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Queries

Nucleotide Sequence (459 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
46
92
138
184
230
276
322
368
414
459

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
298.0 901.4 56% 3.535e-80 42% NC_001948
123.0 259.3 46% 2.579e-42 51% NC_008020
112.0 242.4 40% 4.442e-38 55% NC_013006
112.4 280.1 53% 2.368e-38 42% NC_010538
109.7 271.4 26% 8.332e-38 33% NC_026248

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 6326 to 6736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
298.0 bits(644) 0.0 124/137(91%) 0/137(0%) Minus/Plus
Query       48  IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA  458
                I+ERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+FIAFTA
Subject   6326  IWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTA  6736

Range 2: 6332 to 6730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 70/133(53%) 0/133(0%) Plus/Minus
Query       54  KGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSL  452
                + YE L+L +   Y*TTFTTTR+ MN+ WK +H  NT+KLK  Q FN*+IHN   MPNT*GLI SFK   N*A HL+L+ + E +T+++  +F   HHFN  L+Q V IG L  I++N +LQV H  SNA  L
Subject   6332  ESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPL  6730

Range 3: 6331 to 6603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
143.6 bits(307) 0.0 71/91(78%) 0/91(0%) Plus/Minus
Query      181  DKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS  453
                D ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS  A*+TSIA*LS+QFSRLPIS AM I S
Subject   6331  DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRS  6603

Range 4: 6342 to 6731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.0 bits(249) 0.0 69/130(53%) 0/130(0%) Plus/Minus
Query       53  *RL*NSRPQ**VLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQC  442
                *+L*NS P+    LLNYFYHYQ  YE  LEI*A  KH QTQ  T L*L+YS* S++AK+LRPN *LQ   KLS SS A  *    H+ +   L   SSFQ    P   HR P  H+ Q +SPG P   QC
Subject   6342  *KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QC  6731

Range 5: 6337 to 6624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 49/96(51%) 0/96(0%) Minus/Plus
Query      160  NLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGC  447
                ++HC  +G PGEL+* LC+ G+LC+  GR  +*ND+   S   L LC +   + A DE+LNF  +*SY LGLK LA  +YYE* S*S V +*VC C
Subject   6337  DMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRC  6624

Range 6: 6676 to 6768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 13/31(42%) 0/31(0%) Minus/Plus
Query       16  *K*FNKRTYH*GREFHSLYGRAFPKHTQHNR  108
                *K*FNK     G EFHS + R   +   H +
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSRQP*SHRK  6768

Range 7: 6339 to 6572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 39/78(50%) 0/78(0%) Minus/Plus
Query      212  FALLVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  445
                +ALL +W TWR  L  M+ R PM T W S  LK** ++K +    V  S    S R* AQF   LKL IRP*VFG++*
Subject   6339  YALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*  6572

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 3

Range 1: 5868 to 6116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 51/83(61%) 0/83(0%) Minus/Plus
Query      210  IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI  458
                + ER+CIA+E  NL NCIDNYAIEVSYAY+LGEL++  MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ +   GV+
Subject   5868  VLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM  6116

Range 2: 6153 to 6311 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 32/53(60%) 0/53(0%) Minus/Plus
Query       48  MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA  206
                M+ LV     F F  V SVLR PV+ H VPG+GKS+LIRELI  D  FIAFTA
Subject   6153  MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTA  6311

Range 3: 5885 to 6115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 39/77(51%) 0/77(0%) Plus/Minus
Query      211  ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAM  441
                ITP +  +   I+ N  EIE    CLF T   TQL  AS SSSFI    NSPSL A*+TS+A*LS+Q  +L +S A+
Subject   5885  ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAI  6115

Kalanchoe latent virus, complete genome

Sequence ID: Length: 8517 Number of Matches: 3

Range 1: 5832 to 6044 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 39/71(55%) 0/71(0%) Minus/Plus
Query      246  IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA  458
                ++ER+CIA+E  NL NCIDNYAIEV+YAY++GE ++  MNEEEV+A YNCVR +++NKH ++  +  ++E+
Subject   5832  VFERLCIAKETNNLVNCIDNYAIEVAYAYQMGEKAVARMNEEEVDAFYNCVRVIIKNKHLLKSDVRLIYES  6044

Range 2: 6080 to 6241 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 30/54(56%) 0/54(0%) Minus/Plus
Query       51  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFT  212
                + M+ LV  LS ++FV + S +  P+VVHSVPG+GKSSLIR+LI  D  F AFT
Subject   6080  LYMDVLVNYLSKYKFVRLSSCITPPIVVHSVPGAGKSSLIRDLINSDCRFSAFT  6241

Range 3: 5837 to 6007 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 37/57(65%) 0/57(0%) Plus/Minus
Query      283  CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS  453
                CLFL    TQL* ASTSSSF+ +   SP  *A  TSIA*LSMQF+RL +S AMQ LS
Subject   5837  CLFLMMTLTQL*NASTSSSFMRATAFSPIW*AYATSIA*LSMQFTRLLVSFAMQSLS  6007

Hop mosaic virus, complete genome

Sequence ID: Length: 8550 Number of Matches: 4

Range 1: 5732 to 5941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 41/70(59%) 0/70(0%) Minus/Plus
Query      249  IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  458
                + ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++  M+EEEV A YNCVR ++RNKH ++  + G++E
Subject   5732  VLERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE  5941

Range 2: 6013 to 6180 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 29/56(52%) 0/56(0%) Minus/Plus
Query       48  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA  215
                +I M+ +V  L  F F  + + L  P+VVH VPG+GKS+LIRELI  D  F+AFTA
Subject   6013  LIPMDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTA  6180

Range 3: 5737 to 5943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 37/69(54%) 0/69(0%) Plus/Minus
Query      247  ASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS  453
                +S  P       CLFL   RTQL* A TSSS +     SP  *A  TSIA*LSMQ  RL  S AM ILS
Subject   5737  SS*TPRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILS  5943

Range 4: 5738 to 5887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 21/50(42%) 0/50(0%) Plus/Minus
Query      303  PHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSL  452
                P+TVV   NFL  H  +  L + VGI +L CI+I+A++Q+    S+A+ L
Subject   5738  PYTVVKGANFLLTHAIDRLLTKRVGIRHLYCIIIDAIVQIIQLHSDAHPL  5887

Yam latent virus isolate SG1, complete genome

Sequence ID: Length: 8531 Number of Matches: 4

Range 1: 5720 to 5929 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 40/70(57%) 0/70(0%) Minus/Plus
Query      249  IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  458
                + ER+CIA E+ NL NCIDNY+IEV +AY+LGE ++  M+EEEV A YNCVR +VRNKH ++  +  +FE
Subject   5720  VLERMCIAMELNNLANCIDNYSIEVGFAYKLGERAVNRMDEEEVSAFYNCVRIIVRNKHLLKSEVRSVFE  5929

Range 2: 5985 to 6152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 31/56(55%) 0/56(0%) Minus/Plus
Query       48  VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA  215
                +I M+ LVK L  + FV + S L  PVV+H VPG+GKS+LIRELI  D  F+ FTA
Subject   5985  LI*MDVLVKYLCKYNFVRLSSKLASPVVIHCVPGAGKSTLIRELIRADTRFVGFTA  6152

Range 3: 5725 to 5931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 38/69(55%) 0/69(0%) Plus/Minus
Query      247  ASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS  453
                +SN         CLF T  RTQL* A TSSS I+    SPSL*A  TS+ *LSMQ +RL  S AM ILS
Subject   5725  SSNTERTSDFKRCLFRTMMRTQL*NALTSSSSILFTARSPSL*ANPTSME*LSMQLARLFNSIAMHILS  5931

