Queries
Nucleotide Sequence (459 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
298.0 | 901.4 | 56% | 3.535e-80 | 42% | NC_001948 | |
123.0 | 259.3 | 46% | 2.579e-42 | 51% | NC_008020 | |
112.0 | 242.4 | 40% | 4.442e-38 | 55% | NC_013006 | |
112.4 | 280.1 | 53% | 2.368e-38 | 42% | NC_010538 | |
109.7 | 271.4 | 26% | 8.332e-38 | 33% | NC_026248 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6326 to 6736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
298.0 bits(644) | 0.0 | 124/137(91%) | 0/137(0%) | Minus/Plus |
Query 48 IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA 458 I+ERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+FIAFTA Subject 6326 IWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTA 6736
Range 2: 6332 to 6730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 70/133(53%) | 0/133(0%) | Plus/Minus |
Query 54 KGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSL 452 + YE L+L + Y*TTFTTTR+ MN+ WK +H NT+KLK Q FN*+IHN MPNT*GLI SFK N*A HL+L+ + E +T+++ +F HHFN L+Q V IG L I++N +LQV H SNA L Subject 6332 ESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPL 6730
Range 3: 6331 to 6603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 71/91(78%) | 0/91(0%) | Plus/Minus |
Query 181 DKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS 453 D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS A*+TSIA*LS+QFSRLPIS AM I S Subject 6331 DNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRS 6603
Range 4: 6342 to 6731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 69/130(53%) | 0/130(0%) | Plus/Minus |
Query 53 *RL*NSRPQ**VLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQC 442 *+L*NS P+ LLNYFYHYQ YE LEI*A KH QTQ T L*L+YS* S++AK+LRPN *LQ KLS SS A * H+ + L SSFQ P HR P H+ Q +SPG P QC Subject 6342 *KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QC 6731
Range 5: 6337 to 6624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 49/96(51%) | 0/96(0%) | Minus/Plus |
Query 160 NLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGC 447 ++HC +G PGEL+* LC+ G+LC+ GR +*ND+ S L LC + + A DE+LNF +*SY LGLK LA +YYE* S*S V +*VC C Subject 6337 DMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRC 6624
Range 6: 6676 to 6768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 13/31(42%) | 0/31(0%) | Minus/Plus |
Query 16 *K*FNKRTYH*GREFHSLYGRAFPKHTQHNR 108 *K*FNK G EFHS + R + H + Subject 6676 *K*FNKGANFRG*EFHSFHSRCSRQP*SHRK 6768
Range 7: 6339 to 6572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 39/78(50%) | 0/78(0%) | Minus/Plus |
Query 212 FALLVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLKHTTTVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 445 +ALL +W TWR L M+ R PM T W S LK** ++K + V S S R* AQF LKL IRP*VFG++* Subject 6339 YALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII* 6572
Range 1: 5868 to 6116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 51/83(61%) | 0/83(0%) | Minus/Plus |
Query 210 IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI 458 + ER+CIA+E NL NCIDNYAIEVSYAY+LGEL++ MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ + GV+ Subject 5868 VLERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM 6116
Range 2: 6153 to 6311 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 32/53(60%) | 0/53(0%) | Minus/Plus |
Query 48 MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA 206 M+ LV F F V SVLR PV+ H VPG+GKS+LIRELI D FIAFTA Subject 6153 MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTA 6311
Range 3: 5885 to 6115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 39/77(51%) | 0/77(0%) | Plus/Minus |
Query 211 ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAM 441 ITP + + I+ N EIE CLF T TQL AS SSSFI NSPSL A*+TS+A*LS+Q +L +S A+ Subject 5885 ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAI 6115
Range 1: 5832 to 6044 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 39/71(55%) | 0/71(0%) | Minus/Plus |
Query 246 IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA 458 ++ER+CIA+E NL NCIDNYAIEV+YAY++GE ++ MNEEEV+A YNCVR +++NKH ++ + ++E+ Subject 5832 VFERLCIAKETNNLVNCIDNYAIEVAYAYQMGEKAVARMNEEEVDAFYNCVRVIIKNKHLLKSDVRLIYES 6044
Range 2: 6080 to 6241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 30/54(56%) | 0/54(0%) | Minus/Plus |
Query 51 IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFT 212 + M+ LV LS ++FV + S + P+VVHSVPG+GKSSLIR+LI D F AFT Subject 6080 LYMDVLVNYLSKYKFVRLSSCITPPIVVHSVPGAGKSSLIRDLINSDCRFSAFT 6241
Range 3: 5837 to 6007 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.3 bits(134) | 0.0 | 37/57(65%) | 0/57(0%) | Plus/Minus |
Query 283 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS 453 CLFL TQL* ASTSSSF+ + SP *A TSIA*LSMQF+RL +S AMQ LS Subject 5837 CLFLMMTLTQL*NASTSSSFMRATAFSPIW*AYATSIA*LSMQFTRLLVSFAMQSLS 6007
Range 1: 5732 to 5941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 41/70(59%) | 0/70(0%) | Minus/Plus |
Query 249 IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 458 + ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++ M+EEEV A YNCVR ++RNKH ++ + G++E Subject 5732 VLERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE 5941
Range 2: 6013 to 6180 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 29/56(52%) | 0/56(0%) | Minus/Plus |
Query 48 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA 215 +I M+ +V L F F + + L P+VVH VPG+GKS+LIRELI D F+AFTA Subject 6013 LIPMDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTA 6180
Range 3: 5737 to 5943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 37/69(54%) | 0/69(0%) | Plus/Minus |
Query 247 ASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS 453 +S P CLFL RTQL* A TSSS + SP *A TSIA*LSMQ RL S AM ILS Subject 5737 SS*TPRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILS 5943
Range 1: 5720 to 5929 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 40/70(57%) | 0/70(0%) | Minus/Plus |
