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Queries

Nucleotide Sequence (1368 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
137
274
411
548
685
822
959
1096
1233
1368

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 16

Range 1: 6545 to 7576 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
632.5 bits(1374) 0.0 259/344(75%) 0/344(0%) Plus/Plus
Query       13  *ALSVWHGASIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFELEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*NAFSATCQLG*DHNPINHWFGHWVGSALLKEIKSTIFRRQYSPVPTRRALQGRHEECNLLWP*AVIPKLRNIRSV*KFRTSNIGRDSGRFYTCIISLEFWS**ELQLPSKS  1044
                *ALS+WH  SIMNNLVKALSAFEFVGVF VLKFPVV+HSVPGSGKSSLIRELISEDE F+AFTAGVPDSPNLTGRYIKPY+PGCAV GK+NILDEYLSV D SGFDVLFSDPYQN+SIP+EAHFIK++ CRFG N CKY  SFGF V SDG+DKV+VGSPF L+VEGVLICFGKEAVDLAVAHNS+FKLPCEVRGSTF+VVTLLKSRDPT ED+HWFY+AATRHR KLIIMQ*+AFSA C+LG +HN I+ W GHW  +A  +E+KST+FR Q+  +P+R ALQGR+++ NLLW  A++P+L +IR +*+F   N    S R +TCI+ LEFWS *EL LPSKS
Subject   6545  *ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKS  7576

Range 2: 7625 to 7729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 26/35(74%) 0/35(0%) Plus/Plus
Query     1093  GPLESLF*LKIVAQARPLHQQ*GRYWEV*RL*ELA  1197
                GPLES F*LK  AQ RPLH  * R WEV*RL* LA
Subject   7625  GPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLA  7729

Range 3: 7790 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 18/25(72%) 0/25(0%) Plus/Plus
Query     1258  SSPANQMRRLKPGLNHWSWLELKSN  1332
                +SP NQMR LKPG N WS LELKS+
Subject   7790  NSPVNQMRLLKPG*NRWS*LELKSS  7864

Range 4: 6540 to 7742 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
557.8 bits(1211) 0.0 262/401(65%) 0/401(0%) Plus/Plus
Query        8  LFRP*VFGMVRVL*II*SKLCLRLNLLVCFVCLNFQLLFTVFQVAVKVA**GSLFLKTRLLWPLQQVCQTVQI*QEGTSSPTLQGVQCKGK*TYLMSTCLSLILLALMCCSQTLTRMSAFQERHTS*KPECVGLVPTSASTFNLLALMFVVMGWIKLL*GRHLNWRLRGSSFALERRP*I*QLHTILTSSCPARCGVQHLTL*RY*SPGIQLQKISIGSTLQPQGIEVN***CSKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRSCNCHPNPCSCRQQ*WQSPRLLY*GHWRVYFD*KLWPKRGPCINSEGGIGRFEGFRN*PYY*R  1210
                L RP*VFG++ VL*II* K C  L+L V  VCLNFQ  F V  V VKV **GS F + R+    QQV QT  I QEGT S  LQGVQC+GK  YLMSTC S I   LMCCS+T T+ SAF +RH S   + VGL    A+ F    L   V  W K L GR L+  L+G  +AL RR  I  L T L S+   +  VQ LT * +*+  IQ Q+I  G TL  Q    N** CSKMPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGG YRDGTKS+TYCGP+QSFPSSGIFGQSENFVPL+LV+ L+AFIH LS+WNSG  R+CNCHPNPCSCRQQ*WQ PRLL+*GHWRV FD*KL PK GPCI+ EGG GRFEGFR *P  *R
Subject   6540  LIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*R  7742

Range 5: 7794 to 7862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 18/23(78%) 0/23(0%) Plus/Plus
Query     1262  PRRIK*GV*SPA*ITGVG*SSKA  1330
                PR IK*G *SPA I GV *SSKA
Subject   7794  PR*IK*GF*SPAKIAGVS*SSKA  7862

Range 6: 6718 to 7833 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
497.8 bits(1080) 0.0 248/372(67%) 0/372(0%) Minus/Minus
Query      186  FKPGFKRLI*FAGEXXXXXXXXXXXXTIINFFSSMANS*SLQTSQYLPHC*CKGLAWATIFNQNRLSSGPNKATLVTATTVVYMSKDLDGNCNSY*DQNSKEIMHV*KRPESRPILEVRNFQTDRIFLSLGMTA*GHNRLHSSCRPCNALRVGTGEYCLLNMVDLISLRSAEPTQCPNQWLMGLWS*PSWQVAEKAFYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDXXXXXXXXXXXXSKPKD*KYLQMLVPNLHILVFMKCASLGMLTFW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKATK  1301
                F PGFK LI*F GE  NLT H  NLT IINFF+S AN *SLQTSQ+L H  CKGL WA +FNQN LSSGPN+ATLV ATT VYMSKDLDGN NSY DQNSK+ +HV* R +    L  +N Q  RI  S G  A  H++L+   RPCNA R G    C LN VDL S  +A   QCP+Q  M LW  P+ Q AEKA YC+II+   CLVAA *NQCLSS VGSLDF  VTT  VEP TSQGNL SELCATARSTAS PK + TPSTSS  GDPT TLS PSL T KPK+ +YLQ+  PNL +   MKCASLGML FW GSENSTSKPE S TDKYSSS+  FP TAHPG *GLMYLPVR GLSGTPAVKA K
Subject   6718  F*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMK  7833

Range 7: 6541 to 6615 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/25(80%) 0/25(0%) Minus/Minus
Query        9  NSNADKALTKLFIILAPCQTLKA*T  83
                NSNAD ALTKLFIIL  CQ LKA*+
Subject   6541  NSNADNALTKLFIILK*CQILKA*S  6615

Range 8: 6656 to 7732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
477.1 bits(1035) 0.0 218/359(61%) 0/359(0%) Minus/Minus
Query      124  YG*FLKPSNLPIPPSLLMQGPRLGHNFQSK*TLQWP**SNLGDCHYCCLHEXXXXXXXXXXXGPEFQRDNACIKATRVTTNIRGTKFSD*PNIPELGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILLHYYQFTSMPCGCNVEPMLIF*SWIPGLQ*RHNVKC*TPHLAGQLEVRIVCNC*IYGLLSKANEDPLNLQFKWRPYNNFIHPITTNIKAKRLKVLADVGTKPTHSGFYEVCLSWNADILVRV*EQHIKARSIRDRQVLIKYVYFPLHCTPWSVGLDVPSCQIWTVWHTCCKGHKSLVFRNKLPY*ATFTATWNTV  1200
                +G* LKPSNLP PPS  MQGP LG +FQSK TLQWP**SNLG CHYCCLHEQGFGWQLQ L  PEFQ DN C+ A R  T+I+GTKFSD PNIPELG DC GPQ*V LFVPSL* PP GN  +LSPE GRFDFL+KC T+PMPKP VNGVMV AQ AGC*KGILLH YQF  + C  NV+P+ I   WI   Q  ++VK *T +     E R+V N  I+ LL+KA   P N+  K RP+N+F+  +T N+K +  K+ A +  KPT     E+CL  NAD+LV V EQHIK   I D QVLIKY+ FP HCTPW + L+VPSC+I  VW+TCC+ ++ L+  N LPY* TFT T +T+
Subject   6656  HG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTM  7732

Range 9: 7793 to 7861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 18/23(78%) 0/23(0%) Minus/Minus
Query     1261  AFEL*PTPVI*AGLQTPHLIRRG  1329
                AFEL* TP I AGLQ PHLI RG
Subject   7793  AFEL*LTPAILAGLQKPHLIHRG  7861

Range 10: 6536 to 6601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 16/22(73%) 0/22(0%) Minus/Minus
Query        4  QSFD*IIHNTRTMPNT*GLNNA  69
                Q F+*IIHNT+ MPNT*GL N+
Subject   6536  QCFN*IIHNTQIMPNT*GLINS  6601

Range 11: 7519 to 7884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
241.6 bits(521) 0.0 105/122(86%) 0/122(0%) Plus/Plus
Query      987  MHYLFGILVLVGVAIAIQILAHVDNSSGSHQGCFIRATGESILIENCGPSEALASTVREVLGGLKALGISHTTEEIDYRC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQLKGQTHP  1352
                M+ LFGILVLVG+ IAIQILAHVD+SSG+HQGCFIRATGESILIENCGPSEALASTV+EVLGGLKALG+S   EEIDY C*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQ +G   P
Subject   7519  MYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAP  7884

Range 12: 7000 to 7476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
142.2 bits(304) 0.0 76/159(48%) 0/159(0%) Plus/Plus
Query      468  G*SCCRVAI*TGG*GGPHLLWKGGRRSSSCTQF*LQVALRGAGFNI*RCDVIEVQGSNFRR*ALVLRCSHKASK*TDNNAVKCLFSNLPTGLRP*PH*PLVWALGWFCTS*GNQIYHIQETIFTSSHTEGITGTARRV*PIVALGSHSQAQEYSVSLKI  944
                G S C VA  T  * G ++LW GG  S  C Q *+Q+ L    FN *R +  E++ SN R *ALVL C +K     DN+AV+CLFS+L  G +P* H* L WALG  C  *G+QIY IQ T   +S T G+TGT ++V*  V   + S A  YS +L+I
Subject   7000  GQSHCGVAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGYSANLRI  7476

Range 13: 6676 to 6960 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 56/95(59%) 0/95(0%) Plus/Plus
Query      144  *K*PNKGAYF*RRGFCGLYSRCARQSKSDRKVHQALRSRVCSARENKHT**VLVCL*YFWL*CAVLRPLPECQHSKRGTLHKNQNV*VWYQHLQV  428
                *K* NKGA F    F   +SRC+RQ  S RKVH AL SRVCSARE+ +T**VLV   +F  *CAVL P+P+ QHS RGT H+ +N+*VW ++LQ+
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQI  6960

Range 14: 6544 to 6624 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 18/27(67%) 0/27(0%) Plus/Plus
Query       12  LGLKCLAWCEYYE*FSQSFVCV*ICWC  92
                LGLK LA  EYYE*FS S V +*+C C
Subject   6544  LGLKYLALFEYYE*FS*SIVSI*VCRC  6624

Range 15: 6642 to 7883 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
452.9 bits(982) 0.0 237/414(57%) 0/414(0%) Minus/Minus
Query      110  GCVWPFSCF*ALANSSDLSRASNASFDSPGSLPI*LAI*PI*QR*SISSVVWLIPKAFKPPNTSLTVDARASLGPQFSIKIDSPVALIKQPW*LPLLLST*ARIWMAIATPTRTRIPKR*CMYKSDQSHDQY*RYEIFRLTEYS*AWE*LPRATIGYTLRAVPVMPSVWELVNIVS*IW*I*FP*EVQNQPNAQTNG*WGYGLSPVGRLLKRHFTALLSVYFDALWLQRRTNAYLLKLDPWTSITSQRQMLNPAPRRAT*SQNCVQLLDLRPPFQSK*GPPQPPVQMATLQQLYPPHHYKHQSQKIESTCRCWYQTYTFWFL*SVPLLEC*HSGKGLRTAHQSQKYQRQTSTHQVCLFSLALHTLERRA*CTFLSDLDCLAHLL*RPQKPRLQK*APLLGYFYRYLEHCEQQLE  1351
                G + P  CF*ALANSSD SRAS ASFDSPGS PI*LAI PI*Q *SISS   L PKAFKPP+TS TVDARASLGPQFSIKIDSPVAL+KQPW LPLLLST*ARIWMAI  PT+TRIP R  MY+ D ++D++* ++I RL EY  A E L   T+ YT   VPV P+V EL+++V *I *I* P ++Q++PNAQ N  W YG  P+ RLLKRH TA LS+    L  Q +T+AY L LD   S   +R  LN    +  * Q+C Q  D  PP+QS   P Q  V  AT Q L P  H    +++ +  C+   QTY F   *+VPL EC*  G G RTAHQ+ K   +TSTHQV   SLALHTLE +A*CTFL D  CL HLL*+      +K APLL YFY Y  H E  LE
Subject   6642  GALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQYMYECD*TYDKH*GHKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHLV*KATPQ*LCPNRHC*P*NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLE  7883

Range 16: 6540 to 6596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 15/19(79%) 0/19(0%) Minus/Minus
Query        8  L*LNYS*YSHHAKHLRPKQ  64
                L*LNYS*YS++AK+LRP Q
Subject   6540  L*LNYS*YSNNAKYLRPNQ  6596

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 6

Range 1: 6485 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 79/195(41%) 0/195(0%) Plus/Plus
Query       40  SIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFELEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLL  624
                ++M+ +V  L  + F      ++  ++VH+VPGSGK++LIRE ++ +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS    +GFD  FSDP+QN      AHF+     RFG N     QS G+ V S   D+++  + F  E+EG +IC  K   D    ++ +++LPC+VRGSTF+VVT +
Subject   6485  NVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 2: 7163 to 7381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
114.7 bits(244) 0.0 39/73(53%) 0/73(0%) Plus/Plus
Query      713  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFG  931
                MP  QP +++K++ PL IGL +G+V+  L +S LP++GDNIH  PHGG Y DGTK + YCGP++SFP+ G+ G
Subject   7163  MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG  7381

Range 3: 7446 to 7577 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 13/44(30%) 0/44(0%) Plus/Plus
Query     1005  ILVLVGVAIAIQILAHVDNSSGSHQGCFIRATGESILIENCGPS  1136
                +++ V  A+   I+ ++   + S   C I  TGES+ + NC  S
Subject   7446  VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLS  7577

Range 4: 7162 to 7380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 29/73(40%) 0/73(0%) Minus/Minus
Query      712  PNIPELGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGI  930
                P  P +G    GPQ*+   VPS * PP G  *+LSP  G    +K   T P  +PM  G     +  GC +GI
Subject   7162  PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI  7380

Range 5: 6943 to 7062 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/40(50%) 0/40(0%) Minus/Minus
Query      498  VTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS  617
                VTTS VEPRT QG+L S+     +S+  F  QM  PS+S+
Subject   6943  VTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSA  7062

Range 6: 6634 to 6801 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 23/56(41%) 0/56(0%) Minus/Minus
Query      189  FW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAT  356
                F *GSE   S P  +  ++YSSSM   P    P     M  P  FG SG+P  KA+
Subject   6634  F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKAS  6801

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 7

Range 1: 6705 to 7166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(266) 0.0 61/154(40%) 0/154(0%) Plus/Plus
Query       40  SIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFEL  501
                SIM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  +    A T GVP+  N+ G YIK    G   +G  +ILDEYLS   ++GF+ LFSDPYQN      AHFI     RFG    +  +  G+++ S   D V   + F+L
Subject   6705  SIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL  7166

Range 2: 7378 to 7725 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 46/116(40%) 0/116(0%) Plus/Plus
Query      707  SKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRSCNCHPNPCSC  1054
                + MPF QP +++K++ P+ +G+ + +VL  L +S LP  GDNIH  PHGG+Y+DGTK ++YCGPR SFPSS +       +  I++  + A   +     SG  R   C P   +C
Subject   7378  TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPRDSFPSSSLISSGTPMIIGIIIFLIFAIYVSEKWSRSGSRRCSCCVPGAPAC  7725

Range 3: 7167 to 7301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 20/45(44%) 0/45(0%) Plus/Plus
Query      499  LEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSR  633
                +E EGV+IC  K   D    H+ ++K PC+VRG+TFD+VT +  +
Subject   7167  IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK  7301

Range 4: 7332 to 7373 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 9/14(64%) 0/14(0%) Plus/Plus
Query      664  YVAATRHRSKLIIM  705
                +VA TRHRSKL+++
Subject   7332  FVALTRHRSKLVLV  7373

Range 5: 7163 to 7288 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 23/42(55%) 0/42(0%) Minus/Minus
Query      495  NVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS  620
                NVT S V PRT QGNL S LC   +S+  F +Q+ TPS S S
Subject   7163  NVTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS  7288

Range 6: 7377 to 7586 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 29/70(41%) 0/70(0%) Minus/Minus
Query      706  LGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILL  915
                LG + LGPQ*+ LFVPS * PP G  *ILSP  G+   +    T     P   G  +     G  KG+L+
Subject   7377  LGKESLGPQ*LILFVPS**LPP*GKL*ILSPTCGKVLLVNVNSTTATAMPTAIGNTLFE*SGG*AKGMLV  7586

Range 7: 6854 to 7021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 24/56(43%) 0/56(0%) Minus/Minus
Query      189  FW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAT  356
                FW*GSE     P     DKYSS M   P    P    L+Y+P     SGTP V A+
Subject   6854  FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTAS  7021

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 7

Range 1: 6671 to 7129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 60/153(39%) 0/153(0%) Plus/Plus
Query       43  IMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFEL  501
                IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  +    A T GVP+  N+ G YIK    G   +G  +ILDEYLS   ++GF+ LFSDPYQN      AHFI     RFG    +  ++ G+++ S   D V   + F L
Subject   6671  IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL  7129

Range 2: 7347 to 7619 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.9 bits(251) 0.0 40/91(44%) 0/91(0%) Plus/Plus
Query      713  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFI  985
                MPF QP +++K++ P+ IG  + LVL  L +S LP  GDNIH  PHGG+Y+DGTK ++YCGP+ SFPSS +       + +++++T   ++
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSLISSGTPMIIIVILLTAAIYV  7619

Range 3: 7130 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 21/45(47%) 0/45(0%) Plus/Plus
Query      499  LEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSR  633
                +E EG +IC  KE  D    H+ ++KLPC+VRG+TFD VT +  +
Subject   7130  VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 4: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 9/15(60%) 0/15(0%) Plus/Plus
Query      661  FYVAATRHRSKLIIM  705
                +YVA TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 5: 7126 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 27/67(40%) 0/67(0%) Minus/Minus
Query      495  SLLRCLVAAT*NQCLSSEVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS  695
                +L  CLV+AT     ++      +  VT S V PRT QGNL S  C   +S+ SF +Q+  PS S+S
Subject   7126  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS  7326

Range 6: 7340 to 7549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 31/70(44%) 0/70(0%) Minus/Minus
Query      706  LGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILL  915
                LG + LGPQ*+ L VPS * PP G  *+LSP  G+   +K  RT     P+  G  +L    G  KGIL+
Subject   7340  LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILI  7549

Range 7: 6817 to 6984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 25/56(45%) 0/56(0%) Minus/Minus
Query      189  FW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAT  356
                FW*GSEN   KP     D+YSS M   P    P    L+ +P  F  SGTP V A+
Subject   6817  FW*GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTAS  6984

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 6

Range 1: 6676 to 7134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 61/153(40%) 0/153(0%) Plus/Plus
Query       43  IMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFEL  501
                IM  ++  L+ F F      L  P+VVH+VPGSGK++LI++ +  +    A T GVP+  N+ G YIK    G   +G  +ILDEYLS   ++GF+ LFSDPYQN      AHFI     RFG    +  Q  G+++ S   D V   + F+L
Subject   6676  IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL  7134

Range 2: 7349 to 7693 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 45/115(39%) 0/115(0%) Plus/Plus
Query      710  KMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRSCNCHPNPCSC  1054
                +MPF QP +++K++ P+ +G+ + +VL  L +S LP  GDNIH  PHGG+Y+DGTK ++YCGP+ SFPSS +       +  I++  + A   +     SG  R   C P   +C
Subject   7349  RMPFSQPPDYSKSVFPVAVGVAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKDSFPSSSLISSGTPLIVGIIIFLIFAIYVSEKWSRSGNRRCICCIPGSPAC  7693

Range 3: 7135 to 7269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 18/45(40%) 0/45(0%) Plus/Plus
Query      499  LEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSR  633
                ++ EGV+IC  +   D    H+ ++KLPC+VRG+T+D+VT +  +
Subject   7135  VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK  7269

Range 4: 7339 to 7554 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 31/72(43%) 0/72(0%) Minus/Minus
Query      700  LGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILLHY  915
                LGN+  GPQ*+   VPS * PPCG  *ILSP +G+   +K   T     P   G  +L    G  KGIL+ +
Subject   7339  LGNESFGPQ*LIRLVPSW*LPPCGKL*ILSPTWGKVLLVKVKSTTATATPTATGKTLLE*SGG*EKGILISH  7554

Range 5: 7131 to 7331 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 28/67(42%) 0/67(0%) Minus/Minus
Query      495  SLLRCLVAAT*NQCLSSEVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS  695
                +L+ CLV AT    L+S        NVT S V P T QG+L S LC   +S+    +Q+ TPS S+S
Subject   7131  NLVLCLVKATKRSGLTSSSRGFS*INVTMSYVAPLTWQGSLYSTLCHLRKSSTLSSRQIITPSGSTS  7331

Range 6: 6822 to 6980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 22/53(42%) 0/53(0%) Minus/Minus
Query      189  GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAT  347
                GSE    KP     D+YSS +  FP    P    LM +P  F  SGTP V A+
Subject   6822  GSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTAS  6980

Nucleotide Sequence (324 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
324

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
234.8 827.8 27% 2.189e-61 51% NC_001948
203.6 429.0 34% 5.334e-52 38% NC_018714
197.6 356.5 41% 3.258e-50 37% NC_008552
201.3 550.4 45% 2.568e-51 40% NC_003462
199.0 490.6 35% 1.278e-50 38% NC_014821

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 5864 to 6169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.8 bits(506) 0.0 98/102(96%) 0/102(0%) Minus/Plus
Query       18  EWVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG  323
                EWVR RGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSF+IMRFTGEASTFLFNTMANMLFTFLRYELTGSESIA  G
Subject   5864  EWVRTRGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAG  6169

Range 2: 5953 to 6168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.3 bits(289) 0.0 57/72(79%) 0/72(0%) Plus/Minus
Query       19  PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNSN  234
                P  AIDS+PVSSYL+ VNN+ AIVLN+ VLASPVNLII  DPS DP+*I MNS*SKI+SSGNPKNFIICNSN
Subject   5953  PANAIDSEPVSSYLRKVNNMLAIVLNRNVLASPVNLIIENDPSFDPK*IFMNS*SKIKSSGNPKNFIICNSN  6168

Range 3: 5863 to 5901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 11/13(85%) 0/13(0%) Plus/Minus
Query      286  VQMPVNPLALTHS  324
                VQ+PVNPL LTHS
Subject   5863  VQIPVNPLVLTHS  5901

Range 4: 5864 to 6154 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 57/97(59%) 0/97(0%) Plus/Minus
Query       33  *LGPCQFVP*ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNPL  323
                *L  C FVP + +QH+ H V+QK  G   K HY + S+L S+MNF E I+QN IFR  QKFHYLQ +C*D+V+LG IKGFVV* CAN+SE S  +PL
Subject   5864  *LRAC*FVPQKGEQHVSHSVKQKCAGLPSKPHYRE*SEL*SQMNFYEFIVQN*IFR*PQKFHYLQFEC*DEVVLGSIKGFVV*FCANSSESSSSDPL  6154

Range 5: 5865 to 6155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 56/97(58%) 0/97(0%) Plus/Minus
Query       32  LTRTLSVRTLRM*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDEF**THNPKSDLQAIPKISLFATQMLR*SDPGRHQRLRSLTLCKCQ*TLWP*PT  322
                LT++L VRT   *TT  P C*T+  W   * SL*+ I+A I +EF * H+PK +LQ  PKISL A +ML *S  G+HQRLRSL LCK Q* L  *PT
Subject   5865  LTQSLLVRTSER*TTC*P*C*TEMCWPPQ*TSL*RMIRALIPNEFL*IHSPKLNLQVTPKISLSAIRMLG*SGLGKHQRLRSLILCKFQ*IL*F*PT  6155

Range 6: 5865 to 6029 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 37/55(67%) 0/55(0%) Minus/Plus
Query      158  SGLGPEGSLAFAQSQTTKPLMPPRITLS*HLSCK**NFWDCLKI*FWIMSSSKFI  322
                SG   E SL FAQ+QTTKPLM P+ T S*H +C+**NFW  LKI*FW M+S KFI
Subject   5865  SGSELEDSLEFAQNQTTKPLMLPKTTSS*HSNCR**NFWGYLKI*FWTMNS*KFI  6029

Range 7: 6075 to 6155 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 15/27(56%) 0/27(0%) Minus/Plus
Query       32  KPVPFCSTQWRICCLHS*GTN*QGPSQ  112
                +P  FC T W  CC   *GTN*Q  SQ
Subject   6075  RPAHFCLTLWLTCCSPF*GTN*QALSQ  6155

Range 8: 5932 to 6156 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 38/75(51%) 0/75(0%) Minus/Plus
Query       31  PGSLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYILKVRTDRVRVN  255
                P  L+ SI +A+NEIFG+ *R +FGL*+H+NS  I+A I  YNE+Y   Q++ V H G +VV++ +VRT+R+ VN
Subject   5932  PRPLHPSIRIADNEIFGVT*RFNFGL*IHKNSFGIKARIILYNEVYWGGQHISV*HYG*HVVHLSEVRTNRL*VN  6156

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 4

Range 1: 5914 to 6219 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 83/102(81%) 0/102(0%) Minus/Plus
Query       18  EWVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG  323
                EWV    F GICTESDYEAFDASQDHFILAFEL++MKFLGLP DLI DY FIK HLGSKLG+FAIMRFTGEASTFLFNTMANMLFTFLRY+L+G E+I   G
Subject   5914  EWVTVHKFNGICTESDYEAFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEASTFLFNTMANMLFTFLRYDLSGKEAICFAG  6219

Range 2: 6006 to 6218 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.5 bits(202) 0.0 42/71(59%) 0/71(0%) Plus/Minus
Query       19  PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS  231
                P + I S P+ SYL+ VNN+FA+VLNKKVLASPV  +IAK PS +PR +LM  *S +RS G P+NF+  NS
Subject   6006  PAKQIASLPLKSYLRKVNNMFAMVLNKKVLASPVKRMIAKLPSFEPRWVLMKV*SAMRSGGRPRNFMTSNS  6218

Range 3: 5914 to 6162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 35/83(42%) 0/83(0%) Plus/Minus
Query       75  HIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNPL  323
                H+ H VEQ+   FT K+H  K +KL ++M F+E +I N++ R++++FH LQLK  +KV+L  +K F++* CA   E    +PL
Subject   5914  HVCHGVEQESACFTSKAHDCKIAKLRTQMGFNESVISNEVGRKTKEFHDLQLKSKNKVVL*RVKCFII*FCAYPIELMDGDPL  6162

Range 4: 5985 to 6173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 24/63(38%) 0/63(0%) Minus/Plus
Query       64  GSLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYI  252
                G LY   *V  +EI   + R    L  H N S  +AW FC + +Y *S++  VQH+G++V+++
Subject   5985  GPLYSCF*VGGHEIPWSSARPHC*LHFH*NPSGFEAWQFCNHALYW*SKHFLVQHHGKHVIHL  6173