Range 4: 5988 to 6152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 18/55(33%) 0/55(0%) Plus/Minus
Query       48  GRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  212
                GRK +E+ + SD F   +    TRN +N + +      THK+   Q  +  IH+N
Subject   5988  GRKTHESGICSD*FPNQSALACTRNTVNYHRRR*LTRQTHKVVFTQILHQNIHSN  6152

Nucleotide Sequence (469 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
469

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
340.6 1069.8 25% 5.403e-93 48% NC_001948
160.5 160.5 33% 8.728e-39 43% NC_029087
91.3 173.5 33% 1.07e-36 45% NC_029089
90.4 168.5 28% 3.397e-35 50% NC_017859
88.6 165.7 28% 2.238e-34 50% NC_005343

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 4022 to 4486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.6 bits(737) 0.0 139/155(90%) 0/155(0%) Minus/Plus
Query        1  GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ  465
                GLTGVISDEKF+D+KPWLSGIST++IK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDDSCKVAKAG+SK+EGWDVVTFE FLRK+  LKAGHCVIFDEVQLFPPGY+D+CLL IRSDAFISLAGDPCQSTYD+Q
Subject   4022  GLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQ  4486

Range 2: 4021 to 4479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.5 bits(381) 0.0 118/153(77%) 0/153(0%) Plus/Minus
Query        8  SYVL*QGSPASEMKASLRMVNRQXXXXXXXXXXXXXKITQWPAFRFSIFLRNSSKVTTSQPSLFDLPAFATXXXXXXXXXXXXXXARALLGETKVTNLPSDLFIXXXXXXXXXXXXXXSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKP  466
                SYVL* GSPASEMKASLR++++  S  PGGN+ TSSKITQWPAF  + FLR +SKVTTS PS FDLPA ATLQLSSISRS LIE A+A LGETKVTNLPSDLF+KLLYKKL PAP VPSTTVNS  LI  VDIPES G  SLNFSSLITPV+P
Subject   4021  SYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRP  4479

Range 3: 4028 to 4486 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 79/153(52%) 0/153(0%) Plus/Minus
Query        1  LGVICALTRVTGE*NESITPYG*QANVNIAWRKQLNLIKNHTMARLQIFNLSEKLFKGHNVPTFSL*FACLCHFATIIHLQVPFN*IG*SPSG*NKGYEFTFRPLHKALVQKAFARSKSSKHDC*FSRFDI*S*YS*KPWLGIIKFLITYHTS  459
                L VICALT +T +*NESIT Y  QA ++++ RKQL+LIKNHT+A LQ  N S++  K + +P F L*  C  +FA IIH ++ F+*I *S SG NKGYEFT RP H+ LVQ+     K +KHD  F   +I S Y+ KP   I + LITY+ S
Subject   4028  LRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS  4486

Range 4: 4023 to 4481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 80/153(52%) 0/153(0%) Minus/Plus
Query        6  A*LV**VMRNLMIPSHGFQEYQLQISNLEN*QSCLELLERAKAFCTRAL*RGLKVNS*PLFHPEGL*PIQLKGTWRWMIVAKWQRQANQREKVGTL*PLKSFSERLKI*RRAIV*FLMRFSCFLQAMLTFAC*PYGVMLSFHSPVTLVKAHMT  464
                A*L  *VMR+ ++ + GF  Y L I +  N* SCL  L   +  CTR  *+GL+VNS*PLF P+ L* IQ K   +WMI AK  +Q  QR K G  * L+   E+L+ *R A V*FLMR SCFL     +AC  Y VMLSFH  V  VKAHMT
Subject   4023  A*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMT  4481

Range 5: 4027 to 4479 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.0 bits(262) 0.0 72/151(48%) 0/151(0%) Minus/Plus
Query        8  DWCDK**EI**FQAMAFRNINFKYQISRINSRAWNFWSGQKLFVQELYEEV*R*IRNLCFTQKGSSQFN*KGPGDG**LQSGKGRQIKERRLGRCDL*RVSQKD*KSEGGPLCDF**GSAVSSRLC*RLPVNHTE*CFHFTRR*PLSKHI*  460
                +W  K**E+ * + +AF  I + Y    I+ RAW  W  ++  VQE +E+V* *IRNLCF+Q   S+FN K   +G**LQS   R +KE R+G  + *    K  + EG PLCDF**G  VSS +   +   +T *CFHFT  * +SKHI*
Subject   4027  NWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*  4479

Range 6: 4119 to 4259 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 27/47(57%) 0/47(0%) Plus/Minus
Query      228  YHPSPGPF*LNWLEPFWVKQRLRIYLQTXXXXXCTKSFCPLQKFQAR  368
                YHP    F*LN L+  W KQRLRIY QT S*+SCT++    Q +QAR
Subject   4119  YHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQAR  4259

Range 7: 4425 to 4478 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 13/18(72%) 0/18(0%) Plus/Minus
Query        9  HMCFDKGHRRVK*KHHSV  62
                HMCFD  H++VK*KHH V
Subject   4425  HMCFDMDHQQVK*KHHYV  4478

Range 8: 4314 to 4394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 16/27(59%) 0/27(0%) Plus/Minus
Query       93  EETAEPHQKSHNGPPSDFQSF*ETLQR  173
                EET  PHQKSH+G PS  Q F*   Q+
Subject   4314  EETTGPHQKSHSGQPSILQLF*GKPQK  4394

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 1

Range 1: 3562 to 4026 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 67/155(43%) 0/155(0%) Minus/Plus
Query        1  GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ  465
                G TG IS   +ND       +  S+  +R L V+LGTFGAGKS L+K FM  ++G+ +T+VSPRR LA     D+++D   +     K++ + W V TFE+FL +   ++ G  VI DEVQL+PPGY+D+ L  +     I L GDPCQS YD++
Subject   3562  GQTGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSE  4026

Elderberry carlavirus E isolate EBCVE, complete genome

Sequence ID: Length: 8540 Number of Matches: 2

Range 1: 3437 to 3682 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 40/82(49%) 0/82(0%) Minus/Plus
Query      220  GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCK  465
                G TG IS E FND       +S  N  SR L ++LGTFGAGKS L+K FM+ ++G+ VT+VSPRR LA+    D+E+    K
Subject   3437  GRTGAISSELFNDKPSLEPLVSAGNTGSRTLHIILGTFGAGKSTLFKKFMQANKGRCVTYVSPRRGLADEFAADMELHKRSK  3682

Range 2: 3671 to 3892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 33/74(45%) 0/74(0%) Minus/Plus
Query        1  KVAKAGKSKREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ  222
                K +K  +   + W V TFE FL   +    G  +I DE+QLFPPGYVD+    +  D  I L GDPCQS YD++
Subject   3671  KRSKGKRLASQNWAVFTFERFLEAAQLAGPGTAIIIDEIQLFPPGYVDLVCTLLARDMHIFLVGDPCQSDYDSE  3892

American hop latent virus, complete genome

Sequence ID: Length: 8601 Number of Matches: 2

Range 1: 3769 to 3960 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 32/64(50%) 0/64(0%) Minus/Plus
Query        1  EGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ  192
                + W V TFE+F+  I+++ +G  VI DE+QL+PPGY+D+CL  +  D  I L GDPCQS YD++
Subject   3769  QNWRVNTFEKFIAVIKSIGSGAAVIIDEIQLYPPGYLDICLALLERDVHIFLVGDPCQSDYDSE  3960

Range 2: 3502 to 3708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 35/69(51%) 0/69(0%) Minus/Plus
Query      259  GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALAN  465
                G TG IS   FND       +   +  SR + VVLGTFGAGKS L+K FM+ ++GK V +VSPRR LA+
Subject   3502  GRTGAISSGLFNDKASLEPDVHNGDFSSRAVCVVLGTFGAGKSTLFKKFMQANKGKCVHYVSPRRGLAD  3708