Query 249 IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 458 + ER+CIA E+ NL NCIDNY+IEV +AY+LGE ++ M+EEEV A YNCVR +VRNKH ++ + +FE Subject 5720 VLERMCIAMELNNLANCIDNYSIEVGFAYKLGERAVNRMDEEEVSAFYNCVRIIVRNKHLLKSEVRSVFE 5929
Range 2: 5985 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 31/56(55%) | 0/56(0%) | Minus/Plus |
Query 48 VIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTA 215 +I M+ LVK L + FV + S L PVV+H VPG+GKS+LIRELI D F+ FTA Subject 5985 LI*MDVLVKYLCKYNFVRLSSKLASPVVIHCVPGAGKSTLIRELIRADTRFVGFTA 6152
Range 3: 5725 to 5931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 38/69(55%) | 0/69(0%) | Plus/Minus |
Query 247 ASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS 453 +SN CLF T RTQL* A TSSS I+ SPSL*A TS+ *LSMQ +RL S AM ILS Subject 5725 SSNTERTSDFKRCLFRTMMRTQL*NALTSSSSILFTARSPSL*ANPTSME*LSMQLARLFNSIAMHILS 5931
Range 4: 5988 to 6152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 18/55(33%) | 0/55(0%) | Plus/Minus |
Query 48 GRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN 212 GRK +E+ + SD F + TRN +N + + THK+ Q + IH+N Subject 5988 GRKTHESGICSD*FPNQSALACTRNTVNYHRRR*LTRQTHKVVFTQILHQNIHSN 6152
Nucleotide Sequence (469 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
340.6 | 1069.8 | 25% | 5.403e-93 | 48% | NC_001948 | |
160.5 | 160.5 | 33% | 8.728e-39 | 43% | NC_029087 | |
91.3 | 173.5 | 33% | 1.07e-36 | 45% | NC_029089 | |
90.4 | 168.5 | 28% | 3.397e-35 | 50% | NC_017859 | |
88.6 | 165.7 | 28% | 2.238e-34 | 50% | NC_005343 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 4022 to 4486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.6 bits(737) | 0.0 | 139/155(90%) | 0/155(0%) | Minus/Plus |
Query 1 GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ 465 GLTGVISDEKF+D+KPWLSGIST++IK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDDSCKVAKAG+SK+EGWDVVTFE FLRK+ LKAGHCVIFDEVQLFPPGY+D+CLL IRSDAFISLAGDPCQSTYD+Q Subject 4022 GLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQ 4486
Range 2: 4021 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.5 bits(381) | 0.0 | 118/153(77%) | 0/153(0%) | Plus/Minus |
Query 8 SYVL*QGSPASEMKASLRMVNRQXXXXXXXXXXXXXKITQWPAFRFSIFLRNSSKVTTSQPSLFDLPAFATXXXXXXXXXXXXXXARALLGETKVTNLPSDLFIXXXXXXXXXXXXXXSTTVNSRDLIFEVDIPESHGLESLNFSSLITPVKP 466 SYVL* GSPASEMKASLR++++ S PGGN+ TSSKITQWPAF + FLR +SKVTTS PS FDLPA ATLQLSSISRS LIE A+A LGETKVTNLPSDLF+KLLYKKL PAP VPSTTVNS LI VDIPES G SLNFSSLITPV+P Subject 4021 SYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRP 4479
Range 3: 4028 to 4486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 79/153(52%) | 0/153(0%) | Plus/Minus |
Query 1 LGVICALTRVTGE*NESITPYG*QANVNIAWRKQLNLIKNHTMARLQIFNLSEKLFKGHNVPTFSL*FACLCHFATIIHLQVPFN*IG*SPSG*NKGYEFTFRPLHKALVQKAFARSKSSKHDC*FSRFDI*S*YS*KPWLGIIKFLITYHTS 459 L VICALT +T +*NESIT Y QA ++++ RKQL+LIKNHT+A LQ N S++ K + +P F L* C +FA IIH ++ F+*I *S SG NKGYEFT RP H+ LVQ+ K +KHD F +I S Y+ KP I + LITY+ S Subject 4028 LRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS 4486
Range 4: 4023 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 80/153(52%) | 0/153(0%) | Minus/Plus |
Query 6 A*LV**VMRNLMIPSHGFQEYQLQISNLEN*QSCLELLERAKAFCTRAL*RGLKVNS*PLFHPEGL*PIQLKGTWRWMIVAKWQRQANQREKVGTL*PLKSFSERLKI*RRAIV*FLMRFSCFLQAMLTFAC*PYGVMLSFHSPVTLVKAHMT 464 A*L *VMR+ ++ + GF Y L I + N* SCL L + CTR *+GL+VNS*PLF P+ L* IQ K +WMI AK +Q QR K G * L+ E+L+ *R A V*FLMR SCFL +AC Y VMLSFH V VKAHMT Subject 4023 A*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMT 4481
Range 5: 4027 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.0 bits(262) | 0.0 | 72/151(48%) | 0/151(0%) | Minus/Plus |
Query 8 DWCDK**EI**FQAMAFRNINFKYQISRINSRAWNFWSGQKLFVQELYEEV*R*IRNLCFTQKGSSQFN*KGPGDG**LQSGKGRQIKERRLGRCDL*RVSQKD*KSEGGPLCDF**GSAVSSRLC*RLPVNHTE*CFHFTRR*PLSKHI* 460 +W K**E+ * + +AF I + Y I+ RAW W ++ VQE +E+V* *IRNLCF+Q S+FN K +G**LQS R +KE R+G + * K + EG PLCDF**G VSS + + +T *CFHFT * +SKHI* Subject 4027 NWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI* 4479
Range 6: 4119 to 4259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 27/47(57%) | 0/47(0%) | Plus/Minus |
Query 228 YHPSPGPF*LNWLEPFWVKQRLRIYLQTXXXXXCTKSFCPLQKFQAR 368 YHP F*LN L+ W KQRLRIY QT S*+SCT++ Q +QAR Subject 4119 YHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQAR 4259
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3562 to 4026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 67/155(43%) | 0/155(0%) | Minus/Plus |
Query 1 GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ 465 G TG IS +ND + S+ +R L V+LGTFGAGKS L+K FM ++G+ +T+VSPRR LA D+++D + K++ + W V TFE+FL + ++ G VI DEVQL+PPGY+D+ L + I L GDPCQS YD++ Subject 3562 GQTGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSE 4026
Elderberry carlavirus E isolate EBCVE, complete genome
Range 1: 3437 to 3682 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 40/82(49%) | 0/82(0%) | Minus/Plus |
Query 220 GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCK 465 G TG IS E FND +S N SR L ++LGTFGAGKS L+K FM+ ++G+ VT+VSPRR LA+ D+E+ K Subject 3437 GRTGAISSELFNDKPSLEPLVSAGNTGSRTLHIILGTFGAGKSTLFKKFMQANKGRCVTYVSPRRGLADEFAADMELHKRSK 3682
Range 2: 3671 to 3892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 33/74(45%) | 0/74(0%) | Minus/Plus |
Query 1 KVAKAGKSKREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ 222 K +K + + W V TFE FL + G +I DE+QLFPPGYVD+ + D I L GDPCQS YD++ Subject 3671 KRSKGKRLASQNWAVFTFERFLEAAQLAGPGTAIIIDEIQLFPPGYVDLVCTLLARDMHIFLVGDPCQSDYDSE 3892
Range 1: 3769 to 3960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 32/64(50%) | 0/64(0%) | Minus/Plus |
Query 1 EGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ 192 + W V TFE+F+ I+++ +G VI DE+QL+PPGY+D+CL + D I L GDPCQS YD++ Subject 3769 QNWRVNTFEKFIAVIKSIGSGAAVIIDEIQLYPPGYLDICLALLERDVHIFLVGDPCQSDYDSE 3960
Range 2: 3502 to 3708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 35/69(51%) | 0/69(0%) | Minus/Plus |
