plus
Query       76  NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  327
                NSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS QLK**MKRKLKHTT VCGS*LEI+TR*GAQFLGCLKL*IRP*VFGMV*
Subject    576  NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEINTR*GAQFLGCLKL*IRP*VFGMV*  827

Range 8: 867 to 902 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Plus
Query        1  SLWVFIACSDFQ  36
                SLWVFIACSDFQ
Subject    867  SLWVFIACSDFQ  902

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7

Range 1: 6322 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.6 bits(558) 0.0 107/108(99%) 0/108(0%) Minus/Plus
Query        2  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP  325
                LIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP
Subject   6322  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP  6645

Range 2: 6320 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.1 bits(546) 0.0 107/109(98%) 0/109(0%) Plus/Minus
Query        1  LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V  327
                LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAH+CSVLQLPLHSSFQL TRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V
Subject   6320  LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLPTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*V  6646

Range 3: 6321 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.3 bits(518) 0.0 107/108(99%) 0/108(0%) Minus/Plus
Query        3  THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS  326
                THLGENLHCS*NG*PGELH**LCN*GILCLQAGRV N*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS
Subject   6321  THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVGN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS  6644

Range 4: 6321 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.6 bits(497) 0.0 107/108(99%) 0/108(0%) Plus/Minus
Query        3  GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISI NSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS
Subject   6321  GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIANSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  6644

Range 5: 6322 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
222.8 bits(480) 0.0 105/108(97%) 0/108(0%) Plus/Minus
Query        2  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVVCXXXXXXXXXXXXXAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE  325
                WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHT+VVCFNFLFIHHFN  LAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE
Subject   6322  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCFNFLFIHHFNCQLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE  6645

Range 6: 6320 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 82/84(98%) 0/84(0%) Minus/Plus
Query       76  NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  327
                NSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS+QLK**MKRKLKHTT VCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*
Subject   6320  NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASWQLK**MKRKLKHTTTVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  6571

Range 7: 6611 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Plus
Query        1  SLWVFIACSDFQ  36
                SLWVFIACSDFQ
Subject   6611  SLWVFIACSDFQ  6646

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8

Range 1: 6322 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
252.2 bits(544) 0.0 106/108(98%) 0/108(0%) Minus/Plus
Query        2  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP  325
                LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWH  IIMNNLVKALSTFEFVGVYSVLRFP
Subject   6322  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFP  6645

Range 2: 6326 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.0 bits(476) 0.0 93/107(87%) 0/107(0%) Plus/Minus
Query        1  LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK  321
                LEI*ARYKHPQTQT*TKL*LSYS**S++AKHLRPNL*LQT QKLS SSCAYF* GTAH+CS LQLPLHSSFQL TRP CRHR PQLH+YQC+ PG PFHEQCKFSPK
Subject   6326  LEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL*LQTIQKLSISSCAYF*PGTAHSCSALQLPLHSSFQLTTRPTCRHRTPQLHNYQCNFPGCPFHEQCKFSPK  6646

Range 3: 6321 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 103/108(95%) 0/108(0%) Plus/Minus
Query        3  GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                GNLSTL*TPTNSNVDKALTKLFIII  CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSP+L*A*DTSIA*LSMQFSRLPISRAMQILSQ++
Subject   6321  GNLSTL*TPTNSNVDKALTKLFIII**CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN  6644

Range 4: 6327 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.6 bits(462) 0.0 95/106(90%) 0/106(0%) Minus/Plus
Query        3  LGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS  320
                LGENLHCS*NG PG+LH**LCN*G+LCLQ GRV+N*NDE*RGS*S LQLCAVP *K*AQDE+LNFW+V*SYRLGLKCLA  DYYE*LS*SFVYV*VCGCL*RAQIS
Subject   6327  LGENLHCS*NGQPGKLH**LCN*GVLCLQVGRVVN*NDE*RGS*SALQLCAVPG*K*AQDEMLNFWIV*SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQIS  6644

Range 5: 6463 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 55/61(90%) 0/61(0%) Plus/Minus
Query        2  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVV  184
                WKSEHAINTHKLKRRQSFN*VIHNN  MPNT*GLIYSFKQ RN*A HLVLISN EPHT+VV
Subject   6463  WKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV  6645

Range 6: 6322 to 6420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 27/33(82%) 0/33(0%) Plus/Minus
Query      227  AQPVGIGYLNCIVINAVLQVTHFTSNANSLPNE  325
                AQPVGIG+LNCI+INA+ QV HFTSNANSLPN+
Subject   6322  AQPVGIGHLNCIIINAIFQVAHFTSNANSLPNQ  6420

Range 7: 6326 to 6568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 68/81(84%) 0/81(0%) Minus/Plus
Query       79  FGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV  321
                FGREFALLVKW TW+ ALI MQLR PMPTGWAS QLK**MKRKLK TT VCGS LEISTR* AQFL CLKL*IRP*VFG++
Subject   6326  FGREFALLVKWATWKIALIIMQLRCPMPTGWASCQLK**MKRKLKRTTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFGII  6568

Range 8: 6611 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Plus
Query        1  SLWVFIACSDFQ  36
                SLWVFIACSDFQ
Subject   6611  SLWVFIACSDFQ  6646

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 7

Range 1: 6322 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
245.3 bits(529) 0.0 101/108(94%) 0/108(0%) Minus/Plus
Query        2  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP  325
                LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALSTFEFVGV+SVL+FP
Subject   6322  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVLKFP  6645

Range 2: 6321 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 86/108(80%) 0/108(0%) Plus/Minus
Query        3  GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                GNLSTL TPTNSNVD ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+D+SPS  A*+TSIA*LS+QFSRLPIS AM I SQ++
Subject   6321  GNLSTLKTPTNSNVDNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMDSSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN  6644

Range 3: 6324 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 56/107(52%) 0/107(0%) Minus/Plus
Query        3  HLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS  323
                +LG ++HC  +G*PGEL+* LC+ G+LC+ AGR I+*ND+   S   L LC +   + A DE+LNF  +*S  LGLK LA  +YYE* S*S V +*VC C   A IS
Subject   6324  NLGADMHC*GDG*PGELY*QLCDRGLLCVPAGRAIH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVNI*VCRCFQCA*IS  6644

Range 4: 6463 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 34/61(56%) 0/61(0%) Plus/Minus
Query        2  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVV  184
                WK +H  NT+KLK  Q FN*+IHN   MPNT*GLI  FK   N*A HL+L+ + E +TI++
Subject   6463  WKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIM  6645

Range 5: 6325 to 6420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 18/32(56%) 0/32(0%) Plus/Minus
Query      227  AQPVGIGYLNCIVINAVLQVTHFTSNANSLPN  322
                +QPV IG L  I++N +LQVTH  SNA  LP+
Subject   6325  SQPVRIGDLYRIIVNTILQVTHLPSNAYPLPD  6420

Range 6: 6326 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 56/107(52%) 0/107(0%) Plus/Minus
Query        1  LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK  321
                LEI*A  KH QTQ  T L*L+YS* S++AK+LRPN  LQ   KLS SS A  *    HN +   L   SSFQ I  PA  HR P  H+ Q +SPGYP   QC  +P+
Subject   6326  LEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWIALPAGTHRRPLSHNCQYNSPGYPSP*QCISAPR  6646

Range 7: 6329 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 43/81(53%) 0/81(0%) Minus/Plus
Query       76  GREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  318
                G  +ALL +WVTWR  L  M+ R PM TGW SY LK** ++K +   IV  S    S R* AQF   LK  IRP*VFG++*
Subject   6329  GSGYALLGRWVTWRIVLTIMR*RSPMRTGWESYPLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*  6571

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 7

Range 1: 6322 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
244.4 bits(527) 0.0 99/108(92%) 0/108(0%) Minus/Plus
Query        2  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP  325
                LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEA+D*ALS+WH + IMNNLVKALSTFEF+GV+SVL+FP
Subject   6322  LIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFP  6645

Range 2: 6321 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 88/108(81%) 0/108(0%) Plus/Minus
Query        3  GNLSTL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMS  326
                GNLSTL TP NS VD ALTKLFII+  CQ LKA*S ASN PEIEHLILCLFLTRN TQL*CASTSSS IIS+D+SP+L A*DTSIA*LSMQFSRLPIS AM I SQ+S
Subject   6321  GNLSTLKTPINSKVDNALTKLFIILKQCQILKA*STASNRPEIEHLILCLFLTRNLTQL*CASTSSSVIISMDSSPNLYA*DTSIA*LSMQFSRLPISLAMHIRSQIS  6644

Range 3: 6460 to 6645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 40/62(65%) 0/62(0%) Plus/Minus
Query        2  WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTIVVC  187
                WK +H  NT+K +  Q FN +IHN  TMPNT*GLI  FK   N*APHL+L+ N*EPHTIVVC
Subject   6460  WKFKHTENTYKFEG*QCFNQIIHNTQTMPNT*GLINRFK*A*N*APHLMLVPN*EPHTIVVC  6645

Range 4: 6325 to 6417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 16/31(52%) 0/31(0%) Plus/Minus
Query      230  QPVGIGYLNCIVINAVLQVTHFTSNANSLPN  322
                Q + IG+L  I+INAVL + H +  A SLPN
Subject   6325  QSICIGHLYRIIINAVL*IAHLSGYAYSLPN  6417

Range 5: 6326 to 6646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 58/107(54%) 0/107(0%) Plus/Minus
Query        1  LEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHNCSVLQLPLHSSFQLITRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK  321
                LEI*A  KH   +  T L* +YS* S++AK+LRPN  LQ   KLSTSS A  *LGT+HNCSV   P  SSF+ I  P   HR P  H+YQCSS   P    C F+PK
Subject   6326  LEI*AH*KHL*IRRLTML*PNYS*YSNNAKYLRPNQPLQIGLKLSTSSYACS*LGTSHNCSVPPPPPLSSFRWIAHPIYMHRTPLSHNYQCSSLDCPSLWLCIFAPK  6646

Range 6: 6321 to 6644 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 56/108(52%) 0/108(0%) Minus/Plus
Query        3  THLGENLHCS*NG*PGELH**LCN*GILCLQAGRVIN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIS  326
                T+LG N+H   +G   ELH**LC+ G+LC+  G  I+ ND+  G   TLQLC VPS*+ A DEVLNF  +*S  LGLK LA  +YYE*  *S V + +  C   A IS
Subject   6321  TNLGANMHSQRDGQSRELH**LCDRGVLCI*IG*AIHRNDDRGGGGGTLQLCEVPS*EQA*DEVLNFRPI*SG*LGLKYLALFEYYE*FG*SIVNLRIYRCFQCA*IS  6644

Range 7: 6320 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 49/84(58%) 0/84(0%) Minus/Plus
Query       76  NSFGREFALLVKWVTWRTALITMQLRYPMPTGWASYQLK**MKRKLKHTTIVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  327
                N FG E+A   +W   RTALI M+ R PM   W SY  K** +R+ +HTTIV GS*L  S R*GAQF   LK  IRP*VFG+V*
Subject   6320  N*FGSEYA*PERWAI*RTALIIMR*RCPMHIDWVSYPSK**QRRRWRHTTIV*GS*LGTSIR*GAQFQAYLKRLIRP*VFGIV*  6571

Nucleotide Sequence (1262 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
127
254
381
508
635
762
889
1016
1143
1262

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 10

Range 1: 1516 to 2775 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
975.2 bits(2122) 0.0 406/420(97%) 0/420(0%) Minus/Minus
Query        2  IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ  1261
                IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRG+ISDHLSFGWSSLNATL FKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMD+PHDFCIVHAKSAQGSHFP YSSNFRPIQVTEGTLSN G*SLRATN+RAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPL FSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARH+T+LTMIINFFTNMANP*SLQTS HFLNC*SKRLTWATILN*Y*LPCSPYETTMI+TIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRP NALHVEIDVCCPLSMANLTFLGN A SQCPSQSSMG**FWPNSQ
Subject   1516  IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGDISDHLSFGWSSLNATLWFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDVPHDFCIVHAKSAQGSHFPNYSSNFRPIQVTEGTLSN*G*SLRATNVRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLSFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHMTMLTMIINFFTNMANP*SLQTSQHFLNC*SKRLTWATILN*Y*LPCSPYETTMIITIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPYNALHVEIDVCCPLSMANLTFLGNEALSQCPSQSSMG**FWPNSQ  2775

Range 2: 1750 to 2775 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
788.7 bits(1715) 0.0 337/342(99%) 0/342(0%) Plus/Plus
Query      236  **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  1261
                **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALAST+KEVLGGLKALGVSHIGEEIDYHC*+C+MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISE DQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN
Subject   1750  **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTIKEVLGGLKALGVSHIGEEIDYHC*HCHMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  2775

Range 3: 1516 to 1713 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.5 bits(320) 0.0 63/66(95%) 0/66(0%) Plus/Plus
Query        2  LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF  199
                LRIGPKLSPH*RLAWALA C IS*ESQICHTQGTTYINFHMEGV GTAPKA*HIVVPNSHSQALGF
Subject   1516  LRIGPKLSPH*RLAWALA*CFIS*ESQICHTQGTTYINFHMEGVIGTAPKA*HIVVPNSHSQALGF  1713

Range 4: 1515 to 2774 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
904.2 bits(1967) 0.0 406/420(97%) 0/420(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ  1260
                PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W* SWLSHKGYRGVNIN*ELWPK*GACFN+*GS  RFEGFRG*PYW*RN*LSLL L YGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*K+EGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIR RSV*RCDRYCTPLL* W*LSKINL+WKESLL*PE*V*NCWNN GSDYPAQILHVLCKNRVE+PSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*+KGWR*ESSNQS*DGR*Y LF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ
Subject   1515  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W**SWLSHKGYRGVNIN*ELWPK*GACFNN*GSVGRFEGFRG*PYW*RN*LSLLTLSYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KKEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRERSV*RCDRYCTPLL*RW*LSKINLNWKESLL*PE*V*NCWNN*GSDYPAQILHVLCKNRVEHPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*TKGWR*ESSNQS*DGR*YRLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ  2774

Range 5: 1788 to 2774 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
725.0 bits(1576) 0.0 323/329(98%) 0/329(0%) Minus/Minus
Query      274  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  1260
                LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*S SDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*Q *Q**SISSPIWLTPKAFKPP+TSL VEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP
Subject   1788  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPNTSLIVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  2774

Range 6: 1515 to 1736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 71/74(96%) 0/74(0%) Minus/Minus
Query        1  HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR  222
                HKILRLTKKPRAWE*LFGTTICYAFGAVP+TPSMWKLMYVVP*VWQI*LS*EM+H ANAQANRQWGDSFGPIRR
Subject   1515  HKILRLTKKPRAWE*LFGTTICYAFGAVPITPSMWKLMYVVP*VWQI*LS*EMKH*ANAQANRQWGDSFGPIRR  1736

Range 7: 1517 to 2734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
847.4 bits(1843) 0.0 394/406(97%) 0/406(0%) Plus/Plus
Query        3  CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAPI  1220
                CELGQNYHPIDDWLGHWL A+FPKKVKFAILRGQHTSISTWRAL GRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMV IMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC EV*RL*GLAILVKKLIIIV IVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFLLK RGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIAL LVALKDQP*LERVPSVT*IGLKLLE* GK*LPCADFACTMQKSCG SIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARL QRVALRELQPKLRWSLI PLLRSRCSDKLWLKESGAPI
Subject   1517  CELGQNYHPIDDWLGHWLSASFPKKVKFAILRGQHTSISTWRAL*GRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVIIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKCWEV*RL*GLAILVKKLIIIVNIVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFLLKERGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALTLVALKDQP*LERVPSVT*IGLKLLE*LGK*LPCADFACTMQKSCGTSIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLNQRVALRELQPKLRWSLISPLLRSRCSDKLWLKESGAPI  2734

Range 8: 2279 to 2776 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
368.6 bits(798) 0.0 159/166(96%) 0/166(0%) Minus/Minus
Query      765  Y**EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLEST  1262
                Y**EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKR+Y*RPSQLWLELS*RHPL+QARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDG STRFLHSTCKICAG*SLP LFQQFQTYSGHRRDSFQ RLIFESYQ QSNGVQYLSQR*TDR LICQTHRMLEST
Subject   2279  Y**EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRRY*RPSQLWLELS*RHPLVQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGCSTRFLHSTCKICAG*SLP*LFQQFQTYSGHRRDSFQLRLIFESYQRQSNGVQYLSQR*TDRSLICQTHRMLEST  2776

Range 9: 1517 to 1918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
289.7 bits(626) 0.0 132/134(99%) 0/134(0%) Minus/Minus
Query        3  GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA  404
                GHNSQLILTPL*PL*DNHD HHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRK STKPMPKPIVNGVIVLAQFA
Subject   1517  GHNSQLILTPL*PL*DNHDYHHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRK*STKPMPKPIVNGVIVLAQFA  1918

Range 10: 1979 to 2248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.8 bits(456) 0.0 87/90(97%) 0/90(0%) Minus/Minus
Query      465  EIAQQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG*  734
                EIAQQTRASTPPACPQFLKEHFQ*PS F*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPY+N NNDNQFLHQYG*
Subject   1979  EIAQQTRASTPPACPQFLKEHFQ*PSFF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYDNVNNDNQFLHQYG*  2248

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 10

Range 1: 7260 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
972.5 bits(2116) 0.0 402/420(96%) 0/420(0%) Minus/Minus
Query        2  IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ  1261
                +DKSTSSSATNLSKIG PLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATL FKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGT SNQG*SLRAT+IRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPF KNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARH+T+LTMIINFFTNMANP*SLQTS HFLNC*SKRLTWATILN*Y*LPCSPYETTMI+TIIAVDMCKD*GCNCSAYKNQNSKQIVHIW PLILLQLLKAQNSQTDQ+AQSLGMTVWDHNMLCFWC P NALHVEIDVCCPL+MANLTFL NAAPSQCP QSS G**FWPNSQ
Subject   7260  VDKSTSSSATNLSKIGTPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLWFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTFSNQG*SLRATDIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFGKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHMTMLTMIINFFTNMANP*SLQTSQHFLNC*SKRLTWATILN*Y*LPCSPYETTMIITIIAVDMCKD*GCNCSAYKNQNSKQIVHIWMPLILLQLLKAQNSQTDQRAQSLGMTVWDHNMLCFWCHPYNALHVEIDVCCPLNMANLTFLENAAPSQCPRQSSTG**FWPNSQ  8519

Range 2: 7259 to 8518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
915.2 bits(1991) 0.0 409/420(97%) 0/420(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ  1260
                PANWAKTITPLTIG+GIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W* SWLSHKGYRGVNIN*ELWPK*GACFNS*GSA RFEGFRG*PYW*RN*LSLL L YGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIR RSV*RCDRYCTPLL*C *LSKINLDWK+SLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*+KGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAE QSWRD*WRNCWCSYQ
Subject   7259  PANWAKTITPLTIGVGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W**SWLSHKGYRGVNIN*ELWPK*GACFNS*GSAGRFEGFRG*PYW*RN*LSLLTLSYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSCQKEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRERSV*RCDRYCTPLL*CR*LSKINLDWKKSLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*TKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAEFQSWRD*WRNCWCSYQ  8518

Range 3: 7494 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
785.1 bits(1707) 0.0 337/342(99%) 0/342(0%) Plus/Plus
Query      236  **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  1261
                **Y*R PYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*+C+MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISE DQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN
Subject   7494  **Y*RHPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HCHMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  8519

Range 4: 7260 to 7454 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 60/65(92%) 0/65(0%) Plus/Plus
Query        2  LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALG  196
                LRIGPKLSP *RLAWALAWCCI *ESQICH QGTTYINFHMEGV G APKA*HIVVPNSHSQALG
Subject   7260  LRIGPKLSPR*RLAWALAWCCIF*ESQICHIQGTTYINFHMEGVIGMAPKA*HIVVPNSHSQALG  7454

Range 5: 7532 to 8518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
730.5 bits(1588) 0.0 326/329(99%) 0/329(0%) Minus/Minus
Query      274  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  1260
                LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*S SDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*Q *Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP
Subject   7532  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  8518

Range 6: 7259 to 7480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 67/74(91%) 0/74(0%) Minus/Minus
Query        1  HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR  222
                HKILRLTK+PRAWE*LFGTTICYAFGA+P+TPSMWKLMYVVP*+WQI*LS*+MQHQANA ANRQ GDSFGPIRR
Subject   7259  HKILRLTKEPRAWE*LFGTTICYAFGAIPITPSMWKLMYVVP*IWQI*LS*KMQHQANAHANRQRGDSFGPIRR  7480

Range 7: 7261 to 8478 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
843.3 bits(1834) 0.0 390/406(96%) 0/406(0%) Plus/Plus
Query        3  CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAPI  1220
                CELGQNYHP+DDW GHWLGAAF KKVKFAI RGQHTSISTWRAL G HQKHNILWSQTVIPKLWA WSV*EFCAFNNCNSING+HICTICLEFWFL*ALQLQP*SLHMSTAIMV IMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC EV*RL*GLAILVKKLIIIV IVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFL KGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALM VALKDQP*LE+VPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARL QRVALRELQPKLRWSLILPLLRSRCSDKLWLKESG PI
Subject   7261  CELGQNYHPVDDWRGHWLGAAFSKKVKFAIFRGQHTSISTWRAL*GWHQKHNILWSQTVIPKLWALWSV*EFCAFNNCNSINGIHICTICLEFWFL*ALQLQP*SLHMSTAIMVIIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKCWEV*RL*GLAILVKKLIIIVNIVIWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKVLTNLLFLVAFLPKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMSVALKDQP*LEKVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLNQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGVPI  8478

Range 8: 8023 to 8517 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
375.4 bits(813) 0.0 160/165(97%) 0/165(0%) Minus/Minus
Query      765  **EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLEST  1259
                **EHQQFRH*SLQDW+SAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPL+QARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRD FQSRLIFESY+HQSNGVQYLSQR*TDR LICQTHRMLEST
Subject   8023  **EHQQFRH*SLQDWNSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLVQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDFFQSRLIFESYRHQSNGVQYLSQR*TDRSLICQTHRMLEST  8517

Range 9: 7261 to 7662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.6 bits(630) 0.0 131/134(98%) 0/134(0%) Minus/Minus
Query        3  GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA  404
                GHNSQLILTPL*PL*DNHD HHYCCRHVQGLGLQLQRLQEPEFQTDSTYM+AVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMP PIVNGVIVLAQFA
Subject   7261  GHNSQLILTPL*PL*DNHDYHHYCCRHVQGLGLQLQRLQEPEFQTDSTYMDAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPTPIVNGVIVLAQFA  7662

Range 10: 7723 to 7992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 87/90(97%) 0/90(0%) Minus/Minus
Query      465  EIAQQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG*  734
                EIAQQTRASTPPACPQFLKEHFQ*PSSF QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPY+N NNDNQFLHQYG*
Subject   7723  EIAQQTRASTPPACPQFLKEHFQ*PSSFWQECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYDNVNNDNQFLHQYG*  7992

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9

Range 1: 7260 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
912.0 bits(1984) 0.0 377/420(90%) 0/420(0%) Minus/Minus
Query        2  IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ  1261
                +DKSTSSSATN SKIGAPLSFSHSLSEHLDLKRG+ISDHLSFGWSSLNATL FKRALICD+KEEVKGCKL IFIKS LGPISGWNPRLQMD+PHDFCIVHAKSAQG HFPYYS NFR IQVTEGTLSNQG*SLRATN+RAMACNIY NVKLI L*Y RLTECSNQLIYCTFIH+I R*HNR +LQHLPHVHS *KSIFN+PLPFSK+ TK RRLVRTFRLLLSSCQLQRFQSG KSFI*LTWQPSWWA H+T+LTMIINFFTNMANP*SLQTS*HFLNC*SK LTWATI N*Y*LPCSPYETT+ +TIIAVDMCKD*GCN SAYKNQNSKQIVHIWRPLIL QLLK QNSQTDQKAQSLG TVWDHNMLCFWCRP N LHVEIDVCCPLS ANLTFLGNAAPSQCPS SSM * FWPNSQ
Subject   7260  VDKSTSSSATNFSKIGAPLSFSHSLSEHLDLKRGDISDHLSFGWSSLNATLWFKRALICDAKEEVKGCKLLIFIKSFLGPISGWNPRLQMDVPHDFCIVHAKSAQGGHFPYYSGNFRSIQVTEGTLSNQG*SLRATNVRAMACNIYCNVKLITL*YVRLTECSNQLIYCTFIHDIWR*HNRFMLQHLPHVHSL*KSIFNNPLPFSKDTTKGRRLVRTFRLLLSSCQLQRFQSGFKSFI*LTWQPSWWACHLTMLTMIINFFTNMANP*SLQTS*HFLNC*SKCLTWATIFN*Y*LPCSPYETTLTITIIAVDMCKD*GCNYSAYKNQNSKQIVHIWRPLILSQLLKVQNSQTDQKAQSLGKTVWDHNMLCFWCRPYNVLHVEIDVCCPLSTANLTFLGNAAPSQCPSLSSME*QFWPNSQ  8519

Range 2: 7494 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
772.7 bits(1680) 0.0 332/342(97%) 0/342(0%) Plus/Plus
Query      236  **Y*RPPYMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  1261
                **Y*RPPYMYYLFGILVLVGA IATLILAHVDSNNGD+ GCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*+C MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPP LGG+LAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGES ISE DQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN
Subject   7494  **Y*RPPYMYYLFGILVLVGAVIATLILAHVDSNNGDSKGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HC*MASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPALGGVLAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESDISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  8519

Range 3: 7260 to 7457 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
136.2 bits(291) 0.0 58/66(88%) 0/66(0%) Plus/Plus
Query        2  LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF  199
                LRIGPKL  H*R AWALAWCCIS*ESQIC TQGTTYINFHME V GTAPKA*HIVVP+S SQALGF
Subject   7260  LRIGPKLLLH*R*AWALAWCCIS*ESQICRTQGTTYINFHMEDVIGTAPKA*HIVVPDSLSQALGF  7457

Range 4: 7532 to 8518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
709.9 bits(1543) 0.0 316/329(96%) 0/329(0%) Minus/Minus
Query      274  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  1260
                LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*S SDM DSPNARINSSIAPSS+T GDSTTDSCFNTSRMSTVFERAFS+TLFLLAR PPR GGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*Q *Q**SISSPIWLTPKAFKPP+TSLTVEASASLGPQFSINIDSPVALMRQP LSPLLLSTCARIRVAI APTRTRIP
Subject   7532  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMSDSPNARINSSIAPSSMTFGDSTTDSCFNTSRMSTVFERAFSITLFLLARTPPRAGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQPLLSPLLLSTCARIRVAITAPTRTRIP  8518

Range 5: 7259 to 7477 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 65/73(89%) 0/73(0%) Minus/Minus
Query        1  KILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR  219
                KILRLTKKPRAWE L GTTICYAFGAVP+T SMWKLMYVVP*V QI*LS*EMQHQANAQA RQW +SFGPIRR
Subject   7259  KILRLTKKPRAWERLSGTTICYAFGAVPITSSMWKLMYVVP*VRQI*LS*EMQHQANAQAYRQWSNSFGPIRR  7477

Range 6: 7259 to 8518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
834.1 bits(1814) 0.0 382/420(91%) 0/420(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ  1260
                PANWAKT+TPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGP+QSFPSSGLFGQSENF PLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W*   LSHKGYRGVNIN*+LWPK*G CFNS*GS RRFEGFRG*PYW*RN*LSLL LL G+PTRKVAR*VK*SF* QTEIFGAGKSSKAA*RF*PTSC WW  C*KEEG+*KCSFK+CGHAGGVEA +CCAIS C+G*RCNR*VDSSIR*V HIR  S+*RC+RYCTPLL* W*LSKINLDWKESLL*PE*+*NC NNKGSD+PAQILHVLCKNRVE+PSGDGDSTR*LGQE I**K*+VCSL*LLPW HR*ERA*+KGWR*ESSNQS*DGR*Y LF*GQGAQTNYG*RKAELQSWR+*WRNCWCSYQ
Subject   7259  PANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPRQSFPSSGLFGQSENFAPLIIVIVLTASIYVLSVWNSGSCRRCNCNPNPCTCRQQ*W***GLSHKGYRGVNIN*KLWPK*GTCFNS*GSVRRFEGFRG*PYW*RN*LSLLTLLDGKPTRKVAR*VK*SF*SQTEIFGAGKSSKAA*RF*PTSCPWWCPC*KEEGY*KCSFKDCGHAGGVEA*ICCAISKCHG*RCNR*VDSSIR*V*HIRE*SI*RCNRYCTPLL*RW*LSKINLDWKESLL*PE*I*NCRNNKGSDHPAQILHVLCKNRVEHPSGDGDSTR*LGQERI**K*EVCSL*LLPWRHR*ERA*TKGWR*ESSNQS*DGR*YRLF*GQGAQTNYG*RKAELQSWRN*WRNCWCSYQ  8518

Range 7: 7261 to 8478 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
784.6 bits(1706) 0.0 363/406(89%) 0/406(0%) Plus/Plus
Query        3  CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAPI  1220
                CELGQN + IDD LGHWLGAAFPKKVKFA+LRGQHTSISTWR L GRHQKHNILWSQTV PKLWAFWSV*EFC FNNC+SINGLHICTICLEFWFL*AL LQP*SLHMSTAIMV + VVS*GLQGSQY*L+IVAQVR LLQQLRKC*EV*RL*GLAILVKKLIIIV IV W+AHQEGCQVSQMKLL+PD*NLWSWQELKSSLKVLTNLL LV  LLKGRG LKMLFQ+LWTCGRC*S +LLCYL M WMKVQ*MS*FEHSVSL YQR I+LTL+*ILHAIAL LVALKDQP*LERVPSVT*I LKL E**GK* PCADFACTMQKSCG SIWRRGFHPLIGPR+DLMKM+SLQPLTSSL SQMRARL QRVALRELQPKLRWSLI PLLRSRCSDKLWLKESGAPI
Subject   7261  CELGQNCYSIDDRLGHWLGAAFPKKVKFAVLRGQHTSISTWRTL*GRHQKHNILWSQTVFPKLWAFWSV*EFCTFNNCDSINGLHICTICLEFWFL*AL*LQP*SLHMSTAIMVIVRVVS*GLQGSQY*LKIVAQVRHLLQQLRKC*EV*RL*GLAILVKKLIIIVNIVRWQAHQEGCQVSQMKLLKPD*NLWSWQELKSSLKVLTNLLPLVVSLLKGRGLLKMLFQRLWTCGRC*SMNLLCYLQMSWMKVQ*MS*FEHSVSLTYQRVINLTLQ*ILHAIALTLVALKDQP*LERVPSVT*IDLKLPE**GK*PPCADFACTMQKSCGTSIWRRGFHPLIGPRKDLMKMRSLQPLTSSLASQMRARLNQRVALRELQPKLRWSLISPLLRSRCSDKLWLKESGAPI  8478