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 2

Range 1: 3781 to 3978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 34/66(52%) 0/66(0%) Minus/Plus
Query        1  KREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ  198
                K   W+V TFE FL+     K G  VI DEVQL+PPGY+D+ L  +RSD  + + GDPCQS YD++
Subject   3781  KSANWNVFTFEVFLKMAAKSKPGQVVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQSDYDSE  3978

Range 2: 3583 to 3780 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 33/66(50%) 0/66(0%) Minus/Plus
Query      187  SRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKREG  384
                +RE+T VLGTFGAGKS L+K F+ +S G+ VTFVSPR+ALA ++K ++  +      K    KR+G
Subject   3583  AREVTAVLGTFGAGKSRLFKEFISKSPGRCVTFVSPRKALAEAVKTEIFGESREGKKKGRNGKRDG  3780

Nucleotide Sequence (391 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
40
80
120
160
200
240
280
320
360
391

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
275.5 1078.0 48% 1.584e-73 56% NC_001948
88.6 88.6 30% 2.963e-17 34% NC_001658
90.0 135.9 25% 1.143e-17 36% NC_003849
87.2 87.2 25% 7.683e-17 36% NC_004322
61.6 111.6 30% 1.912e-18 33% NC_009892

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 7897 to 8277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
275.5 bits(595) 0.0 115/127(91%) 0/127(0%) Plus/Plus
Query        9  GVFGEREGVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  389
                G+  +R+ +IENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI ES QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA
Subject   7897  GILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  8277

Range 2: 7923 to 8279 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.4 bits(466) 0.0 96/119(81%) 0/119(0%) Minus/Minus
Query       35  IAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSGMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSM  391
                +AGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPAISDLFRSQ GL PI+VDL ELPTSEQ RAIS+AT N +LS MPDSPNARI+SSIAPSS+T G+ TT SCF TS MSTVFE AFS+
Subject   7923  LAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSI  8279

Range 3: 7900 to 8277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 76/126(60%) 0/126(0%) Minus/Minus
Query       12  SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIALWYARLTECSNQLIYCTFIHNIRR*HNRLVLQYLPHVHSF*KSIFNDPLPFTKH  389
                S W PRLQMD+PHDFCIVHAKS    H PY  S F  + VT+ TL+NQG* L ATNIRA+ C IY ++KL A  YAR T+C+NQL+YCTFIH+I   H+R V Q LPHVH  *K I  +PL F K+
Subject   7900  SWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKN  8277

Range 4: 7998 to 8273 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 56/92(61%) 0/92(0%) Plus/Plus
Query      110  CYG*RCNR*VDSSIR*VWHTRERSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDST  385
                C+G*RCNR  DS I *+WH+ +R++*   RY T LL*CW*L ++N DW+ES+L*P+ + N W+ KG D+   ILHVLCKNRVE+PSGDGD+T
Subject   7998  CHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTT  8273

Range 5: 7929 to 7976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 9/16(56%) 0/16(0%) Plus/Plus
Query       41  KCSFKNCGHAGGIEAR  88
                +C+FK+ GH GG E R
Subject   7929  ECTFKDGGHEGGFETR  7976

Range 6: 7904 to 8278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 70/125(56%) 0/125(0%) Plus/Plus
Query       16  LVKGRGSLKMLFQKLWTCGRY*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPL  390
                L   RG  +M FQ+ WT GR+*+T    +  M WMKVQ* S*F H V+LA  +A +L   *I H  ALMLVA + QP*L RV  VT*   K L  *G+*    DFACTMQKSCG SIWRRG+H L
Subject   7904  LPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQL  8278

Range 7: 8027 to 8272 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 46/82(56%) 0/82(0%) Minus/Minus
Query      139  VESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRSLVCQTHRMLES  384
                V SPSPDG STRFLHSTCKI    S PL  Q F    GH+ DS QS L   SYQHQS+ V YL      R  +CQ H+M ES
Subject   8027  VVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES  8272

Range 8: 7937 to 7975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 8/13(62%) 0/13(0%) Minus/Minus
Query       49  RASIPPACPQFLK  87
                R S PP+CP  LK
Subject   7937  RVSKPPSCPPSLK  7975

Cassava common mosaic virus, complete genome

Sequence ID: Length: 6376 Number of Matches: 1

Range 1: 5639 to 5986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 40/116(34%) 0/116(0%) Plus/Plus
Query       42  NALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  389
                +ALS      E+ + +    S  V    A+  +   +    +P +     A+D+   C D GSS+ +T+ G SP   + R+ +AG +R+ TTLR+FC YYAKI+WN  ++  IPPA
Subject   5639  SALSTAPTDEELSRLDLKPASNLVASADALSAIAADWASLKVPTAQLMRHALDLVNFCFDSGSSKYTTVEGSSPTPTIPRAALAGAVRKHTTLRQFCRYYAKIIWNARVKANIPPA  5986

Plantago asiatica mosaic virus, complete genome

Sequence ID: Length: 6128 Number of Matches: 2

Range 1: 5430 to 5723 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 37/98(38%) 0/98(0%) Plus/Plus
Query       96  VLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  389
                V SP+V     +D +       G+P     + A+ +   C D GSS   TL G SP   ++ ++IAG+++  TTLR+FC +YAKI+WN  L   +PPA
Subject   5430  VSSPSVPTAQELDTITSGLTTLGVPTDSLLSHALALVNACFDAGSSSFVTLSGPSPTPTISLAQIAGVVKVTTTLRKFCRFYAKIIWNARLARNLPPA  5723

Range 2: 5429 to 5722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 35/98(36%) 0/98(0%) Minus/Minus
Query       95  AGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSGMPDSPNARINSSIAPSSITLGDST  388
                AGG   +R  FH I A*  QNLRRVV +L  PAI        GL P++V   E P S+     + A L+    G P      +  S + +  T G+ T
Subject   5429  AGGRFRARRAFHIILA*NRQNLRRVVVTLTTPAICAREMVGVGLGPLRVTNDEEPASKHALTRARAWLSSESVGTPRVVRPEVMVSSSCAVGTEGEET  5722

Tulip virus X, complete genome

Sequence ID: Length: 6056 Number of Matches: 1

Range 1: 5357 to 5650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 35/98(36%) 0/98(0%) Plus/Plus
Query       96  VLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  389
                V SP V     +D +       G+P     + A+ +   C D GSSQ +T+ G SP   +  +++AG+++  TTLR+FC +YAK++WN  L    PPA
Subject   5357  VSSPAVPTPAELDTIAAGLTTLGVPADSLISHALALVNACFDAGSSQFTTISGPSPTPTITLAQLAGVVKVSTTLRKFCRFYAKLIWNARLSRNRPPA  5650

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 8261 to 8533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 30/91(33%) 0/91(0%) Plus/Plus
Query       33  VIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR  305
                V+ + +SK + +R++   +    + +V  E  I ++   F + G+       V + IARHC+DVGSS +S LIG  P  D+   E+A II+
Subject   8261  VVGSGMSKRLSIRDLAAIDYKPQAGSVASEEKISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK  8533

Range 2: 8549 to 8623 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 18/25(72%) 0/25(0%) Plus/Plus
Query      315  TLRRFCMYYAKIVWNIHLETGIPPA  389
                TLR+FC YYAK+VWN+ LET  PPA
Subject   8549  TLRQFCAYYAKMVWNLMLETQTPPA  8623

Nucleotide Sequence (628 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
63
126
189
252
315
378
441
504
567
628