Query 259 GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALAN 465 G TG IS FND + + SR + VVLGTFGAGKS L+K FM+ ++GK V +VSPRR LA+ Subject 3502 GRTGAISSGLFNDKASLEPDVHNGDFSSRAVCVVLGTFGAGKSTLFKKFMQANKGKCVHYVSPRRGLAD 3708
Range 1: 3781 to 3978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 34/66(52%) | 0/66(0%) | Minus/Plus |
Query 1 KREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ 198 K W+V TFE FL+ K G VI DEVQL+PPGY+D+ L +RSD + + GDPCQS YD++ Subject 3781 KSANWNVFTFEVFLKMAAKSKPGQVVIIDEVQLYPPGYLDLALTLMRSDVNVFVVGDPCQSDYDSE 3978
Range 2: 3583 to 3780 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 33/66(50%) | 0/66(0%) | Minus/Plus |
Query 187 SRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKREG 384 +RE+T VLGTFGAGKS L+K F+ +S G+ VTFVSPR+ALA ++K ++ + K KR+G Subject 3583 AREVTAVLGTFGAGKSRLFKEFISKSPGRCVTFVSPRKALAEAVKTEIFGESREGKKKGRNGKRDG 3780
Nucleotide Sequence (391 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
275.5 | 1078.0 | 48% | 1.584e-73 | 56% | NC_001948 | |
88.6 | 88.6 | 30% | 2.963e-17 | 34% | NC_001658 | |
90.0 | 135.9 | 25% | 1.143e-17 | 36% | NC_003849 | |
87.2 | 87.2 | 25% | 7.683e-17 | 36% | NC_004322 | |
61.6 | 111.6 | 30% | 1.912e-18 | 33% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7897 to 8277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
275.5 bits(595) | 0.0 | 115/127(91%) | 0/127(0%) | Plus/Plus |
Query 9 GVFGEREGVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 389 G+ +R+ +IENALSKTVDMREVLKHE+VV+SPNVMDEGAIDELIRAFGESGI ES QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA Subject 7897 GILAKRKRIIENALSKTVDMREVLKHETVVISPNVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 8277
Range 2: 7923 to 8279 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.4 bits(466) | 0.0 | 96/119(81%) | 0/119(0%) | Minus/Minus |
Query 35 IAGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSGMPDSPNARINSSIAPSSITLGDSTTDSCFNTSRMSTVFERAFSM 391 +AGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPAISDLFRSQ GL PI+VDL ELPTSEQ RAIS+AT N +LS MPDSPNARI+SSIAPSS+T G+ TT SCF TS MSTVFE AFS+ Subject 7923 LAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSIAPSSMTFGEITTVSCFKTSLMSTVFESAFSI 8279
Range 3: 7900 to 8277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 76/126(60%) | 0/126(0%) | Minus/Minus |
Query 12 SGWNPRLQMDIPHDFCIVHAKSAQGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIALWYARLTECSNQLIYCTFIHNIRR*HNRLVLQYLPHVHSF*KSIFNDPLPFTKH 389 S W PRLQMD+PHDFCIVHAKS H PY S F + VT+ TL+NQG* L ATNIRA+ C IY ++KL A YAR T+C+NQL+YCTFIH+I H+R V Q LPHVH *K I +PL F K+ Subject 7900 SWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLVYCTFIHDIWGNHHRFVFQNLPHVHRL*KCILYNPLAFGKN 8277
Range 4: 7998 to 8273 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 56/92(61%) | 0/92(0%) | Plus/Plus |
Query 110 CYG*RCNR*VDSSIR*VWHTRERSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYPAQILHVLCKNRVEYPSGDGDST 385 C+G*RCNR DS I *+WH+ +R++* RY T LL*CW*L ++N DW+ES+L*P+ + N W+ KG D+ ILHVLCKNRVE+PSGDGD+T Subject 7998 CHG*RCNRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTT 8273
Range 5: 7929 to 7976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 9/16(56%) | 0/16(0%) | Plus/Plus |
Query 41 KCSFKNCGHAGGIEAR 88 +C+FK+ GH GG E R Subject 7929 ECTFKDGGHEGGFETR 7976
Range 6: 7904 to 8278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 70/125(56%) | 0/125(0%) | Plus/Plus |
Query 16 LVKGRGSLKMLFQKLWTCGRY*STSLLCYLLMLWMKVQ*MS*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMQKSCGISIWRRGFHPL 390 L RG +M FQ+ WT GR+*+T + M WMKVQ* S*F H V+LA +A +L *I H ALMLVA + QP*L RV VT* K L *G+* DFACTMQKSCG SIWRRG+H L Subject 7904 LPNARGL*RMHFQRRWT*GRF*NTKRW*FPQMSWMKVQ*TS*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQL 8278
Range 7: 8027 to 8272 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 46/82(56%) | 0/82(0%) | Minus/Minus |
Query 139 VESPSPDGYSTRFLHSTCKICAG*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRSLVCQTHRMLES 384 V SPSPDG STRFLHSTCKI S PL Q F GH+ DS QS L SYQHQS+ V YL R +CQ H+M ES Subject 8027 VVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES 8272
Range 1: 5639 to 5986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 40/116(34%) | 0/116(0%) | Plus/Plus |
Query 42 NALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 389 +ALS E+ + + S V A+ + + +P + A+D+ C D GSS+ +T+ G SP + R+ +AG +R+ TTLR+FC YYAKI+WN ++ IPPA Subject 5639 SALSTAPTDEELSRLDLKPASNLVASADALSAIAADWASLKVPTAQLMRHALDLVNFCFDSGSSKYTTVEGSSPTPTIPRAALAGAVRKHTTLRQFCRYYAKIIWNARVKANIPPA 5986
Range 1: 5430 to 5723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 37/98(38%) | 0/98(0%) | Plus/Plus |
Query 96 VLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 389 V SP+V +D + G+P + A+ + C D GSS TL G SP ++ ++IAG+++ TTLR+FC +YAKI+WN L +PPA Subject 5430 VSSPSVPTAQELDTITSGLTTLGVPTDSLLSHALALVNACFDAGSSSFVTLSGPSPTPTISLAQIAGVVKVTTTLRKFCRFYAKIIWNARLARNLPPA 5723
Range 2: 5429 to 5722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 35/98(36%) | 0/98(0%) | Minus/Minus |
Query 95 AGGIPVSRWIFHTIFA*YMQNLRRVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSGMPDSPNARINSSIAPSSITLGDST 388 AGG +R FH I A* QNLRRVV +L PAI GL P++V E P S+ + A L+ G P + S + + T G+ T Subject 5429 AGGRFRARRAFHIILA*NRQNLRRVVVTLTTPAICAREMVGVGLGPLRVTNDEEPASKHALTRARAWLSSESVGTPRVVRPEVMVSSSCAVGTEGEET 5722
Range 1: 5357 to 5650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 35/98(36%) | 0/98(0%) | Plus/Plus |
Query 96 VLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA 389 V SP V +D + G+P + A+ + C D GSSQ +T+ G SP + +++AG+++ TTLR+FC +YAK++WN L PPA Subject 5357 VSSPAVPTPAELDTIAAGLTTLGVPADSLISHALALVNACFDAGSSQFTTISGPSPTPTITLAQLAGVVKVSTTLRKFCRFYAKLIWNARLSRNRPPA 5650
Range 1: 8261 to 8533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 30/91(33%) | 0/91(0%) | Plus/Plus |
Query 33 VIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR 305 V+ + +SK + +R++ + + +V E I ++ F + G+ V + IARHC+DVGSS +S LIG P D+ E+A II+ Subject 8261 VVGSGMSKRLSIRDLAAIDYKPQAGSVASEEKISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK 8533
