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Queries

Nucleotide Sequence (575 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
58
116
174
232
290
348
406
464
522
575

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
436.4 2469.7 31% 1.055e-121 42% NC_004667
215.5 345.0 60% 3.218e-55 38% NC_022072
78.0 202.5 25% 7.726e-14 28% NC_016509
61.6 115.8 23% 7.138e-09 25% NC_005065
84.0 130.4 27% 1.244e-15 35% NC_029783

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 15029 to 15595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
436.4 bits(946) 0.0 184/189(97%) 0/189(0%) Minus/Minus
Query        8  ISVIQ*CEVEAVRSEPLRDAVLS*GSIRWLNFLLYK*SNGGVSKIPHEGSHSVGWRRIVFPS*YSFPYFRIT*VDFLLT*FGLHPIPVFDAYILYGRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTS  574
                ISVIQ*CEVEAVRSEPLRDAVLS*GS RWLNFLLYK*SN GVSKIPHEGSHSVGWRR VFPS*YSFPYFRIT*VD LLT*FGLHPIPVFDAYILY RVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTS
Subject  15029  ISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTS  15595

Range 2: 15028 to 15594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
433.6 bits(940) 0.0 186/189(98%) 0/189(0%) Plus/Plus
Query        7  GRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYRKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFYSHHHYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI  573
                GRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLY KEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVF SHH+YSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI
Subject  15028  GRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI  15594

Range 3: 15029 to 15595 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
433.6 bits(940) 0.0 185/189(98%) 0/189(0%) Plus/Plus
Query        8  GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  574
                GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPYCFDFALLDNRY
Subject  15029  GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRY  15595

Range 4: 15028 to 15594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
413.0 bits(895) 0.0 184/189(97%) 0/189(0%) Minus/Minus
Query        7  YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPP  573
                YLLSSSAKSKQYGVNLFGTPCLARAV+AG*IFFSISRV+VV* KYLMKDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPP
Subject  15028  YLLSSSAKSKQYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPP  15594

Range 5: 15027 to 15596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
396.5 bits(859) 0.0 185/190(97%) 0/190(0%) Plus/Plus
Query        6  REV*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLP*RI*ASKTGIGWRPN*VKRKST*VIRK*GKLY*EGNTMRLQPTLCDPS*GIXXXXXXXXXXRRKFSQRILP*LSTASRRGSLRTASTSHYWITDI  575
                REV*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTL *RI*ASKTGIGWRPN*VKR+ST*VIRK*GKLY*EGNT+RLQPTLCDPS*GILLTP LLYL*RRKFSQR+LP*LSTASRRGSLRTASTSHYWITDI
Subject  15027  REV*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDI  15596

Range 6: 15027 to 15281 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.5 bits(429) 0.0 85/85(100%) 0/85(0%) Minus/Minus
Query        6  WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLHLP  260
                WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLHLP
Subject  15027  WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLHLP  15281

Range 7: 15423 to 15533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 35/37(95%) 0/37(0%) Minus/Minus
Query      402  A*LGQYTLAEFSSL*VE*WWCE*NTS*RIAQCWLETH  512
                A*LGQYTLAEFSSL*VE* WCE NTS*RIAQCWLETH
Subject  15423  A*LGQYTLAEFSSL*VE**WCEQNTS*RIAQCWLETH  15533

Range 8: 15336 to 15368 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 11/11(100%) 0/11(0%) Minus/Minus
Query      315  SFDLIRSPPYT  347
                SFDLIRSPPYT
Subject  15336  SFDLIRSPPYT  15368

Range 9: 13935 to 14069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/45(42%) 0/45(0%) Plus/Plus
Query      416  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  550
                N VR ++ YFT T IT  +  K+      +A+HGVP +F PY  D
Subject  13935  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  14069

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 3

Range 1: 15940 to 16494 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
215.5 bits(464) 0.0 88/185(48%) 0/185(0%) Plus/Plus
Query       20  PSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  574
                P+ +L+ + +   + +L+  RG+     P+ V +I E+DIYDER++   EAL++N+RL  L+ S G   +  D GN +V +IQLF+LYSTVK+ ++   Y++   L  K+V LS+  VR AIL G  D S TN VR++MRY+ +T ++LL+  K+QPAYTA AKHGVPKRF P+CFDFA+LD+RY
Subject  15940  PTSELEKLQMVGTLDKLVVERGKAIYDTPEKVFNIRESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRY  16494

Range 2: 16155 to 16493 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 54/113(48%) 0/113(0%) Minus/Minus
Query      235  YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPIS  573
                YLLS  AKSKQ G NLFGTPCLA AV AG       R+  V   YL+  RT+LV + S  P +IA LT+  LK T F  + +  LY  L++   TV  S KS I  T  FP+S
Subject  16155  YLLSRIAKSKQNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFPLS  16493

Range 3: 14853 to 14987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 17/45(38%) 0/45(0%) Plus/Plus
Query      416  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  550
                N VR ++ +FT T +T ++  K+ P    +A+HGVP +F  Y  D
Subject  14853  NPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLD  14987

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 15096 to 15410 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 34/105(32%) 0/105(0%) Plus/Plus
Query      248  MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALL  562
                + + MIQ  + +ST  N+   +  +V+  L  +K  + ++E+R  I      +   N VR +MR+F+ TTI+L+    + P Y  +A+HGV  +F PY FD+ +L
Subject  15096  LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCIL  15410

Range 2: 13685 to 13882 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 25/66(38%) 0/66(0%) Plus/Plus
Query      356  LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDF  553
                L+Y +V+ A++ G   ++  N +R + R F+ T + L++  K++P      +HGVPKRF PY FDF
Subject  13685  LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDF  13882

Range 3: 16398 to 16829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 41/144(28%) 0/144(0%) Plus/Plus
Query      143  DERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  574
                +  YL    A +I   L RL L+        D   ++V +IQ  V Y T  +   K    V      K V L +  VR  I+        TN +R +MR+++  TI L+    ++P     AK G+        FD+ LLD R+
Subject  16398  ESTYLSKDVAKRITLALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF  16829

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 2

Range 1: 8772 to 8978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 25/69(36%) 0/69(0%) Plus/Plus
Query      359  SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD  565
                +Y+EV   I     +    N VR+F+R+ +   I L+I   I+P    +AK+G+P++F PYCFDF++++
Subject   8772  NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVN  8978

Range 2: 13578 to 13967 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 33/130(25%) 0/130(0%) Plus/Plus
Query      176  QINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD  565
                Q++  + +L     GS   + +   +V + Q+ V+  T  N    D       +  K+   +Y  VRE+I          N +R FMR  + + +  L    I+P    ++K GVP  F PY  D  + D
Subject  13578  QLSPSITKLCNEVWGSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPD  13967

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 15317 to 15640 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 38/108(35%) 0/108(0%) Plus/Plus
Query      251  IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  574
                ++A+IQ  V YSTV++  + D   V  +   +     Y++  + I   +     +N +R +MR+++ TTI+L+    I+P Y   A HGV K + PYCFDF  LD+RY
Subject  15317  LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRY  15640

Range 2: 14031 to 14165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 20/45(44%) 0/45(0%) Plus/Plus
Query      416  NTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFD  550
                N VR + R F+ + I+     KI+P    LA+HGV KRF  YC D
Subject  14031  NPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLD  14165

Nucleotide Sequence (723 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
73
146
219
292
365
438
511
584
657
723

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
557.3 3009.2 32% 5.459e-158 85% NC_004667
194.9 373.1 15% 3.313e-58 39% NC_022072
72.5 122.2 21% 3.45e-19 32% NC_029783
68.0 68.0 8% 1.125e-10 45% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 7

Range 1: 810 to 1523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
557.3 bits(1210) 0.0 228/238(96%) 0/238(0%) Minus/Plus
Query        1  VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR  714
                VILRKGKLFNRALNVPI+VKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTT+GWCWFNNERLRGEIYRRRCFSSSFS+GFLM +GFRSLK +RFAGTNILH+PSLNEERTFGWK  DVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR
Subject    810  VILRKGKLFNRALNVPIDVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFSIGFLMHLGFRSLKVIRFAGTNILHMPSLNEERTFGWKGGDVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR  1523

Range 2: 807 to 1523 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
522.0 bits(1133) 0.0 209/239(87%) 0/239(0%) Plus/Minus
Query        1  PV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIASDDSGFWDIGEINICALPPKGALFIERWYV*YVRARKPDGFQRSKAHAHQETYRKGR*EATASINFSPQPFVIKPTPPSGGAYKRPFAHTPQLNARQGNITPWGRIHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSPYERVLYFNRNIKGPVKQFPFPQDDN  717
                P+*GFFANHCVPLRKH+ QFRVQMGKQ RLVP YQ IGD RNDR*IDLLL+KGIGDGGQDLPSQPCPIASDDSGFWDIGEI++ ALPPKG LFIE W+V*YVRARKP+   RSKA  HQETYRKGR*EAT S+NFSPQP ++KPTPP GGAYKRPFAHTPQLNARQGNITPWG IHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSP ERVLY NRNIKGPVKQFPFPQDD+
Subject    807  PM*GFFANHCVPLRKHIAQFRVQMGKQCRLVP*YQSIGDTRNDR*IDLLLIKGIGDGGQDLPSQPCPIASDDSGFWDIGEIDVSALPPKGTLFIE*WHV*YVRARKPNDL*RSKAKVHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSPNERVLYINRNIKGPVKQFPFPQDDS  1523

Range 3: 805 to 1518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
506.0 bits(1098) 0.0 210/238(88%) 0/238(0%) Minus/Plus
Query        6  SLSSCGKGNCLTGPLMFLLK*RTRSYGLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*IRPQGVMLPCRALSCGVCAKGRLYAPPEGGVGLITKG*GEKFIDAVASHLPFR*VS*CAWALDR*KPSGLRARTYYTYHRSMKSAPLGGRAQMFISPMSQKPLSSLAIGHGWEGRSWPPSPMPLTKRRSIHLSFRASPIGWY*GTNRPCFPIWTRNCVTCFLKGTQ*FAKNPH  719
                +LSSCGKGNCLTGPLMFLL *RTRS+GLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*I+PQGVMLPCRALSCGVCAKGRLYAPP+GGVGL  +G*GEKF D VASHLPFR*VS*C  ALDR*+  GLRARTYYT H SMKS PLGGRA+  ISPMSQKPLSSLAIGHGWEGRSWPPSPMPL KRRSIH SFR SPI WY*GTNR CFPIWTRNC  CFLKGTQ*FAKNPH
Subject    805  TLSSCGKGNCLTGPLMFLLM*RTRSFGLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CTLALDR*RSLGLRARTYYTCHHSMKSVPLGGRAETSISPMSQKPLSSLAIGHGWEGRSWPPSPMPLIKRRSIHRSFRVSPIDWY*GTNRHCFPIWTRNCAICFLKGTQ*FAKNPH  1518

Range 4: 803 to 1522 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
484.0 bits(1050) 0.0 226/240(94%) 0/240(0%) Plus/Minus
Query        2  LCEGFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPATIAVFGTLGR*TSALFHPKVRSSLSDGMCSMFVPANLTAFNDLKPMRIKKPTEKEDEKQRRXXXXXXXXXXXNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILAHTNVFFTSIGTLRALLNNFPFRKMTTN  721
                LCEGFSRIIASL*EN+SHNFVSKWES ADWSLNTSLLV+LETTDE*TSS LRALATEAKISPPNRVLSPATIAVFGTLGR*TS  FHPKVRSSLSDGMCSMFVPANL  FNDLKP  IKKP EKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILA TNVFFTSIGTLRALLNNFPFRKMT +
Subject    803  LCEGFSRIIASL*ENISHNFVSKWESNADWSLNTSLLVILETTDE*TSS*LRALATEAKISPPNRVLSPATIAVFGTLGR*TSPPFHPKVRSSLSDGMCSMFVPANLMTFNDLKPRCIKKPIEKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILAQTNVFFTSIGTLRALLNNFPFRKMTAS  1522

Range 5: 806 to 1519 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
482.6 bits(1047) 0.0 210/238(88%) 0/238(0%) Minus/Plus
Query        5  RCHLAEREIV*QGP*CSY*SKEHVRMG*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREYGPRV*CCLAAH*VVEYARKGVCMHHQRVVLV**RKAEGRNL*TPLLLIFLFGRFLDAHGL*IVESRQVCGHEHTTHTIAQ*RAHLWVEERRCLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*PRGGLFICRFEHHQ*AGIEGPIGLAFPFGHEIV*HVFSKGRNDSRKTLT  718
                RCHLAEREIV*QGP*CSY* KEHVR+G*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREY PRV*CCLAAH*VVEYARKGVCMHHQRVVLV*  +AEGRNL T LLLIFLF RFLDA  L*IV+   VCGHEHTTH I Q*RA+LWVE RR LSPQCPKNRYRRWR*DTVGRGDLGLRRQCP* RGGLFI RFE+HQ* GI+GPIG+AFPFGHEIV +VFSKGRNDSRKTLT
Subject    806  RCHLAEREIV*QGP*CSY*CKEHVRLG*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLFDRFLDAPWL*IVKGH*VCGHEHTTHAITQ*RAYLWVEGRRRLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*SRGGLFIGRFEYHQ*TGIKGPIGIAFPFGHEIVRYVFSKGRNDSRKTLT  1519

Range 6: 1006 to 1518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.1 bits(749) 0.0 146/171(85%) 0/171(0%) Plus/Minus
Query        6  VRVFRESLRPFEKTCHTISCPNGKARPIGPSIPAYW*CSKRQMNRPPLG*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDKHLRSSTQRCALH*AMVCVVCSCPQT*RLSTI*SPCASRNLPKRKMRSNGVYKFLPSAFRY*TNTTLWWCIQTPFRAYSTTQCAARQHHTLG  518
                VRVFRESLRPFEKT  TISCPNGKA PIGP IP YW* SKR MNRPPL *GHWRRRPRSPLPTVSYRQRR*RFLGHWGD+ LR STQR ALH* M CVVCSCPQT*   TI*S  ASRNL KRKMRSN V KFLPSA   *TNTTLWWCIQTPFRAYSTTQCAARQHHTLG
Subject   1006  VRVFRESLRPFEKTYRTISCPNGKAMPIGPLIPVYW*YSKRPMNRPPLD*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDRRLRPSTQRYALH*VMACVVCSCPQT**PLTI*SQGASRNLSKRKMRSNDVCKFLPSASHC*TNTTLWWCIQTPFRAYSTTQCAARQHHTLG  1518

Range 7: 805 to 966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 52/54(96%) 0/54(0%) Plus/Minus
Query      558  AQ*GRI*QLYL*RKNTLSYERLHPRF*PIRTCSLLQ*EH*GPC*TISLSAR*QR  719
                AQ*GRI*QLYL*RKNTLSYERLHPRF*P RTCSL Q*EH*GPC*TISLSAR*QR
Subject    805  AQ*GRI*QLYL*RKNTLSYERLHPRF*PKRTCSLHQ*EH*GPC*TISLSAR*QR  966

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 4

Range 1: 1697 to 2242 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
194.9 bits(419) 0.0 87/182(48%) 0/182(0%) Minus/Plus
Query        1  TIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR  546
                TI +F+    P  +V LP +  +  R R  V  + GWCW+N  RLR  +  R    S ++   +M MG R ++ VR A     H+ S  E  T  +    V L       ++AGDR R G E+LASVANALNQEEVYSSVVS I NRL L+DQS+LL+HLD +LC+MF+QRDA+IREKP+HR
Subject   1697  TITEFLFGVGPDDEVQLPDMAFYCPRLRRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYTAKEVMDMGLRKVRMVRTAKVGFYHVVSKWELLTLRYPEKIVDLQTCRPVNVLAGDRVRAGNEVLASVANALNQEEVYSSVVSGIANRLALKDQSSLLAHLDNRLCEMFAQRDALIREKPNHR  2242

Range 2: 1529 to 1651 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 18/41(44%) 0/41(0%) Minus/Plus
Query      592  VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYV  714
                + LR    + R+    ++VKNT+ W K+WDE + RRGYFY+
Subject   1529  IFLRDAVPYCRSTRSFVDVKNTYRWTKVWDEQTGRRGYFYM  1651

Range 3: 2032 to 2232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 37/67(55%) 0/67(0%) Plus/Minus
Query       11  GFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPA  211
                GFSRI AS * N+SHN +S+  +  D S +   L + ETTDE*TSSWLRA AT+A+ S P    SPA
Subject   2032  GFSRISASR*ANISHNLLSRCANNDD*SFSAKRLAIPETTDE*TSSWLRAFATDARTSLPALTRSPA  2232

Range 4: 2033 to 2242 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 27/70(39%) 0/70(0%) Plus/Minus
Query        1  PV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIAS  210
                PV     N  + L +H+T   ++M +Q  L+ Q Q I D R+DR ++LLLVK +  G Q+L + P  I+S
Subject   2033  PVVRLLTNKRIALSEHLT*SVIKMCQQR*LILQCQTISDPRDDRRVNLLLVKSVCYGRQNLIASPDAISS  2242

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 2

Range 1: 1971 to 2255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 30/95(32%) 0/95(0%) Minus/Plus
Query      430  VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCW  714
                ++L+ GK FN  +N P+EVK T  W +++D  + +  Y Y ++  +    +     ++ DFI  T  G  V LPR   +    +  V T  GWCW
Subject   1971  IVLKNGKFFNTFINQPLEVKTTNAWLRVYDIDAEKPIYVYAREGRIFKLCVEGRAPSVIDFIRATQKGHYVELPRTSFFCPATKKMVSTEVGWCW  2255

Range 2: 2463 to 2633 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 18/57(32%) 0/57(0%) Minus/Plus
Query        7  LASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPS  177
                +AS++ AL  E+V+  +VSS+ N++ L++ SA++  LD  +  +   +  ++  KPS
Subject   2463  MASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPS  2633

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 1922 to 2089 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 25/56(45%) 0/56(0%) Minus/Plus
Query       13  ILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREK  180
                ++ASV+NALNQE+++  +VS+I NRLVL++ S L++HLD K+ ++F  ++  + +K
Subject   1922  LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKK  2089

Nucleotide Sequence (755 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
76
152
228
304
380
456
532
608
684
755

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
556.4 3085.6 37% 1.084e-157 92% NC_004667
278.3 576.3 17% 5.773e-74 34% NC_022072
112.4 275.1 24% 2.427e-29 41% NC_016509
105.5 207.6 15% 5.791e-22 31% NC_029783
79.0 79.0 11% 5.794e-14 41% NC_011702

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 13677 to 14420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
556.4 bits(1208) 0.0 243/248(98%) 0/248(0%) Plus/Minus
Query        5  VSSKPSHNYLGERIREDQEELHSLT*KKDSLVCLSATATHESLHVYKPP*IINKR*IFLNFSPIYRHRSXXXXXXXXEDVM*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCSINLHCHLY*YFP  748
                VS+KPSHNYLGERIREDQEELH LT*KKDSLVCLSATATHESLHVYK P*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDV+*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQC INLHCHLY*YFP
Subject  13677  VSNKPSHNYLGERIREDQEELHPLT*KKDSLVCLSATATHESLHVYKLP*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCGINLHCHLY*YFP  14420

Range 2: 13677 to 14420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
549.5 bits(1193) 0.0 244/248(98%) 0/248(0%) Minus/Plus
Query        5  GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWGLIHM*TFMSRGC*KTNKTIFLSSQRMKLLLVLPDTFAQIVM*GLT*Y  748
                GKVSVEVAMKINAALMELCKKVMGADDAATKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSW LIHM*TFMSRGC*KTNKTIFLSSQRMKLLL+LPDTFAQIVM*GL *Y
Subject  13677  GKVSVEVAMKINAALMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWELIHM*TFMSRGC*KTNKTIFLSSQRMKLLLILPDTFAQIVM*GLI*Y  14420

Range 3: 13865 to 14422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
440.9 bits(956) 0.0 182/186(98%) 0/186(0%) Plus/Minus
Query        3  LYQVSPHITIWANVSGRTRRSFIR*LERKIVLFVFQQPRLMKVYMCISPHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  560
                LYQ+SPHITIWANVSGR RRSFIR*LERKIVLFVFQQPRLMKVYMCIS HELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHA+IASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP
Subject  13865  LYQISPHITIWANVSGRIRRSFIR*LERKIVLFVFQQPRLMKVYMCISSHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHANIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  14422

Range 4: 13676 to 13825 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 49/50(98%) 0/50(0%) Plus/Minus
Query      600  EDDVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFP  749
                EDDVKNVQAICITYKKN VLVAASSAPITFLHSSINAALIFIATSTDTFP
Subject  13676  EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSINAALIFIATSTDTFP  13825

Range 5: 13670 to 14422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
525.7 bits(1141) 0.0 243/251(97%) 0/251(0%) Minus/Plus
Query        3  KLRESISRGGNED*CCIDGAV*EGYGRR*RSN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHXXXXXXXXXXXXXXRNTSMEFS*TAGV*KQDGNGR*HLT*RLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSANEAPPGPPGYVRPDSYVRAYLIQ  755
                + RESISRGGNED*C IDGAV*EGYGRR*RSN*D+ILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRN SMEFS*TAGV*KQDGNGR*HLT RLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSA+EAPP PPGYVRPDSYVRAYLIQ
Subject  13670  RARESISRGGNED*CRIDGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRNISMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSADEAPPDPPGYVRPDSYVRAYLIQ  14422

Range 6: 13798 to 14421 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
461.1 bits(1000) 0.0 204/208(98%) 0/208(0%) Plus/Minus
Query        4  CIK*ALT*LSGRTYPGGPGGASFADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRYVRCYRPLPSCF*TPAV*LNSMLVLRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ  627
                CIK*ALT*LSGRTYPGG GGAS ADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRR VRCYRPLPSCF*TPAV*LNSML+LRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ
Subject  13798  CIK*ALT*LSGRTYPGGSGGASSADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSMLILRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ  14421

Range 7: 13711 to 13746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 11/12(92%) 0/12(0%) Plus/Minus
Query      679  P*PSYTAPSMQH  714
                P*PSYTAPSM+H
Subject  13711  P*PSYTAPSMRH  13746

Range 8: 13846 to 14349 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
313.1 bits(677) 0.0 166/168(99%) 0/168(0%) Minus/Plus
Query       76  TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSXXXXXXXXXXXTICSTTTQY*HGI*LDSRRLETRR*RPITPYITSSNYCKRSSYDRCL*IGEKFRNXXXXXXXXXXXYTCRLS*VAVAERQTRLSFFQV  579
                TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPY TSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHG LYTCRLS*VAVAERQTRLSFFQV
Subject  13846  TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHGSLYTCRLS*VAVAERQTRLSFFQV  14349

