Nucleotide Sequence (518 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
106.0 | 106.0 | 33% | 3.706e-21 | 30% | JN997472.1 | |
106.0 | 106.0 | 33% | 3.706e-21 | 30% | JN997474.2 | |
106.0 | 106.0 | 33% | 3.706e-21 | 30% | NC_020903.1 | |
119.7 | 119.7 | 31% | 2.697e-25 | 31% | JN997473.1 | |
122.0 | 122.0 | 28% | 5.511e-26 | 32% | LC075489.1 |
Alignments
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997472.1 Length: 4655 Number of Matches: 1
Range 1: 1145 to 1657 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 51/171(30%) | 0/171(0%) | Plus/Plus |
Query 5 WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY 517 +MG++ + NYAS WR+AF+ +E +L RAA+ SV GKE+ T N + +++++ + V +V ++E GYP S + V VSG+L + HL + + E + P+DALR+A YR+FGHE+ + + + P +Y Subject 1145 FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY 1657
Xanthophyllomyces dendrorhous virus L2 capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997474.2 Length: 3666 Number of Matches: 1
Range 1: 182 to 694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 51/171(30%) | 0/171(0%) | Plus/Plus |
Query 5 WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY 517 +MG++ + NYAS WR+AF+ +E +L RAA+ SV GKE+ T N + +++++ + V +V ++E GYP S + V VSG+L + HL + + E + P+DALR+A YR+FGHE+ + + + P +Y Subject 182 FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY 694
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: NC_020903.1 Length: 4655 Number of Matches: 1
Range 1: 1145 to 1657 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 51/171(30%) | 0/171(0%) | Plus/Plus |
Query 5 WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPYQPNTPNTLY 517 +MG++ + NYAS WR+AF+ +E +L RAA+ SV GKE+ T N + +++++ + V +V ++E GYP S + V VSG+L + HL + + E + P+DALR+A YR+FGHE+ + + + P +Y Subject 1145 FMGLHAILSNYASRHENWRSAFLHSHEELAILHDRTVRAALTSVITGKEMVTFMNPNLFVSYDVTPMVNVSKVSFEEVLERGYPSSLPVHGVVPMVSGSLFLSANASDVASQCHLEQGMKVTVDEYGTVSPEDALRVAQMYRMFGHELEIRSEKTEEIHELFAPVQECVIY 1657
Xanthophyllomyces dendrorhous virus L1b capsid protein (CP) and RNA dependent RNA polymerase (RdRp) genes, complete cds
Sequence ID: JN997473.1 Length: 4619 Number of Matches: 1
Range 1: 1149 to 1634 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 51/162(31%) | 0/162(0%) | Plus/Plus |
Query 5 WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHEVVFEDLSSRGLFTPY 490 W+GIY + N+A +W +AF+S + +L + R AM S+ GKE + +++C+L ++ + V+++ I+ +P VPA+VSG+LL G V +Y + HL Q I + D ++ ++A LAN+YR+FG++V+ E S ++ Y Subject 1149 WIGIYGMVSNFAEDCSDWTDAFISSDAELGILSTVEARPAMISLVTGKETNSCFSNNCFLTYDLSGMYGVKQLIVDEKIDPNHPGVILFDTVPAFVSGSLLMGAVATDYPVLKHLEPHQHIKVERDGLLGAREAAMLANSYRLFGNDVIIEHFRSAEVYPTY 1634
Red clover powdery mildew associated totivirus 4 CP, RdRp genes for capsid protein, RNA dependent RNA polymerase, complete and partial cds, isolate: RPaTV4_6052
Sequence ID: LC075489.1 Length: 4455 Number of Matches: 1
Range 1: 1122 to 1562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 47/147(32%) | 0/147(0%) | Plus/Plus |
Query 5 WMGIYVAIENYASGLHEWRNAFVSLNEATRVLMSPIGRAAMCSVPFGKEVPTVANDSCWLAFEFGHLAEVQEVKATRLIEEGYPVSKRLTCVPAYVSGALLAGCVVDEYDGISHLSGMQSIPIGEDFVMEPKDALRLANAYRVFGHE 445 W+G++ + NY+ + +WR A S + +L +P RAA+ S+ GKE+ T N++C + ++ +++ V+ + ++E+GYP +L +P YVSG+L+ G V E ++HL S + ++P DA + A+ YR+FGH+ Subject 1122 WVGLHTLVSNYSRDMRDWRPAVESYDAELAILATPESRAALVSLVTGKEIFTCMNNNCHITYDLSNMSNVKHLDEYVVLEQGYPSKLKLDGLPPYVSGSLILGSVACELQEVAHLHSSYSFQVSSYNDLDPVDAGKAASTYRLFGHD 1562