Narcissus symptomless virus, complete genome

Sequence ID: Length: 8281 Number of Matches: 3

Range 1: 4994 to 5299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.6 bits(425) 0.0 76/102(75%) 0/102(0%) Minus/Plus
Query       18  EWVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG  323
                +WV+A  F+G+CTESDYEAFDASQDH+I+AFE+ +MK+LGLP DL+ DY FIK HLGSKLGSFAIMRF+GEASTFLFNTM+NMLFTF++YE+TG ESI   G
Subject   4994  DWVKANNFSGVCTESDYEAFDASQDHYIMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEASTFLFNTMSNMLFTFMKYEITGKESICFAG  5299

Range 2: 5086 to 5298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
86.3 bits(182) 0.0 41/71(58%) 0/71(0%) Plus/Minus
Query       19  PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS  231
                P + IDS PV SY  NV +I  +VLNKKVLASP NL+IAK PSL+PR +L+  *S  RS G P+ FI   S
Subject   5086  PAKHIDSFPVISYFMNVKSILLMVLNKKVLASPENLMIAKLPSLEPRCVLIKM*SFTRSLGRPRYFITATS  5298

Range 3: 4994 to 5254 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.5 bits(152) 0.0 32/87(37%) 0/87(0%) Plus/Minus
Query       63  ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNPL  323
                E ++HI H VEQ+  GFTRK H S+ S+  + M F++ ++ +Q+  +++ FHY  L+  D +IL  +KGF++   AN+ E    +P+
Subject   4994  EREEHITHGVEQESAGFTRKPHDSEASEFRT*MRFNKDVVIHQVPWKTEVFHYCDLESHDVMIL*CVKGFIIRFSANSREVVSLDPI  5254

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 7

Range 1: 5916 to 6218 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
201.3 bits(433) 0.0 82/101(81%) 0/101(0%) Minus/Plus
Query       18  WVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG  320
                WV    F G+CTESDYEAFDASQDHFILAFEL++MKFLGLP DLI DY FIK HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRY+L G E+I   G
Subject   5916  WVTTSKFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPSDLIADYTFIKTHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYDLNGREAICFAG  6218

Range 2: 6005 to 6217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 43/71(61%) 0/71(0%) Plus/Minus
Query       19  PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS  231
                P + I S P+ SYL+ V +IFAIVLNKKVLASPV  I+AK PSLDP+ +LM  *S +RS G PKNF+  +S
Subject   6005  PAKHIASLPLRSYLRKVKSIFAIVLNKKVLASPVKRIMAKLPSLDPKWVLMKV*SAMRSEGKPKNFMTSSS  6217

Range 3: 5916 to 6194 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.2 bits(197) 0.0 40/93(43%) 0/93(0%) Plus/Minus
Query       42  PCQFVP*ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNP  320
                P + +P + ++HI HC+EQ+G  FT ++H  K S  GS+M FDE +I+N++ RQ+Q+FH  +LK  DK+IL GIK  ++ L A+  E +  +P
Subject   5916  PIEIIPEKGEKHICHCIEQEGACFTCEAHNGKTS*FGSQMGFDEGVIRNEVGRQTQEFHDFKLKSQDKMILRGIKCLIIRLGAHTIEFTCSHP  6194

Range 4: 5987 to 6181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 26/65(40%) 0/65(0%) Minus/Plus
Query       55  SLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYILKV  249
                S Y   *  ++EI G A R   GL +HQN   IQ   FC+  ++ *S++L VQ+NG+Y  ++ +V
Subject   5987  SFYPGF*A*SHEILGFAFRPHCGLHLHQNPFGIQTRKFCHYALHR*SKHLLVQYNGKYAFHLSQV  6181

Range 5: 5947 to 6159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 29/71(41%) 0/71(0%) Plus/Minus
Query       77  YSPLC*TKRYWLHP*ISL*QKIQAWIQDEF**THNPKSDLQAIPKISLFATQMLR*SDPGRHQRLRSLTLC  289
                Y PL *T+R  LH * +  Q    WI + F**  NP+   +A P+IS    Q   *+D  RHQ   + T C
Subject   5947  YLPLY*TRRCLLHL*SA*WQNFLVWIPNGF**RCNPQ*GRKANPRIS*LQAQKPG*NDLARHQMPHNQTRC  6159

Range 6: 5935 to 6072 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 21/46(46%) 0/46(0%) Minus/Plus
Query      164  SLAFAQSQTTKPLMPPRITLS*HLSCK**NFWDCLKI*FWIMSSSK  301
                S+  A S   + LMP +I LS  LS K *N W CL     I  SSK
Subject   5935  SMVCAPSLIMRHLMPRKIILSWLLSLKS*NSWVCLPTSLRITPSSK  6072

Range 7: 6118 to 6162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 9/15(60%) 0/15(0%) Minus/Plus
Query       74  RVKPVPFCSTQWRIC  118
                +VK  P CS QW+IC
Subject   6118  QVKQAPSCSIQWQIC  6162

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 5

Range 1: 5920 to 6222 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.0 bits(428) 0.0 80/101(79%) 0/101(0%) Minus/Plus
Query       18  WVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG  320
                WVR   F G+CTESDYEAFDASQDHFILAFEL++MK+LGLP DLI DY FIK HLGSKLG+FAIMRFTGEASTFLFNTMAN+LFTFLRY+L G E+I   G
Subject   5920  WVRIHKFNGVCTESDYEAFDASQDHFILAFELEVMKYLGLPADLISDYTFIKTHLGSKLGNFAIMRFTGEASTFLFNTMANILFTFLRYDLNGKEAICFAG  6222

Range 2: 6009 to 6221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.1 bits(210) 0.0 44/71(62%) 0/71(0%) Plus/Minus
Query       19  PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS  231
                P + I S P+ SYLK VN+I A+VLN+KVLASPVN I+AK PS DPR*+LMN *S+I+S+G P+ F+  NS
Subject   6009  PAKQIASFPLRSYLKKVNSILAMVLNRKVLASPVNRIMAKLPSFDPR*VLMNV*SEIKSAGKPRYFMTSNS  6221

Range 3: 5988 to 6185 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 27/66(41%) 0/66(0%) Minus/Plus
Query       55  GSLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYILKV  252
                G L+  +*+ ++EI   A R DF L +HQNS W++ W FC+N I+ *SQ+  +Q++G Y +++ +V
Subject   5988  GPLHSGL*IGSHEISWFASRFDFRLHIHQNSPWVKTW*FCHNAIHW*SQHFSIQYHG*YTIHLFEV  6185

Range 4: 5920 to 6213 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 37/98(38%) 0/98(0%) Plus/Minus
Query       27  SN*LGPCQFVP*ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNP  320
                +N L   + +P + + +I H +E K  GFT +SHY K +K   K++FDE +I NQI  Q++ FH  Q K  ++V+L  IK  VV  C +  E    +P
Subject   5920  TNCLLSVKVIPQKGE*YISHGIE*KSAGFTSESHYGKITKF*PKVSFDECVI*NQICWQTKIFHDFQFKGQNEVVL*CIKSLVVRFCTHTIEFVNSDP  6213

Range 5: 5954 to 6184 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 34/77(44%) 0/77(0%) Plus/Minus
Query       56  TLRM*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDEF**THNPKSDLQAIPKISLFATQMLR*SDPGRHQRLRSLTL  286
                T + *  Y P  * ++ WLH *I+L Q  Q   Q EF**  N KS+L A   IS    Q   *S P  HQ+ RS  L
Subject   5954  TSKR*IVY*PWY*IEKCWLHQ*IALWQNYQVLTQGEF**MCNLKSNLLANQDIS*LPIQRPE*SGPVMHQKPRSQIL  6184

Nucleotide Sequence (2000 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
200
400
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1000
1200
1400
1600
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2000

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
1455.0 4681.0 36% 0 44% NC_001948
265.0 1076.3 15% 1.016e-129 28% NC_014821
258.1 969.5 19% 5.599e-127 29% NC_003462
260.0 877.8 21% 1.443e-126 32% NC_018714
203.1 1014.8 19% 5.574e-122 32% NC_009892

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 12

Range 1: 2966 to 4936 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1455.0 bits(3169) 0.0 598/657(91%) 0/657(0%) Minus/Plus
Query        1  VSKLLDVPRSKKQSIIVLEGALAIDTSYGPKVLGSFEVFKGDFNIKKIEDGSIFVISYKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQTVLRQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKKEGWDVVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGISVE  1971
                +SK+L++PRSKKQSI+VLEGAL+I+T YGPKVLGSFEVFKGDF+IKK+E+GSIFVI+YKAP+RS+G+LRVH +ECSFSGSKEVLLGCQIEA ADYDIDDFN F VPGDGNCFWHSVGFLLSTDGLALKAGI SFVESE LV P LSA  + +QL +NAYAENEMIALFCIRHHVR I+ITPEYEVSWKFG+ EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINP G++SALFDITNEHIRHVEKIGNGPQSIKVDELR+VKRSALD LSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWLSGIST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDDSCKVAKAG+SKKEGWDVVTFEVFLRK+A LKAGHCVIFDEVQLFPPGYIDLCLL IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSK  LDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK GG+LISHDSFHTDDRRW+TALSRFSHNLDLVNITG+ VE
Subject   2966  LSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVE  4936

Range 2: 3466 to 4935 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
840.0 bits(1827) 0.0 383/490(78%) 0/490(0%) Plus/Minus
Query        2  STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETKIASKEVLDRAKRKSCMLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPASEMKASLRMVNRQRSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTTSQPSFFDLPAFATXXXXXXXXXXXXXXARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLISEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSSSTFILCGPLPIFSTCLICSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHRGHSLSPNFQLTSYSGVIMISLT*CLMQN  1471
                STL PVMFTKSKLWLKRD+AV H RSSV  ESC+++ PP+LKFNPVDSP VSVSCF+PK*D TIFFSSKLETK ASK   D A+RKSC+LWK+A*SA AAV+EPFLK*HGSLDSNIGFTNL LSMLYL  LPSS+L++SLCSAP IARSF ESYVL* GSPASEMKASLR++++ RS+ PGGN+ TSSK+TQWPAF  A FLR TSKVTTS PSFFDLPA ATLQLSSIS+S LIE A+A LGETKVTNLPSDLF+KLLY+KL PAP VPSTTVNS  LIS VDIPES G  SLNFSSLITPV+PPSKHPC+FSA SKLGK*VI DPFIER+SRADR T  +SSTF+L GPLPIFSTCL+CSLVMSN A++ P GL+TSISP ISHLAQMS ASKASA+YIM +PPP* SSS +* V GLHR*  TSTSRLPSAEA+AVIMQPF+GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LT C MQN
Subject   3466  STLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVSCFIPK*DWTIFFSSKLETKTASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQN  4935

Range 3: 2968 to 3423 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.0 bits(476) 0.0 109/152(72%) 0/152(0%) Plus/Minus
Query     1514  CLKTVWADKDGSTRDSLSTKELMPAFKASPSVLNKKPTECQKQLPSPGTGNLLKXXXXXXXXXXI*QPSSTSLDPEKEHSVL*TLNLPEDLTGAL*DITNMEPSSIFLMLKSPLNTSKDPKTFGP*LVSIASAPSRTIIDCFLLLGTSSNFD  1969
                CL+   A++ G T+ SLSTK+ +PAF+ASPSVL+KKPTECQKQLPSPGT  +LKSS+S*SA ASI QPS+TSLDPE EHS L*TLNLP DL GAL  IT +EPSSIFLM KSPL TSKDP+TFGP* VS+  APSRT IDCFLL G S   D
Subject   2968  CLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLD  3423

Range 4: 3047 to 4936 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
660.9 bits(1436) 0.0 313/630(50%) 0/630(0%) Plus/Minus
Query        1  FHADASNVYQVQVVAKAR*GRHPSTVISVE*VM*N*NSTIFEV*PC*FAKS*CELLHAKVRLHNLLLLKA*NQNRI*GGLRPSQKEVMHVVEDGIISECCSHGALLEMTWQSGLKHWIHKPPTLNVVPVGLTLK*SQYITLLSPQYCAILLGVICALTGITSK*NESITSYGQQTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFKGHNVPTFFF*FTSLCHFATIIHFQVSFN*IG*SPSG*NKGYEFAFRPLHKALVQKAFTSSKGAKHDCQLSRFDIRS*YS*EPWLGIVKLLITYHTS*AS*QTPLQLFSPFKTWKVSYL*SIH*KEVKSRSFHSSQLIHLYTLRAVANLLNMSYMFVGYVK*S*HAPARIDDLNLPIDITLSTNVKCFESLSEIHHV*ATTLTQLFKYVICGGPAQIVKNIHFTSTKRRGDSCDHAAIQWSTRLKMI*LQA*DSTQRPLAISKLPTHLIFWGDND*PHMMPNAE*GYHFVLCISIITELPQNGLG*QRWIYKRFTFNERTYACFQSKPICTQQETH*MPKTVTITRYREFVKVINVIISRGFDLTTEQHFLGSRKRALRLVNSQLARRSHRSLVRYHEYGTIFNLLNVKVPFEHLERSQNLWSI  1890
                FH    +V+Q+Q+VA+AR*   P  +I V+ +M*  NS IFE+ P *F K  CEL H+KV L  L LLK  NQN I G   P Q++VMH++ED IISE  SH AL E+TWQS  +HW+HKPP   V+P+   LK S+Y+TLLS Q C ILL VICALT ITSK*NESIT+Y +Q  ++++ R+QL+LIKN  +A LQ CNF K++ K + +P F  * T   +FA IIHF++ F+*I *S SG NKGYEF  RP H+ LVQ+   S K  KHD Q    +I S Y+ +P   I +LLITY+ S*A *QT LQLFSP K W+V Y   IH*KE++  S    Q IH Y LRA+   LNM Y+ + YVK   +   RI+  NL I IT S NVK  +S S IHHV A +LT+L K +I  G  QI+ +I+FT +K   + CDHA IQW   L++I* +A +ST  PL   + PT+ IFW D+  P+++PNAE*  H +L ISI+ +L +N  G*+ W Y+  T +ER+      K I  + +T+ MPK + ITR+RE VK+IN+IIS   +L   Q+  GS K A   VN Q A  S+  LVRY++  T  +LLNVKVPFE+ +R Q+ W+I
Subject   3047  FHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECELFHSKVGLDYLFLLKTGNQNGIQGTF*PRQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTI  4936

Range 5: 2972 to 3022 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 11/17(65%) 0/17(0%) Plus/Minus
Query     1915  FKNYY*LLLTPRHI*QL  1965
                FKN  *LL  PRH * L
Subject   2972  FKNQN*LLFAPRHF*NL  3022

Range 6: 2980 to 4854 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
501.4 bits(1088) 0.0 293/625(47%) 0/625(0%) Minus/Plus
Query       83  RCA*E*EAINNSS*RRACDRHQLWTKGFGIFRGVQRGL*H*ED*RWFHIRDILQGSCEIFWQVESSQDGVLFFWIQGSAARLSNRSLC*L*H**L*QIPCTW*W*LFLAFSGFLVEYRWACFESRHKFFR*K*ISCRSIFVSPNRFEAAQ**CLCRERNDSLILH*ASCEANHYHPRI*GELEVWR*RVASVWNLMLAVKSFSTLCSIEWLHDHSYRLCAW*T*SGCS*LSVQALHKSHI*RAVSRWWLKHDVSR*GFRSI*HLC*V*YQWGD*GHQSWRAHVSSI*HNQRTYKTC*EDWQRPAEYKGG*AEKSETICS*PPFNEWIKDNLLSKF*KG*KAAGVFARRLNWCDK**EV*RFQAMALRNINF*YQISRVDSRAWHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSQFN*KRLGNG**LQSGKGW*IKKRRLGRCDL*SVS*ENCKPEGRPLRHF**GSTVPSRLY*PLSVDHTK*CFHFTCW*SLSKHI*LPKGSRNTGG*AE*YIEIT*G*VLQVQHXXXXXXXXXXXVQTAMSFQEGLHDCSIR*LCHLPQHA*LPFGSV*DLLRCDFGFKL*GEEDCAVLLWHEATHTNFWRINRVKLQIWWSFNFT*LIPH  1957
                R A E +AIN  S*R    R++LW+K  G+F   QRGL H*ED   F+  + +QG   I WQVE SQ  +L F IQ   ARL +  +C*L*+** *   C W*W L LAF  F   + W C + R+  FR +*   +S   SP+ F      CLCRE +D +ILH A  +A   H RI*  LE+    VA +WN +  +KS  T+   EWLHDHS+    W  *S C  LSV   H S+ * A+S     HDV  * F  +*HL *+*Y+W D*   S   +   +*HN   +K C*E+   P+E+K G*  + + I    PFNEW+ +NLL K * G*K A +FAR  NW  K**EV   + +A   I +*Y    +D RAW++W W +  VQE +E+V*  IRNLCF+Q   S+FN K   NG**LQS    *+K+ R+G  + *   *++C+ EG PL  F**G  V S ++  +   +T *CFHFTCW*S+SKHI*L KGS N G *AE*+    *G  + V H + EVCE NV ++TAMS Q+GL DC  R*LC+LP +A*L  G V   L C FGF+ *GE+D  VLLW+E  HT+ W IN V+ Q W + + T* + H
Subject   2980  RNASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRSLGCRFGFQF*GEKDSPVLLWNETAHTHIW*INWVEFQKWGNSHIT*FLSH  4854

Range 7: 3903 to 4871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
310.4 bits(671) 0.0 170/323(53%) 0/323(0%) Minus/Plus
Query       66  WMS*EE*NDLLLTSFQ*MDQR*LTFQVLKGLKSCRGVC*EA*LV**VMRSLTIPSHGSQEYQLLISNLES*QSCLAPLELVKAFCTRAL*RGLKANS*PLFHPEGL*PIQLKETWKWMIVAKWQRLVNQKKKVGTL*PLKCFLGKLQT*RQAIASFLMRFNCSLQAILTFVC*PYEVMLSFHLLVIPVKAHMTPKRIAQYWGLSRVIY*DYLRVSPTGTTLRVGGL*IQCLSPDCHVISRRAP*LQHSLIMPSSTTCMTSFWLGLRPP*MRFWFQALRRRRLCSLTLA*SNSH*LLANQQG*TSNMVEF*FHMTHSTLMTVDG  1034
                WM+    +D    SFQ*M  +* T Q L GLKSC+ VC* A*L  *VMRS  + + G   Y LLI +  +* SCL  L L +  CTR  *+GL+ NS*PLF P+ L* IQ K   KWMI AK  + V Q++K G  * L+  L KLQ *R A   FLMR +C L     + C  Y VMLSFHLLVI VKAHMT KRI Q+W LSRV Y D LR    G T + GGL* QC + DCHV S+RA *L  SLIM SS  CMT  W G + P M FWF  LRR+R  S TL *++SH  L NQ G* S M EF +HM   T M   G
Subject   3903  WMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVPWMPFWFPVLRRKR*SSPTLE*NSSHSHLVNQLG*ISKMGEFSYHMIPFTQMIGGG  4871

Range 8: 2964 to 3803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.3 bits(385) 0.0 123/280(44%) 0/280(0%) Minus/Plus
Query     1134  LYQSC*MCLGVRSNQ**FLKARLRSTPVMDQRFWDLSRCSKGTLTLRRLKMVPYS*YXXXXXXXXLAS*EFTRRSALFLDPRKCCSVVKSKPLLIMTLMTLTNSLYLVMVTVFGIQWVSC*VQMGLL*KQA*VLSLKVNLL*IHLCQPKPF*GSSVIMLMQRTK**PYSALGIM*G*SLSPQNMR*VGSLEIASGLCVESYACSQIIFNLVLH*MAA*SQLSPLRLVDVKWMFLTICAGPPQITYLKSCVKVVA*T*CISLRLSKHLTFVLSVISMGRLR  1973
                +Y   * CLG +SNQ  FLK       +M Q+ W L + SKGT TLRR + V + *  TR   D LA * FT ++A F DP++ C   + + +LIM LM LT SL LVM   FGI  V     M L *+    LS +V+  *+ + QP+ F  +   MLM R +*  YSA G  *G   S QNM+ VG+    SG  VE +A +QI  N   H*M A*SQ     L  VK M   IC  P  I +L+S V+  A T*CI L+L + LTF L+VI M RL+
Subject   2964  VYLRF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK  3803

Range 9: 3363 to 4394 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.1 bits(485) 0.0 153/344(44%) 0/344(0%) Plus/Minus
Query      543  EGTVEPHQK*RNGLPSGLQFS*ETLQRSQRPNLLFLIYQPLPLCNYHPFPSLF*LNWLEPFWVKQRLRICLQTSS*SSCTESFYQLQRCQARLSTLEI*YQKLIFLRAMAWNR*TXXXXXXXXXXXANTPAAFQPFQNLESKLSLIHSLKGGQEQIVSLFSAHPPLYSAGRCQSSQHVLYVRWLCQIELTCARQD**PQSPH*YHT*HKCQMLRKPQRDTSCLSHHLDTALQICDLWRACTDS*EHPLHVYQAQRR*L*SCSHSMEHKVENDLTASIRFHTEATRYLQTSNSPHILG***LASHDA*CRIRLSFRSLHKHYH*AASKRFGLTKMDLQEIHFQRK  1574
                E T  PHQK  +G PS LQ  *   Q+   P L  L Y    LC+YHPF   F*LN L+  W KQRLRI  QT S*+SCT +  Q Q  QAR S    *YQ  I+ +A   + *TSHHL  QL  LAN  A FQP Q+L S+L   HSLKG + +I    + HP L S G    SQH L    LCQ        D*  QS H YH * KCQ  +K Q +TSC     D A Q  D     TD+  H LH +Q  ++ L*SC+HS+   V +DL     FH  AT   + SN  HIL *   A   A CRI  S  S HKH      K  GL  +DL   H  RK
Subject   3363  EETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRK  4394

Range 10: 4425 to 4694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.9 bits(264) 0.0 56/90(62%) 0/90(0%) Plus/Minus
Query      243  TEPKGSHACCGRWHNQRMLQSWSPS*NDMAVWTQTLDSQTSDSQCCTCRTYPQVISIYHSAQPPVLRDPFGSHMCFDRDHQQVK*KHHFV  512
                T P  SHA  GR HNQR  QS SP *+DMAV  +TL SQTS   C T    PQ + + HSAQ P L DPF SHMCFD DHQQVK*KHH+V
Subject   4425  TSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV  4694

Range 11: 2979 to 3341 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 54/121(45%) 0/121(0%) Plus/Minus
Query     1596  QAHLYSTRNPLNAKNSYHHQVQGIC*SHQCHNQQRLRFDNRAALPWIQKKSTPSCELSTCQKISQEPCKISRIWNHLQSS*C*SPL*TPRKIPKPLVHNWCRSQARLQELLLIASYS*AHL  1958
                Q H    +N  NAK++ HHQ Q  C*+HQ HNQ   +  + A   WI+K S  +CE STCQ I   PC + +  N   SS*C SPL*  +K P  L HN       LQE  LIA  S A L
Subject   2979  QVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQEPKLIAFCSEAFL  3341

Range 12: 4752 to 4919 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 25/56(45%) 0/56(0%) Plus/Minus
Query       18  *CLPSPSCG*SAIGPSSIYGHQCGMSHVKLKLHHI*SLTLLIRQKLV*VASCQSKT  185
                *C P+P+CG*S I   +   H C  +HV  +  H *+ T LI Q  V*  S QS+T
Subject   4752  *CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AVSFQSRT  4919

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 15

Range 1: 3475 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
265.0 bits(572) 0.0 117/276(42%) 0/276(0%) Minus/Plus
Query      691  RQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  1518
                +QL +N +AE E +A FC  + ++L ++    E +W F   E      L  Q NHF+PC P+NGC+I AIASAL RREVDVL  L +P+   +F+E+ +G G ++  L+  FE F IC   D  GE+ ++N GGR+ A F +  EH+ H+  +     S  V +L RV  SA+  L+MNG++I Y PS +RA  L   L  G TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3475  KQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 2: 4363 to 4803 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 64/147(44%) 0/147(0%) Minus/Plus
Query      190  VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI  630
                V TFE+F+  + ++K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R+L G++Y++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F +   K     ++ S  E+K I
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEFSMMGRKDCPVVLVSSFEEKKII  4803

Range 3: 3193 to 3480 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.8 bits(170) 0.0 34/96(35%) 0/96(0%) Minus/Plus
Query     1528  IFVISYKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQ  1815
                + +   K  +   G+LR H+ EC  S   E L GC +  S  ++ D ++ F V  DGNCFWHSVG L+  DG  +K  +    + + +  P LS Q
Subject   3193  VVIAFLKPKMTQGGELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLSKQ  3480

Range 4: 3570 to 3911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 45/114(39%) 0/114(0%) Plus/Minus
Query     1082  CSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHRGHSLSPNFQLTS  1423
                CS    N A + PP L    SP +S L Q+   SK+  R  + KP P  +SSN     GL R  +TSTS    AEA+A++ QPF G QG K*   + K+     S   N Q+ S
Subject   3570  CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS  3911

Range 5: 4770 to 4988 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 33/73(45%) 0/73(0%) Plus/Minus
Query        2  STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETK  220
                S + P+ F K    L  DRAV HLRS V   S   +  P+ K  PVDSP V      P+    IFFSSKLET+
Subject   4770  SQVTPIPFIK*IS*LNLDRAVHHLRSLVKALS*VTRIAPF*KLRPVDSP*VMHFILRPRCAAIIFFSSKLETR  4988

Range 6: 4167 to 4280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 21/38(55%) 0/38(0%) Plus/Minus
Query      713  ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVN  826
                AR LLGETKV   P D  +  L R+LLP PKVP    N
Subject   4167  ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITN  4280

Range 7: 4506 to 4727 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 32/74(43%) 0/74(0%) Plus/Minus
Query      266  MLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPA  487
                ML +   S+++ V     K HGSL +  GF N  L ML L* LP + L +SL     I  S   S  L*QGSPA
Subject   4506  MLSQSVYSSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA  4727

Range 8: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      527  RSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTT  631
                +SI PGG S* SS  T WP+   +     +SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Range 9: 3957 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 19/45(42%) 0/45(0%) Plus/Minus
Query      902  TPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSSST  1036
                TPV P SK      A S  G * I  PFI R   A   T   S T
Subject   3957  TPVAPSSKLSSKVEARSMDGL*SISAPFIARNLMALFDTRFRSDT  4091

Range 10: 4768 to 4983 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 39/72(54%) 0/72(0%) Minus/Plus
Query        7  ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGIS  222
                +LVSSFEEKKI+ ++ G+K   +T+GESTGLNF+ G +L++++S  T DRRW TALSRFSH++  +N  G++
Subject   4768  VLVSSFEEKKIIAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVT  4983