Range 9: 13678 to 13794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 38/39(97%) 0/39(0%) Minus/Plus
Query      631  GKYQ*RWQ*RLMLH*WSCVRRLWAPMTQQLRQNSSCT*C  747
                GKYQ*RWQ*RLM H*WSCVRRLWAPMTQQLRQNSSCT*C
Subject  13678  GKYQ*RWQ*RLMPH*WSCVRRLWAPMTQQLRQNSSCT*C  13794

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 14595 to 15122 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.3 bits(601) 0.0 118/176(67%) 0/176(0%) Minus/Plus
Query      221  GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQK  748
                G +S EVA K+NA L  LC+K++GA+D  T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY   V++ IK A  STGYENPVRQYLA+FTPT +TA LNGKL  NEKVMAQHGVPPKFF YT+DCVRP+Y+LFNN AILAWNLAR++AF++KT ++DNTLHNV+Q+L K
Subject  14595  GMLSQEVANKVNAELKVLCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDCVRPSYNLFNNSAILAWNLARREAFKSKTASSDNTLHNVYQMLNK  15122

Range 2: 14783 to 15115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 64/111(58%) 0/111(0%) Plus/Minus
Query      228  NSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP  560
                N W TLC VLS   VL LNA  LAKFHA IA LLN+   G TQS V  KN GGTPC AITFS   SLP  +AV  VGV +ARY  TGFS PV+  AC +   T +  IF P
Subject  14783  NIWYTLCSVLSDDAVLDLNASLLAKFHARIALLLNKL*EGLTQSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP  15115

Range 3: 14594 to 14737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 21/48(44%) 0/48(0%) Plus/Minus
Query      606  DVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFP  749
                DV NV AIC   +  FV V  S AP  F HS+ ++A    ATS  + P
Subject  14594  DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFSSAFTLFATSWLSMP  14737

Range 4: 14646 to 15044 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 49/133(37%) 0/133(0%) Plus/Minus
Query      299  *IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQ  697
                *IPC    V+E +VRR  A+  V KE RWYS+L H+LLV  * T++  R +   + R IL   V +  R +S+F  + +   + L +I    VV+LF   R R  ER  +L +   E   S  ++ +  LLTQ
Subject  14646  *IPCQNSTVIE*VVRRPYAIQCVGKELRWYSVLSHHLLVRS*LTVKHSRHDRRGKPRQILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ  15044

Range 5: 16336 to 16548 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 24/71(34%) 0/71(0%) Minus/Plus
Query      278  NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFR  490
                N VR Y+ Y+  T ++  L+GKL       A+HGVP +F P+  D        +  D + A  LA   A R
Subject  16336  NKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIR  16548

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 4

Range 1: 13700 to 14005 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 47/102(46%) 0/102(0%) Minus/Plus
Query      230  VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL  535
                V   + + A  + +ENP+RQY   F+ T +   LNGKL  NEKV  QHGVP +F PYT D  RP+Y  F+NDAI AW LA + AF  K+    + L N  +L
Subject  13700  VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESAFGRKSNVTSSVLRNTSEL  14005

Range 2: 13481 to 13603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 17/41(41%) 0/41(0%) Minus/Plus
Query      626  GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQI  748
                G V+  VA  I+  L  LC +VMG  D  + T FFL ++Q+
Subject  13481  GLVTPAVATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQL  13603

Range 3: 13741 to 13953 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 32/71(45%) 0/71(0%) Plus/Minus
Query      282  NACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS  494
                NA   A  HA +ASLLN    G  +S VYG+N  GTPCC  TFSF  + PF +    V      Y   GFS
Subject  13741  NADSAANCHALMASLLN*E*DGLQKSKVYGRNLLGTPCCIATFSFGLNFPFNIKCTAVAENNLAY*RIGFS  13953

Range 4: 15231 to 15398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 25/56(45%) 0/56(0%) Minus/Plus
Query      356  IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID  523
                I+ +   + YENPVRQY+ +F+ T I+   +G +V N  VMA+HGV  +F PY  D
Subject  15231  IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD  15398

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 13986 to 14291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 44/102(43%) 0/102(0%) Minus/Plus
Query      230  VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL  535
                +Y  I+ A +   YENPVRQY   F+P+ I+A+  GK+  N+KV+AQHGV  +F  Y +D +RP+Y  +N   I AW LA+++AF     +   TLHN  +L
Subject  13986  LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLAQREAFSAVASSNATTLHNTSEL  14291

Range 2: 14024 to 14278 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 32/85(38%) 0/85(0%) Plus/Minus
Query      243  LCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*  497
                LCKV++      L A   A   A I   L  + +G + S  Y      TPCCA TF F   LP  +A++ +G  + +YC TGFS*
Subject  14024  LCKVVALELATALKASR*ANCQARICLTL*YA*LGLSTSKQYEAKRFTTPCCAKTF*FGLILPTELALIILGENFRQYCRTGFS*  14278

Range 3: 15476 to 15700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 23/75(31%) 0/75(0%) Minus/Plus
Query      272  YENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNK  496
                Y N +R+Y+ +++ T I+    G +  N    A HGV   + PY  D V         D  +A  LA+  A +NK
Subject  15476  YSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNK  15700

Grapevine leafroll-associated virus 10, complete genome, genomic RNA

Sequence ID: Length: 13696 Number of Matches: 1

Range 1: 12579 to 12818 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 33/80(41%) 0/80(0%) Minus/Plus
Query      284  IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQA  523
                +  + A+ GYEN +RQ+   FT   +    +GKL +N K+ A HGVPP ++PY+ DC+     LF  DA LA  LA+  A
Subject  12579  LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDARLFGYDASLAAELAKMVA  12818

Nucleotide Sequence (1342 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
135
270
405
540
675
810
945
1080
1215
1342

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
872.6 4639.0 35% 0 63% NC_004667
72.5 120.8 7% 1.736e-20 41% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 16

Range 1: 3303 to 4517 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
872.6 bits(1898) 0.0 379/405(94%) 0/405(0%) Plus/Minus
Query      117  LSRYFGLGDFWNSCWWYTLRTGLYWFPVAFVGCGLCCVVIYSSPPFLNRRITDVAFWKQPLVVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPHAAHICDTIIA*DTRSGSIAIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHSRRKPSSHD*RSTGYCARXXXXXXXXXL*T*RA*SFVTTARVPSSVSRNSAPILPRNWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFF  1331
                LS Y GLGD WN   W T +TGLYW PVAFV  GLCCV I SS PFL RR+TD AFW+QP  VHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPH AHICD IIA*DTRSGSI IVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGH RRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILP NWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFF
Subject   3303  LSMYLGLGDLWNISLWRTHKTGLYWLPVAFVDRGLCCVTICSSSPFLCRRLTDDAFWEQPFAVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPHVAHICDNIIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFF  4517

Range 2: 3604 to 4221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
484.9 bits(1052) 0.0 203/206(99%) 0/206(0%) Minus/Plus
Query      413  NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTIAMDPLLVSQAMMVSQMCAAWGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR  1030
                NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTI MDPLLVSQAMM+SQMCA WGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR
Subject   3604  NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMMLSQMCATWGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR  4221

Range 3: 3304 to 3567 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
206.3 bits(444) 0.0 87/88(99%) 0/88(0%) Minus/Plus
Query     1067  KNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQLRGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF  1330
                KNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQL GSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF
Subject   3304  KNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF  3567

Range 4: 4273 to 4503 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 59/77(77%) 0/77(0%) Minus/Plus
Query      131  STMSFTNSLVGKRLVRLRWTTRGCFQKATSVMRRFKKGGEL*MTTQHKPQPTKATGNQYSPVLRVYHQQLFQKSPSP  361
                STMSFTNSLVGKRLVRLRWT +GC QKA+SV RR KKG EL M TQHKP+ TKATG+QYSPVL V H+ +FQ+SPSP
Subject   4273  STMSFTNSLVGKRLVRLRWTAKGCSQKASSVRRRHKKGEELQMVTQHKPRSTKATGSQYSPVL*VRHRLIFQRSPSP  4503

Range 5: 3526 to 4047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
402.9 bits(873) 0.0 173/174(99%) 0/174(0%) Plus/Minus
Query      587  KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSQPTKTLFARLKIHRILC  1108
                KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RS PTKTLFARLKIHRILC
Subject   3526  KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC  4047

Range 6: 4090 to 4386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
233.8 bits(504) 0.0 93/99(94%) 0/99(0%) Plus/Minus
Query      248  PLLESAHHRCRFLEATPCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP  544
                P L SA HR RFL AT CRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP
Subject   4090  PFLVSAPHRRRFLGATLCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP  4386

Range 7: 3304 to 3483 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 57/60(95%) 0/60(0%) Plus/Minus
Query     1151  TSLEFRNYCPRTF*R*PQFRAYTSTQLGSHPKTPRISR*APYSAIRKW*SHLRKLHPKIL  1330
                TSLEFRNYCPRTF*R*PQFRAYTS QLG HPKTPRISR*APYSAIRKW*SHLRKLH KIL
Subject   3304  TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRKW*SHLRKLHSKIL  3483

Range 8: 4367 to 4504 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 29/46(63%) 0/46(0%) Plus/Minus
Query      130  SDLATFGTAAGGTLSGLDCTGSLWPSSAAACAVLSSTALPPS*IGA  267
                SD  TFG +A G L+ LDCTGSL PS  A CAVL S ALP S +GA
Subject   4367  SDWVTFGISACGELTRLDCTGSLSPSLTAVCAVLPSAALPLSCVGA  4504

Range 9: 3305 to 4303 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
746.1 bits(1622) 0.0 328/333(98%) 0/333(0%) Minus/Plus
Query      331  RILG*SFLK*LHHFRIAE*GAYRDIRGVFGCDPNCVEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGCDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*WCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFXXXXXXXXXXCLSPTV*W  1329
                RIL *SFLK*LHHFRIAE*GAYRDIRGVFGC PNC+EV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVG DRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL* CHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W
Subject   3305  RILE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*CCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W  4303

Range 10: 4340 to 4390 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 11/17(65%) 0/17(0%) Minus/Plus
Query      244  VASRKRHR*CADSRRGE  294
                VA RKR R* AD+R+G+
Subject   4340  VAPRKRRR*GADTRKGK  4390

Range 11: 3573 to 4022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
335.6 bits(726) 0.0 150/150(100%) 0/150(0%) Minus/Plus
Query      612  AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMXXXXXXXXXGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP  1061
                AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP
Subject   3573  AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP  4022

Range 12: 4077 to 4439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
217.8 bits(469) 0.0 108/121(89%) 0/121(0%) Minus/Plus
Query      195  NVRGVGISTNGEVTGEEETHSPRSVQYTYXXXXXXXXXXXXERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDDKGLLPESDIGDAPIQEGGRAVDDNTAQAAADEGHR  557
                NVR VGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVD KGLLPES +G+AP QE GRA D NTAQ A +EG R
Subject   4077  NVRDVGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDGKGLLPESVVGEAPTQERGRAADGNTAQTAVNEGDR  4439

Range 13: 3303 to 3458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 49/52(94%) 0/52(0%) Minus/Plus
Query     1176  EEFWGEVSLNDFTTFVLRNKVLIGIFVASLGATPIAWKYRRGIAANARRYAG  1331
                +EFW EVSLNDFTTFVLRNKVLIGIFVASLGA PIAWKYRRGIAANARRYAG
Subject   3303  KEFWSEVSLNDFTTFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG  3458

Range 14: 3299 to 3940 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
456.1 bits(989) 0.0 210/214(98%) 0/214(0%) Plus/Minus
Query      694  YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVSXXXXXXXXXXXXIPRLYFHAIGVAPKDATNIPISTLFRNTKVVKSFKETSPQNSSI  1335
                YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIG APKDATNIPISTLFRNTKVVKSFKETS QNS +
Subject   3299  YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPISTLFRNTKVVKSFKETSLQNSFV  3940

Range 15: 3983 to 4159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.2 bits(221) 0.0 57/59(97%) 0/59(0%) Plus/Minus
Query      475  VYCTLRGEWXXXXXXXXXXXXIPTPRTFVTPS*LETLEVDPSLSSPGTASC*VPDGPAP  651
                VYCTLRGEWVSSSPVTSPLVLIPT RTFVT S*LETLEVDPSLSSPGTASC*VPDGPAP
Subject   3983  VYCTLRGEWVSSSPVTSPLVLIPTSRTFVTTS*LETLEVDPSLSSPGTASC*VPDGPAP  4159

Range 16: 4202 to 4315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 38/38(100%) 0/38(0%) Plus/Minus
Query      319  RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL  432
                RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL
Subject   4202  RAVSPLDCW*KTSSTPFFTLSTKAIASAVPEPDGSPCL  4315

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 5225 to 5398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 24/58(41%) 0/58(0%) Minus/Plus
Query      666  VPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD  839
                +P +VW+G +   +L+ + + +SL++R L  D +PQ+  +  +EGRNVYDE L+YY+D
Subject   5225  MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD  5398

Range 2: 5018 to 5137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 21/40(52%) 0/40(0%) Minus/Plus
Query      927  RATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLM  1046
                R TV  RQVP ALL  + SY + G     +WAH LPR+LM
Subject   5018  RTTVGTRQVPSALLYSTLSYWVGGVCAGDLWAHILPRNLM  5137

Nucleotide Sequence (769 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
77
154
231
308
385
462
539
616
693
769

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
556.0 2966.0 40% 1.519e-157 97% NC_004667
366.3 674.3 24% 1.944e-100 33% NC_022072
238.0 329.9 30% 8.135e-62 32% NC_029783
161.0 161.0 28% 1.212e-38 38% NC_005065
108.7 477.1 19% 2.27e-59 36% NC_016509

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 6156 to 6857 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
556.0 bits(1207) 0.0 229/234(98%) 0/234(0%) Minus/Minus
Query       67  ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNEYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFILTANDLFRVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHPP  768
                ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTN+YMRLFSE*GVIG LRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWF+LTANDLFRVTLFRSPYGH*GQQVANI*RTPV FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIH P
Subject   6156  ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSP  6857

Range 2: 6159 to 6857 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
550.0 bits(1194) 0.0 232/233(100%) 0/233(0%) Plus/Plus
Query       70  GMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC  768
                GMYKRVLVDEV+MMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC
Subject   6159  GMYKRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC  6857

Range 3: 6494 to 6856 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
284.7 bits(615) 0.0 121/121(100%) 0/121(0%) Minus/Minus
Query      405  QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  767
                QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI
Subject   6494  QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  6856

Range 4: 6158 to 6442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.2 bits(472) 0.0 94/95(99%) 0/95(0%) Minus/Minus
Query       69  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIP  353
                FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIM TSSTKTLLYIP
Subject   6158  FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSSTKTLLYIP  6442

Range 5: 6151 to 6495 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
261.3 bits(564) 0.0 111/115(97%) 0/115(0%) Plus/Plus
Query       62  SLGGCIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNHTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRINQ**DRCPKGQ  406
                S G CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLN TGVR*MFATCCPQ*P*GERKSVTLKRSLAVR NQ**DRCPKGQ
Subject   6151  SSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQ  6495

Range 6: 6589 to 6858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
224.7 bits(484) 0.0 88/90(98%) 0/90(0%) Plus/Plus
Query      500  EKEKKHQ**QCMKHREKHSVMWYCLGRRRPMTPYSLNNRIYSLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVA  769
                EKEKKHQ**QCMKHREKHSVMWYCLGRR+PMTPYSLNNRIY LVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVA
Subject   6589  EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVA  6858

Range 7: 6157 to 6534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
267.7 bits(578) 0.0 122/126(97%) 0/126(0%) Minus/Minus
Query       68  RQRLFQLRHQWFQLAFWTAILLLVYPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCMI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTXXXXXXXXXXXLDASCTPHPPKPFYTSP  445
                RQRLFQLRHQWFQLAFWTAILLLV PYR*RPFQGNTFPFPLRSLRTTSSKHLTDTC I*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASC PHPPKPFYT P
Subject   6157  RQRLFQLRHQWFQLAFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASCAPHPPKPFYTFP  6534

Range 8: 6619 to 6858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
182.5 bits(392) 0.0 78/80(98%) 0/80(0%) Minus/Minus
Query      530  SNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQRVYAVV**IGSHRPSSS*TIPHH*MFFPVLHA  769
                SNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQ+VYAVV**IGSHR SSS*TIPHH*MFFPVLHA
Subject   6619  SNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHRLSSS*TIPHH*MFFPVLHA  6858

Range 9: 6257 to 6856 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
419.9 bits(910) 0.0 196/200(98%) 0/200(0%) Plus/Plus
Query      168  FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IIQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G*TSSKIAVQKANWNH**RS*NKR*RVLVHDPXXXXXXXXXXXXKRKRNTSDDSA*STGKNIQ*CGIV*DEEGR*LPIH*TTAYTRWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWL  767
                FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*I+QVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G TSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEE R*LPIH*TTAYT WFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWL
Subject   6257  FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWL  6856

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 7226 to 7921 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
366.3 bits(793) 0.0 150/232(65%) 0/232(0%) Plus/Plus
Query       73  MYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC  768
                MY R+LVDEVYMMH+GLLQ G FA+GA EG+F+GD++QIPFINREK+FR   +   P+K  + YT ++YRCPLDVC++LS++     EKCY   VVSG   PVVRS  KRPIG+  DVA+I ADVYLC TQ EK +MKR L   G+  PVMTVHEAQGKTF  VVLFRTK+ADDS+F  QPH LV LSRHT SLVYAALSSKL D+VG+ I   +  +VS+ALLHTFAP+GC
Subject   7226  MYDRILVDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHTSSLVYAALSSKLSDRVGSMIDSTASSTVSNALLHTFAPSGC  7921

Range 2: 7558 to 7920 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 68/121(56%) 0/121(0%) Minus/Minus
Query      405  QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI  767
                QP GANV  +A  T       I  PTLS +FELRAA*T E VCL++ T   G  +N  SSA  VLN TT   VFPCAS TVITG + P  FN  FIS FS  V HKYTSA I ATS+ +PI
Subject   7558  QPDGANVCRRALLTVLDAVLSIIDPTLSLSFELRAA*TREEVCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI  7920

Range 3: 7225 to 7497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 46/91(51%) 0/91(0%) Minus/Minus
Query       72  *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYI  344
                *HFS   ++  DN   TSNG  Y   VY    F G +      N FS FM GI*  SP K PS AP AK P+CSKP CIM TSST+   YI
Subject   7225  *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKPSCIM*TSSTRIRSYI  7497

Range 4: 7511 to 7921 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.7 bits(137) 0.0 45/137(33%) 0/137(0%) Minus/Minus
Query      358  ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNEYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFILTAN  768
                AT R E V++ V Y  R    N   + + QL   S IN+   +  +++  +RL  E  V+  L  KQ +  E FSL  M CHH    S ++  PLH+ LL+L   QVH+S+    +   S+ P  + S+Y  + + N
Subject   7511  ATRRCECVQKGVTYCARCGAVNHRPNPVTQLRT*SSINERRSMP*KSH*SVRLRVEHTVVSALSSKQNNFLESFSLRLMDCHHRFNSSEAI*LPLHLSLLRLCLTQVHISLDLRNISHTSDRPLLK*SHYRRLQSGN  7921

Range 5: 7226 to 7417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 22/64(34%) 0/64(0%) Minus/Minus
Query       73  VYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIH  264
                V +  LL  + + +  ++LL VYE  L+ +S + +   +  +   L * LMHHV LI++N  IH
Subject   7226  VLDQVLLRFEETMLAAEYLLTVYERNLMNISVENSLFGS*SKTPKLQ*TLMHHVDLINKNTVIH  7417

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 6990 to 7646 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.0 bits(513) 0.0 102/219(47%) 0/219(0%) Plus/Plus
Query       88  LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALL  744
                L+DEVY++H+G L   + A    E + +GD+NQIPF NREK+F M  +   P +  + YT+ SYRCP DVCYLLS M     + CYP  V + +D+  +RS+   PI    +    + DV+L  TQ EK+++ R      +  PV T+HEAQGKTF  V L R KKADDS+    PH LVG+SRHTRS VY   +S+L DKVG+  SD S ++VSD +L
Subject   6990  LIDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHTRSFVYMTYNSRLSDKVGSLCSDVSDKNVSDVVL  7646

Range 2: 7343 to 7600 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 38/86(44%) 0/86(0%) Minus/Minus
Query      441  VPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS  698
                +PTLS   EL    T +RVCL+ PT   G     ESSAFF     T  NVFP AS  V TG         L  S FS  V  K TS
Subject   7343  LPTLSERRELYVIYTKDRVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS  7600

Range 3: 7101 to 7250 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 16/50(32%) 0/50(0%) Minus/Minus
Query      199  RVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPV  348
                RVT F     H GQ++A++  T V +  V +  L+      +H KHL  +
Subject   7101  RVTRFPIQIHHLGQEIAHVRWTSVGYVGVLDLRLIGFDRRVVHDKHLFAI  7250

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 4764 to 5399 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 80/212(38%) 0/212(0%) Plus/Plus
Query       70  GMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYI  705
                G    V +DE +++H G L++     GA E   +GD  QIPFINR + F     V    K  V+  + SYRCP DVC +LS    +    CYP  V  G      RS+S + I +  DV   N DV++  TQ EK  +    + +  +    TVHE QGKT   V + R K A+DS+FT   H +V LSRHT    Y ++S +L D +G  I
Subject   4764  GKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHTVGARYYSISKRLFDGIGREI  5399

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 7

Range 1: 7076 to 7357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 46/94(49%) 0/94(0%) Plus/Plus
Query      463  QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALL  744
                ++++   K  +    K   V+T HEAQGKT+ DVVL R KKADD +F+++PHI+V LSRHTRS+ YA LSSK+ D +   I       VSD LL
Subject   7076  EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHTRSMKYAVLSSKMSDTISKLIDGTYAGKVSDVLL  7357

Range 2: 6845 to 7087 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 41/81(51%) 0/81(0%) Plus/Plus
Query      247  KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR  489
                +E + YT  SYRCP DVCY+LSSMT     K YP  V    D   +RS  K PI T +D     ADVYL MTQ EK++M+R
Subject   6845  EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR  7087

Range 3: 6686 to 6814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.3 bits(145) 0.0 27/43(63%) 0/43(0%) Plus/Plus
Query       88  LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF  216
                L+DEVYM+H+G+ QL V A G  E + +GD NQIPFINREK F
Subject   6686  LIDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF  6814

Range 4: 6691 to 6924 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 35/78(45%) 0/78(0%) Minus/Minus
Query       93  LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSS  326
                ++VI+DN * TS GHLY++ VY+  S   +  +  + N FSL +NGI*F+SP    S  P+A T + + P C +YTSS
Subject   6691  ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSS  6924