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
466.1 1582.5 23% 1.286e-130 50% NC_001948
210.5 298.3 33% 1.193e-53 32% NC_029087
154.1 317.7 29% 6.75e-54 47% NC_009892
152.3 337.1 37% 2.165e-52 43% NC_014821
150.4 427.2 37% 5.574e-52 29% NC_003462

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 4037 to 4663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
466.1 bits(1011) 0.0 191/209(91%) 0/209(0%) Plus/Plus
Query        1  ISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAPF  627
                ISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYA F
Subject   4037  ISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIF  4663

Range 2: 4039 to 4662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.1 bits(749) 0.0 167/208(80%) 0/208(0%) Minus/Minus
Query        3  KGA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSL  626
                K A*SAKAAV+EPFLK  G+L+SNIGFTNL LS LYLY  PSS+L+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI  +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA  TL  SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSL
Subject   4039  KIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSL  4662

Range 3: 4301 to 4654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 68/118(58%) 0/118(0%) Minus/Minus
Query      265  VISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKNHAMTSL*ACNFPKEDFKGNDIP  618
                +IS+SGSH ALFEVT  S* +H ++KPPA  V+PI  + +Q +YVTL S QN  I LR+ICALT ITSK +ES+T  NK+ *IDV+RR+ L+ IKNH + SL +CNF KE+ K   IP
Subject   4301  IISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP  4654

Range 4: 4037 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 38/73(52%) 0/73(0%) Minus/Minus
Query        1  IHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCSKHNCQFSLFDVRS*HSSKPRL*IVKFLITY  219
                IHF++ FD*IC*S    +K Y+F+ R  HE LV ETL SPKC+KH+ QF   ++ S ++ KPR  I + LITY
Subject   4037  IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITY  4255

Range 5: 4279 to 4653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 63/125(50%) 0/125(0%) Plus/Plus
Query      243  RQIKEGGLGCRYL*SLP*ESYRPKGWSLRDF**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEVARRKVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*L  617
                R +KEG +GC   *  P*+S R +GW L DF**   + SW+HRSM + Y+ * FH +CW*S+SKHI* +K    FG * E*H   A  + +*V   + EVC+ +V  K  + LQKGL DCRF *L
Subject   4279  R*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*L  4653

Range 6: 4039 to 4239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 34/67(51%) 0/67(0%) Plus/Plus
Query        3  K**EI*RFKALACWSVNF*HQTKRIDSCAWNIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQK  203
                K**E+   K LA W + +*+  K ID  AW IWGW+EF +QE HE++*  I N+C +    SKFNQK
Subject   4039  K**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK  4239

Range 7: 4350 to 4652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 51/101(50%) 0/101(0%) Minus/Minus
Query      314  NQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTFLRATSICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQKSRNDQP  616
                NQ+KRQS SPF*S   +L +T   QTS     TY    +A  +CHS Q PK    F +HMCFD DHQQ +*K H  *   IDRC QE     HQKS + QP
Subject   4350  NQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP  4652

Range 8: 4038 to 4256 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 38/73(52%) 0/73(0%) Minus/Minus
Query        2  HPFPGPF*LNLLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMFQAQLSILFV*CQKLTLQQAKALNR*ISHHL  220
                HPF   F*LNLL+    +Q L+I+ Q  S*+SC  NS QPQM+QA+ SI   * Q    Q+AK L+ * SHHL
Subject   4038  HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL  4256

Range 9: 4467 to 4628 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.4 bits(143) 0.0 31/54(57%) 0/54(0%) Plus/Plus
Query      431  KAHMILKKIELFWVLNRVTY*GCSKESHIGTTWRAGGL*IRCLIQDYPVTSKRA  592
                KAHM  K+I  FW L+RVTY  C +   IG T +AGGL* +C  QD  VTSKRA
Subject   4467  KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRA  4628

Range 10: 4038 to 4190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 27/51(53%) 0/51(0%) Plus/Plus
Query        2  *VMRNLTIQSLGLLECQLLTSNKEN*QLCLEHLGLERVSYTRAS*RDLKEN  154
                *VMR+  +Q+LG L   LL  ++ N*  CL HLGL RVS TR S*+ L+ N
Subject   4038  *VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN  4190

Range 11: 4224 to 4412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 34/63(54%) 0/63(0%) Plus/Plus
Query      188  QIQSKGTWKWMKSVXXXXXXXXXXXXGMSLPLKSSLGKLQA*RLVIA*FLMKFSYSLLVTSIY  376
                QIQSK   KWM + +  +Q  QRR+ GM   L+ SL KLQ *RL   *FLM+ S  LL TSIY
Subject   4224  QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY  4412

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 3

Range 1: 3577 to 4173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.5 bits(453) 0.0 90/199(45%) 0/199(0%) Plus/Plus
Query        1  ISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSM  597
                IS   +ND       V  S    R L V+LGTFGAGKS L+K FM  ++G+ +T+VSPRR LA     D+++D   +     K++ + W V TFE FL +   ++ G  VI DEVQL+PPGY+DL L ++     I L GDPCQS YDS+KDR     E SDI ++LE K Y YN+ SRRFVN  ++ RLPC   +  +
Subject   3577  ISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPCTLDESKL  4173

Range 2: 3840 to 4157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 44/106(42%) 0/106(0%) Minus/Minus
Query      264  KLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ  581
                ++ G   S + FT  RL  L LY   SS L +SL S  K+ LSF  S  L  GSP+++M        R RS  PGG S TSS IT  P    +   R  SKV T Q
Subject   3840  RVHGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ  4157

Range 3: 3673 to 3867 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 21/65(32%) 0/65(0%) Minus/Minus
Query       97  EDFKGNDIPXXXXXXXXXXXXXXFIHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPK  291
                E  +  D+P L L F         +   V  + +C*+PPR    Y  +F S+HE L *  L   K
Subject   3673  EFLESADLPVLALSFGLTFPPAHAVQLHVRGEFLC*TPPRAHVRYAPTFVSMHEFLK*SALPRSK  3867

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 4208 to 4555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 62/116(53%) 0/116(0%) Plus/Plus
Query      271  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADY  618
                V+TFE+FL  +  +K GH VI DE+QLFPPGY+DL L+   SD  + LAGDPCQS YDS+ DR +     SDI+ +L GKSYRYN+ S+RF NP+F SRLPC+     +T    +Y
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEY  4555

Range 2: 3995 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 32/68(47%) 0/68(0%) Plus/Plus
Query       55  SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKK  258
                ++I +R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K +  GK  K
Subject   3995  ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 3: 4207 to 4365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 26/53(49%) 0/53(0%) Minus/Minus
Query      270  QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  428
                QGSPAR    S  +  R RS *PGG S* SS IT  P       +R +SKV+T
Subject   4207  QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST  4365

Range 4: 4030 to 4128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/33(55%) 0/33(0%) Minus/Minus
Query       90  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVP  188
                AR  LGET V  FP D  M  L R L P P VP
Subject   4030  ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP  4128

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 5

Range 1: 4363 to 4710 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 58/116(50%) 0/116(0%) Plus/Plus
Query      271  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADY  618
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R+L G++Y++N+ S+RF NP+F  RLPCN  K  +T    +Y
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEY  4710

Range 2: 4153 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 29/50(58%) 0/50(0%) Plus/Plus
Query       61  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  210
                +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4153  VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 3: 4161 to 4280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/40(50%) 0/40(0%) Minus/Minus
Query       69  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  188
                AR  LGET V  FP D  M  L R+L P P VP    N L
Subject   4161  ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL  4280

Range 4: 4506 to 4706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 29/67(43%) 0/67(0%) Minus/Minus
Query      414  SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA  614
                S+ + V     KL G+L +  GF N  L  L L   P + L MSL    KI LS   S  L*QGSPA
Subject   4506  SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA  4706