Range 11: 4182 to 4307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 15/42(36%) 0/42(0%) Minus/Plus
Query      686  WHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSQFN*KRLGN  811
                W+ W W*K S Q+++ ++ R+  +LCF++K S + + + LG+
Subject   4182  WNFWLW*KFSFQKIH*KITRKGNHLCFSKKISCRIHQQ*LGS  4307

Range 12: 3348 to 3386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.5 bits(45) 0.0 10/13(77%) 0/13(0%) Minus/Plus
Query     1622  CTW*W*LFLAFSG  1660
                C  *W*LFLAF G
Subject   3348  C*C*W*LFLAFCG  3386

Range 13: 4372 to 4680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 29/103(28%) 0/103(0%) Plus/Minus
Query      313  LLEMTWQSGLKHWIHKPPTLNVVPVGLTLK*SQYITLLSPQYCAILLGVICALTGITSK*NESITSYGQQTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFK  621
                L+++ WQ   ++ I +  T NV  +G   +    + L + +   I   +I  LTGI       I    +  ++NI  RE+LNLI ++ MA         K FK
Subject   4372  LIQIAWQPPNENRISESLTQNVKFIGPATQYPHNVALATSKNMPIRTTIIVTLTGIPGNYYIDILLQPKNYQINIPRREELNLINDNCMALFDTIQVQDKEFK  4680

Range 14: 3348 to 3419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 15/24(62%) 0/24(0%) Plus/Minus
Query     1589  FKASPSVLNKKPTECQKQLPSPGT  1660
                F  SPS   + PTECQKQLPS  T
Subject   3348  FMHSPSTPIRGPTECQKQLPSAST  3419

Range 15: 4768 to 4983 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.1 bits(66) 0.0 20/72(28%) 0/72(0%) Plus/Minus
Query        7  ADASNVYQVQVVAKAR*GRHPSTVISVE*VM*N*NSTIFEV*PC*FAKS*CELLHAKVRLHNLLLLKA*NQN  222
                +D  ++Y++ ++ K  *   P  V     ++ + NS + ++   *   S       K+R +N   LKA*NQN
Subject   4768  SDPHSIYKMNIMTKPG*SSPPPAVAG*STLISHENSPLLKIKTS*LTISDALHFKTKMRCNNFFFLKA*NQN  4983

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 12

Range 1: 3471 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
258.1 bits(557) 0.0 114/276(41%) 0/276(0%) Minus/Plus
Query      691  RQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  1518
                +QL  N +AE E +A FC  + +RL ++    E +W F   E      L  Q NHF+PC P+NGC+I AI+SAL RREVDVL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GR+ A F +  EH+ H+  +     S  V +L RV  SA+  L++NG+++ Y PS +RA  L      G TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3471  KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 2: 4359 to 4793 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 63/145(43%) 0/145(0%) Minus/Plus
Query      196  VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEK  630
                V TFE+F+  + ++K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G+SY++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F +   K     ++ S  E+K
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEKK  4793

Range 3: 3189 to 3476 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 37/96(39%) 0/96(0%) Minus/Plus
Query     1528  IFVISYKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQ  1815
                I +   K  +   G+LR H+ EC  S   E L GC +  S  ++ D F+ F V  DGNCFWHSVG L+  DG  LK  +    + + +  P LS Q
Subject   3189  IMLAFLKPKMTLGGELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLSKQ  3476

Range 4: 4347 to 4733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 37/129(29%) 0/129(0%) Plus/Minus
Query      256  EVMHVVEDGIISECCSHGALLEMTWQSGLKHWIHKPPTLNVVPVGLTLK*SQYITLLSPQYCAILLGVICALTGITSK*NESITSYGQQTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFKGHNVPTF  642
                E+++ V   ++    S   L+E+  QS +KHWI +P T ++  V    + S  IT  + +   I   VI  LT +TS  N  I    +  ++ IAWR++LN I ++++  L       + FK  +   F
Subject   4347  ELLYTVPKSVLLLI*SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFDTHIF  4733

Range 5: 4748 to 4984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 35/79(44%) 0/79(0%) Plus/Minus
Query        2  STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETKIASKEV  238
                S + P+   K    L  +RAV   RS V   S   K  P+ KFNPVDSP V    F P+*  TIFFSSKLET    + +
Subject   4748  SQVTPMPLMK*MS*LNLERAVHQRRSLVRALSYVTKIAPFWKFNPVDSPYVIHFIFRPR*AATIFFSSKLETSTTGQSL  4984

Range 6: 3632 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 38/92(41%) 0/92(0%) Plus/Minus
Query     1082  CSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*  1357
                CS    N A + P  L    SP +S L Q+   S    R  M KP P  +SS      GL    +TSTS   SAE IA+I  PF G QG K*
Subject   3632  CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*  3907

Range 7: 3251 to 3415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 23/55(42%) 0/55(0%) Plus/Minus
Query     1589  FKASPSVLNKKPTECQKQLPSPGTGNLLKXXXXXXXXXXI*QPSSTSLDPEKEHS  1753
                FK SPS     PTECQKQ PS  T    K S S         P S S+  +  HS
Subject   3251  FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHS  3415

Range 8: 4163 to 4276 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 16/38(42%) 0/38(0%) Plus/Minus
Query      713  ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVN  826
                A  LLGETKV   P D  +  L ++L P P VP   ++
Subject   4163  ASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIIS  4276

Range 9: 4764 to 4979 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 40/72(56%) 0/72(0%) Minus/Plus
Query        7  ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGIS  222
                +LVSSFEEKKIV ++ G+K   +T+GESTGLNF+ G +L++++S  T DRRW TALSRFSH++  +N  G++
Subject   4764  VLVSSFEEKKIVAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVT  4979

Range 10: 4504 to 4689 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 22/62(35%) 0/62(0%) Minus/Plus
Query      300  LVIPVKAHMTPKRIAQYWGLSRVIY*DYLRVSPTGTTLRVGGL*IQCLSPDCHVISRRAP*L  485
                LV  VK  MT  +I     + +VI *++     T +   V G  IQC + DC   S R  *L
Subject   4504  LVTLVKVIMTAAQIGTSLLVVKVIS*EFSAGEVTSSIS*VRGSGIQCFTADCLATSIRPD*L  4689

Range 11: 4502 to 4729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 31/76(41%) 0/76(0%) Plus/Minus
Query      260  SCMLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPA  487
                SC+L +   S+++ V    L+  G+L  N GF NL L +L L*  P   L ISL     +  S  +S  L*QGSPA
Subject   4502  SCILSQRVYSSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA  4729

Range 12: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 17/35(49%) 0/35(0%) Plus/Minus
Query      527  RSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTT  631
                +SI*PGG S* SS  T  P+   +    N SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 11

Range 1: 3472 to 4299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.0 bits(561) 0.0 115/276(42%) 0/276(0%) Minus/Plus
Query      691  RQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  1518
                +QL  N +AE E +A FC  + +RL ++    E +W F   E      L  Q NHF+PC P+NGC+I AIASAL RREVDVL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GR+ A F +  EH+ H+  +     S  V +L RV  SA+  L++NG++I Y PS +RA  L      G TGV+        K   + +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3472  KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4299

Range 2: 4360 to 4800 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 64/147(44%) 0/147(0%) Minus/Plus
Query      190  VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI  630
                V TFE+F+  + ++K GH V+ DE+QLFPPGYIDL +L +     I +AGDPCQS YDS  DR I    +SDI+R L G+SY++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F +   K     ++ S  E+K +
Subject   4360  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEKKVV  4800

Range 3: 3208 to 3477 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 36/90(40%) 0/90(0%) Minus/Plus
Query     1528  KAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQ  1797
                K  +   G+LR H+ EC  S   E L GC +  S  ++ D F+ F V  DGNCFWHSVG L+  DG  LK  +      + +  P LS Q
Subject   3208  KPKMTLGGELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKKILHDQALKDGVKCPRLSKQ  3477

Range 4: 3636 to 3917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 37/94(39%) 0/94(0%) Plus/Minus
Query     1073  CLICSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K  1354
                C  CS    N A + P  L    SP +S L Q+ N S +  R  + KP P  +SS      GL    +TSTS   SAEAIA++  P  G QG K
Subject   3636  CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLK  3917

Range 5: 4770 to 4985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 31/72(43%) 0/72(0%) Plus/Minus
Query        2  STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLET  217
                S + P+ F K    L  DRAV   RS V   S   +  P+ K  PVDSP V      P+   T FFSSKLET
Subject   4770  SHVTPMPFMK*IS*LNLDRAVHQRRSLVRALS*VTRIAPF*KLRPVDSPYVIHFILRPRCAATTFFSSKLET  4985

Range 6: 4158 to 4277 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 18/40(45%) 0/40(0%) Plus/Minus
Query      713  ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSR  832
                A  LLG+TKV   P D  +  L R+L P P VP   +N R
Subject   4158  ASDLLGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIINFR  4277

Range 7: 4503 to 4724 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 31/74(42%) 0/74(0%) Plus/Minus
Query      266  MLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPA  487
                ML +   S+++ V     K  GSL   IGF NL L ML L*  P   L +SL     I RS   S  L  GSPA
Subject   4503  MLSQRVYSSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA  4724

Range 8: 4359 to 4463 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 17/35(49%) 0/35(0%) Plus/Minus
Query      527  RSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTT  631
                RS+*PGGNS* SS  T  P+   +    N S V T
Subject   4359  RSM*PGGNS*ISSMTTV*PSLMLSRCKMNNSNVLT  4463

Range 9: 3954 to 4088 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 19/45(42%) 0/45(0%) Plus/Minus
Query      902  TPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSSST  1036
                TPV P SK      A S  G * I  P I +   A   TLL S T
Subject   3954  TPVAPNSKLSSKVDARSIEGL*SISAPLIAKNLIALFETLLRSET  4088

Range 10: 4765 to 4980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 39/72(54%) 0/72(0%) Minus/Plus
Query        7  ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGIS  222
                +LVSSFEEKK+V ++ G+K   +T+GESTGLNF+ G +L++++S  T DRRW TALSRFSH++  +N  G++
Subject   4765  VLVSSFEEKKVVAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVT  4980

Range 11: 4158 to 4268 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 12/37(32%) 0/37(0%) Minus/Plus
Query      722  SRVDSRAWHLWSW*KLSVQELYEEV*RQIRNLCFTQK  832
                S +D+    +W W K S+ +++ EV R+  NLC  ++
Subject   4158  SEIDNDLGDIWMWEKFSL*KIH*EVPRKGYNLCIAKE  4268

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 14

Range 1: 3305 to 4030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.1 bits(437) 0.0 87/242(36%) 0/242(0%) Minus/Plus
Query      814  LSAQTVLRQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVV  1539
                ++ + +LRQ+S + +AE E +A FC  + ++L +++    V+W F  ++      L  Q NHF PC P+NGC++ AIASALGRRE+DVL  L +P    ++E+ C G G  +  L   FE F I A+ D  G +  +N  G++SA F +  EH+ H++++     S  + +L  V +SAL LL +NGS+I+Y PS +RA+ L   L  G TGV+  E +N  +  + G+  +  + +  T++
Subject   3305  ITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII  4030

Range 2: 4208 to 4648 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.0 bits(356) 0.0 72/147(49%) 0/147(0%) Minus/Plus
Query      190  VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI  630
                V+TFE+FL  IA++K GH VI DE+QLFPPGY+DL L+   SD  + LAGDPCQS YDS+ DR +     SDI+ +L GKSYRYNI S+RF NP+F SRLPC      +T    +Y ++ ++  F LA  K     ++ S  E+K +
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTLWDSITQFELAGGKNFPVVLVSSFEEKKVV  4648

Range 3: 3059 to 3271 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 34/71(48%) 0/71(0%) Minus/Plus
Query     1588  YKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALK  1800
                YK  +    +LR H  EC  S   E L GC +  S  ++ D+F+ F VPGDGNCFWHSVG L+  DG+ LK
Subject   3059  YKPRLGKGMQLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLK  3271

Range 4: 4030 to 4110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 11/27(41%) 0/27(0%) Minus/Plus
Query      731  WHLWSW*KLSVQELYEEV*RQIRNLCF  811
                W+LW W*+ S+ E++ ++ R+  N CF
Subject   4030  WYLWMW*EHSI*EVHIKITRKSYNFCF  4110

Range 5: 4624 to 4698 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 12/25(48%) 0/25(0%) Minus/Plus
Query      137  KL*GEEDCAVLLWHEATHTNFWRIN  211
                KL*GEE C      E    NFW +N
Subject   4624  KL*GEEGCCCTPRIENEVPNFWGVN  4698

Range 6: 4603 to 4794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 34/64(53%) 0/64(0%) Plus/Minus
Query       41  WLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETKIASK  232
                WL R+RAV HL S V   S + K  P+ KF PVDSPKV    F P+   T FFSSKLET+   K
Subject   4603  WLNRERAVNHLLSLVRELS*DTKIAPF*KFRPVDSPKVRHFIFNPRCAATTFFSSKLETRTTGK  4794

Range 7: 3487 to 3762 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 37/92(40%) 0/92(0%) Plus/Minus
Query     1082  CSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*  1357
                CS    N AD+ P  L     P  S LA + N S + +R    KP P  +SS      GL +  RTS S LP A+AIA+  QP  G  G K*
Subject   3487  CSFSKENSADIFPSSLRQIKLP**SSLALIENISNSLSRS*TQKPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*  3762

Range 8: 4207 to 4365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 27/53(51%) 0/53(0%) Plus/Minus
Query      473  QGSPASEMKASLRMVNRQRSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTT  631
                QGSPA     S  +  R RS *PGG S* SS +T  P    AI +RN+SKV+T
Subject   4207  QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST  4365

Range 9: 4030 to 4128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/33(61%) 0/33(0%) Plus/Minus
Query      713  ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVP  811
                AR LLGETKV   P D  +  L R LLP PKVP
Subject   4030  ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP  4128

Range 10: 3199 to 3288 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 16/30(53%) 0/30(0%) Plus/Minus
Query     1571  KELMPAFKASPSVLNKKPTECQKQLPSPGT  1660
                + L   F   PS     PTECQKQ PSPGT
Subject   3199  RSLRMPFNKIPSTPISGPTECQKQFPSPGT  3288

Range 11: 3814 to 3954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 20/47(43%) 0/47(0%) Plus/Minus
Query      890  SSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSS  1030
                S+ ITPV P  +   S  ALS  G+* I DP I R   A   T+  S
Subject   3814  SAHITPVVPAWRLLASV*ALSMEGE*EISDPLIIRSFSALLLTVWRS  3954

Range 12: 4613 to 4813 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 39/67(58%) 0/67(0%) Minus/Plus
Query       22  ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVN  222
                +LVSSFEEKK+V ++ G+K   LTFGESTGLNF+ G + +S++S  T +RRW+TALSRFSH +  +N
Subject   4613  VLVSSFEEKKVVAAHLGLKMKCLTFGESTGLNFQKGAIFVSYESSLTSERRWLTALSRFSHEIHFIN  4813

Range 13: 3995 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 32/68(47%) 0/68(0%) Minus/Plus
Query      643  SDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKK  846
                ++I  R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +  + K    GK  K
Subject   3995  ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 14: 4215 to 4403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 20/63(32%) 0/63(0%) Minus/Plus
Query      435  PLKCFLGKLQT*RQAIASFLMRFNCSLQAILTFVC*PYEVMLSFHLLVIPVKAHMTPKRIAQY  623
                PL CFL +    R+     LMRF+ SL  IL        +  +  LL IP K     + I  +
Subject   4215  PLSCFLWE*LPLRRGTR*SLMRFSSSLLVILISFWSALALTSTLFLLEIPAKVTTIARMIVTF  4403

Nucleotide Sequence (803 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
81
162
243
324
405
486
567
648
729
803

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
590.3 2416.6 33% 7.266e-168 66% NC_001948
176.1 336.2 24% 2.588e-54 36% NC_009892
128.0 335.4 26% 6.388e-48 41% NC_003462
127.1 303.6 24% 3.05e-47 41% NC_018714
126.6 298.6 35% 1.99e-46 38% NC_014821

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 6434 to 7207 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
590.3 bits(1282) 0.0 246/258(95%) 0/258(0%) Minus/Plus
Query       29  EMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVVD*ALSIWRCSSIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAA  802
                EMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE +D*ALSIW   SIMNNLVKALSAFEF+GVFSVLKFPVVIHSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGRYIK YSPGCAV GKVNILDEYLSVQD SGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLD VIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAA
Subject   6434  EMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAA  7207

Range 2: 6694 to 6969 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 81/92(88%) 0/92(0%) Plus/Minus
Query      267  EERYLQVFTPNLQVLDLMKCASLGILIFWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKLSSSEINS  542
                EERYLQVFTPNLQV DLMKCASLG+L+FWYGSENSTSKPE S TDKYSSSI TFP TAHPGE* LMYLPVRLGLSGTPAVKA K SSSEI+S
Subject   6694  EERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISS  6969

Range 3: 7018 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 61/63(97%) 0/63(0%) Plus/Minus
Query       30  AAM*NQCLSSGVGSLDFKRVTTLKVEPLTSHGNLNSELCATARSTASLPKHISTPSTSRVKGD  218
                AAM*NQCLSSGVGSLDFKRVTTLKVEPLTS GNLNSELCATARSTASLPKHISTPSTS VKGD
Subject   7018  AAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGD  7206

Range 4: 6433 to 6642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.9 bits(275) 0.0 61/70(87%) 0/70(0%) Plus/Minus
Query      594  NLSTLKTPINSKADNALTKLFIILEQRQILKA*STTSNRPEIEHLILCLFLTRNLTQL*CASTSSSVIIS  803
                NLSTLKTP NS ADNALTKLFIIL+  QILKA*S  SNRPEIEHLILCLFLT+NLTQL* ASTSSSVIIS
Subject   6433  NLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIIS  6642

Range 5: 6434 to 7204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
379.1 bits(821) 0.0 171/257(67%) 0/257(0%) Plus/Minus
Query       32  SDVKPVPVLWGWVS*FQKGYHIEG*TSNLTRQLEFRVVRNSEIYRLLAKTYQHPLNI*SEGRSHNDVVQPVAANFETERGKVFASVHTKPTSLGLNEMRLFGNTDILVRV*KQYIKT*NVLNRQVLIKYIHFPLHCASW*VMLDVPPCEVRTVWNTSCESHETLVL*D*LPYXXXXXXXXXXMYNNWKFEHTENTYKLEG*QCFN*IIHNTRTTPNT*GLINHFKQA*N*APHFMLVPNQEPHTIVVCLHLLFCHHF  802
                S+VKPVP+LWGW+S*FQK Y ++ *TSN TR  EFRVVRNSEI+ LL K Y HP NI* + R HND VQ V AN +TE GK+FAS+H KPTS  L+EM LF N D+LV V +Q+IKT* +L+ QVLIKYI+FP HC  W + L+VP CE+R VWNT CES+E L+L +*LPY*TT TTTRHTM + WKF+HTENTYKL+ *QCFN*IIHNT+  PNT*GLIN FK A*N*A H MLVP+QE +TI++ LH    HHF
Subject   6434  SNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHF  7204

Range 6: 6433 to 7206 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
375.4 bits(813) 0.0 175/258(68%) 0/258(0%) Minus/Plus
Query       30  *NDDRRGGGGTLQLCEVPG*EQA*NEVLNFRPV*SG*LGLKYLALFEYYE*FS*SIVSLRVYRCFQCAQISSCYT*CAW*W*E*FNKGVNLRGREFRGFHSWCSRQS*PHREVHQALLTRMRSARESEYT**VLVCSRHFRF*CTVFRPVPEYQYSQRGAFH*VQDL*VWCEHLQIPFLFRFQS*QRRAGRRHCGIALHSRC*GGADMFWQGGGRSRCCAQL*IQVAV*G*RFNLQCGNPFEIKRPNPRGQALVLHRC  803
                *NDDR   GG L LC + G EQA*+E+LNFRP+*S *LGLKYLALFEYYE*FS*SIVS+ V RCFQCA ISS ++*CAW*W*+*FNKG N RG EF  FHS CSRQ * HR+VH AL +R+ SARES YT**VLV  R FRF*C V  P+P++Q+S RG FH V++L*VW E+LQI FL RF  *Q R G+ HCG+A ++RC* GA+M W GG  SRCCAQL*IQ+ +* *RFN    N FEIKR NPRG ALVLH C
Subject   6433  *NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF*G*Q*RFGQSHCGVAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCC  7206

Range 7: 6435 to 6971 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
230.2 bits(496) 0.0 125/179(70%) 0/179(0%) Plus/Minus
Query      265  KRKGICKCSHQTYKSWT**NAPLWEY*YSGTGLKTVHQNLKCLEQTSTHQVYSLSLALRILVSNA*CTSL*G*DCLEHQL*KPRNSRPLRLTPLLNYSYHYQAHYV*QLEI*AH*KHXXXXXXXXXXXNYS*YSNNAKYLRPNQPLQTGLKLSTSFYACS*PGTSHNCSVPPPPLLSSF  801
                +RK ICK S QTYK  T**N PL E *  G G +T HQNLK L +TSTHQVY LSLAL  L + A*CT L* * CLEH L*K  NS P +L PLLNY YHYQAHY * LEI*AH*KHL T+ LTML*LNYS*YSNNAKYLRPNQ LQ GLKLS S YACS*P   HN + PP    SSF
Subject   6435  RRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSF  6971

Range 8: 7032 to 7217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 42/62(68%) 0/62(0%) Plus/Minus
Query       19  CLVGQRCKTSACPLGLGLLISKGLPH*RLNL*PHTAT*IQSCAQQRDLPPPCQNISAPPQHL  204
                C++ Q+CKTSA PLGL LLISK L  *+LNL* H   *IQSCAQQRD  PP Q+I AP QHL
Subject   7032  CVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHL  7217

Range 9: 6435 to 7217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.2 bits(638) 0.0 172/261(66%) 0/261(0%) Minus/Plus
Query       19  K**QKRRWRHTTIV*GSWLGTSIK*GAQFQACLKWLIRP*VFGVVRVL*II*LKHCQPSSL*VFSVCSNFQLLYIVCLXXXXXXX*GS*SQRTRVSWLSQLVFQTVLTSQGGTSSITHQDAQCKGK*IYLMSTCLFKTFQVLMYCFQTRTRISVFPKRRISLSPRLVGLV*TLANTFPLSVSKLAATGWTTSLWDRPSL*MLRGC*YVXXXXXXXXXXXXXLNSSCRVRLEVQPSMW*PF*NQETQPQRTGTGFTSLPNQT  801
                K** +++WR   IV  SW GTSI+* AQFQA LK LIRP*VFG++ VL*II*LKHCQ  SL*VFSVC NFQ  +IVCLVVV+VV**GS*  R R+S LSQ VFQT L SQ GT S+  Q  QC+GK IYLMSTC  K FQVLM C +T T+ S F KR IS S +LVGL * LAN FP SV +LA T WT SLW R   *ML+GC*Y L RR+ ISLLRTTLNS+  V+LEVQ    * F*NQE QPQR GTGFT L   T
Subject   6435  K**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDT  7217

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 5

Range 1: 6485 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 80/195(41%) 0/195(0%) Minus/Plus
Query       80  SIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLL  664
                ++M+ +V  L  + F      ++  +++H+VPGSGK++LIRE ++ +    AF+ G PD PN+ GRYIK    G    G   ILDEYLS +  +GFD  FSDP+QN      AHF+   + RFG NT   L S G+ V+S   D++I  + F  ++EG +IC  K   D    ++ E++LPC+VRGSTF VVT +
Subject   6485  NVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 2: 6338 to 6439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 18/34(53%) 0/34(0%) Minus/Plus
Query      695  MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVV  796
                ++EEE++AHYNCVRF+V++ H ++CS+S LF  +
Subject   6338  LSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI  6439

Range 3: 6340 to 6426 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 18/29(62%) 0/29(0%) Plus/Minus
Query      708  RPEIEHLILCLFLTRNLTQL*CASTSSSV  794
                R E EH      LT NLTQL*CAS SSS+
Subject   6340  RSETEHFRRWECLTMNLTQL*CASISSSL  6426

Range 4: 6937 to 7065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 16/43(37%) 0/43(0%) Plus/Minus
Query       84  RVTTLKVEPLTSHGNLNSELCATARSTASLPKHISTPSTSRVK  212
                +VTT KVEP T  G+L S+     +S+      ++ PS+S +K
Subject   6937  KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALK  7065

Range 5: 6634 to 6792 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 19/53(36%) 0/53(0%) Plus/Minus
Query      357  GSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKAT  515
                GSE   S P  +  ++YSSS+   P    P     M  P   G SG+P  KA+
Subject   6634  GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKAS  6792

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 6

Range 1: 6705 to 7142 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
128.0 bits(273) 0.0 60/146(41%) 0/146(0%) Minus/Plus
Query      227  SIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDV  664
                SIM  ++  L+ F F      L  P+V+H+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS +  +GF+ LFSDPYQN      AHFI   + RFG  T + L   G+ ++S   D V
Subject   6705  SIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIV  7142

Range 2: 7167 to 7301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 19/45(42%) 0/45(0%) Minus/Plus
Query       71  LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR  205
                ++ EGV+IC  K   D    H+ E+K PC+VRG+TF++VT +  +
Subject   7167  IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK  7301

Range 3: 6489 to 6584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.3 bits(99) 0.0 16/32(50%) 0/32(0%) Minus/Plus
Query      701  MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  796
                +T +EV+AHYNCVRF+V++ H ++ +I  LF+
Subject   6489  LTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK  6584

Range 4: 6848 to 7021 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 24/58(41%) 0/58(0%) Plus/Minus
Query      348  FWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKL  521
                FW GSE     P     DKYSS +   P    P    L+Y+P  L  SGTP V A+ L
Subject   6848  FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASIL  7021

Range 5: 7169 to 7285 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 18/39(46%) 0/39(0%) Plus/Minus
Query       87  VTTLKVEPLTSHGNLNSELCATARSTASLPKHISTPSTS  203
                VT  KV P T  GNL S LC   +S+    + I TPS S
Subject   7169  VTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGS  7285

Range 6: 6498 to 6551 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 9/18(50%) 0/18(0%) Plus/Minus
Query      734  MLVPNQEPHTIVVCLHLL  787
                M++ + E HTIV+ +HLL
Subject   6498  MIMLHNETHTIVMSIHLL  6551

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 5

Range 1: 6676 to 7110 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 59/145(41%) 0/145(0%) Minus/Plus
Query      227  IMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDV  661
                IM  ++  L+ F F      L  P+V+H+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS +  +GF+ LFSDPYQN      AHFI   + RFG  T + L   G+ ++S   D V
Subject   6676  IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIV  7110