Range 8: 7723 to 8517 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
519.3 bits(1127) 0.0 239/265(90%) 0/265(0%) Minus/Minus
Query      465  **EHQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLESTXXXXXXXXX*EIAQQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG*  1259
                **EHQQFRH* LQDWSSAFLQP*FV*AP*PQKR+Y*RPSQLWLELS*RHPL+QARSHL* QGRSQRLQT HFH*I SWPN*RVESPSPDG STRFLHSTCKICAG SLPLLF+QFQ YSGHRRDSFQSRLIFESYQ QSNGVQYL QR* D  LICQTHRMLESTHLLHLHP*H EIAQQ  ASTPPACPQ LKEHFQ*PSSF*Q  HQ QEVG*NLQAAFELLPAPKISVW QKLHLTHLATFLVG P NN NNDNQFLHQYG*
Subject   7723  **EHQQFRH*FLQDWSSAFLQP*FV*AP*PQKRRY*RPSQLWLELS*RHPLVQARSHL*RQGRSQRLQTSHFH*ILSWPN*RVESPSPDGCSTRFLHSTCKICAGWSLPLLFRQFQIYSGHRRDSFQSRLIFESYQRQSNGVQYLLQR*IDHSLICQTHRMLESTHLLHLHP*HLEIAQQIHASTPPACPQSLKEHFQ*PSSF*QGHHQGQEVG*NLQAAFELLPAPKISVWLQKLHLTHLATFLVGLPSNNVNNDNQFLHQYG*  8517

Range 9: 7261 to 7662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.9 bits(598) 0.0 127/134(95%) 0/134(0%) Minus/Minus
Query        3  GHNSQLILTPL*PL*DNHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA  404
                GHN QLILTPL*PL*DN   HHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKG KFSD*PKSPELG DCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGV VLAQFA
Subject   7261  GHNFQLILTPL*PL*DNPYYHHYCCRHVQGLGLQLQRLQEPEFQTDSTYMEAVNTITIIKGAKFSD*PKSPELGKDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFA  7662

Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome

Sequence ID: KR528585.1 Length: 8595 Number of Matches: 13

Range 1: 7497 to 8501 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
705.3 bits(1533) 0.0 305/335(91%) 0/335(0%) Plus/Plus
Query      257  YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  1261
                YMYYLFGILVLVG  IA  ILAHVDS++G + GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVSH  EEIDYHC*   MAS  GRLPGESNEAFEARLKSLELARAQKQPEGSN PP L GILAKRKRVIENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI+EG QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSE+AGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGG+KRAPTKAEMVANIASFEV+VLRQ MAEGKRSSNLGEISGGTAGALIN
Subject   7497  YMYYLFGILVLVGIVIAIQILAHVDSSSGTHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHKVEEIDYHC*IG*MASQIGRLPGESNEAFEARLKSLELARAQKQPEGSNTPPTLSGILAKRKRVIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAEGVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEVAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTKAEMVANIASFEVQVLRQAMAEGKRSSNLGEISGGTAGALIN  8501

Range 2: 7242 to 7424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 38/61(62%) 0/61(0%) Plus/Plus
Query        2  LRIGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHS  184
                L IG +  PH* LA AL  CCIS* SQICH Q TT+INF   GVTGTA K *  V P+S S
Subject   7242  LLIGQRP*PH*LLA*ALDLCCIS*GSQICHIQETTFINFLTGGVTGTAQKV*LTVAPSSPS  7424

Range 3: 7514 to 8500 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
577.0 bits(1253) 0.0 266/329(81%) 0/329(0%) Minus/Minus
Query      274  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  1260
                L+ APAVPPLISPRLELR PSAI CLST TSKEAILATISA VGALL PPF SSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPA SDLFRSQ GL PI+VDL ELPTSEQ RAISIAT N +PS MPDSPNARI+SSIAPSS+T G+ TT SCF TS MSTVFE AFS+TL  LARMP R GG LEPSGCF*ALA+S DFS ASKASFDSPG+LP  LAI   *Q**SISS +WLTPKAFKPP+TS TV+A ASLGPQFSI IDSPVAL++QP   PLLLST ARI +AI  PT+TRIP
Subject   7514  LMSAPAVPPLISPRLELRLPSAIACLST*TSKEAILATISAFVGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPATSDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTPSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSITLLRLARMPLRVGGVLEPSGCF*ALANSSDFSRASKASFDSPGSLPI*LAIQPI*Q**SISSTLWLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALIKQPW*VPLLLST*ARIWMAITIPTKTRIP  8500

Range 4: 7241 to 7462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 44/74(59%) 0/74(0%) Minus/Minus
Query        1  HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR  222
                HKILRL K  R  E L G T+ Y F AVPVTP + KLM VV *+WQI*L  EMQH++NA AN  WG    PI R
Subject   7241  HKILRLAKYSRTGEGLLGATVSYTFCAVPVTPPVRKLMNVVS*IWQI*LPQEMQHKSNA*ANS*WGYGLCPISR  7462

Range 5: 7979 to 8500 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
253.5 bits(547) 0.0 116/174(67%) 0/174(0%) Plus/Plus
Query      739  CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ  1260
                C+G*RCNR  DS I *+WH   R++*   RY T LL*CW*L ++N D +ES+L*P+ + + W+ KG D+   ILHVLCKNRVE+PSGDGDSTR*LGQEGI**K*KVCSL*    SHR*E A*+KGW *+SSN+S*DG *Y LF*G  AQT+YG*R+AE Q WRD*W N WC++Q
Subject   7979  CHG*RCNRRADSCIW*IWHS*RRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRSSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**K*KVCSL*FFLGSHR*ECA*AKGWN*KSSNES*DGC*YRLF*GSSAQTSYG*RQAEFQPWRD*WWNGWCTHQ  8500

Range 6: 7241 to 7525 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
220.5 bits(475) 0.0 87/95(92%) 0/95(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSG  285
                PANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSG+FGQSENFVPL++VI L A I+VLSVWNSG
Subject   7241  PANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG  7525

Range 7: 7571 to 7957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 64/129(50%) 0/129(0%) Plus/Plus
Query      331  QQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEAR  717
                QQ*W    L ++ +  +N++*+L PK* +C +  G   RFEGFRG*P  *RN*LSLL  L G+   + +R*+K* F*   +I G   SSKAA RF* T+ S WHSC  +E + +C+FK+ GH GG E R
Subject   7571  QQ*WHSPRLLYQSHWRINLD*KLRPK*SSCIHCKGGVGRFEGFRG*P*G*RN*LSLLNWLNGKSNWETSR*IK*GF*SPAKIAGVS*SSKAAGRF*YTTYSQWHSCQTQESYRECTFKDGGHEGGFETR  7957

Range 8: 7242 to 8501 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
539.9 bits(1172) 0.0 248/420(59%) 0/420(0%) Minus/Minus
Query        2  IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ  1261
                +D+ TS S TNLSK+G PL+FSHSLSEHL+LKRG+IS+HLSF WSS N+TL  KR LICDS+E++KGCKLFIFIKSLLGPISGWNPRLQMD+PHDFCIVHAKS    H PY  S F  + VT+ TL+ QG* L ATNIRA+ C IY ++KL A  YAR T+C+NQL+YCTFIH+I   H+R V Q+LPHVH  *K I  + L F KNAT++R  +RTFRLLLSS  LQRF  G KS I* T +      H   LTMIINFF  MANP*SLQTS H L    K  TWA I N  *      + T++    AV M KD   N ++Y++QNSKQI+H+     L Q L+AQNSQT Q   + G T W H+ L F CRPCNA   EID CC L+MA+LT  GNAA  QC SQ  MG    PN Q
Subject   7242  VDECTSRSTTNLSKVGTPLAFSHSLSEHLNLKRGDISNHLSFRWSSFNSTLWLKRTLICDSQEKIKGCKLFIFIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNSLAFGKNATESRWCIRTFRLLLSSS*LQRF*PGFKSLI*FTGKSPNLTCHSANLTMIINFFNLMANP*SLQTSQHLLYSGCKSFTWAAIFNQD*FASGSDKATLVSATTAVYMSKDLDGNYNSYQDQNSKQIIHV*MQSDL*QALRAQNSQTGQIFPNWGRTAWGHSKLYFLCRPCNAPREEIDECCLLNMADLTSSGNAAQVQCLSQQLMGLWSLPN*Q  8501

Range 9: 8008 to 8490 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 105/161(65%) 0/161(0%) Minus/Minus
Query      768  HQQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRMLES  1250
                HQ F H*SLQ W+SA LQP* V*A  PQKR+Y*+PSQL LEL * HPL QA SHL*L  ++QRLQTFHFH*IPSWPN*RVESPSPDG STRFLHSTCKI    S PL  Q      GH+ DS  S L   SYQHQS+ V YL      R  +CQ H+M ES
Subject   8008  HQPFHH*SLQGWNSACLQP*LV*ALEPQKRRY*QPSQLSLELF*FHPLAQAHSHL*LPRKNQRLQTFHFH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLLLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARLQLCQIHQMHES  8490

Range 10: 7243 to 7581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.4 bits(383) 0.0 82/113(73%) 0/113(0%) Minus/Minus
Query        3  HYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFA  341
                HYCC H QG G QLQ L  PEFQTD+T + A+  +T IKGTKFSD P  PELG DCLGPQ V+L VPSL*RPP GN* MLSPEYG+FDFLRKCST PMPKP VNGV+V AQ A
Subject   7243  HYCCLHEQGFGWQLQFLPRPEFQTDNTCINAIRPMTSIKGTKFSDWPNIPELGKDCLGPQ*VILFVPSL*RPP*GN**MLSPEYGRFDFLRKCSTSPMPKPTVNGVMVFAQLA  7581

Range 11: 7705 to 7956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 44/84(52%) 0/84(0%) Minus/Minus
Query      465  RASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG*  716
                R S PP+CP  LK H  * S   QECH E  V *NL AAFEL   P I    QK HL H        P++ FNNDNQFL  YG*
Subject   7705  RVSKPPSCPPSLKVHSL*LSCVWQECH*E*VVY*NLPAAFEL*LTPAILAGLQKPHLIHREVSQFDLPFSQFNNDNQFLQPYG*  7956

Range 12: 7909 to 8457 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.5 bits(525) 0.0 120/183(66%) 0/183(0%) Plus/Plus
Query      669  KMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAP  1217
                +M FQ+ WT GR *+T    +  M WMKVQ* S*F H V+LA  +A +L   *I H  ALMLVA + QP*  RV  VT*   K L  *G+*    DFACTMQKSCG SIWRRGFHPLIGPRRDLMKMKSLQPL  S ESQMR RL QRV L+ELQ KLRW LI PLLR +CSDKLWLK SG P
Subject   7909  RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMKMKSLQPLIFSWESQMRVRLSQRVELKELQRKLRWLLISPLLRFKCSDKLWLKASGVP  8457

Range 13: 7243 to 7851 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 106/203(52%) 0/203(0%) Plus/Plus
Query        3  CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*GLAXXXXXXXXXXXXXXWRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLK  611
                C LG++++PI+ WL HW  AAFP++VK AI R QH+SIS+  ALQGRH+K+N+LW Q V+P+    W V*EFCA N C+  + ++ C ICLEFW  * L L   SL M TA++    V       +Q *L+I AQV+ L    R+C EV*RL*GLAI +KKLIIIVK+  W+       V+QM+LL+P *N WS  ELKSS K
Subject   7243  C*LGKDHNPINCWLRHWTCAAFPEEVKSAIFRRQHSSISSRGALQGRHKKYNLLWPQAVLPQFGNIWPV*EFCALNACHRSDCIYTCIICLEFWSW*EL*LPSKSLLM*TAVVALTKVALSEPLANQS*LKIAAQVKLLHPL*RRCWEV*RL*GLAIRLKKLIIIVKLAEWQVKLGDFPVNQMRLLKPG*NRWS*LELKSSRK  7851

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 12

Range 1: 7515 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
704.4 bits(1531) 0.0 302/335(90%) 0/335(0%) Plus/Plus
Query      257  YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*NCYMASPPGRLPGESNEAFEARLKSLELARAQKQPEGSNQPPVLGGILAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGISEGDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEAKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  1261
                +M+YLFG+LVL+G AIA  ILAHVD+++GDN GCLIRATGESILIENCGPSEALASTVKE+LGGLKALGVSH+ EE D+ C*   MAS  G+LPGESNEAFEARLKSLELARAQKQPEGSNQPP L GILAKRKRVIENALSKTVDMR+VLKHE+VVLSPNVMDEGAIDELIRAFGESGI+E  QF+VAIDIARHCSDVGSSQRSTLIGKSPFC+LNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALE KGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN
Subject   7515  FMHYLFGVLVLLGIAIAIQILAHVDNSSGDNQGCLIRATGESILIENCGPSEALASTVKEILGGLKALGVSHLIEETDHSC*TGVMASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNQPPTLSGILAKRKRVIENALSKTVDMRDVLKHETVVLSPNVMDEGAIDELIRAFGESGIAESAQFDVAIDIARHCSDVGSSQRSTLIGKSPFCELNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGVKRAPTKAEMVANIASFEVKVLRQTMAEGKRSSNLGEISGGTAGALIN  8519

Range 2: 7266 to 7457 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 36/64(56%) 0/64(0%) Plus/Plus
Query        8  IGPKLSPH*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVTGTAPKA*HIVVPNSHSQALGF  199
                IGPKL PH +L W L  C I *E QICH   T YINF  E VTGT  +A* IVV +    A GF
Subject   7266  IGPKL*PHSQLVWVLV*CFIF*EGQICHILETIYINFLTEDVTGTVQRA*LIVVLSKPFLAPGF  7457

Range 3: 7532 to 8518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
606.8 bits(1318) 0.0 276/329(84%) 0/329(0%) Minus/Minus
Query      274  LIRAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFASSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SPSDMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSMTLFLLARMPPRTGGWLEPSGCF*ALASSKDFSLASKASFDSPGNLPGGLAI*QF*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  1260
                LI APAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPF SSALSSVTPRKKSKAANFSFSLNPF AQLAGGIPVSRW+FHTIFA*YMQNLRRVVTSLIIPAISDLF SQKGL PI+VDL ELPTSEQ RAISIAT N + S MPDSPNARINSSIAPSS+T G+STT SCF+TS +STVFE AFS+TLFLLARMP R GGWLEPSGCF*ALA+SKD SLASKASFDSPGN P  LAI    Q *S+SS  WLTPKAF+PP+ SLTVEA ASLGPQFS++IDSPVAL++QP LSPLLLSTCARI +AIA P  TR P
Subject   7532  LISAPAVPPLISPRLELRFPSAIVCLSTLTSKEAILATISALVGALLTPPFGSSALSSVTPRKKSKAANFSFSLNPFFAQLAGGIPVSRWMFHTIFA*YMQNLRRVVTSLIIPAISDLFNSQKGLLPIRVDLWELPTSEQ*RAISIATSNCALSAMPDSPNARINSSIAPSSMTFGESTTVSCFSTSLISTVFESAFSITLFLLARMPLRVGGWLEPSGCF*ALANSKDLSLASKASFDSPGNFPI*LAITPVQQE*SVSSIRWLTPKAFRPPNISLTVEARASLGPQFSMSIDSPVALIKQPWLSPLLLSTCARIWMAIAIPNSTRTP  8518

Range 4: 7259 to 7480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 40/74(54%) 0/74(0%) Minus/Minus
Query        1  HKILRLTKKPRAWE*LFGTTICYAFGAVPVTPSMWKLMYVVP*VWQI*LS*EMQHQANAQANRQWGDSFGPIRR  222
                +KI RL++ P A + L  TTI YA   VPVT S+ KLMY+V  +WQI* S +M+H  N Q N +WG SFGPI R
Subject   7259  YKIFRLSENPGARKGLLRTTISYALCTVPVTSSVRKLMYIVSRIWQI*PSQKMKH*TNTQTNCEWGYSFGPIYR  7480

Range 5: 7259 to 8518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
539.0 bits(1170) 0.0 269/420(64%) 0/420(0%) Plus/Plus
Query        1  PANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSGSXXXXXXXXXXXXXXQQ*W*QSWLSHKGYRGVNIN*ELWPK*GACFNS*GSARRFEGFRG*PYW*RNXXXXXXXXYGEPTRKVAR*VK*SF*GQTEIFGAGKSSKAA*RF*PTSCSWWHSC*KEEGH*KCSFKNCGHAGGVEARVCCAIS*CYG*RCNR*VDSSIR*VWHIRGRSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDSTR*LGQEGI**K*KVCSL*LLPWSHR*ERA*SKGWR*ESSNQS*DGR*YCLF*GQGAQTNYG*RKAELQSWRD*WRNCWCSYQ  1260
                P NWAKTITPLTIGLGIGLV HFLR+SNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQ+FPSSG+FGQSENFVPL++VI L A I+ LSVW+SG+ R CNC+PNPCTCRQQ*W*Q  L ++ Y  +  +*+LW K*  C  S  +    +GFRG P   RN*  LL   YG+   KV R +K*SF*  T+IFG G  SKAA RF P S    HS  KEEG+*KC+ KN  +    EA   C +  C+G   N *+D  I  +WH    ++* C+RYC  LL CW   K+N DW +  L* E*V*N WNNKGS   A ILHVL KN VE+PSGDGD+T  LG+E +**K*KVCSL*LLPWSHR*E A*+KG R*ESSNQS*DGR*YCLF* Q  Q NYG*RKAE Q WR+*W N W +YQ
Subject   7259  PVNWAKTITPLTIGLGIGLVFHFLRRSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQAFPSSGIFGQSENFVPLMLVITLIAFIHALSVWSSGTVRNCNCHPNPCTCRQQ*W*QPGLLNQSYWRIYTH*KLWAK*SPCLYSQRNIGWSKGFRGEPSNRRN*SFLLNWSYGKSNWKVTRGIK*SF*S*TQIFGIG*GSKAARRFQPASNP*RHSRQKEEGN*KCTLKNS*YERRAEA*DSCTLPECHGRGGN**IDPRIWRIWHS*ECAI*CCNRYCPSLLRCWKFPKVNPDW*KPFL*VE*V*NSWNNKGSHNSA*ILHVLRKNCVEHPSGDGDTTSQLGKERV**K*KVCSL*LLPWSHR*ECA*AKGRR*ESSNQS*DGR*YCLF*SQSTQANYG*RKAEFQPWRN*WWNGWSTYQ  8518

Range 6: 7518 to 8519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
433.6 bits(940) 0.0 193/334(58%) 0/334(0%) Minus/Minus
Query      260  IDKSTSSSATNLSKIGAPLSFSHSLSEHLDLKRGNISDHLSFGWSSLNATLCFKRALICDSKEEVKGCKLFIFIKSLLGPISGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLIYCTFIHNIRR*HNRLVLQHLPHVHSF*KSIFNDPLPFSKNATKNRRLVRTFRLLLSSCQLQRFQSGLKSFI*LTWQPSWWARHITILTMIINFFTNMANP*SLQTS*HFLNC*SKRLTWATILN*Y*LPCSPYETTMIVTIIAVDMCKD*GCNCSAYKNQNSKQIVH  1261
                +DK +S S TN SK+G PLSFSHSL E+ D KRGNISDHLSFGWSSLNA L  KR LICDSKEEVKGCKLFIFIK  L P+  W PRLQMD+PH+FC+VHAKS Q   FPYYSS FRPIQ+T+   +NQG* L  +NI AM  NIY N+KL  L YAR ++C++Q I C  +H+IR  +N L+LQH+ H++ F*+ IFN PLPF +NA K  RLV TF LLLS  Q QRF+S  KSFI*     S    H +  T +I+FF  MA+P*SL T+ +F +C  K  TW TI N Y    S    T++VT   V MCKD   NC++ + QNSKQI+H
Subject   7518  VDKCSSRSTTNFSKVGTPLSFSHSLPEYFDFKRGNISDHLSFGWSSLNAALWLKRTLICDSKEEVKGCKLFIFIKPFLCPVGWWYPRLQMDVPHNFCVVHAKSTQSCDFPYYSSYFRPIQLTKRAFTNQG*PLGTSNI*AMTGNIYCNIKLRTLSYARFSKCADQFINCPLVHDIRGEYNCLMLQHVSHINCF*ECIFNYPLPFGENAAKGWRLVGTFWLLLSPSQFQRFESSFKSFI*FPG*LSNLTCHNSSSTRMISFFD*MAHP*SL*TTQYFFDCRGKGFTWPTIFNEYRFSSSSD*ATLVVTTTVVYMCKDLDGNCNS*QYQNSKQIMH  8519

Range 7: 7260 to 7493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 40/78(51%) 0/78(0%) Minus/Minus
Query        2  QLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPCNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSMG**FWPNSQ  235
                Q LK QN  T +K++S      DHN LC   RPCN L  EIDV C  +MANLTF  N    Q P Q  +G *FWPN Q
Subject   7260  QALKVQNFPTVRKSRS*ERLA*DHNKLCSLYRPCNVLREEIDVYCLQNMANLTFSENETLDQYPDQL*VGL*FWPNLQ  7493

Range 8: 8035 to 8505 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.3 bits(470) 0.0 104/157(66%) 0/157(0%) Minus/Minus
Query      777  QQFRH*SLQDWSSAFLQP*FV*AP*PQKRQY*RPSQLWLELS*RHPLLQARSHL*LQGRSQRLQTFHFH*IPSWPN*RVESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRPLICQTHRM  1247
                Q F H* LQ W+SAFLQP*F *  * QKRQY*RPSQLWLELS*R PL QA SHL*LQGRSQRLQTFHFH*  S P+  V SPSPDG ST+FL STCKI A   LPLLFQ FQTYS H++  +QS L F ++QH SN  QYL Q       +CQ  +M
Subject   8035  QPFHH*FLQGWNSAFLQP*FA*VL*LQKRQY*RPSQLWLELS*RRPLAQAHSHL*LQGRSQRLQTFHFH*TLSLPSWLVVSPSPDGCSTQFLRSTCKIYAEL*LPLLFQLFQTYSTHKKGFYQSGLTFGNFQHLSNDGQYLLQHQIAHSQLCQILQM  8505

Range 9: 7264 to 7614 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.4 bits(394) 0.0 84/117(72%) 0/117(0%) Minus/Minus
Query        6  NHDCHHYCCRHVXXXXXXXXXXQEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQF  356
                N  CHHYCC HVQG G QLQ L  PE QTD+  M A+  +T IKGTKFSD PK PELG  CLGPQ VML VPSL*RPP GN*C+LSPEYGKFD LRK +T+P+P+PIV+GVIVLAQF
Subject   7264  NPGCHHYCCLHVQGFGWQLQFLTVPELQTDNA*MNAIRVMTSIKGTKFSDCPKIPELGKACLGPQ*VMLFVPSL*RPP*GN*CILSPEYGKFDLLRK*NTRPIPRPIVSGVIVLAQF  7614

Range 10: 7726 to 7983 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 41/86(48%) 0/86(0%) Minus/Minus
Query      468  QQTRASTPPACPQFLKEHFQ*PSSF*QECHQEQEVG*NLQAAFELLPAPKISVWPQKLHLTHLATFLVGSPYNNFNNDNQFLHQYG  725
                Q + AS   +   FL+ HFQ PSSF +EC    E G NL AAFE  P PKI V  QKLHL    TF    P   FN ++QFL   G
Subject   7726  QLSHASARLSYQLFLRVHFQLPSSFWRECR*GLEAGWNLLAAFEP*PIPKI*V*LQKLHLIPRVTFQFDLP*LQFNKNDQFLRLDG  7983

Range 11: 7771 to 8475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
264.5 bits(571) 0.0 142/235(60%) 0/235(0%) Plus/Plus
Query      513  WRAHQEGCQVSQMKLLRPD*NLWSWQELKSSLKXXXXXXXXXXXXXKGRGSLKMLFQKLWTCGRC*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPLIGPRRDLMKMKSLQPLTSSLESQMRARLKQRVALRELQPKLRWSLILPLLRSRCSDKLWLKESGAP  1217
                W+   E    +QMKLL+ D NLW+W  LKSS KV T+L  L AF  KGRG LKM  QK      C*S   L    M W + Q M+*  H  +LA  R  +L L+*IL  IA ML   K QP*L +   V+*IGLK LE**GK   C DFACT QK CG SIWRRG+H   G R+ LMKMKSLQPLTSSLESQMR RL QR ALRELQPKLRWSLILPLL+S+ S KLWLKESG P
Subject   7771  WQVKLESYPGNQMKLLKLDSNLWNWLGLKSSQKVPTSLQPLAAFSPKGRG*LKMHSQKQLI*ETC*SMRQLYSPRMSWTRGQLMN*SAHLENLA*LRVRNLMLQ*ILPVIAQMLEVPKGQP*LVKALFVS*IGLK*LE**GKSQLCVDFACTTQKLCGTSIWRRGYHQPTGQRKGLMKMKSLQPLTSSLESQMRVRLSQRAALRELQPKLRWSLILPLLKSKYSGKLWLKESGVP  8475

Range 12: 7261 to 7722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.0 bits(356) 0.0 77/154(50%) 0/154(0%) Plus/Plus
Query        3  CELGQNYHPIDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRALQGRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVTIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKC*EV*RL*G  464
                C+LGQNY+P  +W G+W   +F +KVKFAI   Q+TSIS+ R LQGR+++HN+LWS   +  L  F +V +FC FN C+  N +H C ICLEFW+ * LQL   SLHM T ++VT  V    L  + Y L+IV QV+ L  Q +K   V*RL*G
Subject   7261  CKLGQNYNPTHNWSGYWSSVSFSEKVKFAIFWRQYTSISSRRTLQGRYKEHNLLWS*ASLS*LRDFRTVGKFCTFNACHHSNRIHSCIICLEFWYC*ELQLPSKSLHM*TTVVVTTRVA*SELLENLYSLKIVGQVKPLPLQSKKYWVV*RL*G  7722

Nucleotide Sequence (151 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
16
32
48
64
80
96
112
128
144
151

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 7

Range 1: 827 to 976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 49/50(98%) 0/50(0%) Minus/Plus
Query        1  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  150
                IIMNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIRELVTEDESF
Subject    827  IIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  976

Range 2: 827 to 976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 43/50(86%) 0/50(0%) Plus/Minus
Query        1  KTLVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHNN  150
                +TLVLSDKFSY*T FTT+RN +N+NWKSEHAIN+HKLKRRQSFN*VIHNN
Subject    827  ETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNN  976

Range 3: 882 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 26/31(84%) 0/31(0%) Plus/Minus
Query        3  NSRPQ*QVLLLNYFYHFQEHYERQLEI*ARY  95
                NSRPQ*QVLLLN FYH+QE  E+QLEI*ARY
Subject    882  NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARY  974

Range 4: 826 to 861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/12(100%) 0/12(0%) Plus/Minus
Query      116  VDKALTKLFIII  151
                VDKALTKLFIII
Subject    826  VDKALTKLFIII  861

Range 5: 826 to 897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 23/24(96%) 0/24(0%) Minus/Plus
Query       80  DYYE*LS*SFVYV*VCGSL*RAQI  151
                DYYE*LS*SFVYV*VCG L*RAQI
Subject    826  DYYE*LS*SFVYV*VCGYL*RAQI  897

Range 6: 940 to 975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/12(100%) 0/12(0%) Minus/Plus
Query        2  FNKRTCH*GREF  37
                FNKRTCH*GREF
Subject    940  FNKRTCH*GREF  975

Range 7: 867 to 974 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 30/36(83%) 0/36(0%) Minus/Plus
Query        3  SLWEFIACSDFQLSFIVFLEXXXXXX*ENLSLRTRV  110
                SLW FIACSDFQL F  FL VVK V**ENLSLRTRV
Subject    867  SLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRV  974

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 5

Range 1: 6571 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.2 bits(243) 0.0 49/50(98%) 0/50(0%) Minus/Plus
Query        1  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  150
                IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDESF
Subject   6571  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF  6720

Range 2: 6571 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 40/50(80%) 0/50(0%) Plus/Minus
Query        1  KTLVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHNN  150
                +TLV S++ SY TTFTT+RN MN+NWKSEHAIN+HKLKRRQSFN*VIHNN
Subject   6571  ETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  6720

Range 3: 6626 to 6718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 24/31(77%) 0/31(0%) Plus/Minus
Query        3  NSRPQ*QVLLLNYFYHFQEHYERQLEI*ARY  95
                NSR Q*  LL NYFYH+QE YE+QLEI*ARY
Subject   6626  NSRLQ**ALLSNYFYHYQERYEQQLEI*ARY  6718

Range 4: 6570 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/12(100%) 0/12(0%) Plus/Minus
Query      116  VDKALTKLFIII  151
                VDKALTKLFIII
Subject   6570  VDKALTKLFIII  6605

Range 5: 6570 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 23/24(96%) 0/24(0%) Minus/Plus
Query       80  DYYE*LS*SFVYV*VCGSL*RAQI  151
                DYYE*LS*SFVYV*VCG L*RAQI
Subject   6570  DYYE*LS*SFVYV*VCGCL*RAQI  6641

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7

Range 1: 6571 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 49/50(98%) 0/50(0%) Minus/Plus
Query        1  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  150
                IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDE+F
Subject   6571  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENF  6720

Range 2: 6571 to 6714 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 44/48(92%) 0/48(0%) Plus/Minus
Query        7  LVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHNN  150
                LVLSDKFSY*TTFTT+RN MN+NWKSEHAIN+HKLKRRQSFN*VIHNN
Subject   6571  LVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  6714

Range 3: 6626 to 6718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.9 bits(144) 0.0 28/31(90%) 0/31(0%) Plus/Minus
Query        3  NSRPQ*QVLLLNYFYHFQEHYERQLEI*ARY  95
                NSRPQ*QVLLLNYFYH+QE YE+QLEI*ARY
Subject   6626  NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY  6718

Range 4: 6570 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/12(100%) 0/12(0%) Plus/Minus
Query      116  VDKALTKLFIII  151
                VDKALTKLFIII
Subject   6570  VDKALTKLFIII  6605

Range 5: 6570 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 23/24(96%) 0/24(0%) Minus/Plus
Query       80  DYYE*LS*SFVYV*VCGSL*RAQI  151
                DYYE*LS*SFVYV*VCG L*RAQI
Subject   6570  DYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 6: 6681 to 6719 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/13(100%) 0/13(0%) Minus/Plus
Query        2  *FNKRTCH*GREF  40
                *FNKRTCH*GREF
Subject   6681  *FNKRTCH*GREF  6719

Range 7: 6611 to 6718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 31/36(86%) 0/36(0%) Minus/Plus
Query        3  SLWEFIACSDFQLSFIVFLEXXXXXX*ENLSLRTRV  110
                SLW FIACSDFQL FI FL VVKVV**ENLSLRTR+
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRI  6718

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 2

Range 1: 6574 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 43/49(88%) 0/49(0%) Minus/Plus
Query        1  IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  147
                IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF
Subject   6574  IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF  6720

Range 2: 6574 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 26/49(53%) 0/49(0%) Plus/Minus
Query        1  KTLVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHN  147
                +TLVL D   Y*TT TT+R TM ++WK +H  N++KL+  Q FN +IHN
Subject   6574  ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKLEG*QCFNQIIHN  6720