Range 5: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 15/35(43%) 0/35(0%) Minus/Minus
Query      270  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  374
                +S+ PGG S* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 7

Range 1: 4359 to 4706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 58/116(50%) 0/116(0%) Plus/Plus
Query      271  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADY  618
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G+SY++N+ S+RF NP+F  RLPCN  K  +T    +Y
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEY  4706

Range 2: 4149 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 29/50(58%) 0/50(0%) Plus/Plus
Query       61  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  210
                + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4149  VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 3: 4502 to 4702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 31/67(46%) 0/67(0%) Minus/Minus
Query      414  SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA  614
                S+ + V    L+LQGNL  N GF NL L  L L   P   L +SL    K+ LS  +S  L*QGSPA
Subject   4502  SSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA  4702

Range 4: 4157 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/36(50%) 0/36(0%) Minus/Minus
Query       69  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  176
                LGET V  FP D  M  L ++LFP PNVP   ++ L
Subject   4157  LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL  4264

Range 5: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 16/35(46%) 0/35(0%) Minus/Minus
Query      270  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  374
                +S+*PGG S* SS  T *P+          SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Range 6: 4359 to 4688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 32/110(29%) 0/110(0%) Minus/Minus
Query      271  SHGALFEVTG*S*IKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKNHAMTSL*ACNFPKEDFKGND  600
                S   L EV   S +KH I +P    +  +    E    +T  ++++  I   +I  LTR+TS  +  +    K   I +  R+ LNFI ++++T L A     E FK  D
Subject   4359  SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD  4688

Range 7: 4149 to 4268 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 21/40(52%) 0/40(0%) Minus/Minus
Query       61  PPR*DKCYKFSFRSLHEALV*ETLSSPKCSKHNCQFSLFD  180
                PP *DK Y FS   L+E L * TLS+ + SK++ QF L D
Subject   4149  PPW*DKSYGFSRGLLNELLE*GTLSASERSKNHYQFPLMD  4268

Nucleotide Sequence (337 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
337

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 3326 to 3658 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.3 bits(494) 0.0 92/111(83%) 0/111(0%) Minus/Plus
Query        3  STDGLALKAGIRSFVESESLENPSMSAQTVLRQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD  335
                STDGLALKAGIRSFVESE L +P +SA  + +QL +NAYAENEMIALFCIRHHVR ++ITPEYEVSWKFG+ EWPLCGILCL+SNHFQP APLNGCMITAIASALGRREVD
Subject   3326  STDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVD  3658

Range 2: 3325 to 3660 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.1 bits(391) 0.0 82/112(73%) 0/112(0%) Plus/Minus
Query        1  TSTSRLPSAEAMAVIMQPLRGAQG*K*FDCKHKIPHRGHSLSPNFQLTSYSGVIIISLT*CLMQNKAIISFSA*AFLLSCLKTVWADIDGFSRDSLSTKERMPAFRASPSVL  336
                TSTSRLPSAEAMAVIMQP  GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LT C MQN AIISFSA*AF  +CL+   A+  G ++ SLSTK+R+PAFRASPSVL
Subject   3325  TSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVL  3660

Range 3: 3334 to 3660 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 46/109(42%) 0/109(0%) Minus/Plus
Query        1  WACSESRHTFFR*K*IS*KSIYVSPNRFKAAQ*KCLCRERNDSLILH*ASCEADDYYSRI*GELEVWR*RVASVWNLMLAVKSFSTLGPS*WLHDYSHCLRAWQT*SGC  327
                W C + R++ FR +*   KS   SP+ F     +CLCRE +D +ILH A  +A   ++RI*  LE+    VA +WN +  +KS  T+ P+ WLHD+SHC   W+ *S C
Subject   3334  WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*C  3660

Range 4: 3359 to 3658 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 43/100(43%) 0/100(0%) Plus/Minus
Query        3  IHFTSAKRGGNGCNHAAIKRGPRLKMI*LQA*DSTQRPLAISKLPTHLIFWSNNHQPHMMPNAE*GYHFVLCISIFTELP*NGLG*HRWIFKRFTFNERT  302
                I+FT +K   NGC+HA I+ G  L++I* +A +ST  PL   + PT+ IFW ++++P+++PNAE*  H +L ISI  +L  N  G*  W ++  T +ER+
Subject   3359  INFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERS  3658

Range 5: 3363 to 3659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 42/99(42%) 0/99(0%) Plus/Minus
Query        2  HPLHVCQARRQWL*SCSH*EGPKVENDLTASIRFHTEATRYLQTSNSPHILE**SSASHDA*CRIRLSFRSLHKHFY*AALKRFGLT*MDFQEIHFQRK  298
                H LH  Q  +QWL*SC+H  G  V +DL     FH  AT   + SN  HIL *   A   A CRI  S  S HKH      K  GL  +D    H  RK
Subject   3363  HQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRK  3659

Range 6: 3333 to 3590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 34/86(40%) 0/86(0%) Minus/Plus
Query       71  MGLL*KQAYVLSLKVNLLKIHLCQPKPF*GSSVKMLMQRTK**PYSALGIM*G**LLLQNMR*VGSLEIASGLCVESYACSQIIFN  328
                M L *+  + LS +V+   + + QP+ F  +  +MLM R +*  YSA G  *G *   QNM+ VG+    SG  VE +A +QI  N
Subject   3333  MDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSN  3590

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 3320 to 3565 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 35/82(43%) 0/82(0%) Minus/Plus
Query        3  VLRQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD  248
                +LRQ+S + +AE E +A FC  + ++L +++    V+W F  ++      L  Q NHF P  P+NGC++ AIASALGRRE+D
Subject   3320  LLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREID  3565

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 3472 to 3711 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/80(46%) 0/80(0%) Minus/Plus
Query        3  RQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD  242
                +QL  N +AE E +A FC  + +RL ++    E +W F   E      L  Q NHF+P  P+NGC+I AIASAL RREVD
Subject   3472  KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVD  3711

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 1

Range 1: 3475 to 3714 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.8 bits(183) 0.0 36/80(45%) 0/80(0%) Minus/Plus
Query        3  RQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD  242
                +QL  N +AE E +A FC  + ++L ++    E +W F   E      L  Q NHF+P  P+NGC+I AIASAL RREVD
Subject   3475  KQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVD  3714

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 1

Range 1: 3471 to 3710 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.8 bits(181) 0.0 36/80(45%) 0/80(0%) Minus/Plus
Query        3  RQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD  242
                +QL  N +AE E +A FC  + +RL ++    E +W F   E      L  Q NHF+P  P+NGC+I AI+SAL RREVD
Subject   3471  KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVD  3710

Nucleotide Sequence (464 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
464

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
265.0 905.4 28% 3.046e-70 46% NC_001948
89.5 208.2 33% 2.165e-25 38% NC_009087
83.1 124.9 22% 2.866e-22 41% NC_004667
62.9 136.1 21% 2.014e-20 52% NC_008020
75.3 118.1 16% 3.152e-20 48% NC_024449

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 2330 to 2716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.0 bits(572) 0.0 105/129(81%) 0/129(0%) Plus/Plus
Query       72  GGSHKSLGWPKFMDEILSSAGGRSYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATFTISKARNLVEGNYCSQVIRPGEFFEMPGGMQNNYFHGVSNCGNGRVSMTFRRQKLEDEDQVF  458
                GGSH SLGWPKFMD+ILSS GGR+YYNSCL Q YEENSKLALHKDDESCYE GHKVLT+NL+GSATFTISK+RNLV GN+CS  I P EFFEMP GMQ NYFHGVSNC  GRVS+TFRRQKLED+D +F
Subject   2330  GGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYEIGHKVLTVNLIGSATFTISKSRNLVGGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIF  2716