Nucleotide Sequence (628 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
466.1 | 1582.5 | 23% | 1.286e-130 | 50% | NC_001948 | |
210.5 | 298.3 | 33% | 1.193e-53 | 32% | NC_029087 | |
154.1 | 317.7 | 29% | 6.75e-54 | 47% | NC_009892 | |
152.3 | 337.1 | 37% | 2.165e-52 | 43% | NC_014821 | |
150.4 | 427.2 | 37% | 5.574e-52 | 29% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 4037 to 4663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
466.1 bits(1011) | 0.0 | 191/209(91%) | 0/209(0%) | Plus/Plus |
Query 1 ISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAPF 627 ISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYA F Subject 4037 ISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIF 4663
Range 2: 4039 to 4662 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 167/208(80%) | 0/208(0%) | Minus/Minus |
Query 3 KGA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSL 626 K A*SAKAAV+EPFLK G+L+SNIGFTNL LS LYLY PSS+L+MSLCSAPKIA SF ESYVL* GSPA EMKASLRI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA TL SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSL Subject 4039 KIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSL 4662
Range 3: 4301 to 4654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 68/118(58%) | 0/118(0%) | Minus/Minus |
Query 265 VISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKNHAMTSL*ACNFPKEDFKGNDIP 618 +IS+SGSH ALFEVT S* +H ++KPPA V+PI + +Q +YVTL S QN I LR+ICALT ITSK +ES+T NK+ *IDV+RR+ L+ IKNH + SL +CNF KE+ K IP Subject 4301 IISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP 4654
Range 4: 4037 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 38/73(52%) | 0/73(0%) | Minus/Minus |
Query 1 IHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCSKHNCQFSLFDVRS*HSSKPRL*IVKFLITY 219 IHF++ FD*IC*S +K Y+F+ R HE LV ETL SPKC+KH+ QF ++ S ++ KPR I + LITY Subject 4037 IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITY 4255
Range 5: 4279 to 4653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 63/125(50%) | 0/125(0%) | Plus/Plus |
Query 243 RQIKEGGLGCRYL*SLP*ESYRPKGWSLRDF**SSAIPSWLHRSMSSCYSQ*RFHLSCW*SLSKHI*FSKR*SYFGC*TE*HIEVARRKVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*L 617 R +KEG +GC * P*+S R +GW L DF** + SW+HRSM + Y+ * FH +CW*S+SKHI* +K FG * E*H A + +*V + EVC+ +V K + LQKGL DCRF *L Subject 4279 R*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*L 4653
Range 6: 4039 to 4239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 34/67(51%) | 0/67(0%) | Plus/Plus |
Query 3 K**EI*RFKALACWSVNF*HQTKRIDSCAWNIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQK 203 K**E+ K LA W + +*+ K ID AW IWGW+EF +QE HE++* I N+C + SKFNQK Subject 4039 K**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK 4239
Range 7: 4350 to 4652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 51/101(50%) | 0/101(0%) | Minus/Minus |
Query 314 NQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTFLRATSICHSVQHPK*LYLFENHMCFDKDHQQER*KRHCE*QEDIDRCNQEGIAELHQKSRNDQP 616 NQ+KRQS SPF*S +L +T QTS TY +A +CHS Q PK F +HMCFD DHQQ +*K H * IDRC QE HQKS + QP Subject 4350 NQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP 4652
Range 8: 4038 to 4256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 38/73(52%) | 0/73(0%) | Minus/Minus |
Query 2 HPFPGPF*LNLLEPA*VRQMLQIFLQIXXXXSCIGNSFQPQMFQAQLSILFV*CQKLTLQQAKALNR*ISHHL 220 HPF F*LNLL+ +Q L+I+ Q S*+SC NS QPQM+QA+ SI * Q Q+AK L+ * SHHL Subject 4038 HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL 4256
Range 9: 4467 to 4628 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 31/54(57%) | 0/54(0%) | Plus/Plus |
Query 431 KAHMILKKIELFWVLNRVTY*GCSKESHIGTTWRAGGL*IRCLIQDYPVTSKRA 592 KAHM K+I FW L+RVTY C + IG T +AGGL* +C QD VTSKRA Subject 4467 KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRA 4628
Range 10: 4038 to 4190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 27/51(53%) | 0/51(0%) | Plus/Plus |
Query 2 *VMRNLTIQSLGLLECQLLTSNKEN*QLCLEHLGLERVSYTRAS*RDLKEN 154 *VMR+ +Q+LG L LL ++ N* CL HLGL RVS TR S*+ L+ N Subject 4038 *VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN 4190
Range 11: 4224 to 4412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 34/63(54%) | 0/63(0%) | Plus/Plus |
Query 188 QIQSKGTWKWMKSVXXXXXXXXXXXXGMSLPLKSSLGKLQA*RLVIA*FLMKFSYSLLVTSIY 376 QIQSK KWM + + +Q QRR+ GM L+ SL KLQ *RL *FLM+ S LL TSIY Subject 4224 QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY 4412
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3577 to 4173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.5 bits(453) | 0.0 | 90/199(45%) | 0/199(0%) | Plus/Plus |
Query 1 ISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSM 597 IS +ND V S R L V+LGTFGAGKS L+K FM ++G+ +T+VSPRR LA D+++D + K++ + W V TFE FL + ++ G VI DEVQL+PPGY+DL L ++ I L GDPCQS YDS+KDR E SDI ++LE K Y YN+ SRRFVN ++ RLPC + + Subject 3577 ISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPCTLDESKL 4173
Range 2: 3840 to 4157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 44/106(42%) | 0/106(0%) | Minus/Minus |
Query 264 KLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQ 581 ++ G S + FT RL L LY SS L +SL S K+ LSF S L GSP+++M R RS PGG S TSS IT P + R SKV T Q Subject 3840 RVHGRRFS*LRFTKRRLKML*LYSLFSSILQISLSSNAKLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALPVRIFIARSRNFSKVQTCQ 4157
Range 3: 3673 to 3867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 21/65(32%) | 0/65(0%) | Minus/Minus |
Query 97 EDFKGNDIPXXXXXXXXXXXXXXFIHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPK 291 E + D+P L L F + V + +C*+PPR Y +F S+HE L * L K Subject 3673 EFLESADLPVLALSFGLTFPPAHAVQLHVRGEFLC*TPPRAHVRYAPTFVSMHEFLK*SALPRSK 3867
Range 1: 4208 to 4555 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 62/116(53%) | 0/116(0%) | Plus/Plus |
Query 271 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADY 618 V+TFE+FL + +K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQS YDS+ DR + SDI+ +L GKSYRYN+ S+RF NP+F SRLPC+ +T +Y Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEY 4555