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 2

Range 1: 6574 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 43/49(88%) 0/49(0%) Minus/Plus
Query        1  IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  147
                IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF
Subject   6574  IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF  6720

Range 2: 6574 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 25/49(51%) 0/49(0%) Plus/Minus
Query        1  KTLVLSDKFSY*TTFTTSRNTMNDNWKSEHAINSHKLKRRQSFN*VIHN  147
                +TLVL D   Y*TT TT+R TM ++WK +H  N++K +  Q FN +IHN
Subject   6574  ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKFEG*QCFNQIIHN  6720

Nucleotide Sequence (199 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8

Range 1: 1265 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.2 bits(339) 0.0 64/66(97%) 0/66(0%) Minus/Plus
Query        1  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  198
                ITGSPFELDVEGVLICFGKEAVDLAAAHNSDF LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA
Subject   1265  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA  1462

Range 2: 1265 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 61/66(92%) 0/66(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  198
                CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK EIGIMR  *INCLLAKAN HTLNIQLKWR CN
Subject   1265  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKANQHTLNIQLKWRACN  1462

Range 3: 1264 to 1461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(309) 0.0 64/66(97%) 0/66(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  199
                AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG LKSELCAAAKSTASLPKQISTPSTSNSNGEPVI
Subject   1264  AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  1461

Range 4: 1266 to 1460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.8 bits(301) 0.0 59/65(91%) 0/65(0%) Plus/Minus
Query        3  QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  197
                QQCRTSAYHR SDPLISIR*QHQM*HLVPHKE *NRNYA+ LNQLPPCQSK AHPQHPTQMA+L*
Subject   1266  QQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHPTQMASL*  1460

Range 5: 1359 to 1460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/34(97%) 0/34(0%) Minus/Plus
Query        3  SIFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL  104
                S FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL
Subject   1359  SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL  1460

Range 6: 1264 to 1317 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 16/18(89%) 0/18(0%) Minus/Plus
Query      146  DYRFAI*VGC*GCANLLW  199
                DYR AI*VGC*GCA+LLW
Subject   1264  DYRLAI*VGC*GCADLLW  1317

Range 7: 1369 to 1461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 30/31(97%) 0/31(0%) Minus/Plus
Query        2  L*GTRCYI*CCYLIEIKGSDPR**ALVLHCC  94
                L*GTRCYI*CCYLIEIKGSD R**ALVLHCC
Subject   1369  L*GTRCYI*CCYLIEIKGSDLR**ALVLHCC  1461

Range 8: 1266 to 1310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 14/15(93%) 0/15(0%) Minus/Plus
Query      153  LQVRHLSWMLRVC*F  197
                LQ RHLSWMLRVC*F
Subject   1266  LQARHLSWMLRVC*F  1310

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8

Range 1: 7009 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.2 bits(339) 0.0 64/66(97%) 0/66(0%) Minus/Plus
Query        1  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  198
                ITGSPFELDVEGVLICFGKEAVDLAAAHNSDF LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA
Subject   7009  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAA  7206

Range 2: 7008 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.1 bits(309) 0.0 64/66(97%) 0/66(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  199
                AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG LKSELCAAAKSTASLPKQISTPSTSNSNGEPVI
Subject   7008  AAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  7205

Range 3: 7009 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 61/66(92%) 0/66(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  198
                CSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRK EI IMR  *INCLLAKAN*HTLNIQLKWRTCN
Subject   7009  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQLKWRTCN  7206

Range 4: 7010 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 59/65(91%) 0/65(0%) Plus/Minus
Query        3  QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  197
                QQCRTSAYHR SDPLISIR*QHQM*HL PHKE *N+NYA+ LNQLPPCQSKLAHPQHPTQMANL*
Subject   7010  QQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHPTQMANL*  7204

Range 5: 7103 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 32/34(94%) 0/34(0%) Minus/Plus
Query        3  SIFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL  104
                S FLVR EVLHLMLLPY*NQGIRPPMISTGSTLL
Subject   7103  SNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLL  7204

Range 6: 7008 to 7061 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 18/18(100%) 0/18(0%) Minus/Plus
Query      146  DYRFAI*VGC*GCANLLW  199
                DYRFAI*VGC*GCANLLW
Subject   7008  DYRFAI*VGC*GCANLLW  7061

Range 7: 7113 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 29/31(94%) 0/31(0%) Minus/Plus
Query        2  L*GTRCYI*CCYLIEIKGSDPR**ALVLHCC  94
                L*G RCYI*CCYLIEIKGSD R**ALVLHCC
Subject   7113  L*GARCYI*CCYLIEIKGSDLR**ALVLHCC  7205

Range 8: 7010 to 7054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 15/15(100%) 0/15(0%) Minus/Plus
Query      153  LQVRHLSWMLRVC*F  197
                LQVRHLSWMLRVC*F
Subject   7010  LQVRHLSWMLRVC*F  7054

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8

Range 1: 7009 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 62/66(94%) 0/66(0%) Minus/Plus
Query        1  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  198
                ITGSPFELDVEGVLICFGKEAV+LAAAHNSDF LPCEVRG TFDVVTLLKSRDPT DDKHWFYIAA
Subject   7009  ITGSPFELDVEGVLICFGKEAVNLAAAHNSDFKLPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAA  7206

Range 2: 7008 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.6 bits(299) 0.0 62/66(94%) 0/66(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  199
                AAM*NQCLSS VGSLDFNKVTTSNV PRTSQG LKSELCAAAK TASLPKQISTPSTSNSNGEPVI
Subject   7008  AAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQGSLKSELCAAAKLTASLPKQISTPSTSNSNGEPVI  7205

Range 3: 7009 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 58/66(88%) 0/66(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  198
                CSNVEPVLII GRI *FQ*GNNIKCSTSYLTRK EI IMR C +NCLLAKAN*HTLNIQLKW TCN
Subject   7009  CSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRKFEI*IMRSCQVNCLLAKAN*HTLNIQLKW*TCN  7206

Range 4: 7010 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 54/65(83%) 0/65(0%) Plus/Minus
Query        3  QQCRTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  197
                QQCRTSAYH+ SD LISIR*QHQM*+LVPHKE *N NYA+L + LPPCQSKLAHPQHPTQM NL*
Subject   7010  QQCRTSAYHQRSDLLISIR*QHQM*YLVPHKEV*NLNYAQLPS*LPPCQSKLAHPQHPTQMVNL*  7204

Range 5: 7103 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 31/34(91%) 0/34(0%) Minus/Plus
Query        3  SIFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLL  104
                S FLVRYEVLHLMLLPY*NQ IRP MISTGSTLL
Subject   7103  SNFLVRYEVLHLMLLPY*NQEIRPLMISTGSTLL  7204

Range 6: 7008 to 7061 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 17/18(94%) 0/18(0%) Minus/Plus
Query      146  DYRFAI*VGC*GCANLLW  199
                DYRF I*VGC*GCANLLW
Subject   7008  DYRFTI*VGC*GCANLLW  7061

Range 7: 7113 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 27/31(87%) 0/31(0%) Minus/Plus
Query        2  L*GTRCYI*CCYLIEIKGSDPR**ALVLHCC  94
                L*GTR YI*CCYLIEIK SD  **ALVLHCC
Subject   7113  L*GTRYYI*CCYLIEIKRSDL***ALVLHCC  7205

Range 8: 7010 to 7054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 14/15(93%) 0/15(0%) Minus/Plus
Query      153  LQVRHLSWMLRVC*F  197
                LQV HLSWMLRVC*F
Subject   7010  LQVHHLSWMLRVC*F  7054

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 4

Range 1: 1265 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.2 bits(328) 0.0 59/66(89%) 0/66(0%) Minus/Plus
Query        1  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  198
                + GSPFELDVEGVLICFGKEAVDLA AHNSDF LPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA
Subject   1265  VIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA  1462

Range 2: 1267 to 1461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.4 bits(270) 0.0 53/65(82%) 0/65(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPV  196
                AA *NQCLSSGVGSLDFN VTTSNV PRTSQG LKSELCA A+STAS PKQ+ TPSTS+SNG+P+
Subject   1267  AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPI  1461

Range 3: 1265 to 1462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/66(50%) 0/66(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  198
                C +VEP+LI    +P  Q*  N+KC T +L  ++E+GI+R C*+  LL+KAN  +LNIQ KWR  N
Subject   1265  CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*VYGLLSKANEDSLNIQFKWRPYN  1462

Range 4: 1266 to 1451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 31/62(50%) 0/62(0%) Plus/Minus
Query       12  RTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  197
                RT+AY     P  SI  Q QM +  P +  *+RN A+LL   PP QSK   PQHP QMA L*
Subject   1266  RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLGLRPPFQSK*GLPQHPVQMATL*  1451

Grapevine rupestris stem pitting associated virus isolate SK30, complete genome

Sequence ID: KX274277.1 Length: 8724 Number of Matches: 4

Range 1: 7009 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.2 bits(328) 0.0 59/66(89%) 0/66(0%) Minus/Plus
Query        1  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFNLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAA  198
                + GSPFELDVEGVLICFGKEAVDLA AHNSDF LPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AA
Subject   7009  VIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAA  7206

Range 2: 7011 to 7205 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.4 bits(270) 0.0 53/65(82%) 0/65(0%) Plus/Minus
Query        2  AAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGRLKSELCAAAKSTASLPKQISTPSTSNSNGEPV  196
                AA *NQCLSSGVGSLDFN VTTSNV PRTSQG LKSELCA A+STAS PKQ+ TPSTS+SNG+P+
Subject   7011  AAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPI  7205

Range 3: 7009 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 34/66(52%) 0/66(0%) Plus/Minus
Query        1  CSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKIEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  198
                C +VEP+LI    +P  Q*  N+KC T +L  ++E+GI+R C*I  LL+KAN ++LNIQ KWR  N
Subject   7009  CCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQFKWRPYN  7206

Range 4: 7010 to 7195 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 31/62(50%) 0/62(0%) Plus/Minus
Query       12  RTSAYHRGSDPLISIR*QHQM*HLVPHKED*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  197
                RT+AY     P  SI  Q QM +  P +  *+RN A+LL+  PP QSK   PQHP QMA L*
Subject   7010  RTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQMATL*  7195

Nucleotide Sequence (120 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
120

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 1364 to 1483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 39/40(98%) 0/40(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  120
                LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL
Subject   1364  LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL  1483

Range 2: 1364 to 1483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 40/40(100%) 0/40(0%) Minus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  120
                QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK
Subject   1364  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  1483

Range 3: 1365 to 1481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 39/39(100%) 0/39(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  118
                FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN
Subject   1365  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  1481

Range 4: 1365 to 1481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 38/39(97%) 0/39(0%) Minus/Minus
Query        2  ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE  118
                ISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HLVPHKE
Subject   1365  ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKE  1481

Range 5: 1366 to 1482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 38/39(97%) 0/39(0%) Minus/Minus
Query        3  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  119
                NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG
Subject   1366  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQG  1482

Range 6: 1366 to 1482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 38/39(97%) 0/39(0%) Plus/Plus
Query        3  SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI  119
                SL*GTRCYI*CCYLIEIKGSD R**ALVLHCCNKT*KEI
Subject   1366  SL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEI  1482

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 39/40(98%) 0/40(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  120
                LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL
Subject   7108  LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL  7227

Range 2: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 39/40(98%) 0/40(0%) Minus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  120
                QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRK
Subject   7108  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRK  7227

Range 3: 7110 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 38/39(97%) 0/39(0%) Minus/Minus
Query        3  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  119
                NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG
Subject   7110  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQG  7226

Range 4: 7109 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 37/39(95%) 0/39(0%) Minus/Minus
Query        2  ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE  118
                ISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HL PHKE
Subject   7109  ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKE  7225

Range 5: 7109 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 38/39(97%) 0/39(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  118
                FLVR EVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN
Subject   7109  FLVRCEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  7225

Range 6: 7110 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        3  SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI  119
                SL*G RCYI*CCYLIEIKGSD R**ALVLHCCNKT*KEI
Subject   7110  SL*GARCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEI  7226

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 38/40(95%) 0/40(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  120
                LPCEVRG TFDVVTLLKSRDPT DDKHWFYIAATRHRKKL
Subject   7108  LPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL  7227

Range 2: 7110 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/39(95%) 0/39(0%) Minus/Minus
Query        3  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  119
                NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV PRTSQG
Subject   7110  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQG  7226

Range 3: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 36/40(90%) 0/40(0%) Minus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  120
                Q L MSCCSNVEPVLII GRI *FQ*GNNIKCSTSYLTRK
Subject   7108  QLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRK  7227

Range 4: 7109 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 35/39(90%) 0/39(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  118
                FLVRYEVLHLMLLPY*NQ IRP MISTGSTLLQQDI R+
Subject   7109  FLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS  7225

Range 5: 7109 to 7222 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 33/38(87%) 0/38(0%) Minus/Minus
Query        2  SFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE  115
                S YVLLQQCRTSAYH+ SD LISIR*QHQM*+LVPHKE
Subject   7109  SSYVLLQQCRTSAYHQRSDLLISIR*QHQM*YLVPHKE  7222

Range 6: 7110 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 33/39(85%) 0/39(0%) Plus/Plus
Query        3  SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI  119
                SL*GTR YI*CCYLIEIK SD  **ALVLHCCNKT*+E+
Subject   7110  SL*GTRYYI*CCYLIEIKRSDL***ALVLHCCNKT*EEV  7226

Grapevine rupestris stem pitting associated virus complete genome, genomic RNA, isolate GRSPaV MG

Sequence ID: FR691076.1 Length: 8749 Number of Matches: 3

Range 1: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 37/40(92%) 0/40(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  120
                LPCEVRG+TF+VVTLLKSRDPTP+DKHWFYIAATRHRKKL
Subject   7108  LPCEVRGSTFNVVTLLKSRDPTPEDKHWFYIAATRHRKKL  7227

Range 2: 7110 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 33/39(85%) 0/39(0%) Minus/Minus
Query        3  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  119
                NFFLCLVAAM*NQCLSSGVGSLDF +VTT  V PRTS G
Subject   7110  NFFLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPRTSHG  7226

Range 3: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 22/40(55%) 0/40(0%) Minus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  120
                QFL MSC S+V+PVL++ G + *FQ G +I+  TS LTR+
Subject   7108  QFLPMSCGSDVKPVLVLWGWVS*FQKGYHIEG*TSNLTRQ  7227

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3

Range 1: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 37/40(92%) 0/40(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  120
                LPCEVRG+TF+VVTLLKSRDPTP+DKHWFYIAATRHRKKL
Subject   7108  LPCEVRGSTFNVVTLLKSRDPTPEDKHWFYIAATRHRKKL  7227

Range 2: 7110 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 33/39(85%) 0/39(0%) Minus/Minus
Query        3  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  119
                NFFLCLVAAM*NQCLSSGVGSLDF +VTT  V PRTS G
Subject   7110  NFFLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPRTSHG  7226

Range 3: 7108 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 23/40(57%) 0/40(0%) Minus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  120
                QFL MSC SNV+PVL+  G I *FQ G +I+  TS  TR+
Subject   7108  QFLPMSCGSNVKPVLVFWGWIS*FQKGYHIEG*TSNFTRQ  7227

Nucleotide Sequence (1029 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
103
206
309
412
515
618
721
824
927
1029

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9

Range 1: 3331 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
813.9 bits(1770) 0.0 340/342(99%) 0/342(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  1027
                DGLALKAGIRSFVESESPVD ALS PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG
Subject   3331  DGLALKAGIRSFVESESPVDPALSGPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  4356

Range 2: 3331 to 4254 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
698.9 bits(1519) 0.0 290/308(94%) 0/308(0%) Minus/Minus
Query        2  IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV  925
                IHF*VPFD*I *SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQ  LF+VRS*H+SKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQV+S*SFNFSQLIHLY LRPVTNLFDMPNVFIRYVKQSRYAPAWINN NF+IDITFGTDVESLKSF QIHHIQTPPLT*LFK+VIGAWPT +IEHVYLTPSKC*CNGC HAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCY++QSHMVPNAE*GNHFIFC+SIFTKLLPYGWARKS INW*FTFHERPYSCLQSQTV
Subject   3331  IHF*VPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPVTNLFDMPNVFIRYVKQSRYAPAWINNLNFSIDITFGTDVESLKSFRQIHHIQTPPLT*LFKNVIGAWPTQIIEHVYLTPSKC*CNGCNHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYNNQSHMVPNAE*GNHFIFCVSIFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTV  4254

Range 3: 4300 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 18/19(95%) 0/19(0%) Minus/Minus
Query      971  TSL*ACNFPKEDFKGNDIP  1027
                TSL*ACNFPKEDFKGN+IP
Subject   4300  TSL*ACNFPKEDFKGNNIP  4356

Range 4: 3330 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
703.5 bits(1529) 0.0 338/343(99%) 0/343(0%) Minus/Minus
Query        1  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  1029
                *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTF+L*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMSKASKASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGV++ISLTWCLTQNKAIISFSA*AFSPSCFRMVG ERA STGDSLSTNDLIPAFKAKPS
Subject   3330  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMSKASKASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVIIISLTWCLTQNKAIISFSA*AFSPSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPS  4358

Range 5: 3330 to 4238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
662.3 bits(1439) 0.0 283/303(93%) 0/303(0%) Plus/Plus
Query        1  RRFGFEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK  909
                RRFGFEGRNKVVRGK*ITS* SSF PNHTEATW*KCL RK*NDCLILR*APCETD++NTRI*GELEVWGK*VASMWNFVFEVKSFS LCPS*WLHD SHCISTWKA*GRRAQL +*AKHQSH *RAMS GGSEYDVFG SF*GFRHLCQM*CQWRN* Y*SRRAHICSV*HNE*TH*ACRKDW*RASK+KGG*AAKS*TISS PAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACW VNF*H TK +DSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSS+FNQK
Subject   3330  RRFGFEGRNKVVRGK*ITS*SSSFGPNHTEATW*KCLRRK*NDCLILR*APCETDYYNTRI*GELEVWGK*VASMWNFVFEVKSFSALCPS*WLHDYSHCISTWKA*GRRAQLFV*AKHQSHF*RAMSGGGSEYDVFGGSF*GFRHLCQM*CQWRN*GY*SRRAHICSV*HNE*TH*ACRKDW*RASKYKGG*AAKS*TISS*PAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQK  4238

Range 6: 4223 to 4357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 43/45(96%) 0/45(0%) Plus/Plus
Query      894  RIQSKGT*KWMKSVXXXXXXXXXXXXGMSLPLKSSLGKLQA*RLV  1028
                +IQSKGT*KWMKSVRW*RQANQRRRAGM LPLKSSLGKLQA*RLV
Subject   4223  QIQSKGT*KWMKSVRW*RQANQRRRAGMLLPLKSSLGKLQA*RLV  4357

Range 7: 3332 to 4318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
677.4 bits(1472) 0.0 310/329(94%) 0/329(0%) Minus/Minus
Query        3  QR*RHXXXXXXXXXXXXPYTLHPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSKPNR  989
                QR*+HPSPPSLICLPSPPYTLHPFLGPF*LN LEPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLS  FV*CQKLT QQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAG ELIV*LFAAHPPL FEARYQSFRHA*CVHSLCQTEQICARLD** QF H*HHIWHRCRKPQKL PNTSYSDPP DIALQ+CDWCLAY +N*ARLPHAFQVLMQWL SCSH*EGHK ENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFL KHFHQVASVWLG KEL+QLVIHFPRTTLFLPSKPNR
Subject   3332  QR*QHPSPPSLICLPSPPYTLHPFLGPF*LNLLEPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGQELIV*LFAAHPPLYFEARYQSFRHA*CVHSLCQTEQICARLD**PQFLH*HHIWHRCRKPQKLPPNTSYSDPPPDIALQKCDWCLAYTNN*ARLPHAFQVLMQWL*SCSH*EGHKAENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLRKHFHQVASVWLGPKELDQLVIHFPRTTLFLPSKPNR  4318

Range 8: 3332 to 4189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
564.7 bits(1226) 0.0 268/286(94%) 0/286(0%) Plus/Plus
Query        3  TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXXPYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN  860
                TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVKML QKMK*LPYSALGTM*D*  *HQNMR*AGSLGKMSGLYVEFCV*SQIIF+LVPLLMAA* QPLHQHLEGVR*TCSI  VGQAPIT LKSYV+GGV*I*CIW+KLLRLSTSVPNVMSM KL+LLIQAGAYLLCLT*RMNTLGMSKRLVTGLK *RWMSCEKLNDQL TCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLL CQLLT NK +*QLCLVHLGLERVSYTRAS*RDLKEN
Subject   3332  TVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVKMLTQKMK*LPYSALGTM*D*LL*HQNMR*AGSLGKMSGLYVEFCV*SQIIFSLVPLLMAA*LQPLHQHLEGVR*TCSIICVGQAPITFLKSYVRGGV*I*CIWRKLLRLSTSVPNVMSMEKLRLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN  4189

Range 9: 4281 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/26(96%) 0/26(0%) Plus/Plus
Query      952  QIKEGGLGCRYL*SLP*ESYRPKGWS  1029
                QIKEGGLGC YL*SLP*ESYRPKGWS
Subject   4281  QIKEGGLGCCYL*SLP*ESYRPKGWS  4358

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 10

Range 1: 3331 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
807.5 bits(1756) 0.0 337/342(99%) 0/342(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  1027
                DGLALKAGIRSFVESESPVD ALS+PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTS IKQRELTVVLGTFGAGKSFL+KSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG
Subject   3331  DGLALKAGIRSFVESESPVDPALSNPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSGIKQRELTVVLGTFGAGKSFLHKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  4356

Range 2: 3330 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
678.8 bits(1475) 0.0 328/343(96%) 0/343(0%) Minus/Minus
Query        1  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  1029
                *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLL RKLFPAPNVPSTTVNSLCLM EVDTPASQGFESLNFSSLITPVKPPSKHP*SFSA SKLGKYVIFDPF+ESRSRADRLTFRSSSTF+L*GPLPIFSTCLMCSFVMS RADMRPPGLITSISPLTSHLAQMSKAS ASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADA+AVIMQPLRGAQG*K* DFKHKIPHRGHSFSPNFQLTSYSGV+MISLT CLTQNKAIISFSA*AFSPSCFR+VG ERA STGDSLSTNDLIPAFKA+PS
Subject   3330  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLCRKLFPAPNVPSTTVNSLCLMPEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSARSKLGKYVIFDPFKESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSKRADMRPPGLITSISPLTSHLAQMSKASNASAKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAIAVIMQPLRGAQG*K*LDFKHKIPHRGHSFSPNFQLTSYSGVIMISLT*CLTQNKAIISFSA*AFSPSCFRIVGFERAGSTGDSLSTNDLIPAFKARPS  4358

Range 3: 3331 to 4254 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
632.9 bits(1375) 0.0 269/308(87%) 0/308(0%) Minus/Minus
Query        2  IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV  925
                IHF VPFD*I *SPPR*DKCYKFSFRSLHEALV*ETLSSPKC KH+CQ  LF+ RS H+SKPRL*IVKFLITYHAS TSQQAPLKFFRPLKTWKICYL*PVQRKQV+S*SFNFSQLIHLY LRPVTNLFDMPNVFIRYVK+SRYAPAWI+NFNF IDITF TDVESLK FCQIHHIQTPPLT*LFKDVIGA PT*VIEHVYLTPSKC*CN C HAAIKRGTRLKMI L TQNST*RP I PKLPAH IFW Y+DQSHM+PN E*GNHFIFCISIFTKLLPY W  KS IN *FTFH+RPYS LQS T+
Subject   3331  IHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCAKHDCQFSLFDARSRHSSKPRL*IVKFLITYHAS*TSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPVTNLFDMPNVFIRYVKKSRYAPAWIDNFNFTIDITFSTDVESLKRFCQIHHIQTPPLT*LFKDVIGAGPT*VIEHVYLTPSKC*CNSCNHAAIKRGTRLKMIGL*TQNST*RPFILPKLPAHFIFWRYNDQSHMMPNTE*GNHFIFCISIFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS*TI  4254

Range 4: 4300 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 18/19(95%) 0/19(0%) Minus/Minus
Query      971  TSL*ACNFPKEDFKGNDIP  1027
                TSL*ACNFPK+DFKGNDIP
Subject   4300  TSL*ACNFPKKDFKGNDIP  4356

Range 5: 3342 to 4238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
602.7 bits(1309) 0.0 261/299(87%) 0/299(0%) Plus/Plus
Query       13  FEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK  909
                FEG NKVV GK*IT * SSF+PN+TEATW*KCLCRK*NDCLIL *A CETDH+N RI* ELEVWG+*+ASMWNFVF+V+SFSTLCPS*WLHD S+CISTWKA*GRRAQLLM*A+HQSHL*RAMSRGGSEYDVFGRS *GFRHLC M*CQW N*SY SRRAHICS *HNE*TH*ACRKDW*RASK+KGG*AAKS*TISS PAF ERVKDNIFSKF* GGKTSGVLAGRF+WRDK**EI*RFKALACW V F H TK +DS AW+IWGWKEFP QELHEEI*RKICNICLT*AGSS+FNQK
Subject   3342  FEGGNKVVCGK*ITG*SSSFKPNYTEATW*KCLCRK*NDCLILC*ASCETDHYNARI*SELEVWGE*MASMWNFVFKVQSFSTLCPS*WLHDYSYCISTWKA*GRRAQLLM*AQHQSHL*RAMSRGGSEYDVFGRSV*GFRHLC*M*CQW*N*SYQSRRAHICSF*HNE*TH*ACRKDW*RASKYKGG*AAKS*TISS*PAFFERVKDNIFSKF*AGGKTSGVLAGRFNWRDK**EI*RFKALACWSVYFWHQTKRIDSRAWHIWGWKEFPTQELHEEI*RKICNICLT*AGSSKFNQK  4238

Range 6: 4281 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/26(96%) 0/26(0%) Plus/Plus
Query      952  QIKEGGLGCRYL*SLP*ESYRPKGWS  1029
                QIKEGGLGCRYL*SL *ESYRPKGWS
Subject   4281  QIKEGGLGCRYL*SLS*ESYRPKGWS  4358

Range 7: 4223 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 11/14(79%) 0/14(0%) Plus/Plus
Query      894  RIQSKGT*KWMKSV  935
                +IQSKGT KWM SV
Subject   4223  QIQSKGTWKWMMSV  4264

Range 8: 3341 to 4318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
608.2 bits(1321) 0.0 289/326(89%) 0/326(0%) Minus/Minus
Query       12  QR*RHXXXXXXXXXXXXPYTLHPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSK  989
                QR*RHPSPPSLICLPS PYT HPF GPF*LN LEPA*VRQMLQIFLQISS*SSC+GNSFQPQM QA+LS  FV*CQK T QQAKALNR*ISHHLSRQ NLPASTPEVFPP+QNLENMLSLTRS+KAG ELIV*LFAAHPPL FEARYQSFRHA*CVHSLCQ EQICARLD**LQF H*HHI HRCRKPQ LLPNTSYSDPPLDIALQRCDWC AYISN*ARLPHAFQVLMQ L SCSH*EGHKVEND T NTKFHIEA H PQTSSS HIL L**SVSH A* RIRQSFHFLHKHFHQVASV LG KEL+Q VIHFP+TTLF PSK
Subject   3341  QR*RHPSPPSLICLPSLPYTHHPFPGPF*LNLLEPA*VRQMLQIFLQISS*SSCVGNSFQPQMCQARLSILFV*CQK*TLQQAKALNR*ISHHLSRQLNLPASTPEVFPPAQNLENMLSLTRSKKAGQELIV*LFAAHPPLYFEARYQSFRHA*CVHSLCQKEQICARLD**LQFHH*HHI*HRCRKPQTLLPNTSYSDPPLDIALQRCDWCWAYISN*ARLPHAFQVLMQ*L*SCSH*EGHKVENDWTLNTKFHIEAIHSPQTSSSLHILAL**SVSHDA*HRIRQSFHFLHKHFHQVASV*LGLKELDQPVIHFPQTTLFPPSK  4318

Range 9: 3341 to 4189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
510.1 bits(1107) 0.0 250/283(88%) 0/283(0%) Plus/Plus
Query       12  L*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXXPYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN  860
                L*R+E*GR WKVNH+LIQLF+ Q YGSNLVKMLMQKMK*LPYS LG M*D*S * QNM+*AGSLG+M+GLYVEFCV*S IIFNLVPLLMAA* Q LHQHLEGVR*TCSITYVG APITSLKSYVKGGV*I*CIWQK LRLSTSV NVMSM KLKL IQAGAYLL LT*RMNTLGMSKRLVTGLK *RWMSCEKLNDQL TCFL*TGQR*HIFQVL GRKNFRGACWEV*LA**VMRNLTIQSLGLL C LL  NK +*Q CL HLGLERVSYTRAS*RDLKEN
Subject   3341  L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVKMLMQKMK*LPYSVLGIM*D*SL*RQNMK*AGSLGRMNGLYVEFCV*SPIIFNLVPLLMAA*LQLLHQHLEGVR*TCSITYVGPAPITSLKSYVKGGV*I*CIWQKRLRLSTSVLNVMSMVKLKLSIQAGAYLLFLT*RMNTLGMSKRLVTGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLSGRKNFRGACWEV*LA**VMRNLTIQSLGLLECLLLASNKEN*QSCLAHLGLERVSYTRAS*RDLKEN  4189

Range 10: 4301 to 4357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/19(95%) 0/19(0%) Plus/Plus
Query      972  GMSLPLKSSLGKLQA*RLV  1028
                GMSLPLKS LGKLQA*RLV
Subject   4301  GMSLPLKSFLGKLQA*RLV  4357

Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome

Sequence ID: KR528585.1 Length: 8595 Number of Matches: 10

Range 1: 3313 to 4338 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
777.7 bits(1691) 0.0 324/342(95%) 0/342(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  1027
                DGLALKAGIRSFVESE  V+  LS+P I KQL ENAYAENEMIALFC+RHHVRLI+ITPEYEVSWKFGE EWPLCGILCLKS+HFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDS+PWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDE CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG
Subject   3313  DGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSSHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPRGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSRPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEGCKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  4338

Range 2: 3312 to 4340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
591.7 bits(1285) 0.0 290/343(85%) 0/343(0%) Minus/Minus
Query        1  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  1029
                *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH SSISRSLLIEFA+ARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQG ESLNFSSLITPV+PPSKHP*SFSA SKLGKYVIFDPF+ESRSRADRLTFRSSSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP  SHLAQMSKASKASAKYI+ RPPP* SSSK+*LVLGLH+* +TSTSRLPSA+AMAVIMQP  GA G K* D + +IPHRGHS SPNFQLTSYSGV+ ISLTWC  QN AIISFSA*AFS +C  M G ER+  T  SLST D IPAF+A PS
Subject   3312  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHPSSISRSLLIEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGLESLNFSSLITPVRPPSKHP*SFSARSKLGKYVIFDPFKESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSLVMSNNAEILPRGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFNGAHGWK*LDLRQRIPHRGHSPSPNFQLTSYSGVITISLTWCRIQNNAIISFSA*AFSSNCLEMAGAERSGFTKRSLSTKDRIPAFRASPS  4340