Range 2: 2329 to 2706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(450) 0.0 99/126(79%) 0/126(0%) Minus/Minus
Query       71  SSSSNFWRLKVMETLPFPQLETPWK*LFCIPPGISKNSPGLIT*LQ*LPSTKFRALLIVKVAEPTKLMVKTLCPVS*QLSSSLCRANLEFSS*R*TKQEL**LRPPAELRISSMNFGHPKLL*LPP  448
                SSSSNFWRLKV +T P  QLETPWK*L C+P GISKNS G I  LQ*LP TKFR LLIVKVAEP KL VKTLCP+S*QLSSSL RAN EFSS* * + EL**LRPP ELRI SMNFGHPKL+ LPP
Subject   2329  SSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPPTKFRDLLIVKVAEPIKLTVKTLCPIS*QLSSSL*RANFEFSS*I*ARHEL**LRPPVELRI*SMNFGHPKLVWLPP  2706

Range 3: 2340 to 2714 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 58/125(46%) 0/125(0%) Minus/Minus
Query       82  RPDPHLPTFGV*KSWKPSRFHNWRLHGSNYSAYPRASQRIHQA*SPDCNNCPLPNFGPCLL*KWLSRLN*WLRLCVRSHSSSHHPCAGLIWSSPHNAEPNRNCNSCAPQQN*GFHP*TLAIPSSC  456
                R + HLPTFG *+S  P+  +NW+ HGSN  A P A ++ H A    CN+ P PNF     *K LSRLN*  +LC + HS+SHHP    I + PH +EP  NC++   Q +    P*TLA  S C
Subject   2340  RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQPNFATY***KLLSRLN*QSKLCAQFHSNSHHPYEEPILNFPHRSEPGMNCSNYVHQWSLESDP*TLATLSLC  2714

Range 4: 2339 to 2716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 60/126(48%) 0/126(0%) Minus/Minus
Query       81  KDLILIFQLLASESHGNPPVSTIGDSMEVIILHTPGHLKEFTRPNHLTAIIALYQISGLAYCESG*AD*IDG*DFVSGLIAALIILVQG*FGVLLITLNQTGIVIAAPPSRTKDFIHELWPSQALV  458
                +D I+IFQLLA +    PP  TIG+ MEVI LH P H ++   PN   A+I   QIS L   ES *AD*I+  +FV   IA LIIL++  F + LI L+Q  IV+    S   + IHELWP  A V
Subject   2339  EDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITPNQISRLTNSESC*AD*INSQNFVPNFIATLIILMKSQF*IFLIDLSQA*IVVITSTSGA*NLIHELWPP*ACV  2716

Range 5: 2340 to 2708 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 58/123(47%) 0/123(0%) Plus/Plus
Query       82  TRAWDGQSSWMKSLVLLGGAAITIPVWFSVMRRTPN*PCTRMMRAAMRPDTKS*PSI*SAQPLSQ*ARPEIW*RAIIAVR*LGLVNSLRCPGVCRIITSMESPIVETGGFP*LSDAKSWKMRI  450
                T+A  GQSSW++    L     TI  W   MR+  N    RMMR AM+  TK *  I*SAQ LS     EIW   IIA   LG ++  +C G C  ITSM  PIV  GG+ *   AKSWKM I
Subject   2340  TQA*GGQSSWIRF*APLVDVITTIHAWLRSMRKIQNWLFIRMMRVAMKLGTKF*LLI*SAQQLSLLVSREIWLGVIIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMMI  2708

Range 6: 2335 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 58/123(47%) 0/123(0%) Plus/Plus
Query       77  QSQELGMAKVHG*NP*FCWGAQLLQFLFGSAL*GELQISPAQG**ELL*DRTQSLNHQFSRLSHFHNKQGPKFGRGQLLQSGD*AW*IL*DARGYAE*LLPWSLQLWKREGFHDFQTPKVGR*  445
                +  +L +AKVHG +    W   LLQF+ GS L*G+ +I  + G**ELL*+  QS +  F+RLS+FH     KFG G  LQ  + A *+  +A G+A  LLPW  QL+ R G  D   PKVGR*
Subject   2335  EPHKLRVAKVHGSDSKLHWWT*LLQFMPGSDL*GKFKIGSS*G**ELL*NWAQSFDC*FNRLSNFHY**VAKFGWG*SLQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR*  2703

Chrysanthemum virus B, complete genome

Sequence ID: Length: 8855 Number of Matches: 4

Range 1: 2281 to 2493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 32/71(45%) 0/71(0%) Plus/Plus
Query       60  FGH*GGSHKSLGWPKFMDEILSSAGGRSYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATF  272
                + + GG H+SL WP ++   +   G    YN CLVQRY+EN+K+ +H DDE C+ TG  + T+N+ G ATF
Subject   2281  YSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATF  2493

Range 2: 2548 to 2670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/41(44%) 0/41(0%) Plus/Plus
Query      330  PGEFFEMPGGMQNNYFHGVSNCGNGRVSMTFRRQKLEDEDQ  452
                PG+ FEMPGG Q  + H V      R+S+TFR  K   +D+
Subject   2548  PGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDE  2670

Range 3: 2292 to 2501 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 29/70(41%) 0/70(0%) Minus/Minus
Query       71  LIVKVAEPTKLMVKTLCPVS*QLSSSLCRANLEFSS*R*TKQEL**LRPPAELRISSMNFGHPKLL*LPP  280
                +++KVA P+ L V    PV+   SSSLC     FSS*R TKQ+L*    P  L  + +  G  +L   PP
Subject   2292  VVMKVARPSILTVYMGPPVTKHSSSSLCIPIFAFSS*RCTKQQL*ISGMPTSLIQTLIQPGQFRLWCSPP  2501

Range 4: 2557 to 2643 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 11/29(38%) 0/29(0%) Minus/Minus
Query      339  SESHGNPPVSTIGDSMEVIILHTPGHLKE  425
                S+ HG P  +++  SM + +L  PGHL++
Subject   2557  SKCHGKPVFASLKYSMFMSLLEAPGHLEQ  2643

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 2

Range 1: 4887 to 5090 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 30/68(44%) 0/68(0%) Plus/Plus
Query       72  GGSHKSLGWPKFMDEILSSAGGRSYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATFT  275
                GGSH S GWP+ +++IL++    S ++ CLVQ+Y+    +  H DDE CY + + +LT+NLVG A F+
Subject   4887  GGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS  5090

Range 2: 5130 to 5231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 14/34(41%) 0/34(0%) Plus/Plus
Query      324  IRPGEFFEMPGGMQNNYFHGVSNCGNGRVSMTFR  425
                +  G++F MP G Q  + H V++   GR+S+TFR
Subject   5130  VASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  5231

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 3

Range 1: 2289 to 2426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 24/46(52%) 0/46(0%) Plus/Plus
Query      141  SYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATFTI  278
                +YYNSCL Q YE ++ L  H DDES +E G ++ T+NL GSA F +
Subject   2289  NYYNSCLYQVYEADATLNWHSDDESLFEKGGRIATVNLSGSAVFHV  2426

Range 2: 2475 to 2561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 16/29(55%) 0/29(0%) Plus/Plus
Query      342  FEMPGGMQNNYFHGVSNCGNGRVSMTFRR  428
                FEMP   Q+ + H +SN  NGR S+TFRR
Subject   2475  FEMPADFQSTHKHKLSNPSNGRESVTFRR  2561