Range 5: 7120 to 7302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 32/61(52%) 0/61(0%) Minus/Minus
Query      507  LSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSF  689
                +S   EL  A    RVCLDK T+I G      SSAFF L NTTS  V PCASC V T   F
Subject   7120  VSDILELSTAYFMLRVCLDKATTI*GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLF  7302

Range 6: 6692 to 6814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 17/41(41%) 0/41(0%) Minus/Minus
Query       94  KHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLI  216
                K L PV +WYLI +S ++ F  +     *L  +LM H+H I
Subject   6692  KRLFPVDKWYLILISVRDNFFHSHRYHC*LKHSLMQHIHFI  6814

Range 7: 7133 to 7360 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 27/76(36%) 0/76(0%) Minus/Minus
Query      520  VKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNEYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHH  747
                ++Q+V +    R  N   D I  L AQ  +   A +  Q+N  MRL  E  +I LL+  QY+IT   +L FM   H
Subject   7133  LQQNVTHFSSVRTINQLRDSIRHLRAQHRVFHAASMP*QSNYNMRLPREDRIICLLQSYQYNITIRLALRFMRR*H  7360

Nucleotide Sequence (2539 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
254
508
762
1016
1270
1524
1778
2032
2286
2539

Descriptions

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 32

Range 1: 10017 to 11966 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1439.8 bits(3136) 0.0 642/650(99%) 0/650(0%) Minus/Plus
Query       21  PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDXXXXXXXXXXXXGPDTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWAGRALLFESW**VHRCLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYH  1970
                PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRW GVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV  QPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTR+NL NKDKGFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYW GRALLFESW**VHR LGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYH
Subject  10017  PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWAGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRRNLGNKDKGFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHRRLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYH  11966

Range 2: 10537 to 11880 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
990.3 bits(2155) 0.0 438/448(98%) 0/448(0%) Plus/Minus
Query      107  SRVFPDNGVLTTTIRKGAPSRPNISLIHYREYLVSSLVRV*YPRYINIFIHSKSYLYLRRILKNFLLSLNPRTPYLCYSGFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIHFLLPHH*R*QTPSRPWRD*TAPRRSLLGLPYVSIRPGTSVHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAENPLPRPLAYSLKCPPVSVRYYLPKYRSXXXXXXXXNI*NRYCRTRP*ISAAN*PHHS*P*LEHLTPQS*QQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*R  1450
                SRVFPD+GVLTTTIRKGAPSR NISLIHYREYLVSSLVRV*YPRYINIFIHSKS LYLRRILKNFLLSLNPRTPYLCY GFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIH LLPHH*R*QTP RPWRD*TAPRRSLLGLPYVSIRPGTS HLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAE+PLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTR *ISAAN*PHHS*P*LEHLTPQS*+Q*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*R
Subject  10537  SRVFPDDGVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKSCLYLRRILKNFLLSLNPRTPYLCYPGFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P*LEHLTPQS*RQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*R  11880

Range 3: 9774 to 11033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
932.1 bits(2028) 0.0 411/420(98%) 0/420(0%) Plus/Minus
Query      954  RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVXXXXXXXXXXXXXXIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRKNQQQNYHKDKIDY*QQYCLFKIVHKQIRLLQYKITILPSLSTKIIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV  2213
                RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDV FDVIPRHT PPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKA+C E GSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+RKNQQQNYH+DKIDY*QQYCLFKI+HKQIRLLQYKITILPSLSTK+IRVAPSPISLLRRTRSIPISRKNLFMSPLNLV
Subject   9774  RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVAFDVIPRHTCPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV  11033

Range 4: 11073 to 11936 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
668.7 bits(1453) 0.0 280/288(97%) 0/288(0%) Plus/Minus
Query       51  YAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRICIYGGF*KIFFYP*IREPLIFVTQVFPRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFIFYFLTINDNRHRPVRGEIKLRHVGLYWVSPTFRYAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRYLRQISHITPDL  914
                YAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNR+CIYGGF*KIFFYP*IREPLIFVTQV PRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFI YFLTINDNRHR VRGEIKLRHVGLYWVSPTFRYAPERR I*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLK HYLVR*RIR*SVHQSQSAITCQ+IAVNLSPTSHRTSKIGTVEHD RYLRQISHITPDL
Subject  11073  YAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRVCIYGGF*KIFFYP*IREPLIFVTQVSPRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDL  11936

Range 5: 11077 to 11976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
665.0 bits(1445) 0.0 289/300(96%) 0/300(0%) Minus/Plus
Query       11  SGVMWLICRRYLRSCSTVPILDVRWLVGLRFTAIFWQVIAD*DWWTLXXXXXXXR*WIFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MNRRSGAYRNVGETQ*RPTWRSLISPRTGRCLLSLMVRK*KMNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRGKT*VTKIRGSRI*G*KKIF*NPP*IQIRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTYPN  910
                SGVMWLICRRYL+SCSTVPILDVRWLVGLRFTAI WQVIAD*DWWTL*RIR*RTR*W+FSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*M+RRSGAYRNVGETQ*RPTWRSLISPRT RCLLSLMVRK*+MNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRG+T VTKIRGSRI*G*KKIF*NPP*IQ RF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTT  N
Subject  11077  SGVMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRGETWVTKIRGSRI*G*KKIF*NPP*IQTRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSN  11976

Range 6: 10001 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
629.3 bits(1367) 0.0 302/303(100%) 0/303(0%) Plus/Minus
Query     1078  GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVSGXXXXXXXXXXXXLSIFTVYVGFNFST*RSTLSLVTPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR  1986
                GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTP HLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR
Subject  10001  GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTPAHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR  10909

Range 7: 9674 to 10366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
507.8 bits(1102) 0.0 222/231(96%) 0/231(0%) Minus/Plus
Query     1621  *VYFLSLVLSYMTLRQNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*SSC*AKVVS*FYIEVGVFVYGRF*TGNTVASSRFCLCDNSVAGSYVCRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHLQYNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED  2313
                *VY LSLVLSYMTLR NYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE* SC*AKVVS*FYIEVGVFVYG F*TGNTVASSRFCL DNS AGSYV RPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNH Q+NLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED
Subject   9674  *VYLLSLVLSYMTLRPNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEVGVFVYG*F*TGNTVASSRFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED  10366

Range 8: 10415 to 10909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
378.6 bits(820) 0.0 165/165(100%) 0/165(0%) Minus/Plus
Query     1078  HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP  1572
                HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP
Subject  10415  HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP  10909

Range 9: 11264 to 11755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
374.5 bits(811) 0.0 162/164(99%) 0/164(0%) Plus/Minus
Query      232  SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLSLLLRFFLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI  723
                SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLSLL RF LVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI
Subject  11264  SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLSLLPRFLLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI  11755

Range 10: 11192 to 11671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
361.7 bits(783) 0.0 155/160(97%) 0/160(0%) Minus/Plus
Query      316  *RTETGGHFNEYANGRGSGFSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*TDVPGRIET*GRPSRDRRGAV*SLHGRDGVCYR*W*GSKK*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKPE*QR*GVLG  795
                *RTETGGHFNEYANGRGSG SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK* DVPGRIET*GRPSRDRRGAV*SLHGR+GVCYR*W*GSK+*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKP *QR*GVLG
Subject  11192  *RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKPG*QR*GVLG  11671

Range 11: 9709 to 10197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
353.9 bits(766) 0.0 156/163(96%) 0/163(0%) Minus/Plus
Query     1790  DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMIFVLSEGSIVILY*SRRICLWTILNRQYCC**SILSL**FCCWFLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPPSVQFAFPHLGSAVVLLWPVVFTLKPKF  2278
                DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRM FVLSEGSIVILY*SRRICLW ILNRQYCC**SILS **FCCWFLR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEP S Q AFPHLGSAVVLLWPVVFTLKPKF
Subject   9709  DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGSAVVLLWPVVFTLKPKF  10197

Range 12: 10603 to 11004 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
314.5 bits(680) 0.0 134/134(100%) 0/134(0%) Minus/Plus
Query      983  TNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK  1384
                TNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK
Subject  10603  TNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK  11004

Range 13: 9949 to 10353 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
306.2 bits(662) 0.0 128/135(95%) 0/135(0%) Plus/Minus
Query     1634  M*VLISRRNVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSKLY*RWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRQT*EPATELSQRQNRLLATVL  2038
                M*VLISRR+VRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKS+L *+WFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGR+T*EPA ELS+RQNRLLATVL
Subject   9949  M*VLISRRSVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVL  10353

Range 14: 9659 to 9949 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
223.3 bits(481) 0.0 96/97(99%) 0/97(0%) Plus/Minus
Query     2038  ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIILT*RHIRQH*GKKINLNRRKE  2328
                ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFII T*RHIRQH*GKKINLNRRKE
Subject   9659  ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIIWT*RHIRQH*GKKINLNRRKE  9949

Range 15: 9714 to 9950 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
183.4 bits(394) 0.0 78/79(99%) 0/79(0%) Minus/Plus
Query     2037  YVKIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA  2273
                YV+IMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA
Subject   9714  YVQIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA  9950

Range 16: 10240 to 10485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.3 bits(374) 0.0 80/82(98%) 0/82(0%) Minus/Plus
Query     1502  RGKLIVTV*REGCMLTRKGG*V*RGITSNVTSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI  1747
                RGKLIVTV*REGCMLTRKGG V*RGITSN TSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI
Subject  10240  RGKLIVTV*REGCMLTRKGGQV*RGITSNATSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI  10485

Range 17: 9697 to 9900 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 66/68(97%) 0/68(0%) Plus/Minus
Query     2087  HDTTFAQHEDHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F*RSVIYDN  2290
                HDTTFAQHE HSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F RSVIYDN
Subject   9697  HDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*FGRSVIYDN  9900

Range 18: 10958 to 11197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 79/80(99%) 0/80(0%) Plus/Minus
Query      790  PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGATIA  1029
                PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA
Subject  10958  PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA  11197

Range 19: 10961 to 11131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 55/57(96%) 0/57(0%) Minus/Plus
Query      856  NRCTIQR*GCGSIQNWS*QLLPRPGYCCYDWGVKCSS*GQE*CG*FAADI*GRVRQY  1026
                NRCTIQR*GCGSIQNWS*QLLPRPGYC YDWGVKCSS*GQE*CG*FAADI* RVRQY
Subject  10961  NRCTIQR*GCGSIQNWS*QLLPRPGYCRYDWGVKCSS*GQE*CG*FAADI*SRVRQY  11131

Range 20: 11798 to 11965 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.5 bits(272) 0.0 54/56(96%) 0/56(0%) Plus/Minus
Query       22  W*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRQRCTYYHDSKRSALPAQYIPYS  189
                W*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPR+RCTYYHDSKRSALP QYIPYS
Subject  11798  W*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRRRCTYYHDSKRSALPVQYIPYS  11965

Range 21: 11726 to 11875 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 48/50(96%) 0/50(0%) Minus/Plus
Query      112  EWINIFM*RGY*TLTRLETRYSR**IRDILGREGAPFRIVVVSTPLSGKT  261
                EWINIFM*RGY*TLTRLETRYSR**IRDIL REGAPFRIVVVSTP SGKT
Subject  11726  EWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTPSSGKT  11875

Range 22: 9508 to 9630 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 40/41(98%) 0/41(0%) Plus/Minus
Query     2357  QRNLH*RLHTKRKNLWRSAKVTYVIMYI*TNKQ*KIKEYTK  2479
                QRNLH*RLHTKRKNLWRSAKVTYVIMYI*TNKQ*KIKEY K
Subject   9508  QRNLH*RLHTKRKNLWRSAKVTYVIMYI*TNKQ*KIKEYLK  9630

Range 23: 9505 to 9627 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 38/41(93%) 0/41(0%) Minus/Plus
Query     2360  AFCIFFYFLLFVSLDVHYYVGYFGATPKVFPLCV*PLM*VS  2482
                +F IFFYFLLFVSLDVHYYVGYFGATP+VFPLCV*PLM*VS
Subject   9505  SF*IFFYFLLFVSLDVHYYVGYFGATPEVFPLCV*PLM*VS  9627

Range 24: 9506 to 9610 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 34/35(97%) 0/35(0%) Minus/Plus
Query     2377  LFVYSFIFYCLLV*MYIIT*VTLALRQRFFLFVCS  2481
                LF YSFIFYCLLV*MYIIT*VTLALRQRFFLFVCS
Subject   9506  LFRYSFIFYCLLV*MYIIT*VTLALRQRFFLFVCS  9610

Range 25: 9506 to 9604 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 32/33(97%) 0/33(0%) Plus/Minus
Query     2383  HKEEKPLA*RQSNLRNNVHLN*QTIKNKRIYKK  2481
                HKEEKPLA*RQSNLRNNVHLN*QTIKNKRI KK
Subject   9506  HKEEKPLA*RQSNLRNNVHLN*QTIKNKRISKK  9604

Range 26: 9537 to 9626 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 29/30(97%) 0/30(0%) Plus/Minus
Query     2361  ETYIKGYTQRGKTFGVAPK*PT**CTSKLT  2450
                ETYIKGYTQRGKT GVAPK*PT**CTSKLT
Subject   9537  ETYIKGYTQRGKTSGVAPK*PT**CTSKLT  9626

Range 27: 10414 to 10488 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 25/25(100%) 0/25(0%) Plus/Minus
Query     1499  TYTFRTPVSRLSRINILRQRPSIRC  1573
                TYTFRTPVSRLSRINILRQRPSIRC
Subject  10414  TYTFRTPVSRLSRINILRQRPSIRC  10488

Range 28: 9507 to 9623 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 37/39(95%) 0/39(0%) Minus/Plus
Query     2364  FLYILLFFIVC*FXXXXXXXXXXRYAKGFSSLCVAFNVG  2480
                FL ILLFFIVC*FRCTLLRRLLWRYA+GFSSLCVAFNVG
Subject   9507  FLDILLFFIVC*FRCTLLRRLLWRYARGFSSLCVAFNVG  9623

Range 29: 9693 to 9734 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 13/14(93%) 0/14(0%) Plus/Minus
Query     2253  KIHNFDVASYTTTL  2294
                KIHN DVASYTTTL
Subject   9693  KIHNLDVASYTTTL  9734

Range 30: 11935 to 11964 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 10/10(100%) 0/10(0%) Plus/Minus
Query       23  GSQSAFQQEI  52
                GSQSAFQQEI
Subject  11935  GSQSAFQQEI  11964

Range 31: 11936 to 11977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 11/14(79%) 0/14(0%) Minus/Plus
Query       10  ISC*KAD*LPPTQT  51
                ISC*KAD*LP + T
Subject  11936  ISC*KAD*LPRSLT  11977

Range 32: 10528 to 10554 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 9/9(100%) 0/9(0%) Minus/Plus
Query     1433  TITPLNEAS  1459
                TITPLNEAS
Subject  10528  TITPLNEAS  10554

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 11

Range 1: 11381 to 12652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
544.5 bits(1182) 0.0 234/424(55%) 0/424(0%) Minus/Plus
Query      303  DTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIE  1574
                D  L V D+ICLFLR LI E E  T  TVT+AVVTVPADYNSFKR F+V AL+GLGIPV+ ++NEPTAAALYSLAKS ++D+L+AVFDFGGGTFDVSFVKKKG+IL V++S GDNFLGGRDID A+   +K+K+ G     KL  FVS++KED+SN+ ++  H++P   G E+V LT  EL  +VAPF+ +AV++F   ++ F PD  +AV+TGGSSALV+VR  +A LP ++ VV+D  DFRCSVACGAKVYCD L G   LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT  Y+V   +VVYG++EGE NR++LNE TFR   +       TD  +++LS DGT+SV +NG+   NE+     +NV+ S  Y +GRED + + + EY   LN +   +    ++    K F+DL I+
Subject  11381  DIKLSVTDIICLFLRGLIKEAESETGKTVTSAVVTVPADYNSFKRGFIVTALRGLGIPVKAIINEPTAAALYSLAKSGLDDMLIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAELTEVVAPFAKKAVKIFSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGREDTQKEGVGEYCALLNAIRSTSVVPDDVLLGRKVFTDLNID  12652

Range 2: 11048 to 11335 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 61/96(64%) 0/96(0%) Minus/Plus
Query     1620  LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  1907
                + M+VGIDFGTTFST+C+S SG  GCT VAGS++VETQ+F+PE  + Y IGK AGK YRDGV GRLY+NPKRWVGV   N   +++KLKP Y+V++
Subject  11048  IPMDVGIDFGTTFSTLCYSASGAGGCTRVAGSIFVETQVFVPEEGTRYYIGKVAGKLYRDGVVGRLYLNPKRWVGVNAINFSSFMKKLKPAYSVEL  11335

Range 3: 12683 to 12922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 26/80(32%) 0/80(0%) Minus/Plus
Query       20  MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTT  259
                MDK  Y TG+   +EA  E   VV +  +         RGS  T+V   +    S  +  S +   A AYF L GG ++T
Subject  12683  MDKVCYATGLTAVSEAYAEYERVVGENLLEYSTFRIPVRGSTLTLVKSGNEILASYPSEGSTAERKAVAYFTLVGGFSST  12922

Range 4: 11380 to 11847 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.8 bits(325) 0.0 92/156(59%) 0/156(0%) Plus/Minus
Query     1108  LDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVS  1575
                LD SS I DT   +L     P  F L     A SISLPPKKLSP E  T  I PFFLT +TSKVPPPKSKTA N SS+ DLA E +AAAVGS    LTGIPRP  A T K  L EL*SAGTVTTA VTV  V LS S I   +N+HI S T + +S
Subject  11380  LDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTAINISSSPDLASEYKAAAVGSFMMALTGIPRPRRAVTMKPLLNEL*SAGTVTTAEVTVFPVSLSASLINPRRNRHIISVTDSLIS  11847

Range 5: 11053 to 11274 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 45/74(61%) 0/74(0%) Plus/Minus
Query     1681  TPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSI  1902
                TPTH  G  YNLP+TPSR  FPA LPI  ++  SG    VST  LPAT VQP  PD E   VL VVPKS+PTSI
Subject  11053  TPTHRLGFRYNLPTTPSRYNFPATLPI*YLVPSSGTNTCVSTKMLPATLVQPPAPDAE*HRVLNVVPKSMPTSI  11274

Range 6: 11932 to 12159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 41/76(54%) 0/76(0%) Plus/Minus
Query      796  LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGAT  1023
                LP K SQ T AP ATEHLKS  S TTL   G  A   LT T+AL+PPV TA   SG  LS       TA   NGAT
Subject  11932  LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSGRNLSIASEKIFTAFLANGAT  12159

Range 7: 12235 to 12270 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 10/12(83%) 0/12(0%) Plus/Minus
Query      685  VYEQGIGLPFGK  720
                VYEQGIG P GK
Subject  12235  VYEQGIGFPLGK  12270

Range 8: 12298 to 12357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 12/20(60%) 0/20(0%) Plus/Minus
Query      598  NVGSFRKALLFSPSNIPYTT  657
                NV S R    FSPS  PYTT
Subject  12298  NVSSLR*LRFFSPSYTPYTT  12357

Range 9: 12394 to 12576 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 20/61(33%) 0/61(0%) Plus/Minus
Query      379  FSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSV  561
                F+  +YS       SSLP  *  + +TF       S   S PL +T +VPS ++     SV
Subject  12394  FNNAQYSPTPSFCVSSLPVE*DFDFTTFEGRVVLNSLTPSLPLIVTLSVPSSDKSYLTVSV  12576

Range 10: 11054 to 11332 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 36/93(39%) 0/93(0%) Plus/Minus
Query     1623  LHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFH  1901
                LH VC F     T  V   +  PPFR+ +Q    ++ I FP +FT  VS+A FR K L F  + T H  TT+  R   A  T+ GS++Y + H
Subject  11054  LHAVCWFQLFHETAKVYRVYADPPFRI*VQSPYDSIPIQFPGNFTYIVSSAFFRDKYLRFYKDATCHPGTTSCTRRRIA*STKCGSEVYAHVH  11332

Range 11: 12074 to 12367 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 31/98(32%) 0/98(0%) Plus/Minus
Query      588  YAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRY  881
                + PER F+  +++ L F ++++ I  TH V   +   YW    +N  RL++++LV   I   ++QS+  +T   IAV    T + TSK+  V H   Y
Subject  12074  FTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASY  12367

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 8

Range 1: 10588 to 11484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.6 bits(486) 0.0 100/299(33%) 0/299(0%) Minus/Plus
Query      288  KQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIEENFLK  1184
                +++I G      L + ++ +KE +  N       +    G+E + ++ DEL+A+  PF  RA+++F  G +     P++ V+TGGS AL  V+  +  LP +S+  +DS  FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+  F  +VIFPKG PIP  Y   + + G  + YGI EGE+NR +LNE  F+G   R  +  ++D  ++ +S DG + + V+G ++KN  L    +    +  Y S  +    +    Y+   + LH    +  ++ +    + D  I  NFL+
Subject  10588  EKRITGVIDAGILAVMIADLKEKICVNGGTQYTQVKTSNGLETLSMSVDELNAVSEPFVDRAIKIFAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRLPAPVSASAHAYRYVSSMKKYLIQLENNYVDMFSELHGDKISIDDVYDATGAYFDKNILVNFLR  11484

Range 2: 10198 to 10590 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 70/131(53%) 0/131(0%) Minus/Plus
Query     1176  LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK  1568
                L+RVVD++ LF++ ++LE E      V+  V TVPA+YNSFKRSF+  AL+GLG P+R ++NEPT+AALY   +        AVFDFGGGT D+SF+ +  N++ V+FS GDNFLGGRDIDRAIV+ ++++
Subject  10198  LVRVVDLVFLFVKGILLETEEAVGKAVSGVVCTVPAEYNSFKRSFLGVALEGLGKPLRALINEPTSAALYGAVRGGALKETYAVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE  10590

Range 3: 10000 to 10149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 24/50(48%) 0/50(0%) Minus/Plus
Query     1620  TYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  1769
                TY IG  A   +  G  G LY+NPKRWVGV   N +    KL P Y VK+
Subject  10000  TYSIGHRAYSDFVAGKPGGLYINPKRWVGVDGYNFQAVKRKLNPEYEVKL  10149

Range 4: 9865 to 9915 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.9 bits(83) 0.0 15/17(88%) 0/17(0%) Minus/Plus
Query     1851  MEVGIDFGTTFSTICFS  1901
                MEVG+DFGTTFST CFS
Subject   9865  MEVGLDFGTTFSTACFS  9915