Range 3: 3313 to 4236 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
442.8 bits(960) 0.0 198/308(64%) 0/308(0%) Minus/Minus
Query        2  IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV  925
                IH  VPFD*I *SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTK+NCQ  LFNV S*H+SKPR *I+KFL+ YH S TSQQAPLKFFRPLKTWKICYL*PVQRKQV+S*SFNFSQLIH Y LRP+TNLFDMP V I YVKQ R     IN+FN +I ITF  +V+ LKSF  IHH++TP LT L K++I A  T +I H+  TPSKC* NGC HA I+ GT L++ * + +NS   P  FPK P   IFWC   Q HMVPN +* NH I  ISI  +L   GW  K  I    T H+R  + LQ +++
Subject   3313  IHLQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKYNCQFSLFNVGS*HSSKPRP*IIKFLVAYHTS*TSQQAPLKFFRPLKTWKICYL*PVQRKQVKS*SFNFSQLIHFYTLRPITNLFDMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKTPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGTWLEVT*FKAKNSAQGPFTFPKFPTDFIFWCDYYQPHMVPNTK*CNHLILGISILFQLFRNGWG*KIWIYQALTLHKRSNTGLQGKSI  4236

Range 4: 4282 to 4338 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 15/19(79%) 0/19(0%) Minus/Minus
Query      971  TSL*ACNFPKEDFKGNDIP  1027
                TSL*ACNFPK++FKG++IP
Subject   4282  TSL*ACNFPKKNFKGDNIP  4338

Range 5: 3327 to 4220 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
413.9 bits(897) 0.0 192/298(64%) 0/298(0%) Plus/Plus
Query       16  EGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK  909
                EGR  +  G+*      SF P+H      +CLCR+*+DC+IL  APCE D ++TRI* +LE+WG+*+A + N +  +KS  T+CP  WLHD+SHC STWKA*    +L +* +H S+ * A+S  GS +DVF  SF*G  HL  M* +WR+*S *S   + C V*HN * H ACRKDW* ASK+K G*AAKS*TISS PAF ERVKDNIFSKF* GGKTSGVLAGR +W DK  EI* FKALACW VNF H*TK +DSC WYIWGWKEFPIQELHEEI*RKICNICLT*AG S+FNQK
Subject   3327  EGRYSIFCGE*ALGKSRSFSPSHF*TIGRECLCRE*DDCIILYSAPCEADSNHTRI*SQLEIWGR*MAPVRNSLP*IKSLPTMCPIEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGS*HDVFS*SF*GL*HLR*M*YKWRD*SD*SAW*NFCIV*HN**AHKACRKDW*WASKYKSG*AAKS*TISS*PAFFERVKDNIFSKF*AGGKTSGVLAGRSNWCDKRREI**FKALACWSVNFRH*TKRIDSCTWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQK  4220

Range 6: 4263 to 4340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 22/26(85%) 0/26(0%) Plus/Plus
Query      952  QIKEGGLGCRYL*SLP*ESYRPKGWS  1029
                QIKEGGLGC +L*S  *ESYRPKGWS
Subject   4263  QIKEGGLGCCHL*SFS*ESYRPKGWS  4340

Range 7: 3326 to 4300 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
386.4 bits(837) 0.0 209/325(64%) 0/325(0%) Minus/Minus
Query       15  QR*RHXXXXXXXXXXXXPYTLHPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPS  989
                QR*+HPSPPSLICLPSPPYT HP  GPF*LN L+PA*VRQMLQIFLQISS*SSCIGNSFQPQMYQ QLS  FV*C+KLT QQAKALN *IS  LS Q +LPASTPEVFPP+QNLENMLSLTRS+KAG ELIV*LFAAHP L FEA YQSFRHA C H LCQT Q     D* LQ  H +HI  +C++PQKL  NTS  DP  D A Q+ D C  Y  N     HAFQVL QWL SC+H  GH V +DL    +F   A H PQ S+  HILV   S SHGA  +I QS H  HKH   +   WLG K+L+    H P+   + PS
Subject   3326  QR*QHPSPPSLICLPSPPYTPHPSPGPF*LNLLKPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQVQLSILFV*CRKLTLQQAKALNH*ISRRLSHQLDLPASTPEVFPPAQNLENMLSLTRSKKAGQELIV*LFAAHPLLYFEAHYQSFRHALCAH*LCQTMQKFYHAD*SLQSLHLYHI*RKCQRPQKLQLNTSC*DPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSMGHMVGSDLI*GKEFRTGAIHLPQISN*LHILV*LLSASHGAEYKIMQSSHSRHKHSLPIV*KWLGLKDLDLPSAHSPQKIEYRPS  4300

Range 8: 3446 to 4171 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
314.5 bits(680) 0.0 160/242(66%) 0/242(0%) Plus/Plus
Query      135  YSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR*TCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN  860
                Y   GTM* *   HQNM+  G+LGK++G   EF   +Q+  N VP  M A* QPL QHLEGV+  C I  V  A I  L+S+V+ GV  *CI  KLLR  T   NV+ M +LK LI+   +L CLT* M+T GMSKRLV GLK *+WMSCEKLNDQL TCFL*TGQR*HIFQVL GRKNFRGACWEV*L **  RNL IQ LGLL CQL TLNK +*QL LVHLGLERVSYTRAS*RDLKEN
Subject   3446  YFVFGTM*G***SHQNMKSVGNLGKVNGPCAEFFALNQVTSNHVPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGVLT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMSKRLVMGLKV*KWMSCEKLNDQLLTCFL*TGQR*HIFQVLSGRKNFRGACWEV*LV**ATRNLMIQGLGLLECQLPTLNKEN*QLYLVHLGLERVSYTRAS*RDLKEN  4171

Range 9: 4205 to 4339 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 36/45(80%) 0/45(0%) Plus/Plus
Query      894  RIQSKGT*KWMKSVXXXXXXXXXXXXGMSLPLKSSLGKLQA*RLV  1028
                +IQSKGT +WM+ VRW*RQANQRRRAGM  PLK  LGKLQA*RLV
Subject   4205  QIQSKGTWRWMRGVRW*RQANQRRRAGMLSPLKFFLGKLQA*RLV  4339

Range 10: 3350 to 3406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 8/19(42%) 0/19(0%) Plus/Plus
Query       39  WKVNHQLIQLFRAQPYGSN  95
                W+V+   IQ+F+ QP+ +N
Subject   3350  WRVSAW*IQIFQPQPFLNN  3406

Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome

Sequence ID: KR054734.1 Length: 8753 Number of Matches: 12

Range 1: 3331 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
771.8 bits(1678) 0.0 316/342(92%) 0/342(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  1027
                DGLALKAGIRSFVESES VD +LS+ T+ +QL +NAYAENEMIALFC+RHHVRLIIITPEYEVSWKFG++EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINPGGR+SALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWL+G+STSDIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ CKV KAGKSKKEGWDVVTFEVFLRK+  LKAG
Subject   3331  DGLALKAGIRSFVESESLVDPSLSAQTVLRQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKKEGWDVVTFEVFLRKIANLKAG  4356

Range 2: 3462 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
521.1 bits(1131) 0.0 248/298(83%) 0/298(0%) Minus/Minus
Query      133  PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNK  1026
                PAFR   FLR TSKVTTSQPSFFDLPAF TL  SSIS+SLLIEFARA LGET VTN PSDLF+KLLYRKL PAP VPSTTVNS  L+SEVD P S G ESLNFSSLITPVKPPSKHP SFSALSKLGK VIFDPF E RSRADR TF SSSTFML GPLPIFSTCL+CS VMSNRADMRPPGL+TSISPL SHLAQMS ASKASA+YI+F+PPP*HSSS M* V GLH+*L TSTSRLPSA+A+AVIMQP  GAQG*K*FD KHKIPHRGHS SPNFQLTSYSGV+MISLT CL QNK
Subject   3462  PAFRFAIFLRNTSKVTTSQPSFFDLPAFATLQLSSISKSLLIEFARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLISEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTFLSSSTFMLCGPLPIFSTCLICSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHRGHSLSPNFQLTSYSGVIMISLT*CLMQNK  4355

Range 3: 3330 to 3425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 17/32(53%) 0/32(0%) Minus/Minus
Query        1  SCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  96
                SC + V  ++  ST DSLST + +PAFKA PS
Subject   3330  SCLKTVWADKDGSTRDSLSTKERMPAFKASPS  3425

Range 4: 3331 to 4254 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.1 bits(749) 0.0 162/308(53%) 0/308(0%) Minus/Minus
Query        2  IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKS*INW*FTFHERPYSCLQSQTV  925
                IHF V F+*I *SP  *+K Y+F+FR LH+ALV +  +S K  KH+CQL  F++RS*++ +P L IVK LITYH S    Q PL+ F P KTWK+ YL* +  K+V+S SF+FSQLIHLYALR V NL +M N+ + YVK S +APA +++ N  IDIT   +V+  +SF +IHH+QT  LT LFK VI   P  V+++++ T ++   + C HAAI  GTRLKMI*LQ  +ST RPL   KLP HLIFW  +DQ HM+PNA+*G HF+ CISI T+L   G   +  I   FTF+ER Y+C QS+ +
Subject   3331  IHFQVSFN*IC*SPSG*NKGYEFAFRPLHKALVQKAFTSSKGAKHDCQLSRFDIRS*YS*EPWLGIVKLLITYHTS*AP*QTPLQLFSPFKTWKVSYL*SIH*KEVKSRSFHFSQLIHLYALRAVANLLNMSNMLVGYVK*S*HAPARVDDLNLPIDITLSANVKCFESFSEIHHVQTTTLTQLFKYVICGGPAQVVKNIHFTSTERRGDSCDHAAI*WGTRLKMI*LQA*DSTQRPLAISKLPTHLIFWGNNDQPHMMPNAK*GYHFVLCISIITELPQNGLG*QRWIYKRFTFNERTYACFQSKPI  4254

Range 5: 4300 to 4341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 9/14(64%) 0/14(0%) Minus/Minus
Query      971  CNFPKEDFKGNDIP  1012
                CNFPK+ FKG+++P
Subject   4300  CNFPKKHFKGHNVP  4341

Range 6: 3678 to 4238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 96/187(51%) 0/187(0%) Plus/Plus
Query      349  AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK  909
                A H+SH+*RA+SR   E+DV   SF    HL  +* QW +* +   RAH+ S+*HN+  +* C +DW R ++HKGG*A KS TI S P F+E +KDN+ SKF*+G K +GV A   +W DK**E+*RF+A+A   +NF*+    VDS AW++W W +  +QEL+EE+*R+I N+C T  GSS+FN K
Subject   3678  ALHKSHI*RAVSRWWFEHDVSR*SFRSI*HLR*V*YQWGD*GHQPWRAHVSSI*HNQRAY*TC*EDWQRPAEHKGG*AEKSETICS*PPFNEWIKDNLLSKF*KG*KAAGVFARGLNWCDK**EV*RFQAMALRNINF*YQISRVDSRAWHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSKFN*K  4238

Range 7: 3342 to 3626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 55/95(58%) 0/95(0%) Plus/Plus
Query       13  FEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSH  297
                FE R+   R K*I+       PN  EA  * CLCR+ ND LIL *A CE DH+  RI*GELEVW   VAS+WN +  VKSFSTLCP  WLHD+S+
Subject   3342  FESRHTFFR*K*ISCRSIFVSPNRFEAAQ**CLCRERNDSLILH*ASCEADHYYPRI*GELEVWR*RVASVWNLMLAVKSFSTLCPIKWLHDHSY  3626

Range 8: 4313 to 4351 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 10/13(77%) 0/13(0%) Plus/Plus
Query      984  PLKSSLGKLQA*R  1022
                PLK  LGKLQ *R
Subject   4313  PLKCFLGKLQT*R  4351

Range 9: 3341 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
284.2 bits(614) 0.0 157/305(51%) 0/305(0%) Minus/Minus
Query       12  HPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSK  926
                HPF   F*LN LEP  V+Q L+I LQ SS*SSC  + +Q Q  QA+LST  +* QKL   +A A NR* SHHLS Q +  A+TP  F P QNLE+ LSL  S K G E IV LF+AHPPLC   R QS +H *    LCQ E  CAR  ** Q  H*+H   +C+  +KL  +TS S+  LD ALQ CD   A   +*    H ++   + L SCSH  GHKVENDLT++ +FH EAT + QTS+SPHIL  **S SH A* +IR SF  LHKH+H  AS   G  +++   IHF R  + L SK
Subject   3341  HPFPSLF*LNLLEPFWVKQRLRICLQTSS*SSCTESFYQLQRCQARLSTLEI*YQKLIFLRAMAWNR*TSHHLSHQLSPLANTPAAFQPFQNLESKLSLIHSLKGGQEQIVSLFSAHPPLCSAGRCQSSQHV*YARWLCQIELTCARQG**PQSPH*YHT*RKCQMLRKLQRDTSCSNHHLDTALQICDLWRACTGS*EHPLHVYRAQRR*L*SCSHLMGHKVENDLTASIRFHTEATRYLQTSNSPHILG***SASHDA*CKIRLSFRSLHKHYH*AASKRFGLTKMDLQEIHFQRKNVCLLSK  4255

Range 10: 3668 to 4189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 90/174(52%) 0/174(0%) Plus/Plus
Query      339  TYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLKEN  860
                T  G   IT LKS VK  V* *CI  KL +  T   +V+SM +L+    AGA  L LT*  + L M +RL T  +A*RWMS EK ND L T F *  QR*  FQVL+G K+ RG C   *L **VMR+LTI S G    QLL  N  S*Q CL  L L +   TRA *R LK N
Subject   3668  TCAGPPQITYLKSCVKVVV*T*CISLKLSKHLTFALSVISMGRLRSSTLAGACQLYLT*PTSILDMLRRLATARRA*RWMS*EK*NDLLLTSFQ*MDQR*LTFQVLKGLKSCRGVC*GA*LV**VMRSLTIPSHGSQEYQLLISNLES*QSCLAPLELVKAFCTRAL*RGLKAN  4189

Range 11: 3461 to 3622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 36/54(67%) 0/54(0%) Plus/Plus
Query      132  PYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**Q  293
                PY ALG M* *S   QNMR* GSL   SGL VE    SQIIFNLVP  MAA* Q
Subject   3461  PYFALGIM*G*SLLPQNMR*VGSLEIASGLCVESYACSQIIFNLVPH*MAA*SQ  3622

Range 12: 4281 to 4352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.1 bits(42) 0.0 12/24(50%) 0/24(0%) Plus/Plus
Query      952  QIKEGGLGCRYL*SLP*ESYRPKG  1023
                QIK+  LG   L*S+ *E+ +P+G
Subject   4281  QIKKRRLGRCDL*SVS*ENCKPEG  4352

Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome

Sequence ID: KX274274.1 Length: 8725 Number of Matches: 7

Range 1: 3331 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
766.3 bits(1666) 0.0 314/342(92%) 0/342(0%) Plus/Plus
Query        2  DGLALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  1027
                DGLALKAGIRSFVESES  D ALS+ T+ KQLG+NAYAENEMIALFC+RHHVRLIIITPEYEVSWKFG++EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP GR+SALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWL+G+STS+IK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK+DLEMD+ CKV KAGKSK+EGWDVVTFEVFLRK+  LKAG
Subject   3331  DGLALKAGIRSFVESESIADPALSTQTVLKQLGDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPSGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDDGCKVAKAGKSKREGWDVVTFEVFLRKIENLKAG  4356

Range 2: 3330 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
546.8 bits(1187) 0.0 273/342(80%) 0/342(0%) Minus/Minus
Query        1  PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVKPPSKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFML*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXKYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVMMISLTWCLTQNKXXXXXXXXXXSPSCFRMVGLERAESTGDSLSTNDLIPAFKAKPS  1026
                PAFR   FLR TSKVTTSQPS FDLPAF TL  SSISRS LIE ARA LGET VTN PSDLF+KLLYRKL PAP VPSTTVNS  L+ EVD P S G ESLNFSSLITPVKPPSKHP SFSALSKLGK VIFDPF E RSRADR TF SSSTFML GPLPIFSTCL+CS VMSN+ADMRP GLITSISPL SHLAQMS ASKASA+YI+FRPPP H+SSK+* V GLH+*L TSTSRLPSA+A+AVIMQP  GAQG*K*FD KHKIPH+GHS SPNFQLTSYSGV+MISLT CL QNKAIISFSA*A SPSCF+ V ++RA S  DSLSTN+ +PAFKA PS
Subject   3330  PAFRFSIFLRNTSKVTTSQPSLFDLPAFATLQPSSISRSFLIELARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTFLSSSTFMLCGPLPIFSTCLICSLVMSNKADMRPLGLITSISPLISHLAQMSNASKASARYIMFRPPPWHNSSKI*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHKGHSLSPNFQLTSYSGVIMISLT*CLMQNKAIISFSA*ALSPSCFKTVWVDRAGSAMDSLSTNERMPAFKASPS  4355

Range 3: 3418 to 4254 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
314.0 bits(679) 0.0 144/279(52%) 0/279(0%) Minus/Minus
Query       89  IHF*VPFD*IR*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQLPLFNVRS*HTSKPRL*IVKFLITYHASQTSQQAPLKFFRPLKTWKICYL*PVQRKQVQS*SFNFSQLIHLYALRPVTNLFDMPNVFIRYVKQSRYAPAWINNFNFAIDITFGTDVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVYLTPSKC*CNGCYHAAIKRGTRLKMI*LQTQNST*RPLIFPKLPAHLIFWCYDDQSHMVPNAE*GNHFIFCISIFTKLL  925
                IHF V F+*I *SPP *+K Y+ +FR LH+A V +  +  K +KH+CQ P F++ S*+  +P L I+KFLITY+ S  S Q  L+ F PLK WK+ YL  +  K+V+S SF+FSQ IHLYALR + NL ++  +FI YVK S +A A INN NF+I+IT GT+VE  +   ++HH+Q   L   FKD+I      +++ ++LT ++   N  YHAAI+ GT LKMI*LQ QNST*RPL   K P HLI W  +DQ HM+PNAE*G H + CISI  KLL
Subject   3418  IHFQVLFN*IS*SPPG*NKGYELTFRPLHKAFVQKAFACSKSSKHDCQFPRFDI*S*YP*EPWLGIIKFLITYNTS*AS*QTSLQLFSPLKAWKVSYLRSIH*KEVKSRSFHFSQFIHLYALRAIANLLNVSYMFIGYVK*S*HASARINNLNFSINITLGTNVECFEGLSEVHHVQATTLAQFFKDMICGRSAQIVKDIHLTSAERRGNSGYHAAIQWGTGLKMI*LQAQNST*RPLTISKFPTHLILWGDNDQPHMMPNAE*GYHLVLCISIVAKLL  4254

Range 4: 3330 to 4238 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
303.9 bits(657) 0.0 149/303(49%) 0/303(0%) Plus/Plus
Query        1  RRFGFEGRNKVVRGK*ITS*FSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHHNTRI*GELEVWGK*VASMWNFVFEVKSFSTLCPS*WLHDNSHCISTWKA*GRRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLCQM*CQWRN*SY*SRRAHICSV*HNE*TH*ACRKDW*RASKHKGG*AAKS*TISSGPAFSERVKDNIFSKF*EGGKTSGVLAGRFDWRDK**EI*RFKALACWCVNF*H*TKGVDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSEFNQK  909
                RR  FE  +  +  K*I    SS  PN  EATW +CLCR+ +D LIL *A CE DH++ R+*GELE+W  *VA MWNFV  +KSFSTLCP  WLHDN +C+   + *G    L +   H+S+L*R + R   E+DV        RHLCQ+*  WRN* Y*S R H+  +*HN+*T+    +DW   ++HKGG*  KS TI S P F+E ++DN+ SK *EG K +G+ A R +W  K**EI* F+A+A   +NF +   G+DS AW  W  ++  +Q+L+EE+*R + N+C T  GSS FN K
Subject   3330  RRACFESWHTFIC*K*IHCRSSSVNPNSFEATWRQCLCRERDDSLILH*ASCEADHYHPRV*GELEIWR**VAFMWNFVLAIKSFSTLCPIEWLHDNRYCLCARQT*GGCP*LSVQTFHKSYL*RIVPRWWPEHDVPR*GLRSIRHLCQV*Y*WRN*GY*S*RTHVSFI*HNQ*TYKTR*EDWQWPAEHKGG*TEKSETICS*PPFNEWIEDNLLSKL*EG*KAAGMFARRLNWCYK**EI**FQAMALRDINFKYQISGIDSRAWNFWSRQKLSVQKLYEEV*R*VRNLCFTQEGSS*FN*K  4238

Range 5: 3332 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.7 bits(602) 0.0 152/308(49%) 0/308(0%) Minus/Minus
Query        3  HPFLGPF*LNSLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMYQAQLSTPFV*CQKLTHQQAKALNR*ISHHLSRQSNLPASTPEVFPPSQNLENMLSLTRSEKAGPELIV*LFAAHPPLCFEARYQSFRHA*CVHSLCQTEQICARLD**LQFRH*HHIWHRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARLPHAFQVLMQWLLSCSH*EGHKVENDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFHQVASVWLGSKELNQLVIHFPRTTLFLPSKPNR  926
                HPF GPF*LN LEP+ V+Q L+ +LQ SS*S C  +    Q +QA+LS P +*  KL   +A A N *ISHHL  Q +L A+ P  F PSQ+LE+ LS   S K G E IV LF+ HPPLC     QS +    VH LCQ +  C R D** QF H*+H WH+CR  ++    TS S   L   LQR D       +*   PH  +   Q  LSCSH  GH+VENDL ++TKFHI+ATH+ Q S+SPH L  **S SH A* RIR S   LHKH  QVAS   G  EL+   IHF +  +   SK  R
Subject   3332  HPFPGPF*LN*LEPSWVKQRLRTYLQTSS*SFCTESFCLLQKFQARLSIPEI*YLKLISLRAMAWNH*ISHHL*HQLSLLANIPAAFQPSQSLESKLSSIHSLKGGQEQIVSLFSVHPPLCSAGHCQSSQRVLYVHWLCQIKLTCVR*D**PQFLH*YHTWHKCRMLRRPQRGTSCSGHHLGTILQRYDLWKVCTDS*GHPPHVCRAQRQ*RLSCSHSMGHRVENDLIASTKFHIKATHYLQISNSPHTLG***SASHDA*CRIRLSSRSLHKHCRQVASKLFGLTELDLQWIHFQQMNVCQLSKQAR  4255

Range 6: 3689 to 4183 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 79/165(48%) 0/165(0%) Plus/Plus
Query      360  ITSLKSYVKGGV*I*CIWQKLLRLSTSVPNVMSMAKLKLLIQAGAYLLCLT*RMNTLGMSKRLVTGLKA*RWMSCEKLNDQLWTCFL*TGQR*HIFQVLRGRKNFRGACWEV*LA**VMRNLTIQSLGLLVCQLLTLNKGS*QLCLVHLGLERVSYTRAS*RDLK  854
                I SLK+  K   * *C   +  + ST VP+V+ M KL+LLI A A  L LT* MN     +RL    +A*RWM+ EK ND L T F *  +R*  FQ LRG K+ R  C E *L  *VMRNL I S G    QL   N G+*Q CL  L   +   T+A *R LK
Subject   3689  IISLKNCAKVVA*T*CTSLRPSKHSTFVPSVILMEKLRLLILADACQLYLT*PMNI*DTLRRLAMARRA*RWMN*EK*NDLLLTSFQ*MDRR*LTFQALRGLKSCRDVC*EA*LVL*VMRNLMIPSHGSQGYQLQISNLGN*QSCLELLEQAKAFCTKAL*RGLK  4183

Range 7: 3461 to 3652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 39/64(61%) 0/64(0%) Plus/Plus
Query      132  PYSALGTM*D*SS*HQNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMAA**QPLHQHLEGVR  323
                PYSALG M* *S   Q+MR* G+L  +SGLYVEFC  +QIIFN VP  MAA**  L      VR
Subject   3461  PYSALGIM*G*SLSPQSMR*VGNLEIVSGLYVEFCACNQIIFNPVPH*MAA**PLLPLRSADVR  3652

Nucleotide Sequence (117 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
117

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 4

Range 1: 4257 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 34/34(100%) 0/34(0%) Plus/Minus
Query        1  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS  102
                *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS
Subject   4257  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS  4358

Range 2: 4261 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 32/32(100%) 0/32(0%) Minus/Plus
Query        3  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  98
                CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG
Subject   4261  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  4356

Range 3: 4245 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 33/38(87%) 0/38(0%) Minus/Plus
Query        1  RSSMTV*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWS  114
                R+   V*GGEGRQIKEGGLGC YL*SLP*ESYRPKGWS
Subject   4245  RNG*RV*GGEGRQIKEGGLGCCYL*SLP*ESYRPKGWS  4358

Range 4: 4300 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 18/19(95%) 0/19(0%) Plus/Minus
Query        3  TSL*ACNFPKEDFKGNDIP  59
                TSL*ACNFPKEDFKGN+IP
Subject   4300  TSL*ACNFPKEDFKGNNIP  4356

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 4

Range 1: 4257 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 34/34(100%) 0/34(0%) Plus/Minus
Query        1  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS  102
                *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS
Subject   4257  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHS  4358

Range 2: 4261 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 32/32(100%) 0/32(0%) Minus/Plus
Query        3  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  98
                CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG
Subject   4261  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  4356

Range 3: 4260 to 4358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 31/33(94%) 0/33(0%) Minus/Plus
Query        1  V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWS  99
                V*G EGRQIKEGGLGCRYL*SL *ESYRPKGWS
Subject   4260  V*GSEGRQIKEGGLGCRYL*SLS*ESYRPKGWS  4358

Range 4: 4300 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 18/19(95%) 0/19(0%) Plus/Minus
Query        3  TSL*ACNFPKEDFKGNDIP  59
                TSL*ACNFPK+DFKGNDIP
Subject   4300  TSL*ACNFPKKDFKGNDIP  4356

Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome

Sequence ID: KR528585.1 Length: 8595 Number of Matches: 3

Range 1: 4242 to 4340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 33/33(100%) 0/33(0%) Plus/Minus
Query        1  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  99
                *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH
Subject   4242  *PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLH  4340

Range 2: 4243 to 4338 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 32/32(100%) 0/32(0%) Minus/Plus
Query        3  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  98
                CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG
Subject   4243  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  4338

Range 3: 4242 to 4340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 29/33(88%) 0/33(0%) Minus/Plus
Query        1  V*GGEGRQIKEGGLGCRYL*SLP*ESYRPKGWS  99
                V*GGEGRQIKEGGLGC +L*S  *ESYRPKGWS
Subject   4242  V*GGEGRQIKEGGLGCCHL*SFS*ESYRPKGWS  4340

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 2

Range 1: 4261 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 30/32(94%) 0/32(0%) Minus/Plus
Query        3  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  98
                CKV KAGKSKKEGWDVVTFEVFLRKV+GLKAG
Subject   4261  CKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAG  4356

Range 2: 4263 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 26/31(84%) 0/31(0%) Plus/Minus
Query        4  PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL  96
                PAF+P TFLRKTSKVTTS PSFFDLPA  TL
Subject   4263  PAFKPETFLRKTSKVTTSHPSFFDLPALATL  4355

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 2

Range 1: 4261 to 4356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 30/32(94%) 0/32(0%) Minus/Plus
Query        3  CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAG  98
                CKV KAGKSKKEGWDVVTFEVFLRKV+GLKAG
Subject   4261  CKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAG  4356

Range 2: 4263 to 4355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 26/31(84%) 0/31(0%) Plus/Minus
Query        4  PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTL  96
                PAF+P TFLRKTSKVTTS PSFFDLPA  TL
Subject   4263  PAFKPETFLRKTSKVTTSHPSFFDLPALATL  4355

Nucleotide Sequence (192 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
192

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7

Range 1: 3239 to 3427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 63/63(100%) 0/63(0%) Minus/Plus
Query        2  QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL  190
                QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL
Subject   3239  QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL  3427

Range 2: 3238 to 3426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 62/63(98%) 0/63(0%) Plus/Minus
Query        3  KLLPYGWARKS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  191
                KLLPYGWARKS INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*
Subject   3238  KLLPYGWARKSWINW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  3426

Range 3: 3238 to 3426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 60/63(95%) 0/63(0%) Minus/Plus
Query        3  SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL  191
                SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS PTIRKQL
Subject   3238  SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSGPTIRKQL  3426

Range 4: 3239 to 3427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 60/63(95%) 0/63(0%) Plus/Minus
Query        2  QVASVWLGSKELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL  190
                QVASVWLG KEL+QLVIHFPRTTLFLPSKPNRRC*EESQLSAKSS+HHQAQEKC*SLQFRNQL
Subject   3239  QVASVWLGPKELDQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSYHHQAQEKC*SLQFRNQL  3427

Range 5: 3237 to 3428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.9 bits(305) 0.0 61/64(95%) 0/64(0%) Plus/Minus
Query        1  PSCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD  192
                PSCFRMVG ERA STGDSLSTNDLIPAFKAKPSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD
Subject   3237  PSCFRMVGPERAGSTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD  3428

Range 6: 3324 to 3428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 33/35(94%) 0/35(0%) Minus/Plus
Query        1  QHRRFGFEGRNKVVRGK*ITS*FSSFEPNHTEATW  105
                QHRRFGFEGRNKVVRGK*ITS* SSF PNHTEATW
Subject   3324  QHRRFGFEGRNKVVRGK*ITS*SSSFGPNHTEATW  3428

Range 7: 3237 to 3278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/14(100%) 0/14(0%) Minus/Plus
Query      151  IS*FRN*RLQHFSC  192
                IS*FRN*RLQHFSC
Subject   3237  IS*FRN*RLQHFSC  3278

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7

Range 1: 3238 to 3426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 60/63(95%) 0/63(0%) Minus/Plus
Query        3  SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL  191
                SADFEIEDFNTFPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESESPVD ALS+PTIRKQL
Subject   3238  SADFEIEDFNTFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESPVDPALSNPTIRKQL  3426

Range 2: 3237 to 3428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(301) 0.0 59/64(92%) 0/64(0%) Plus/Minus
Query        1  PSCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD  192
                PSCFR+VG ERA STGDSLSTNDLIPAFKA+PSVLRRKPTECQKQ PSPGTGKVLKSSISKSAD
Subject   3237  PSCFRIVGFERAGSTGDSLSTNDLIPAFKARPSVLRRKPTECQKQLPSPGTGKVLKSSISKSAD  3428

Range 3: 3239 to 3427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 50/63(79%) 0/63(0%) Minus/Plus
Query        2  QLISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSNL  190
                QL  KLKTSTLFLCLVMVTAFGTQL FF A  V L*R+E*GR WKVNH+LIQLF+ Q YGSNL
Subject   3239  QLTLKLKTSTLFLCLVMVTAFGTQLVFFLAQMV*L*RRE*GRLWKVNHRLIQLFQTQLYGSNL  3427