Range 2: 7135 to 7269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 19/45(42%) 0/45(0%) Minus/Plus
Query       71  LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR  205
                +D EGV+IC  +   D    H+ E+KLPC+VRG+T+++VT +  +
Subject   7135  VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK  7269

Range 3: 6490 to 6582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 15/31(48%) 0/31(0%) Minus/Plus
Query      704  MTEEEVEAHYNCVRFLVRNKHKMRCSISGLF  796
                ++ +EV+AHYNCVRF+V++ H ++ +I  LF
Subject   6490  LSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF  6582

Range 4: 6816 to 6989 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 25/58(43%) 0/58(0%) Plus/Minus
Query      348  FWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKL  521
                F YGSE    KP     D+YSS I  FP    P    LM +P     SGTP V A+ L
Subject   6816  F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML  6989

Range 5: 7137 to 7253 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 17/39(44%) 0/39(0%) Plus/Minus
Query       87  VTTLKVEPLTSHGNLNSELCATARSTASLPKHISTPSTS  203
                VT   V PLT  G+L S LC   +S+    + I TPS S
Subject   7137  VTMSYVAPLTWQGSLYSTLCHLRKSSTLSSRQIITPSGS  7253

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 5

Range 1: 6671 to 7105 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.6 bits(270) 0.0 59/145(41%) 0/145(0%) Minus/Plus
Query      227  IMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDV  661
                IM  ++  L+ F F      L  P+V+H+VPGSGK++LI++ +  + +  A T GVP+  N+ G YIK    G   +G  +ILDEYLS +  +GF+ LFSDPYQN      AHFI   + RFG  T + L + G+ ++S   D V
Subject   6671  IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIV  7105

Range 2: 7130 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query       71  LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR  205
                ++ EG +IC  KE  D    H+ E+KLPC+VRG+TF+ VT +  +
Subject   7130  VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 3: 6493 to 6585 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 13/31(42%) 0/31(0%) Minus/Plus
Query      704  MTEEEVEAHYNCVRFLVRNKHKMRCSISGLF  796
                ++  E++AHYNCVRF++ + H ++ +I  LF
Subject   6493  LSPHEMDAHYNCVRFIILHNHLLKSNIKDLF  6585

Range 4: 6811 to 7038 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 29/76(38%) 0/76(0%) Plus/Minus
Query      294  PNLQVLDLMKCASLGILIFWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKL  521
                PNL     MK A      FW GSEN   KP     D+YSS +   P    P    L+ +P     SGTP V A+ L
Subject   6811  PNLCEQRPMKWARRQSP*FW*GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTASIL  7038

Range 5: 6502 to 6555 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 9/18(50%) 0/18(0%) Plus/Minus
Query      734  MLVPNQEPHTIVVCLHLL  787
                ++V N EPHT+V+ +HL+
Subject   6502  VIVQNDEPHTVVMSIHLM  6555

Nucleotide Sequence (413 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
42
84
126
168
210
252
294
336
378
413

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
197.2 802.1 22% 6.432e-50 48% NC_001948

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 1730 to 2119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
197.2 bits(427) 0.0 88/130(68%) 0/130(0%) Plus/Plus
Query        3  EVQNSYKVGLFKHIKALTYCFNSCGLQWFLLRRRSNLKFLKDGASSFANLSCEVIKAYKSVVLQATLPEALLSLTKVFIRDSDLNDVFTSELISNDESVGLVCSAGSTSEKSQSVNCEASRVPVSSSSTQ  392
                EV++SYKVGLFKHIKALT+CFNSCGLQWFLLR+RSNLKFLKD ASSFA+L CEVIK Y+ V  QA LPEALLSLTKVF+RDSD   V    L+S +E   L   A S  E+ QSV+C A RV  S SS+Q
Subject   1730  EVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSSQ  2119

Range 2: 1729 to 2118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.7 bits(316) 0.0 87/130(67%) 0/130(0%) Minus/Minus
Query        2  WVLEELTGTLLASQLTDCDFSEVEPAEQTSPTDSSFEINSEVKTSFRSESLMKTLVRLSRASGRVACNTTDL*ALITSQLRLAKDDAPSFXXXXXXXXXXXNHWRPQELKQ*VRAFMCLKRPTL*EFWTS  391
                W LE L  TL A Q TD   S  E A   S + S  E N  ++T F SESL KTLV+LSRASG +AC+ T  * LITSQ R AKDDA SFRNLRLDL LRRNHWRPQELKQ*VRAFMCLKRPTL*E  TS
Subject   1729  WELETLA*TLPALQSTD*GSSRAELAG*ASSSSSFLETNLGMETPFESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTS  2118

Range 3: 1728 to 2126 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.2 bits(269) 0.0 70/133(53%) 0/133(0%) Plus/Plus
Query        1  VRSKILTKWVFLST*KPSLIVSILVVSNGSFLGEGPTSSF*KMEHRPLLILVVRLSRPTSLLCYRQPSLKLC*A*LKFS*EILI*MMFSPLN*SQMMSQSDWFVQQVQPLRNHSQSIVRLAEFQ*ALQAPSCL  399
                VR ++  +W FLST*KPSLI  ILV SNGS LG+GPTS+F*+  HRPLLIL+VRLS+  SL  +RQ  L+LC A* K    IL   +F   + S+ MS  +   Q +QPLR+ +Q IV  A F+ A Q PS L
Subject   1728  VRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSLSGILTQRVFPFPDWSREMS*RN*LTQLIQPLRSLNQLIVMQAGFKQAFQVPSSL  2126

Range 4: 1745 to 1990 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.1 bits(247) 0.0 49/82(60%) 0/82(0%) Minus/Minus
Query       18  NII*IRISYENFS*A*QSFREGCL*HNRLVGLDNLTTKISKGRCSIFQKLEVGPSPKKEPLETTRIETISEGFYVLKKTHFV  263
                N +*+RI  ++F  A QS R+ CL*  +L+  DNLT KISKGRC + QK EVGP PK+EPLE TRI+ +SEGFYVLKK H +
Subject   1745  NTL*VRIPDKDFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLI  1990

Range 5: 1729 to 1923 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 47/65(72%) 0/65(0%) Plus/Plus
Query        2  *GPKFLQSGSF*AHKSPHLLFQFLWSPMVPS*AKVQPQVSERWSIVLC*S*L*GYQGLQVCCVTG  196
                *G KFL  G F*AHKSPH L  FLW PMVP *AKVQPQ+SE   IVLC*S*L*GYQ L  C +TG
Subject   1729  *G*KFL*GGPF*AHKSPHSLL*FLWPPMVPP*AKVQPQISEGQGIVLC*S*L*GYQSLSACNITG  1923

Range 6: 1728 to 1922 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 44/65(68%) 0/65(0%) Minus/Minus
Query        1  PVTQQTCRP**PHN*D*QRTMLHLSET*GWTFA*EGTIGDHKN*NNK*GLLCA*KDPLCKNFGPH  195
                PV  Q  + **PHN D QRTM   SE *GWTFA* GTIG HKN*+N+*GLLCA*K P  +NF PH
Subject   1728  PVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN*SNE*GLLCA*KGPPYRNF*PH  1922

Range 7: 1916 to 1990 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 12/25(48%) 0/25(0%) Minus/Minus
Query      189  NII*IRISYENFS*A*QSFREGCL*  263
                N +*+RI  ++F  A QS R+ CL*
Subject   1916  NTL*VRIPDKDFGQAKQSLRKYCL*  1990

Nucleotide Sequence (443 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
45
90
135
180
225
270
315
360
405
443

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
323.6 1005.1 19% 6.287e-88 51% NC_001948
122.0 308.5 38% 2.356e-48 51% NC_008020
107.8 248.8 28% 3.716e-43 55% NC_018175
111.5 323.8 20% 1.793e-42 42% NC_010538
107.8 304.9 17% 7.698e-44 42% NC_031089

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 8

Range 1: 6329 to 6769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
323.6 bits(700) 0.0 131/147(89%) 0/147(0%) Plus/Plus
Query        2  WERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR  442
                WERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVG++SVL+FPVV+HSVPGSGKSSLIREL++EDE+FIAFTAGVPD+PNL+GR
Subject   6329  WERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGR  6769

Range 2: 6328 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
158.7 bits(340) 0.0 77/98(79%) 0/98(0%) Minus/Minus
Query        1  PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQ  294
                PTNSN D ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS  A*+TSIA*LS+QFSRLPIS AM I SQ
Subject   6328  PTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQ  6621

Range 3: 6706 to 6768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 18/21(86%) 0/21(0%) Minus/Minus
Query      379  LPERLGVSGTPAVKAMKLSSS  441
                LP RLG+SGTPAVKAMK SSS
Subject   6706  LPVRLGLSGTPAVKAMKFSSS  6768

Range 4: 6329 to 6769 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
163.3 bits(350) 0.0 77/147(52%) 0/147(0%) Minus/Minus
Query        2  PPREVGSVGNAGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*IIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCLNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLP  442
                P  E+ +V N   + YE L+L +   Y*TTFTTTR+ MN+ WK +H  NT+KLK  Q FN*IIHN   MPNT*GLI SFK   N*A HL+L+ + E +T+++ L+F   HHFN  L+Q V IG L  I++N +LQV H  SNA  LP
Subject   6329  PSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLP  6769

Range 5: 6330 to 6692 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 65/121(54%) 0/121(0%) Minus/Minus
Query        3  LLNYFYHYQERYEQQLEI*ARYKYPQTQT*TKL*LNYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVPQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSP  365
                LLNYFYHYQ  YE  LEI*A  K+ QTQ  T L*LNYS* S++AK+LRPN *LQ   KLS SS A  *    H+ + P L   SSFQ    P   HR P  H+ Q +SPG P   QC  +P
Subject   6330  LLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAP  6692

Range 6: 6328 to 6618 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 52/97(54%) 0/97(0%) Plus/Plus
Query        1  LGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*GTLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*FS*SFVYV*VC  291
                LG ++HC  +G PGEL+* LC+ G+LC+  GR  +*ND+   S G L LC +   + A DE+LNF  +*SY LGLK LA  +YYE*FS*S V +*VC
Subject   6328  LGADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VC  6618

Range 7: 6676 to 6747 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 14/24(58%) 0/24(0%) Plus/Plus
Query      349  *K*FNKRTCH*GREFHSLYGRRSR  420
                *K*FNK     G EFHS + R SR
Subject   6676  *K*FNKGANFRG*EFHSFHSRCSR  6747

Range 8: 6330 to 6572 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 41/81(51%) 0/81(0%) Plus/Plus
Query        3  GREFALLVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLRHTTTVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  245
                G  +ALL +W TWR  L  M+ R PM T W S  LK** ++K R    V  S    S R* AQF   LKL IRP*VFG++*
Subject   6330  GSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*  6572

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 4

Range 1: 5874 to 6116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
122.0 bits(260) 0.0 51/81(63%) 0/81(0%) Plus/Plus
Query        5  ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI  247
                ER+CIA+E  NL NCIDNYAIEVSYAY+LGEL++  MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ +   GV+
Subject   5874  ERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM  6116

Range 2: 6153 to 6344 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.4 bits(191) 0.0 39/64(61%) 0/64(0%) Plus/Plus
Query      251  MNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR  442
                M+ LV     F F  + SVLR PV+ H VPG+GKS+LIREL+  D  FIAFTAG PD PNLSGR
Subject   6153  MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGR  6344

Range 3: 5885 to 6115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
67.0 bits(140) 0.0 39/77(51%) 0/77(0%) Minus/Minus
Query       16  ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAM  246
                ITP +  +   I+ N  EIE    CLF T   TQL  AS SSSFI    NSPSL A*+TS+A*LS+Q  +L +S A+
Subject   5885  ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAI  6115

Range 4: 6293 to 6340 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 12/16(75%) 0/16(0%) Minus/Minus
Query      391  PERLGVSGTPAVKAMK  438
                P R G SG+PAVKAMK
Subject   6293  PLRFGGSGSPAVKAMK  6340

Potato virus H isolate YN, complete genome

Sequence ID: Length: 8410 Number of Matches: 3

Range 1: 5702 to 5908 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 40/69(58%) 0/69(0%) Plus/Plus
Query        5  ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA  211
                ER+CIA+E  NL NCIDNYAIEV++AY+LGE ++  M+EEE+EA YNCVR +V+NKH  R ++  +F +
Subject   5702  ERMCIAKETDNLRNCIDNYAIEVAFAYKLGERAVNRMDEEELEAFYNCVRIIVKNKHHCRSNVVEVFSS  5908

Range 2: 5949 to 6146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 36/66(55%) 0/66(0%) Plus/Plus
Query      245  IIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR  442
                ++M+ LV  L+ + F  I+S L  P+VVH VPG+GK+SLIREL+  D  F+A+TAGV D P+LSGR
Subject   5949  LLMDVLVDLLNKYSFTRIHSKLSSPIVVHCVPGAGKTSLIRELIKLDSRFVAYTAGVEDEPHLSGR  6146

Range 3: 5698 to 5871 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 32/58(55%) 0/58(0%) Minus/Minus
Query        1  CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQ  174
                CLF T   TQL* AS SSS I     SP+L A  TS+A*LS+QF RL +S AM + S+
Subject   5698  CLFFTIILTQL*KASNSSSSIRFTARSPNLYAKATSMA*LSIQFRRLSVSFAMHMRSR  5871

Hop mosaic virus, complete genome

Sequence ID: Length: 8550 Number of Matches: 5

Range 1: 5738 to 5941 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.5 bits(237) 0.0 41/68(60%) 0/68(0%) Plus/Plus
Query        5  ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE  208
                ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++  M+EEEV A YNCVR ++RNKH ++  + G++E
Subject   5738  ERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE  5941

Range 2: 6013 to 6210 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 33/66(50%) 0/66(0%) Plus/Plus
Query      242  VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSG  439
                +I M+ +V  L  F F  + + L  P+VVH VPG+GKS+LIREL+  D  F+AFTAG+ D P+L+G
Subject   6013  LIPMDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTG  6210

Range 3: 5737 to 5943 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 37/69(54%) 0/69(0%) Minus/Minus
Query        4  ASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS  210
                +S  P       CLFL   RTQL* A TSSS +     SP  *A  TSIA*LSMQ  RL  S AM ILS
Subject   5737  SS*TPRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILS  5943

Range 4: 6147 to 6212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 13/22(59%) 0/22(0%) Minus/Minus
Query      376  LPERLGVSGTPAVKAMKLSSSV  441
                LP RLG S  PAVKA  L S++
Subject   6147  LPVRLGSSSIPAVKATNLGSAL  6212

Range 5: 5738 to 5887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 21/50(42%) 0/50(0%) Minus/Minus
Query        5  PHTVVVCLNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSL  154
                P+TVV   NFL  H  +  L + VGI +L CI+I+A++Q+    S+A+ L
Subject   5738  PYTVVKGANFLLTHAIDRLLTKRVGIRHLYCIIIDAIVQIIQLHSDAHPL  5887

Ligustrum virus A isolate SK, complete genome

Sequence ID: Length: 8525 Number of Matches: 4

Range 1: 5759 to 5959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 40/67(60%) 0/67(0%) Plus/Plus
Query        5  ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  205
                ER+CIA+E  NL NCIDNYAIEVSYAYRLGE ++  M+EEE  A YNCVR +++NKH ++  ++ L+
Subject   5759  ERMCIAKETNNLANCIDNYAIEVSYAYRLGEKALNRMDEEEAAAMYNCVRIIIKNKHLLKSDVATLY  5959

Range 2: 6007 to 6207 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 34/67(51%) 0/67(0%) Plus/Plus
Query      242  VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR  442
                V+ M+ LVK L+ + F+ +   +R PVV+H VPG+GK+SLIRE++  D  F+A+T G+PD PNL GR
Subject   6007  VLYMDILVKYLNKYNFIRLSQSIRPPVVIHCVPGAGKTSLIREIIQADSRFVAYTCGIPDKPNLEGR  6207

Range 3: 5759 to 5929 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 24/57(42%) 0/57(0%) Minus/Minus
Query        5  VLISN*EPHTVVVCLNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSL  175
                VLI N  PHT+V C  FLFIH       QP+ +  LN I+++ + ++    SNA+SL
Subject   5759  VLILNDYPHTIVHCSCFLFIHSIQCFFTQPICVRDLNGIIVDTICKIIRLLSNAHSL  5929

Range 4: 5758 to 5928 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 32/57(56%) 0/57(0%) Minus/Minus
Query        4  CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS  174
                CLFL    TQL  A+ SSS I     SP+  A*+TS+A*LS+QF+RL +S AM ILS
Subject   5758  CLFLMIILTQLYIAAASSSSIRFNAFSPNRYA*ETSMA*LSIQFARLFVSLAMHILS  5928

Nucleotide Sequence (951 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
96
192
288
384
480
576
672
768
864
951

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
446.4 1208.7 33% 1.817e-124 39% NC_001948
57.4 57.4 9% 2.322e-07 29% NC_009892
55.1 55.1 9% 1.136e-06 27% NC_018714
55.1 55.1 9% 1.136e-06 33% NC_009383
55.6 55.6 7% 8.272e-07 30% NC_005343

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 12

Range 1: 1196 to 2131 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
446.4 bits(968) 0.0 196/312(63%) 0/312(0%) Minus/Plus
Query        6  SLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMDGSWFGLGNLHFNRQRAPYSLGVSHWINSPFSVEHKFAGVINHQILYVALSLVPLSDDPSFKLTSREVDSALSSVRMALGVTGQSKLFGFLVNNTFINEVQRGYKLRLAQHLKSLTWLFHFCGCQWFLLCRRTNLKFLSDRKSSFADLDCGVAKIYSLVSAQAIAPGVLSGLTKVYSFGSNSQQKLISSNVLEGKLCESVQSPNAHFGETLVSHDQEGKVVTSTPHTSQLLD  941
                SLLMPNISKLV+SF CRMMPNALARLSSSFRE SLDSFVY+LEPFNFSVNL+DITPDFFEHLFLFSCLNELI ED+EEVMD SWFGLG+L FNRQRAP+ LG S+W+NS FSVEHKF+G IN QI+ V LSL+P SDDP+F+ +S EV+ ALS V+ AL  TGQSKLF FLV++  + EV+  YK+ L +H+K+LT  F+ CG QWFLL +R+NLKFL DR SSFADLDC V K+Y LV++QAI P  L  LTKV+   S+S+   I   V   +L E     N+   E        G+V  S   + QL D
Subject   1196  SLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTINSQIMQVILSLIPFSDDPTFRPSSTEVNLALSEVKAALEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSSQQLAD  2131

Range 2: 1195 to 1806 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.1 bits(485) 0.0 119/204(58%) 0/204(0%) Plus/Minus
Query      331  QPQK*KSQVSDFKC*ASLNLYPLCTSFMKVLFTKKPKSFDCPVTPRAILTLERAESTSLEVNLKEGSSDNGTKDRATYRIWWLMTPANLCSTENGELIQCDTPREYGAL*RLKCKLPSPNHEPXXXXXXXXXXXXLRQENKNRCSKKSGVISIKLTEKLKGSRA*TNESSEVSRKLEDNLAKALGIIRHKNDITSFEILGINRE  942
                +PQ+ K  V  F C     L  L TS +    TK   +FDCPV   A LT + A  TS+E  LK GSS+NG KD+ T  I  LM P NLCSTEN EL Q + PR+ GAL RL CK PSPN E S+TSS SS+I+S RQE +N+CSKKSGVIS KLTEKLKGS   TNESSE SRKLE++LA A GIIR KND+T+ E+LGI++E
Subject   1195  RPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASSAALTSDSARLTSVEDGLKVGSSENGIKDKITCMI*ELMVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKE  1806

Range 3: 1794 to 1940 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.0 bits(70) 0.0 20/49(41%) 0/49(0%) Plus/Minus
Query      197  KPQGR*PELKPSYRF*QHHNQGQQRRTFGHLEI*GWFFGTEETIDNHRN  343
                +PQ   P +  + + *  HNQ QQR      EI*GW F    TI  H+N
Subject   1794  EPQEVLPVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN  1940

Range 4: 1196 to 1642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.4 bits(252) 0.0 61/149(41%) 0/149(0%) Plus/Minus
Query      495  INFPRSQLKRRII*QWDQGQSNIQNLVVNDTCKLVLNREWRVDPV*HP*GIWSPLTIKVQIAKSKP*AVHNFLNILCNQLIEAGEQK*MLKEVRGNIDQVNREVERLKSIDK*VK*SFAET*RQPG*GIRHHSTQK*HYQL*NIRHQ*R  941
                +N  R   K  II +WDQ  +N+ +L ++   KLVLN ++ V+P+* P     PL I++ + KSKP  VH+  N+L +QLI AGE+K*MLKE+R  I  +N +++ LK + K*+  + ++  R+PG  I HH  ++*+ QL N+ H+ R
Subject   1196  VNLCRRWPKSGIIRKWDQR*NNLHDLRIDGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQR  1642

Range 5: 1682 to 1903 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.1 bits(138) 0.0 32/74(43%) 0/74(0%) Plus/Minus
Query      234  IDFSNTTIKVSKGGLSVT*KFEVGSSAQKKPLTTTEMKEPSQ*FQVLSKP*LIPSLHLIYESVIH*EAKKL*LP  455
                I+F N TIK+SKG   V  KFEVG   +++PL  T +K  S+ F VL K  LI + +L + +V+H + ++ *LP
Subject   1682  INFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LP  1903

Range 6: 1213 to 1629 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 54/139(39%) 0/139(0%) Minus/Plus
Query      508  YFKAGNVIFVSNDA*CLSQVVFKFPRNFT*LICLCS*AFQLLC*LDRYYP*LL*ASIFVLLPQ*ADCRGY*GSYGRLMVWTWQFAL*SSEGSIFPRGVTLDQLSILC*AQVCRCH*PPNSVCCSVLGPIVR*SFF*VDF  924
                +F  G++I + +DA C  Q +F   R F   IC+ +*A     *   Y  * L*A I +LLP+* D  G *  +G+ +VWTW   + S EG +      L QL I  *AQV R H   N     +  PI  *S F*  F
Subject   1213  HF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVLSWVFILAQLQIFS*AQVFRHHQFSNHASYFIFDPIF**SHF*AIF  1629

Range 7: 1677 to 1952 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 36/92(39%) 0/92(0%) Minus/Plus
Query      185  LQGSQSFLAS**ITLS*MRCREGIS*GLLNT*NH*LGSFISVVVNGFFCAEEPTSNF*VTESPPLLTLIVVLLKSIAWFQLRLSPLGFCQA*  460
                L GSQ+       T+  +R    I    L+T*   L + I V  NG    + PTSNF* T   PLL LIV L K I+    R   L  C A*
Subject   1677  LLGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*  1952

Range 8: 1374 to 1631 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 36/86(42%) 0/86(0%) Plus/Minus
Query      506  *KST*KKDHLTMGPRTEQHTEFGG**HLQTCAQQRMES*SSVTPLGNMEPSDD*SANCQVQTMSRP*LPQYPLQSAH*GRRTKIDA  763
                *K  *K DH  MG + +    F  *  L+TCAQ ++ S*+++       PS D*  + QVQT + P*  Q P +S H GRR +I+A
Subject   1374  *KMA*KWDHQKMGSKIK*LA*FEN*WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINA  1631

Range 9: 1861 to 1980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query      157  ELEPKEYTLVKPDKTPGAIA*AETKL*ILATPQSRSAKED  276
                E E    TLVK  +  G+IA   T  * L T QSRSAK+D
Subject   1861  ESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDD  1980

Range 10: 1377 to 1484 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 20/36(56%) 0/36(0%) Minus/Plus
Query      653  IYFCSPASMS*LQRILRKLWTAHGLDLAICTLIVRG  760
                IYF SPA MS* +R L++ WT  GLDL     I RG
Subject   1377  IYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARG  1484

Range 11: 1795 to 1884 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 16/30(53%) 0/30(0%) Minus/Plus
Query      253  FLWLSMVSSVPKNQPQISK*PKVLLC*P*L  342
                FLW  MV    K QPQIS+   ++LC* *L
Subject   1795  FLWPPMVPP*AKVQPQISEGQGIVLC*S*L  1884

Range 12: 8399 to 8473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 11/25(44%) 0/25(0%) Minus/Plus
Query      110  LRYILLAPILNRSSSLRMFLKASCV  184
                LR++L++P+L    S +++LKAS V
Subject   8399  LRWLLISPLLRFKCSDKLWLKASGV  8473

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 1193 to 1453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 25/87(29%) 0/87(0%) Minus/Plus
Query      690  TGSSLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMDGSW  950
                T ++ L+PN+ KL+ +F   + P+++AR    F++ SLD+F+  +E FNFSV    I+  + + +       ++   DI+ +    W
Subject   1193  TVNTKLLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW  1453

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 1204 to 1449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 22/82(27%) 0/82(0%) Minus/Plus
Query      690  LMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMDGSW  935
                ++P++ ++V  F  ++ PN ++R     ++  LD+F+  LE FNFS+N  D++ ++ + L   +     I  ++EE    +W
Subject   1204  MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW  1449

Phlox virus S, complete genome

Sequence ID: Length: 8590 Number of Matches: 1

Range 1: 1190 to 1432 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 27/81(33%) 0/81(0%) Minus/Plus
Query      699  SLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMD  941
                +L+ P + K  +      MP+ LA   SS  E SLD FV  +EPF F V L+D+  ++  +  LFS   E    D+ ++++
Subject   1190  TLIKPEVIKQFLGRWLGKMPHVLAVRFSSVAEVSLDEFVSQMEPFTFQVKLVDVDWNYHHNWDLFSKAEEDYGVDVCDLLN  1432

Poplar mosaic virus, complete genome

Sequence ID: Length: 8741 Number of Matches: 1

Range 1: 1189 to 1386 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 20/66(30%) 0/66(0%) Minus/Plus
Query      747  SSLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLF  944
                SS++MP+  K +  FL  ++P+  +R+ +++RE +LD+F+  L PF+F   L  +    ++ L  +
Subject   1189  SSIIMPDYKKKIAGFLAGLLPHFASRMFAAYREVTLDNFISTLRPFSFIQPLSSLDESLWDELHFY  1386

Nucleotide Sequence (941 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
95
190
285
380
475
570
665
760
855
941

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 12

Range 1: 5189 to 5695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
367.2 bits(795) 0.0 151/169(89%) 0/169(0%) Plus/Plus
Query      423  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK  929
                WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G  EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ +  EAV+EFE KKASKSAATIENH+GRSCRDWLLDVALIFMKSQH TK
Subject   5189  WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTK  5695

Range 2: 4775 to 5137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.6 bits(630) 0.0 117/121(97%) 0/121(0%) Plus/Plus
Query        9  LTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ  371
                LTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVS+G+NEGVREEKLCGDPWLKVMLFLGQ
Subject   4775  LTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQ  5137