Range 5: 9934 to 9987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 9/18(50%) 0/18(0%) Minus/Plus
Query     1785  SGCTPVAGSVYVETQIFI  1838
                SGC  +  S +V TQ+FI
Subject   9934  SGCVTLVNSPFVPTQVFI  9987

Range 6: 10203 to 10571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.3 bits(193) 0.0 58/123(47%) 0/123(0%) Plus/Minus
Query     1195  TIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTL  1563
                TIALS+S PP+KLSP E  T +       N+ SKVPPPKSKTA    S   L    +AA VGS    L G+P P  A+  KLRL EL SAGTV T   T +    S SS      +   STTL
Subject  10203  TIALSMSRPPRKLSPFENSTLTTLLNLDMNDISKVPPPKSKTAYVSFSAPPLTAPYKAADVGSFMRALNGLPNPSRATPKKLRLNELYSAGTVQTTPDTALPTASSVSSNIPFTKRKTKSTTL  10571

Range 7: 10921 to 11154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 26/78(33%) 0/78(0%) Plus/Minus
Query      618  SSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSK  851
                S++ L F Y++ H ++ +  +  I   Y  T  +NY   +    VR R+   V+ SQ A+   NI +NLS   HR SK
Subject  10921  STIRLTFYYSILHSTSRYLKTCFIFRRYGVTLGKNYDLRET*QFVRQRLGNRVN*SQIAMPR*NITINLSTYGHR*SK  11154

Range 8: 9864 to 9914 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 15/17(88%) 0/17(0%) Plus/Minus
Query     1852  EKQIVLKVVPKSIPTSI  1902
                EKQ VLKVVPKS PTSI
Subject   9864  EKQAVLKVVPKSSPTSI  9914

Plum bark necrosis and stem pitting-associated virus, complete genome

Sequence ID: Length: 14214 Number of Matches: 7

Range 1: 9856 to 10617 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 62/254(24%) 0/254(0%) Minus/Plus
Query      333  TQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNK  1094
                T  ++  +G +  ++L++ +L+ I  P+  RA  + K  + +     V  V+ GGSS L  VR  + ++P I  + FD + +R +VA GA +Y    +G++  RL+D + N+L++++  F   ++ PK  PIP   T  + +   +  + + EGE+  A LNE  F            + + +  +  DG +S  + G+ +KN  +V         L ++   E L      +Y++   +   +    K+ S++
Subject   9856  THTVLLKDGSMRTLNLSNSDLEEICVPYLERAATLVKDVIMSNSVREVDLVLIGGSSVLPGVRKSLLSIPNIRSIYFDKSIYRAAVAVGASLYTASFSGSTRFRLIDCVANSLSNDLKPFFAKLVLPKSHPIPTKVTQNFDMPSYNTAFVLHEGESPNALLNERCFSAPLNTSEFKAGSGILEVVVGEDGRISASLQGKLLKNVVVVQDVLPSTKVLKFQDTVERLIKPEAEKYVSGWQVYSGEDLVSKSPSDR  10617

Range 2: 9379 to 9594 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 37/72(51%) 0/72(0%) Minus/Plus
Query     1353  LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSL  1568
                ++ VVD+I L+++ L+      T+  V +A  +VPADYNSFKRSFV  A   LGI VR V+NEPTAA   SL
Subject   9379  VMPVVDLIYLYIKGLVQLTISQTNLQVGSASCSVPADYNSFKRSFVYTACSALGIGVRAVINEPTAAGFCSL  9594

Range 3: 9631 to 9753 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.8 bits(135) 0.0 25/41(61%) 0/41(0%) Minus/Plus
Query     1197  VFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAI  1319
                V+DFGGGTFDVS +    N++ V+ S GDN LGGRDID A+
Subject   9631  VYDFGGGTFDVSLLAVSNNVIVVVDSRGDNLLGGRDIDAAL  9753

Range 4: 9238 to 9333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 14/32(44%) 0/32(0%) Minus/Plus
Query     1617  LYVNPKRWVGVTRDNVERYVEKLKPTYTVKID  1712
                +Y + KRWVG    N   +  KLKP Y V +D
Subject   9238  VYRDIKRWVGCNHINESEFRRKLKPEYIVVVD  9333

Range 5: 9387 to 9596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 35/70(50%) 0/70(0%) Plus/Minus
Query     1351  AKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTT  1560
                ++E + AAVGSL T  T +PR   A  TKLRL EL*SAGT+  A  T   V+   S  K L  K+I STT
Subject   9387  SREQKPAAVGSLMTARTPMPRALQAV*TKLRLNEL*SAGTLQEALPTCRFVWEIVSCTKPLIYKYIKSTT  9596

Range 6: 9630 to 9749 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 22/40(55%) 0/40(0%) Plus/Minus
Query     1201  ALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKT  1320
                A S+SLPP +LSP E  T        + ETSKVPPPKS T
Subject   9630  AASMSLPPNRLSPLESTTTITLLETASKETSKVPPPKSYT  9749

Range 7: 9060 to 9113 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 14/18(78%) 0/18(0%) Plus/Minus
Query     1849  GEKQIVLKVVPKSIPTSI  1902
                GEK  +LKVVPKSIP SI
Subject   9060  GEKHTLLKVVPKSIPNSI  9113

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 10

Range 1: 10625 to 11119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
178.9 bits(384) 0.0 79/165(48%) 0/165(0%) Minus/Plus
Query     1065  VVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG  1559
                + D+I LFL+ LI E E  T   V     +VPA YNSFKRSF++ ALKGLG P+R +VNEPTAA L  ++ S  ++ +  VFDFGGGTFD+S + K+G +L VI + GDN+LGGRD+D  I++ I   ++     +   I VS MKE +S+  A T+ +IP+E G
Subject  10625  ITDLIALFLKGLITEAETQTGVAVVGVTCSVPAKYNSFKRSFLMTALKGLGKPLRALVNEPTAAGLLGMSVSSNDNTVYGVFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG  11119

Range 2: 11114 to 11602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 62/163(38%) 0/163(0%) Minus/Plus
Query      585  EGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVS  1073
                +G  ++   T D+L +   PF  RAV++F   + +    P   V+TGGS+AL  + +   ++  ++ V+++   FR SVA GAK+Y D+L   S L L+D+L+ TL+D++  F+  ++FPKG+ IP ++   YTVG  +V YG++EGE N  +LN+ TF+GV+
Subject  11114  DGSRQIASYTLDQLISDSGPFLDRAVQMFSRLVRDLANPPTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA  11602

Range 3: 10463 to 10564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 17/34(50%) 0/34(0%) Minus/Plus
Query     1620  EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI  1721
                EG LYVNPKRW+G+   N   +++KLKP + V +
Subject  10463  EGLLYVNPKRWIGMNSRNKHIFMDKLKPQHEVLV  10564

Range 4: 10283 to 10333 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 14/17(82%) 0/17(0%) Minus/Plus
Query     1851  MEVGIDFGTTFSTICFS  1901
                MEVGIDFGTTFST+C++
Subject  10283  MEVGIDFGTTFSTLCYN  10333

Range 5: 10358 to 10405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/16(50%) 0/16(0%) Minus/Plus
Query     1785  CTPVAGSVYVETQIFI  1832
                C  +AGS+YV T+I +
Subject  10358  CVRIAGSIYVPTEILV  10405

Range 6: 10630 to 11001 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 57/124(46%) 0/124(0%) Plus/Minus
Query     1183  LITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITS  1554
                LI   I  S SLPP+ LSP+  +T + FP F   E SKVPPPKSKT     S  D       AAVGSLT+   G P+PF A   KL L EL  AGT      T   V +S S IK L+ + I S
Subject  10630  LIVFIIFASTSLPPR*LSPSAPITPNTFPLFNIIEMSKVPPPKSKTPYTVLSLLDTLIPNNPAAVGSLTSARNGFPKPFKAVIRKLLLNELYFAGTEQVTPTTATPV*VSASVIKPLRKRAIRS  11001

Range 7: 11470 to 11598 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 21/43(49%) 0/43(0%) Plus/Minus
Query      589  TPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFG  717
                TP NV SF +    SPS  PY TS  PTV L     GI +P G
Subject  11470  TPLNVRSFNQVEFSSPSYNPYGTSDFPTV*LVSKVLGIAVPLG  11598

Range 8: 10279 to 10320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 12/14(86%) 0/14(0%) Plus/Minus
Query     1864  VLKVVPKSIPTSIS  1905
                VL VVPKSIPTSI+
Subject  10279  VLNVVPKSIPTSIT  10320

Range 9: 10462 to 10500 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 10/13(77%) 0/13(0%) Plus/Minus
Query     1684  PTHLFGLTYNLPS  1722
                P HLFGLTY+ PS
Subject  10462  PIHLFGLTYSKPS  10500

Range 10: 8384 to 8455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 10/24(42%) 0/24(0%) Plus/Minus
Query     2131  LPRFLF*GELVLSQSRAKTYLCRH  2202
                +PR L    L+LS+ R   Y C+H
Subject   8384  VPRPLMQNSLLLSRRRTVLYPCKH  8455

Nucleotide Sequence (698 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
70
140
210
280
350
420
490
560
630
698

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
385.5 2559.4 9% 2.765e-106 59% NC_004667
299.4 783.2 22% 2.362e-80 30% NC_022072
234.3 402.9 25% 9.121e-61 39% NC_016509
135.3 491.0 39% 3.26e-55 29% NC_029783
107.4 372.5 23% 4.468e-42 36% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 14

Range 1: 7618 to 8163 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
385.5 bits(835) 0.0 178/182(98%) 0/182(0%) Minus/Plus
Query      152  ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGSSKLNE  697
                ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFG+SK ++
Subject   7618  ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSD  8163

Range 2: 7617 to 8162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
384.1 bits(832) 0.0 172/182(95%) 0/182(0%) Minus/Plus
Query      153  GVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHETGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HMVGK*FSLVHLVVRST*GIRL*LYCS*W***PHI*SAAVRY*YVGSER*FWF*RKDI*PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VWKLQT*R  698
                GVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHE GGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*H+VGK*FSLVHLVVRST*GIRL*LYCS* ***P+I*SAAV Y*YVGSER*FWF*RKD *PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VW  Q  R
Subject   7617  GVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHEAGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YVGSER*FWF*RKDF*PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VWSFQNFR  8162

Range 3: 7619 to 8143 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
377.3 bits(817) 0.0 170/175(97%) 0/175(0%) Plus/Minus
Query      172  QT*RRV*VDREQKRDYPRLELKT*NKNMEQLG*ISLRQNQNYRSEPTYQYLTAAD*I*GYHHH*LQYNYNLIP*VLRTTRCTRLNYFPTMC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQXXXXXXXXXXXXEHSEICRTY*YPVHRCSIAGCPPNCSSMQPPT  696
                QT*RRV*VDREQKRDYPRLELKT*NKNMEQLG* SLRQNQNYRSEPTYQY TAAD*I*GYHH *LQYNYNLIP*VLRTTRCTRLNYFPT C*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPP S*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPT
Subject   7619  QT*RRV*VDREQKRDYPRLELKT*NKNMEQLG*KSLRQNQNYRSEPTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPPAS*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPT  8143

Range 4: 7618 to 8154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
352.1 bits(762) 0.0 172/179(96%) 0/179(0%) Plus/Minus
Query      161  FGASKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVKYLYVKTKIIAQXXXXXXXXLPTKYEAXXXXXXXXXXXXSPKYYGQQGAQD*TISQPCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQL  697
                FG+SKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVK LYVKTKIIAQNRRINI RLPTKY+AIIT NYNITII*SPKYYGQQGAQD*TISQP VSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHL HESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQL
Subject   7618  FGSSKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLLHESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQL  8154

Range 5: 7710 to 7931 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
175.2 bits(376) 0.0 74/74(100%) 0/74(0%) Plus/Minus
Query      384  NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  605
                NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA
Subject   7710  NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  7931

Range 6: 7968 to 8153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 59/62(95%) 0/62(0%) Plus/Minus
Query      162  LELPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISNGCRLNMR  347
                LE PNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWL IFTSKPKLSLRTDVSISNGCRLN+R
Subject   7968  LEAPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISNGCRLNIR  8153

Range 7: 7617 to 7670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 18/18(100%) 0/18(0%) Plus/Minus
Query      645  V*YCRMSPKLFLNAAANS  698
                V*YCRMSPKLFLNAAANS
Subject   7617  V*YCRMSPKLFLNAAANS  7670

Range 8: 7619 to 7930 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
244.4 bits(527) 0.0 102/104(98%) 0/104(0%) Minus/Plus
Query      385  SWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTHGWEIV*SCAPCCP*YLGD  696
                SWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*+RWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLT GWEIV*SCAPCCP*YLGD
Subject   7619  SWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*SRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD  7930

Range 9: 8033 to 8158 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 39/42(93%) 0/42(0%) Minus/Plus
Query      157  T*RYLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLEAPNL  282
                T*R+LTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLE P L
Subject   8033  T*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLELPKL  8158

Range 10: 8005 to 8163 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 35/53(66%) 0/53(0%) Plus/Plus
Query       26  SVWGVMFCFEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFGASKLNE  184
                SV    F F+V+IFN A  YFCSKFL  V DSLFFVPDP  LFVKFGASK ++
Subject   8005  SVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSD  8163

Range 11: 7981 to 8154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 36/58(62%) 0/58(0%) Minus/Minus
Query        2  FGSSKLNEQIKWIGNKKQTIHNMT*KLRTKITNSLVKYPYLKTKHNTPNRPTKNQQPP  175
                FGSSKLNE+ KWIGNKK+TI ++ *KLRTKI +SLVK  Y+KTK    NR    Q+ P
Subject   7981  FGSSKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLP  8154

Range 12: 7985 to 8152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 35/56(62%) 0/56(0%) Minus/Minus
Query        6  WKLQT*RTD*MDREQKTDYPQHDIKT*NKNNKQLS*ISLPQNKT*HPKPTNQKPTA  173
                WKLQT*R  *+DREQK DYP+ ++KT*NKN +QL * SL QN+    +PT Q PTA
Subject   7985  WKLQT*RRV*VDREQKRDYPRLELKT*NKNMEQLG*KSLRQNQNYRSEPTYQYPTA  8152

Range 13: 7982 to 8158 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 35/59(59%) 0/59(0%) Plus/Plus
Query        3  GGCWFLVGRFGVLCFVLR*GYLTKLFVIFVLSFYVMLWIVCFLFPIHLICSLSLELPNL  179
                G  W L+ RF  +  VL * +LTKL  IFVLSF     IV FLFPIHL  SLSLELP L
Subject   7982  GSRWILIRRF*AIILVLT*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLELPKL  8158

Range 14: 7989 to 8153 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 33/55(60%) 0/55(0%) Minus/Minus
Query       10  LEAPNLTNRLNGSGTKNRLSTT*HKNLEQK*QTA*LNILTSKQNITPQTDQPKTN  174
                LEAPNLT  L+GSGTK RLS+T* KNLEQK   A L I TSK  ++ +TD   +N
Subject   7989  LEAPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISN  8153

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 10

Range 1: 8685 to 9221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
299.4 bits(647) 0.0 137/179(77%) 0/179(0%) Minus/Plus
Query      158  LAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGSSKL  694
                LA  +  +LGDIR Y  YELDISKYDKSQ++LMKQVEELILLTLGVD+EVL TFFCGEYDS+V   +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG +  Y+VVSGDDSLIFSR  LDIDTS LSDNFGFDVK+F QA PYFCSKFLVQ +  LFFVPDPLK+F+K G S++
Subject   8685  LAQRISADLGDIRAYTCYELDISKYDKSQASLMKQVEELILLTLGVDKEVLDTFFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLKMFIKLGVSRV  9221

Range 2: 8777 to 8992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 50/72(69%) 0/72(0%) Plus/Minus
Query      387  PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  602
                PL+ TDNKV  T +FPN V APPLRL* PTD TNS     T LSYSPQK V KTSLSTP VK I+SSTCF+R
Subject   8777  PLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSPQKNVSKTSLSTPRVKRISSSTCFIR  8992

Range 3: 9032 to 9226 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 35/65(54%) 0/65(0%) Plus/Minus
Query      153  SLSLELPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISNGCRLNMR  347
                S +LE PNL     GSGTK    S  T+N EQK G A L  FTS PKLSL  +VSISN  R  +R
Subject   9032  SATLETPNLINIFRGSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNSVREKIR  9226

Range 4: 8716 to 8778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 9/21(43%) 0/21(0%) Plus/Minus
Query      601  EHSEICRTY*YPVHRCSIAGC  663
                E  E CRTY  P+H      C
Subject   8716  ETLETCRTYLCPIHNTCTLLC  8778

Range 5: 8736 to 8984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 35/83(42%) 0/83(0%) Plus/Minus
Query      395  YYGQQGAQD*TISQPCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFI  643
                ++ QQG +   +  P V TT +PL  +RQ   LR   H  +I TTKE   +  IN +  E +L HL H+  LR VVLT +QFI
Subject   8736  HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLRG*RHQTVIFTTKERV*DLLINPQS*ENKLFHLLHQRRLRLVVLTYVQFI  8984

Range 6: 9087 to 9221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 24/45(53%) 0/45(0%) Plus/Plus
Query       44  FCFEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFGASKL  178
                F F+V++F  AV YFCSKFL      LFFVPDP  +F+K G S++
Subject   9087  FGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLKMFIKLGVSRV  9221

Range 7: 8728 to 8862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 23/45(51%) 0/45(0%) Minus/Plus
Query      517  TTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSM  651
                T  MNW  VSTT+L+ L *+RW+S +S*   LI +    SFVV+M
Subject   8728  TRVMNWT*VSTTSLKRL**SRWKSLFS*LWGLIRRS*TRSFVVNM  8862

Range 8: 8888 to 8977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 12/30(40%) 0/30(0%) Minus/Plus
Query      402  GIGVVCRLSEAQWWC*HMVGK*FSLVHLVV  491
                G+ +V   SEA+ WC H+V +    ++LVV
Subject   8888  GVSLVGWESEAKRWCEHLVREHSGALYLVV  8977

Range 9: 9053 to 9181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 13/43(30%) 0/43(0%) Minus/Plus
Query      198  VRY*YVGSER*FWF*RKDI*PSCSIFLF*VFSSSRG*SLFCSR  326
                + Y*++ ++   W *R+ +* SC++ LF V  +    ++ C+R
Subject   9053  IGY*HLITQ*QLWV*REAL*ASCALLLFEVPCADG*WTVLCTR  9181

Range 10: 9050 to 9232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 25/61(41%) 0/61(0%) Minus/Minus
Query        7  NSSLSLEAPNLTNRLNGSGTKNRLSTT*HKNLEQK*QTA*LNILTSKQNITPQTDQPKTNS  189
                + S +LE PNL N   GSGTKN   +   +N EQK* TA L   TS   ++   +   +NS
Subject   9050  SKSATLETPNLINIFRGSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNS  9232

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 4

Range 1: 8163 to 8663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.3 bits(505) 0.0 105/167(63%) 0/167(0%) Minus/Plus
Query      176  NNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVK  676
                + LGD+  YY YELDISKYDKSQ A MK VE  IL+ LGV   V+  FFCGEYDSVV     ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS+  L ID  +L ++FGFD+K+  Q APYFCSK+LV+  D  +F+PDP KLF+K
Subject   8163  DRLGDVSGYYVYELDISKYDKSQGACMKDVERRILIGLGVSESVVDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLK  8663

Range 2: 8234 to 8452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 38/73(52%) 0/73(0%) Plus/Minus
Query      387  PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA  605
                P     NKV +TK+FPNHV APP     PTD T+SF  ++TT SYSPQKK   T   TP    I  ST FM A
Subject   8234  PFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTPRPIKIRLSTSFMHA  8452

Range 3: 8519 to 8680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 24/54(44%) 0/54(0%) Plus/Minus
Query      159  SLELPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSI  320
                SL   +   +L+GSG K + S   TK  EQK GA W     S PKLS R   SI
Subject   8519  SLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVNLRSNPKLSSRILSSI  8680

Range 4: 8547 to 8678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 17/44(39%) 0/44(0%) Plus/Plus
Query       44  FCFEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFGASK  175
                F F++++      YFCSK+L    D  +F+PDPF LF+K    +
Subject   8547  FGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLKLSLER  8678

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 8

Range 1: 8437 to 8700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 57/88(65%) 0/88(0%) Minus/Plus
Query      428  AAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN  691
                A+ +   LGDI QYY YELDISKYDKSQ+ LMK  E  +L  LGV+ + L  FF GEYDS V    KEL LS+GSQRRSGGANTWLGN
Subject   8437  ASEVEERLGDISQYYCYELDISKYDKSQAGLMKDTERALLSMLGVESDTLDMFFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGN  8700

Range 2: 8749 to 8958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 38/70(54%) 0/70(0%) Minus/Plus
Query      170  YSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFG  379
                +  ++ SGDDSLIFS++ LD+DT+ LS  +GFDVK+ + + PYFCSK+ V+  D L FVPDP KL +K G
Subject   8749  FDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFKLLMKAG  8958

Range 3: 8526 to 8738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 32/71(45%) 0/71(0%) Plus/Minus
Query      390  LSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  602
                L + DN  +KT +FPNHV APPL  * P D  NS + + T  SYSP+K + + SLSTP++ +   S  F++
Subject   8526  LRSIDNSDNKTIVFPNHVFAPPLLR*LPIDKDNSLLCIETLESYSPEKNISRVSLSTPNILNNALSVSFIK  8738

Range 4: 8802 to 8957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 23/52(44%) 0/52(0%) Plus/Minus
Query      171  PNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISN  326
                P   KSL+GSGTK++ S   TK  EQK G       TS P   L+  VS S+
Subject   8802  PAFIKSLNGSGTKRKPSFVFTKYFEQK*GTDKSLSLTSNPYA*LKVVVSRSS  8957

Range 5: 8456 to 8512 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
22.6 bits(43) 0.0 8/19(42%) 0/19(0%) Plus/Minus
Query      616  CRTY*YPVHRCSIAGCPPN  672
                CRT+ YP+H  +     PN
Subject   8456  CRTWIYPIHNNNTEIYRPN  8512

Range 6: 8842 to 8958 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 19/39(49%) 0/39(0%) Plus/Plus
Query       50  FEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFG  166
                F+V++ + +V YFCSK+     D L FVPDPF L +K G
Subject   8842  FDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFKLLMKAG  8958

Range 7: 8458 to 8709 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 24/84(29%) 0/84(0%) Plus/Minus
Query      419  D*TISQPCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQ  670
                D  ISQP +   T  L  +RQ QF     +  ++   KE  +  +++    + +   + H + L  VVL  IQFI ++L  + Q
Subject   8458  DHRISQPRICPATPALTPNRQRQFFVVHRNA*VVFPGKEHIEGIALHA*HTQQRPFSVLH*ARL*LVVLGYIQFITIILRYIAQ  8709