Range 4: 3239 to 3427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 49/63(78%) 0/63(0%) Plus/Minus
Query        2  QVASVWLGSKELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL  190
                QVASV LG KEL+Q VIHFP+TTLF PSK +  C*EE+QLSAKSS+HHQAQEKC*SLQF++QL
Subject   3239  QVASV*LGLKELDQPVIHFPQTTLFPPSKLDHLC*EENQLSAKSSYHHQAQEKC*SLQFQSQL  3427

Range 5: 3238 to 3426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 49/63(78%) 0/63(0%) Plus/Minus
Query        3  KLLPYGWARKS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  191
                KLLPY W  KS IN *FTFH+RPYS LQS T+ A+KK N*VPKAVTITRHRKSVEVFNF++S*
Subject   3238  KLLPYSWV*KSWINR*FTFHKRPYSRLQS*TICAKKKTN*VPKAVTITRHRKSVEVFNFKVS*  3426

Range 6: 3327 to 3428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 25/34(74%) 0/34(0%) Minus/Plus
Query        1  HRRFGFEGRNKVVRGK*ITS*FSSFEPNHTEATW  102
                HR   FEG NKVV GK*IT * SSF+PN+TEATW
Subject   3327  HRWSSFEGGNKVVCGK*ITG*SSSFKPNYTEATW  3428

Range 7: 3237 to 3278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/14(86%) 0/14(0%) Minus/Plus
Query      151  IS*FRN*RLQHFSC  192
                IS*  N*RLQHFSC
Subject   3237  IS*L*N*RLQHFSC  3278

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 4

Range 1: 3238 to 3426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 52/63(83%) 0/63(0%) Minus/Plus
Query        3  SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL  191
                SAD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESES VDS  SSP I +QL
Subject   3238  SADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESLVDSTFSSPIISRQL  3426

Range 2: 3237 to 3428 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.4 bits(241) 0.0 47/64(73%) 0/64(0%) Plus/Minus
Query        1  PSCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD  192
                PSC  M+GLE+ EST DSLSTN+ +PAFKA PSVL + PTECQKQ PSPGT KVLKSSIS SA+
Subject   3237  PSCLEMIGLEKVESTNDSLSTNERMPAFKASPSVLSKNPTECQKQLPSPGTEKVLKSSIS*SAE  3428

Range 3: 3238 to 3399 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 25/54(46%) 0/54(0%) Plus/Minus
Query       30  KS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS*  191
                K *I+ *FT +E  Y+CLQ   + A+ + N VP+A+T+  H K VE+ N  IS*
Subject   3238  KG*IHQ*FTLNE*TYACLQG*PICAK*EPNRVPEAITVAWH*KGVEIINIIIS*  3399

Range 4: 3239 to 3400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 22/54(41%) 0/54(0%) Plus/Minus
Query       29  KELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQL  190
                K LN  +IH  R  + LPS+    C*  +Q SA+S++   A ++C*+ Q+ NQL
Subject   3239  KRLNPPMIHSQRMNVCLPSRLAHLC*VRTQQSARSNYRRLALKRC*NHQYHNQL  3400

Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome

Sequence ID: KR054734.1 Length: 8753 Number of Matches: 3

Range 1: 3238 to 3426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 50/63(79%) 0/63(0%) Minus/Plus
Query        3  SADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL  191
                SAD++I+DFN FPVPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESES VD +LS+ T+ +QL
Subject   3238  SADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESESLVDPSLSAQTVLRQL  3426

Range 2: 3237 to 3425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.6 bits(201) 0.0 40/63(63%) 0/63(0%) Plus/Minus
Query        4  SCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSAD  192
                SC + V  ++  ST DSLST + +PAFKA PSVL +KPTECQKQ PSPGTG +LKSS+S SA+
Subject   3237  SCLKTVWADKDGSTRDSLSTKERMPAFKASPSVLNKKPTECQKQLPSPGTGNLLKSSMS*SAE  3425

Range 3: 3241 to 3378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 22/46(48%) 0/46(0%) Plus/Minus
Query       51  FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS  188
                FTF+ER Y+C QS+ +  +++ +*+PK VTITR+R+ V+V +  IS
Subject   3241  FTFNERTYACFQSKPICTQQETH*MPKTVTITRYREFVKVIDVIIS  3378

Grapevine rupestris stem pitting associated virus isolate SK704 C, complete genome

Sequence ID: KX274276.1 Length: 8726 Number of Matches: 5

Range 1: 3242 to 3427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 51/62(82%) 0/62(0%) Minus/Plus
Query        3  ADFEIEDFNTFPVPGDGDCFWHSVGFLLSTDGLALKAGIRSFVESESPVDSALSSPTIRKQL  188
                AD++I+DFNTF VPGDG+CFWHSVGFLLSTDGLALKAGIRSFVESE  V S LS+PTI KQL
Subject   3242  ADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSSDLSAPTISKQL  3427

Range 2: 3241 to 3426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.0 bits(211) 0.0 43/62(69%) 0/62(0%) Plus/Minus
Query        4  SCFRMVGLERAESTGDSLSTNDLIPAFKAKPSVLRRKPTECQKQSPSPGTGKVLKSSISKSA  189
                +C  +VG ER+E T  SLST D +PAF+A+PSVL +KPTECQKQ PSPGT KVLKSSIS SA
Subject   3241  NCLEIVGAERSELTRRSLSTKDRMPAFRARPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SA  3426

Range 3: 3242 to 3427 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 29/62(47%) 0/62(0%) Plus/Minus
Query        3  KLLPYGWARKS*INW*FTFHERPYSCLQSQTVGAEKKAN*VPKAVTITRHRKSVEVFNFEIS  188
                +L    W+ K * N  FTFHER  + LQS+T+  E++ N*+PKA+ ITR+ +SV++ N  IS
Subject   3242  QLFRNSWS*KI*TNQAFTFHERSNAGLQSKTISTEQETN*MPKAIAITRYGESVKIINIIIS  3427

Range 4: 3243 to 3401 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 24/53(45%) 0/53(0%) Plus/Minus
Query       29  KELNQLVIHFPRTTLFLPSKPNRRC*EESQLSAKSSHHHQAQEKC*SLQFRNQ  187
                K+LN   +HFPR     PS+ + + *  +QL+AKS+ HHQ + KC*+ Q+ NQ
Subject   3243  KDLN*PGVHFPRKIECRPSEQDHQY*ARNQLNAKSNCHHQVRRKC*NHQYHNQ  3401

Range 5: 3243 to 3425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 28/61(46%) 0/61(0%) Minus/Plus
Query        5  LISKLKTSTLFLCLVMVTAFGTQLAFFSAPTVWL*RQE*GRSWKVNHQLIQLFRAQPYGSN  187
                LI  L   TL   LVM  AFG QL   S   V L*R     SWKVN  L+Q+F+ Q + +N
Subject   3243  LIMILMILTLSPYLVMAIAFGIQLVSCSVLMVLL*RPAFDLSWKVNAWLVQIFQLQLFLNN  3425

Nucleotide Sequence (199 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8

Range 1: 1286 to 1483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 65/66(98%) 0/66(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  198
                LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL
Subject   1286  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL  1483

Range 2: 1285 to 1482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 65/66(98%) 0/66(0%) Plus/Minus
Query        2  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  199
                NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN
Subject   1285  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  1482

Range 3: 1286 to 1483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 62/66(94%) 0/66(0%) Plus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  198
                QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS+SYLTRKFEIGIMR  *INCLLAKAN HTLNIQ
Subject   1286  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKANQHTLNIQ  1483

Range 4: 1287 to 1481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.7 bits(305) 0.0 60/65(92%) 0/65(0%) Plus/Minus
Query        3  ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  197
                ISFYVLLQQCRTSAYHR SDPLISIR*QHQM* LVPHKEV*NRNYA+ LNQLPPCQSK AHPQHP
Subject   1287  ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHP  1481

Range 5: 1359 to 1481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 40/41(98%) 0/41(0%) Minus/Plus
Query        3  SNFLVRYEELHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  125
                SNFLVRYE LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN
Subject   1359  SNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  1481

Range 6: 1285 to 1326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 13/14(93%) 0/14(0%) Minus/Plus
Query      158  VGC*GCANLLWQGG  199
                VGC*GCA+LLWQGG
Subject   1285  VGC*GCADLLWQGG  1326

Range 7: 1360 to 1482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 39/41(95%) 0/41(0%) Minus/Plus
Query        2  QTSL*GTRSYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI  124
                QTSL*GTR YI*CCYLIEIKGSD R**ALVLHCCNKT*KEI
Subject   1360  QTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEI  1482

Range 8: 1287 to 1310 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 8/8(100%) 0/8(0%) Minus/Plus
Query      174  WMLRVC*F  197
                WMLRVC*F
Subject   1287  WMLRVC*F  1310

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8

Range 1: 7030 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 65/66(98%) 0/66(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  198
                LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPT DDKHWFYIAATRHRKKL
Subject   7030  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL  7227

Range 2: 7029 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 65/66(98%) 0/66(0%) Plus/Minus
Query        2  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  199
                NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN
Subject   7029  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  7226

Range 3: 7031 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 59/65(91%) 0/65(0%) Plus/Minus
Query        3  ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  197
                ISFYVLLQQCRTSAYHR SDPLISIR*QHQM* L PHKEV*N+NYA+ LNQLPPCQSKLAHPQHP
Subject   7031  ISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHP  7225

Range 4: 7030 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.9 bits(299) 0.0 61/66(92%) 0/66(0%) Plus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  198
                QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCS+S+LTRKFEI IMR  *INCLLAKAN*HTLNIQ
Subject   7030  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQ  7227

Range 5: 7103 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 39/41(95%) 0/41(0%) Minus/Plus
Query        3  SNFLVRYEELHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  125
                SNFLVR E LHLMLLPY*NQGIRPPMISTGSTLLQQDIERN
Subject   7103  SNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  7225

Range 6: 7029 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 14/14(100%) 0/14(0%) Minus/Plus
Query      158  VGC*GCANLLWQGG  199
                VGC*GCANLLWQGG
Subject   7029  VGC*GCANLLWQGG  7070

Range 7: 7104 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 38/41(93%) 0/41(0%) Minus/Plus
Query        2  QTSL*GTRSYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI  124
                QTSL*G R YI*CCYLIEIKGSD R**ALVLHCCNKT*KEI
Subject   7104  QTSL*GARCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEI  7226

Range 8: 7031 to 7054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 8/8(100%) 0/8(0%) Minus/Plus
Query      174  WMLRVC*F  197
                WMLRVC*F
Subject   7031  WMLRVC*F  7054

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 5

Range 1: 1286 to 1483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 61/66(92%) 0/66(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  198
                LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRHR KL
Subject   1286  LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKL  1483

Range 2: 1285 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 52/62(84%) 0/62(0%) Plus/Minus
Query       14  CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  199
                CLVAA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+
Subject   1285  CLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS  1470

Range 3: 1286 to 1483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 33/66(50%) 0/66(0%) Plus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  198
                QF SM CC +VEP+LI    +P  Q*  N+KC + +L  + E+GI+R C*+  LL+KAN  +LNIQ
Subject   1286  QFASMPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*VYGLLSKANEDSLNIQ  1483

Range 4: 1287 to 1481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 29/65(45%) 0/65(0%) Plus/Minus
Query        3  ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  197
                + F  LL + RT+AY     P  SI  Q QM    P +  *+RN A+LL   PP QSK   PQHP
Subject   1287  VCFDALLLRRRTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLGLRPPFQSK*GLPQHP  1481

Range 5: 1288 to 1479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 32/64(50%) 0/64(0%) Minus/Plus
Query        5  GC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRSYI*CCYLIEIKGSDPR**ALVLHCCNKT*KE  196
                GC*G  +LLW+GG   SS A FR Q +L G    I* C +IE+ G + R *ALVL   NK  K+
Subject   1288  GC*GSPHLLWKGGRRPSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVLRRSNKASKQ  1479

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8

Range 1: 7030 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 63/66(95%) 0/66(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  198
                LDVEGVLICFGKEAV+LAAAHNSDFKLPCEVRG TFDVVTLLKSRDPT DDKHWFYIAATRHRKKL
Subject   7030  LDVEGVLICFGKEAVNLAAAHNSDFKLPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKL  7227

Range 2: 7029 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 63/66(95%) 0/66(0%) Plus/Minus
Query        2  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  199
                NFFLCLVAAM*NQCLSS VGSLDFNKVTTSNV PRTSQGSLKSELCAAAK TASLPKQISTPSTSN
Subject   7029  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQGSLKSELCAAAKLTASLPKQISTPSTSN  7226

Range 3: 7030 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 57/66(86%) 0/66(0%) Plus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  198
                Q L MSCCSNVEPVLII GRI *FQ*GNNIKCS+SYLTRKFEI IMR C +NCLLAKAN*HTLNIQ
Subject   7030  QLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRKFEI*IMRSCQVNCLLAKAN*HTLNIQ  7227

Range 4: 7031 to 7222 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 54/64(84%) 0/64(0%) Plus/Minus
Query        6  SFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  197
                S YVLLQQCRTSAYH+ SD LISIR*QHQM* LVPHKEV*N NYA+L + LPPCQSKLAHPQHP
Subject   7031  SSYVLLQQCRTSAYHQRSDLLISIR*QHQM*YLVPHKEV*NLNYAQLPS*LPPCQSKLAHPQHP  7222

Range 5: 7103 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 36/41(88%) 0/41(0%) Minus/Plus
Query        3  SNFLVRYEELHLMLLPY*NQGIRPPMISTGSTLLQQDIERN  125
                SNFLVRYE LHLMLLPY*NQ IRP MISTGSTLLQQDI R+
Subject   7103  SNFLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS  7225

Range 6: 7029 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 14/14(100%) 0/14(0%) Minus/Plus
Query      158  VGC*GCANLLWQGG  199
                VGC*GCANLLWQGG
Subject   7029  VGC*GCANLLWQGG  7070

Range 7: 7104 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 35/41(85%) 0/41(0%) Minus/Plus
Query        2  QTSL*GTRSYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI  124
                QTSL*GTR YI*CCYLIEIK SD  **ALVLHCCNKT*+E+
Subject   7104  QTSL*GTRYYI*CCYLIEIKRSDL***ALVLHCCNKT*EEV  7226

Range 8: 7031 to 7054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 8/8(100%) 0/8(0%) Minus/Plus
Query      174  WMLRVC*F  197
                WMLRVC*F
Subject   7031  WMLRVC*F  7054

Grapevine rupestris stem pitting associated virus isolate SK30, complete genome

Sequence ID: KX274277.1 Length: 8724 Number of Matches: 5

Range 1: 7030 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 61/66(92%) 0/66(0%) Minus/Plus
Query        1  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAATRHRKKL  198
                LDVEGVLICFGKEAVDLA AHNSDFKLPCEVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRHR KL
Subject   7030  LDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKL  7227

Range 2: 7029 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 53/66(80%) 0/66(0%) Plus/Minus
Query        2  NFFLCLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSN  199
                N   CLVAA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+
Subject   7029  NLLRCLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS  7226

Range 3: 7030 to 7227 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 34/66(52%) 0/66(0%) Plus/Minus
Query        1  QFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSSSYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQ  198
                QF SM CC +VEP+LI    +P  Q*  N+KC + +L  + E+GI+R C*I  LL+KAN ++LNIQ
Subject   7030  QFASMPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQ  7227

Range 4: 7031 to 7225 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 30/65(46%) 0/65(0%) Plus/Minus
Query        3  ISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*LLVPHKEV*NRNYARLLNQLPPCQSKLAHPQHP  197
                I F  LL + RT+AY     P  SI  Q QM    P +  *+RN A+LL+  PP QSK   PQHP
Subject   7031  ICFDALLLRRRTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHP  7225

Range 5: 7032 to 7226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 33/65(51%) 0/65(0%) Minus/Plus
Query        2  GC*GCANLLWQGGXXXXXXXXXXFQTSL*GTRSYI*CCYLIEIKGSDPR**ALVLHCCNKT*KEI  196
                GC*G ++LLW+GG   SS A FR Q +L G    I* C +IE+ G + R *ALVL   NK  K+I
Subject   7032  GC*GSSHLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVLRRSNKASKQI  7226

Nucleotide Sequence (181 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
19
38
57
76
95
114
133
152
171
181

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 824 to 1000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 58/59(98%) 0/59(0%) Minus/Plus
Query        3  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  179
                VIIMNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP
Subject    824  VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  1000

Range 2: 822 to 965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 43/48(90%) 0/48(0%) Plus/Minus
Query       38  PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  181
                PQ*QVLLLN FYHYQE  E+QLEI*ARYK+PQTQT*TKL*LSYS**SH
Subject    822  PQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SH  965

Range 3: 940 to 1002 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.2 bits(91) 0.0 20/21(95%) 0/21(0%) Plus/Minus
Query        1  SGTPAVKAIKLSSSVTSSLIK  63
                SGTPAVKA+KLSSSVTSSLIK
Subject    940  SGTPAVKAMKLSSSVTSSLIK  1002

Range 4: 824 to 1000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 54/59(92%) 0/59(0%) Plus/Minus
Query        3  GNAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQSFN*VIHNNH  179
                GNAGRKGY+TLVLSDKFSY*T FTTTRN +N+NWKSEHAINTHKLKRRQSFN*VIHNNH
Subject    824  GNAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNH  1000

Range 5: 823 to 1002 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 54/60(90%) 0/60(0%) Minus/Plus
Query        1  CDYYE*LS*SFVYV*VCGCL*RAQIXXXXXXXXXXW*K*FNKRTCH*GREFYSLYGRRSR  180
                CDYYE*LS*SFVYV*VCG L*RAQISSC S  SW*W*K FNKRTCH*GREF+SLYGRRSR
Subject    823  CDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSR  1002

Range 6: 867 to 1001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 40/45(89%) 0/45(0%) Minus/Plus
Query        2  SLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPAFP  136
                SLWVFIACSDFQL F  FLVVVK V**ENLSLRTRV *PLRPAFP
Subject    867  SLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS*PLRPAFP  1001

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7

Range 1: 6568 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 58/59(98%) 0/59(0%) Minus/Plus
Query        3  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  179
                VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDE+FIAFTAGVP
Subject   6568  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGVP  6744

Range 2: 6566 to 6709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 46/48(96%) 0/48(0%) Plus/Minus
Query       38  PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  181
                PQ*QVLLLNYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**SH
Subject   6566  PQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SH  6709

Range 3: 6684 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.4 bits(87) 0.0 19/21(90%) 0/21(0%) Plus/Minus
Query        1  SGTPAVKAIKLSSSVTSSLIK  63
                SGTPAVKA+K SSSVTSSLIK
Subject   6684  SGTPAVKAMKFSSSVTSSLIK  6746

Range 4: 6568 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 54/58(93%) 0/58(0%) Plus/Minus
Query        6  NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQSFN*VIHNNH  179
                NAGRKGY+ LVLSDKFSY*TTFTTTRN MN+NWKSEHAINTHKLKRRQSFN*VIHNNH
Subject   6568  NAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNH  6741

Range 5: 6567 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 25/25(100%) 0/25(0%) Minus/Plus
Query      106  CDYYE*LS*SFVYV*VCGCL*RAQI  180
                CDYYE*LS*SFVYV*VCGCL*RAQI
Subject   6567  CDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 6: 6675 to 6743 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 22/23(96%) 0/23(0%) Minus/Plus
Query        4  *K*FNKRTCH*GREFYSLYGRRS  72
                *K*FNKRTCH*GREF+SLYGRRS
Subject   6675  *K*FNKRTCH*GREFHSLYGRRS  6743

Range 7: 6611 to 6742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 40/44(91%) 0/44(0%) Minus/Plus
Query        5  SLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPAF  136
                SLWVFIACSDFQL FI FLVVVKVV**ENLSLRTR+ *PLRPAF
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS*PLRPAF  6742

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7

Range 1: 6571 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 57/58(98%) 0/58(0%) Minus/Plus
Query        3  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  176
                IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDESFIAFTAGVP
Subject   6571  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVP  6744

Range 2: 6566 to 6706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 41/47(87%) 0/47(0%) Plus/Minus
Query       41  Q*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  181
                Q*  LL NYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**S+
Subject   6566  Q**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SN  6706

Range 3: 6684 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.5 bits(85) 0.0 19/21(90%) 0/21(0%) Plus/Minus
Query        1  SGTPAVKAIKLSSSVTSSLIK  63
                SGTPAVKA+KLSSSV SSLIK
Subject   6684  SGTPAVKAMKLSSSVMSSLIK  6746

Range 4: 6571 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 48/58(83%) 0/58(0%) Plus/Minus
Query        3  GNAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQSFN*VIHNN  176
                GNAGR+ Y+TLV S++ SY TTFTTTRN MN+NWKSEHAINTHKLKRRQSFN*VIHNN
Subject   6571  GNAGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  6744

Range 5: 6570 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 24/24(100%) 0/24(0%) Minus/Plus
Query      106  DYYE*LS*SFVYV*VCGCL*RAQI  177
                DYYE*LS*SFVYV*VCGCL*RAQI
Subject   6570  DYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 6: 6675 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 16/24(67%) 0/24(0%) Minus/Plus
Query        1  *K*FNKRTCH*GREFYSLYGRRSR  72
                *K*F+KR  +* REF+S +GRRSR
Subject   6675  *K*FDKRAHY*RREFHSFHGRRSR  6746

Range 7: 6611 to 6745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 36/45(80%) 0/45(0%) Minus/Plus
Query        2  SLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPAFP  136
                SLWVFIACSDFQL FI FLVVVKVV**E+  L+TRV *  RPAFP
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS*LSRPAFP  6745

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 3

Range 1: 6574 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 50/57(88%) 0/57(0%) Minus/Plus
Query        3  IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  173
                IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF+AFTAGVP
Subject   6574  IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVP  6744

Range 2: 6566 to 6691 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 24/42(57%) 0/42(0%) Plus/Minus
Query       56  LLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  181
                LLNY YH Q HY  +LEI*A  KH  T+  T L* +YS* S+
Subject   6566  LLNYSYHCQVHYV*RLEI*AH*KHL*TRRLTML*PNYS*YSN  6691

Range 3: 6684 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.5 bits(74) 0.0 17/21(81%) 0/21(0%) Plus/Minus
Query        1  SGTPAVKAIKLSSSVTSSLIK  63
                SGTPAVKA KLSSS  +SLIK
Subject   6684  SGTPAVKATKLSSSEINSLIK  6746

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3

Range 1: 6574 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 50/57(88%) 0/57(0%) Minus/Plus
Query        3  IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  173
                IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF+AFTAGVP
Subject   6574  IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVP  6744

Range 2: 6566 to 6691 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 23/42(55%) 0/42(0%) Plus/Minus
Query       56  LLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SH  181
                LLNY YH Q HY  +LEI*A  KH   +  T L* +YS* S+
Subject   6566  LLNYSYHCQVHYV*RLEI*AH*KHL*IRRLTML*PNYS*YSN  6691

Range 3: 6684 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.5 bits(74) 0.0 17/21(81%) 0/21(0%) Plus/Minus
Query        1  SGTPAVKAIKLSSSVTSSLIK  63
                SGTPAVKA KLSSS  +SLIK
Subject   6684  SGTPAVKATKLSSSEINSLIK  6746

Nucleotide Sequence (147 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
15
30
45
60
75
90
105
120
135
147

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 6535 to 6678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 45/48(94%) 0/48(0%) Plus/Minus
Query        3  FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLIYS  146
                FTTTRN MN+NWKSEHAINTH LKRRQSFN*VIHNNHTMPNT*GLIYS
Subject   6535  FTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYS  6678

Range 2: 6534 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 35/36(97%) 0/36(0%) Minus/Plus
Query       40  SYRLGLKCLAWCDYYE*LS*SFVYV*DCGCL*RAQI  147
                SYRLGLKCLAWCDYYE*LS*SFVYV* CGCL*RAQI
Subject   6534  SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 3: 6617 to 6679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/21(90%) 0/21(0%) Minus/Plus
Query        2  WVFIACSDFQLSFIVFLVVVK  64
                WVFIACSDFQL FI FLVVVK
Subject   6617  WVFIACSDFQLLFIAFLVVVK  6679

Range 4: 6535 to 6678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 47/48(98%) 0/48(0%) Minus/Plus
Query        3  AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK  146
                AID*ALSVWHGVIIMNNLVKALSTFE VGVYSVLRFPVVVHSVPGSGK
Subject   6535  AID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGK  6678

Range 5: 6536 to 6679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 45/48(94%) 0/48(0%) Plus/Minus
Query        2  FYHYQEHYERQLEI*ARYKHPQSQT*TKL*LSYS**SHHAKHLRPNL*  145
                FYHYQE YE+QLEI*ARYKHPQ+QT*TKL*LSYS**SHHAKHLRPNL*
Subject   6536  FYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*  6679

Range 6: 6534 to 6611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 26/26(100%) 0/26(0%) Plus/Minus
Query       70  SNVDKALTKLFIIITPCQTLKA*SIA  147
                SNVDKALTKLFIIITPCQTLKA*SIA
Subject   6534  SNVDKALTKLFIIITPCQTLKA*SIA  6611

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 791 to 934 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 44/48(92%) 0/48(0%) Plus/Minus
Query        3  FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLIYS  146
                FTTTRN +N+NWKSEHAINTH LKRRQSFN*VIHNNHTMPNT*GLIYS
Subject    791  FTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYS  934

Range 2: 791 to 934 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 45/48(94%) 0/48(0%) Minus/Plus
Query        3  AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK  146
                AID*ALS+WHGVIIMNNLVKALSTFE VG+YSVLRFPVVVHSVPGSGK
Subject    791  AID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGK  934

Range 3: 790 to 897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 33/36(92%) 0/36(0%) Minus/Plus
Query       40  SYRLGLKCLAWCDYYE*LS*SFVYV*DCGCL*RAQI  147
                SYRLGLK LAWCDYYE*LS*SFVYV* CG L*RAQI
Subject    790  SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQI  897

Range 4: 873 to 935 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 18/21(86%) 0/21(0%) Minus/Plus
Query        2  WVFIACSDFQLSFIVFLVVVK  64
                WVFIACSDFQL F  FLVVVK
Subject    873  WVFIACSDFQLLFTAFLVVVK  935

Range 5: 792 to 935 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 42/48(88%) 0/48(0%) Plus/Minus
Query        2  FYHYQEHYERQLEI*ARYKHPQSQT*TKL*LSYS**SHHAKHLRPNL*  145
                FYHYQE  E+QLEI*ARYK+PQ+QT*TKL*LSYS**SHHAK+LRPNL*
Subject    792  FYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*  935

Range 6: 790 to 867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 25/26(96%) 0/26(0%) Plus/Minus
Query       70  SNVDKALTKLFIIITPCQTLKA*SIA  147
                SNVDKALTKLFIIITPCQ LKA*SIA
Subject    790  SNVDKALTKLFIIITPCQILKA*SIA  867

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 6535 to 6678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 43/48(90%) 0/48(0%) Plus/Minus
Query        3  FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLIYS  146
                FTTTRN MN+NWKSEHAINTH LKRRQSFN*VIHNN  MPNT*GLIYS
Subject   6535  FTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYS  6678

Range 2: 6534 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 33/36(92%) 0/36(0%) Minus/Plus
Query       40  SYRLGLKCLAWCDYYE*LS*SFVYV*DCGCL*RAQI  147
                SYRLGLKCLA  DYYE*LS*SFVYV* CGCL*RAQI
Subject   6534  SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 3: 6617 to 6679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/21(90%) 0/21(0%) Minus/Plus
Query        2  WVFIACSDFQLSFIVFLVVVK  64
                WVFIACSDFQL FI FLVVVK
Subject   6617  WVFIACSDFQLLFIAFLVVVK  6679

Range 4: 6535 to 6678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 45/48(94%) 0/48(0%) Minus/Plus
Query        3  AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK  146
                AID*ALSVWH  IIMNNLVKALSTFE VGVYSVLRFPVVVHSVPGSGK
Subject   6535  AID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGK  6678

Range 5: 6536 to 6679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 43/48(90%) 0/48(0%) Plus/Minus
Query        2  FYHYQEHYERQLEI*ARYKHPQSQT*TKL*LSYS**SHHAKHLRPNL*  145
                FYHYQE YE+QLEI*ARYKHPQ+QT*TKL*LSYS**S++AKHLRPNL*
Subject   6536  FYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL*  6679

Range 6: 6534 to 6611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 24/26(92%) 0/26(0%) Plus/Minus
Query       70  SNVDKALTKLFIIITPCQTLKA*SIA  147
                SNVDKALTKLFIII  CQTLKA*SIA
Subject   6534  SNVDKALTKLFIII**CQTLKA*SIA  6611

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 6

Range 1: 6535 to 6678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.3 bits(206) 0.0 40/48(83%) 0/48(0%) Minus/Plus
Query        3  AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK  146
                AID*ALS+WH + IMNNLVKALSTFE VGV+SVL+FPVV+HSVPGSGK
Subject   6535  AID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVLKFPVVIHSVPGSGK  6678

Range 2: 6541 to 6678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 31/46(67%) 0/46(0%) Plus/Minus
Query        3  FTTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLI  140
                FTTTR+TMND WK +H  NT+ LK  Q FN*+IHN   MPNT*GLI
Subject   6541  FTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLI  6678

Range 3: 6542 to 6679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 31/46(67%) 0/46(0%) Plus/Minus
Query        2  FYHYQEHYERQLEI*ARYKHPQSQT*TKL*LSYS**SHHAKHLRPN  139
                FYHYQ HYE  LEI*A  KH Q+Q  T L*L+YS* S++AK+LRPN
Subject   6542  FYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPN  6679

Range 4: 6543 to 6623 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 17/27(63%) 0/27(0%) Minus/Plus
Query       58  LGLKCLAWCDYYE*LS*SFVYV*DCGC  138
                LGLK LA  +YYE* S*S V +* C C
Subject   6543  LGLKYLALFEYYE*FS*SIVNI*VCRC  6623

Range 5: 6620 to 6679 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 14/20(70%) 0/20(0%) Minus/Plus
Query        2  VFIACSDFQLSFIVFLVVVK  61
                VF  C +FQ SFIV LVVVK
Subject   6620  VFSVCLNFQ*SFIVCLVVVK  6679

Range 6: 6534 to 6611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 21/26(81%) 0/26(0%) Plus/Minus
Query       70  SNVDKALTKLFIIITPCQTLKA*SIA  147
                SNVD ALTKLFII+  CQ LKA*SIA
Subject   6534  SNVDNALTKLFIILK*CQILKA*SIA  6611

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 3

Range 1: 6535 to 6678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 38/48(79%) 0/48(0%) Minus/Plus
Query        3  AID*ALSVWHGVIIMNNLVKALSTFEIVGVYSVLRFPVVVHSVPGSGK  146
                A+D*ALS+WH + IMNNLVKALSTFE +GV+SVL+FPVV+HSVPGSGK
Subject   6535  AVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGK  6678

Range 2: 6541 to 6675 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 26/45(58%) 0/45(0%) Plus/Minus
Query        6  TTTRNTMNDNWKSEHAINTHNLKRRQSFN*VIHNNHTMPNT*GLI  140
                TT R TM ++WK +H  NT+ L+  Q FN +IHN  TMPNT*GLI
Subject   6541  TTARYTMYNDWKFKHTENTYKLEG*QCFNQIIHNTQTMPNT*GLI  6675