Range 3: 5188 to 5694 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
279.7 bits(604) 0.0 127/169(75%) 0/169(0%) Minus/Minus
Query      422  LVWC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH  928
                LV C DFIKIRATS+NQSL DLP *FSIVAALLLAFF+SNS TAS     L LAF+G  +RK S++NFPYG ARL+LAAST GFEN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P  TSR SF AI PTHLALVDS+LL G+WVLNH
Subject   5188  LVQCCDFIKIRATSNNQSLHDLPA*FSIVAALLLAFFASNSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH  5694

Range 4: 4774 to 5007 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 65/78(83%) 0/78(0%) Minus/Minus
Query        8  ITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVS  241
                +TFSPL AVKK * G PAKC+RKLSTL+PVMFT+S+LWLKRDKAV+HRRSSV*KESCD+RIPP LKFNPVDSP VSVS
Subject   4774  MTFSPLLAVKKW*RGLPAKCERKLSTLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVS  5007

Range 5: 5068 to 5121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 14/18(78%) 0/18(0%) Minus/Minus
Query      302  MTFSQGSPHSFSSLTPSF  355
                +TF+ GSPH+FSSLTPSF
Subject   5068  ITFNHGSPHNFSSLTPSF  5121

Range 6: 4775 to 5695 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
372.7 bits(807) 0.0 170/307(55%) 0/307(0%) Minus/Minus
Query        9  FGVVLRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFGSFDLRL*KF*TFPHGHEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHIFPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRE  929
                F  VL LHKN  NI  PIP   T MI Y  CT    L LK  + F     I+   QW+   E + *+ PIW   PQFGSF+L L KF T    HE+G+*II+FM WV AFK  TC+AQLL SSTP+ IKELL  FITT+H  +  Q H ++PPGPG* Q+T  D+GFKPF I*AF L L NF ILIL +EKH+ *P +TT LLL + FI  NAN++  +EV LT +Q+ Y I P F C*K++E F SK+R+K FHPQT DVH I+IVA+ R*S +PP IICVKGIM*Y+N  + E+QPS FT+ + E
Subject   4775  FSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISYDILPTFGC*KMVEGFASKVREKTFHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECE  5695

Range 7: 4770 to 5513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
293.9 bits(635) 0.0 140/248(56%) 0/248(0%) Minus/Minus
Query        4  GKCQVETSHMALRASIWQLRLEALKILDVSSRP*ERSLNHCLYVLGICFQIFHMRCSIARFFHTCVHQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNPHLGQGKA*PLAKDHHTASPLSPLHSAQR*H*NH*RSWAHREASPLSHFPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*AI  747
                GK  +  SHM   AS+WQL+  A KI D   +P* R LNH LY LG CFQ  HM CS+A  FH   HQR V SFHNH +     S P + PTWPWL P Y  G GF*TI HLSI T + QL NPHL  GKA* L   HH  SP   LHS Q * *+H*RS AH  A+ + H P F LLK+ R V QQ+A E+FPPS+ *CS + +CG*+EIK   T DHLCERNHVI*E  H *+STQ IH+ * *A+
Subject   4770  GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AHLGANLV*HSPHFWLLKNGRGVCQQSARENFPPSDL*CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AV  5513

Range 8: 5619 to 5684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 12/22(55%) 0/22(0%) Minus/Minus
Query      853  VETS*KLGQHPATNPYKIYRND  918
                V TS*K  QH  TNP   Y +D
Subject   5619  VVTS*KSEQHLITNPCMTYLHD  5684

Range 9: 4791 to 5531 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.7 bits(602) 0.0 144/247(58%) 0/247(0%) Plus/Plus
Query       25  VNLLG*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGKM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRSLSLNAQMRNGLKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLMNTGVEEASN*ATHVKDLKAYTQDIKAMIQ*PFSWP*GNV*NFQSLKSKLPN*GAQSHMGSFYLTLSFQRFH*  765
                VN LG* S M  F YHMIPFTQMI GG  LYL  ATI I *TS V*GWK F R LL N S  F*Q K G+M    C  VS TS +   LAL  MK   RRS VV  G*+ CFS  KMRI KL+  S NAQM+NGLKP S *V W+QPGPGG  +W *++  +  VVMK  N+SLM+ GVE  SN*A HV+ LKA+TQ IK MIQ*P SW   +V NF+S + KLPN*G  +HMG+ Y  LS+ + H*
Subject   4791  VNQLG*ISKMGEFSYHMIPFTQMIGGGLLLYLASATIWIW*TSQV*GWKVFSRTLLANPSTIF*QPKVGRMSYEICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH*  5531

Range 10: 5619 to 5696 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 15/26(58%) 0/26(0%) Plus/Plus
Query      853  IIPVDLVGIGCWMLP*FL*SLNTTPN  930
                I+ V   GIG  ML *FL*S NT  N
Subject   5619  IMQVGHAGIGY*MLL*FL*SHNTVLN  5696

Range 11: 5095 to 5685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
187.1 bits(402) 0.0 96/197(49%) 0/197(0%) Plus/Plus
Query      329  VW*SLAKGHAFPWPR*GLRS*GA*V*MLK*GMV*NPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL**TQVWKKRAIEQRM*KI*KHIPKT*RQ*FSDLSHGREETSKIFKASSRSCQIEARKAIWEVST*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFYEVST  919
                +W* + K +AFP  R*GL S*   V MLK* MV*NP+P++* G+NQGQVG  +G+E      +WL*ND T+L**   W   A EQ M*++*KH+PK *R+*F++L HG  + S+IF+A   SCQ EA + IWE+    FP +   E +      +*S   +*G+E   +CS+ R+S R*++ GLV  CC +FYEV+T
Subject   5095  MW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTT  5685

Range 12: 4774 to 5064 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 55/97(57%) 0/97(0%) Plus/Plus
Query        8  AHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVDXXXXXXXXXXXXEHHRFEGGKLSVAFCWETALSLFNSKKRGKCDKGLASR*AQLL*WFQC*RW  298
                AH +  *I WVE Q W +S+IT*FLSHR*S V   FIS  PQ    EHHR EGGK S+A CW+T L  FNS+K G+C    A R*A LL W   * W
Subject   4774  AHTHIW*INWVEFQKWGNSHIT*FLSHR*SAVAYCFISLQPQFGFGEHHRSEGGKFSLALCWQTPLPFFNSQKWGECHTRFAPR*A*LLQWL*R*HW  5064

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 8

Range 1: 5242 to 5748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 108/169(64%) 0/169(0%) Plus/Plus
Query      423  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK  929
                WFKTH+P+  LE+ RA+WV ++  KE RE R G  TT+QF DEH   R  +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VPL+  H++ +M  AV  FEEKK SKS ATIENHSGRSC DW +D ALIFMKSQ  TK
Subject   5242  WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAVHAFEEKKLSKSMATIENHSGRSCEDWPIDKALIFMKSQLCTK  5748

Range 2: 4834 to 5190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 66/119(55%) 0/119(0%) Plus/Plus
Query       15  LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ  371
                +T+GESTGLNF+ G IL++++S  T DRRW TALSRFSH++  +N  G+  ++ L+HF GKPL+ FLT ++  + I DLLPG P    GF   VG +EGVRE KL GDPWLK  +FLGQ
Subject   4834  ITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNALTHFVGKPLHKFLTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ  5190

Range 3: 5244 to 5735 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 84/164(51%) 0/164(0%) Minus/Minus
Query      425  *DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  916
                *DF+ I+A S  QS Q+ PE FSIVA L  +FFSS + TA+SI   L L   GT  +KVS RNFP G A LNLA S  G E    F TA++ V  S+PLCLG M S LS AL++ S L  LCSS NC VV  P   SR S  +   TH AL  S  + G  VLN
Subject   5244  *DFMNIKALSIGQSSQERPEWFSIVAILFESFFSSKA*TANSIISLLCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN  5735

Range 4: 4842 to 5018 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
48.7 bits(100) 0.0 26/59(44%) 0/59(0%) Minus/Minus
Query       23  GFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSP  199
                G P KC + LS + P+ F +    L  D+AV+H RS V   S   RI P  K  PVDSP
Subject   4842  GLPTKCVKALSQVTPIPFIK*IS*LNLDRAVHHLRSLVKALS*VTRIAPF*KLRPVDSP  5018

Range 5: 5124 to 5174 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 10/17(59%) 0/17(0%) Minus/Minus
Query      305  MTFSQGSPHSFSSLTPS  355
                + F+QGSP S +S TPS
Subject   5124  LVFNQGSPTSLASRTPS  5174

Range 6: 4837 to 5748 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
121.6 bits(259) 0.0 87/304(29%) 0/304(0%) Minus/Minus
Query       18  FGVVLRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFGSFDLRL*KF*TFPHGHEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHIFPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTES  929
                F   LRLH+    I  PI T +T M+     T   F   K  +S  H    +  IQ +  ++ +K K       PQFG F     + * F + H +   I + MSWV  F  F+CV +       VFI EL    +  S F++ L    ++P  P   +   W M  +P L      K++ F +  LAKE   L*P I+    LS+  I PN  ++T  ++     Q+   I  +   *K+++ F +KM Q         ++ + I+ K  *S  PPA+     ++ ++N  +L+++ S  T S
Subject   4837  FRAQLRLHEYQSFIDWPILTGTTRMVLNSGHTL*EFFLFKGMNSKFHHFTAMLAIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGISN*FSLSNALICPNLALKTFNQLWAAR*QINNVIIASSLG*KLMQGFTNKMCQGIVPSDPHSIYKMNIMTKPG*SSPPPAVAG*STLISHENSPLLKIKTS*LTIS  5748

Range 7: 5400 to 5561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 22/54(41%) 0/54(0%) Plus/Plus
Query      581  QRM*KI*KHIPKT*RQ*FSDLSHGREETSKIFKASSRSCQIEARKAIWEVST*H  742
                QR *K+* H+PKT*  *+  + +G +E  K+  +S  +CQIE    +W++S *+
Subject   5400  QRS*KV*SHLPKT*GN*YRHVLNGCKEKVKLLLSSC*TCQIEEGSPLWKISP*Y  5561

Range 8: 5003 to 5245 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 27/81(33%) 0/81(0%) Plus/Plus
Query      184  ILLGNRSITF*QQKAGKM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRSLSLNAQMRNG  426
                ILL N  I+F* ++   M    C+  + + L V    LG M+  ER + + I G*R   SLA ++      L  + Q R G
Subject   5003  ILLVNPCISF*PRELAMMTLLICYLAAQS*LKVFRAKLGQMRAFERLN*LEIPG*RLRSSLASLQTLN*MILKRSKQRRIG  5245

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 6

Range 1: 5087 to 5593 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
271.0 bits(585) 0.0 112/169(66%) 0/169(0%) Plus/Plus
Query      423  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK  929
                WFKTHIP+  LE+ RARWV K+  KE RE R G+E T+QF DEH     +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +PL   H+++LM +AV +FEEKK SKSAATIENHSGRS RDW +D ALIFMKSQ  TK
Subject   5087  WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTK  5593

Range 2: 4679 to 5035 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 63/119(53%) 0/119(0%) Plus/Plus
Query       15  LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ  371
                LTFGESTGLNF+ G I +S++S  T +RRWLTALSRFSH +  +N   +   + +S F GK L  F + ++  + + DLLPG+P F  GF V++GR+E VRE KL GDPWLK  +FLGQ
Subject   4679  LTFGESTGLNFQKGAIFVSYESSLTSERRWLTALSRFSHEIHFINGLSIEWSNVMSLFHGKALNKFFSKRASHDDVVDLLPGKPEFIEGFQVNIGRDEEVREPKLSGDPWLKTAIFLGQ  5035

Range 3: 5236 to 5592 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
127.1 bits(271) 0.0 66/119(55%) 0/119(0%) Minus/Minus
Query      572  LVWC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNC  928
                LV   DF+KI A S+ QSL + PE FS+VAALLL+FFSS S TA  +R    L   G + RKV  RN P G A LNLA S  G+E    FLTA+R VTES+PLCLG ++S LS AL+ C
Subject   5236  LVQSWDFMKISALSTGQSLLERPEWFSMVAALLLSFFSSKSLTAFDMRSLSCLPQRGIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVIC  5592

Range 4: 5089 to 5220 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 25/44(57%) 0/44(0%) Minus/Minus
Query      425  LCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  556
                LCSS NC V S*P L S  SF +I  THLAL  S+   G+ VLN
Subject   5089  LCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN  5220

Range 5: 4681 to 4794 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.2 bits(101) 0.0 22/38(58%) 0/38(0%) Minus/Minus
Query       17  WLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKV  130
                WL R++AVNH  S V + S D +I P  KF PVDSPKV
Subject   4681  WLNRERAVNHLLSLVRELS*DTKIAPF*KFRPVDSPKV  4794

Range 6: 4706 to 5581 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 79/292(27%) 0/292(0%) Minus/Minus
Query       42  LRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFGSFDLRL*KF*TFPHGHEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHIFPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEV  917
                L  H+N*  +  PIP R+  M+F    T A FL  K   SF H++ I+   +  +  E ++ +   W  +P F +F+  L +   F + H +   + A M  + +F  F+CV  L A    +F+ +LL   +T    + FL ++  +PP P   +   W++ F+P  +  F    L   + +L ++     P ITT   L++ FIP N ++ET+ +  L+GK++ Y I  +    ++++ F  K R          ++ +  +AK R S  P    C +  + YK+ S L++
Subject   4706  LGFHEN*CFVDWPIPARTP*MVFNGCSTLAEFLLFKIIDSF*HEIAIMLTAKRYIL*EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT*FRLAYLFIPANIHLETLNKFRLSGKEINYIIMASSL*KELVQGFTMKERHNIAPLNA*TINEVDFMAKPRESS*PSPFTC*RAFIRYKDCSFLKI  5581

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 10

Range 1: 5238 to 5744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
273.2 bits(590) 0.0 112/169(66%) 0/169(0%) Plus/Plus
Query      423  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK  929
                WFKTHIP+ +LE+ RA+WV K+  +E RE R G  TT+QF D+H   R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VPLN+SH+  +M EAV  FEEKK SKS ATIENHSGRSC DW +D ALIFMKSQ  TK
Subject   5238  WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTK  5744

Range 2: 4830 to 5186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 64/119(54%) 0/119(0%) Plus/Plus
Query       15  LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ  371
                +T+GESTGLNF+ G IL++++S  T DRRW TALSRFSH++  +N  G+  ++ ++HF GKPL+ F T ++  + I DLLPG P    GF   VG +EGVRE KL GDPWLK  +FLGQ
Subject   4830  ITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNAITHFVGKPLHKFFTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ  5186

Range 3: 5390 to 5743 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.2 bits(267) 0.0 66/118(56%) 0/118(0%) Minus/Minus
Query      575  LVWC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN  928
                LV   DF+K+ A S+ QS QDLPE*FSIVA L   FFSS + TAS I F+  L F GT  RKVSSRN P G A  + A S  G E    FLTA+R V  S+PLCLGY+ S  S AL+N
Subject   5390  LVQSWDFMKMSALSTGQSSQDLPE*FSIVAILFDNFFSSKA*TASCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN  5743

Range 4: 4832 to 5032 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 29/67(43%) 0/67(0%) Minus/Minus
Query       17  VKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKV  217
                VK  *SG P K    LS + P+   +    L  ++AV+ RRS V   S   +I P  KFNPVDSP V
Subject   4832  VKNL*SGLPTKWVIALSQVTPMPLMK*MS*LNLERAVHQRRSLVRALSYVTKIAPFWKFNPVDSPYV  5032

Range 5: 5240 to 5365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 19/42(45%) 0/42(0%) Minus/Minus
Query      425  SSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  550
                SS NC VV  P   S  S      TH AL  S+L+ G+ VLN
Subject   5240  SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN  5365

Range 6: 5120 to 5170 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 10/17(59%) 0/17(0%) Minus/Minus
Query      305  MTFSQGSPHSFSSLTPS  355
                + F+ GSP S +SLTPS
Subject   5120  LVFNHGSPTSLASLTPS  5170

Range 7: 5085 to 5465 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 39/127(31%) 0/127(0%) Minus/Minus
Query      270  HEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKE  650
                H+K   I A M  VY+F + + ++ LL +   V I ELL   +T +   +  +    NP      +   WD+  +P L     ++  NF + IL KE   L*P IT     S  FI  N  +E+  E
Subject   5085  HKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPILGRLNLIRDFNFKVRILPKEDLGL*PWITH*FSFSDTFISTNLALESFNE  5465

Range 8: 5550 to 5744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 26/65(40%) 0/65(0%) Minus/Minus
Query      735  FGVVLRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK  929
                FG  L LH++   I  PI TR + +I  C  TF   LFLK  +SF H   I+  IQ +  ++ VK
Subject   5550  FGAKLGLHEDECFIHWPIFTRPSRVILNCGHTF*QLLFLKGMNSFLHHFFIMTAIQRHSFQKGVK  5744

Range 9: 5411 to 5743 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 35/111(32%) 0/111(0%) Plus/Plus
Query      596  I*KHIPKT*RQ*FSDLSHGREETSKIFKASSRSCQIEARKAIWEVST*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFYEVSTPHQ  928
                +* +IP+ *  *+ ++S+G  E  ++     R+C+    +   ++  *H   K ++E +   K DA SC+ +*GKE  +K   N +S   +L* L +G   + +EV T HQ
Subject   5411  L*SYIPQA*GH*YCNISYGS*EEIELLLPCCRACKTSKSQTFRQIPA*HLSEKSASE*QS**KNDAGSCSCL*GKEVVKKYGHN*ESLWKVL*RLASG*STHLHEVPTLHQ  5743

Range 10: 3869 to 3910 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.9 bits(48) 0.0 8/14(57%) 0/14(0%) Plus/Plus
Query      166  WKAFCRILLGNRSI  207
                WK  CRIL G R++
Subject   3869  WKNSCRILFGERAL  3910

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 6

Range 1: 5239 to 5745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
254.9 bits(550) 0.0 105/169(62%) 0/169(0%) Plus/Plus
Query      423  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK  929
                WFKTHIP+  LE+ RA+WV ++  +E RE R G  TT+QF D+H   R ++L+NA ER+E+IYPRHKG +    L AV+KRL FS P  E AKLRRA+P+GKFLLDTFL ++PLN  HN ++M EAV  FEEKK SKS ATIENHSGRSC DW +D ALIFMKSQ  TK
Subject   5239  WFKTHIPIMGLEAVRAQWVDRILSREVREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTEFALDLGAVKKRLSFSSPAAENAKLRRARPFGKFLLDTFLKRIPLNCRHNESMMSEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTK  5745

Range 2: 4831 to 5187 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.8 bits(349) 0.0 64/119(54%) 0/119(0%) Plus/Plus
Query       15  LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ  371
                +T+GESTGLNF+ G IL++++S  T DRRW TALSRFSH++  +N  G+  ++ ++HF GKPL+ F T ++  + I DLLPG P    GF   VG +EGVRE KL GDPWLK  +FLGQ
Subject   4831  ITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNAITHFVGKPLHKFFTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ  5187

Range 3: 5241 to 5729 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 86/163(53%) 0/163(0%) Minus/Minus
Query      425  DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN  913
                DF+KI+A S+ QS  DLPE*FSIVA L  +FFSS + TAS I  +L L F G   RKVS+RNFP G A LNLA S  G E    F TA R    S+PLCLG + S  S A +N      L SS NC VV  P L S  S ++I  TH AL  SK + GIWVLN
Subject   5241  DFMKIKALSTGQSSHDLPE*FSIVAMLFDSFFSSKA*TASLIIDSLCLQFKGILLRKVSNRNFPKGLALLNLAFSAAGEEKLNLFFTAPRSRANSVPLCLG*IAS*RSAAFVNSCPRFLL*SSVNCSVVMSPILNSLTSLDSILSTHCALTASKPIMGIWVLN  5729

Range 4: 4833 to 5015 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 27/61(44%) 0/61(0%) Minus/Minus
Query       17  GFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKV  199
                GFP K    LS + P+ F +    L  D+AV+ RRS V   S   RI P  K  PVDSP V
Subject   4833  GFPTKWVIALSHVTPMPFMK*IS*LNLDRAVHQRRSLVRALS*VTRIAPF*KLRPVDSPYV  5015

Range 5: 5121 to 5171 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 12/17(71%) 0/17(0%) Minus/Minus
Query      305  MTFSQGSPHSFSSLTPS  355
                + FS GSP SF+SLTPS
Subject   5121  LVFSHGSPTSFASLTPS  5171

Range 6: 5472 to 5744 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 28/91(31%) 0/91(0%) Plus/Plus
Query      656  EETSKIFKASSRSCQIEARKAIWEVST*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFYEVSTPHQ  928
                +E  ++   SS  CQIE  + +W++   H P +   E +     D * C+ +*G+E+ +K   NR+S R ++* L      +F+EV   H+
Subject   5472  KEKVELLFPSSGECQIEKSQTLWKIPVGHLPQENPFELQT**IYDE*GCSCL*GEEAIKKHGYNRESLREVM*RLAC**SFDFHEVPVVHK  5744

Nucleotide Sequence (675 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
68
136
204
272
340
408
476
544
612
675

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
377.3 824.9 54% 8.034e-104 35% NC_003462
476.7 1470.1 44% 9.4e-134 36% NC_001948
369.5 855.0 55% 1.778e-101 39% NC_009892
368.1 691.0 49% 4.609e-101 28% NC_012038
366.3 880.2 47% 1.642e-100 37% NC_014821

Alignments

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 7

Range 1: 5382 to 6041 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
377.3 bits(817) 0.0 159/220(72%) 0/220(0%) Plus/Plus
Query        3  GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLPN  662
                G+ L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRAKP+GKFLLDTFL +VPLN+SH+  M  EAV  FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL RFAPYMRYIE K+ + L  N YIHSGK +D+L  WV    F G+CTESDYEAFDASQDHFIL+FEL+VM+FLGLP+
Subject   5382  GQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVLCRFAPYMRYIESKVTEVLPKNLYIHSGKNIDDLAAWVTTSKFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPS  6041

Range 2: 5669 to 6037 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
118.8 bits(253) 0.0 70/123(57%) 0/123(0%) Minus/Minus
Query      290  GNPKNRITCNSNDKMK*XXXXXXXXXXXSVQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE*  658
                G PKN +T +S  ++K*S EASNAS*SDSV  P+    +T +  SS   PE*M +F     ++  SMYL+*GA   +T C*KQA+VCPALA LNLLSN VQ WDFMK+ A S+ QS  DLPE*
Subject   5669  GKPKNFMTSSSKARIK*SCEASNAS*SDSVHTPLNLLVVTQAARSSIFFPE*MYRFFGSTSVTLDSMYLM*GANLQRTEC*KQARVCPALALLNLLSNLVQSWDFMKMSALSTGQSSQDLPE*  6037

Range 3: 5426 to 5587 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 29/54(54%) 0/54(0%) Minus/Minus
Query       47  LAFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG  208
                L F GT  + VSSRN P G A  SFA S  G E    F TAI+ V  S+PLCLG
Subject   5426  LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLG  5587

Range 4: 5532 to 6020 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.6 bits(235) 0.0 67/163(41%) 0/163(0%) Minus/Minus
Query      153  HYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF*QKCVKQKLSIR  641
                H  +LK QD++ILRGIKCLII   A+  + +  +P    I   +R+NV I +  L  L FNV H+  K+ +N MLKA +SL S   P  +VKF   LG HE+   I  PI T P+ +IL    TF  L   K +N  + H  I+ +IQ +  QK VKQ+ + R
Subject   5532  HDFKLKSQDKMILRGIKCLIIRLGAHTIEFTCSHPSC*VINILSRMNV*IFWKHLCNLGFNVSHVGCKSAKN*MLKASKSLSSFGTPEPVVKFGAKLGLHEDECFIHWPIFTRPSRVILNCGHTF*QLLFLKGMNSFLHHFFIMTAIQRHSFQKGVKQEFAER  6020

Range 5: 5530 to 6015 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.5 bits(154) 0.0 56/162(35%) 0/162(0%) Plus/Plus
Query      151  SLMESFCLTHFCQKFH*MLATMSICSMRQFRSLKPKRLAKVLQL*RIIQAGHVGIGY*MSL*FS*NPNIVQNLTID*G*LRLGKLWPAFNMQFWFVLLLI*GTLKRSSCKL*NRIFTFTLVKVLMNLMNGLKRETLQAFAQNQIMRHLMPLRITSSCHLSCK  636
                +L  + CLT F ++  *+   M     + F  L+ +   KV    RI   G V IG  +    S*+PN   NLT   G  +L +L  AFN+QF+  L   * TL     +   +I+TF L ++LM    G  +      A + IMRHLMP +I  S  LS K
Subject   5530  NLSANSCLTPF*KECL*IAVMMKK*CRKLFMPLRKRSCQKVWPQLRITLEGLVKIGQWIKHSSS*SPNFAPNLTTGSGVPKLDRLLLAFNIQFFADLHPT*DTLNPRLQRCFQKIYTFILERILMT*QLG*LQVNSMVCAPSLIMRHLMPRKIILSWLLSLK  6015

Range 6: 5666 to 5890 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 27/75(36%) 0/75(0%) Plus/Plus
Query      287  ESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW  511
                ES  +V+  LA+    + HE+PTL++I*Q ++    W +  LLST S    C+L+E+H* + +     + +HS W
Subject   5666  ESLWKVL*RLASG*STHLHEVPTLHQI*QQVQECQSWTDSCLLSTFSSLQICTLHEIH*IQGYRGASKKSIHSFW  5890

Range 7: 5945 to 5995 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 10/17(59%) 0/17(0%) Plus/Plus
Query      566  LHRIRL*GI*CLSGSLH  616
                +HR+ L*GI*CL+ S +
Subject   5945  VHRV*L*GI*CLARSFY  5995

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 13

Range 1: 5333 to 5989 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
476.7 bits(1034) 0.0 205/219(94%) 0/219(0%) Plus/Plus
Query        3  GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP  659
                GE LSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN  MF+EAVQEFEAKKASKSAATIENH+GRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWV+ R FTGICTESDYEAFDASQDHFIL+FELQ+M+FLGLP
Subject   5333  GEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRTRGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLP  5989

Range 2: 5626 to 5901 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 70/92(76%) 0/92(0%) Minus/Minus
Query      296  VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLP  571
                VQ+PV    LTHS SSSRP PE M*K GF+AC+SFFSMYLI*GAKRT+TAC KQA+VCPALATL+LLSN VQC DF+KI+ATS++QS HDLP
Subject   5626  VQIPVNPLVLTHSFSSSRPFPEWM*KLGFRACISFFSMYLI*GAKRTRTACWKQARVCPALATLSLLSNLVQCCDFIKIRATSNNQSLHDLP  5901