Range 2: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 32/68(47%) | 0/68(0%) | Plus/Plus |
Query 55 SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKK 258 ++I +R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K + GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 3: 4207 to 4365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 26/53(49%) | 0/53(0%) | Minus/Minus |
Query 270 QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT 428 QGSPAR S + R RS *PGG S* SS IT P +R +SKV+T Subject 4207 QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST 4365
Range 1: 4363 to 4710 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 58/116(50%) | 0/116(0%) | Plus/Plus |
Query 271 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADY 618 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YDS DR I +SDI+R+L G++Y++N+ S+RF NP+F RLPCN K +T +Y Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEY 4710
Range 2: 4153 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 29/50(58%) | 0/50(0%) | Plus/Plus |
Query 61 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 210 + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4153 VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 3: 4161 to 4280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 20/40(50%) | 0/40(0%) | Minus/Minus |
Query 69 ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 188 AR LGET V FP D M L R+L P P VP N L Subject 4161 ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL 4280
Range 4: 4506 to 4706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 29/67(43%) | 0/67(0%) | Minus/Minus |
Query 414 SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA 614 S+ + V KL G+L + GF N L L L P + L MSL KI LS S L*QGSPA Subject 4506 SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA 4706
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 4359 to 4706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 58/116(50%) | 0/116(0%) | Plus/Plus |
Query 271 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADY 618 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G+SY++N+ S+RF NP+F RLPCN K +T +Y Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEY 4706
Range 2: 4149 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 29/50(58%) | 0/50(0%) | Plus/Plus |
Query 61 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 210 + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4149 VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 3: 4502 to 4702 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 31/67(46%) | 0/67(0%) | Minus/Minus |
Query 414 SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNMSLCSAPKIALSF*ESYVL*QGSPA 614 S+ + V L+LQGNL N GF NL L L L P L +SL K+ LS +S L*QGSPA Subject 4502 SSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA 4702
Range 4: 4157 to 4264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/36(50%) | 0/36(0%) | Minus/Minus |
Query 69 LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 176 LGET V FP D M L ++LFP PNVP ++ L Subject 4157 LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL 4264
Range 5: 4358 to 4462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 16/35(46%) | 0/35(0%) | Minus/Minus |
Query 270 RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT 374 +S+*PGG S* SS T *P+ SKV T Subject 4358 KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT 4462
Range 6: 4359 to 4688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 32/110(29%) | 0/110(0%) | Minus/Minus |
Query 271 SHGALFEVTG*S*IKHRIYKPPALQVVPI*LSFEQPQYVTLFSTQNSSIFLRIICALTRITSKRDESVTANNKKT*IDVTRRE*LNFIKNHAMTSL*ACNFPKEDFKGND 600 S L EV S +KH I +P + + E +T ++++ I +I LTR+TS + + K I + R+ LNFI ++++T L A E FK D Subject 4359 SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD 4688
Nucleotide Sequence (337 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
229.3 | 725.3 | 46% | 1.072e-59 | 40% | NC_001948 | |
87.7 | 87.7 | 24% | 4.419e-17 | 43% | NC_009892 | |
87.2 | 87.2 | 24% | 6.071e-17 | 46% | NC_018714 | |
86.8 | 86.8 | 24% | 8.34e-17 | 45% | NC_014821 | |
85.8 | 85.8 | 24% | 1.574e-16 | 45% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3326 to 3658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 92/111(83%) | 0/111(0%) | Minus/Plus |
Query 3 STDGLALKAGIRSFVESESLENPSMSAQTVLRQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD 335 STDGLALKAGIRSFVESE L +P +SA + +QL +NAYAENEMIALFCIRHHVR ++ITPEYEVSWKFG+ EWPLCGILCL+SNHFQP APLNGCMITAIASALGRREVD Subject 3326 STDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVD 3658
Range 2: 3325 to 3660 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.1 bits(391) | 0.0 | 82/112(73%) | 0/112(0%) | Plus/Minus |
Query 1 TSTSRLPSAEAMAVIMQPLRGAQG*K*FDCKHKIPHRGHSLSPNFQLTSYSGVIIISLT*CLMQNKAIISFSA*AFLLSCLKTVWADIDGFSRDSLSTKERMPAFRASPSVL 336 TSTSRLPSAEAMAVIMQP GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LT C MQN AIISFSA*AF +CL+ A+ G ++ SLSTK+R+PAFRASPSVL Subject 3325 TSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVL 3660
Range 3: 3334 to 3660 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 46/109(42%) | 0/109(0%) | Minus/Plus |
Query 1 WACSESRHTFFR*K*IS*KSIYVSPNRFKAAQ*KCLCRERNDSLILH*ASCEADDYYSRI*GELEVWR*RVASVWNLMLAVKSFSTLGPS*WLHDYSHCLRAWQT*SGC 327 W C + R++ FR +* KS SP+ F +CLCRE +D +ILH A +A ++RI* LE+ VA +WN + +KS T+ P+ WLHD+SHC W+ *S C Subject 3334 WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*C 3660
Range 4: 3359 to 3658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 43/100(43%) | 0/100(0%) | Plus/Minus |
Query 3 IHFTSAKRGGNGCNHAAIKRGPRLKMI*LQA*DSTQRPLAISKLPTHLIFWSNNHQPHMMPNAE*GYHFVLCISIFTELP*NGLG*HRWIFKRFTFNERT 302 I+FT +K NGC+HA I+ G L++I* +A +ST PL + PT+ IFW ++++P+++PNAE* H +L ISI +L N G* W ++ T +ER+ Subject 3359 INFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERS 3658