Range 3: 6542 to 6676 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 25/45(56%) 0/45(0%) Plus/Minus
Query        5  YHYQEHYERQLEI*ARYKHPQSQT*TKL*LSYS**SHHAKHLRPN  139
                YH Q HY  +LEI*A  KH  ++  T L* +YS* S++AK+LRPN
Subject   6542  YHCQVHYV*RLEI*AH*KHL*TRRLTML*PNYS*YSNNAKYLRPN  6676

Nucleotide Sequence (598 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
60
120
180
240
300
360
420
480
540
598

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8

Range 1: 1567 to 2145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
409.3 bits(887) 0.0 174/193(90%) 0/193(0%) Plus/Plus
Query        9  VPHAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSGSSLSEDCQGFQTVEQAECAHPPNTPNTVI  587
                V HAASSLIPLSSDPSFRPSSNEID ALS IKMA GVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGE+SFVELSCGVAKLYKSVI Q LSPDASSGLAKVY+DHSSPQLCSDFHFMSDDELPN ALAND+ SGSSLSED QGFQTVEQAECAHP N    ++
Subject   1567  VLHAASSLIPLSSDPSFRPSSNEIDFALSGIKMALGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGETSFVELSCGVAKLYKSVILQVLSPDASSGLAKVYIDHSSPQLCSDFHFMSDDELPNSALANDVISGSSLSEDRQGFQTVEQAECAHPANDAPCIV  2145

Range 2: 1566 to 2126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
381.8 bits(827) 0.0 174/187(93%) 0/187(0%) Minus/Minus
Query        8  FGGWAHSACSTVWXXXXXXXXXXXDVISLARAGFGNSSSDMK*KSEQSCGEE*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAACGT  568
                F GWAHSACSTVWNP*+SSDNDDPD+ SLARA FGNSSSDMK*KSEQSCGEE*S YTLAKPDEASGDK C ITDL*SFATPQESSTKE SPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATP+AILI DRA+SISFEDGLKDGSLDNGIRDEAAC T
Subject   1566  FAGWAHSACSTVWNP*RSSDNDDPDITSLARAEFGNSSSDMK*KSEQSCGEE*SIYTLAKPDEASGDKTCRITDL*SFATPQESSTKEVSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPKAILIPDRAKSISFEDGLKDGSLDNGIRDEAACST  2126

Range 3: 1571 to 2125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.0 bits(740) 0.0 168/185(91%) 0/185(0%) Minus/Minus
Query       13  LGDGHIQLALRSGILDSLLIMMIQMSYHWLEQDLATHHLT*SENQNKAAGKSDQHIL*LSLMKHLETKLAE*LTCRVLQPXXXXXXXXXXXISKISN*LSA*EETTEGHKNGRT**EPSNV*QALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*KTGH*TMGSEMRLHV  567
                L DGHIQLAL+ GILD LLIMMIQ+ +H LEQ+LATHHLT*SENQNKAAGKSDQ+IL*LSLMKHLETK AE*LTCRVLQPHRRAQQ+R HHISKISN*LSA*EETTEGHKNGRT**EP NV* ALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*K GH* MGSEMRLHV
Subject   1571  LRDGHIQLALQFGILDGLLIMMIQILHH*LEQNLATHHLT*SENQNKAAGKSDQYIL*LSLMKHLETKPAE*LTCRVLQPHRRAQQKRFHHISKISN*LSA*EETTEGHKNGRT**EPLNV*PALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*KMGH*IMGSEMRLHV  2125

Range 4: 1796 to 2125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.6 bits(473) 0.0 98/110(89%) 0/110(0%) Plus/Plus
Query      238  FVAFSGFFLSRELI*NF*NVVNPPLLSSPVGLQNSTSQLFSKLCLQMLHQA*LKYMLITLPRSFVLIFTSCQMMSCQILL*PMI*HLDHHYQKTVKDSRP*SKLNVPIPQ  567
                FVAFSGFFLSRE I*NF*NVV P LLSSPVGLQNSTSQLF + CLQMLHQA*LKY+LITLPRSFVLIFTSCQMMSCQILL* M+*+LDHHYQKTVKDS+ *SKLNVPIPQ
Subject   1796  FVAFSGFFLSRESI*NF*NVVKPLLLSSPVGLQNSTSQLFCRFCLQMLHQA*LKYILITLPRSFVLIFTSCQMMSCQILL*LMM*YLDHHYQKTVKDSKL*SKLNVPIPQ  2125

Range 5: 1571 to 1756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 57/62(92%) 0/62(0%) Plus/Plus
Query       13  HMQPHL*SHCLVTRLLGHLQMR*ILLCQRLRWPRVWLDSQIFSDF*LMIFS*MSCKIHTGQG  198
                +MQPHL*SH LVT LLGHLQMR*ILLCQ LRWP VWLDSQIFSDF*LMIFS*MSCKIHTGQG
Subject   1571  YMQPHL*SHYLVTHLLGHLQMR*ILLCQGLRWPWVWLDSQIFSDF*LMIFS*MSCKIHTGQG  1756

Range 6: 1744 to 2127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.3 bits(540) 0.0 116/128(91%) 0/128(0%) Minus/Minus
Query      186  VWGMGTFSLLYGLESLTVF****SRCHIIG*SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSKP*PV  569
                + GMGTFSLLY LESLTVF****SR +II *SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQ+L NN*LVEFCNPTGELNK GFTTFQKFQI+SLLKKKPLKATKMEELSESL MFS+P*PV
Subject   1744  ICGMGTFSLLYSLESLTVF****SRYYIIS*SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQNLQNN*LVEFCNPTGELNKRGFTTFQKFQIDSLLKKKPLKATKMEELSESL*MFSQP*PV  2127

Range 7: 1573 to 1704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 39/44(89%) 0/44(0%) Minus/Minus
Query       15  KSEKI*LSSHTRGHLNL*QSRIYLI*RWPKRRVTRQWDQR*GCM  146
                KSEKI*LSSHT+GHLN *QS+IYLI*RWPKR VTR WDQR*GCM
Subject   1573  KSEKI*LSSHTQGHLNP*QSKIYLI*RWPKRWVTR*WDQR*GCM  1704

Range 8: 1572 to 2039 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
305.8 bits(661) 0.0 146/156(94%) 0/156(0%) Plus/Plus
Query       14  TCSLISDPIV**PVF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAC*TFEGSH*VLPFLWPXXXXXXAES*FEIFEMW*ILLC*ALLWGCKTLQVSYSASFVSRCFIRLS*SIC*SLFPAALF*FSLHVR**VAKSCSS  481
                TCSLISDPI+**P+F*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKA *TF+GSH*VLPFLWPSVVSS*AES FEIFEMW* L C*ALLWGCKTLQVSYSA FVSRCFIRLS*SI *SLFPAALF*FSLHVR**VAK CSS
Subject   1572  TCSLISDPII**PIF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAG*TFKGSH*VLPFLWPSVVSS*AESQFEIFEMW*NLFC*ALLWGCKTLQVSYSAGFVSRCFIRLS*SIY*SLFPAALF*FSLHVR**VAKFCSS  2039

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8

Range 1: 1567 to 2127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
359.8 bits(779) 0.0 154/187(82%) 0/187(0%) Plus/Plus
Query        9  VPHAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSGSSLSEDCQGFQTVEQAECAHPPN  569
                V HAA SL PLSSDPSFRPSSNEI+  LS IKMA GVAGQS LFRFLIDDIF+NEL+ SYRSRLAKHL+ALTKFFHFCGLQWFLLKQR+NLKFLK  E+SFVELSCGVAKLYKSVI Q  SP+A SGLA+VYVDHSS QLCS  HFMSDDELPNPALA+++TS +SLSEDCQGFQTVEQA CAHP N
Subject   1567  VLHAALSLFPLSSDPSFRPSSNEINFVLSGIKMALGVAGQSKLFRFLIDDIFINELKLSYRSRLAKHLRALTKFFHFCGLQWFLLKQRINLKFLKGSETSFVELSCGVAKLYKSVILQVSSPNALSGLARVYVDHSSSQLCSGSHFMSDDELPNPALADNITSEASLSEDCQGFQTVEQAACAHPIN  2127

Range 2: 1566 to 2126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
322.3 bits(697) 0.0 151/187(81%) 0/187(0%) Minus/Minus
Query        8  FGGWAHSACSTVWXXXXXXXXXXXDVISLARAGFGNSSSDMK*KSEQSCGEE*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAACGT  568
                F GWAH+ACSTVWNP*QSSDND  +VI  ARAGFGNSSSDMK + EQSC EE*STYTLA+PD+A GD+ C ITDL*SFATPQESSTKE S  FKNFK  LCLRRNH RPQKWKNLVRA KCLASLDLYE  SSF KISSIRNLK FDCPATP+AILI DR + ISFEDGLKDGSLDNG RD+AAC T
Subject   1566  FMGWAHAACSTVWNP*QSSDNDASEVILSARAGFGNSSSDMKWEPEQSCEEE*STYTLARPDKAFGDETCKITDL*SFATPQESSTKEVSLPFKNFKFILCLRRNHWRPQKWKNLVRALKCLASLDLYESFSSFMKISSIRNLKSFDCPATPKAILIPDRTKFISFEDGLKDGSLDNGNRDKAACST  2126

Range 3: 1571 to 2125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
284.2 bits(614) 0.0 142/185(77%) 0/185(0%) Minus/Minus
Query       13  LGDGHIQLALRSGILDSLLIMMIQMSYHWLEQDLATHHLT*SENQNKAAGKSDQHIL*LSLMKHLETKLAE*LTCRVLQPXXXXXXXXXXXISKISN*LSA*EETTEGHKNGRT**EPSNV*QALTCMNFAAHLGKYHQSEI*KDLTVQPHPRPS*SLTEQNLSHLKMA*KTGH*TMGSEMRLHV  567
                L DGH++LAL+ GILDSLLIM  Q  Y+ LEQDLATHHLT*S +QNKAA KSDQHIL*L L+KHLETKLA+*LTC+VLQPH+R  QRR H++SKISN  S *EETT GHKNGRT** P N *QALTCM  +AHL KYHQSEI*K LTVQPHPRPS*SLTEQNL HLKMA*K   *TM +E+RLHV
Subject   1571  LWDGHMRLALQFGILDSLLIMTPQK*YYQLEQDLATHHLT*SGSQNKAARKSDQHIL*LGLIKHLETKLAK*LTCKVLQPHKRVLQRRFHYLSKISNLFSV*EETTGGHKNGRT**GPLNA*QALTCMKVSAHL*KYHQSEI*KVLTVQPHPRPS*SLTEQNLFHLKMA*KMDR*TMETEIRLHV  2125

Range 4: 1744 to 2127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 101/128(79%) 0/128(0%) Minus/Minus
Query      186  VWGMGTFSLLYGLESLTVF****SRCHIIG*SRIWQLII*HEVKIRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSKP*PV  569
                ++GMGT  LLY LESLTVF***  R +II *SRIWQLII*HEV  RTKLRGRVINIY S*A**SIWR++L NN*LV+FCNPT E  KGGFTTFQKFQI SL KKKPL+ATKMEELSE   M SKP*PV
Subject   1744  IYGMGTCGLLYSLESLTVF***RLRSNIIS*SRIWQLII*HEVGARTKLRGRVINIYSS*A**SIWRRNLQNN*LVKFCNPTREFYKGGFTTFQKFQIYSLFKKKPLEATKMEELSEGP*MLSKP*PV  2127

Range 5: 1573 to 1704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 34/44(77%) 0/44(0%) Minus/Minus
Query       15  KSEKI*LSSHTRGHLNL*QSRIYLI*RWPKRRVTRQWDQR*GCM  146
                KSEK *LSSHT+GHLN *Q++IY I*RWPKR + RQW QR*GCM
Subject   1573  KSEKF*LSSHTQGHLNP*QNKIYFI*RWPKRWIARQWKQR*GCM  1704

Range 6: 1796 to 2122 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 83/109(76%) 0/109(0%) Plus/Plus
Query      238  FVAFSGFFLSRELI*NF*NVVNPPLLSSPVGLQNSTSQLFSKLCLQMLHQA*LKYMLITLPRSFVLIFTSCQMMSCQILL*PMI*HLDHHYQKTVKDSRP*SKLNVPIP  564
                FVA SGFFL+RE I*NF* VV PPL +S VGLQN TSQLF K  LQML+QA*L+YMLITLPRSFVL  TSCQMMSCQILL* +I  L  HYQKTVKDS+ *SK +VPIP
Subject   1796  FVASSGFFLNRE*I*NF*KVVKPPL*NSLVGLQNFTSQLFCKFRLQMLYQA*LEYMLITLPRSFVLAPTSCQMMSCQILL*LIILLLRRHYQKTVKDSKL*SKPHVPIP  2122

Range 7: 1571 to 1756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 47/62(76%) 0/62(0%) Plus/Plus
Query       13  HMQPHL*SHCLVTRLLGHLQMR*ILLCQRLRWPRVWLDSQIFSDF*LMIFS*MSCKIHTGQG  198
                +MQP+L  HCL   LLGHLQM+*IL CQ LRWP VWLDSQ FSDF*LMIFS*MS   HTGQG
Subject   1571  YMQPYLCFHCLAIHLLGHLQMK*ILFCQGLRWPWVWLDSQNFSDF*LMIFS*MS*NFHTGQG  1756

Range 8: 1572 to 2048 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
256.3 bits(553) 0.0 128/159(81%) 0/159(0%) Plus/Plus
Query       14  TCSLISDPIV**PVF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAC*TFEGSH*VLPFLWPXXXXXXAES*FEIFEMW*ILLC*ALLWGCKTLQVSYSASFVSRCFIRLS*SIC*SLFPAALF*FSLHVR**VAKSCSSQ*Y  490
                TCSLIS  IV*  +F*AIFK*++FCSVRD*DGLGCGWTVK+FQISD**YF K*A  FIQVKAC* F+G H*VLPFLWP VVSS* E+ FEIFE  * LLC  LLWGCKTLQVSY ASFVS+CFIR S*SIC*SLF AALF   LHVR**VAKSCSS *Y
Subject   1572  TCSLISVSIV*RSIF*AIFK*NKFCSVRD*DGLGCGWTVKTFQISD**YFHK*AETFIQVKAC*AFKGPH*VLPFLWPPVVSS*TENKFEIFER**NLLCRTLLWGCKTLQVSYFASFVSKCFIRPS*SIC*SLFLAALFWLPLHVR**VAKSCSS**Y  2048

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 5

Range 1: 1573 to 2058 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
206.8 bits(445) 0.0 87/162(54%) 0/162(0%) Plus/Plus
Query       15  HAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDELPNPALANDMTSG  500
                HA  SLIPL +DP F+PS  EIDSALS +K A  + GQS LFRF++DD  L  +Q++YR RL+ H+KALT+FFH CGLQWFLL +R NL+FL   +SSF +LSC VAK+Y  V+ Q   P+ASSGL +VY+DHS     S+ HF +  E  +   A ++ SG
Subject   1573  HAVLSLIPLPNDPKFKPSGREIDSALSRVKAALAITGQSKLFRFVVDDTLLRSVQSAYRFRLSSHIKALTEFFHICGLQWFLLCRRANLRFLCDRKSSFADLSCQVAKIYNLVVAQVTLPNASSGLIQVYIDHSRSNKNSNPHFAATGEARDSIEAVNLDSG  2058

Range 2: 1572 to 1973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 73/134(54%) 0/134(0%) Minus/Minus
Query       14  E*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC  415
                E*S  T  KPD+A G+  C  T L* FAT QE S KED    +N +L L  RRNH*RPQ WKN VRAF C  SL  Y  C+  R++SS  NLK  DCP   +A L  D AESIS  +GL  GSL NGI D  AC
Subject   1572  E*SM*T*IKPDDALGNVTCATTKL*IFAT*QERSAKEDFRSHRNLRLALRQRRNH*RPQMWKNSVRAFMCEESLKRYALCTLRRRVSSTTNLKSLDCPVIAKAALTRDSAESISLPEGLNLGSLGNGINDNTAC  1973

Range 3: 1588 to 2004 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 49/139(35%) 0/139(0%) Minus/Minus
Query       30  EVKIRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSKP*PVXXXXXXXXXXXXQKSEKI*LSSHTRGHLNL*QSRIYLI*RWPKRRVTRQWDQ  446
                +V I   +R  VIN+  +  ** I   +L  N ++   + TG++ KGG +  QK +I S  +KKPLK T +E+ SE L +  +P  +  L    + +I+ K EK+ LS + +  LN  Q  IY      K R+ R WDQ
Subject   1588  KVWIGILVRAGVINVNLNQT**CIR*CNLCYNQVINLRHLTGKVGKGGLSVTQKPEIGSPAEKKPLKTTNVEKFSEGLYV*GEPKTICTLHATQKGVIHHKPEKLGLSCNCQSRLNARQC*IYFSAGRLKFRIIR*WDQ  2004

Range 4: 1560 to 1832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 37/91(41%) 0/91(0%) Plus/Plus
Query        2  QVGPTCSLISDPIV**PVF*AIFK*DRFCSVRD*DGLGCGWTVKSFQISD**YFPK*AAKFIQVKAC*TFEGSH*VLPFLWPXXXXXXAES  274
                Q    C ++ DPI **   *A  + +RF +V  * G G   T+++FQ+   *+   * A+ I   A  T +G H*+ P LW SVVSS  ES
Subject   1560  QSNTACGVVIDPIT**S*I*AFRQRNRFSTVSR*GGFGNYRTIQAFQVCGG*HPSA*RAECISF*ALLTHKGPH*IFPHLWSSVVSSLPES  1832

Range 5: 1860 to 1973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 14/38(37%) 0/38(0%) Plus/Plus
Query      302  ILLC*ALLWGCKTLQVSYSASFVSRCFIRLS*SIC*SL  415
                +LLC   L G + L +  S  +++ C IR   S+ *SL
Subject   1860  VLLCRPFLSGGEDL*LGCSTGYIT*CIIRFDSSLH*SL  1973

Rupestris stem pitting associated virus isolate RSPaV PN, complete genome

Sequence ID: AY368172.2 Length: 8743 Number of Matches: 4

Range 1: 1579 to 2019 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 82/147(56%) 0/147(0%) Plus/Plus
Query       21  ASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQLCSDFHFMSDDE  461
                A SLIPL +DP+FRP+S EI+ +L  I+MA     QS LF FL++   ++E+Q  Y+++LA+HLKALT FFHFCGLQWFLL +R NLKFL   +SSF +L C VAKLY  VI QA++P A SGL KVYV  S+PQ  S+   + D E
Subject   1579  ALSLIPLPNDPAFRPTSEEINFSLLSIRMALESTRQSKLFGFLVNSALISEMQKKYKTKLAQHLKALTWFFHFCGLQWFLLSKRANLKFLGECKSSFADLDCNVAKLYNLVITQAIAPRALSGLIKVYVGSSNPQQKSNPQTIFDGE  2019

Range 2: 1572 to 1979 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 70/136(51%) 0/136(0%) Minus/Minus
Query       14  GEE*STYTLAKPDEASGDKAC*ITDL*SFATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC  421
                G E  T TL KPD+A G  A  IT L*S AT Q  S KED    KN +L L L RNH*RPQK KN V AFKC AS  LY FC S  +    +  K FDC     AIL+  R + IS E GL  GS  +GI+D A C
Subject   1572  GLELPT*TLIKPDKALGAIA*VITKL*SLATLQSRSAKEDLHSPKNLRLALLLSRNH*RPQK*KNQVSAFKCWASFVLYFFCISLMRALFTKKPKSFDCLVDSRAILMLKREKLISSEVGLNAGSFGSGIKDRATC  1979

Range 3: 1756 to 1995 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 33/80(41%) 0/80(0%) Minus/Minus
Query      198  IRTKLRGRVINIYFS*A**SIWRQSLLNN*LVEFCNPTGELNKGGFTTFQKFQINSLLKKKPLKATKMEELSESLQMFSK  437
                +R  L  R  NI F+* **S  R SL  N +VEF +   ++ KGG T  QKF+++SL  ++PLK  +M++ SE  Q+  +
Subject   1756  VRFLLGIRTANIDFN*T**SSRRNSLSYNQIVEFGDVAIKICKGGLTFTQKFEVSSLT*QEPLKTAEMKKPSECFQVLGE  1995

Range 4: 1588 to 1704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 12/39(31%) 0/39(0%) Minus/Minus
Query       30  KSEKI*LSSHTRGHLNL*QSRIYLI*RWPKRRVTRQWDQ  146
                ++++ *L      H   *+ +I L+  WP+ R+  QW+Q
Subject   1588  EAKEF*LPRGLESHPYA*EGKINLLRGWPECRIIWQWNQ  1704

Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome

Sequence ID: KX274274.1 Length: 8725 Number of Matches: 2

Range 1: 1573 to 1983 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.3 bits(409) 0.0 76/137(55%) 0/137(0%) Plus/Plus
Query       15  HAASSLIPLSSDPSFRPSSNEIDSALSEIKMASGVAGQSNLFRFLIDDIFLNELQNSYRSRLAKHLKALTKFFHFCGLQWFLLKQRVNLKFLKCGESSFVELSCGVAKLYKSVIQQALSPDASSGLAKVYVDHSSPQ  425
                H A SL+PLS+DP F+ +  E+DSALS ++MA G+ GQS LF FL++D  +NE+Q  Y+ RLAKHLK+LT +FHFCG QWFLL +RVNLKFL   +SSF +L C VA++Y+ V  Q  +P    GL KVY  +S+PQ
Subject   1573  HVALSLVPLSNDPFFKLTPREVDSALSSVRMALGITGQSKLFGFLVNDTLINEMQRRYKLRLAKHLKSLTWYFHFCGCQWFLLNRRVNLKFLGDRKSSFADLDCNVAQIYRLVSAQVTAPGVLLGLTKVYAHYSNPQ  1983

Range 2: 1572 to 1892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 55/107(51%) 0/107(0%) Minus/Minus
Query       14  ATPQESSTKEDSPHFKNFKLTLCLRRNH*RPQKWKNLVRAFKCLASLDLYEFCSSFRKISSIRNLKRFDCPATPEAILISDRAESISFEDGLKDGSLDNGIRDEAAC  334
                AT Q  S KED    +N +LTL  +RNH*+PQKWK  V  FKCLASL+LY  C S  ++S  +  K  DCP  P AIL  +RAES S    LK GS D G +D A C
Subject   1572  ATLQSRSAKEDFRSPRNLRLTLRFKRNH*QPQKWKYQVSDFKCLASLNLYLLCISLMRVSFTKKPKSLDCPVIPRAILTLERAESTSLGVSLKKGSFDKGTKDRATC  1892

Nucleotide Sequence (120 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
120

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 1265 to 1381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 39/39(100%) 0/39(0%) Plus/Plus
Query        2  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR  118
                ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR
Subject   1265  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR  1381

Range 2: 1264 to 1383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.6 bits(197) 0.0 40/40(100%) 0/40(0%) Minus/Minus
Query        1  PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  120
                PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI
Subject   1264  PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  1383

Range 3: 1266 to 1382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 35/39(90%) 0/39(0%) Minus/Minus
Query        3  LVPHKEV*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  119
                LVPHKEV*NRNYA+ LNQLPPCQSK AHPQHPTQMA+L*
Subject   1266  LVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHPTQMASL*  1382

Range 4: 1265 to 1381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 35/39(90%) 0/39(0%) Minus/Minus
Query        2  SYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  118
                SYLTRKFEIGIMR  *INCLLAKAN HTLNIQLKWR CN
Subject   1265  SYLTRKFEIGIMRSR*INCLLAKANQHTLNIQLKWRACN  1381

Range 5: 1264 to 1326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 19/21(90%) 0/21(0%) Plus/Plus
Query        1  DYRFAI*VGC*GCANLLWQGG  63
                DYR AI*VGC*GCA+LLWQGG
Subject   1264  DYRLAI*VGC*GCADLLWQGG  1326

Range 6: 1359 to 1382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
21.7 bits(41) 0.0 8/8(100%) 0/8(0%) Plus/Plus
Query       96  SNFLVRYE  119
                SNFLVRYE
Subject   1359  SNFLVRYE  1382

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5

Range 1: 7009 to 7125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 39/39(100%) 0/39(0%) Plus/Plus
Query        2  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR  118
                ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR
Subject   7009  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR  7125

Range 2: 7010 to 7126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 35/39(90%) 0/39(0%) Minus/Minus
Query        3  LVPHKEV*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  119
                L PHKEV*N+NYA+ LNQLPPCQSKLAHPQHPTQMANL*
Subject   7010  LAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHPTQMANL*  7126

Range 3: 7008 to 7127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.6 bits(197) 0.0 40/40(100%) 0/40(0%) Minus/Minus
Query        1  PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  120
                PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI
Subject   7008  PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  7127

Range 4: 7009 to 7125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 35/39(90%) 0/39(0%) Minus/Minus
Query        2  SYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  118
                S+LTRKFEI IMR  *INCLLAKAN*HTLNIQLKWRTCN
Subject   7009  SHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQLKWRTCN  7125

Range 5: 7008 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 21/21(100%) 0/21(0%) Plus/Plus
Query        1  DYRFAI*VGC*GCANLLWQGG  63
                DYRFAI*VGC*GCANLLWQGG
Subject   7008  DYRFAI*VGC*GCANLLWQGG  7070

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 5

Range 1: 7009 to 7125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 38/39(97%) 0/39(0%) Plus/Plus
Query        2  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR  118
                ITGSPFELDVEGVLICFGKEAV+LAAAHNSDFKLPCEVR
Subject   7009  ITGSPFELDVEGVLICFGKEAVNLAAAHNSDFKLPCEVR  7125

Range 2: 7008 to 7127 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.0 bits(191) 0.0 39/40(98%) 0/40(0%) Minus/Minus
Query        1  PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI  120
                PRTSQGSLKSELCAAAK TASLPKQISTPSTSNSNGEPVI
Subject   7008  PRTSQGSLKSELCAAAKLTASLPKQISTPSTSNSNGEPVI  7127

Range 3: 7009 to 7125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 34/39(87%) 0/39(0%) Minus/Minus
Query        2  SYLTRKFEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  118
                SYLTRKFEI IMR C +NCLLAKAN*HTLNIQLKW TCN
Subject   7009  SYLTRKFEI*IMRSCQVNCLLAKAN*HTLNIQLKW*TCN  7125

Range 4: 7010 to 7126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 33/39(85%) 0/39(0%) Minus/Minus
Query        3  LVPHKEV*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  119
                LVPHKEV*N NYA+L + LPPCQSKLAHPQHPTQM NL*
Subject   7010  LVPHKEV*NLNYAQLPS*LPPCQSKLAHPQHPTQMVNL*  7126

Range 5: 7008 to 7070 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 20/21(95%) 0/21(0%) Plus/Plus
Query        1  DYRFAI*VGC*GCANLLWQGG  63
                DYRF I*VGC*GCANLLWQGG
Subject   7008  DYRFTI*VGC*GCANLLWQGG  7070

Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome

Sequence ID: KX958435.1 Length: 8743 Number of Matches: 2

Range 1: 7010 to 7126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 36/39(92%) 0/39(0%) Plus/Plus
Query        2  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR  118
                + GSPFELDVEGVLICFGKEAVDLA AHNSDFKLPCEVR
Subject   7010  VVGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVR  7126

Range 2: 7015 to 7128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.0 bits(156) 0.0 30/38(79%) 0/38(0%) Minus/Minus
Query        7  PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEP  120
                PRTSQG+LKSELCA A+STAS PKQI TPSTS+S G+P
Subject   7015  PRTSQGNLKSELCATARSTASFPKQIRTPSTSSSKGDP  7128

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 4

Range 1: 1265 to 1381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 36/39(92%) 0/39(0%) Plus/Plus
Query        2  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVR  118
                + GSPFELDVEGVLICFGKEAVDLA AHNSDFKLPCEVR
Subject   1265  VIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVR  1381

Range 2: 1267 to 1383 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.6 bits(162) 0.0 30/39(77%) 0/39(0%) Minus/Minus
Query        4  PRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPV  120
                PRTSQG+LKSELCA A+STAS PKQ+ TPSTS+SNG+P+
Subject   1267  PRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPI  1383

Range 3: 1265 to 1378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 20/38(53%) 0/38(0%) Minus/Minus
Query        2  YLTRKFEIGIMRGC*INCLLAKAN*HTLNIQLKWRTCN  115
                +L  + E+GI+R C*+  LL+KAN  +LNIQ KWR  N
Subject   1265  HLAGQLEVGIVRNC*VYGLLSKANEDSLNIQFKWRPYN  1378

Range 4: 1266 to 1376 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 21/37(57%) 0/37(0%) Minus/Minus
Query        3  PHKEV*NRNYARLLNQLPPCQSKLAHPQHPTQMANL*  113
                P +  *+RN A+LL   PP QSK   PQHP QMA L*
Subject   1266  PRRAT*SRNCAQLLGLRPPFQSK*GLPQHPVQMATL*  1376

Nucleotide Sequence (133 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
14
28
42
56
70
84
98
112
126
133

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 905 to 1036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.6 bits(223) 0.0 44/44(100%) 0/44(0%) Minus/Plus
Query        1  VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP  132
                VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP
Subject    905  VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP  1036

Range 2: 944 to 1036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.2 bits(157) 0.0 29/31(94%) 0/31(0%) Plus/Minus
Query        1  WLDVPPREVGSVGNAGRKGYKTLVLSDKFSY  93
                WL+VPPREVGSVGNAGRKGY+TLVLSDKFSY
Subject    944  WLNVPPREVGSVGNAGRKGYETLVLSDKFSY  1036

Range 3: 906 to 965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 16/20(80%) 0/20(0%) Plus/Minus
Query       72  PQ*QVLLLNYFYHYQEHYER  131
                PQ*QVLLLN FYHYQE  E+
Subject    906  PQ*QVLLLNCFYHYQERCEQ  965

Range 4: 904 to 1029 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 37/42(88%) 0/42(0%) Minus/Plus
Query        8  CRS*CSW*W*K*FNKRTCH*GREFYSLYGRRSRHSQPLWEVH  133
                C S  SW*W*K FNKRTCH*GREF+SLYGRRSRHSQPLWEVH
Subject    904  CCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSRHSQPLWEVH  1029

Range 5: 940 to 1035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.4 bits(148) 0.0 31/32(97%) 0/32(0%) Plus/Minus
Query        2  GLMYLPERLGVSGTPAVKAIKLSSSVTSSLIK  97
                GLMYLPERLGVSGTPAVKA+KLSSSVTSSLIK
Subject    940  GLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK  1035

Range 6: 909 to 1034 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 37/42(88%) 0/42(0%) Minus/Plus
Query        3  FIVFLXXXXXXX*ENLSLRTRVL*PLRPAFPTLPTSLGGTSS  128
                F  FLVVVK V**ENLSLRTRV *PLRPAFPTLPTSLGGT S
Subject    909  FTAFLVVVKAV**ENLSLRTRVS*PLRPAFPTLPTSLGGTLS  1034