Range 3: 5371 to 5538 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 39/56(70%) 0/56(0%) Minus/Minus
Query       41  LAFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M  208
                LAFNG  D+  S++NFP G ARLS AAST GFEN +RFRTA++KV+ES PLCLG*M
Subject   5371  LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*M  5538

Range 4: 5941 to 5988 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 12/16(75%) 0/16(0%) Minus/Minus
Query      611  GNPKNRITCNSNDKMK  658
                GNPKN I CNSN +MK
Subject   5941  GNPKNFIICNSNARMK  5988

Range 5: 5519 to 5983 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.2 bits(352) 0.0 76/155(49%) 0/155(0%) Minus/Minus
Query      189  P*KPHYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF  653
                P K HYLQ +  DEV+L  IK  ++*FCAN+ + S  +P ++ + TF  ++V++R  SLH L  NV HI  K NQN ML+A + LPS SY   +VKF T+L  H+N S+I**PIP *P  MILYSC T  SL   KLL   ++H  I+   QW+F
Subject   5519  PQKFHYLQFEC*DEVVLGSIKGFVV*FCANSSESSSSDPLVQLVXTFP*MDVEVRLQSLH*LFLNVSHIGCKANQNSMLEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDF  5983

Range 6: 5331 to 5447 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 19/39(49%) 0/39(0%) Minus/Minus
Query        1  ALKTLNASGQPLKK*WNHYPYV*GKCFQIFHKHCLITHQ  117
                A K  +A GQP  +  NH+ Y  GKCFQ  H HC + HQ
Subject   5331  ASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQ  5447

Range 7: 5520 to 5984 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 75/155(48%) 0/155(0%) Plus/Plus
Query      190  KFH*MLATMSICSMRQFRSLKPKRLAKVLQL*RIIQAGHVGIGY*MSL*FS*NPNIVQNLTID*G*LRLGKLWPAFNMQFWFVLLLI*GTLKRSSCKL*NRIFTFTLVKVLMNLMNGLKRETLQAFAQNQIMRHLMPLRITSSCHLSCK*CGF*G  654
                K H*    +  C M+++RSL+ +RL +V QL*RI+Q GH GIGY*M L*F *+ N V NLT    *L+LGK   A NM FWF L  I* TL++S CKL*+   T    KV  +  +G + E    FAQNQ  + LM  + TSS H +C+*  F G
Subject   5520  KSH*KPVIIPSCFMKRYRSLRRRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTVLNLTTGLE*LKLGKPLLASNMLFWFALHPI*DTLRKS*CKL*SLTSTSIQGKVXTS*TSGSELEDSLEFAQNQTTKPLMLPKTTSS*HSNCR**NFWG  5984

Range 8: 5332 to 5532 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 24/67(36%) 0/67(0%) Plus/Plus
Query        2  W*VIKQCL*KI*KHLP*T*G**FHHFFNGCPEAFKVFKATSGGCEAKACKALWKVSA*HIFVKSSIE  202
                W*  +QC+*++*KHLP  *  *F++  +GCP+A ++F+A    C+ +A + +W++      +++ IE
Subject   5332  W*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIE  5532

Range 9: 5602 to 5850 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 45/83(54%) 0/83(0%) Plus/Plus
Query      272  CCNYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW*RS  520
                C NYRES R VM GL  RC  +F+E+ TLY I*Q    S* WAN  LL TC  GS C+LYE+H*++A+AS +   LH    RS
Subject   5602  CSNYRESCR*VMQGLVIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLPTCCSGSLCTLYEIH*EKANASSEA*LLHPFRERS  5850

Range 10: 5331 to 5474 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 25/48(52%) 0/48(0%) Plus/Plus
Query        1  LVSY*AMLVKDLKAFTLDIRVMIPSLF*WLSGSV*SFQSHKWRLRS*G  144
                LVS *AM V+ LKAFT  I+ MI     WLS SV +F+S + +L +*G
Subject   5331  LVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*G  5474

Range 11: 5881 to 5985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 15/35(43%) 0/35(0%) Plus/Plus
Query      551  KLYRHLHRIRL*GI*CLSGSLHLVI*VASNAVFRV  655
                +++ +LHRIRL  +*C    LH  I +A N +F V
Subject   5881  RIHWNLHRIRLRSL*CFPRPLHPSIRIADNEIFGV  5985

Range 12: 5553 to 5957 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 62/135(46%) 0/135(0%) Minus/Minus
Query      223  QMTR*SDPERHQMPHNLILCKCL*SFAL*PIH*VHQDLYQSECKNSVLKLA*ASFQCTSYKEQNEPKLHVESRPKFAQP*LPLIYCQILYNVGIS*KLKRHLVANPDMTCLNDSL*LQHFC*PFWLQTPELPH*T  627
                +M  *S   +HQ   +LILCK  *    *P      DL  + C++   +LA A  QC SY+ Q+EP+ HV S+  FAQ *L    CQI Y+V  S*K ++HL+ NP MT L+DSL*L H  *P   QTP   H T
Subject   5553  RMLG*SGLGKHQRLRSLILCKFQ*IL*F*PTRSARXDLSLNGCRS*ASELALAFSQCISYRVQSEPEQHVGSKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLITNPCMTYLHDSL*LLHSY*PSSPQTPVPLHET  5957

Range 13: 5333 to 5422 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 16/30(53%) 0/30(0%) Minus/Minus
Query        3  DSH*KSDGIITLMSRVNAFKSFTSIA**LT  92
                DSH +   II+ M  VNAFK  T IA  LT
Subject   5333  DSHEEGY*IISFMPWVNAFKPLTCIAQLLT  5422

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 9

Range 1: 5231 to 5887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
369.5 bits(800) 0.0 155/219(71%) 0/219(0%) Plus/Plus
Query        3  GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP  659
                G+ ++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL  +PL   H+ ++ ++AV +FE KK SKSAATIENHSGRS RDW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL RFAPYMRYIE KL  AL   FYIHSGK +D+L  WVK +NF+G CTESDYEAFDASQDHFIL+FE+++MR LGLP
Subject   5231  GKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVLCRFAPYMRYIEAKLFNALPDRFYIHSGKNIDDLGNWVKKQNFSGECTESDYEAFDASQDHFILAFEIEIMRHLGLP  5887

Range 2: 5438 to 5872 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.0 bits(225) 0.0 57/145(39%) 0/145(0%) Minus/Minus
Query      210  PHYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIV  644
                PH    K +DEVILR IK LI+*F     K+   NP  + I   T ++V+  +  + +L  N+PH+  K  Q+ +LK  Q LPSL     IVK    LGFHEN*  +  PIP    *M+   CST A    FK+++     I I+
Subject   5438  PHNFYFKCKDEVILRSIKGLIV*FSTLT*KILLLNPVPEVINILT*MDVESVWECIEKLGLNIPHVGGKPTQDRVLKTSQGLPSLCTSKPIVKLSAELGFHEN*CFVDWPIPARTP*MVFNGCSTLAEFLLFKIIDSF*HEIAIM  5872

Range 3: 5269 to 5424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 25/52(48%) 0/52(0%) Minus/Minus
Query       41  GTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M  196
                G + + V  RN P G A L+ A S  G+E    F TAI+ V ES+PLCLG*+
Subject   5269  GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*I  5424

Range 4: 5521 to 5799 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
99.6 bits(211) 0.0 52/93(56%) 0/93(0%) Minus/Minus
Query      293  VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE  571
                V  P KF  LT    SS  LPE M*     A  S  S+YL+*GA   KT C*KQAKVCPA A  N LSN VQ WDFMKI A S+ QS  + PE
Subject   5521  VHSPEKFCFLTQFPRSSIFLPEWM*NLSGSALKSLASIYLM*GANLHKTEC*KQAKVCPAFALRNRLSNLVQSWDFMKISALSTGQSLLERPE  5799

Range 5: 5246 to 5320 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 10/25(40%) 0/25(0%) Minus/Minus
Query       18  DSH*KSDGIITLMSRVNAFKSFTSI  92
                +SH*+ D +  LM R+N+F  F+ +
Subject   5246  NSH*ERDRVGALMPRINSFVPFSCV  5320

Range 6: 5500 to 5856 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.5 bits(213) 0.0 55/119(46%) 0/119(0%) Plus/Plus
Query      272  CCNYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW*RS**T**MG*SAKLYRHLHRIRL*GI*CLSGSLHLVI*  628
                CCN+ + FR    GLA+R   NFHEIPTL+ +*Q +    GWAN GL S       C L+EV+* +A      + LH   *  **   +G* AK +R ++ IRL*G+*C S SLH  I*
Subject   5500  CCNH*KPFRAF*QGLASRQSTNFHEIPTLH*V*QSVSKCKGWANLGLFSALCLV*VCPLHEVY*GQAFQCTPRQILHPFR*EY**PRELG*EAKFFR*VY*IRL*GL*CFSRSLHPCI*  5856

Range 7: 5724 to 5855 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 21/44(48%) 0/44(0%) Minus/Minus
Query      496  QMTR*SDPERHQMPHNLILCKCL*SFAL*PIH*VHQDLYQSECK  627
                QM  *SD E+HQ PH+LI    L +FA *P    HQ  Y + C+
Subject   5724  QMQG*SDLEKHQRPHSLIQYTHLKNFAS*PSSRGHQYSYLNGCR  5855

Range 8: 5475 to 5600 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 21/42(50%) 0/42(0%) Minus/Minus
Query      247  CQILYNVGIS*KLKRHLVANPDMTCLNDSL*LQHFC*PFWLQ  372
                CQ    VGIS*KL    +ANP    LN    LQH C*   LQ
Subject   5475  CQT*CRVGIS*KLVLCRLANPC*NALNGFQWLQHSC*VSSLQ  5600

Range 9: 5619 to 5690 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 10/24(42%) 0/24(0%) Minus/Minus
Query      391  QCTSYKEQNEPKLHVESRPKFAQP  462
                Q TS + Q   +   E++P+FAQP
Subject   5619  QYTSCRGQTYTRQSAENKPRFAQP  5690

Helleborus net necrosis virus, complete genome

Sequence ID: Length: 8542 Number of Matches: 6

Range 1: 4712 to 5368 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
368.1 bits(797) 0.0 156/219(71%) 0/219(0%) Plus/Plus
Query        3  GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP  659
                G++L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL  A+ YGK+LLD FL  VPL A HN      +V++FE KK SKSAATIENHSGRSCRDWL DV LIFMKSQ CTKFDNR RVAKA Q++ CFQH+VL RFAPYMRYIE KL +AL  NFYIHSGKGL+ELN+WV   NF GICTESDYEAFDASQD  I++FEL  M +LGLP
Subject   4712  GKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQHSVLCRFAPYMRYIEMKLQEALPKNFYIHSGKGLEELNKWVLGGNFRGICTESDYEAFDASQDQHIVAFELACMEYLGLP  5368

Range 2: 5002 to 5280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 53/93(57%) 0/93(0%) Minus/Minus
Query      293  VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE  571
                VQ+P K    TH  +SS+PLP *+*KF  +A  SF SMYLI GA R  T C KQ   C ALAT NLLSN VQ WDF+ I  TS+SQS  + PE
Subject   5002  VQIPRKLPPSTHLFNSSKPLPL*I*KFFGRASCSFISMYLIYGANRHSTECWKQTIDCAALATRNLLSNLVQIWDFINISPTSASQSLQERPE  5280

Range 3: 4750 to 4914 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 36/55(65%) 0/55(0%) Minus/Minus
Query       41  AFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M  205
                AFNGT  K +SSR FP*  A  S A ST G EN KRF TAI+KV  SL LCLG*M
Subject   4750  AFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*M  4914

Range 4: 4865 to 5170 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 36/102(35%) 0/102(0%) Minus/Minus
Query      156  NVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF*QKCVKQKLSI  461
                +VPHI  ++ Q  ML+A   L S  +  S+V+F   LG H+    I *PIPT  + M+ Y C T   L  F++ +       IV   Q +  Q+ VK  LS+
Subject   4865  DVPHIWGESTQY*MLEANYRLRSFGHTESVVEFGANLGLHKYKPHIC*PIPTRASRMVFYCCCTLTCLLFFEISHTPGHEFRIVLGFQRHKFQEIVK*ILSV  5170

Range 5: 5201 to 5350 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 14/50(28%) 0/50(0%) Minus/Minus
Query      492  HYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKI  641
                H  QLK    ++L  IK  I+ F AN  +++  +PF++  +    +N+++
Subject   5201  HASQLKSHYVLVLACIKSFIVRFGANTPEITTKHPFVQLFQALAAMNIEV  5350

Range 6: 4981 to 5214 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 29/78(37%) 0/78(0%) Plus/Plus
Query      272  CCNYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHS  505
                C N R+ F  ++ GLA+RC    +E+P L++I Q I      A   LL   S  S   +YEVH  E   S   E L+S
Subject   4981  CSNNRKPFWTLL*GLASRCGAYIYEVPDLHQIRQQIPCGQSCAIDSLLPAFSTVSIRPIYEVHRDETTGSPAEELLYS  5214

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 9

Range 1: 5395 to 6042 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
366.3 bits(793) 0.0 153/216(71%) 0/216(0%) Plus/Plus
Query       12  LSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP  659
                L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P  E AKLRRA+P+GKFLLDTFL +VPL+  H+  M   AV  FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL RFAPYMRYIE K++++L  N YIHSGK +D+L  WV+   F G+CTESDYEAFDASQDHFIL+FEL+VM++LGLP
Subject   5395  LTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAVHAFEEKKLSKSMATIENHSGRSCEDWPIDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVLCRFAPYMRYIEAKVVESLPKNLYIHSGKNIDDLASWVRIHKFNGVCTESDYEAFDASQDHFILAFELEVMKYLGLP  6042

Range 2: 5676 to 5954 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 53/93(57%) 0/93(0%) Minus/Minus
Query      293  VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE  571
                V  P+    LT    SS   PE*M*+F      +F SMYLI*GA   KT C*KQAKVCPALA  NLLSNFV   DFM IKA S  QS  + PE
Subject   5676  VHTPLNL*ILTQDARSSIFFPE*M*RFFGSDSTTFASMYLI*GANLHKTEC*KQAKVCPALALRNLLSNFVHN*DFMNIKALSIGQSSQERPE  5954

Range 3: 5424 to 5591 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 31/56(55%) 0/56(0%) Minus/Minus
Query       41  LAFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M  208
                L   GT  K VS RNFP G A L+ A S  G E    F TAIK V  S+PLCLG*M
Subject   5424  LRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*M  5591

Range 4: 5661 to 6029 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 45/123(37%) 0/123(0%) Plus/Plus
Query      278  NYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW*RS**T**MG*SAKLYRHLHRIRL*GI*CLSGSLHLVI*VASNAV  646
                +Y E F   + GLA R  F+ HE+  +++I*Q I    G  NF LLST      C LYE+H  ++      + LHSLW   **+  +G ++++   ++RI L G *C++G LH  +*+ S+ +
Subject   5661  HY*EPFWSFL*GLANR*SFDIHEVSIVHEI*QQIPKCQGRTNFSLLSTFCLVQICPLYEIHRSKSGGVTPKKSLHSLWEEY**SGILGQNSQIQWCVYRI*LRGF*CITGPLHSGL*IGSHEI  6029

Range 5: 5409 to 5576 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 24/56(43%) 0/56(0%) Plus/Plus
Query       26  *KI*KHLP*T*G**FHHFFNGCPEAFKVFKATSGGCEAKACKALWKVSA*HIFVKS  193
                *K+* HLP T*G *+ H  NGC E  K+  ++   C+ +    LWK+S *++F +S
Subject   5409  *KV*SHLPKT*GN*YRHVLNGCKEKVKLLLSSC*TCQIEEGSPLWKISP*YLFEES  5576

Range 6: 5542 to 6042 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.5 bits(224) 0.0 65/167(39%) 0/167(0%) Minus/Minus
Query      159  WQP*KPHYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF*QKCVKQKLS  659
                WQ    H  Q K Q+EV+L  IK L++ FC +  +    +P  + I    RVNV+I +  LH   F V HIR K+ Q+ MLKA  SL  L    S+VKF   L  HE  S I  PI T    M+L S  T    F FK +N    H   + +IQ +  QK +K+K S
Subject   5542  WQTKIFHDFQFKGQNEVVL*CIKSLVVRFCTHTIEFVNSDPGCQIINILPRVNVEIFWE*LHHFCFYVSHIRGKSAQDRMLKAS*SLSGLGTSESVVKFRAQLRLHEYQSFIDWPILTGTTRMVLNSGHTL*EFFLFKGMNSKFHHFTAMLAIQRDSLQKGIKEKFS  6042

Range 7: 5401 to 5472 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/24(50%) 0/24(0%) Minus/Minus
Query       18  SH*KSDGIITLMSRVNAFKSFTSI  89
                SH*+  GI +LMS VN F  F+ +
Subject   5401  SH*ERGGISSLMSWVNGFIPFSCV  5472

Range 8: 5621 to 6019 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 50/133(38%) 0/133(0%) Plus/Plus
Query      238  FRSLKPKRLAKVLQL*RIIQAGHVGIGY*MSL*FS*NPNIVQNLTID*G*LRLGKLWPAFNMQFWFVLLLI*GTLKRSSCKL*NRIFTFTLVKVLMNLMNGLKRETLQAFAQNQIMRHLMPLRITSSCHLSCK  636
                F  LK K   +V  L R I    V IG  + L*+S*+ N  +NLT D    R  KL  AFN+     L LI* T K+       +I TFTL ++LM    G +        QN   R LM  R TS   L+ K
Subject   5621  FMPLKRKNSQRVWPLLRTILVVPVRIGQSIKL*YS*SLNCARNLTTDSEVPRPDKL*LAFNILSCADLPLI*DT*KQKWWSHSQKISTFTLGRILMIWHPGSEFTNSMVCVQNLTTRLLMHHRTTSFWPLNWK  6019

Range 9: 5408 to 5473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.0 bits(57) 0.0 12/22(55%) 0/22(0%) Plus/Plus
Query       25  VKDLKAFTLDIRVMIPSLF*WL  90
                +K +K FT DIR +IP   *WL
Subject   5408  LKGMKPFTQDIRELIPPRS*WL  5473

Nucleotide Sequence (658 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
66
132
198
264
330
396
462
528
594
658

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
517.9 2208.1 31% 3.519e-146 67% NC_001948
212.3 279.5 18% 3.537e-54 44% NC_029087
159.6 315.9 37% 1.619e-55 38% NC_014821
156.9 326.4 43% 2.019e-54 36% NC_009892
154.1 308.1 37% 4.725e-53 46% NC_003462

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 4028 to 4684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
517.9 bits(1124) 0.0 214/219(98%) 0/219(0%) Minus/Plus
Query        2  TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFL  658
                TGVISDEKFSDAKPWLSGIST DIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDD CKVAKAG+SKKEGWDVVTFEVFLRKV+GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFL
Subject   4028  TGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFL  4684

Range 2: 4030 to 4683 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
430.0 bits(932) 0.0 200/218(92%) 0/218(0%) Plus/Minus
Query        3  RKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHKSIYPGGNN*TSSKITQ*PAFKPETFLRKTSKVTTSHPSFFDLPALATLQPSSISRSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISAVDIPESQGFASLNFSSLMTP  656
                RKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFT  LLSMLYLYV PSSSLSMSLCSAPKIARSFCESYVL HGSPASEMKASLR+ SKH+S+YPGGNN TSSKITQ PAF P TFLRKTSKVTTSHPSFFDLPALATLQ SSISRSFLIEFAKARLGETKVTN PSDLFMKLLYKKLFPAPNVPSTTV+SLG IS VDIPESQGFASLNFSSL+TP
Subject   4030  RKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITP  4683

Range 3: 4028 to 4684 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
341.5 bits(739) 0.0 153/219(70%) 0/219(0%) Plus/Minus
Query        2  EEVMHIVEDCIISKGCSH*TFFEVTW*SRFKHWVHKTSAFYVVPICLSFKQSEYVTLLSSQNCSXXXXXXXXXXWITSK*NESITAYDK*TQIDISRGKQLNLIENHTMTSLQTRNFSKENFKGHYIPPFLL*FACFGNFAAIIHFKIIFD*ICQGSSRGNKSYKFSLRSLHETLIQETLSSPKCAKHDS*LSWLYIRS*YTRKPGFCITELFITYDTS  658
                E+VMHI+EDCIIS+  SH   FEVTW S F+HWVHK  AFYV+PI  + KQS+YVTLLS+QNC ILL +ICAL WITSK*NESIT Y+K   ID+SR KQL+LI+NHT+ SLQ+ NFSKEN K +YIPPFLL*  CF NFAAIIHFKIIFD*IC  +S  NK Y+F+LR  HETL+QETL SPKC KHDS   WL I S YTRKP FCITEL ITY+ S
Subject   4028  EKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS  4684

Range 4: 4030 to 4680 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
322.7 bits(698) 0.0 147/217(68%) 0/217(0%) Minus/Plus
Query        6  WCHK**KVQ*CKTLAFWYINCGYKAKRANCRAWHIWGWKEFLV*EFHEEI*GKICNFCFP*TSLGKFNQK*S*NG*WLQSCQSRQIKEGRVGCSDL*SFP*KSFWFEGWSLCDFR*GSVVSPWIYRFVFTCHTQ*CFHFTCW*SMPEHI*FTEGSSNFGS*AE*HTQTA*RKDI*VQHRKQTFCEPNV*I*TTMSLQKRFNDCSLC*LCNLPQYA*L  656
                W +K**+VQ*CKTLAFWYI   Y AK  +CRAW+IWGW+EFLV EFHE++*G I N CF  T   KFNQK*S*NG* LQSC SR +KEGRVGCS+ * FP*KS   EGW LCDF *G VVS WI+R +   +T *CFHFTCW*SM +HI*  +GS NFG *AE*HT TA* +++*V HRKQ  CEPNV I T MSLQK  +DC   *LCNLP YA*L
Subject   4030  WRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*L  4680

Range 5: 4029 to 4685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
300.3 bits(649) 0.0 151/219(69%) 0/219(0%) Minus/Plus
Query        1  LVS*VMKSSVMQNPGFLVYQLRI*SQES*LSCLAHLGLERVSCIRVS*RDLRENL*LLFPLDEPWQIQSKMILKWMMAAKLPKQANQRRKGGM**PLKFSLEKFLV*RLVIV*FSMRFSCFPLDISICVYLSYAVMLSFHLLVIHARAHMIHRRIEQFWELSRVTYSDCLKERHIGTT*KADVL*TQCLNLDYHVTSKKVQ*LQPLLIMQSSTICMTSS  657
                L  *VM+SSVMQN GFLVY L I SQ +*LSCL HLGL RVSC RVS*+ LR N * LF  D   QIQSKMILKWM+AAKL KQ  QRRKGGM** L+FSLEK   *RL  V*F MR SCF LD SI   L Y VMLSFHLLVIH +AHM  +RI QFW LSRVTY DCL+ + IG T*KA  L*TQC N D HVTSK+ +*L   LIMQSS ICMT S
Subject   4029  LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFS  4685

Range 6: 4065 to 4685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.7 bits(639) 0.0 139/207(67%) 0/207(0%) Plus/Minus
Query        1  GGSHAYCGRLHNQQRLQSLNLF*SDMVV*IQTLGSQNVCFLCCTYMSFLQAV*VCHSAQLPKLLDPSVNHMCSGMDHQQVK*KHHCV*QVNTNRYIQGETTEPHRKSHNDQPSNQKLF*GKLQRSLHPTLPSLICLLWQLCSHHPFQDHF*LNLPRLV*GKQKLQIFPQISS*NSYTRNSFQPQMCQARQLALLALYPQLIYQKARV  621
                G SHAY GRLHNQ++ QS + F*SDM V I+TLGSQ  CFLC TY    QAV*VCHSAQ PKL DP  +HMC  MDHQQVK*KHH V*  + +R IQ ETT PH+KSH+ QPS  +LF*GK Q+ LHPTLPSL  LL QLCS+HPFQDHF*LNL + V  KQ+L+I+PQ  S*NS TRNS QPQM QARQ   LA Y   IYQKA+V
Subject   4065  GESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKV  4685

Elderberry carlavirus C isolate EBCVC, complete genome

Sequence ID: Length: 8613 Number of Matches: 3

Range 1: 3568 to 4152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.3 bits(457) 0.0 91/195(47%) 0/195(0%) Minus/Plus
Query       74  TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPC  658
                TG IS   ++D       +  +    R L V+LGTFGAGKS L+K FM  ++G+ +T+VSPRR LA    +D+++D   +     K++ + W V TFE FL +   ++ G  VI DEVQL+PPGY+DL L ++     I L GDPCQS YDS+KDR     E SDI ++LE K Y YNI SRRFVN  +E RLPC
Subject   3568  TGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPC  4152

Range 2: 3894 to 4043 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 22/50(44%) 0/50(0%) Plus/Minus
Query      183  KIARSFCESYVLWHGSPASEMKASLRMTSKHKSIYPGGNN*TSSKITQ*P  332
                K+  SF  S  LWHGSP+ +M        + +S YPGG + TSS IT  P
Subject   3894  KLCLSFSLS*SLWHGSPSKKMWTPSCSKCRTRSKYPGG*SCTSSIITALP  4043

Range 3: 4089 to 4151 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 12/21(57%) 0/21(0%) Plus/Minus
Query       75  HGSLDSNIGFTKRLLSMLYLY  137
                HG   S + FTKR L ML LY
Subject   4089  HGRRFS*LRFTKRRLKML*LY  4151

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 4

Range 1: 4363 to 4737 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
159.6 bits(342) 0.0 60/125(48%) 0/125(0%) Minus/Plus
Query        5  VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  379
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R+L G+TY++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEF  4737

Range 2: 4084 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 35/73(48%) 0/73(0%) Minus/Plus
Query      440  TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL  658
                TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI NDL
Subject   4084  TGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 3: 4146 to 4301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 20/52(38%) 0/52(0%) Plus/Minus
Query      441  RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA  596
                +S L++ A+  LGETKV  FP D  M  L ++L P P VP    + L + ++
Subject   4146  KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFLSWTAS  4301

Range 4: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 17/35(49%) 0/35(0%) Plus/Minus
Query      276  KSIYPGGNN*TSSKITQ*PAFKPETFLRKTSKVTT  380
                KSIYPGG +* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 4

Range 1: 4208 to 4582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.9 bits(336) 0.0 63/125(50%) 0/125(0%) Minus/Plus
Query        5  VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  379
                V+TFE+FL  ++ +K GH VI DE+QLFPPGY+DL L+   SD  + LAGDPCQS YDS+ DR +     SDI+ +L GK+YRYNI S+RF NP+F SRLPC      +T    +Y ++ ++  F
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTLWDSITQF  4582