Range 3: 2205 to 2267 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 12/21(57%) 0/21(0%) Plus/Plus
Query       60  FGH*GGSHKSLGWPKFMDEIL  122
                + + G SHKSLGW  +MDE L
Subject   2205  YNYTGASHKSLGWAAWMDEWL  2267

Cherry twisted leaf associated virus isolate CTLV_8431, complete genome

Sequence ID: Length: 8431 Number of Matches: 2

Range 1: 2458 to 2580 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 26/41(63%) 0/41(0%) Plus/Plus
Query      147  YNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSAT  269
                +NSCLVQ+YE+++KL LHKDDE CY+  H+V+T+NL G+AT
Subject   2458  FNSCLVQKYEKSAKLGLHKDDEDCYDDEHEVMTVNLFGTAT  2580

Range 2: 2659 to 2757 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 16/33(48%) 0/33(0%) Plus/Plus
Query      333  GEFFEMPGGMQNNYFHGVSNCGNGRVSMTFRRQ  431
                GE+  MP G Q  + HGVS    GR+S+T R+Q
Subject   2659  GEYLLMPNGFQKKFKHGVSCTSAGRISLTLRKQ  2757

Nucleotide Sequence (332 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
332

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
210.9 860.5 33% 3.42e-54 50% NC_001948
59.7 207.9 35% 1.214e-20 37% NC_014821
59.3 194.6 48% 3.576e-19 38% NC_003462
52.4 127.4 20% 4.168e-18 38% NC_025388
51.5 126.5 17% 7.698e-18 42% NC_028868

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 7049 to 7378 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 84/110(76%) 0/110(0%) Minus/Plus
Query        3  LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*NAFSATCLLG*DHNSINYWFGHWVGSALLKEIKSTIFRRQYSPAP  332
                LICFGKEAVDLAVAHNS+FKLPCEVRGSTFNVVTLLKSRDPT ED+HWFY+AATRHR KLIIMQ*+AFSA C LG +HNSI+ W GHW  +A  +E+KST+FR Q+   P
Subject   7049  LICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIP  7378

Range 2: 7051 to 7362 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.7 bits(340) 0.0 71/104(68%) 0/104(0%) Plus/Minus
Query       19  CLLNMVDLISLRSAEPTQCPNQ*LMELWS*PSRQVAEKAFYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQM  330
                C LN VDL S  +A   QCP+Q  MELW  P+ Q AEKA YC+II+   CLVAA *NQCLSS VGSLDF  VTTL VEP TSQGNL SELCATARSTAS PK +
Subject   7051  CPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHI  7362

Range 3: 7053 to 7379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 72/109(66%) 0/109(0%) Minus/Plus
Query        2  FALERRP*I*QLHTILTSNCPARCGVQHLTL*RY*SPGIQLQKISIGSTLQPQGIEVN***CSKMPFQQPAYWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP  328
                +AL RR  I  L T L SN   +  VQ LT * +*+  IQ Q+I  G TL  Q    N** CSKMPFQQPA WAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQ P
Subject   7053  YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFP  7379

Range 4: 7055 to 7366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.5 bits(285) 0.0 61/104(59%) 0/104(0%) Plus/Minus
Query       15  ILSPEYGRFDFLKKCRTNPMPKPIVNGVMVLAQ*AGC*KGILLHYYQFTSMPCGCNVEPMLIF*SWIPGLQ*RHNVKC*TPHLAGQFEVRIVCNC*IYGLLSKA  326
                +LSPE GRFDFL+KC T+PMPKP VNGVMV AQ AGC*KGILLH YQF  + C  NV+P+ I   WI   Q  ++VK *T +    FE R+V N  I+ LL+KA
Subject   7055  MLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKA  7366

Range 5: 7051 to 7377 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 56/109(51%) 0/109(0%) Minus/Plus
Query        4  HLLWKGGRRSSSCTQF*LQIALRGAGFNI*RCDVIEVQGSNFRR*ALVLRCSHKASK*TDNNAVKCLFSNLPTGLRP*LH*LLVWALGWFCTS*GNQIYHIQETIFTSS  330
                ++LW GG  S  C Q *+QI L    FN *R +  E++ SN R *ALVL C +K     DN+AV+CLFS+L  G +P*LH* L WALG  C  *G+QIY IQ T   +S
Subject   7051  NMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINS  7377

Range 6: 7056 to 7376 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 53/107(50%) 0/107(0%) Plus/Minus
Query        5  ELVNIVS*IW*I*FP*EVQNQPNAQTNS*WSYGLSPVGRLLKRHFTALLSVYFDALWLQRRTNAYLLKLDPWTSITSQR*MLNPAPRRAI*SQNCVQLLDLRPPFQS  325
                EL+++V *I *I* P ++Q++PNAQ N  WSYG  P+ RLLKRH TA LS+    L  Q +T+AY L LD   S   +R* LN    + I* Q+C Q  D  PP+QS
Subject   7056  ELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQS  7376

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 5

Range 1: 7347 to 7481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 23/45(51%) 0/45(0%) Minus/Plus
Query        2  MPFQQPAYWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP  136
                MPF QP  ++K++ P+ IG  + LVL  L +S LP  GDNIH LP
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLP  7481

Range 2: 7148 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 17/39(44%) 0/39(0%) Minus/Plus
Query      216  LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSR  332
                +IC  KE  D    H+ ++KLPC+VRG+TF+ VT +  +
Subject   7148  IICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 3: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 9/15(60%) 0/15(0%) Minus/Plus
Query      144  FYVAATRHRSKLIIM  188
                +YVA TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 4: 7150 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.6 bits(91) 0.0 22/59(37%) 0/59(0%) Plus/Minus
Query      154  SLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQM  330
                +L  CLV+AT     ++      +  VT   V PRT QGNL S  C   +S+ SF +Q+
Subject   7150  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQI  7326

Range 5: 7340 to 7480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 18/47(38%) 0/47(0%) Plus/Minus
Query        3  GSW*ILSPEYGRFDFLKKCRTNPMPKPIVNGVMVLAQ*AGC*KGILL  143
                G  *+LSP  G+   +K  RT     PI  G  +L    G  KGIL+
Subject   7340  GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILI  7480

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 5

Range 1: 7378 to 7518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 21/47(45%) 0/47(0%) Minus/Plus
Query        2  SKMPFQQPAYWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP  142
                + MPF QP  ++K++ P+ +G+ + +VL  L +S LP  GDNIH LP
Subject   7378  TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLP  7518

Range 2: 7185 to 7301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 15/39(38%) 0/39(0%) Minus/Plus
Query      216  LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSR  332
                +IC  K   D    H+ ++K PC+VRG+TF++VT +  +
Subject   7185  IICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK  7301

Range 3: 7332 to 7373 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 9/14(64%) 0/14(0%) Minus/Plus
Query      144  YVAATRHRSKLIIM  185
                +VA TRHRSKL+++
Subject   7332  FVALTRHRSKLVLV  7373

Range 4: 7187 to 7288 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 17/34(50%) 0/34(0%) Plus/Minus
Query      229  NVTTLNVEPRTSQGNLKSELCATARSTASFPKQM  330
                NVT   V PRT QGNL S LC   +S+  F +Q+
Subject   7187  NVTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQI  7288

Range 5: 7384 to 7461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 11/26(42%) 0/26(0%) Plus/Minus
Query       59  QNQPNAQTNS*WSYGLSPVGRLLKRH  136
                Q+  N    S W Y L  + RL KRH
Subject   7384  QHNCNCNAYSNWKYAL*VIWRLSKRH  7461

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 3

Range 1: 6637 to 6756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 17/40(42%) 0/40(0%) Minus/Plus
Query      213  LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRD  332
                ++C+ KE  DL   H +D+K  C++RGSTF++VT + S +
Subject   6637  IVCYEKEVFDLLDRHGADYKKDCQIRGSTFDIVTFITSSE  6756