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 6649 to 6780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.1 bits(222) 0.0 43/44(98%) 0/44(0%) Minus/Plus
Query        1  VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP  132
                VVHSVPGSGKSSLIREL+TEDESFIAFTAGVPDTPNLSGRYIKP
Subject   6649  VVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKP  6780

Range 2: 6684 to 6779 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.9 bits(138) 0.0 29/32(91%) 0/32(0%) Plus/Minus
Query        2  GLMYLPERLGVSGTPAVKAIKLSSSVTSSLIK  97
                GLMYLPER GVSGTPAVKA+KLSSSV SSLIK
Subject   6684  GLMYLPERFGVSGTPAVKAMKLSSSVMSSLIK  6779

Range 3: 6650 to 6706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 14/19(74%) 0/19(0%) Plus/Minus
Query       75  Q*QVLLLNYFYHYQEHYER  131
                Q*  LL NYFYHYQE YE+
Subject   6650  Q**ALLSNYFYHYQERYEQ  6706

Range 4: 6648 to 6779 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 32/44(73%) 0/44(0%) Minus/Plus
Query        2  CRS*CSW*W*K*FNKRTCH*GREFYSLYGRRSRHSQPLWEVHQA  133
                C S* SW*W*K*F+KR  +* REF+S +GRRSRHS+P WEVHQA
Subject   6648  CCS*RSW*W*K*FDKRAHY*RREFHSFHGRRSRHSKPFWEVHQA  6779

Range 5: 6649 to 6780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(123) 0.0 32/44(73%) 0/44(0%) Plus/Minus
Query        1  WLDVPPREVGSVGNAGRKGYKTLVLSDKFSYXXXXXXXXXXMND  132
                WLDVPPR+V SVGNAGR+ Y+TLV S++ SY TTFTTTRN MN+
Subject   6649  WLDVPPRKVWSVGNAGRESYETLVFSNELSYQTTFTTTRNAMNN  6780

Range 6: 6653 to 6778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 32/42(76%) 0/42(0%) Minus/Plus
Query        3  FIVFLXXXXXXX*ENLSLRTRVL*PLRPAFPTLPTSLGGTSS  128
                FI FLVVVKVV**E+  L+TRV *  RPAFPTL T LGGTSS
Subject   6653  FIAFLVVVKVV**ESSLLKTRVS*LSRPAFPTLQTFLGGTSS  6778

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 6649 to 6780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.2 bits(220) 0.0 43/44(98%) 0/44(0%) Minus/Plus
Query        1  VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP  132
                VVHSVPGSGKSSLIRELVTEDE+FIAFTAGVPDTPNLSGRYIKP
Subject   6649  VVHSVPGSGKSSLIRELVTEDENFIAFTAGVPDTPNLSGRYIKP  6780

Range 2: 6648 to 6779 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 39/44(89%) 0/44(0%) Minus/Plus
Query        2  CRS*CSW*W*K*FNKRTCH*GREFYSLYGRRSRHSQPLWEVHQA  133
                C S* SW*W*K*FNKRTCH*GREF+SLYGRRS H+QPLWEVHQA
Subject   6648  CCS*RSW*W*K*FNKRTCH*GREFHSLYGRRS*HTQPLWEVHQA  6779

Range 3: 6684 to 6779 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.6 bits(144) 0.0 30/32(94%) 0/32(0%) Plus/Minus
Query        2  GLMYLPERLGVSGTPAVKAIKLSSSVTSSLIK  97
                GLMYLPERLGVSGTPAVKA+K SSSVTSSLIK
Subject   6684  GLMYLPERLGVSGTPAVKAMKFSSSVTSSLIK  6779

Range 4: 6650 to 6709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 18/20(90%) 0/20(0%) Plus/Minus
Query       72  PQ*QVLLLNYFYHYQEHYER  131
                PQ*QVLLLNYFYHYQE YE+
Subject   6650  PQ*QVLLLNYFYHYQERYEQ  6709

Range 5: 6688 to 6780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.9 bits(143) 0.0 27/31(87%) 0/31(0%) Plus/Minus
Query        1  WLDVPPREVGSVGNAGRKGYKTLVLSDKFSY  93
                WLDVPPREVG V NAGRKGY+ LVLSDKFSY
Subject   6688  WLDVPPREVGCVRNAGRKGYEILVLSDKFSY  6780

Range 6: 6653 to 6778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 37/42(88%) 0/42(0%) Minus/Plus
Query        3  FIVFLXXXXXXX*ENLSLRTRVL*PLRPAFPTLPTSLGGTSS  128
                FI FLVVVKVV**ENLSLRTR+ *PLRPAF T PTSLGGTSS
Subject   6653  FIAFLVVVKVV**ENLSLRTRIS*PLRPAFLTHPTSLGGTSS  6778

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 2

Range 1: 905 to 1036 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(210) 0.0 39/44(89%) 0/44(0%) Minus/Plus
Query        1  VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP  132
                VVHSVPGSGKSSLIREL++EDESF+AFTAGVPD+PNL+GRYIKP
Subject    905  VVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKP  1036

Range 2: 940 to 1035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(109) 0.0 24/32(75%) 0/32(0%) Plus/Minus
Query        2  GLMYLPERLGVSGTPAVKAIKLSSSVTSSLIK  97
                GLMYLP R G+SGTPAVKA K SSS  SSLI+
Subject    940  GLMYLPVRFGLSGTPAVKATKDSSSEISSLIR  1035

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 2

Range 1: 6649 to 6780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(210) 0.0 39/44(89%) 0/44(0%) Minus/Plus
Query        1  VVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKP  132
                VVHSVPGSGKSSLIREL++EDESF+AFTAGVPD+PNL+GRYIKP
Subject   6649  VVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKP  6780

Range 2: 6684 to 6779 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(109) 0.0 24/32(75%) 0/32(0%) Plus/Minus
Query        2  GLMYLPERLGVSGTPAVKAIKLSSSVTSSLIK  97
                GLMYLP R G+SGTPAVKA K SSS  SSLI+
Subject   6684  GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  6779

Nucleotide Sequence (103 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
11
22
33
44
55
66
77
88
99
103

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 3

Range 1: 890 to 988 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 33/33(100%) 0/33(0%) Plus/Plus
Query        1  LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT  99
                LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT
Subject    890  LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT  988

Range 2: 894 to 992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 28/33(85%) 0/33(0%) Minus/Minus
Query        5  RS*RL*NSRPQ*QVLLLNYFYHYQEHYERQLEI  103
                R *RL*NSRPQ*QVLLLN FYHYQE  E+QLEI
Subject    894  RP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI  992

Range 3: 890 to 991 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.2 bits(105) 0.0 29/34(85%) 0/34(0%) Minus/Minus
Query        1  GRKGYKTLVLSDKFSYXXXXXXXXXTMNDNWKSE  102
                GRKGY+TLVLSDKFSY*T FTTTRN +N+NWKSE
Subject    890  GRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSE  991

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5

Range 1: 6634 to 6732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 32/33(97%) 0/33(0%) Plus/Plus
Query        1  LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT  99
                LRFPVVVHSVPGSGKSSLIRELVTEDE+FIAFT
Subject   6634  LRFPVVVHSVPGSGKSSLIRELVTEDENFIAFT  6732

Range 2: 6638 to 6736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 30/33(91%) 0/33(0%) Minus/Minus
Query        5  RS*RL*NSRPQ*QVLLLNYFYHYQEHYERQLEI  103
                R *RL*NSRPQ*QVLLLNYFYHYQE YE+QLEI
Subject   6638  RP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI  6736

Range 3: 6634 to 6735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.3 bits(103) 0.0 30/34(88%) 0/34(0%) Minus/Minus
Query        1  GRKGYKTLVLSDKFSYXXXXXXXXXTMNDNWKSE  102
                GRKGY+ LVLSDKFSY*TTFTTTRN MN+NWKSE
Subject   6634  GRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSE  6735

Range 4: 6635 to 6736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 30/34(88%) 0/34(0%) Plus/Plus
Query        2  SDFQLSFIVFLXXXXXXXXENLSLRTRVL*PLRP  103
                SDFQL FI FLVVVKVV**ENLSLRTR+ *PLRP
Subject   6635  SDFQLLFIAFLVVVKVV**ENLSLRTRIS*PLRP  6736

Range 5: 6675 to 6731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 18/19(95%) 0/19(0%) Plus/Plus
Query       42  *K*FNKRTCH*GREFYSLY  98
                *K*FNKRTCH*GREF+SLY
Subject   6675  *K*FNKRTCH*GREFHSLY  6731

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 2

Range 1: 6634 to 6732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 32/33(97%) 0/33(0%) Plus/Plus
Query        1  LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT  99
                LRFPVVVHSVPGSGKSSLIREL+TEDESFIAFT
Subject   6634  LRFPVVVHSVPGSGKSSLIRELITEDESFIAFT  6732

Range 2: 6638 to 6736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 25/33(76%) 0/33(0%) Minus/Minus
Query        5  RS*RL*NSRPQ*QVLLLNYFYHYQEHYERQLEI  103
                R *+L*NSR Q*  LL NYFYHYQE YE+QLEI
Subject   6638  RP*KL*NSRLQ**ALLSNYFYHYQERYEQQLEI  6736

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 2

Range 1: 890 to 988 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 29/33(88%) 0/33(0%) Plus/Plus
Query        1  LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT  99
                L+FPVVVHSVPGSGKSSLIREL++EDESF+AFT
Subject    890  LKFPVVVHSVPGSGKSSLIRELISEDESFVAFT  988

Range 2: 894 to 968 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 18/25(72%) 0/25(0%) Minus/Minus
Query        5  RPQ*QVLLLNYFYHYQEHYERQLEI  79
                RPQ    LL YFYHY EHYE+QLEI
Subject    894  RPQK*APLLGYFYHYLEHYEQQLEI  968

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 2

Range 1: 6634 to 6732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 29/33(88%) 0/33(0%) Plus/Plus
Query        1  LRFPVVVHSVPGSGKSSLIRELVTEDESFIAFT  99
                L+FPVVVHSVPGSGKSSLIREL++EDESF+AFT
Subject   6634  LKFPVVVHSVPGSGKSSLIRELISEDESFVAFT  6732

Range 2: 6638 to 6712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 18/25(72%) 0/25(0%) Minus/Minus
Query        5  RPQ*QVLLLNYFYHYQEHYERQLEI  79
                RPQ    LL YFYHY EHYE+QLEI
Subject   6638  RPQR*APLLGYFYHYLEHYEQQLEI  6712

Nucleotide Sequence (199 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 806 to 1000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.1 bits(319) 0.0 62/65(95%) 0/65(0%) Plus/Plus
Query        3  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  197
                LS+WHGVIIMNNLVKALSTFEFVG+YSVLRFP VVHSVPGSGKSSLIRELVTEDESFIAFTAGVP
Subject    806  LSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  1000

Range 2: 806 to 1000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 59/65(91%) 0/65(0%) Minus/Minus
Query        3  GNAGRKGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  197
                GNAGRKGY+TLVLSDKFSY*T FTTTRN +N++WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*
Subject    806  GNAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  1000

Range 3: 805 to 1002 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 59/66(89%) 0/66(0%) Plus/Plus
Query        2  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIXXXXXXXXXXX*K*FNKRTCH*GREFYSLYGRRSR  199
                LK LAWCDYYE*LS*SFVYV*VCG L*RAQISSC S  SW*W*K FNKRTCH*GREF+SLYGRRSR
Subject    805  LKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSR  1002

Range 4: 804 to 965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 48/54(89%) 0/54(0%) Minus/Minus
Query        1  PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  162
                PQ*QVLLLN FYHYQE  E+QLEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LR
Subject    804  PQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLR  965

Range 5: 805 to 1002 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 62/66(94%) 0/66(0%) Minus/Minus
Query        2  SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK  199
                SGTPAVKA+KLSSSVTSSLIKLLLPLPGTL*TT GNLSTL* PTNSNVDKALTKLFIIITPCQ LK
Subject    805  SGTPAVKAMKLSSSVTSSLIKLLLPLPGTL*TTTGNLSTL*IPTNSNVDKALTKLFIIITPCQILK  1002

Range 6: 867 to 1001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 40/45(89%) 0/45(0%) Plus/Plus
Query       64  SLWVFIACSDFQLSFIVFLXXXXXXXXENLSLRTRVL*PLRPAFP  198
                SLWVFIACSDFQL F  FLVVVK V**ENLSLRTRV *PLRPAFP
Subject    867  SLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS*PLRPAFP  1001

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7

Range 1: 6550 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 63/65(97%) 0/65(0%) Plus/Plus
Query        3  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  197
                LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFP VVHSVPGSGKSSLIRELVTEDE+FIAFTAGVP
Subject   6550  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGVP  6744

Range 2: 6548 to 6709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 52/54(96%) 0/54(0%) Minus/Minus
Query        1  PQ*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  162
                PQ*QVLLLNYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR
Subject   6548  PQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  6709

Range 3: 6550 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 59/64(92%) 0/64(0%) Minus/Minus
Query        3  NAGRKGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  194
                NAGRKGY+ LVLSDKFSY*TTFTTTRN MN++WKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*
Subject   6550  NAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  6741

Range 4: 6549 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 31/31(100%) 0/31(0%) Plus/Plus
Query        2  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  94
                LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI
Subject   6549  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 5: 6675 to 6743 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 22/23(96%) 0/23(0%) Plus/Plus
Query      128  *K*FNKRTCH*GREFYSLYGRRS  196
                *K*FNKRTCH*GREF+SLYGRRS
Subject   6675  *K*FNKRTCH*GREFHSLYGRRS  6743

Range 6: 6549 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 63/66(95%) 0/66(0%) Minus/Minus
Query        2  SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK  199
                SGTPAVKA+K SSSVTSSLIKLLLPLPGTL*TT GNLSTL*TPTNSNVDKALTKLFIIITPCQTLK
Subject   6549  SGTPAVKAMKFSSSVTSSLIKLLLPLPGTL*TTTGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK  6746

Range 7: 6611 to 6742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 40/44(91%) 0/44(0%) Plus/Plus
Query       64  SLWVFIACSDFQLSFIVFLXXXXXXXXENLSLRTRVL*PLRPAF  195
                SLWVFIACSDFQL FI FLVVVKVV**ENLSLRTR+ *PLRPAF
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS*PLRPAF  6742

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7

Range 1: 6550 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 61/65(94%) 0/65(0%) Plus/Plus
Query        3  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  197
                LSVWH  IIMNNLVKALSTFEFVGVYSVLRFP VVHSVPGSGKSSLIREL+TEDESFIAFTAGVP
Subject   6550  LSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVP  6744

Range 2: 6550 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 52/65(80%) 0/65(0%) Minus/Minus
Query        3  GNAGRKGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  197
                GNAGR+ Y+TLV S++ SY TTFTTTRN MN++WKSEHAINTHKLKRRQSFN*VIHNN  MPNT*
Subject   6550  GNAGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*  6744

Range 3: 6548 to 6706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 46/53(87%) 0/53(0%) Minus/Minus
Query        1  Q*QVLLLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  159
                Q*  LL NYFYHYQE YE+QLEI*ARYKHPQTQT*TKL*LSYS**S++AKHLR
Subject   6548  Q**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLR  6706

Range 4: 6549 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 61/66(92%) 0/66(0%) Minus/Minus
Query        2  SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK  199
                SGTPAVKA+KLSSSV SSLIKLLLPLPGTL*TT GNLSTL*TPTNSNVDKALTKLFIII  CQTLK
Subject   6549  SGTPAVKAMKLSSSVMSSLIKLLLPLPGTL*TTTGNLSTL*TPTNSNVDKALTKLFIII**CQTLK  6746

Range 5: 6549 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 29/31(94%) 0/31(0%) Plus/Plus
Query        2  LKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  94
                LKCLA  DYYE*LS*SFVYV*VCGCL*RAQI
Subject   6549  LKCLALLDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 6: 6675 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 16/24(67%) 0/24(0%) Plus/Plus
Query      128  *K*FNKRTCH*GREFYSLYGRRSR  199
                *K*F+KR  +* REF+S +GRRSR
Subject   6675  *K*FDKRAHY*RREFHSFHGRRSR  6746

Range 7: 6611 to 6745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 36/45(80%) 0/45(0%) Plus/Plus
Query       64  SLWVFIACSDFQLSFIVFLXXXXXXXXENLSLRTRVL*PLRPAFP  198
                SLWVFIACSDFQL FI FLVVVKVV**E+  L+TRV *  RPAFP
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS*LSRPAFP  6745

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1

Sequence ID: AB277788.1 Length: 2876 Number of Matches: 5

Range 1: 806 to 1000 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 55/65(85%) 0/65(0%) Plus/Plus
Query        3  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  197
                LSVWHGV IMNNLVKALS FEFVGV+ VL+FP VVHSVPGSGKSSLIREL++EDE+F+AFTAGVP
Subject    806  LSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVP  1000

Range 2: 805 to 1002 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 56/66(85%) 0/66(0%) Minus/Minus
Query        2  SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK  199
                SGTPAVKA K SSS  SSLI+LLLPLPGTL*TT GNLST  TPTNSN DKALTKLFII+TPCQTLK
Subject    805  SGTPAVKATKASSSEMSSLIRLLLPLPGTL*TTTGNLSTQNTPTNSNADKALTKLFIILTPCQTLK  1002

Range 3: 804 to 947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 35/48(73%) 0/48(0%) Minus/Minus
Query        1  LLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  144
                LL YFYHY EH E+QLEI*      Q QT TKL*LSYS* SHHAKHLR
Subject    804  LLGYFYHYLEHCEQQLEI*VHKTRQQIQTQTKL*LSYS*YSHHAKHLR  947

Range 4: 806 to 985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 35/60(58%) 0/60(0%) Minus/Minus
Query        3  KGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  182
                +G+K+LV  ++  Y* TFTTT NT+N++WK ++  + +K KRRQSF+*VIHN HTMPNT*
Subject    806  EGHKSLVFRNELPY*ATFTTTWNTVNNNWKFKYTKHANKFKRRQSFD*VIHNTHTMPNT*  985

Range 5: 805 to 873 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 19/23(83%) 0/23(0%) Plus/Plus
Query        2  LKCLAWCDYYE*LS*SFVYV*VC  70
                LKCLAWC+YYE*LS SFV V*+C
Subject    805  LKCLAWCEYYE*LSQSFVCV*IC  873

Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome

Sequence ID: KR054734.1 Length: 8753 Number of Matches: 5

Range 1: 6550 to 6744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 55/65(85%) 0/65(0%) Plus/Plus
Query        3  LSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPAVVHSVPGSGKSSLIRELVTEDESFIAFTAGVP  197
                LSVWHGV IMNNLVKALS FEFVGV+ VL+FP VVHSVPGSGKSSLIREL++EDE+F+AFTAGVP
Subject   6550  LSVWHGVSIMNNLVKALSAFEFVGVFRVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVP  6744

Range 2: 6549 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 56/66(85%) 0/66(0%) Minus/Minus
Query        2  SGTPAVKAIKLSSSVTSSLIKXXXXXXXXXXXTAGNLSTL*TPTNSNVDKALTKLFIIITPCQTLK  199
                SGTPAVKA K SSS  SSLI+LLLPLPGTL*TT GNLST  TPTNSN DKALTKLFII+TPCQTLK
Subject   6549  SGTPAVKATKASSSEMSSLIRLLLPLPGTL*TTTGNLSTRNTPTNSNADKALTKLFIILTPCQTLK  6746

Range 3: 6548 to 6691 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 35/48(73%) 0/48(0%) Minus/Minus
Query        1  LLNYFYHYQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLR  144
                LL Y YHY EH E+QLEI*    H Q QT TKL*LSYS* SHHAKHLR
Subject   6548  LLGYSYHYLEHCEQQLEI*VHETHQQIQTQTKL*LSYS*YSHHAKHLR  6691

Range 4: 6550 to 6729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 35/60(58%) 0/60(0%) Minus/Minus
Query        3  KGYKTLVLSDKFSYXXXXXXXXXTMNDSWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*  182
                +G+K+LV  ++  Y* T TTT NT+N++WK ++  +T+K KRRQSF+*VIHN HTMPNT*
Subject   6550  EGHKSLVFRNELPY*ATLTTTWNTVNNNWKFKYTKHTNKFKRRQSFD*VIHNTHTMPNT*  6729

Range 5: 6549 to 6626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 20/26(77%) 0/26(0%) Plus/Plus
Query        2  LKCLAWCDYYE*LS*SFVYV*VCGCL  79
                LKCLAWC+YYE*LS SFV V*+C C+
Subject   6549  LKCLAWCEYYE*LSQSFVCV*ICWCV  6626

Nucleotide Sequence (171 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
18
36
54
72
90
108
126
144
162
171

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8

Range 1: 827 to 997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 54/57(95%) 0/57(0%) Minus/Plus
Query        1  IIMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV  171
                IIMNNLVK LSTFEFVG+YSVLRFPVVVHSVPG GKSSLIRELVTEDESFIAFTAGV
Subject    827  IIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGV  997

Range 2: 828 to 995 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 50/56(89%) 0/56(0%) Plus/Minus
Query        3  RRP*RL*NSRPQ*QVLLLNYFYHHQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**  170
                RRP*RL*NSRPQ*QVLLLN FYH+QE  E+QLEI*ARYK+PQTQT*TKL*LSYS**
Subject    828  RRP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**  995

Range 3: 827 to 997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 51/57(89%) 0/57(0%) Plus/Minus
Query        1  NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQNFN*VIHNN  171
                NAGRKGY+TLVLSDKFSY*T FTTTRN +N+NWKSEHAINTHKLKRRQ+FN*VIHNN
Subject    827  NAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNN  997

Range 4: 828 to 995 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 50/56(89%) 0/56(0%) Minus/Plus
Query        3  LL*IT*LKFCLRLSLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPA  170
                LL*IT*LK CLRLSLWVFIACSDFQL F  FLVVVK V**ENLSLRTRV *PLRPA
Subject    828  LL*IT*LKLCLRLSLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS*PLRPA  995

Range 5: 934 to 996 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 19/21(90%) 0/21(0%) Minus/Plus
Query        2  K*FNKRTCH*GREFYSLYGRR  64
                K FNKRTCH*GREF+SLYGRR
Subject    934  KQFNKRTCH*GREFHSLYGRR  996

Range 6: 829 to 897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 22/23(96%) 0/23(0%) Minus/Plus
Query      101  YYE*LS*SFVYV*VCGCL*RAQI  169
                YYE*LS*SFVYV*VCG L*RAQI
Subject    829  YYE*LS*SFVYV*VCGYL*RAQI  897

Range 7: 940 to 996 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(81) 0.0 18/19(95%) 0/19(0%) Plus/Minus
Query        2  TPAVKAIKLSSSVTSSLIK  58
                TPAVKA+KLSSSVTSSLIK
Subject    940  TPAVKAMKLSSSVTSSLIK  996

Range 8: 829 to 864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.0 bits(53) 0.0 11/12(92%) 0/12(0%) Plus/Minus
Query      134  NVDKTLTKLFII  169
                NVDK LTKLFII
Subject    829  NVDKALTKLFII  864

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8

Range 1: 6571 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 54/57(95%) 0/57(0%) Minus/Plus
Query        1  IIMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV  171
                IIMNNLVK LSTFEFVGVYSVLRFPVVVHSVPG GKSSLIREL+TEDESFIAFTAGV
Subject   6571  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGV  6741

Range 2: 6572 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 48/56(86%) 0/56(0%) Plus/Minus
Query        3  RRP*RL*NSRPQ*QVLLLNYFYHHQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**  170
                RRP*+L*NSR Q*  LL NYFYH+QE YE+QLEI*ARYKHPQTQT*TKL*LSYS**
Subject   6572  RRP*KL*NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**  6739

Range 3: 6571 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 46/57(81%) 0/57(0%) Plus/Minus
Query        1  NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQNFN*VIHNN  171
                NAGR+ Y+TLV S++ SY TTFTTTRN MN+NWKSEHAINTHKLKRRQ+FN*VIHNN
Subject   6571  NAGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  6741

Range 4: 6572 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 46/56(82%) 0/56(0%) Minus/Plus
Query        3  LL*IT*LKFCLRLSLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPA  170
                LL*IT*LK CLRLSLWVFIACSDFQL FI FLVVVKVV**E+  L+TRV *  RPA
Subject   6572  LL*IT*LKLCLRLSLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS*LSRPA  6739

Range 5: 6573 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 23/23(100%) 0/23(0%) Minus/Plus
Query      101  YYE*LS*SFVYV*VCGCL*RAQI  169
                YYE*LS*SFVYV*VCGCL*RAQI
Subject   6573  YYE*LS*SFVYV*VCGCL*RAQI  6641

Range 6: 6678 to 6740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 13/21(62%) 0/21(0%) Minus/Plus
Query        2  K*FNKRTCH*GREFYSLYGRR  64
                K*F+KR  +* REF+S +GRR
Subject   6678  K*FDKRAHY*RREFHSFHGRR  6740

Range 7: 6684 to 6740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.9 bits(75) 0.0 17/19(89%) 0/19(0%) Plus/Minus
Query        2  TPAVKAIKLSSSVTSSLIK  58
                TPAVKA+KLSSSV SSLIK
Subject   6684  TPAVKAMKLSSSVMSSLIK  6740

Range 8: 6573 to 6608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.0 bits(53) 0.0 11/12(92%) 0/12(0%) Plus/Minus
Query      134  NVDKTLTKLFII  169
                NVDK LTKLFII
Subject   6573  NVDKALTKLFII  6608

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8

Range 1: 6571 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 54/57(95%) 0/57(0%) Minus/Plus
Query        1  IIMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV  171
                IIMNNLVK LSTFEFVGVYSVLRFPVVVHSVPG GKSSLIRELVTEDE+FIAFTAGV
Subject   6571  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGV  6741

Range 2: 6572 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 53/56(95%) 0/56(0%) Plus/Minus
Query        3  RRP*RL*NSRPQ*QVLLLNYFYHHQEHYERQLEI*ARYKHPQTQT*TKL*LSYS**  170
                RRP*RL*NSRPQ*QVLLLNYFYH+QE YE+QLEI*ARYKHPQTQT*TKL*LSYS**
Subject   6572  RRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**  6739

Range 3: 6571 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 52/57(91%) 0/57(0%) Plus/Minus
Query        1  NAGRKGYKTLVLSDKFSYXXXXXXXXXXMNDNWKSEHAINTHKLKRRQNFN*VIHNN  171
                NAGRKGY+ LVLSDKFSY*TTFTTTRN MN+NWKSEHAINTHKLKRRQ+FN*VIHNN
Subject   6571  NAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  6741

Range 4: 6572 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 51/56(91%) 0/56(0%) Minus/Plus
Query        3  LL*IT*LKFCLRLSLWVFIACSDFQLSFIVFLXXXXXXX*ENLSLRTRVL*PLRPA  170
                LL*IT*LK CLRLSLWVFIACSDFQL FI FLVVVKVV**ENLSLRTR+ *PLRPA
Subject   6572  LL*IT*LKLCLRLSLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS*PLRPA  6739

Range 5: 6573 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 23/23(100%) 0/23(0%) Minus/Plus
Query      101  YYE*LS*SFVYV*VCGCL*RAQI  169
                YYE*LS*SFVYV*VCGCL*RAQI
Subject   6573  YYE*LS*SFVYV*VCGCL*RAQI  6641

Range 6: 6678 to 6740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 20/21(95%) 0/21(0%) Minus/Plus
Query        2  K*FNKRTCH*GREFYSLYGRR  64
                K*FNKRTCH*GREF+SLYGRR
Subject   6678  K*FNKRTCH*GREFHSLYGRR  6740

Range 7: 6684 to 6740 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.8 bits(77) 0.0 17/19(89%) 0/19(0%) Plus/Minus
Query        2  TPAVKAIKLSSSVTSSLIK  58
                TPAVKA+K SSSVTSSLIK
Subject   6684  TPAVKAMKFSSSVTSSLIK  6740

Range 8: 6573 to 6608 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.0 bits(53) 0.0 11/12(92%) 0/12(0%) Plus/Minus
Query      134  NVDKTLTKLFII  169
                NVDK LTKLFII
Subject   6573  NVDKALTKLFII  6608

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 2

Range 1: 6574 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 47/56(84%) 0/56(0%) Minus/Plus
Query        1  IMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV  168
                IMNNLVK LSTFEF+GV+SVL+FPVV+HSVPG GKSSLIREL++EDESF+AFTAGV
Subject   6574  IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGV  6741

Range 2: 6575 to 6718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 27/48(56%) 0/48(0%) Plus/Minus
Query       24  NSRPQ*QVLLLNYFYHHQEHYERQLEI*ARYKHPQTQT*TKL*LSYS*  167
                NSRP     LLNY YH Q HY  +LEI*A  KH  T+  T L* +YS*
Subject   6575  NSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*TRRLTML*PNYS*  6718

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 1

Range 1: 6574 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 47/56(84%) 0/56(0%) Minus/Plus
Query        1  IMNNLVKVLSTFEFVGVYSVLRFPVVVHSVPGGGKSSLIRELVTEDESFIAFTAGV  168
                IMNNLVK LSTFEF+GV+SVL+FPVV+HSVPG GKSSLIREL++EDESF+AFTAGV
Subject   6574  IMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGV  6741

Nucleotide Sequence (248 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
25
50
75
100
125
150
175
200
225
248

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 3337 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 75/82(91%) 0/82(0%) Plus/Minus
Query        3  MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQSQ  248
                MI*LQTQNST*RPLIFPKLPA LIFWCY++QS MVPNAE*GNHFIFC+SIF+KLLPYGWARKS INW*FTFHERPYSCLQSQ
Subject   3337  MI*LQTQNST*RPLIFPKLPAHLIFWCYNNQSHMVPNAE*GNHFIFCVSIFTKLLPYGWARKSWINW*FTFHERPYSCLQSQ  3582

Range 2: 3337 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
184.8 bits(397) 0.0 77/82(94%) 0/82(0%) Minus/Plus
Query        3  LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  248
                LALKAGIRSFVESESPVD ALS PTIRKQLGENAYAENEMIALFCVRHH RLIIITPEYE SWKFGENE PLCGILCLKSNH
Subject   3337  LALKAGIRSFVESESPVDPALSGPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNH  3582

Range 3: 3338 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.6 bits(390) 0.0 77/82(94%) 0/82(0%) Plus/Minus
Query        2  NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLPSKP  247
                NDLTSNTKFHIEA+HFPQTSSSPHILVL**SVSHGA*RRIRQSFHFL KHF QVASVWLG KEL+QLVIHFPRTTLFLPSKP
Subject   3338  NDLTSNTKFHIEATHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLRKHFHQVASVWLGPKELDQLVIHFPRTTLFLPSKP  3583

Range 4: 3339 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.2 bits(363) 0.0 74/82(90%) 0/82(0%) Minus/Plus
Query        1  GFEGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKSF  246
                GFEGRNKVVRGK*ITS* SSF PNHTEATW KCL RK*NDCLILR*AP ETD++NTRI*GELEVWGK* ASMWNFVFEVKSF
Subject   3339  GFEGRNKVVRGK*ITS*SSSFGPNHTEATW*KCLRRK*NDCLILR*APCETDYYNTRI*GELEVWGK*VASMWNFVFEVKSF  3584