Range 8: 8875 to 8952 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 12/26(46%) 0/26(0%) Plus/Minus
Query      176  LNEEFKWIGNKKETILDLN*KLRTKI  253
                L++EFKWIG+K + ++ L    R KI
Subject   8875  LHQEFKWIGHKAQAVIRLYKIFRAKI  8952

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 6

Range 1: 6256 to 6489 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 42/78(54%) 0/78(0%) Minus/Plus
Query      428  IRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN  661
                ++  +  E+DISK+DKSQ  L+KQ+EE++L  LGVD EVL+ ++  EY+SV  T  K L +SV +QRR+GG+NTWLGN
Subject   6256  VQNLFCSEVDISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGN  6489

Range 2: 6541 to 6747 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 34/69(49%) 0/69(0%) Minus/Plus
Query      170  SYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFG  376
                +++  SGDDSL+ SR P+  D   LS   GFDVK    A PYFCSK+++  ED +F VPD  KL  K G
Subject   6541  TFVCFSGDDSLVLSRDPIYFDFFKLSLELGFDVKFTPVATPYFCSKYIINTEDRIFIVPDIFKLVTKLG  6747

Range 3: 6277 to 6480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 28/68(41%) 0/68(0%) Plus/Minus
Query      437  PCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQF  640
                P V TT  PLR  R       R+  A +LTT    QN  INT+  +Y  L+LF++ TLRFV    + F
Subject   6277  PRVRTTCPPLRVYRNC*TFIERTAHAFVLTTIPPIQNLLINTQATKYHFLNLFYQRTLRFVKFRYVHF  6480

Range 4: 6576 to 6746 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 26/57(46%) 0/57(0%) Plus/Minus
Query      171  PNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISNGCRLN  341
                PN   +L  SGT K LSS     L QKYG A    FTSKP   L    S   G R N
Subject   6576  PNFVTNLKMSGTIKILSSVFIMYLLQKYGVATGVNFTSKPNSKLNLKKSKYIGSRDN  6746

Range 5: 6315 to 6497 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 27/61(44%) 0/61(0%) Plus/Minus
Query      420  TKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR  602
                T + PNHV  PP+ L   T+       VL TLSYS      KTS STP  +S  SS CF++
Subject   6315  TIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKRRSTISSICFIK  6497

Range 6: 6613 to 6747 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 16/45(36%) 0/45(0%) Plus/Minus
Query      170  SKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVKYLYVKTKIIAQ  304
                S+L  + K + N K+ IL +   L TK+WS     LYV+ ++  Q
Subject   6613  SQLRHQLKDVRNNKDPILGIYYVLATKVWSCNRCELYVEAQLQTQ  6747

Nucleotide Sequence (530 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
530

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
345.6 1644.8 18% 1.931e-94 75% NC_004667
155.5 155.5 30% 3.377e-37 41% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 2550 to 3035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
345.6 bits(748) 0.0 148/162(91%) 0/162(0%) Minus/Plus
Query       42  WVCLVAVMSQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSVVVTICTSGASDRLELRGAFDVSKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVHAFIMGNISS  527
                W  +VAVM+QAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFS+ VS YAKAMVHDNFNVLETL+SMP+AFI KVPGSVVVTICTSGASDRLELRGAFD+SKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSV+AFIMGN+S+
Subject   2550  WGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSNAVSVYAKAMVHDNFNVLETLMSMPRAFIRKVPGSVVVTICTSGASDRLELRGAFDISKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVYAFIMGNVSN  3035

Range 2: 2561 to 3034 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.0 bits(692) 0.0 148/158(94%) 0/158(0%) Plus/Minus
Query       43  LEMFPIMNACTESSVIGRGFPSSVFIAFMTLIESSTIALENTRKRLFFSFLPKVSFETSKAPLSSNLSEAPEVQMVTTTDPGTLQMNALGMDISVSKTLKLSCTIALA*VETTLEKQSPTV*KKSLKTPARLPSLAFIKL*ERILFALSLIA*DITAT  516
                LE FPIMNA TESSVIGRGFPSSVFIAFMTLIESSTIALE TRKRLFFSFLPKVSFE SKAPLSSNLSEAPEVQMVTTTDPGTL+MNALG+DISVSKTLKLSCTIALA* ET  EKQSPTV*KKSLKTPARLPSLAFIKL*ERILFALSLIA* ITAT
Subject   2561  LETFPIMNAYTESSVIGRGFPSSVFIAFMTLIESSTIALEKTRKRLFFSFLPKVSFEISKAPLSSNLSEAPEVQMVTTTDPGTLRMNALGIDISVSKTLKLSCTIALA*TETAFEKQSPTV*KKSLKTPARLPSLAFIKL*ERILFALSLIA*AITAT  3034

Range 3: 2550 to 3032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
309.9 bits(670) 0.0 125/161(78%) 0/161(0%) Plus/Minus
Query       45  RNVPHYERMYRIFSDW*GFSIFCLHCFHDLD*IFNDSPRKHAQATILQLPTKGLFRNVKSTPELQPV*SSRSTNGNYN*PRYFTNERFGHGYKRLQNVEIIVHHCLSVGGDYTRKTVTHGLKEELEDPGETPLTGFYKVIRANTLRPILNCLRHNGNQTHP  527
                RNVPHYER+YRIFS+W GFSIFCLHC HDL+*IF+DSPR+ AQATILQ PT+GL RN+K TPELQPV*SSRS NGN N PRYFT+ER GH +KRLQNVE+IVHHCLS+ GD  RKT+ +GLKEELEDPGETPLTGFYKVI ANTLRPILN L HN +   P
Subject   2550  RNVPHYERIYRIFSNWQGFSIFCLHCLHDLN*IFHDSPREDAQATILQFPTEGLLRNIKGTPELQPV*SSRSANGNNNRPRYFTDERSGHRHKRLQNVEVIVHHCLSIDGDCVRKTIAYGLKEELEDPGETPLTGFYKVIGANTLRPILNRLSHNSDN*TP  3032

Range 4: 2570 to 3034 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
283.3 bits(612) 0.0 126/155(81%) 0/155(0%) Minus/Plus
Query       43  YVSGN*G*GEEYSLL*LYKSQ*GESRRGLQALLSDRG*LFFECSLHLR*GNGAR*FQRFGDAYIHAQSVHL*STWVSCSYHLYFWSFRQVGAQGCF*RFERDLW*EAEE*SLARVFEGYR*RFNQGHESNEDRRWKTPTNH*RFCTCVHNGEHF*  507
                Y SG+*G*GEEYSLL*LYKSQ*GESRRGLQALLSDR  LFFE SL L *GNGAR* QRFGDAY++AQSVH *STWV C YHL+FWSFRQVGAQGC * FE DL *E EE*SLAR+  GYR RFN GHE NEDRRWKTP N+*RFC CVHNGE F*
Subject   2570  YGSGD*G*GEEYSLL*LYKSQ*GESRRGLQALLSDRRRLFFERSLRLC*GNGAR*LQRFGDAYVYAQSVHP*STWVCCCYHLHFWSFRQVGAQGCL*YFEGDLR*ETEE*SLARLL*GYRGRFN*GHEGNEDRRWKTPANY*RFCICVHNGERF*  3034

Range 5: 2569 to 3033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.3 bits(494) 0.0 124/155(80%) 0/155(0%) Minus/Plus
Query       44  LCLRQLRIGRRVFALITL*KXXXXXXXXXXXXXXRPWVTVFRV*SPPTLRQWCTIISTFWRRLYPCPKRSFVKYLGQL*LPFVLLELQTGWSSGVLLTFRKRPLVGS*RIVACACFRGLSLKIQSRS*KQ*RQKMENPYQSLKILYMRS*WGTFL  508
                L LR+LRIGRRVFA ITL*KPVRGVSPGSSSSSFRP   VFR  SP  LRQWCTI STFWRRL  CP+RS VKYLG L LPF LLELQTGWSSGV L FR+RP VG+*RIVACA   GLS KIQ RS*+Q*RQKMENP Q LKILYMRS*WGTFL
Subject   2569  LWLRRLRIGRRVFAPITL*KPVRGVSPGSSSSSFRP*AIVFRTQSPSMLRQWCTITSTFWRRLCLCPERSSVKYLGLLLLPFALLELQTGWSSGVPLIFRRRPSVGN*RIVACASSLGLSWKIQLRS*RQ*RQKMENPCQLLKILYMRS*WGTFL  3033

Range 6: 2686 to 2790 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 28/35(80%) 0/35(0%) Plus/Minus
Query      287  VLYK*TLWAWI*ASPKR*NYRAPLP*RRWRLHSKN  391
                VLY *TLWA  *ASPKR*+YRAPLP* R RL SKN
Subject   2686  VLYG*TLWA*T*ASPKR*SYRAPLP*HRRRLRSKN  2790

Range 7: 2833 to 2928 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 24/32(75%) 0/32(0%) Plus/Minus
Query      149  R*PSKTRASDYSSASYQRSLSKRQKHP*APTC  244
                R*P + RASDYSS SY+RS SK Q+HP*APTC
Subject   2833  R*P*RRRASDYSSVSYRRSPSKYQRHP*APTC  2928

Range 8: 2971 to 3033 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 18/21(86%) 0/21(0%) Plus/Minus
Query       44  *KCSPL*THVQNLQ*LVGVFH  106
                *K SPL*TH+QNLQ*L GVFH
Subject   2971  *KRSPL*THIQNLQ*LAGVFH  3033

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 3269 to 3748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.5 bits(333) 0.0 66/160(41%) 0/160(0%) Minus/Plus
Query       48  WVCLVAVMSQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSVVVTICTSGASDRLELRGAFDVSKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVHAFIMGNI  527
                W  +VA+M+QA+KDR KS+ S++ IKAS G L     + ++ V    +S ++ Y K ++ DNF+VLE L++ PK  I +VP ++ V I T G    +    AF V++       +  RLR FSRA+VED+IKV+  M   +GKP+P+TEDSV+  I+ N+
Subject   3269  WGLVVAIMAQAVKDRLKSLESFSIIKASNGCLVSTINIIYRRVMKIVTSAMTGYFKGVIRDNFSVLELLVNNPKKLIVRVPRAMEVEITTVGGVVEVNTANAFSVARSKMHDNFRKGRLRTFSRALVEDTIKVLGRMVDSEGKPVPVTEDSVYKKIVENL  3748

Nucleotide Sequence (661 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
67
134
201
268
335
402
469
536
603
661

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
515.6 2479.7 27% 1.722e-145 82% NC_004667
341.1 658.7 30% 6.189e-93 25% NC_022072
229.7 306.5 28% 2.041e-59 41% NC_016509
234.3 423.4 15% 8.519e-61 25% NC_029783
96.8 156.1 28% 2.566e-31 32% NC_007340

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 1533 to 2189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
515.6 bits(1119) 0.0 212/219(97%) 0/219(0%) Minus/Plus
Query        1  F*EPQEKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  657
                F +P+E+E+LRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCG VCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS
Subject   1533  FLKPREREKLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGNVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  2189

Range 2: 1583 to 2188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
441.4 bits(957) 0.0 195/202(97%) 0/202(0%) Plus/Minus
Query        2  EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALANG*LLLTESENCIE  607
                EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S T+APFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT QFTWPALT*YVKLPPISKKHT PHL EKIPLKQLRMALANG*LLLTESENCIE
Subject   1583  EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT*QFTWPALT*YVKLPPISKKHTLPHLLEKIPLKQLRMALANG*LLLTESENCIE  2188

Range 3: 1548 to 2186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
432.7 bits(938) 0.0 177/213(83%) 0/213(0%) Plus/Minus
Query        4  SAYVRKGEEPAYVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILRFSTTVRYRL*SRFG*EVARHV*ISPSCGKKENLIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSEWMTTPDRVGKLYRKLRKEFPQPLLF  642
                SAY+RKGE+PAYVREGMFIHLTTLTNIVGQVITFPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVHIHHKTR+ S IA+LRFSTTVR+RL*SRF *+V  HV ISPSCGKKE+LIDSPLHIFNV*DW+AY+ VH+ASF++IREAPPNIEEA+ TTPPGKDS+ETAPHG+SEW+TTPDRVG+LYRKL KEFPQ L F
Subject   1548  SAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVHIHHKTRIGSRIAVLRFSTTVRHRL*SRFS*KVTGHVRISPSCGKKEDLIDSPLHIFNV*DWIAYMTVHMASFDMIREAPPNIEEAHITTPPGKDSIETAPHGISEWVTTPDRVGELYRKLWKEFPQLLPF  2186

Range 4: 1541 to 2188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
369.9 bits(801) 0.0 180/216(83%) 0/216(0%) Minus/Plus
Query        2  ATGKGEAEGTLSGAFDTVFRLGQE*SSIR*RHAELFQRNLFPEVWWCMLLRYWGELHVSR*SWPRELPRMQPSPRR*RCEAENQ*DSLSFHSWGRFIRV*RPPNRSGFKVCILL*SRIAELRFQS*RGFYGGCVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGR*LPGLQCWSVW*DV*TFLL*RKRVLHLFLRTHF  649
                A GKGEAEGTLS AFDTV RLGQE*S IR* HAELFQ NLF EVW C+LLRYWGELHVS  SWP EL  MQ SPRR*RCEAENQ*D LSFHSWGRF+RV  P N SGFKVC+LL*SRIAELRF S  GFYGGCVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR*LPGLQCWSVW*DV*TFLL*RKRV HLFL THF
Subject   1541  AAGKGEAEGTLSRAFDTVLRLGQE*SPIR*CHAELFQWNLFQEVW*CVLLRYWGELHVSCQSWPCELSCMQSSPRR*RCEAENQ*DPLSFHSWGRFVRVQ*PSN*SGFKVCVLL*SRIAELRF*SRCGFYGGCVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHF  2188

Range 5: 1540 to 1959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.6 bits(558) 0.0 115/140(82%) 0/140(0%) Plus/Minus
Query      231  AAGIYRTHPP*NPRQLWNRNSAILDYSKIQTLKPLRLGGR*TRMNLPQLWKERESH*FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PSRKTVSKAPERVPSASPFPVA  650
                AAGIYRTHPP*NP +L NR+SAILDYSK QTLKPL+L G  TR NLPQLWKER SH*FSASHL*RLGL CI  SS GQL* DT*SSPQYRRS H+HTS KRF *NSSAW *RM DYS*PSR+TVSKA ERVPSASPFP A
Subject   1540  AAGIYRTHPP*NPHRL*NRSSAILDYSKTQTLKPLQLEGHWTRTNLPQLWKERGSH*FSASHL*RLGLDCIHDSSHGQL*HDT*SSPQYRRSTHYHTSWKRFH*NSSAWH*RMGDYS*PSRRTVSKALERVPSASPFPAA  1959

Range 6: 1999 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 41/47(87%) 0/47(0%) Plus/Minus
Query       51  NVHTSHHTDQHCRPGNHLPSSLTYRVPPSKLRRYHTTAPRGT*ELNR  191
                NVHTSHHTDQHCRPGNHLPSS TYRV PSKL RY TT PRGT*EL R
Subject   1999  NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCR  2139

Range 7: 1771 to 2187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
276.5 bits(597) 0.0 119/139(86%) 0/139(0%) Minus/Plus
Query        3  KM*SGESMRFSFFPQLGEIHTCLATS*PKRLQSLYLTVVENRRIAIPELTRVLWWMCTIYPRSRWQRLWIRRVRWYSI*LLCSPWSCCMVTAKFTWRNSIR**RGKVITWPTMLVSVVRCMNIPSLT*AGSSPFLTYAL  419
                KM*SGESMR SFFPQLGEI TC  T * KRLQSL LTVVENRR AI E  RVLWWMCTIYPRSR QRLWIRRVRW+S *LLCSPWSCC VT KFTW+NSIR *RGKVITWPTMLVSVVRCMNIPSLT*AG SPFL YAL
Subject   1771  KM*SGESMRSSFFPQLGEIRTCPVTF*LKRLQSLCLTVVENRRTAILEPMRVLWWMCTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYAL  2187

Range 8: 1597 to 1716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.7 bits(172) 0.0 35/40(88%) 0/40(0%) Minus/Plus
Query      474  PTRSGVVIHSLTPCGAVSTESFPGGVVVYASSILGGASRI  593
                PTRSGVV HSL PCGAVS ESFPGGVV+ ASSILGGASRI
Subject   1597  PTRSGVVTHSLMPCGAVSMESFPGGVVMCASSILGGASRI  1716

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 5

Range 1: 2258 to 2905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
341.1 bits(738) 0.0 133/216(62%) 0/216(0%) Minus/Plus
Query        4  EPQEKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRT  651
                +P EK+ ++E FPEL+I F DSVRSSHP ANA+R CFN  FS+RC  V F DIGGS TYHVKAG VNCHVCNPVLDVKD+KRRI+E+L++++  G+ Y S+++++EAAS+S+SYCS  SQ C  R + G+MVDVYD+   ++AEA+D KG ++FDL  M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T +Y RT
Subject   2258  KPSEKDMIKEAFPELTITFLDSVRSSHPVANAVRGCFNACFSKRCANVKFVDIGGSLTYHVKAGDVNCHVCNPVLDVKDMKRRISEMLYMTSGAGEVYKSTEIISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRT  2905

Range 2: 2305 to 2871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.6 bits(366) 0.0 98/189(52%) 0/189(0%) Plus/Minus
Query       38  TLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALANG*LLLTESENCI  604
                T E  C Y SP  PT     SP+  T VS+SSK TSPLP +SSTG+++ KS    PF S ASA      S TST+ P S L    C+   Q*+ + +AAS   S+    SP       IS ILRF S TS TGL TWQFT PALT  VKLPPIS   T  HL EK  LK  R ALA G*LLLTES+N I
Subject   2305  TRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASANSSNPRS*TSTMYPPSHLTEHSCEGVEQ*EMERDAASEIISVLL*TSPAPDVMYSISEILRFISFTSSTGLQTWQFTSPALTW*VKLPPISTNFTLAHLFEKQALKHPRTALATG*LLLTESKNVI  2871

Range 3: 2327 to 2518 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 27/64(42%) 0/64(0%) Plus/Minus
Query      391  NLIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSEWMTTP  582
                +L DSPLHI  +   +A +AVH+A FN++ +A PNI+E + + P  +  ++T    VS  MTTP
Subject   2327  HLRDSPLHILYIQHGIANMAVHIAGFNMVGQASPNIDELHVSAPL*ETGIKTPADCVSNRMTTP  2518

Range 4: 2612 to 2872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 22/87(25%) 0/87(0%) Plus/Minus
Query       37  YVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILR  297
                + R+ + I  +  T+ V Q ++   H  ++ L V+   T QQL+G+H++ +E      +     L+   IV ++H +  +   A LR
Subject   2612  HTRKFVRI*FSAETHGVYQFVSSTSHAGVQLL*VHLTTTSQQLYGKHEAQVEDHHPFHVQRFG*LVEPKIVDVNHVSPFTPNGAFLR  2872

Range 5: 2271 to 2507 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 31/79(39%) 0/79(0%) Plus/Minus
Query      402  FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PSRKTVSKAPERVPSASP  638
                FSAS+       C  GSS  +L*    S PQYRR+    TS +   *N+   R*+ DDYS  + +T   A E+ P + P
Subject   2271  FSASYPLHPARDCKHGSSHRRL*HGRSSFPQYRRTSR*RTSLRNRH*NTRGLR*QQDDYSSLNLRT*L*ALEKPPLSCP  2507

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 3

Range 1: 2129 to 2761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.7 bits(495) 0.0 96/211(45%) 0/211(0%) Minus/Plus
Query        7  KERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVR  639
                KE L   FPEL I F DSV SSH   NA+RSCFN +++ +  GV F DIGGS  YHV+ G  +CH CNPVLD KD +RR  E L L+TA         +L + A+K+++YC  +++ CD +A  GFMVDVYD+   ++A+A++KK   +F+L LMFP+EL   +G + + EL   V R+GD + Y VG  G+ Y HS   +  FF  + V+
Subject   2129  KESLTRAFPELFITFLDSVSSSHSLCNAVRSCFNSLYASKYRGVPFVDIGGSVAYHVRNGDKDCHCCNPVLDYKDCRRREEECLRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQ  2761

Range 2: 2479 to 2703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 31/75(41%) 0/75(0%) Plus/Minus
Query       65  SPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQ  289
                SP  PT+    SP   T+  SS     P    SS GNI+  SN    F S A A      S TST+KP  AL SQ
Subject   2479  SPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFISFFSSACANSKTSKS*TSTMKPTGAL*SQ  2703

Range 3: 2206 to 2352 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 23/49(47%) 0/49(0%) Plus/Minus
Query      416  SLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMAL  562
                SL SRTGL   Q   P  T*   LPP+S   TP +L     LK  R AL
Subject   2206  SL*SRTGLQQ*QSLSPLRT**ATLPPMSTNGTPLYLLAYNELKHERTAL  2352

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 6

Range 1: 2664 to 3284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.3 bits(505) 0.0 94/207(45%) 0/207(0%) Minus/Plus
Query       22  EKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT  642
                EK  L + FPEL ++F DSV SSHP  NA+R CFN +FS     + F DIGGS +YH+K G+VN H CNP +D KD KRR +E+L L            L +  ASK+ ++C ++++ C  + +AGFMVDVYD+S  +VA ++  KG   FD+  M PVEL+  +G   ++EL+T+V R+GD L Y+VG  G+ Y+HSF  V    T
Subject   2664  EKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMCFNALFSHNYKDIPFVDIGGSISYHIKHGNVNAHCCNPTVDAKDAKRRESELLTLRRESYGDATIQQLSSSVASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLT  3284

Range 2: 2708 to 2899 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 30/64(47%) 0/64(0%) Plus/Minus
Query      407  RFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALANG*LLLTESEN  598
                RF SL S  GL    FT+P L *   LPPIS       L EK  LK +  AL  G*L  T S N
Subject   2708  RFASLASTVGLQQ*AFTFPCLI**DMLPPISTNGMSL*L*EKRALKHILTALHIG*LEKTLSLN  2899

Range 3: 2975 to 3145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 24/57(42%) 0/57(0%) Plus/Minus
Query      161  SSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEA  331
                SSTG+I+  S    P ++   AT     SYTSTI PAS    Q   S +Q    FEA
Subject   2975  SSTGSIKTMSKVLTPLIAKLRATSYELRSYTSTINPASHFLVQHLVSFMQKVAVFEA  3145

