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Nucleotide Sequence (385 letters)

Query ID:ds2016-133_36
Query definition:No definition line
Query length:384
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
385

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
122.0 685.2 31% 1.021e-38 50% NC_030693

Alignments

Grapevine Red Globe virus isolate Graciano-T101, complete genome

Sequence ID: Length: 6863 Number of Matches: 10

Range 1: 189 to 332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 41/48(85%) 0/48(0%) Plus/Plus
Query      236  MASFTKLAISFPASSVPYSEEFPNHSFWSTPGSNVFTPYPNMTPTNFP  379
                MAS  KLAISFPASSVPYS+EFP+HSFW+TPGSN FTPYP+MTPTNFP
Subject    189  MASSNKLAISFPASSVPYSKEFPDHSFWATPGSNDFTPYPSMTPTNFP  332

Range 2: 1 to 69 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 23/23(100%) 0/23(0%) Plus/Plus
Query       48  VYLNQPHLDSGYLAHIRDLTCPC  116
                VYLNQPHLDSGYLAHIRDLTCPC
Subject      1  VYLNQPHLDSGYLAHIRDLTCPC  69

Range 3: 78 to 119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/14(86%) 0/14(0%) Plus/Plus
Query      125  RQVSFSLFSSQP*R  166
                RQVSF LFS QP*R
Subject     78  RQVSFFLFSFQP*R  119

Range 4: 3 to 122 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 36/40(90%) 0/40(0%) Minus/Minus
Query       50  NALRLRREKGKGDLSKLKQGQVRSRM*AR*PESR*GWLRY  169
                NALRL+REK + DLSKLKQGQVRSRM*AR*PESR*GWLRY
Subject      3  NALRLKREKEERDLSKLKQGQVRSRM*AR*PESR*GWLRY  122

Range 5: 179 to 292 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 32/38(84%) 0/38(0%) Minus/Minus
Query      226  TFEPGVDQKEWLGNSSE*GTDEAGKEMASLVKEAIEDT  339
                +FEPGV QKEW GNS E*GTDEAGKEMASL++EAIEDT
Subject    179  SFEPGVAQKEWSGNSLE*GTDEAGKEMASLLEEAIEDT  292

Range 6: 1 to 330 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 83/110(75%) 0/110(0%) Minus/Minus
Query       48  GSWWGSCWDRG*KHSNRGWTRRNGWGIPRSKEXXXXXXXXXXXXXRPLRIRVGEGKGKRRRIGSERTLXXXXXXXXXXXXXRLVEAEARTS*ITNVSKITRIEMRLVEIH  377
                G+WWGS   R * HSNR   RRNG GIP SKERM++G+KWRA  +RPL+IRV EGK  R +  SERTLRERAKAEKRKG++RLVEAEARTS*ITNVSKITRIEMRLVEIH
Subject      1  GNWWGSWRGRE*NHSNRELPRRNGRGIPWSKERMRQGKKWRACWRRPLKIRVSEGKRIRIKRRSERTLRERAKAEKRKGRKRLVEAEARTS*ITNVSKITRIEMRLVEIH  330

Range 7: 125 to 331 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 46/69(67%) 0/69(0%) Plus/Plus
Query      172  RNVXXXXXXXXXXXXXXTRILNGLFHQARHFLPRFIRSLLRGIPQPFLLVHPRFECFHPLSQHDPHQLP  378
                RNVLSL + +L  FPS TRI NGL  QARHF P  IRSLL+GIP+PFLL + RFE FH L  HDPHQ P
Subject    125  RNVLSLLLFILILFPSLTRIFNGLLQQARHFFPCLIRSLLQGIPRPFLLGNSRFE*FHSLPLHDPHQFP  331

Range 8: 3 to 32 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 10/10(100%) 0/10(0%) Plus/Plus
Query       50  VSQPASSRFW  79
                VSQPASSRFW
Subject      3  VSQPASSRFW  32

Range 9: 2 to 82 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 27/27(100%) 0/27(0%) Minus/Minus
Query       49  CRS*SKDKLDHECEQDNQNRDEAG*DT  129
                CRS*SKDKLDHECEQDNQNRDEAG*DT
Subject      2  CRS*SKDKLDHECEQDNQNRDEAG*DT  82

Range 10: 5365 to 5412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 8/16(50%) 0/16(0%) Minus/Minus
Query      300  G*KHSNRGWTRRNGWG  347
                G K S  GW +  GWG
Subject   5365  GEKASPLGWAKWGGWG  5412