Range 5: 3339 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 75/82(91%) 0/82(0%) Plus/Minus
Query        1  K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA  246
                K*FDFKHKIPHRG SFSPNFQL+SYSGV++ISL+WCLTQNKAIISFSA*AFSPSCFRMVG ERA STGDSLSTNDLIPAFKA
Subject   3339  K*FDFKHKIPHRGHSFSPNFQLTSYSGVIIISLTWCLTQNKAIISFSA*AFSPSCFRMVGPERAGSTGDSLSTNDLIPAFKA  3584

Range 6: 3338 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.8 bits(301) 0.0 75/82(91%) 0/82(0%) Minus/Plus
Query        2  WL*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXLPYSALGTMRD*SS*HQNMRRAGSLGKMRGLYVEFCV*SQII  247
                WL*RQE*GRSWKVNHQLIQLFRAQPYGSNL KML QKMK*LPYSALGTM D*  *HQNMR AGSLGKM GLYVEFCV*SQII
Subject   3338  WL*RQE*GRSWKVNHQLIQLFRAQPYGSNLVKMLTQKMK*LPYSALGTM*D*LL*HQNMR*AGSLGKMSGLYVEFCV*SQII  3583

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 3337 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.3 bits(398) 0.0 77/82(94%) 0/82(0%) Minus/Plus
Query        3  LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  248
                LALKAGIRSFVESESPVD ALS+PTIRKQLGENAYAENEMIALFCVRHH RLIIITPEYE SWKFGENE PLCGILCLKSNH
Subject   3337  LALKAGIRSFVESESPVDPALSNPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNH  3582

Range 2: 3342 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 64/81(79%) 0/81(0%) Minus/Plus
Query        1  FEGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKSF  243
                FEG NKVV GK*IT * SSF+PN+TEATW KCLCRK*NDCLIL *A  ETDH+N RI* ELEVWG+* ASMWNFVF+V+SF
Subject   3342  FEGGNKVVCGK*ITG*SSSFKPNYTEATW*KCLCRK*NDCLILC*ASCETDHYNARI*SELEVWGE*MASMWNFVFKVQSF  3584

Range 3: 3341 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 66/81(81%) 0/81(0%) Plus/Minus
Query        2  NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLPSK  244
                ND T NTKFHIEA H PQTSSS HIL L**SVSH A* RIRQSFHFLHKHF QVASV LG KEL+Q VIHFP+TTLF PSK
Subject   3341  NDWTLNTKFHIEAIHSPQTSSSLHILAL**SVSHDA*HRIRQSFHFLHKHFHQVASV*LGLKELDQPVIHFPQTTLFPPSK  3583

Range 4: 3339 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 73/82(89%) 0/82(0%) Plus/Minus
Query        1  K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA  246
                K* DFKHKIPHRG SFSPNFQL+SYSGV+MISL+ CLTQNKAIISFSA*AFSPSCFR+VG ERA STGDSLSTNDLIPAFKA
Subject   3339  K*LDFKHKIPHRGHSFSPNFQLTSYSGVIMISLT*CLTQNKAIISFSA*AFSPSCFRIVGFERAGSTGDSLSTNDLIPAFKA  3584

Range 5: 3340 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 62/81(77%) 0/81(0%) Plus/Minus
Query        3  MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQS  245
                MI L TQNST*RP I PKLPA  IFW Y+DQS M+PN E*GNHFIFCISIF+KLLPY W  KS IN *FTFH+RPYS LQS
Subject   3340  MIGL*TQNST*RPFILPKLPAHFIFWRYNDQSHMMPNTE*GNHFIFCISIFTKLLPYSWV*KSWINR*FTFHKRPYSRLQS  3582

Range 6: 3341 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 64/81(79%) 0/81(0%) Minus/Plus
Query        2  L*RQE*GRSWKVNHQLIQLFRAQPYGSNXXXXXXXXXXXLPYSALGTMRD*SS*HQNMRRAGSLGKMRGLYVEFCV*SQII  244
                L*R+E*GR WKVNH+LIQLF+ Q YGSNL KMLMQKMK*LPYS LG M D*S * QNM+ AGSLG+M GLYVEFCV*S II
Subject   3341  L*RRE*GRLWKVNHRLIQLFQTQLYGSNLVKMLMQKMK*LPYSVLGIM*D*SL*RQNMK*AGSLGRMNGLYVEFCV*SPII  3583

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 7

Range 1: 3337 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 68/82(83%) 0/82(0%) Minus/Plus
Query        3  LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  248
                LALKAGIRSFVESE  V  +LS+PTI KQLGEN YAENEMIALFC+RHH RLI+ITPEYE SWKFGE+E PLCGILCLKSNH
Subject   3337  LALKAGIRSFVESECLVSPSLSAPTIHKQLGENVYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSNH  3582

Range 2: 3339 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 60/82(73%) 0/82(0%) Plus/Minus
Query        1  K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA  246
                K*FD + +IPHRG S SPNFQL+SYSGV+ ISL+WCL QNKAIISFSA* FSPSC  MVG ER   T  SLST D IPAFKA
Subject   3339  K*FDLRQRIPHRGHSLSPNFQLTSYSGVITISLTWCLMQNKAIISFSA*TFSPSCL*MVGAERLGLTRHSLSTKDRIPAFKA  3584

Range 3: 3345 to 3581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 39/79(49%) 0/79(0%) Minus/Plus
Query        4  EGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKS  240
                +G   +  G+*+ S       NH++ T R+CLCR+*+DCLIL *AP E D  +TRI* +LEVWG+* A MWN +  +KS
Subject   3345  KGWYSIFCGE*MPSKSKPLSSNHSQTTGRECLCRE*DDCLILH*APCEADSDHTRI*SQLEVWGE*VAPMWNSLS*IKS  3581

Range 4: 3347 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 39/79(49%) 0/79(0%) Plus/Minus
Query        2  NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLP  238
                +DL  + +FHI A+H PQTS+  HILV   S SHGA* +IRQS H  HKH L V   WL  + L+ L IH P+   + P
Subject   3347  SDLI*DKEFHIGATHSPQTSN*LHILV*SLSASHGA*CKIRQSSHSRHKHSLPVVCEWLELRGLDLLGIHSPQKIEYQP  3583

Range 5: 3403 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 34/60(57%) 0/60(0%) Plus/Minus
Query        3  MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWA  182
                +I* +T+NST* PL  PKLP   IFWC   Q  MVPNA+*GNH I  I+I S+L   GW+
Subject   3403  VI*FKTKNST*GPLTLPKLPTDFIFWCDHYQPHMVPNAK*GNHLILGINILSQLFVNGWS  3582

Range 6: 3503 to 3580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 16/26(62%) 0/26(0%) Minus/Plus
Query        5  HQNMRRAGSLGKMRGLYVEFCV*SQI  82
                HQNM+  GSLG++ G YVEF V +QI
Subject   3503  HQNMKSVGSLGRVSGPYVEFFVLNQI  3580

Range 7: 3368 to 3484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 20/39(51%) 0/39(0%) Minus/Plus
Query      101  WKVNHQLIQLFRAQPYGSNXXXXXXXXXXXLPYSALGTM  217
                W+VN   +Q  + QP+ +N E+M M +M+*LPY ALGTM
Subject   3368  WRVNA**VQASQLQPFTNNWERMFMPRMR*LPYFALGTM  3484

Rupestris stem pitting associated virus isolate RSPaV PN, complete genome

Sequence ID: AY368172.2 Length: 8743 Number of Matches: 5

Range 1: 3337 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.5 bits(357) 0.0 69/82(84%) 0/82(0%) Minus/Plus
Query        3  LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  248
                LALKAGIRSFVESES  DS+LSSP + KQLGE+AYAENEMIALFC+RH  RLIIITPEYE SWKFGE+E PLCGILCLKSNH
Subject   3337  LALKAGIRSFVESESLADSSLSSPAVLKQLGEDAYAENEMIALFCIRHQVRLIIITPEYEVSWKFGESEWPLCGILCLKSNH  3582

Range 2: 3339 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 59/82(72%) 0/82(0%) Plus/Minus
Query        1  K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA  246
                K*FDFKH++PH+G S SPNFQL+SYSGV++I+L+WCL QNKAIISFSA*A SPSCF+  G ++ ES  DSLST D IPAFKA
Subject   3339  K*FDFKHRMPHKGHSLSPNFQLTSYSGVIIINLTWCLIQNKAIISFSA*ASSPSCFKTAGEDKDESARDSLSTKDRIPAFKA  3584

Range 3: 3337 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 40/82(49%) 0/82(0%) Plus/Minus
Query        3  MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQSQ  248
                MI* Q QN+  RPL FPKLP   IF   ++Q  +VPN + G H I CISIF+KLL   W  + *I    TF++RPY+   S+
Subject   3337  MI*FQAQNAAQRPLAFPKLPTYFIFRGDNNQPHLVPNTKQGYHLILCISIFTKLL*NCWRGQR*IRKGLTFNKRPYTSF*SE  3582

Range 4: 3417 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 30/56(54%) 0/56(0%) Minus/Plus
Query        1  EATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKSF  168
                +ATW +CLCR+*+D L+L *AP E D+++  I* +LEVWGK  A + + V E+KSF
Subject   3417  KATW*RCLCRE*DDSLVLY*APSEVDYYHP*I*SKLEVWGKRVAFVRHSVLEIKSF  3584

Range 5: 3353 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 35/77(45%) 0/77(0%) Plus/Minus
Query        2  NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLF  232
                NDL S+T+   +A+ FPQTS+  HI   **S S GA* + R S H LHKH  QVA   L   ++N    HF + T++
Subject   3353  NDLISSTECRTKATRFPQTSNLLHIQG***STSLGA*YKTRLSSHSLHKHLHQVALKLLERTKMNPQGTHFQQKTVY  3583

Grapevine rupestris stem pitting associated virus isolate SK704 C, complete genome

Sequence ID: KX274276.1 Length: 8726 Number of Matches: 7

Range 1: 3338 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 69/82(84%) 0/82(0%) Minus/Plus
Query        3  LALKAGIRSFVESESPVDSALSSPTIRKQLGENAYAENEMIALFCVRHHERLIIITPEYEESWKFGENERPLCGILCLKSNH  248
                LALKAGIRSFVESE  V S LS+PTI KQL ENAYAENEMIALFCVRHH RLI++TPEYE SWKFGE+E PLCGILCLKSNH
Subject   3338  LALKAGIRSFVESERLVSSDLSAPTISKQLEENAYAENEMIALFCVRHHVRLIVVTPEYEVSWKFGESEWPLCGILCLKSNH  3583

Range 2: 3340 to 3585 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 56/82(68%) 0/82(0%) Plus/Minus
Query        1  K*FDFKHKIPHRGLSFSPNFQLSSYSGVMMISLSWCLTQNKXXXXXXXXXXXPSCFRMVGLERAESTGDSLSTNDLIPAFKA  246
                K* DF+ +IPHRG S SPNFQL+SYSGV  ISL+WC TQN AIISFSA*AFS +C  +VG ER+E T  SLST D +PAF+A
Subject   3340  K*LDFRQRIPHRGHSLSPNFQLTSYSGVTTISLTWCRTQNNAIISFSA*AFSSNCLEIVGAERSELTRRSLSTKDRMPAFRA  3585

Range 3: 3338 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 44/82(54%) 0/82(0%) Plus/Minus
Query        3  MI*LQTQNST*RPLIFPKLPALLIFWCYDDQSLMVPNAE*GNHFIFCISIFSKLLPYGWARKS*INW*FTFHERPYSCLQSQ  248
                +I LQ +NST*RPL FPK P   IFWCY  Q  +VP+ +* NHFIF I I  +L    W+ K * N  FTFHER  + LQS+
Subject   3338  VIGLQAKNST*RPLTFPKFPTNFIFWCYHYQPYVVPDTK*CNHFIFSIGILLQLFRNSWS*KI*TNQAFTFHERSNAGLQSK  3583

Range 4: 3346 to 3582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 44/79(56%) 0/79(0%) Minus/Plus
Query        4  EGRNKVVRGK*ITS*FSSFEPNHTEATWRKCLCRK*NDCLILR*AP*ETDHHNTRI*GELEVWGK*EASMWNFVFEVKS  240
                EGR+ + RGK*   *F SF  N+      +CLC K*NDC+IL  AP + D  NTRI*  LE+WGK* ASMWN + EV+S
Subject   3346  EGRHSIFRGK*TPG*FRSFSSNYF*TIGGECLC*K*NDCIILCPAPRKADSGNTRI*S*LEIWGK*VASMWNSLPEVQS  3582

Range 5: 3342 to 3584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 39/81(48%) 0/81(0%) Plus/Minus
Query        2  NDLTSNTKFHIEASHFPQTSSSPHILVL**SVSHGA*RRIRQSFHFLHKHFLQVASVWLGSKELNQLVIHFPRTTLFLPSK  244
                +D TS  +FHIEA+HFPQ S+  HILVL  S   GA  +I QSFHF H+H   +    L  K+LN   +HFPR     PS+
Subject   3342  SDWTSGKEFHIEATHFPQISN*LHILVLPLSALRGAGHKIMQSFHFQHRHSPPIV*K*LELKDLN*PGVHFPRKIECRPSE  3584

Range 6: 3465 to 3581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 22/39(56%) 0/39(0%) Minus/Plus
Query        5  YSALGTMRD*SS*HQNMRRAGSLGKMRGLYVEFCV*SQI  121
                Y   GT   *  *HQNM+  G+LGK+ GLYVEF  *S I
Subject   3465  YFVSGTT*G**W*HQNMKLVGNLGKVSGLYVEFFA*SPI  3581

Range 7: 3342 to 3425 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 13/28(46%) 0/28(0%) Minus/Plus
Query      161  L*RQE*GRSWKVNHQLIQLFRAQPYGSN  244
                L*R     SWKVN  L+Q+F+ Q + +N
Subject   3342  L*RPAFDLSWKVNAWLVQIFQLQLFLNN  3425

Nucleotide Sequence (250 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
25
50
75
100
125
150
175
200
225
250

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 1364 to 1612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.1 bits(426) 0.0 78/83(94%) 0/83(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  249
                LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA RHRKKLIIMQ*NAFSA CELGQNYHPIDDWLGHWL A+FPKKVKFAILR
Subject   1364  LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLSASFPKKVKFAILR  1612

Range 2: 1365 to 1613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
198.1 bits(426) 0.0 83/83(100%) 0/83(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG
Subject   1365  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  1613

Range 3: 1364 to 1612 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.8 bits(421) 0.0 82/83(99%) 0/83(0%) Minus/Minus
Query        1  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  249
                PEYGKFDFLRK STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK
Subject   1364  PEYGKFDFLRK*STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  1612

Range 4: 1365 to 1613 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 80/83(96%) 0/83(0%) Minus/Minus
Query        2  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE  250
                P*VWQI*LS*EM+H ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HLVPHKE
Subject   1365  P*VWQI*LS*EMKH*ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKE  1613

Range 5: 1366 to 1611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 77/82(94%) 0/82(0%) Plus/Plus
Query        3  SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ  248
                SL*GTRCYI*CCYLIEIKGSD R**ALVLHCC+KT*KEIDHHAVKCLFS+LRIGPKLSPH*RLAWALA C IS*ESQICHTQ
Subject   1366  SL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPH*RLAWALA*CFIS*ESQICHTQ  1611

Range 6: 1366 to 1611 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.2 bits(387) 0.0 77/82(94%) 0/82(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  248
                LSMANLTFLGN A SQCPSQSSMG**FWPNSQ AEKAFHCMMINFFLCL AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG
Subject   1366  LSMANLTFLGNEALSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQG  1611

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 7108 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.7 bits(423) 0.0 81/83(98%) 0/83(0%) Minus/Minus
Query        1  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  249
                PEYGKFDFLRKCSTKPMP PIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTS+LTRK
Subject   7108  PEYGKFDFLRKCSTKPMPTPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRK  7356

Range 2: 7108 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 76/83(92%) 0/83(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  249
                LPCEVRGATFDVVTLLKSRDPT DDKHWFYIAA RHRKKLIIMQ*NAFSA CELGQNYHP+DDW GHWLGAAF KKVKFAI R
Subject   7108  LPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPVDDWRGHWLGAAFSKKVKFAIFR  7356

Range 3: 7109 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.6 bits(414) 0.0 81/83(98%) 0/83(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                FLVR EVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIG+GIGLVLHFLRKSNLPYSG
Subject   7109  FLVRCEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGVGIGLVLHFLRKSNLPYSG  7357

Range 4: 7110 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.1 bits(389) 0.0 75/82(91%) 0/82(0%) Plus/Plus
Query        3  SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ  248
                SL*G RCYI*CCYLIEIKGSD R**ALVLHCC+KT*KEIDHHAVKCLFS+LRIGPKLSP *RLAWALAWCCI *ESQICH Q
Subject   7110  SL*GARCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLSPR*RLAWALAWCCIF*ESQICHIQ  7355

Range 5: 7109 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 77/83(93%) 0/83(0%) Minus/Minus
Query        2  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE  250
                P*+WQI*LS*+MQHQANA ANRQ GDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHR SDPLISIR*QHQM*HL PHKE
Subject   7109  P*IWQI*LS*KMQHQANAHANRQRGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKE  7357

Range 6: 7110 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.0 bits(380) 0.0 75/82(91%) 0/82(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  248
                L+MANLTFL NAAPSQCP QSS G**FWPNSQ AEKAFHCMMINFFLCL AAM*NQCLSS VGSLDFNKVTTSNVAPRTSQG
Subject   7110  LNMANLTFLENAAPSQCPRQSSTG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQG  7355

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6

Range 1: 7108 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.1 bits(402) 0.0 78/83(94%) 0/83(0%) Minus/Minus
Query        1  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRK  249
                PEYGKFDFLRKCSTKPMPKPIVNGV VLAQFAGC*KGISLHDDQ L MSCCSNVEPVLII GRI *FQ*GNNIKCSTSYLTRK
Subject   7108  PEYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRK  7356

Range 2: 7109 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.9 bits(395) 0.0 78/83(94%) 0/83(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                FLVRYEVLHLMLLPY*NQ IRP MISTGSTLLQQDI R+*SSCSEMPFQQPANWAKT+TPLTIGLGIGLVLHFLRKSNLPYSG
Subject   7109  FLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYSG  7357

Range 3: 7108 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
180.7 bits(388) 0.0 73/83(88%) 0/83(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  249
                LPCEVRG TFDVVTLLKSRDPT DDKHWFYIAA RHRKKLIIMQ*+AFSA CELGQN + IDD LGHWLGAAFPKKVKFA+LR
Subject   7108  LPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*DAFSATCELGQNCYSIDDRLGHWLGAAFPKKVKFAVLR  7356

Range 4: 7110 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
169.7 bits(364) 0.0 73/82(89%) 0/82(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  248
                LS ANLTFLGNAAPSQCPS SSM * FWPNSQ AEKA HCMMINFFLCL AAM*NQCLSS VGSLDFNKVTTSNV PRTSQG
Subject   7110  LSTANLTFLGNAAPSQCPSLSSME*QFWPNSQVAEKASHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQG  7355

Range 5: 7110 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 69/82(84%) 0/82(0%) Plus/Plus
Query        3  SL*GTRCYI*CCYLIEIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQICHTQ  248
                SL*GTR YI*CCYLIEIK SD  **ALVLHCC+KT*+E+DHHAV+CLFS+LRIGPKL  H*R AWALAWCCIS*ESQIC TQ
Subject   7110  SL*GTRYYI*CCYLIEIKRSDL***ALVLHCCNKT*EEVDHHAVRCLFSNLRIGPKLLLH*R*AWALAWCCIS*ESQICRTQ  7355

Range 6: 7109 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 72/83(87%) 0/83(0%) Minus/Minus
Query        2  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLISIR*QHQM*HLVPHKE  250
                P*V QI*LS*EMQHQANAQA RQW +SFGPIRRLLKRH TA**S S YVLLQQCRTSAYH+ SD LISIR*QHQM*+LVPHKE
Subject   7109  P*VRQI*LS*EMQHQANAQAYRQWSNSFGPIRRLLKRHLTA**STSSYVLLQQCRTSAYHQRSDLLISIR*QHQM*YLVPHKE  7357

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 6

Range 1: 7108 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 63/83(76%) 0/83(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  249
                LPCEVRG+TF+VVTLLKSRDPTP+D+HWFYIAA RHR+KLIIMQ*+AFSAACELG+N++ ID WLGHW  AAFP++VK  + R
Subject   7108  LPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFPEEVKSTLFR  7356

Range 2: 7109 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 61/83(73%) 0/83(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                +LV+ EV  L    +*NQ I+P  I TG TLL QD  RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG
Subject   7109  YLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG  7357

Range 3: 7110 to 7355 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 58/82(71%) 0/82(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  248
                L+  +LT  GNAA +QCPSQ SM   F PNSQAAEKA +CM+INF LCL AAM*NQCLSSGVGSLDF +VTT  V P TSQG
Subject   7110  LNKVDLTSSGNAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQG  7355

Range 4: 7111 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 56/82(68%) 0/82(0%) Minus/Minus
Query        4  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTR  249
                PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ   ++K  TS  TR
Subject   7111  PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR  7356

Range 5: 7155 to 7343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 47/63(75%) 0/63(0%) Plus/Plus
Query       48  EIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQI  236
                EIK S+PR *ALVLHCC KT  EID+HAV+CLFSSLRIG K   H*+LAWAL  CCIS* SQI
Subject   7155  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIS*GSQI  7343

Range 6: 7154 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 46/68(68%) 0/68(0%) Minus/Minus
Query       47  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS  250
                P*+  I*L  EMQH+ NAQAN QW   F PIRRLLKRH TA* SIS  VL QQC+TSAY  G D LIS
Subject   7154  P*IR*I*LPQEMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7357

Rupestris stem pitting associated virus 1, complete genome

Sequence ID: AF057136.1 Length: 8744 Number of Matches: 6

Range 1: 7109 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 62/83(75%) 0/83(0%) Plus/Plus
Query        1  LPCEVRGATFDVVTLLKSRDPTPDDKHWFYIAAARHRKKLIIMQ*NAFSAACELGQNYHPIDDWLGHWLGAAFPKKVKFAILR  249
                LPCEVRG+TF+VVTLLKSRDPTP+D+HWFYIAA RHR+KLIIMQ*+AFSAACELG+N++ ID WLGHW  AAF ++VK  + R
Subject   7109  LPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFR  7357

Range 2: 7110 to 7358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 61/83(73%) 0/83(0%) Plus/Plus
Query        2  FLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSG  250
                +LV+ EV  L    +*NQ I+P  I TG TLL QD  RN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSG
Subject   7110  YLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSG  7358

Range 3: 7112 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 56/82(68%) 0/82(0%) Minus/Minus
Query        4  PEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTR  249
                PE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFL +SC SNV+PV I+ G I *FQ   ++K  TS  TR
Subject   7112  PE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR  7357

Range 4: 7111 to 7356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 57/82(70%) 0/82(0%) Minus/Minus
Query        3  LSMANLTFLGNAAPSQCPSQSSMG**FWPNSQAAEKAFHCMMINFFLCLAAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQG  248
                L+  +LT   NAA +QCPSQ SM   F PNSQAAEKA +CM+INF LCL AAM*NQCLSSGVGSLDF +VTT  V P TSQG
Subject   7111  LNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQG  7356

Range 5: 7156 to 7344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 46/63(73%) 0/63(0%) Plus/Plus
Query       48  EIKGSDPR**ALVLHCCSKT*KEIDHHAVKCLFSSLRIGPKLSPH*RLAWALAWCCIS*ESQI  236
                EIK S+PR *ALVLHCC KT  EID+HAV+CLFSSLRIG K   H*+LAWAL  CCI * SQI
Subject   7156  EIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQI  7344

Range 6: 7155 to 7358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 45/68(66%) 0/68(0%) Minus/Minus
Query       47  P*VWQI*LS*EMQHQANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRGSDPLIS  250
                P*+  I*L  +MQH+ NAQAN QW   F PIRRLLKRH TA* SIS  VL QQC+TSAY  G D LIS
Subject   7155  P*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7358

Nucleotide Sequence (145 letters)

Query ID:ds2015-149_49
Query definition:No definition line
Query length:122
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 35 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
15
30
45
60
75
90
105
120
135
145

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 6

Range 1: 1328 to 1471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 46/48(96%) 0/48(0%) Plus/Plus
Query        2  VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH  145
                VDLAAAHNSDFKLP EVRGATFDVVTLLKSRDPT DDKHWFYIAATRH
Subject   1328  VDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRH  1471

Range 2: 1327 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        1  CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST  144
                CLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST
Subject   1327  CLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST  1470

Range 3: 1328 to 1471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.9 bits(216) 0.0 44/48(92%) 0/48(0%) Minus/Minus
Query        2  MSCCSNVEPVLIIGGWIP*FQ*GNNIKCSTSYLSRKFEIGIMRGC*IN  145
                MSCCSNVEPVLIIGG IP*FQ*GNNIKCSTSYL+RKFEIGIMR  *IN
Subject   1328  MSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*IN  1471

Range 4: 1329 to 1469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 43/47(91%) 0/47(0%) Plus/Plus
Query        3  LI*QPRIIPISNFLERYEVLHLMLLPY*NQGIQPPMISTGSTLLQQD  143
                LI*+ RIIPISNFL RYEVLHLMLLPY*NQGI+PPMISTGSTLLQQD
Subject   1329  LI*RLRIIPISNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQD  1469

Range 5: 1329 to 1469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 42/47(89%) 0/47(0%) Minus/Minus
Query        3  VLLQQCRTSAYHRGLDPLISIR*QHQM*HLVPLKEV*NRNYARLLNQ  143
                VLLQQCRTSAYHR  DPLISIR*QHQM*HLVP KEV*NRNYA+ LNQ
Subject   1329  VLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQ  1469

Range 6: 1360 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 34/37(92%) 0/37(0%) Plus/Plus
Query       34  QTSLRGTRCYI*CCYLIEIKGSNPR**ALVLHCCNKT  144
                QTSL GTRCYI*CCYLIEIKGS+ R**ALVLHCCNKT
Subject   1360  QTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT  1470

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6

Range 1: 7072 to 7215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 46/48(96%) 0/48(0%) Plus/Plus
Query        2  VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH  145
                VDLAAAHNSDFKLP EVRGATFDVVTLLKSRDPT DDKHWFYIAATRH
Subject   7072  VDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRH  7215

Range 2: 7071 to 7214 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 47/48(98%) 0/48(0%) Minus/Minus
Query        1  CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST  144
                CLVAAM*NQCLSS VGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST
Subject   7071  CLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST  7214

Range 3: 7072 to 7215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.9 bits(203) 0.0 42/48(88%) 0/48(0%) Minus/Minus
Query        2  MSCCSNVEPVLIIGGWIP*FQ*GNNIKCSTSYLSRKFEIGIMRGC*IN  145
                MSCCSNVEPVLIIGG IP*FQ*GNNIKCSTS+L+RKFEI IMR  *IN
Subject   7072  MSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*IN  7215

Range 4: 7073 to 7213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 40/47(85%) 0/47(0%) Minus/Minus
Query        3  VLLQQCRTSAYHRGLDPLISIR*QHQM*HLVPLKEV*NRNYARLLNQ  143
                VLLQQCRTSAYHR  DPLISIR*QHQM*HL P KEV*N+NYA+ LNQ
Subject   7073  VLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQ  7213

Range 5: 7073 to 7213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 41/47(87%) 0/47(0%) Plus/Plus
Query        3  LI*QPRIIPISNFLERYEVLHLMLLPY*NQGIQPPMISTGSTLLQQD  143
                LI*+ RII ISNFL R EVLHLMLLPY*NQGI+PPMISTGSTLLQQD
Subject   7073  LI*RLRIILISNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLLQQD  7213

Range 6: 7104 to 7214 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 33/37(89%) 0/37(0%) Plus/Plus
Query       34  QTSLRGTRCYI*CCYLIEIKGSNPR**ALVLHCCNKT  144
                QTSL G RCYI*CCYLIEIKGS+ R**ALVLHCCNKT
Subject   7104  QTSL*GARCYI*CCYLIEIKGSDLR**ALVLHCCNKT  7214

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 3

Range 1: 1328 to 1471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 43/48(90%) 0/48(0%) Plus/Plus
Query        2  VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH  145
                VDLA AHNSDFKLP EVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRH
Subject   1328  VDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRH  1471

Range 2: 1327 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 42/48(88%) 0/48(0%) Minus/Minus
Query        1  CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST  144
                CLVAA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+ST
Subject   1327  CLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARST  1470

Range 3: 1331 to 1471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 23/47(49%) 0/47(0%) Minus/Minus
Query        5  MSCCSNVEPVLIIGGWIP*FQ*GNNIKCSTSYLSRKFEIGIMRGC*I  145
                M CC +VEP+LI   W+P  Q*  N+KC T +L+ + E+GI+R C*+
Subject   1331  MPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*V  1471

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1

Sequence ID: AB277788.1 Length: 2876 Number of Matches: 3

Range 1: 1328 to 1471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 43/48(90%) 0/48(0%) Plus/Plus
Query        2  VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH  145
                VDLA AHNSDFKLP EVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRH
Subject   1328  VDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRH  1471

Range 2: 1327 to 1470 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 42/48(88%) 0/48(0%) Minus/Minus
Query        1  CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST  144
                CLVAA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+ST
Subject   1327  CLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARST  1470

Range 3: 1331 to 1471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 21/47(45%) 0/47(0%) Minus/Minus
Query        5  MSCCSNVEPVLIIGGWIP*FQ*GNNIKCSTSYLSRKFEIGIMRGC*I  145
                M C  NVEP+LI   WIP  Q* + +KC T + + + E+ I+  C*I
Subject   1331  MPCGCNVEPMLIFWSWIPGLQ*RHYVKC*TPHFAGQLEVRIVCNC*I  1471

Grapevine rupestris stem pitting associated virus isolate SK30, complete genome

Sequence ID: KX274277.1 Length: 8724 Number of Matches: 3

Range 1: 7072 to 7215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 43/48(90%) 0/48(0%) Plus/Plus
Query        2  VDLAAAHNSDFKLP*EVRGATFDVVTLLKSRDPTPDDKHWFYIAATRH  145
                VDLA AHNSDFKLP EVRG+TFDVVTLLKSRDPTP+DKHWFY+AATRH
Subject   7072  VDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRH  7215

Range 2: 7071 to 7214 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 42/48(88%) 0/48(0%) Minus/Minus
Query        1  CLVAAM*NQCLSSGVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKST  144
                CLVAA *NQCLSSGVGSLDFN VTTSNV PRTSQG+LKSELCA A+ST
Subject   7071  CLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARST  7214

Range 3: 7075 to 7215 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 24/47(51%) 0/47(0%) Minus/Minus
Query        5  MSCCSNVEPVLIIGGWIP*FQ*GNNIKCSTSYLSRKFEIGIMRGC*I  145
                M CC +VEP+LI   W+P  Q*  N+KC T +L+ + E+GI+R C*I
Subject   7075  MPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*I  7215