Range 4: 3176 to 3286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 17/37(46%) 0/37(0%) Plus/Minus
Query       20  KVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSS  130
                +V+   T  KEC Y SP  PTL*   SP   T V +S
Subject   3176  QVRREKTF*KECWYESPVPPTL*VSRSPLRVTTVFNS  3286

Range 5: 2694 to 2897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 23/68(34%) 0/68(0%) Plus/Minus
Query      409  LHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSEWMTTPDRVGKLYRKL  612
                L +F V  WV  +++H+   ++I  A   I E        K+ VET P+ V+  MT  D V KL  +L
Subject   2694  LRVFGVHCWVTTMSIHIPVLDMIGYASSYIHEWDVLIIVRKEGVETHPYCVTHRMTREDTVLKLQFQL  2897

Range 6: 3042 to 3260 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 18/73(25%) 0/73(0%) Plus/Minus
Query       46  EGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHK  264
                +G+ + ++  ++ + + I    +  ++FL     V+    +G+HK  +E        +  HL+   IVHIHHK
Subject   3042  KGVLV*ISRSSHTISEQIPLTRYNGVQFLNSVRPVSSY*FYGKHKDDVEGSHPFNSQTPSHLI*AQIVHIHHK  3260

Tomato chlorosis virus segment RNA 1, complete sequence

Sequence ID: Length: 8595 Number of Matches: 2

Range 1: 1794 to 2069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.8 bits(205) 0.0 38/92(41%) 0/92(0%) Minus/Plus
Query      367  EKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGG  642
                EK ++ ++FPEL + F+D+  SSHP A A+R C N I ++RCG   F D GG   +++     N HVC P++D KD  R I+    L T  G
Subject   1794  EKRKVIDMFPELCLNFTDTSYSSHPIATAIRCCENFIMAKRCGNEDFIDAGGDVVHYMLESVKNVHVCTPIVDTKDAHRHISRSAMLDTMWG  2069

Range 2: 2082 to 2363 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 30/94(32%) 0/94(0%) Minus/Plus
Query       37  VSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNV  318
                VS+C  +++ C         V+VYD++ +Q+A+A+    A  FD +L+ P E+     +VYL      V   GD + Y  G  GE Y H   N+
Subject   2082  VSFCEYKTETCTVEKTNIVAVEVYDMTLKQMAQALLSHKAKRFDFSLIIPPEVCDPVCDVYLLNNSLHVTNNGDKIEYAYGDFGESYFHDRENL  2363

Nucleotide Sequence (1359 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
136
272
408
544
680
816
952
1088
1224
1359

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
853.8 5680.4 38% 0 88% NC_004667
192.6 766.4 34% 2.731e-97 32% NC_022072
172.4 304.1 29% 3.371e-45 23% NC_016509
154.6 253.4 12% 2.007e-36 43% NC_018458
79.4 296.9 10% 9.87e-36 35% NC_030746

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 18

Range 1: 4647 to 5732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
853.8 bits(1857) 0.0 351/362(97%) 0/362(0%) Minus/Plus
Query      252  LAEGKQVKAEPPRQRNLTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS  1337
                +AE KQV+ E P+QR+LTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS
Subject   4647  VAEKKQVQVEQPKQRSLTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS  5732

Range 2: 16035 to 16283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 80/83(96%) 0/83(0%) Minus/Plus
Query        2  IQRAGYLETYLGDGQADTDIFFDVLTNNRAKVRWLVNKDHSAWCGILDDLKWEESSKEKFKGRDILDTYVLSSDYPGFK*SCF  250
                IQRAGYLETYLGDGQADTDIFFDVLTNN+AKVRWLVNKDHSAWCGIL+DLKWEES+KEKFKGRDILDTYVLSSDYPGFK*SCF
Subject  16035  IQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCF  16283

Range 3: 4649 to 5731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
797.0 bits(1733) 0.0 350/361(97%) 0/361(0%) Plus/Minus
Query      253  E*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHHIEYVDXXXXXXXXXXDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFENLVAIVASLYTSSCTPQEHVLNIQSCLPALPSLIVRFLCLGGSAFTCFPSA  1335
                E*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SG RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSS+EFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHL+EKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR RGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFENLVAIVASLYTSSCTPQEHVLN+QSCLPALPSLIV+ LCLG S  TCF SA
Subject   4649  E*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFENLVAIVASLYTSSCTPQEHVLNMQSCLPALPSLIVKLLCLGCSTCTCFFSA  5731

Range 4: 16165 to 16284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 39/40(98%) 0/40(0%) Plus/Minus
Query        1  ESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHPISH  120
                ESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNH ISH
Subject  16165  ESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH  16284

Range 5: 16028 to 16174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 47/49(96%) 0/49(0%) Plus/Minus
Query      111  NIPHHALWSXXXXXXXXXXXXVKTSKNISVSACPSPKYVSR*PARCIRM  257
                NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCI +
Subject  16028  NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISL  16174

Range 6: 4702 to 5763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
775.4 bits(1686) 0.0 337/354(95%) 0/354(0%) Minus/Plus
Query      221  STKVRPVNSFVCLGRVPAVCSWMCTTKRLSPPGSQTHLPLSIT*KGGVRSFSQSWVRGIPIMVVAMFHQGGLVS*RIS*RQLSTQASLTIV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRATIFLCLAVFKGRTCIQ*TLSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIRIQRAGYLETY  1282
                S K RPVNSF CL RVPAVCSWMCTTKRLSPPGSQTHLPLSIT*KGGVRSFSQSWVRGIPIMVVAMFHQGGLV *RIS*RQLSTQAS T V*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LR TIFLCLAVFKGRTCIQ*T STKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFI+ + A   ETY
Subject   4702  SMKARPVNSFACLERVPAVCSWMCTTKRLSPPGSQTHLPLSIT*KGGVRSFSQSWVRGIPIMVVAMFHQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETY  5763

Range 7: 16036 to 16284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.4 bits(359) 0.0 77/83(93%) 0/83(0%) Minus/Plus
Query        1  YNVPVT*KHI*ETGRQTLIYFLTS*PTTEQR*GG*LIKTIARGVGYWMI*SGKRAARRNLRGETY*ILTFYRLIIQGLNEVAF  249
                YN PVT*KHI*ETGR TLIYFL S*PTT+QR*GG*LIKTIARGVGY MI*SGKRA RRNLRGETY*ILTFYRLIIQGLNEVAF
Subject  16036  YNAPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAF  16284

Range 8: 4650 to 5291 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
461.6 bits(1001) 0.0 197/214(92%) 0/214(0%) Plus/Minus
Query      693  IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDRVY*MQVRPLKTARHKKIVARSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGKCV*EPGGDSRFVVHIQLHTAGTRPKHTKLFTGLTFVDRQIPLPGRFGFYLFPLS  1334
                IRHAAG*LQHPAYTKDAPSCPERQTDAPFVD VY*MQVRPLKTARHKKIV RSYVYDHDLTTLPAL+REVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*T+V+DAWVLNCR*DIL* TRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGKCV*EPGGDSRFVVHIQLHTAGTR KH KLFTGL F+DRQ PL G    YLF LS
Subject   4650  IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGKCV*EPGGDSRFVVHIQLHTAGTRSKHAKLFTGLAFIDRQTPLFGLLDLYLFFLS  5291

Range 9: 5334 to 5729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
329.6 bits(713) 0.0 131/132(99%) 0/132(0%) Plus/Minus
Query      255  MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST  650
                MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST
Subject   5334  MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST  5729

Range 10: 16035 to 16283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.2 bits(317) 0.0 78/83(94%) 0/83(0%) Plus/Minus
Query        2  KATSFKPWIIRR*NVSI*YVSXXXXXXXXXXXXQIIQYPTPRAMVFIN*PPYLCSVVG*DVKKYISVCLPVS*ICF*VTGTLY  250
                KATSFKPWIIRR*NVSI*YVSPLKFLL ALFPLQIIQYPTPRAMVFIN*PPYLC VVG*D+KKYISV LPVS*ICF*VTG LY
Subject  16035  KATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGALY  16283

Range 11: 4649 to 5356 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
521.6 bits(1132) 0.0 223/236(94%) 0/236(0%) Minus/Plus
Query      628  G*GETGKSRTAQAEESDDQRR*GR*TALYV*DVFLRCAAGCVQRSDYRHQVLKRIYLCR*LEREECGLFLKAG*GVYL*WW*PCFIRVASCPRGYLNGN*VPKRL*PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFGRLFSYALRFSKDALAFSKLYRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT  1335
                G* +TG SR AQ EE DDQ R GR*TAL+V*+VFLRCAAGCVQRSDYRHQVLKRIYLCR*LEREECGLFLKAG*GVYL*WW*PCFIRVASCPRGYLNGN*VPKRL PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG LFSYALRFSKDALAFSKL+RRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT
Subject   4649  G*EKTGTSRAAQTEEFDDQ*RQGR*TALHV*NVFLRCAAGCVQRSDYRHQVLKRIYLCR*LEREECGLFLKAG*GVYL*WW*PCFIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT  5356

Range 12: 5408 to 5650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 81/81(100%) 0/81(0%) Minus/Plus
Query      334  EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC  576
                EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC
Subject   5408  EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC  5650

Range 13: 16034 to 16282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 79/83(95%) 0/83(0%) Minus/Plus
Query        3  DTTCRLPRNIFRRRAGRH*YIF*RLNQQQSKGKVVS**RP*RVVWDIG*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MKLL  251
                DTT RLPRNIFRRRAG H*YIF* LNQQQSKGKVVS**RP*RVVWDI *FEVGREQQGEI*GERHTRYLRFIV*LSRV*MKLL
Subject  16034  DTTRRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MKLL  16282

Range 14: 5702 to 5731 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 10/10(100%) 0/10(0%) Minus/Plus
Query      253  QVGHRSHFSF  282
                QVGHRSHFSF
Subject   5702  QVGHRSHFSF  5731

Range 15: 5095 to 5730 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
477.1 bits(1035) 0.0 209/212(99%) 0/212(0%) Plus/Minus
Query      254  NEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV*EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR*SLLNASASFENRKA*ENSRPKLRL*P*PYHPSCT  889
                NEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR SLLNASASFENRKA*ENS PKLRL*P*PYHPSCT
Subject   5095  NEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT  5730

Range 16: 4645 to 5049 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
301.2 bits(651) 0.0 122/135(90%) 0/135(0%) Plus/Minus
Query      935  GYLMDSTPRHQRGMVRLHPSCTSALNNGQRRLGT*LPLRYPLGHEATLMKHGYHHYRYTPHPALRKRPHSSLSSYRQR*MRLRTWWR*SLRCTHPAAHRRNTS*TYKAVYRPYLR*SSDSSAWAVRLLPVSPQPN  1339
                GYLMDSTPRHQRGMVRLHPSCTSALN+G+RRLGT*LPLRYPLGHEATLMKHGYHHYRYTPHPALRKRPHSSLSSYRQR*MRLRTWWR*SLRCTHPAAHRRNT *T KAVYRP L *SS+SS WA RL+PV  QP+
Subject   4645  GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMKHGYHHYRYTPHPALRKRPHSSLSSYRQR*MRLRTWWR*SLRCTHPAAHRRNTF*TCKAVYRPCLH*SSNSSVWAARLVPVFSQPH  5049

Range 17: 16027 to 16101 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 22/25(88%) 0/25(0%) Plus/Minus
Query      184  QKIYQCLPARLLNMFLGNRHVVSE*  258
                QKIYQC PARLLNMFLGNR VVS *
Subject  16027  QKIYQCQPARLLNMFLGNRRVVSR*  16101

Range 18: 16235 to 16282 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 16/16(100%) 0/16(0%) Plus/Minus
Query        3  KQLHLNPG*SDDKT*V  50
                KQLHLNPG*SDDKT*V
Subject  16235  KQLHLNPG*SDDKT*V  16282

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 8

Range 1: 5801 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.6 bits(414) 0.0 80/159(50%) 0/159(0%) Minus/Plus
Query      747  QLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRAT  1223
                +L++     +   ++  F F + L GR AVFFS+ G  Y+YNGGSH S GWP VL++I+    Y   FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F  +C+         VAS D F+M  GFQR + H+V S  EGRISLTFR+T
Subject   5801  KLEIVRVEGLTDAYAGGFIFHERLPGRVAVFFSRNGAPYSYNGGSHPSRGWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST  6277

Range 2: 6434 to 6793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 62/120(52%) 0/120(0%) Minus/Plus
Query      255  KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFH  614
                K  SE + R  +  STY++W EQD+V KC+WL+AD+P++AL+P    M FE V T T+EDA +EYLKY AIGIER Y A +    IAV  A+GVLK P Q YE LPG   YK   + ++H
Subject   6434  KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYH  6793

Range 3: 16926 to 17162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 27/79(34%) 0/79(0%) Minus/Plus
Query       11  QRAGYLETYLGDGQADTDIFFDVLTNNRAKVRWLVNKDHSAWCGILDDLKWEESSKEKFKGRDILDTYVLSSDYPGFK*  247
                +R  YL  Y   G +   I   V+ ++   V  +++ +H  W G+  DL WE++     KG+D+LD  +L  +YPGFK*
Subject  16926  KRVTYLCEYDSLGGSVETITVKVVKDDGTIVDVVIDNNHKCWAGLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK*  17162

Range 4: 6001 to 6276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.0 bits(190) 0.0 48/92(52%) 0/92(0%) Plus/Minus
Query      748  VALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSK  1023
                V LNVKL+ PS  E T C  +L*KP  I   S EAT         LH + K A P   TV IGLS G*H S SAWN   PP  Y  TKQWSK
Subject   6001  VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK  6276

Range 5: 6496 to 6768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.1 bits(186) 0.0 49/91(54%) 0/91(0%) Plus/Minus
Query      280  L*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCS  552
                L*  KPG+ S*   G F TP A +TAI L   NALY LS+PIA YF+YS  ASS V V T S  I    G RA  G SA + SH +T SCS
Subject   6496  L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCS  6768

Range 6: 5854 to 5973 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 22/40(55%) 0/40(0%) Plus/Minus
Query     1051  ISSRTRGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKV  1170
                ISS T G P E WLPPL  Y +P  EK TA LP   S K+
Subject   5854  ISSSTCGQPLEGWLPPLYEYGAPFLEKNTATLPGNRS*KI  5973

Range 7: 5852 to 6277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
68.0 bits(142) 0.0 48/142(34%) 0/142(0%) Plus/Minus
Query      747  SCPERQTDAPFVDRVY*MQVRPLKTARHKKIVARSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGK  1172
                S PE QTD+      + M V PLK   H K + RS+       T+  L  E+C+   + R   V+  +A  +ISVE Y +T+ +LL+  MV+   V     D++*   P  * +AT+I+ I  +   EK   PP Q + K K
Subject   5852  SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV*HMWPTP*RVATSIV*IRCSIPREKHCNPPRQSLVKDK  6277

Range 8: 6446 to 6829 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 41/128(32%) 0/128(0%) Plus/Minus
Query      219  KYVSR*PARCIRMKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSL  602
                +Y+++  A   R+ N +   LV+ +AR   ++L R  Q+TF  S GN++   +R V PLN    +LQVL   I   P  +  K H      KS + IIS +P+ L + +L  P  +   P   P   L
Subject   6446  RYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL  6829

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 5

Range 1: 5276 to 5716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.4 bits(370) 0.0 66/147(45%) 0/147(0%) Minus/Plus
Query      753  ATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  1193
                A +  ++  FVD L+GR   F+SK    Y YNGGSH S GW + L+++   +K    +DHCL+QKY+ G  + FHADDE+CY S   ++TVNL G+A F ++  K G+++   +  GD F+M  G QR   HSV S+DEGR+S+T R
Subject   5276  ARKLVSSDIFVDKLRGRDVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR  5716

Range 2: 5867 to 6157 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 22/97(23%) 0/97(0%) Minus/Plus
Query      333  SGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV  623
                S     S  + R+   +ST     E   + K  W+  ++PV+ ++     +  + +KT  +E   +E++ YLA      +  L  AR++   T + V
Subject   5867  SSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV  6157

Range 3: 6164 to 6232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 10/23(43%) 0/23(0%) Minus/Plus
Query      261  KVPNQVYESLPGFHVYKSGTDLI  329
                K P  VYE+LPG  VY +   ++
Subject   6164  KFPLAVYENLPGLRVYDANFKVV  6232

Range 4: 5359 to 5649 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 35/97(36%) 0/97(0%) Plus/Minus
Query      820  PQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDETWLPPL*VY  1110
                P  I K SP     +   P       K A P + TV     D *H SSSA N    P LYFC KQ S       + + SS     P     PPL* Y
Subject   5359  PGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ*S*LSSNFSSSRSSSSALFQP*LACEPPL*TY  5649

Range 5: 5301 to 5375 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 9/25(36%) 0/25(0%) Plus/Minus
Query     1094  HHYRYTPHPALRKRPHSSLSSYRQR  1168
                HHYR+T      +  H S ++YR++
Subject   5301  HHYRHTFGCTCCRMLHLSPATYRRK  5375

Grapevine virus F, complete genome

Sequence ID: Length: 7551 Number of Matches: 3

Range 1: 1894 to 2325 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.6 bits(331) 0.0 64/144(44%) 0/144(0%) Minus/Plus
Query      753  FSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR  1184
                F     ++D LKGR   F+SK   GYTY GGSH+S G P  L ++  ++     +DHCLVQKY+  G +PFHADDE+CY   + ++T+N+ G A F +K     +V  + +  GD  +MP G Q  + HSV    EGRISLTFR
Subject   1894  FLKQVKYLDKLKGRVCAFYSKYSTGYTYTGGSHISQGMPESLVELRRSMGLGEEYDHCLVQKYEKDGAIPFHADDEKCYLPGSCVVTLNMHGTAEFMLKENGKEEVHRVTLEDGDVLVMPEGVQENYKHSVLVKSEGRISLTFR  2325

Range 2: 1893 to 2129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 34/79(43%) 0/79(0%) Plus/Minus
Query      949  *HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFEN  1185
                *H SSSA  G  P   YF T+QWS +    I ++ S+R  G P E   PP+ VYP   FE K   LP  LS  +  F N
Subject   1893  *HFSSSA*KGMAPSFSYF*TRQWSYSSPNPIDLRNSTRDSGIPWEICEPPVYVYPVEYFE*KAQTLPLSLSRYLTCFRN  2129

Range 3: 2226 to 2324 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 16/33(48%) 0/33(0%) Plus/Minus
Query      754  LNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEA  852
                LNV+L+RPS +  TEC    * P GI + SP +
Subject   2226  LNVRLIRPSDLTSTECL*FS*TPSGITRTSPSS  2324

Senna mosaic virus isolate Brazilian, complete genome

Sequence ID: Length: 6775 Number of Matches: 6

Range 1: 1879 to 2025 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 26/49(53%) 0/49(0%) Minus/Plus
Query      876  FDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKG  1022
                F+ CLVQKY+ G  +PFH D+E CYP  + +LT+NL G+A FS+ C+ G
Subject   1879  FNQCLVQKYERGASIPFHRDNEPCYPKGHQVLTINLEGQAEFSVSCKSG  2025

Range 2: 1732 to 1854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 23/41(56%) 0/41(0%) Minus/Plus
Query     1038  DNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAI  1160
                D LKGR A FFSK  + Y+Y GGSH S GWP  L+ IL  +
Subject   1732  DRLKGRLAYFFSKDNKPYSYTGGSHASRGWPNWLDSILATV  1854

Range 3: 2050 to 2151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 20/34(59%) 0/34(0%) Minus/Plus
Query      744  GDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATR  845
                G YFL P GFQ +H H+V S+   RISLTFR T+
Subject   2050  GTYFLSPPGFQESHQHAVKSLSASRISLTFRCTQ  2151

Range 4: 1879 to 2016 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 16/46(35%) 0/46(0%) Plus/Minus
Query      885  ALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVK  1022
                A +R+ CL  E+  +  +  W+A L++ ++WYA +  + LH* +VK
Subject   1879  ARHRKFCLTLEVYGEHLMALWVAWLIVPMKWYARSPFIFLH*ALVK  2016

Range 5: 1731 to 1844 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 19/38(50%) 0/38(0%) Plus/Minus
Query     1048  KISSRTRGHPDETWLPPL*VYPSPSFEKKTALLPFKLS  1161
                +I S   G P E W PP+* Y   S EKK A LPF+ S
Subject   1731  RIESSQFGQPREAWEPPV*EYGLLSLEKK*ASLPFRRS  1844

Range 6: 2049 to 2147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 14/33(42%) 0/33(0%) Plus/Minus
Query      748  VALNVKLMRPSSIEFTECKCVL*KPQGIRK*SP  846
                V LNV  +  +   FT C C  * P G RK  P
Subject   2049  VHLNVSEILDALKLFTACWCDS*NPGGERKYVP  2147

Nucleotide Sequence (982 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
99
198
297
396
495
594
693
792
891
982

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
762.6 4369.3 32% 0 98% NC_004667
193.5 193.5 33% 2.612e-48 30% NC_022072
51.0 51.0 7% 2.064e-05 37% NC_016417
50.1 50.1 7% 3.895e-05 36% NC_016081
48.7 48.7 7% 0.000101 36% NC_016416

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 12160 to 13140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
762.6 bits(1658) 0.0 323/327(99%) 0/327(0%) Plus/Plus
Query        2  VSVQVGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  982
                VSVQVGKYVDVTQNLESTIVPL+VMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYD+RVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKP VPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKG+VEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE
Subject  12160  VSVQVGKYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPCVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  13140

Range 2: 12160 to 13140 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
753.4 bits(1638) 0.0 322/327(98%) 0/327(0%) Minus/Minus
Query        2  FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RTVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDFSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRHIRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY*QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNF*RHDRTF*ILRYVHILPYLNRH  982
                FVRLDIVYNASVICGVDRISHLRSYTISRVIR*R VYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLD SLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRH RF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHN *RHDRTF*ILRYVHILPYLNRH
Subject  12160  FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRHTRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPYQQIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPYLNRH  13140

Range 3: 12161 to 13138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
726.9 bits(1580) 0.0 322/326(99%) 0/326(0%) Minus/Minus
Query        3  RSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTYRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLCRRKNLLVVSVLADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNFALRPHTSLPEPT  980
                RSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLT RLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLL RRKNLLVVSV ADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLN ALRPHTSLPEPT
Subject  12161  RSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEPT  13138

Range 4: 12159 to 13139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
708.1 bits(1539) 0.0 323/327(99%) 0/327(0%) Minus/Minus
Query        1  SFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTFPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNLEK*DESS*KGSNDSIGTYGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITFNGTIVLSKFCVTSTYFPT*TDT  981
                SFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFST PFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNLEK*DESS*KGSNDSIGT+GFKSLIPPGVSLLKNNLMTSLSVAITSYTQATL S*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISIT NGTIVLSKFCVTSTYFPT*TDT
Subject  12159  SFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNLEK*DESS*KGSNDSIGTHGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYFPT*TDT  13139