Range 5: 3363 to 3659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 42/99(42%) | 0/99(0%) | Plus/Minus |
Query 2 HPLHVCQARRQWL*SCSH*EGPKVENDLTASIRFHTEATRYLQTSNSPHILE**SSASHDA*CRIRLSFRSLHKHFY*AALKRFGLT*MDFQEIHFQRK 298 H LH Q +QWL*SC+H G V +DL FH AT + SN HIL * A A CRI S S HKH K GL +D H RK Subject 3363 HQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRK 3659
Range 6: 3333 to 3590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 34/86(40%) | 0/86(0%) | Minus/Plus |
Query 71 MGLL*KQAYVLSLKVNLLKIHLCQPKPF*GSSVKMLMQRTK**PYSALGIM*G**LLLQNMR*VGSLEIASGLCVESYACSQIIFN 328 M L *+ + LS +V+ + + QP+ F + +MLM R +* YSA G *G * QNM+ VG+ SG VE +A +QI N Subject 3333 MDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSN 3590
Range 1: 3320 to 3565 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 35/82(43%) | 0/82(0%) | Minus/Plus |
Query 3 VLRQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD 248 +LRQ+S + +AE E +A FC + ++L +++ V+W F ++ L Q NHF P P+NGC++ AIASALGRRE+D Subject 3320 LLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREID 3565
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3472 to 3711 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/80(46%) | 0/80(0%) | Minus/Plus |
Query 3 RQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD 242 +QL N +AE E +A FC + +RL ++ E +W F E L Q NHF+P P+NGC+I AIASAL RREVD Subject 3472 KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVD 3711
Range 1: 3475 to 3714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.8 bits(183) | 0.0 | 36/80(45%) | 0/80(0%) | Minus/Plus |
Query 3 RQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD 242 +QL N +AE E +A FC + ++L ++ E +W F E L Q NHF+P P+NGC+I AIASAL RREVD Subject 3475 KQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVD 3714
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3471 to 3710 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 36/80(45%) | 0/80(0%) | Minus/Plus |
Query 3 RQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD 242 +QL N +AE E +A FC + +RL ++ E +W F E L Q NHF+P P+NGC+I AI+SAL RREVD Subject 3471 KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVD 3710
Nucleotide Sequence (464 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
265.0 | 905.4 | 28% | 3.046e-70 | 46% | NC_001948 | |
89.5 | 208.2 | 33% | 2.165e-25 | 38% | NC_009087 | |
83.1 | 124.9 | 22% | 2.866e-22 | 41% | NC_004667 | |
62.9 | 136.1 | 21% | 2.014e-20 | 52% | NC_008020 | |
75.3 | 118.1 | 16% | 3.152e-20 | 48% | NC_024449 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2330 to 2716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.0 bits(572) | 0.0 | 105/129(81%) | 0/129(0%) | Plus/Plus |
Query 72 GGSHKSLGWPKFMDEILSSAGGRSYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATFTISKARNLVEGNYCSQVIRPGEFFEMPGGMQNNYFHGVSNCGNGRVSMTFRRQKLEDEDQVF 458 GGSH SLGWPKFMD+ILSS GGR+YYNSCL Q YEENSKLALHKDDESCYE GHKVLT+NL+GSATFTISK+RNLV GN+CS I P EFFEMP GMQ NYFHGVSNC GRVS+TFRRQKLED+D +F Subject 2330 GGSHTSLGWPKFMDQILSSTGGRNYYNSCLAQIYEENSKLALHKDDESCYEIGHKVLTVNLIGSATFTISKSRNLVGGNHCSLTIGPNEFFEMPRGMQCNYFHGVSNCTPGRVSLTFRRQKLEDDDLIF 2716
Range 2: 2329 to 2706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.1 bits(450) | 0.0 | 99/126(79%) | 0/126(0%) | Minus/Minus |
Query 71 SSSSNFWRLKVMETLPFPQLETPWK*LFCIPPGISKNSPGLIT*LQ*LPSTKFRALLIVKVAEPTKLMVKTLCPVS*QLSSSLCRANLEFSS*R*TKQEL**LRPPAELRISSMNFGHPKLL*LPP 448 SSSSNFWRLKV +T P QLETPWK*L C+P GISKNS G I LQ*LP TKFR LLIVKVAEP KL VKTLCP+S*QLSSSL RAN EFSS* * + EL**LRPP ELRI SMNFGHPKL+ LPP Subject 2329 SSSSNFWRLKVSDTRPGVQLETPWK*LHCMPLGISKNSFGPIVRLQ*LPPTKFRDLLIVKVAEPIKLTVKTLCPIS*QLSSSL*RANFEFSS*I*ARHEL**LRPPVELRI*SMNFGHPKLVWLPP 2706
Range 3: 2340 to 2714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 58/125(46%) | 0/125(0%) | Minus/Minus |
Query 82 RPDPHLPTFGV*KSWKPSRFHNWRLHGSNYSAYPRASQRIHQA*SPDCNNCPLPNFGPCLL*KWLSRLN*WLRLCVRSHSSSHHPCAGLIWSSPHNAEPNRNCNSCAPQQN*GFHP*TLAIPSSC 456 R + HLPTFG *+S P+ +NW+ HGSN A P A ++ H A CN+ P PNF *K LSRLN* +LC + HS+SHHP I + PH +EP NC++ Q + P*TLA S C Subject 2340 RSNHHLPTFGA*RSAIPALAYNWKPHGSNCIACP*AFRKTHLAQLSGCNDYPQPNFATY***KLLSRLN*QSKLCAQFHSNSHHPYEEPILNFPHRSEPGMNCSNYVHQWSLESDP*TLATLSLC 2714
Range 4: 2339 to 2716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 60/126(48%) | 0/126(0%) | Minus/Minus |
Query 81 KDLILIFQLLASESHGNPPVSTIGDSMEVIILHTPGHLKEFTRPNHLTAIIALYQISGLAYCESG*AD*IDG*DFVSGLIAALIILVQG*FGVLLITLNQTGIVIAAPPSRTKDFIHELWPSQALV 458 +D I+IFQLLA + PP TIG+ MEVI LH P H ++ PN A+I QIS L ES *AD*I+ +FV IA LIIL++ F + LI L+Q IV+ S + IHELWP A V Subject 2339 EDQIIIFQLLAPKGQRYPPWRTIGNPMEVIALHAPRHFEKLIWPNCQAAMITPNQISRLTNSESC*AD*INSQNFVPNFIATLIILMKSQF*IFLIDLSQA*IVVITSTSGA*NLIHELWPP*ACV 2716
Range 5: 2340 to 2708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 58/123(47%) | 0/123(0%) | Plus/Plus |
Query 82 TRAWDGQSSWMKSLVLLGGAAITIPVWFSVMRRTPN*PCTRMMRAAMRPDTKS*PSI*SAQPLSQ*ARPEIW*RAIIAVR*LGLVNSLRCPGVCRIITSMESPIVETGGFP*LSDAKSWKMRI 450 T+A GQSSW++ L TI W MR+ N RMMR AM+ TK * I*SAQ LS EIW IIA LG ++ +C G C ITSM PIV GG+ * AKSWKM I Subject 2340 TQA*GGQSSWIRF*APLVDVITTIHAWLRSMRKIQNWLFIRMMRVAMKLGTKF*LLI*SAQQLSLLVSREIWLGVIIAA*QLGQMSFSKCLGACNAITSMGFPIVRQGGYR*PLGAKSWKMMI 2708
Range 6: 2335 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.2 bits(208) | 0.0 | 58/123(47%) | 0/123(0%) | Plus/Plus |
Query 77 QSQELGMAKVHG*NP*FCWGAQLLQFLFGSAL*GELQISPAQG**ELL*DRTQSLNHQFSRLSHFHNKQGPKFGRGQLLQSGD*AW*IL*DARGYAE*LLPWSLQLWKREGFHDFQTPKVGR* 445 + +L +AKVHG + W LLQF+ GS L*G+ +I + G**ELL*+ QS + F+RLS+FH KFG G LQ + A *+ +A G+A LLPW QL+ R G D PKVGR* Subject 2335 EPHKLRVAKVHGSDSKLHWWT*LLQFMPGSDL*GKFKIGSS*G**ELL*NWAQSFDC*FNRLSNFHY**VAKFGWG*SLQPDNWAK*VFRNA*GHAMQLLPWGFQLYARAGIADL*APKVGR* 2703
Range 1: 2281 to 2493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 32/71(45%) | 0/71(0%) | Plus/Plus |
Query 60 FGH*GGSHKSLGWPKFMDEILSSAGGRSYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATF 272 + + GG H+SL WP ++ + G YN CLVQRY+EN+K+ +H DDE C+ TG + T+N+ G ATF Subject 2281 YSYNGGEHQSLNWPGWISVWMRLVGIPEIYNCCLVQRYDENAKIGMHSDDEECFVTGGPIYTVNIEGRATF 2493