Range 2: 6890 to 6994 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 16/35(46%) 0/35(0%) Minus/Plus
Query        2  KTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP  106
                + + P+ +GLG+G+V+  L +S LP  GDN+H LP
Subject   6890  RVLLPIAVGLGVGIVIWCLTRSTLPSVGDNVHSLP  6994

Range 3: 6733 to 6828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 12/32(38%) 0/32(0%) Minus/Plus
Query      144  VVTLLKSRDPTSEDKHWFYVAATRHRSKLIIM  239
                V  +  S     ED++  Y+  TRHRS L I+
Subject   6733  VTFITSSESFEPEDRYKVYLCLTRHRSVLRIL  6828

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 3

Range 1: 6602 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 17/40(42%) 0/40(0%) Minus/Plus
Query      213  LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRD  332
                ++C+ KE  DL   H +D+K  C++RGSTF++VT + + D
Subject   6602  IVCYEKEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD  6721

Range 2: 6855 to 6959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 18/35(51%) 0/35(0%) Minus/Plus
Query        2  KTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP  106
                + + P+ IGLG+G+V+  L +S LP  GDNIH LP
Subject   6855  RVLLPIAIGLGVGVVIWCLTRSTLPQVGDNIHSLP  6959

Range 3: 6734 to 6793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 10/20(50%) 0/20(0%) Minus/Plus
Query      144  EDKHWFYVAATRHRSKLIIM  203
                ED++  Y+  TRHRS L I+
Subject   6734  EDRYKVYLCLTRHRSILRIL  6793

Nucleotide Sequence (363 letters)

Query ID:ds2016-57_42
Query definition:No definition line
Query length:352
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
363

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
107.4 153.3 48% 5.906e-23 42% NC_003462
238.9 891.5 59% 1.549e-62 55% NC_001948
105.5 105.5 32% 2.104e-22 42% NC_009892
106.5 106.5 31% 1.115e-22 44% NC_018714
106.5 154.3 46% 1.115e-22 44% NC_014821

Alignments

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 2

Range 1: 6693 to 7052 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 50/120(42%) 0/120(0%) Plus/Plus
Query        2  GVVLGVFGCIVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI  361
                G  + +   ++  L+ F F      L  P+VVH VPGSGK++LI++ +  +    A T GVP+  N+ G YIK    G   +G  +ILDEYLS   ++GF+ LFSDPYQN      AHFI
Subject   6693  GYRVSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI  7052

Range 2: 6857 to 7021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 24/55(44%) 0/55(0%) Minus/Minus
Query      166  FW*GSENSTSKPEVSEIDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKA  330
                FW*GSE     P     DKYSS M   P    P    L+Y+P     SGTP V A
Subject   6857  FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTA  7021

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 6569 to 6919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.9 bits(515) 0.0 98/117(84%) 0/117(0%) Plus/Plus
Query       11  LGVFGCIVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI  361
                L +   +VKALSAFEFVGVF VLK PVV+H VPGSGKSSLIRELISEDE FIAFTAGVPDSPNLTGRYIKPY+PGCAV GK+NILDEYLS+ D SGFDVLFSDPYQN+SIP+EAHFI
Subject   6569  LSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFI  6919

Range 2: 6685 to 6918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.0 bits(308) 0.0 63/78(81%) 0/78(0%) Minus/Minus
Query      127  MKCASLGMLTFW*GSENSTSKPEVSEIDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAIKASSSEMSSLIR  360
                MKCASLGML FW GSENSTSKPE S  DKYSSS+  FP TAHPG *GLMYLPVR GLSGTPAVKA+K SSSE+SSLI+
Subject   6685  MKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK  6918

Range 3: 6600 to 6707 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 21/36(58%) 0/36(0%) Minus/Minus
Query       42  QK*APLLGYFYRYLELYGQQLEI*AHKTHQQIQMRT  149
                +K APLL YFY Y   Y   LEI*AH  H Q QM T
Subject   6600  RKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLT  6707

Range 4: 6560 to 6916 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 65/119(55%) 0/119(0%) Minus/Minus
Query        2  EVCLSWNADILVRV*EQHIKARSIGDRQVLIKYVYFPLHCTPWSVGLDVPSCQIWTVWHTCCKGYKSLVFRNELPY*ATFTATWNSMDNNWRFKHTKHTNKFKCGQSLDDTTKHTQHNP  358
                E+CL  NAD+LV V EQHIK   I D QVLIKY+ FP HCTPW + L+VPSC+I  VW+TCC+ Y+ L+  N LPY* TFT T ++M++ W+FKHT++T K KC Q  +    +TQ  P
Subject   6560  EMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMP  6916

Range 5: 6676 to 6921 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 52/82(63%) 0/82(0%) Plus/Plus
Query      118  *K*PNKGAHF*RRGFYSLYSRCARQSKSDRKVHQALRSRVCSARENKHT**VLVYLRYFWL*CAVLRPLPECQHSKRGTLHK  363
                *K* NKGA+F    F+S +SRC+RQ  S RKVH AL SRVCSARE+ +T**VLV  R+F  *CAVL P+P+ QHS RGT H+
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQ  6921

Range 6: 6669 to 6917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 51/83(61%) 0/83(0%) Plus/Plus
Query      111  VAVKVA**GSSFLKTRLL*PLQQVCQTVQI*QEGTSSPTLQGVQCKGK*TYLMSTCLSPILLALMCCSQTLTRMSAFQERHTS  359
                V VKV **GS F + R+ *  QQV QT  I QEGT S  LQGVQC+GK  YLMSTC S I   LMCCS+T T+ SAF +RH S
Subject   6669  VVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHIS  6917

Range 7: 6756 to 6917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 36/54(67%) 0/54(0%) Minus/Minus
Query      198  *SVPLLEC*HSGKGLRTAHQSQKYRR*TSTHQVCLFSLALHTLERRA*CTFLSD  359
                *+VPL EC*  G G RTAHQ+ K    TSTHQV   SLALHTLE +A*CTFL D
Subject   6756  *NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D  6917

Range 8: 6589 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 13/16(81%) 0/16(0%) Minus/Minus
Query       31  STQNTPTNSNADKALT  78
                ST  TPTNSNAD ALT
Subject   6589  STLKTPTNSNADNALT  6636

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 6482 to 6832 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 49/117(42%) 0/117(0%) Plus/Plus
Query       11  LGVFGCIVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI  361
                + V   +V  L  + F      ++  ++VH VPGSGK++LIRE ++ +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS    +GFD  FSDP+QN      AHF+
Subject   6482  VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFV  6832

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 6688 to 7020 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 49/111(44%) 0/111(0%) Plus/Plus
Query       29  IVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI  361
                ++  L+ F F      L  P+VVH VPGSGK++LI++ +  +    A T GVP+  N+ G YIK    G   +G  +ILDEYLS   ++GF+ LFSDPYQN      AHFI
Subject   6688  VLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI  7020

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 2

Range 1: 6683 to 7015 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.5 bits(226) 0.0 49/111(44%) 0/111(0%) Plus/Plus
Query       29  IVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI  361
                ++  L+ F F      L  P+VVH VPGSGK++LI++ +  +    A T GVP+  N+ G YIK    G   +G  +ILDEYLS   ++GF+ LFSDPYQN      AHFI
Subject   6683  VLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI  7015

Range 2: 6820 to 6984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 25/55(45%) 0/55(0%) Minus/Minus
Query      166  FW*GSENSTSKPEVSEIDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKA  330
                FW*GSEN   KP     D+YSS M   P    P    L+ +P  F  SGTP V A
Subject   6820  FW*GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTA  6984