Range 5: 12161 to 13054 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
674.2 bits(1465) 0.0 292/298(98%) 0/298(0%) Plus/Plus
Query        3  CRFR*GSMWT*RKI*KVRSCR*KLWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC*YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRMCL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REKSRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TVR*RMT  896
                CRFR*GSMWT*R+I*KVRSCR*+LWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NR+CL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*RE+SRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*T R*RMT
Subject  12161  CRFR*GSMWT*RRI*KVRSCR*ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRVCL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REESRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TGR*RMT  13054

Range 6: 13091 to 13138 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 16/16(100%) 0/16(0%) Plus/Plus
Query      933  STPQITLALYTISRRT  980
                STPQITLALYTISRRT
Subject  13091  STPQITLALYTISRRT  13138

Range 7: 12162 to 12659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
372.2 bits(806) 0.0 163/166(98%) 0/166(0%) Plus/Plus
Query        4  VGSGREVCGRNAKFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISASTETTSKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKL  501
                VGSGREVCGRNA+FRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISA TETTSKFFLR KSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKL
Subject  12162  VGSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKL  12659

Range 8: 12708 to 13139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
333.7 bits(722) 0.0 143/144(99%) 0/144(0%) Plus/Plus
Query      550  EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRYVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDER  981
                EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRR VSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDER
Subject  12708  EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDER  13139

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 13115 to 14095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
193.5 bits(416) 0.0 97/327(30%) 0/327(0%) Plus/Plus
Query        2  VSVQVGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  982
                +SV +GK   ++    + +VPL  + ++KR        P VV +++  Y ++ + L D+    R   +  Y  + +A++  +  +     ++   +   L+R +P N +YD RVAW   V + L   I   F +     +   +P+VP+E  D  HE +SYFSR++      K   + PE+    +  +++EN  +      A  II++YYSIYGTNA RI RRP  L V ++ +   + L  VE       +   IN  R L R Y+ LT   R  + I RNNW+TL  +DG +A+DT + +   +       D+   + +IK+NE
Subject  13115  LSVYLGKATGLSDLGPNLVVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGRVVSVSVTSARPFVPLEGTDQLHESNSYFSRVALTQGRSKQSSVVPELMMSAIDAVLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNE  14095

Grapevine leafroll-associated virus 6, complete genome

Sequence ID: Length: 13807 Number of Matches: 1

Range 1: 11578 to 11778 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 25/67(37%) 0/67(0%) Plus/Plus
Query      539  EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED  739
                E+  KLV  L+ +N  L +T   A++++L  Y  Y TNA R    P  L+  IK +V+KV   GV++
Subject  11578  ELTRKLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE  11778

Grapevine leafroll-associated virus 5, complete genome

Sequence ID: Length: 13384 Number of Matches: 1

Range 1: 11141 to 11341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 24/67(36%) 0/67(0%) Plus/Plus
Query      539  EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED  739
                E+  KLV  L+  N  + +T   A++I+L  Y  Y TNA R    P  L+  IK +V++V   GV++
Subject  11141  ELTRKLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE  11341

Grapevine leafroll-associated virus 4, complete genome

Sequence ID: Length: 13830 Number of Matches: 1

Range 1: 11588 to 11788 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 24/67(36%) 0/67(0%) Plus/Plus
Query      539  EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED  739
                E+  KLV  L+ +N  L ++   A++++L  Y  Y TNA R    P  L+  IKG V  V   GV++
Subject  11588  ELTRKLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN  11788

Nucleotide Sequence (331 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
331

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
250.8 1231.3 39% 3.418e-66 79% NC_004667
155.9 230.3 39% 1.22e-37 44% NC_022072
102.3 102.3 32% 1.677e-21 38% NC_016509
83.5 83.5 31% 7.584e-16 38% NC_010178
107.4 169.1 26% 5.097e-23 40% NC_029783

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 7

Range 1: 1869 to 2189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.8 bits(541) 0.0 103/107(96%) 0/107(0%) Minus/Plus
Query        1  SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  321
                SVSYCSRESQNCDSRADAG+M DVYDISPQQVAEAMDKKGAL FD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS
Subject   1869  SVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  2189

Range 2: 1868 to 2188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.5 bits(488) 0.0 100/107(93%) 0/107(0%) Plus/Minus
Query        2  EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNSNAPFLSIASATCCGDISYTSSI*PASALESQFCDSRLQ*DTD  322
                EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S ++APFLSIASATCCGDISYTS+I PASALESQFCDSRLQ*DTD
Subject   1868  EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTD  2188

Range 3: 1869 to 2186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.8 bits(456) 0.0 88/106(83%) 0/106(0%) Plus/Minus
Query        4  SAYVRKGEEPAYVREGMFIHLTTLTNIVGQVISFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEFQRTLLIHSLCHLLRGYIVHILHITRVSSGIAILRFSTTVRYR  321
                SAY+RKGE+PAYVREGMFIHLTTLTNIVGQVI+FPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVHI H TR+ S IA+LRFSTTVR+R
Subject   1869  SAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVHIHHKTRIGSRIAVLRFSTTVRHR  2186

Range 4: 1861 to 2187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.0 bits(452) 0.0 90/109(83%) 0/109(0%) Minus/Plus
Query        3  LDCLYLTVVENRRIAIPELTRVIWRMCTIYPRSRWQRLWIRRVRWNSI*LLCSPWSCCMVTAKFTWRNSIR**RGKEITWPTMLVSVVRCMNIPSLT*AGSSPFLTYAL  329
                L  L LTVVENRR AI E  RV+W MCTIYPRSR QRLWIRRVRW S *LLCSPWSCC VT KFTW+NSIR *RGK ITWPTMLVSVVRCMNIPSLT*AG SPFL YAL
Subject   1861  LQSLCLTVVENRRTAILEPMRVLWWMCTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYAL  2187

Range 5: 1868 to 2188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
170.1 bits(365) 0.0 90/107(84%) 0/107(0%) Minus/Plus
Query        2  VCILL*SRIAELRFQS*RGLYGGCVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGRRLPGLQCWSVW*DV*TFLL*RKRVLHLFLRTHF  322
                VC+LL*SRIAELRF S  G YGGCVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR LPGLQCWSVW*DV*TFLL*RKRV HLFL THF
Subject   1868  VCVLL*SRIAELRF*SRCGFYGGCVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHF  2188

Range 6: 1999 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.2 bits(208) 0.0 40/47(85%) 0/47(0%) Plus/Minus
Query       51  NVHTSHHTDQHCRPGNLLPSSLTYRVPPSKLRRYHTTAPRGT*ELNR  191
                NVHTSHHTDQHCRPGN LPSS TYRV PSKL RY TT PRGT*EL R
Subject   1999  NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCR  2139

Range 7: 1861 to 1959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 26/33(79%) 0/33(0%) Plus/Minus
Query      231  AAGIYRTHPPYNPRQLWNRNSAILDYSKIQTIK  329
                AAGIYRTHPP NP +L NR+SAILDYSK QT+K
Subject   1861  AAGIYRTHPP*NPHRL*NRSSAILDYSKTQTLK  1959

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 2588 to 2905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 63/106(59%) 0/106(0%) Minus/Plus
Query        4  SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRT  321
                S+SYCS  SQ C  R + GYM DVYD+   ++AEA+D KG + FDL  M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T +Y RT
Subject   2588  SISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRT  2905

Range 2: 2587 to 2871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 42/95(44%) 0/95(0%) Plus/Minus
Query       38  TLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNSNAPFLSIASATCCGDISYTSSI*PASALESQFCDSRLQ*DTD  322
                T E  C Y SP  PT     SP+  T VS+SSK TSPLP +SSTG+++ KS    PF S ASA      S TS++ P S L    C+   Q*+ +
Subject   2587  TRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASANSSNPRS*TSTMYPPSHLTEHSCEGVEQ*EME  2871

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 2447 to 2761 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 40/105(38%) 0/105(0%) Minus/Plus
Query        7  SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVR  321
                +++YC  +++ CD +A  G+M DVYD+   ++A+A++KK    F+L LMFP+EL   +G + + EL   V R+GD + Y VG  G+ Y HS   +  FF  + V+
Subject   2447  NITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQ  2761

Pineapple mealybug wilt-associated virus 1, complete genome

Sequence ID: Length: 13071 Number of Matches: 1

Range 1: 2379 to 2690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 39/104(38%) 0/104(0%) Minus/Plus
Query       10  SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYV  321
                ++S C+    NC  R+    M DVYDI  +Q+ +AM+ KGA+   L  MFP E+L G   V   E    V +EG  L Y +G+ G+ Y HS   +  + T S V
Subject   2379  NLSVCNASVPNCKHRSSVITMVDVYDIHVEQLLQAMEVKGAVLARLFFMFPPEILAGAESVQYPETSLTVSKEGRDLVYFIGETGDSYVHSLDTLPSYITRSVV  2690

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 3

Range 1: 2985 to 3284 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 40/100(40%) 0/100(0%) Minus/Plus
Query       22  SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT  321
                + ++C ++++ C  + +AG+M DVYD+S  +VA ++  KG   FD+  M PVEL+  +G   ++EL+T+V R+GD L Y+VG  G+ Y+HSF  V    T
Subject   2985  TATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLT  3284

Range 2: 2996 to 3145 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 20/50(40%) 0/50(0%) Plus/Minus
Query      161  SSTGNIRAKSNSNAPFLSIASATCCGDISYTSSI*PASALESQFCDSRLQ  310
                SSTG+I+  S    P ++   AT     SYTS+I PAS    Q   S +Q
Subject   2996  SSTGSIKTMSKVLTPLIAKLRATSYELRSYTSTINPASHFLVQHLVSFMQ  3145

Range 3: 3176 to 3286 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 17/37(46%) 0/37(0%) Plus/Minus
Query       20  KVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSS  130
                +V+   T  KEC Y SP  PTL*   SP   T V +S
Subject   3176  QVRREKTF*KECWYESPVPPTL*VSRSPLRVTTVFNS  3286

Nucleotide Sequence (372 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
372

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
297.5 1439.5 29% 3.468e-80 69% NC_004667
190.8 268.4 36% 4.838e-48 43% NC_022072
134.9 182.2 47% 3.256e-31 45% NC_016509
119.3 119.3 33% 1.594e-26 41% NC_029783
79.4 79.4 33% 1.595e-14 31% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 2091 to 2462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
297.5 bits(643) 0.0 122/124(98%) 0/124(0%) Plus/Plus
Query        1  DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA  372
                DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVT RSLVP+FVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA
Subject   2091  DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA  2462

Range 2: 2093 to 2461 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
262.7 bits(567) 0.0 117/123(95%) 0/123(0%) Minus/Minus
Query        3  AYSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*  371
                AYSNVLFSNVP+VLSA*E*ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL VTSVPGDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*
Subject   2093  AYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*  2461

Range 3: 2091 to 2462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
241.2 bits(520) 0.0 102/124(82%) 0/124(0%) Minus/Minus
Query        1  GVLECSILKRPYGVERVGIDPVDKIRIEDYRLEGHTRTSYNRYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLILKLKHVPG*SAYVRKGEEPAYVREGMFIHLTTLTNIVGQVI  372
                G+L+ SIL+ PY VERVGIDPVDK+RIEDY L+GHTRTSYNRY+HQRFAHERRDQ P R+L SR*LL PTHS+MMV  TVSLIL LKHVPG SAY+RKGE+PAYVREGMFIHLTTLTNIVGQVI
Subject   2091  GILKRSILECPYSVERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVI  2462

Range 4: 2093 to 2452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.6 bits(510) 0.0 99/120(82%) 0/120(0%) Plus/Plus
Query        3  LPGLQCWSVW*DV*TFLL*RKRVLHLFLRTHFIRERV*A*V*GIPLRLPSSYYV*GTEVTWNRGHA*VIGPDVRGQIVGVYTCCSWF*CVLQDDSPRFGFCRQDLFLRAQHHRDV*E*NI  362
                LPGLQCWSVW*DV*TFLL*RKRV HLFL THF+RERV*A V*GIPL LPSS+YV*G+EVTWN G+ *V+GP VRGQI GV+TCCSWF*CVL D+SPRFG CRQDLFLRAQH+RD+ E*N+
Subject   2093  LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQHYRDIRE*NV  2452

Range 5: 2200 to 2457 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.9 bits(347) 0.0 70/86(81%) 0/86(0%) Minus/Minus
Query      110  TRMFYSQTSLWC*ARRNRSCRQNPNRGLSS*RTH*NQLQQV*TPTICPRTSGPMTYA*PRFQVTSVPYT**DDGSRNGIPHTQA*T  367
                T+ FYS+ SL C*ARRNRSCRQ+PNRGL S*RTH*NQLQQV*TP ICPRT+GP TY *P+FQVTS PYT**DDG+ NGIPHT A*T
Subject   2200  TQTFYSRMSL*C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T  2457

Range 6: 2092 to 2139 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 16/16(100%) 0/16(0%) Minus/Minus
Query        2  NVHTSHHTDQHCRPGN  49
                NVHTSHHTDQHCRPGN
Subject   2092  NVHTSHHTDQHCRPGN  2139

Range 7: 2092 to 2364 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
167.9 bits(360) 0.0 78/91(86%) 0/91(0%) Plus/Plus
Query        2  ITWPTMLVSVVRCMNIPSLT*AGSSPFLTYALHPGTCLSLSMRDTVAATIILLCVGHRSHLEPRSRVGHWSRRSWANRWCXXXXXXXXXCP  274
                ITWPTMLVSVVRCMNIPSLT*AG SPFL YAL PGTCLS SMRDTV  TII LCVG RSHLE R R+G WSRRSWANRWC YLL*LVLVCP
Subject   2092  ITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCP  2364

Range 8: 2410 to 2457 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 11/16(69%) 0/16(0%) Plus/Plus
Query      320  PTRSTP*GRLRIEHSS  367
                PTRST *G  RIE  S
Subject   2410  PTRSTL*GHSRIERLS  2457

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 2810 to 3181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.8 bits(410) 0.0 76/124(61%) 0/124(0%) Plus/Plus
Query        1  DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA  372
                D L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK    EVTRR +V +F  K++V IPV+ G+ +SFK++VLD+DFVDR+YSYALNT+  FE RTFEYA
Subject   2810  DKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYA  3181

Range 2: 2827 to 3180 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 51/118(43%) 0/118(0%) Minus/Minus
Query       18  AYSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PT  371
                AYSNV  S +  V  A E   STKS S T  LKD   P+ TGI T     N  T    VTS+   F     V+ W*P   PSYS+L T PD V     V+   T E  C Y SP  PT
Subject   2827  AYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPT  3180

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 2

Range 1: 2669 to 3040 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 56/124(45%) 0/124(0%) Plus/Plus
Query        1  DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA  372
                D + Y VG  G+ Y HS   +  FF  + V+  SG+ F +EY GYR GYH  ++C    +  +    R +  TF G SLV IP +A   +SF+ + LDSDFVDR+YSY LNT   F +RTFEYA
Subject   2669  DVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYA  3040

Range 2: 2884 to 3039 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 26/52(50%) 0/52(0%) Minus/Minus
Query      216  AYSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNV  371
                AYSNVL +N  +VLS  E   STKSES+ I L +    A +GI T   P NV
Subject   2884  AYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNV  3039

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 3207 to 3578 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 51/124(41%) 0/124(0%) Plus/Plus
Query        1  DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA  372
                D L Y+VG  G+ Y+HSF  V    T   V  S    +  EY GYRCGYHH+ M             R +  T  GK++V  P      + FK I +D++FV R+Y+YALN   TF  RTFEYA
Subject   3207  DLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYA  3578

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 1308 to 1670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 38/121(31%) 0/121(0%) Plus/Plus
Query        7  LAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEY  369
                + Y +G  G+ Y H    +  + T + V ++ G  + + YEG R GY +  + R+  S  T  T R    +  G     +PV        K + LD DFV+R+ SY LN       RTFEY
Subject   1308  VTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSYLLNVAAGVNERTFEY  1670

Nucleotide Sequence (364 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
364

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
238.9 1171.3 32% 1.549e-62 70% NC_004667
152.3 219.8 37% 1.818e-36 40% NC_022072
93.2 93.2 33% 1.13e-18 36% NC_029783
104.6 104.6 33% 4.025e-22 41% NC_016509
57.4 57.4 33% 6.487e-08 25% NC_005065

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 7

Range 1: 2057 to 2416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
238.9 bits(515) 0.0 106/120(88%) 0/120(0%) Plus/Minus
Query        3  A*EKILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLHVTSDQGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKMKNPLTLEKECSYIPPH*PTS*ARRSPSLFTNISTSS  362
                A*E ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL+VTS  GDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EK+KNPLTLEKECSYI PH*PT *AR SPSLFTN+S+SS
Subject   2057  A*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSS  2416

Range 2: 2055 to 2417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.0 bits(500) 0.0 108/121(89%) 0/121(0%) Minus/Plus
Query        2  LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSYA  364
                LEE+D LVKREGD LAY VGQCG MYEHSFS+VSGFF FSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSP +EVT RSLVP+FVGKSLVF+PVVAGSSVSFKTIVLDSDFVDRI+SYA
Subject   2055  LEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYA  2417

Range 3: 2055 to 2417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
213.7 bits(460) 0.0 88/121(73%) 0/121(0%) Plus/Minus
Query        2  RVGEDPVDKIRIEDYRLEGHTRTSYNRHKHQRFAHERRDQ*PTRDLGPRRLLRPTHSKMMVAATVSLVLKLKHVPG*SAHVRKDEEPAHAREGMLIHPTTLTNLIGQEITFPLHQHINFLQ  364
                RVG DPVDK+RIEDY L+GHTRTSYNR++HQRFAHERRDQ P R+L  R LL PTHS+MMV  TVSL+L LKHVPG SA++RK E+PA+ REGM IH TTLTN++GQ ITFPLHQ I F Q
Subject   2055  RVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQ  2417

Range 4: 2057 to 2416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 88/120(73%) 0/120(0%) Minus/Plus
Query        3  GGS*YVGEEGR*SPGL*GWSVWWDV*AFLL*RERVLHLFLRAHFIRERV*A*VRGIPLRLPSSYYV*GAEVSLVRGHV*VIGPDVRGQIVGVYACCSWF*CVLQDDSPRFGFCRQDLLLR  362
                G + YVGEEGR* PGL  WSVW DV* FLL*R+RV HLFL  HF+RERV*A V GIPL LPSS+YV*G+EV+   G+V*V+GP VRGQI GV+ CCSWF*CVL D+SPRFG CRQDL LR
Subject   2057  GRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLR  2416

Range 5: 2056 to 2328 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 64/91(70%) 0/91(0%) Minus/Plus
Query       91  WRKLICW*RGKVISWPMRLVSVVGCMSIPSLA*AGSSSFLTCALHPGTCLSLSTRDTVAATIILLCVGRRSLLGPRSRVGHWSRRSWANRW  363
                W+  I W*RGKVI+WP  LVSVV CM+IPSL *AG S FL  AL PGTCLS S RDTV  TII LCVG RS L  R R+G WSRRSWANRW
Subject   2056  WKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRW  2328

Range 6: 2200 to 2379 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 46/60(77%) 0/60(0%) Plus/Minus
Query       40  GLSS*RTH*NQLQQA*TPTICPRTSGPMTYT*PRTKETSAPYT**DDGSRNGIPRTQA*T  219
                GL S*RTH*NQLQQ *TP ICPRT+GP TYT*P+ + TS PYT**DDG+ NGIP T A*T
Subject   2200  GLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T  2379

Range 7: 2056 to 2115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 14/20(70%) 0/20(0%) Plus/Minus
Query      304  DQPHRPGDHLPSSPTYQLPP  363
                DQ  RPG+HLPSSPTY++ P
Subject   2056  DQHCRPGNHLPSSPTYRVLP  2115

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 2

Range 1: 2774 to 3136 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.3 bits(326) 0.0 67/121(55%) 0/121(0%) Minus/Plus
Query        2  LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSYA  364
                LEE+D  V+R GD L Y VG CG  Y H FS VS +   +Y RT SG V+K+EYEGYR GYHHLT+ R+QK    EVT R +V +F  K++V +PV+ G+ +SFK++VLD+DFVDR++SYA
Subject   2774  LEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYA  3136

Range 2: 2776 to 3117 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.5 bits(141) 0.0 46/114(40%) 0/114(0%) Plus/Minus
Query       21  STKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLHVTSDQGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKMKNPLTLEKECSYIPPH*PTS*ARRSPSLFTNISTSS  362
                STKS S T  LKD   P+ TGI T     N  T    VTS    F     V+ W*P   PSYS+L T PD V     ++   T E  C Y  P  PT     SP+  T +S SS
Subject   2776  STKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPTEYINLSPARLTLVSNSS  3117

Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177

Sequence ID: Length: 17608 Number of Matches: 1

Range 1: 3171 to 3533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 44/121(36%) 0/121(0%) Minus/Plus
Query        2  LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSYA  364
                ++E++ +V R+GDLL Y VG  G  Y+HSF  V        V  S    +  EY GYRCGYHH+ M             R +  T  GK++V  P      + FK I +D++FV R+++YA
Subject   3171  IQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYA  3533

Grapevine leafroll-associated virus 1, complete genome

Sequence ID: Length: 18659 Number of Matches: 1

Range 1: 2633 to 2992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 49/120(41%) 0/120(0%) Minus/Plus
Query        5  LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSY  364
                + E+ + V R+GD++ Y VG  G  Y HS   +  FF  + V+  SG+ F +EY GYR GYH  ++C    +  S    R +  TF G SLV +P +A   +SF+ + LDSDFVDR++SY
Subject   2633  IPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSY  2992

Little cherry virus 2, complete genome

Sequence ID: Length: 15045 Number of Matches: 1

Range 1: 1266 to 1625 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 30/120(25%) 0/120(0%) Minus/Plus
Query        5  LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSY  364
                ++ ++ +V+ +   + Y +G  G  Y H   ++  +   + V ++ G  + + YEG R GY +  + R+  S  +  T R    +  G     +PV        K + LD DFV+R+ SY
Subject   1266  IQSLNTVVRWDHSTVTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSY  1625

Nucleotide Sequence (2168 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
217
434
651
868
1085
1302
1519
1736
1953
2168

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
1403.2 8204.6 8% 0 75% NC_004667
83.5 83.5 5% 8.048e-15 34% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 30