Range 2: 2548 to 2670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 18/41(44%) | 0/41(0%) | Plus/Plus |
Query 330 PGEFFEMPGGMQNNYFHGVSNCGNGRVSMTFRRQKLEDEDQ 452 PG+ FEMPGG Q + H V R+S+TFR K +D+ Subject 2548 PGDLFEMPGGFQETHKHAVFETSKDRLSVTFRLMKQICQDE 2670
Range 3: 2292 to 2501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 29/70(41%) | 0/70(0%) | Minus/Minus |
Query 71 LIVKVAEPTKLMVKTLCPVS*QLSSSLCRANLEFSS*R*TKQEL**LRPPAELRISSMNFGHPKLL*LPP 280 +++KVA P+ L V PV+ SSSLC FSS*R TKQ+L* P L + + G +L PP Subject 2292 VVMKVARPSILTVYMGPPVTKHSSSSLCIPIFAFSS*RCTKQQL*ISGMPTSLIQTLIQPGQFRLWCSPP 2501
Grapevine leafroll-associated virus 3, complete genome
Range 1: 4887 to 5090 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 30/68(44%) | 0/68(0%) | Plus/Plus |
Query 72 GGSHKSLGWPKFMDEILSSAGGRSYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATFT 275 GGSH S GWP+ +++IL++ S ++ CLVQ+Y+ + H DDE CY + + +LT+NLVG A F+ Subject 4887 GGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS 5090
Range 1: 2289 to 2426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 24/46(52%) | 0/46(0%) | Plus/Plus |
Query 141 SYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATFTI 278 +YYNSCL Q YE ++ L H DDES +E G ++ T+NL GSA F + Subject 2289 NYYNSCLYQVYEADATLNWHSDDESLFEKGGRIATVNLSGSAVFHV 2426
Cherry twisted leaf associated virus isolate CTLV_8431, complete genome
Nucleotide Sequence (332 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
210.9 | 860.5 | 33% | 3.42e-54 | 50% | NC_001948 | |
59.7 | 207.9 | 35% | 1.214e-20 | 37% | NC_014821 | |
59.3 | 194.6 | 48% | 3.576e-19 | 38% | NC_003462 | |
52.4 | 127.4 | 20% | 4.168e-18 | 38% | NC_025388 | |
51.5 | 126.5 | 17% | 7.698e-18 | 42% | NC_028868 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 7049 to 7378 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 84/110(76%) | 0/110(0%) | Minus/Plus |
Query 3 LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*NAFSATCLLG*DHNSINYWFGHWVGSALLKEIKSTIFRRQYSPAP 332 LICFGKEAVDLAVAHNS+FKLPCEVRGSTFNVVTLLKSRDPT ED+HWFY+AATRHR KLIIMQ*+AFSA C LG +HNSI+ W GHW +A +E+KST+FR Q+ P Subject 7049 LICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIP 7378
Range 2: 7051 to 7362 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 71/104(68%) | 0/104(0%) | Plus/Minus |
Query 19 CLLNMVDLISLRSAEPTQCPNQ*LMELWS*PSRQVAEKAFYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQM 330 C LN VDL S +A QCP+Q MELW P+ Q AEKA YC+II+ CLVAA *NQCLSS VGSLDF VTTL VEP TSQGNL SELCATARSTAS PK + Subject 7051 CPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHI 7362
Range 3: 7053 to 7379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 72/109(66%) | 0/109(0%) | Minus/Plus |
Query 2 FALERRP*I*QLHTILTSNCPARCGVQHLTL*RY*SPGIQLQKISIGSTLQPQGIEVN***CSKMPFQQPAYWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP 328 +AL RR I L T L SN + VQ LT * +*+ IQ Q+I G TL Q N** CSKMPFQQPA WAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQ P Subject 7053 YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFP 7379
Range 4: 7055 to 7366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.5 bits(285) | 0.0 | 61/104(59%) | 0/104(0%) | Plus/Minus |
Query 15 ILSPEYGRFDFLKKCRTNPMPKPIVNGVMVLAQ*AGC*KGILLHYYQFTSMPCGCNVEPMLIF*SWIPGLQ*RHNVKC*TPHLAGQFEVRIVCNC*IYGLLSKA 326 +LSPE GRFDFL+KC T+PMPKP VNGVMV AQ AGC*KGILLH YQF + C NV+P+ I WI Q ++VK *T + FE R+V N I+ LL+KA Subject 7055 MLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKA 7366
Range 5: 7051 to 7377 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 56/109(51%) | 0/109(0%) | Minus/Plus |
Query 4 HLLWKGGRRSSSCTQF*LQIALRGAGFNI*RCDVIEVQGSNFRR*ALVLRCSHKASK*TDNNAVKCLFSNLPTGLRP*LH*LLVWALGWFCTS*GNQIYHIQETIFTSS 330 ++LW GG S C Q *+QI L FN *R + E++ SN R *ALVL C +K DN+AV+CLFS+L G +P*LH* L WALG C *G+QIY IQ T +S Subject 7051 NMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINS 7377
Range 6: 7056 to 7376 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 53/107(50%) | 0/107(0%) | Plus/Minus |
Query 5 ELVNIVS*IW*I*FP*EVQNQPNAQTNS*WSYGLSPVGRLLKRHFTALLSVYFDALWLQRRTNAYLLKLDPWTSITSQR*MLNPAPRRAI*SQNCVQLLDLRPPFQS 325 EL+++V *I *I* P ++Q++PNAQ N WSYG P+ RLLKRH TA LS+ L Q +T+AY L LD S +R* LN + I* Q+C Q D PP+QS Subject 7056 ELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQS 7376
Range 1: 7347 to 7481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 23/45(51%) | 0/45(0%) | Minus/Plus |
Query 2 MPFQQPAYWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP 136 MPF QP ++K++ P+ IG + LVL L +S LP GDNIH LP Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLP 7481
Range 2: 7148 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 17/39(44%) | 0/39(0%) | Minus/Plus |
Query 216 LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSR 332 +IC KE D H+ ++KLPC+VRG+TF+ VT + + Subject 7148 IICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 3: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/15(60%) | 0/15(0%) | Minus/Plus |
Query 144 FYVAATRHRSKLIIM 188 +YVA TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 4: 7150 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 22/59(37%) | 0/59(0%) | Plus/Minus |
Query 154 SLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQM 330 +L CLV+AT ++ + VT V PRT QGNL S C +S+ SF +Q+ Subject 7150 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQI 7326
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 7378 to 7518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 21/47(45%) | 0/47(0%) | Minus/Plus |
Query 2 SKMPFQQPAYWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQLP 142 + MPF QP ++K++ P+ +G+ + +VL L +S LP GDNIH LP Subject 7378 TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLP 7518
Range 2: 7185 to 7301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 15/39(38%) | 0/39(0%) | Minus/Plus |