Range 2: 3995 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 33/68(49%) 0/68(0%) Minus/Plus
Query      392  ADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKK  595
                A+I  R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K    GK  K
Subject   3995  ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 3: 4207 to 4509 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 36/101(36%) 0/101(0%) Plus/Minus
Query       78  GSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHKSIYPGGNN*TSSKITQ*PAFKPETFLRKTSKVTT  380
                G+ +   GF    LS+LY  + P     MS     K  RS   S  LW GSPA     S  + ++ +S  PGG +* SS IT  P       +R +SKV+T
Subject   4207  GNREEKTGFLNL*LSILYR*LLPFKMWMMSESELAKR*RSSLLS*SLWQGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST  4509

Range 4: 4030 to 4146 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.8 bits(87) 0.0 20/39(51%) 0/39(0%) Plus/Minus
Query      444  SFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVP  560
                S LI  A+  LGETKV  FP D  M  L + L P P VP
Subject   4030  SHLISSARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP  4146

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 4359 to 4733 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
154.1 bits(330) 0.0 58/125(46%) 0/125(0%) Minus/Plus
Query        5  VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF  379
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G++Y++NI S+RF NP+F  RLPC+  K  +T    +Y ++ ++ +F
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF  4733

Range 2: 4080 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 34/73(47%) 0/73(0%) Minus/Plus
Query      440  TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL  658
                TGV+        K   S +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI +DL
Subject   4080  TGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 3: 4142 to 4297 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.3 bits(110) 0.0 24/52(46%) 0/52(0%) Plus/Minus
Query      441  RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA  596
                +S L++ A   LGETKV  FP D  M  L K+LFP PNVP   +S L + ++
Subject   4142  KS*LMDSASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFLSWTNS  4297

Range 4: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      276  KSIYPGGNN*TSSKITQ*PAFKPETFLRKTSKVTT  380
                KSI PGG +* SS  T *P+          SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Nucleotide Sequence (367 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
367

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
278.3 1183.1 29% 2.126e-74 71% NC_001948
59.7 59.7 22% 1.325e-08 29% NC_018714
59.7 59.7 22% 1.325e-08 28% NC_009892
60.2 60.2 16% 9.647e-09 41% NC_028975
60.6 60.6 15% 7.022e-09 45% NC_025388

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 7

Range 1: 1193 to 1558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.3 bits(601) 0.0 115/122(94%) 0/122(0%) Minus/Plus
Query        2  GSLLMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDFFEHLFLFSCLSELIEENVEVVMDNSWFGLGDPQFNRQRAPFFLGSSYWLNSKFSVEHKFSGAI  367
                GSLLMPNISKLVISFFCRMMPNALARLSS+FRECSLDSFVYSLEPFNFSVNLVDIT DFFEHLFLFSCL+ELIEE+VE VMDNSWFGLGD QFNRQRAPFFLGSSYWLNSKFSVEHKFSG I
Subject   1193  GSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTI  1558

Range 2: 1195 to 1557 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.1 bits(474) 0.0 109/121(90%) 0/121(0%) Plus/Minus
Query        3  MAPENLCSTENLELSQYEDPRKNGAL*RLNCGSPSPNQELSMTTSTFSSINSLRQEKRNKCSKKSEVISTKLTEKLNGXXXXXXXXXXXXRKFEESLARAFGIIRQKNDMTNLEMLGISRE  365
                M PENLCSTENLELSQYEDPRKNGAL RLNC SPSPNQELSMT+ST SSINS RQEKRNKCSKKS VISTKLTEKL GSSE TNESSEHSRK EESLA AFGIIRQKNDMTNLEMLGIS+E
Subject   1195  MVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKE  1557

Range 3: 1193 to 1558 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
190.3 bits(409) 0.0 88/122(72%) 0/122(0%) Plus/Minus
Query        2  NGT*KLMLN*EFGVKPI*GPKEEWGPLTIELRIPKSKPRIIHDHLNVLLYQLAEAGEKK*MLKEIRSYIY*VNRKVKWLK*VNK*I**TLPKI*RKPGKSIWHHSAEE*YDQLRNVRHKQRA  367
                +G *KL+LN*+FGV+PI* PK+E GPL IEL +PKSKPRI+HD  NVLL QL  AGE+K*MLKEIRSYI+*+N K+K LK*V+K*I* TL K  R+PG+ IWHH A+E*YDQLRNV HKQRA
Subject   1193  DGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRA  1558

Range 4: 1194 to 1556 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
185.7 bits(399) 0.0 87/121(72%) 0/121(0%) Plus/Minus
Query        4  WHLKTYAQLRIWS*ANMRTQGRMGPSDD*IADPQVQTKNYP*PPQRSPLSTR*GRRKEINAQRNQKLYLLS*PKS*MAQVSKQMNLVNTPENLKKAWQEHLASFGRRMI*PT*KC*A*AES  366
                W LKT AQL+IWS*ANM+TQ R GPS D*I  PQVQTKN P*P QR P ST  GRR+EINAQRNQ+LY L+* K+* AQVS QMNL NT E+ K+AW+ HLAS G+RMI*PT*KC A*A+S
Subject   1194  WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINAQRNQELYPLN*RKN*RAQVSTQMNLANTLES*KRAWRVHLASSGKRMI*PT*KCWA*AKS  1556

Range 5: 1194 to 1556 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.1 bits(343) 0.0 88/121(73%) 0/121(0%) Minus/Plus
Query        4  ALCLCLTFLSWSYHSSAE*CQMLLPGFLQIFGSVH*IHLFTHLSHLTFRLT*XXXXXXXXXIYFFSPASAS**RRTLRWSWIILGLDLGIRNSIVRGPHSSLGPHIGLTPNSQLSISFQVP  366
                ALCLC TFLSWSYHS A *CQM  PG L  F SV *IHL THLS L F L * I*LLISLSIYF SPA  S* RRTL+ SW ILGLDLG  NSI RGP S LG HIG TPN QLS SFQ P
Subject   1194  ALCLCPTFLSWSYHSFAG*CQMHSPGSLLAFESVR*IHLCTHLSPLIFPLI*WI*LLISLSIYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARGPRSFLGLHIGSTPNFQLSTSFQAP  1556

Range 6: 1195 to 1359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 39/55(71%) 0/55(0%) Minus/Plus
Query      201  LSAYA*HF*VGHIILLPNDAKCSCQAFFKFSGVFTRFICLLT*AI*LFG*LSRYN  365
                L AYA HF*VGHIILLP+DAKC+ QA F  S VF RFIC+LT*A+* F * S YN
Subject   1195  LFAYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYN  1359

Range 7: 1396 to 1503 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 26/36(72%) 0/36(0%) Minus/Plus
Query       57  PQRVDRGER*GGHG*FLVWTWGSAIQSSEGPILPWV  164
                P+ VDRG R* GHG FLVWTWG  IQS EGP+L WV
Subject   1396  PK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVLSWV  1503

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 1

Range 1: 1204 to 1449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 24/82(29%) 0/82(0%) Minus/Plus
Query      113  LMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDFFEHLFLFSCLSELIEENVEVVMDNSW  358
                ++P++ ++V  FF ++ PN ++R     ++  LD+F+ +LE FNFS+N  D++ ++ + L   +     I+ NVE    ++W
Subject   1204  MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW  1449

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 1

Range 1: 1208 to 1453 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 23/82(28%) 0/82(0%) Minus/Plus
Query      113  LMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDFFEHLFLFSCLSELIEENVEVVMDNSW  358
                L+PN+ KL+ +FF  + P+++AR    F++ SLD+F+  +E FNFSV    I+  + + +       ++   +++++    W
Subject   1208  LLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW  1453

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 1

Range 1: 1193 to 1366 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 24/58(41%) 0/58(0%) Minus/Plus
Query      191  SLLMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDF  364
                S+LMP  +KL+ + F  ++P  +AR    ++ CSLD F++ LEPF+FSV    I   F
Subject   1193  SMLMPETAKLIGALFASLLPFKMARFFECYKACSLDKFIHDLEPFSFSVETKVINCRF  1366

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 1

Range 1: 1196 to 1363 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 25/56(45%) 0/56(0%) Minus/Plus
Query      197  SLLMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITS  364
                S+LMP  +KL+ S F   +P  +AR    ++ CSLD F++ LEPF+FSV    I S
Subject   1196  SMLMPETAKLIGSLFSSFLPFKMARFFDCYKACSLDKFIHDLEPFSFSVETKVINS  1363

Nucleotide Sequence (327 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
327

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
237.5 765.2 58% 3.365e-62 54% NC_001948
107.4 205.7 23% 1.561e-27 50% NC_008020
102.3 181.4 26% 1.539e-24 38% NC_001361
94.5 187.4 26% 1.125e-24 47% NC_013006
95.0 192.0 26% 1.126e-24 45% NC_016080

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 6350 to 6673 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
237.5 bits(512) 0.0 97/108(90%) 0/108(0%) Plus/Plus
Query        3  RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS  326
                R+MGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGS
Subject   6350  REMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGS  6673

Range 2: 6352 to 6609 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 66/86(77%) 0/86(0%) Minus/Minus
Query        5  NVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS  262
                N D ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SP+  A*+TSIA*LS+QFSRLP+S
Subject   6352  NADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPIS  6609

Range 3: 6358 to 6672 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.3 bits(230) 0.0 59/105(56%) 0/105(0%) Plus/Plus
Query       11  G*SGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAIPGQK*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQISSCRS*RSW*  325
                G  G+L+* LC+ G+LC+  GR  +*ND+  RS   L LC I GQ+ A DEMLNF  +*SY LGLK LA  +YYE* S*S V +*VC C  CA ISS  S* +W*
Subject   6358  GQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*  6672

Range 4: 6357 to 6671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.4 bits(215) 0.0 57/105(54%) 0/105(0%) Minus/Minus
Query       10  YQERYERQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PGIAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPDYP  324
                YQ  YE  LEI*AH +H QTQ  T L*L+YS* S++AK+LRPN *LQ   KLSISS A  *P I H+ +   LL  SSFQ    P   HR P  HN Q + P  P
Subject   6357  YQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCP  6671

Range 5: 6464 to 6670 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 43/69(62%) 0/69(0%) Minus/Minus
Query      117  TRNAMNDNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISDQESHTVVV  323
                TR+ MND WK +HT +T+KLK  Q FN*+IHN   MPNT*GLI SFK + N*ASHL+L+ DQES+T+++
Subject   6464  TRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM  6670

Range 6: 6474 to 6671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.4 bits(167) 0.0 43/66(65%) 0/66(0%) Plus/Plus
Query      127  VCDSWSEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLSFIAFLV  324
                V DSWS  S R*DAQF   LKL IRP*VFG++*+L*I *LK C  LSL V  VC +FQ SFI  LV
Subject   6474  VLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLV  6671

Daphne virus S, complete genome

Sequence ID: Length: 8739 Number of Matches: 3

Range 1: 5892 to 6116 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 45/75(60%) 0/75(0%) Plus/Plus
Query        3  RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI  227
                ++  NL NCIDNYAIEVSYAY+LGEL++  MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ +   GV+
Subject   5892  KETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM  6116

Range 2: 6153 to 6248 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 16/32(50%) 0/32(0%) Plus/Plus
Query      231  MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS  326
                M+ LV     F F  V SVLR PV+ H VPG+
Subject   6153  MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGA  6248

Range 3: 5894 to 6115 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.8 bits(133) 0.0 37/74(50%) 0/74(0%) Minus/Minus
Query        5  ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS  226
                ITP +  +   I+ N  EIE    CLF T   TQL  AS SSSFI    NSP+L A*+TS+A*LS+Q  +L +S
Subject   5894  ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVS  6115

Potato virus M, complete genome

Sequence ID: Length: 8533 Number of Matches: 3

Range 1: 5786 to 5977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 38/64(59%) 0/64(0%) Plus/Plus
Query        3  RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI  194
                ++M NL NCIDNYAIEV+YAY+LGE ++  M+EEEV A YNCVR +VRNKH +R  +  +FE +
Subject   5786  KEMNNLSNCIDNYAIEVAYAYKLGEKAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDVKQVFEVL  5977

Range 2: 6013 to 6114 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.5 bits(58) 0.0 13/34(38%) 0/34(0%) Plus/Plus
Query      225  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS  326
                I M+ +V  L  ++F  + + L  P+VVH VPG+
Subject   6013  IFMDVIVDLLYKYKFERLSNKLVCPIVVHCVPGA  6114

Range 3: 5788 to 5937 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 30/50(60%) 0/50(0%) Minus/Minus
Query        5  CLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS  154
                CLF T   TQL* A+TSSS I+    SPNL A  TS+A*LSMQ  RL +S
Subject   5788  CLFRTMILTQL*NAATSSSSILFTAFSPNLYAYATSMA*LSMQLLRLFIS  5937

Kalanchoe latent virus, complete genome

Sequence ID: Length: 8517 Number of Matches: 3

Range 1: 5856 to 6044 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.5 bits(200) 0.0 33/63(52%) 0/63(0%) Plus/Plus
Query        3  RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA  191
                ++  NL NCIDNYAIEV+YAY++GE ++  MNEEEV+A YNCVR +++NKH ++  +  ++E+
Subject   5856  KETNNLVNCIDNYAIEVAYAYQMGEKAVARMNEEEVDAFYNCVRVIIKNKHLLKSDVRLIYES  6044

Range 2: 6080 to 6181 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 16/34(47%) 0/34(0%) Plus/Plus
Query      225  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS  326
                + M+ LV  LS ++FV + S +  P+VVHSVPG+
Subject   6080  LYMDVLVNYLSKYKFVRLSSCITPPIVVHSVPGA  6181

Range 3: 5858 to 6007 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.1 bits(114) 0.0 32/50(64%) 0/50(0%) Minus/Minus
Query        5  CLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS  154
                CLFL    TQL* ASTSSSF+ +   SP  *A  TSIA*LSMQF+RL +S
Subject   5858  CLFLMMTLTQL*NASTSSSFMRATAFSPIW*AYATSIA*LSMQFTRLLVS  6007

Mirabilis jalapa mottle virus, complete genome

Sequence ID: Length: 8315 Number of Matches: 3

Range 1: 5632 to 5814 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 36/61(59%) 0/61(0%) Plus/Plus
Query        3  RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF  185
                ++  NL NCIDNYAIEVSYAY++GE ++  MNEEEVEA YNCVR +V+NKH ++  I  ++
Subject   5632  KETNNLVNCIDNYAIEVSYAYKMGEKALCKMNEEEVEAFYNCVRIIVKNKHLLKSDIIDVY  5814

Range 2: 5858 to 5956 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 15/33(45%) 0/33(0%) Plus/Plus
Query      228  IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS  326
                IM+ LV  L+ + FV   ++L  P+V+HSVPG+
Subject   5858  IMDVLVDILNKYNFVRHSTLLSIPIVIHSVPGA  5956

Range 3: 5634 to 5783 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 33/50(66%) 0/50(0%) Minus/Minus
Query        5  CLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS  154
                CLFLT  RTQL* ASTSSSFI+    SP L A*+TSIA*LS+Q ++L +S
Subject   5634  CLFLTIMRTQL*KASTSSSFILHRAFSPILYA*ETSIA*LSIQLTKLLVS  5783

Nucleotide Sequence (1147 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
115
230
345
460
575
690
805
920
1035
1147

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
592.6 2630.9 34% 2.264e-168 42% NC_001948
144.5 459.3 29% 8.066e-68 29% NC_009892
117.5 472.2 25% 7.367e-65 42% NC_014821
115.6 418.0 37% 8.968e-61 28% NC_003462
116.5 419.7 29% 1.282e-58 43% NC_018714

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 11

Range 1: 6707 to 7843 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
592.6 bits(1287) 0.0 256/379(68%) 0/379(0%) Minus/Plus
Query       11  EDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPVDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRAL*GRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVIIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKCWEV*RL*GLAXXXXXXXXXXXXXIWRAHQEGCQVSQMKLLRPD*NLWS  1147
                EDE+FIAFTAGVPD+PNL+GRYIKPYSPGCAV GK+NILDEYLSV D SGFDVLFSDPYQNIS+P+EAHFIKSKTCRFG NTCKYL SFGF + SD  D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ +D WLGHW  AAF ++VK  + RGQH SI +  AL GR++K+N+LWS+ ++P+LW    +*EFCA N C+  N +H C +CLEFW  * L L   SL M TA++    V S G   SQ+*L+  AQVR L    R+CWEV*RL*GLA+L+KKLIIIV +  W+       V+QM+LL+P *N WS
Subject   6707  EDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS  7843

Range 2: 6709 to 7842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
489.5 bits(1062) 0.0 231/378(61%) 0/378(0%) Plus/Minus
Query       12  LQRFQSGLKSFI*LTWQPSWWARHMTMLTMIINFFTNMANP*SLQTSQHFLNC*SKRLTWATILN*Y*LPCSPYETTMIITIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPYNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSTG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSS  1145
                LQRF  G KS I* T +      H   LTMIINFF + ANP*SLQTSQH L+   K LTWA + N  *L   P E T+++   AV M KD   N ++Y++QNSKQ +H+   L L Q L+AQNSQ  + +QS G    DH+ L F  RP NA    ID CCPL+  +LT   NAA +QCPSQ S    F PNSQ AEKA +CM+INF LCLVAAM*NQCLSS VGSLDF +VTT  V P TSQG+L SELCA A+STASLPK ISTPSTS+  G+P +T S  SL  LKPK+ RYL VF+PNLQVFD MK ASLG L+F YGSEN+TSKPE S TD+YSSS+  FP TA PGE GLMYLP RLG+SGTPAVKAMK SS
Subject   6709  LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSS  7842

Range 3: 6707 to 7840 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
404.7 bits(877) 0.0 208/378(55%) 0/378(0%) Plus/Minus
Query       14  PKISVWPQKLHLTHLATFLVGSPYDNVNNDNQFLHQYG*PLKPSNXXXXXXXXXXXXXXGHNSQLILTPL*PL*DNHDYHHYCCRHVXXXXXXXXXXXEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLPMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFTKSAGL*LYEVSLPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPFYSTTRRVWLDVPPREVGSVGNAGRKGYETLVL  1147
                P I    QK HL H        P+   NNDNQFL Q+G*PLKPSNLPA P    Q PHLG + Q  LT   P * N    HYCC H QG G QLQ L  PEFQTD+T M A+  +T IKGTKFSD P  PELG DC GPQ V+L VPSL*RPP GN* MLSPE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFLP+SC SNV+PV I+ G I *FQ   ++K  TS  TR FE  ++R+  I+CLL KA *H  NI  K R  N F++ VT  +KT+G K+   I  K    *L E+ L  N D+L+WVR+ H+KT  +   Q+LIKY+  P++ T  R+ L+VP  E+ +V N   + YE L+L
Subject   6707  PAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILIL  7840

Range 4: 6708 to 7544 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.0 bits(727) 0.0 174/279(62%) 0/279(0%) Minus/Plus
Query      310  RTRVS*PLRPAFPTLPTSLGGTSSHTLLVVL*KGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGRLTS*SQRPADLVKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*FAXXXXXXXXXXXXXXISNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIGRN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSG  1146
                R R+S*  +  F T   S  GT S  L  V  +G+  YLMS C    F VL C   TH K S F  R  S SQ+   L  I  + F P VL   VT   K L  R L  ML+ C*+AL RRQ I  LR    SN+LV+ EV  L    +*NQ I+P  I TG TLL QD GRN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSG+FGQSENFVPL++VI L A I+VLSVWNSG
Subject   6708  RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG  7544

Range 5: 7590 to 7841 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
81.3 bits(171) 0.0 45/84(54%) 0/84(0%) Minus/Plus
Query       13  QQ*W**SWLSHKGYRGVNIN*ELWPK*GACFNS*GSAGRFEGFRG*PYW*RN*LSLLTLSYGEPTRKVAR*VK*SF*GQTEIFG  264
                QQ*W    L H G+  VN +*+L PK*G C +  G AGRFEGFRG*P  *RN*LSLL    G+   +  R*+K* F*   +I G
Subject   7590  QQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAG  7841

Range 6: 7516 to 7851 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.1 bits(439) 0.0 92/112(82%) 0/112(0%) Minus/Plus
Query        3  YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HCHMASPPGRLPGESNEAFEARLKSLELAR  338
                YMY LFGILVLVG  IA  ILAHVDS++G++ GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS   EEIDYHC*   MAS  G+LPGESNEAFEARLKSLELAR
Subject   7516  YMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELAR  7851

Range 7: 7036 to 7458 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
135.8 bits(290) 0.0 77/141(55%) 0/141(0%) Minus/Plus
Query      396  C*GCANLLWQGGS*FSGCA*FRFQTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*EEIDHHAVKCLFSNLRIGPKLSPR*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVIGTAPKA*HIVVPNSHSQALGF  818
                C*  AN+LW GGS    CA    Q +L*  R   *     EIK S+ R *ALVLHCC KT  EID+HAV+CLFS+LRIG K    *+LAWAL  CCI * SQI   QGTT IN    GV GT  K *  VV ++ S ALG+
Subject   7036  C*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGY  7458

Range 8: 6709 to 6981 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 38/91(42%) 0/91(0%) Minus/Plus
Query      873  GREFHSLYGRRSRHSQPLWEVHQAILSWLCCKREDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGSLHKVKDLQIW*KYM*VPSVLWF*  1145
                G EFHS + R SR      +VH A+ S +C  RE  +T**V V    F F*  +  PI K+Q S  G+ H+VK+L +W +Y+ +  +L F*
Subject   6709  G*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF*  6981

Range 9: 7533 to 7853 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 80/107(75%) 0/107(0%) Plus/Minus
Query        1  ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP  321
                ALA+S DFS ASKASFDSPG+ P  LAI   *Q**SISS   LTPKAFKPPSTS TV+A ASLGPQFSI IDSPVALM+QP   PLLLST ARI +AI  PT+TRIP
Subject   7533  ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIP  7853

Range 10: 7155 to 7481 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 66/109(61%) 0/109(0%) Plus/Minus
Query      373  HKILRLTKKPRAWE*LFGTTICYAFGAVPITPSMWKLMYVVP*VWQI*LS*EMQHXXXXXXXXXXGDSFGPIRRLLKRHFTA**SISSYVLLQQCRTSAYHRRSDPLIS  699
                HKILRL + PRA E L  TT+ Y F  VP+TP++ +LM VVP*+  I*L  +MQH+ NAQAN Q    F PIRRLLKRH TA* SIS  VL QQC+TSAY    D LIS
Subject   7155  HKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS  7481

Range 11: 6768 to 6980 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 30/71(42%) 0/71(0%) Plus/Minus
Query      874  *NQRTEGTYMYFHQICRSLTL*SEPPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSLLQHNQESMA*CT  1086
                *N+R +    Y  Q  + LT *+ P  E * F MG +   QN K   +T THQV   SL  H  E+ A*CT
Subject   6768  *NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CT  6980

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 7

Range 1: 6638 to 7069 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 63/144(44%) 0/144(0%) Minus/Plus
Query      698  AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL  1129
                AF+ G PD PN+ GRYIK    G    G   ILDEYLS    +GFD  FSDP+QN      AHF+   + RFG NT   L S G++++S + DE+I  + F  ++EG +IC  K   D    ++ +++LPC+VRG+TF+VVT +
Subject   6638  AFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI  7069

Range 2: 7163 to 7381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 41/73(56%) 0/73(0%) Minus/Plus
Query      391  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFG  609
                MP  QP +++K++ PL IGL +G+V+  L +S LP++GDNIH  PHGG Y DGTK I YCGPK+SFP+ G+ G
Subject   7163  MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG  7381

Range 3: 7446 to 7601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 15/52(29%) 0/52(0%) Minus/Plus
Query      162  ILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK  317
                +++ V AA+  LI+ ++         C I  TGES+ + NC  S      +K
Subject   7446  VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLSPEFLEVLK  7601

Range 4: 7109 to 7150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 9/14(64%) 0/14(0%) Minus/Plus
Query      617  YIAATRHRKKLIIM  658
                YIA TRH KK+ I+
Subject   7109  YIALTRHSKKIQIL  7150

Range 5: 7162 to 7380 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 29/73(40%) 0/73(0%) Plus/Minus
Query      392  PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGI  610
                PK+P +G    GPQ ++ LVPS * PP G * MLSP  G    ++   T P  +P+  G     +  GC +GI
Subject   7162  PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI  7380

Range 6: 6883 to 7065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 26/61(43%) 0/61(0%) Plus/Minus
Query      702  KVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPK  884
                KVTTS V PRT QGSL S+     KS+     Q++ PS+S       ++SS L+L  L P+
Subject   6883  KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR  7065

Range 7: 6637 to 6828 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 26/64(41%) 0/64(0%) Plus/Minus
Query      939  K*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKA  1130
                K*A   +  F* GSE   S P  +  +RYSSSM   P    P     M  P+  G SG+P  KA
Subject   6637  K*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKA  6828

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 8

Range 1: 7347 to 7601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
117.5 bits(250) 0.0 43/85(51%) 0/85(0%) Minus/Plus
Query      355  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVI  609
                MPF QP +++K++ P+ IG  + LVL  L +S LP  GDNIH  PHGG Y+DGTK I+YCGPK SFPSS L       + ++I++
Subject   7347  MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSLISSGTPMIIIVILL  7601

Range 2: 6821 to 7129 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 45/103(44%) 0/103(0%) Minus/Plus
Query      821  AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL  1129
                A T GVP+  N+ G YIK    G   +G  +ILDEYLS    +GF+ LFSDPYQN      AHFI   + RFG  T + L + G+N+ S + D V   + F L
Subject   6821  AVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL  7129

Range 3: 7130 to 7264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 22/45(49%) 0/45(0%) Minus/Plus
Query      689  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR  823
                ++ EG +IC  KE  D  A H+ ++KLPC+VRGATFD VT +  +
Subject   7130  VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK  7264

Range 4: 7581 to 7631 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 11/17(65%) 0/17(0%) Minus/Plus
Query      319  LIIVIVLTASIYVLSVW  369
                +IIVI+LTA+IYV   W
Subject   7581  IIIVILLTAAIYVSERW  7631

Range 5: 7292 to 7336 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.3 bits(51) 0.0 8/15(53%) 0/15(0%) Minus/Plus
Query      617  FYIAATRHRKKLIIM  661
                +Y+A TRHR KL+++
Subject   7292  WYVALTRHRHKLVLV  7336

Range 6: 7126 to 7326 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 30/67(45%) 0/67(0%) Plus/Minus
Query      627  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS  827
                N  LCLV+A      ++      + KVT S VAPRT QG+L S  C A KS+ S  +QI  PS S S
Subject   7126  NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS  7326

Range 7: 7334 to 7549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.5 bits(106) 0.0 31/72(43%) 0/72(0%) Plus/Minus
Query      407  LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHD  622
                LG + LGPQ ++LLVPS * PP G   MLSP  GK   ++   T+    PI  G  +L    G  KGI + D
Subject   7334  LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILIRD  7549