Range 1: 15960 to 17918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1403.2 bits(3056) 0.0 635/653(97%) 0/653(0%) Plus/Minus
Query      176  T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNITYSTKTKNEQKD*LNYFIFLTFVYFKFIEESLPINSSQTFPFSTYAN*SI*IVTNKHTD*RYAYKYIPPITNVTSHDAIVYRYSDGFL*VPHRLLQQLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLKRTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQXXXXXXRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVSAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQXXXXXXXXXXXNFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DVKKYISVSLPVS*ICF*VTGTLYLADLVDIFTHLRKDIVNPETRSYIV  2134
                T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRN TYSTK K+EQKD* NYFIFLTFVYFKFIE  LPI    TF FSTYAN*SI*IVTNKHTD*RYAYKYIPP+TNVTSHDAIVYRYSDGF *VPHRLLQ+LTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNL+RTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLV AVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*D+KKYISVSLPVS*ICF*VTG LYLADLVDIFTHLRKDIVNPETRSYIV
Subject  15960  T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGALYLADLVDIFTHLRKDIVNPETRSYIV  17918

Range 2: 15958 to 17217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
901.4 bits(1961) 0.0 417/420(99%) 0/420(0%) Minus/Plus
Query      877  VTM*DRVSGFTISFRKCVKISTRSARYNVPVT*KHI*ETGRLTLIYFLTS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLXXXXXXXXXXTALTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN  2136
                VTM*DRVSGFTISFRKCVKISTRSARYN PVT*KHI*ETGRLTLIYFL S*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTA TNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN
Subject  15958  VTM*DRVSGFTISFRKCVKISTRSARYNAPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN  17217

Range 3: 16325 to 17419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
801.6 bits(1743) 0.0 359/365(98%) 0/365(0%) Minus/Plus
Query      675  TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEXXXXXXXXXXXXXTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNRFSSNFGIARMLLLTLCCGVL*KCYVVQPVSNFQTGYNYRYLFAH  1769
                TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLL+HSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGN+FS NFGIARMLLLTLCCG L*KCYVVQPVSNFQTGYNYRYLFAH
Subject  16325  TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAH  17419

Range 4: 16607 to 17629 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
670.1 bits(1456) 0.0 330/341(97%) 0/341(0%) Plus/Minus
Query      465  VPRPSPFLHMLIRAYK**LXXXXXXXXXXXXSHPSQTSLRTTQ*CIATLMGFSKCLIAFYNN*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*YSATKRQEQHPSDPEI*REPITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMFKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPXXXXXXXXXXXXXXXKCCHVIIVQGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII  1487
                V +PSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*C ATLMGFSKCLIAFY +*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL* SATKRQEQHPSDPEI RE ITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRM KQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQ+VKCCHVIIV+GGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII
Subject  16607  VVKPSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII  17629

Range 5: 16995 to 17645 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
495.5 bits(1075) 0.0 209/217(96%) 0/217(0%) Minus/Plus
Query      449  SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCLNIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVIGSLQISGSLGCCS*RFVAEYYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLGTINR*R  1099
                SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCL+IRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVI SLQISGSLGCCS*RFVAE+YKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVA+HYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGL T N *+
Subject  16995  SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVISSLQISGSLGCCS*RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLTTSNG*K  17645

Range 6: 16389 to 16928 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
392.8 bits(851) 0.0 178/180(99%) 0/180(0%) Minus/Plus
Query     1166  SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPCTIMT*QHFTF*LTRIIALMIRRAGQ  1705
                SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPP TIMT*QHFT *LTRIIALMIRRAGQ
Subject  16389  SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFTL*LTRIIALMIRRAGQ  16928

Range 7: 15957 to 16349 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
320.0 bits(692) 0.0 131/131(100%) 0/131(0%) Minus/Plus
Query     1745  SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y  2137
                SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y
Subject  15957  SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y  16349

Range 8: 17453 to 17917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
301.2 bits(651) 0.0 142/155(92%) 0/155(0%) Minus/Plus
Query      177  EGDEALRETHQSSDTLLRRAK*RL*WVGCIYRRNVNRYVY*LLFICSN*HM*KRGRSGNY**VKTLQ*I*NKQK*EK*NN*ASLFVRFSFL*NRLYFEVR*LNSTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR  641
                EGDEALR+THQSS TLLRRAK*RL* VGCIYRRNVNRYVY*LLFICSN*HM*KR R  N * VK LQ*I*NKQK*EK*NN*ASLFVR S L*NR YFEVR*LN TSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR
Subject  17453  EGDEALRKTHQSSGTLLRRAK*RL*RVGCIYRRNVNRYVY*LLFICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR  17917

Range 9: 16235 to 16570 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
256.7 bits(554) 0.0 112/112(100%) 0/112(0%) Plus/Minus
Query     1524  GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V  1859
                GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V
Subject  16235  GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V  16570

Range 10: 15959 to 16276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
226.0 bits(487) 0.0 104/106(98%) 0/106(0%) Minus/Plus
Query     1818  *RCRIEFQGLQYLFANV*RYQRDQRDTTCRLPRNIFRRRAG*H*YIF*RLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK  2135
                *RCRIEFQGLQYLFANV*RYQRDQRDTT RLPRNIFRRRAG*H*YIF* LNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK
Subject  15959  *RCRIEFQGLQYLFANV*RYQRDQRDTTRRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK  16276

Range 11: 17699 to 17917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.0 bits(345) 0.0 71/73(97%) 0/73(0%) Plus/Minus
Query      177  PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GRV*SSYLEI*PILQKRKTNKKT  395
                PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*G+V*SSYLEI PILQKRKTNKKT
Subject  17699  PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKT  17917

Range 12: 17697 to 17918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.3 bits(337) 0.0 73/74(99%) 0/74(0%) Minus/Plus
Query      176  LVFLFVFRFCRIGYISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG  397
                LVFLFVFRFCRIG+ISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG
Subject  17697  LVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG  17918

Range 13: 17443 to 17694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 73/84(87%) 0/84(0%) Minus/Plus
Query      400  SCCRRR*GT*RNPSE*RYTIASCEVTFVMGGMYL*A*R*SVCLLVTIYML*LAYVEKGKVWELLIGKDSSINLK*TKVRKMK*L  651
                S CRRR*GT*+NPSE*RYTIASCEVTFV GGMYL*A*R*SVCLLVTIYML*LAYVEK KV + ++GK+ SINLK*TKVRKMK*L
Subject  17443  SFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEKEKV*QPVMGKNPSINLK*TKVRKMK*L  17694

Range 14: 17743 to 17919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 59/59(100%) 0/59(0%) Minus/Plus
Query      175  RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V  351
                RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V
Subject  17743  RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V  17919

Range 15: 15950 to 16174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 74/75(99%) 0/75(0%) Plus/Minus
Query     1920  NIPHHALWSXXXXXXXXXXXXVKTSKNISVSACPSPKYVSR*PARCXXXXXXXXXHICEKIL*TLKLDPTSLLPI  2144
                NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEKIL*TLKLDPTSLL I
Subject  15950  NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEKIL*TLKLDPTSLLII  16174

Range 16: 17260 to 17391 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
96.4 bits(204) 0.0 43/44(98%) 0/44(0%) Minus/Plus
Query      703  NESSSQW**VLFKFRDR*DVALDALLRSTIKMLCCSASVKFSNG  834
                NESSSQW**VL KFRDR*DVALDALLRSTIKMLCCSASVKFSNG
Subject  17260  NESSSQW**VLSKFRDR*DVALDALLRSTIKMLCCSASVKFSNG  17391

Range 17: 17503 to 17919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.5 bits(632) 0.0 126/139(91%) 0/139(0%) Plus/Minus
Query      175  DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVEFSHLTSKYNLFYKNEKRTKRLA*LFHFSYFCLFQIY*RVFTY**FPDLPLFYIC*LEHINSN**TYRLTLRL*IHPTHHKRHFARR  591
                DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREV+FSHLTSK NLFYK+E+RTKRLA*LFHFSYFCLFQIY*R+FT+    +L LFYIC*LEHINSN**TYRLTLRL*IHPT HKRHFARR
Subject  17503  DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTHYWLLNLLLFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARR  17919

Range 18: 16657 to 16944 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
224.7 bits(484) 0.0 93/96(97%) 0/96(0%) Plus/Minus
Query     1150  CGSFIAAQRVVSSTLLYALIKM*SAVTSLLYKAERICTIINDRSMML*PRDEISKCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQ  1437
                CGSFIAAQRVVSSTLLYALIK+*SAVTSLLY+AERICTIINDRSMML*PRDEIS+CCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQ
Subject  16657  CGSFIAAQRVVSSTLLYALIKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQ  16944

Range 19: 16378 to 16602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 75/75(100%) 0/75(0%) Plus/Minus
Query     1492  IDFXXXXXXXXXXXXXIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL  1716
                IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL
Subject  16378  IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL  16602

Range 20: 16999 to 17217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.7 bits(279) 0.0 73/73(100%) 0/73(0%) Plus/Minus
Query      877  VSIMYLLVH*SXXXXXXXXXXXXXXHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLC  1095
                VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLC
Subject  16999  VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLC  17217

Range 21: 16165 to 16326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 54/54(100%) 0/54(0%) Plus/Minus
Query     1768  VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH  1929
                VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH
Subject  16165  VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH  16326

Range 22: 17257 to 17436 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 58/60(97%) 0/60(0%) Plus/Minus
Query      658  *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSTPQQSVKSNILAIPKFEENLLPLTR*FVR  837
                *HR*QTCANK*R*L*PV*KFDTG*TT*HFYS PQQSVKSNILAIPKF ENLLPLTR*FVR
Subject  17257  *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*FVR  17436

Range 23: 15949 to 16101 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 48/51(94%) 0/51(0%) Plus/Minus
Query     1993  QKIYQCQPARLLNMFLGNRHVVSR*SR*YLYTFAKRYCKP*NSILHRYYRS  2145
                QKIYQCQPARLLNMFLGNR VVSR*SR*YLYTFAKRYCKP*NSILHRY  S
Subject  15949  QKIYQCQPARLLNMFLGNRRVVSR*SR*YLYTFAKRYCKP*NSILHRYLSS  16101

Range 24: 17581 to 17763 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 46/61(75%) 0/61(0%) Minus/Minus
Query        2  KLGRLTSKYNLFYKNEKRTKRPA*LFHFSYFCLFQIY*RVFTY**FPDLPLFYIC*LEHIN  184
                K   LTSK NLFYK+E+RTKR A*LFHFSYFCLFQIY*R+FT+    +L LFYIC*LEHIN
Subject  17581  KFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTHYWLLNLLLFYIC*LEHIN  17763

Range 25: 17580 to 17756 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 46/59(78%) 0/59(0%) Minus/Minus
Query        1  VDLPRNITYSTKTKNEQKDQLNYFIFLTFVYFKFIEESLPISSSQTFPFSTYAN*SI*I  177
                V LPRN TYSTK K+EQKD  NYFIFLTFVYFKFIE  LPI+   TF FSTYAN*SI*I
Subject  17580  VILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*I  17756

Range 26: 17582 to 17770 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 48/63(76%) 0/63(0%) Plus/Plus
Query        3  FICSN*HM*KRGRSGNY**VKTLQ*I*NKQK*EK*NN*AGLFVRFSFL*NRLYFEVSRPNLLS  191
                FICSN*HM*KR R  N * VK LQ*I*NKQK*EK*NN*A LFVR S L*NR YFEV   N  S
Subject  17582  FICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTS  17770

Range 27: 17581 to 17694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 30/38(79%) 0/38(0%) Plus/Plus
Query        2  IYML*LAYVEKGKVWELLIGKDSSINLK*TKVRKMK*L  115
                IYML*LAYVEK KV + ++GK+ SINLK*TKVRKMK*L
Subject  17581  IYML*LAYVEKEKV*QPVMGKNPSINLK*TKVRKMK*L  17694

Range 28: 17697 to 17762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 19/22(86%) 0/22(0%) Plus/Plus
Query      118  LVFLFVFRFCRIGYISR*VDLT  183
                LVFLFVFRFCRIG+ISR* D T
Subject  17697  LVFLFVFRFCRIGFISR*DD*T  17762

Range 29: 17699 to 17755 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 17/19(89%) 0/19(0%) Minus/Minus
Query      120  STYLEI*PILQKRKTNKKT  176
                S+YLEI PILQKRKTNKKT
Subject  17699  SSYLEIKPILQKRKTNKKT  17755

Range 30: 17582 to 17632 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 14/17(82%) 0/17(0%) Minus/Minus
Query        3  VVPRPSPFLHMLIRAYK  53
                +V +PSPFLHMLIRAYK
Subject  17582  LVVKPSPFLHMLIRAYK  17632

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 16845 to 17162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.5 bits(176) 0.0 36/106(34%) 0/106(0%) Minus/Plus
Query     1820  SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*  2137
                + DV S FRVY++ + + + I +I+  +R  YL  Y   G +   I   V+ ++   V  +++ +H  W G+  DL WE++     KG+D+LD  +L  +YPGFK*
Subject  16845  ATDVASVFRVYDLHNYVVEKIGDIALYKRVTYLCEYDSLGGSVETITVKVVKDDGTIVDVVIDNNHKCWAGLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK*  17162

Nucleotide Sequence (566 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
566

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
421.2 2392.6 27% 3.679e-117 94% NC_004667

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 8

Range 1: 8339 to 8896 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
421.2 bits(913) 0.0 179/186(96%) 0/186(0%) Minus/Minus
Query        8  VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVRSDKSRKGNPRLKEKPSTVHVPPVLSSRCEQNKKYTQI*KFGL*YPLQEGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKHYSVTNAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAHQDSRYCGNITY  565
                VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHV SDKSRKGNPRLKE+PSTVHVPPVLSSRCEQNKKYTQI  FGL*YPL+EGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKHYSV NAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAH+DSRYCGNITY
Subject   8339  VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVCSDKSRKGNPRLKERPSTVHVPPVLSSRCEQNKKYTQIKNFGL*YPLREGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKHYSVANAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAHRDSRYCGNITY  8896

Range 2: 8341 to 8895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
417.1 bits(904) 0.0 179/185(97%) 0/185(0%) Plus/Plus
Query       10  RLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRWSRYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKDQIFKFVCTFCFVHTVRIRPVEHVQ*RVFL*VSGCPSYSCRSVHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPA  564
                RLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRW RYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKDQ F FVCTFCFVHTVR RPVEHVQ*RVFL*VSG PSYSCRS+HVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPA
Subject   8341  RLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRWPRYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKDQNFLFVCTFCFVHTVRTRPVEHVQ*RVFL*VSGYPSYSCRSIHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPA  8895

Range 3: 8339 to 8896 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
416.2 bits(902) 0.0 178/186(96%) 0/186(0%) Plus/Plus
Query        8  VGYITTIA*ILMCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFLKWVLKTKFLNLCVLFVLFTP*G*DRWNMYSRGFFFKSRVALPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLH  565
                VGYITTIA*I MCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSF KWVLKTK   LCVLFVLFTP*G DRWNMYSRG FFKSRV LPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLH
Subject   8339  VGYITTIA*ISMCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFSKWVLKTKIFYLCVLFVLFTP*GQDRWNMYSRGSFFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLH  8896

Range 4: 8340 to 8897 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
375.9 bits(814) 0.0 179/186(96%) 0/186(0%) Plus/Plus
Query        9  *VILPQ*RES*CAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIALVTL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS*SGY*RPNF*ICVYFLFCSHREDKTGGTCTVEXXXXXXXXXXXXXXERTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT  566
                *VILPQ*RES CAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIAL TL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS SGY*RP F ICVYFLFCSHREDKTGGTCTVEG SLSLGLPFLLLSE TCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT
Subject   8340  *VILPQ*RESRCAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIALATL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPSRSGY*RPKFFICVYFLFCSHREDKTGGTCTVEGLSLSLGLPFLLLSEHTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT  8897

Range 5: 8584 to 8895 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.9 bits(526) 0.0 98/104(94%) 0/104(0%) Minus/Minus
Query      253  CRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRATRDLKKNPLLYMFHRSYPHGVNKTKSTHKFKNLVFNTHFKKECHRY*LHGWHA  564
                CRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGR TRDLKK+PLLYMFHRS PHGVNKTKSTHK K LVFNTHF+KECHRY*LHGWHA
Subject   8584  CRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKKDPLLYMFHRSCPHGVNKTKSTHK*KILVFNTHFEKECHRY*LHGWHA  8895

Range 6: 8340 to 8540 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.1 bits(319) 0.0 66/67(99%) 0/67(0%) Minus/Minus
Query        9  PFGINLTKNRGTETL*RDQRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNL  209
                PFGINLTKNRGTETL*R QRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNL
Subject   8340  PFGINLTKNRGTETL*RGQRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNL  8540

Range 7: 8583 to 8894 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.7 bits(519) 0.0 99/104(95%) 0/104(0%) Minus/Minus
Query      252  AGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCTLRQE*EGQPET*RKTLYCTCSTGLILTV*TKQKVHTNLKIWSLIPTSRRSATGINFTDGTP  563
                AGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTC LRQE*EG PET*RKTLYCTCSTGL+LTV*TKQKVHTN K WSLIPTSRRSATGINFTDGTP
Subject   8583  AGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCMLRQE*EG*PET*RKTLYCTCSTGLVLTV*TKQKVHTNKKFWSLIPTSRRSATGINFTDGTP  8894

Range 8: 8380 to 8538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.4 bits(274) 0.0 52/53(98%) 0/53(0%) Minus/Minus
Query       49  LRY*PHEEPRHRNTIA*PTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNR  207
                LRY*PHEEPRHRNTIA PTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNR
Subject   8380  LRY*PHEEPRHRNTIAWPTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNR  8538

Nucleotide Sequence (496 letters)

Query ID:ds2016-55_22
Query definition:No definition line
Query length:575
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
496

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
386.4 2105.5 32% 9.256e-107 96% NC_004667
81.3 81.3 24% 6.833e-15 28% NC_022072

Alignments

Grapevine leafroll-associated virus 3, complete genome

Sequence ID: Length: 17919 Number of Matches: 9

Range 1: 14495 to 14989 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
386.4 bits(837) 0.0 159/165(96%) 0/165(0%) Plus/Plus
Query        2  LMGSDAVSSSFMLMNDAGDYFECGVCHNRPYLGREVIFCRKYISGRGVEITTGKNYTSNNWNEASYVIRVDVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLNPLKKSFNARIEDVLNIDDT  496
                LMGSDAVSSSFMLMND GDYFECGVCHN+PYLGREVIFCRKYI GRGVEITTGKNYTSNNWNEASYVI+V+VVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILL PLKKSFNARIEDVLNIDDT
Subject  14495  LMGSDAVSSSFMLMNDVGDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKKSFNARIEDVLNIDDT  14989

Range 2: 14494 to 14988 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
356.6 bits(772) 0.0 161/165(98%) 0/165(0%) Minus/Minus
Query        1  VSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTSTRITYDASFQLFDV*FLPVVISTPLPLMYFLQKITSRPK*GLL*HTPHSK*SPASFISINDDDTASLPIR  495
                VSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTT T ITYDASFQLFDV*FLPVVISTPLP MYFLQKITSRPK*GLL*HTPHSK*SP SFISINDDDTASLPIR
Subject  14494  VSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SPTSFISINDDDTASLPIR  14988

Range 3: 14495 to 14986 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
344.3 bits(745) 0.0 159/164(97%) 0/164(0%) Minus/Minus
Query        2  VVNIQHILDSCVERFLQRIQ*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINGGLC*PIDYVHSYYXXXXXXXXXXXXLTSGDLHSSPTYVFPTEDNFPS*VGSVVTHAALEVISRVVHQHKRR*YCVASHK  493
                VVNIQHILDSCVERFLQR Q*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRIN GLC*PIDYVH YYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VG VVTHAALEVIS VVHQHKRR*YCVASHK
Subject  14495  VVNIQHILDSCVERFLQRFQ*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVISHVVHQHKRR*YCVASHK  14986

Range 4: 14593 to 14988 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
311.7 bits(674) 0.0 128/132(97%) 0/132(0%) Plus/Plus
Query      100  TGSYLL*EIHKWERSGDHHW*ELHVEQLERGVVRNTSGRSRWVSTDHR*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIESFEEIVQRKNRGCAEY*RH  495
                TGSYLL*EIH+WERSGDHHW*ELHVEQLERGVVRNTS RSRWVSTDH *FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIE+FEEIVQRKNRGCAEY*RH
Subject  14593  TGSYLL*EIHRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIETFEEIVQRKNRGCAEY*RH  14988

Range 5: 14727 to 14987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 85/87(98%) 0/87(0%) Minus/Minus
Query      234  CRQYSAHPRFLR*TISSKDSIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*RWS  494
                CRQYSAHPRFLR*TISSK SIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*+WS
Subject  14727  CRQYSAHPRFLR*TISSKVSIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWS  14987

Range 6: 14496 to 14678 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 61/61(100%) 0/61(0%) Minus/Minus
Query        3  SNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*  185
                SNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*
Subject  14496  SNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP*  14678

Range 7: 14494 to 14538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 15/15(100%) 0/15(0%) Plus/Plus
Query        1  SYGKRRSIIVVYADE  45
                SYGKRRSIIVVYADE
Subject  14494  SYGKRRSIIVVYADE  14538

Range 8: 14697 to 14987 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.8 bits(434) 0.0 93/97(96%) 0/97(0%) Plus/Plus
Query      204  YEWT*SMG*HRPPLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*IL*RNRSTQESRMC*ILTT  494
                Y+ T*SMG*HRP LILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY* L*RNRSTQESRMC*ILTT
Subject  14697  YK*T*SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*RNRSTQESRMC*ILTT  14987

Range 9: 14496 to 14654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.3 bits(254) 0.0 51/53(96%) 0/53(0%) Plus/Plus
Query        3  LWEATQYHRRLC**TTREITSSAACVTTDPT*DGKLSSVGNT*VGEEWRSPLV  161
                LWEATQYHRRLC**TT EITSSAACVTT+PT*DGKLSSVGNT*VGEEWRSPLV
Subject  14496  LWEATQYHRRLC**TTWEITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV  14654

Blackberry vein banding associated virus isolate Mississippi1, complete genome

Sequence ID: Length: 18643 Number of Matches: 1

Range 1: 15397 to 15759 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 34/121(28%) 0/121(0%) Plus/Plus
Query        2  LMGSDAVSSSFMLMNDAGDYFECGVCHNRPYLGREVIFCRKYISGRGVEITTGKNYTSNNWNEASYVIRVDVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDS  364
                L   +++S     +  +G + E  + HN PY+ RE I  R+Y      E+ TG+N+T N+W+E+ Y + + V        VN+ +  +D++G+ +    I       +VD   +PG + DS
Subject  15397  LQSGESLSCRIRFLAASGKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPGKYDDS  15759