Query 216 LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSR 332 +IC K D H+ ++K PC+VRG+TF++VT + + Subject 7185 IICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK 7301
Range 3: 7332 to 7373 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Plus |
Query 144 YVAATRHRSKLIIM 185 +VA TRHRSKL+++ Subject 7332 FVALTRHRSKLVLV 7373
Range 1: 6637 to 6756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 17/40(42%) | 0/40(0%) | Minus/Plus |
Query 213 LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRD 332 ++C+ KE DL H +D+K C++RGSTF++VT + S + Subject 6637 IVCYEKEVFDLLDRHGADYKKDCQIRGSTFDIVTFITSSE 6756
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 6602 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 17/40(42%) | 0/40(0%) | Minus/Plus |
Query 213 LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRD 332 ++C+ KE DL H +D+K C++RGSTF++VT + + D Subject 6602 IVCYEKEIFDLLDRHGADYKKYCQIRGSTFDIVTFITASD 6721
Nucleotide Sequence (363 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
107.4 | 153.3 | 48% | 5.906e-23 | 42% | NC_003462 | |
238.9 | 891.5 | 59% | 1.549e-62 | 55% | NC_001948 | |
105.5 | 105.5 | 32% | 2.104e-22 | 42% | NC_009892 | |
106.5 | 106.5 | 31% | 1.115e-22 | 44% | NC_018714 | |
106.5 | 154.3 | 46% | 1.115e-22 | 44% | NC_014821 |
Alignments
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6693 to 7052 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 50/120(42%) | 0/120(0%) | Plus/Plus |
Query 2 GVVLGVFGCIVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI 361 G + + ++ L+ F F L P+VVH VPGSGK++LI++ + + A T GVP+ N+ G YIK G +G +ILDEYLS ++GF+ LFSDPYQN AHFI Subject 6693 GYRVSIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI 7052
Range 2: 6857 to 7021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 24/55(44%) | 0/55(0%) | Minus/Minus |
Query 166 FW*GSENSTSKPEVSEIDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKA 330 FW*GSE P DKYSS M P P L+Y+P SGTP V A Subject 6857 FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTA 7021
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6569 to 6919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.9 bits(515) | 0.0 | 98/117(84%) | 0/117(0%) | Plus/Plus |
Query 11 LGVFGCIVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI 361 L + +VKALSAFEFVGVF VLK PVV+H VPGSGKSSLIRELISEDE FIAFTAGVPDSPNLTGRYIKPY+PGCAV GK+NILDEYLS+ D SGFDVLFSDPYQN+SIP+EAHFI Subject 6569 LSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFI 6919
Range 2: 6685 to 6918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 63/78(81%) | 0/78(0%) | Minus/Minus |
Query 127 MKCASLGMLTFW*GSENSTSKPEVSEIDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAIKASSSEMSSLIR 360 MKCASLGML FW GSENSTSKPE S DKYSSS+ FP TAHPG *GLMYLPVR GLSGTPAVKA+K SSSE+SSLI+ Subject 6685 MKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 6918
Range 3: 6600 to 6707 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 21/36(58%) | 0/36(0%) | Minus/Minus |
Query 42 QK*APLLGYFYRYLELYGQQLEI*AHKTHQQIQMRT 149 +K APLL YFY Y Y LEI*AH H Q QM T Subject 6600 RKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLT 6707
Range 4: 6560 to 6916 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 65/119(55%) | 0/119(0%) | Minus/Minus |
Query 2 EVCLSWNADILVRV*EQHIKARSIGDRQVLIKYVYFPLHCTPWSVGLDVPSCQIWTVWHTCCKGYKSLVFRNELPY*ATFTATWNSMDNNWRFKHTKHTNKFKCGQSLDDTTKHTQHNP 358 E+CL NAD+LV V EQHIK I D QVLIKY+ FP HCTPW + L+VPSC+I VW+TCC+ Y+ L+ N LPY* TFT T ++M++ W+FKHT++T K KC Q + +TQ P Subject 6560 EMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMP 6916
Range 5: 6676 to 6921 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 52/82(63%) | 0/82(0%) | Plus/Plus |
Query 118 *K*PNKGAHF*RRGFYSLYSRCARQSKSDRKVHQALRSRVCSARENKHT**VLVYLRYFWL*CAVLRPLPECQHSKRGTLHK 363 *K* NKGA+F F+S +SRC+RQ S RKVH AL SRVCSARE+ +T**VLV R+F *CAVL P+P+ QHS RGT H+ Subject 6676 *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQ 6921
Range 6: 6669 to 6917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 51/83(61%) | 0/83(0%) | Plus/Plus |
Query 111 VAVKVA**GSSFLKTRLL*PLQQVCQTVQI*QEGTSSPTLQGVQCKGK*TYLMSTCLSPILLALMCCSQTLTRMSAFQERHTS 359 V VKV **GS F + R+ * QQV QT I QEGT S LQGVQC+GK YLMSTC S I LMCCS+T T+ SAF +RH S Subject 6669 VVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHIS 6917
Range 7: 6756 to 6917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.7 bits(148) | 0.0 | 36/54(67%) | 0/54(0%) | Minus/Minus |
Query 198 *SVPLLEC*HSGKGLRTAHQSQKYRR*TSTHQVCLFSLALHTLERRA*CTFLSD 359 *+VPL EC* G G RTAHQ+ K TSTHQV SLALHTLE +A*CTFL D Subject 6756 *NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D 6917
Range 1: 6482 to 6832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 49/117(42%) | 0/117(0%) | Plus/Plus |
Query 11 LGVFGCIVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI 361 + V +V L + F ++ ++VH VPGSGK++LIRE ++ + AF+ G PD PN+ GRYIK G G ILDEYLS +GFD FSDP+QN AHF+ Subject 6482 VNVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFV 6832
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6688 to 7020 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 49/111(44%) | 0/111(0%) | Plus/Plus |
Query 29 IVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI 361 ++ L+ F F L P+VVH VPGSGK++LI++ + + A T GVP+ N+ G YIK G +G +ILDEYLS ++GF+ LFSDPYQN AHFI Subject 6688 VLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI 7020
Range 1: 6683 to 7015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 49/111(44%) | 0/111(0%) | Plus/Plus |
Query 29 IVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI 361 ++ L+ F F L P+VVH VPGSGK++LI++ + + A T GVP+ N+ G YIK G +G +ILDEYLS ++GF+ LFSDPYQN AHFI Subject 6683 VLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFI 7015
Range 2: 6820 to 6984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 25/55(45%) | 0/55(0%) | Minus/Minus |
Query 166 FW*GSENSTSKPEVSEIDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKA 330 FW*GSEN KP D+YSS M P P L+ +P F SGTP V A Subject 6820 FW*GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTA 6984