Range 8: 6820 to 6975 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 22/52(42%) 0/52(0%) Plus/Minus
Query      975  GSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKA  1130
                GSEN   KP     DRYSS M   P    P    L+ +P     SGTP V A
Subject   6820  GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTA  6975

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 7

Range 1: 7378 to 7650 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 42/91(46%) 0/91(0%) Minus/Plus
Query      343  SEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA  615
                + MPF QP +++K++ P+ +G+ + +VL  L +S LP  GDNIH  PHGG Y+DGTK I+YCGP+ SFPSS L       +  II+ ++ A
Subject   7378  TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPRDSFPSSSLISSGTPMIIGIIIFLIFA  7650

Range 2: 6858 to 7166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.3 bits(195) 0.0 45/103(44%) 0/103(0%) Minus/Plus
Query      821  AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL  1129
                A T GVP+  N+ G YIK    G   +G  +ILDEYLS    +GF+ LFSDPYQN      AHFI   + RFG  T + L   G+N+ S + D V   + F+L
Subject   6858  AVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL  7166

Range 3: 7167 to 7301 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query      689  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR  823
                ++ EGV+IC  K   D    H+ ++K PC+VRGATFD+VT +  +
Subject   7167  IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK  7301

Range 4: 7676 to 7834 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.6 bits(54) 0.0 15/53(28%) 0/53(0%) Minus/Plus
Query      162  GILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK  320
                G+ V        ++L        ++  C I  TGES+ +  C  SEA    VK
Subject   7676  GLAVAAAVVAYLVLLLAQQLYMSNSSQCTIVITGESVSVVGCVYSEAFIELVK  7834

Range 5: 7163 to 7285 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 23/41(56%) 0/41(0%) Plus/Minus
Query      705  VTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS  827
                VT S VAPRT QG+L S LC   KS+    +QI TPS S S
Subject   7163  VTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS  7285

Range 6: 7425 to 7586 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 23/54(43%) 0/54(0%) Plus/Minus
Query      407  LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG  568
                LG + LGPQ ++L VPS * PP G   +LSP  GK   +   ST     P   G
Subject   7425  LGKESLGPQ*LILFVPS**LPP*GKL*ILSPTCGKVLLVNVNSTTATAMPTAIG  7586

Range 7: 6857 to 7051 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 26/65(40%) 0/65(0%) Plus/Minus
Query      936  MK*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKA  1130
                MK*A   +  F  GSE     P     D+YSS M   P    P    L+Y+P  L  SGTP V A
Subject   6857  MK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTA  7051

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 6

Range 1: 7352 to 7618 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
116.5 bits(248) 0.0 43/89(48%) 0/89(0%) Minus/Plus
Query      343  MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA  609
                MPF QP +++K++ P+ +G+ + +VL  L +S LP  GDNIH  PHGG Y+DGTK I+YCGPK SFPSS L       +  II+ ++ A
Subject   7352  MPFSQPPDYSKSVFPVAVGVAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKDSFPSSSLISSGTPLIVGIIIFLIFA  7618

Range 2: 6826 to 7134 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
92.7 bits(196) 0.0 45/103(44%) 0/103(0%) Minus/Plus
Query      821  AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL  1129
                A T GVP+  N+ G YIK    G   +G  +ILDEYLS    +GF+ LFSDPYQN      AHFI   + RFG  T + L   G+N+ S + D V   + F+L
Subject   6826  AVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL  7134

Range 3: 7135 to 7269 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 20/45(44%) 0/45(0%) Minus/Plus
Query      689  LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR  823
                +D EGV+IC  +   D    H+ ++KLPC+VRGAT+D+VT +  +
Subject   7135  VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK  7269

Range 4: 7351 to 7554 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 29/68(43%) 0/68(0%) Plus/Minus
Query      407  LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGI  610
                LGN+  GPQ ++ LVPS * PPCG   +LSP +GK   ++  ST     P   G  +L    G  KGI
Subject   7351  LGNESFGPQ*LIRLVPSW*LPPCGKL*ILSPTWGKVLLVKVKSTTATATPTATGKTLLE*SGG*EKGI  7554

Range 5: 7131 to 7331 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 31/67(46%) 0/67(0%) Plus/Minus
Query      627  NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS  827
                N  LCLV A     L+S         VT S VAP T QGSL S LC   KS+    +QI TPS S S
Subject   7131  NLVLCLVKATKRSGLTSSSRGFS*INVTMSYVAPLTWQGSLYSTLCHLRKSSTLSSRQIITPSGSTS  7331

Range 6: 6816 to 6989 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.1 bits(92) 0.0 26/58(45%) 0/58(0%) Plus/Minus
Query      966  F*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKL  1139
                F*YGSE    KP     DRYSS +  FP    P    LM +P     SGTP V A  L
Subject   6816  F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML  6989

Nucleotide Sequence (350 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
350

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 3227 to 3574 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.4 bits(562) 0.0 105/116(91%) 0/116(0%) Plus/Plus
Query        2  QIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALKAGIRSFVESERLISSDLSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILSSK  349
                QIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDG ALKAGIRSFVESERL+S DLSAP ISKQLEENA AE+EMIALFCIRHHVR IV+TPEYEVSWKFGE EWPLCGIL  K
Subject   3227  QIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLK  3574

Range 2: 3262 to 3573 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
212.4 bits(460) 0.0 90/104(87%) 0/104(0%) Minus/Minus
Query       37  LEERIPHRGHSLSPNFQLTSYSGVTTISLTWCRIQNNAIISLSAQAFSSNCLEIVGAERSELIRRSLSTKDRMPAFRAKPSVLSKKPTECQKQLPSPGTEKVLK  348
                L +RIPHRGHS SPNFQLTSYSGV TI LTWCR+QNNAIIS SA AFSSNCLEI GAERS L +RSLSTKDR+PAFRA PSVLSKKPTECQKQLPSPGTEKVLK
Subject   3262  LRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLK  3573

Range 3: 3227 to 3565 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
199.5 bits(429) 0.0 85/113(75%) 0/113(0%) Minus/Minus
Query        2  KNST*GPLTFPKFPTNFIFWCYYYQPYVVPDTK*CNHLTLGTSILLQLFRNSWS*KI*TNKALTLHKRSNAGLQSKTISTEQETN*MPKAIAITRYGESVKIINIIISTCLNL  340
                KNST*GPLTFP+FPTNFIFWC +Y+PYVVP+ +*C+HL LG SIL QLFRN W *KI T +ALTLH+RSN GL  K+IS + +TN MPKAIAITR+ ESVKIINIIISTCLNL
Subject   3227  KNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNL  3565

Range 4: 3228 to 3485 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
149.5 bits(320) 0.0 64/86(74%) 0/86(0%) Minus/Minus
Query        3  RGAGYKIMQSSHSRHKHSPPIV*K*LELKDLN**GAHSPQKIECRPSEQNHQY*ARNQLNAKSNCHHQVRRKC*NHQYHNQHMPQS  260
                RGA  +IM+SSHSRHKHS PIV*K L LKDL+   AHSP+KIE RP  Q HQ * +NQ NAKSNCHHQ +RKC*NHQYHNQHMPQS
Subject   3228  RGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQS  3485

Range 5: 3522 to 3566 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 13/15(87%) 0/15(0%) Minus/Minus
Query      297  KEFHIGATHFPQISN  341
                KEFHIGATH P+ISN
Subject   3522  KEFHIGATHLPRISN  3566

Range 6: 3226 to 3381 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
91.8 bits(194) 0.0 40/52(77%) 0/52(0%) Plus/Plus
Query        1  PD*GMC*L*Y**F*HFLRTW*WQLLLAFSWFLAQY*WFCSEGRHSIFCGE*A  156
                PD*GMC*L*Y**F*HFL  W*WQLLLAF WF   +*W C +GR+SIF GE*A
Subject   3226  PD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*A  3381

Range 7: 3421 to 3564 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 39/48(81%) 0/48(0%) Plus/Plus
Query      196  TIGGECLCRE*DDCIILYPAPRKADSSNTRI*S*LEIWGK*VAPMWNS  339
                TIG ECLCRE*DD IIL+ APRKA S +TRI*S*LEI G+*VAPMWNS
Subject   3421  TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNS  3564

Range 8: 3348 to 3566 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
108.7 bits(231) 0.0 57/73(78%) 0/73(0%) Plus/Plus
Query      123  RPAFDLLWRVSAXXXXXXXXXXXXNNWRRMLVPRVR*LHYFVSGTT*G****HQNMKLVGNLGKVSGPYVEFF  341
                RP FDL WRVSA  VQIFQ Q FLNNW+RML+PR+R* HY   GTT*G ** HQNMKLVGN GKVSGPYVEFF
Subject   3348  RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFF  3566

Range 9: 3228 to 3308 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 25/27(93%) 0/27(0%) Plus/Plus
Query        3  RLRHVLIMILMILTLSPYLVMAIAFGI  83
                RLRHVLIMILMILTLS  LVMAIAFGI
Subject   3228  RLRHVLIMILMILTLSLCLVMAIAFGI  3308

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 4

Range 1: 3316 to 3417 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 19/34(56%) 0/34(0%) Plus/Plus
Query       23  YDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALK  124
                ++ D F++F V  DGNCFWHSVG L+  DG  LK
Subject   3316  FEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK  3417

Range 2: 3430 to 3597 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 20/56(36%) 0/56(0%) Plus/Plus
Query      152  ERLISSDLSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKFGESE  319
                ++ +   +  P +SKQLE N  AE E +A FC  + +RL V+    E +W F   E
Subject   3430  DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHE  3597

Range 3: 3330 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.6 bits(76) 0.0 16/29(55%) 0/29(0%) Minus/Minus
Query       37  FRAKPSVLSKKPTECQKQLPSPGTEKVLK  123
                F+  PS     PTECQKQLPS  T K  K
Subject   3330  FKYSPSTPINGPTECQKQLPSASTSKEWK  3416

Range 4: 3459 to 3524 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.8 bits(48) 0.0 12/22(55%) 0/22(0%) Minus/Minus
Query      181  QNNAIISLSAQAFSSNCLEIVG  246
                Q  A  SLSAQ F S+CL  +G
Subject   3459  QK*ATASLSAQVFPSSCLLNLG  3524

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 2

Range 1: 3170 to 3283 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 22/38(58%) 0/38(0%) Plus/Plus
Query       23  YDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALKAGIR  136
                ++ D+F+ F VPGDGNCFWHSVG L+  DG  LK  +R
Subject   3170  FNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLKGILR  3283

Range 2: 3284 to 3439 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.7 bits(65) 0.0 14/52(27%) 0/52(0%) Plus/Plus
Query      152  ERLISSDLSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKF  307
                ER   + ++   + +Q+  +  AE E +A FC  + ++L V++    V+W F
Subject   3284  ERCGRNGITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIF  3439

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 4

Range 1: 3315 to 3416 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 19/34(56%) 0/34(0%) Plus/Plus
Query       23  YDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALK  124
                ++ D F++F V  DGNCFWHSVG L+  DG  LK
Subject   3315  FEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK  3416

Range 2: 3450 to 3596 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 20/49(41%) 0/49(0%) Plus/Plus
Query      173  LSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKFGESE  319
                +  P +SKQLE N  AE E +A FC  + +RL V+    E +W F   E
Subject   3450  VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHE  3596

Range 3: 3329 to 3415 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.7 bits(72) 0.0 15/29(52%) 0/29(0%) Minus/Minus
Query       37  FRAKPSVLSKKPTECQKQLPSPGTEKVLK  123
                F+  PS     PTECQKQ PS  T K  K
Subject   3329  FKYSPSTPINGPTECQKQFPSASTSKEWK  3415

Range 4: 3458 to 3583 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.0 bits(55) 0.0 19/42(45%) 0/42(0%) Minus/Minus
Query      181  NFQLTSYSGVTTISLTWCRIQNNAIISLSAQAFSSNCLEIVG  306
                N Q+ S    +T SL     Q  A  SLSAQ F SNCL  +G
Subject   3458  NIQVHSSLV*STFSLIP*WEQK*ATASLSAQVFPSNCLLNLG  3583

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 2

Range 1: 3319 to 3420 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 17/34(50%) 0/34(0%) Plus/Plus
Query       23  YDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALK  124
                ++ D +++F V  DGNCFWHSVG L+  DG  +K
Subject   3319  FEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIK  3420

Range 2: 3454 to 3600 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 19/49(39%) 0/49(0%) Plus/Plus
Query      173  LSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKFGESE  319
                +  P +SKQLE N  AE E +A FC  + ++L V+    E +W F   E
Subject   3454  VKCPRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHE  3600

Nucleotide Sequence (675 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
68
136
204
272
340
408
476
544
612
675

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
476.7 1544.6 30% 9.454e-134 44% NC_001948
166.0 480.8 21% 8.457e-69 33% NC_009991
164.6 457.3 18% 5.128e-67 36% NC_009892
168.3 453.9 37% 7.037e-67 31% NC_011525
165.1 384.6 32% 7.034e-67 40% NC_028111

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 9

Range 1: 536 to 1204 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
476.7 bits(1034) 0.0 193/223(87%) 0/223(0%) Minus/Plus
Query        6  SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL  674
                +L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LV SPESLNPWAYQY+I+  Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSGSLL
Subject    536  TLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSGSLL  1204

Range 2: 538 to 1203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
383.2 bits(830) 0.0 175/222(79%) 0/222(0%) Plus/Minus
Query        7  SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMASKPEKHRMLETRRLLIGVKLSK**QNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLS  672
                S+EPLLPQ +TSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGS+S MP+ASKPEKHRM E +RL IGVKLSK * NFE   ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS W   ILYW*AQG +LSGE T  SGGITAVA+SMLGL TS+K++RS IDQ**ISS RKRFLAPVEITRGTN  S
Subject    538  SKEPLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMSTE*REPSGRTTDLALSRYLHDKGCEYISFQLPSGAKSSWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRS  1203

Range 3: 543 to 1199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.3 bits(374) 0.0 103/219(47%) 0/219(0%) Plus/Minus
Query       11  ESHFFHNL*QVKQNPQ*I*SPFQLVCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPGSSYACRDLEAPNP*CRWRQNQRNTEC*KLEDY*LG*SSVSDDRILNGGHRPHSVNHQIRPQT*L*ANTYLTMVVNTFHTSYHPEQRAFGPQKFYTGKPKGLSFQESXXXXXXXXXXXXEACWA*PLPGR**DHV*TSNEFHHGEKDSLHL*R*HEGPIS  667
                +SH  HNL  V++NP+*  SP   V  *     PRQ PY A * FSNKDI * QHHD  GS+ ACR LE  +  C   ++Q+N  C K +DY  G*+  S D IL+   +P SV+H+   Q   *A   +T VV+T H+S H  +RA G   FYTG+PKG    ESQ      L  L  AC A   P  * DH  TS+E HH EKDS HL + H GPIS
Subject    543  KSHSSHNLLLVRKNPR*TLSPSLWVFL*VVEALPRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE*CQPSSVSHRAELQIWP*AGICMTKVVSTSHSSCHLVRRAVGCH*FYTGRPKG*DSLESQPALLEGLLQLPRACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPIS  1199

Range 4: 736 to 1197 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 71/154(46%) 0/154(0%) Minus/Plus
Query       13  V*NF*GPNALCSGW*LV*NVFTTIVK*VFA*S*VCGLI*WFTLCGRCPPFKILSSLTELHPNQ*SSSF*HSVFLWF*RHRH*GFGASKSRHA*LLPGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTNWKGD*IH*GFCFTCHKLWKKWL  474
                V*N   P AL + W L *+V TT V  + A   +C    W TL G     KI S L   HP  *S  F H++F W   +RH     SK RHA LLP  S*CC *+ISLFEN Q+A *G+CRG+ ++ +R+T+ +GD ++ GF  T +KLW++WL
Subject    736  V*NQWQPTALRTRWQLE*DVLTTFVMQIPAQGQICSSARWLTLLG*HHSLKI*SPLA*FHPYG*SFDFKHAMFFWLRCNRHKRS*TSKPRHAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEWL  1197

Range 5: 544 to 663 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 23/40(57%) 0/40(0%) Minus/Plus
Query      547  EIGPSCYLYRCKESFSP**NSLLVYT*SHHLPGSG*AQHA  666
                EIGP+C  +RC+ESFS **+SLLV  *S    G   A+HA
Subject    544  EIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHA  663

Range 6: 881 to 1198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
93.6 bits(198) 0.0 51/106(48%) 0/106(0%) Plus/Minus
Query       12  RATSSTTYDK*SKILNEFNLPSSWFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHREAAMHAAT*RLQILNADGVKTRETPNVRN*KIIDWGEAQ*VMTEF*M  329
                RAT  T Y  * KIL++  LP   F  +L++  LGR LI L E SQIKIY S NIMM+ EA +HAA *R +I  A  ++ R+T +V + KI   GE + V+T+F*+
Subject    881  RATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*V  1198

Range 7: 548 to 826 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 41/93(44%) 0/93(0%) Plus/Minus
Query      384  KQIPT*QWL*IHFTPVTIRSKEHLALRNSILVSPRV*AFRRVNKDFRGYYSCCKKHVGPNHFQEGDEITYRPVMNFIMEKKIPCTCRDNTRDQ  662
                +Q+  *Q L*+H  PV I  +E L   + ILV PRV    R N+ F   Y  C++H    + Q+ D+IT  PV+N IM+KKIP TC + T DQ
Subject    548  EQVSA*QRL*VHLIPVAIWCEEQLVAIDFILVGPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQ  826

Range 8: 738 to 1199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.7 bits(233) 0.0 67/154(44%) 0/154(0%) Minus/Plus
Query       11  IEFLRAKCSLLRMVTGVKCIHNHCQVGICLKLGLWSYLMVHAMRSMSSIQNSVITY*ASPQSIIF*FLTFGVSLVLTPSALRIWSL*VAACIAASRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNQLEGRLNSLRILLHLS*VVEEVAL  472
                I+ +   CS  +M TG++C HN C    C +  L    M HA R  S  QN V T   SP  +IF*  T  V L     A +I +L* AAC  AS+ IMML L+YIFI*E S+S IR+LPR++  +   N   GR +  RI  H  *+V  VAL
Subject    738  IKSMATNCSSHQMATGMRCTHNLCHADTCSRPDL*FCPMAHATRLTSFTQNLVTTCLVSPLWVIF*LQTCDVFLASMQ*A*KILNL*AAACTVASQYIMML*LRYIFI*ELSRSQIRSLPRQSFDNS*KNPQGGR*SLSRIFPH***IVGGVAL  1199

Range 9: 540 to 671 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 21/44(48%) 0/44(0%) Minus/Plus
Query      539  SRNWSLVLSLQVQGIFFSMMKFITGLYVISSPSWKWLGPTCFLQ  670
                S +WS V   QV GIFF MM+F TG  VI S  W      C  Q
Subject    540  SGDWSHV*FPQVPGIFFCMMRFTTGQLVI*SIFWTLPSQACSWQ  671

Phlox Virus B, complete genome

Sequence ID: Length: 9058 Number of Matches: 7

Range 1: 538 to 918 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.0 bits(356) 0.0 67/127(53%) 0/127(0%) Minus/Plus
Query      294  SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  674
                +LK LVP ++   A++LF+HDEIHYWS RDLITFLEV++P ++ AT V PPE+LV S  SL  W Y++ +      F PDG   E Y QPL + YLLKA+ ++L DG  Y VDV+ SKF HHL++ T
Subject    538  TLKDLVPELMRKSAKHLFMHDEIHYWSARDLITFLEVIQPEVMYATMVYPPELLVGSKFSLFKWCYEFDVIGNDFFFYPDGVRTEGYLQPLKNGYLLKAKRILLPDGGVYHVDVVQSKFAHHLIAIT  918

Range 2: 940 to 1203 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.6 bits(246) 0.0 49/88(56%) 0/88(0%) Minus/Plus
Query        6  NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL  269
                N+R F  FDA   + LEPL+  +  CFPV  +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS     S+L
Subject    940  NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIISTNTIKSIL  1203

Range 3: 963 to 1175 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 32/71(45%) 0/71(0%) Plus/Minus
Query       34  MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMAS  246
                M ++AKS  NLIS P G  I+  + A AD  SGF  V + RY L TTS  TGKQ     + GS     +AS
Subject    963  MINDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS  1175

Range 4: 540 to 719 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
45.5 bits(93) 0.0 29/60(48%) 0/60(0%) Plus/Minus
Query      493  KLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLS  672
                +L+ + T  SGG T VA    G  TSR VMRSR  Q* ISS   R LA   ++ GT  LS
Subject    540  RLNLDPTNNSGGYTMVAYMTSG*ITSRNVMRSRALQ*CISSCINRCLADFLMSSGTRSLS  719

Range 5: 765 to 905 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 20/47(43%) 0/47(0%) Plus/Minus
Query      307  K**QNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAK  447
                K*  N    TST *  PS      ALS+    NGC   S   PSG K
Subject    765  K*CANLLCTTSTW*TPPSGSNIRFALSR*PFFNGCR*PSVLTPSG*K  905

Range 6: 937 to 1173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 29/79(37%) 0/79(0%) Plus/Minus
Query       36  DK*SKILNEFNLPSSWFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHREAAMHAAT*RLQILNADGVKTRETPNVR  272
                D+* K+L EFNL + WF  +L +F  GR  I L +  QI ++  N +  +REA  + A   L  L +  +K  + P+VR
Subject    937  DQ*RKVLKEFNLHT*WFRYQLAEFSHGRLDIWLLQCPQISVHPGNYLKRNREAV*NIACQWL*PLASCCIKWSKCPDVR  1173

Range 7: 583 to 672 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 10/30(33%) 0/30(0%) Plus/Minus
Query      540  CKKHVGPNHFQEGDEITYRPVMNFIMEKKI  629
                C   +  N+FQ+  EI   P+M  I+ K++
Subject    583  CVHDLWLNNFQKCYEIARTPIMYLIVHKQV  672

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 6

Range 1: 545 to 925 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 66/127(52%) 0/127(0%) Minus/Plus
Query      294  SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  674
                S+K L+P+ +S  +R  FLHDEIHYWS   LI FL  V+P M+LAT V PPEIL  + ESLNPW Y+++I+   +++APDG   E Y QPLS  YLLK   + L DGS Y++D++ S F HHL+  T
Subject    545  SIKDLLPQCVSDSSRRFFLHDEIHYWSKEALINFLVSVQPEMILATVVYPPEILAGAKESLNPWCYKFQINGDDLIYAPDGCMQEAYIQPLSGCYLLKTSGIELPDGSFYSLDLVKSTFSHHLICIT  925

Range 2: 935 to 1189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 43/85(51%) 0/85(0%) Minus/Plus
Query       27  LLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISC  281
                L+   +R FSGF+A   K + PL R + SCFP+H +++ +IY YLRTLKKPD +S+ AKL Q++  PTG EIKF E+F+ L+++C
Subject    935  LINQKMRPFSGFEATSSKGISPLMRKVGSCFPIHPNLILRIYRYLRTLKKPDLQSSMAKLSQVLPNPTGPEIKFFEEFSKLLLNC  1189

Range 3: 958 to 1188 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 37/77(48%) 0/77(0%) Plus/Minus
Query       28  QLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMASKPEK  258
                QL  +   SS NLIS PVG   +* +FA  D  SGF  VLK*RYIL     C GKQ    R++G      +ASKP K
Subject    958  QLSNNFENSSKNLISGPVGFGRT*LSFAMDDWRSGFFSVLK*RYILRIKFGCIGKQEPTLRIKGEIPFEEVASKPLK  1188

Range 4: 544 to 732 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
49.6 bits(102) 0.0 30/63(48%) 0/63(0%) Plus/Minus
Query      487  GFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSE  675
                GFKLS    +ISGG T VAR + G T +RK +R+ + Q**ISS RK+ L   E   G+    E
Subject    544  GFKLSLAPAKISGG*TTVARIISG*TETRKFIRASLLQ**ISS*RKKRLEESETH*GSRSFIE  732

Range 5: 959 to 1168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 25/70(36%) 0/70(0%) Plus/Minus
Query       48  KILNEFNLPSSWFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHREAAMHAAT*RLQILNADGVKTRE  257
                K+L E N   S     LT+F  G   IRL +  QI IY  + I M+RE   +    R   L   G+K  E
Subject    959  KLLKELNFWPSGIWKNLTEFCHG*LEIRLLQRPQIAIYSEDQIWMYRETGTNLTHQRRNTL*GGGLKAAE  1168

Range 6: 656 to 745 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 13/30(43%) 0/30(0%) Plus/Minus
Query      474  LVSPRV*AFRRVNKDFRGYYSCCKKHVGPN  563
                LV+P V*AF   +++FR   +C K H+  N
Subject    656  LVAPWV*AFFGSSQNFRRVDNCSKDHLWLN  745

Potato latent virus, complete genome

Sequence ID: Length: 7890 Number of Matches: 5

Range 1: 552 to 929 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.3 bits(361) 0.0 66/126(52%) 0/126(0%) Minus/Plus
Query      294  LKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  671
                L++LVP ++   A+NLFLHDE+HYW+ RDLITFLEV++P+ LL T V PPE+L  + +SLN W Y YR+ + ++ F PDG   E Y QPLS  YLL+   +   DG  Y VDV+ SKF HHL++ T
Subject    552  LRELVPELMIKSAKNLFLHDELHYWTHRDLITFLEVLKPDKLLGTLVYPPELLKGAKKSLNSWCYTYRVDKDKLFFYPDGVHSEGYEQPLSGGYLLETSRITTRDGEVYCVDVVCSKFAHHLIAIT  929

Range 2: 936 to 1217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 50/94(53%) 0/94(0%) Minus/Plus
Query        3  NLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLD  284
                +L+V   R F+ F+AI  K L  L RG   CFPV   VV+K+Y YLRTLKKPD++SA AKL QL   PTG EI FI+ FA LVI+  +  SL++
Subject    936  DLIVPTQRSFAPFEAITSKGLNNLVRGKVECFPVCASVVSKLYRYLRTLKKPDEQSAMAKLSQLQANPTGEEIHFIQGFAKLVINTNKIDSLIN  1217

Range 3: 551 to 820 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 43/90(48%) 0/90(0%) Plus/Minus
Query      403  NGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLS  672
                NGC   S   PSG K+      LY * Q FKL       SGG T V  S+ G +TS+KV+RSR  Q** SS + RFLA + I  GTN L+
Subject    551  NGCS*PSEWTPSG*KNNLSLSTLYV*HQEFKLFFAPFSNSGG*TKVPNSLSGFSTSKKVIRSRWVQ**SSSCKNRFLALLIINSGTNSLN  820

Range 4: 938 to 1186 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 38/83(46%) 0/83(0%) Plus/Minus
Query       34  MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMASKPEKHRMLETRR  282
                +T+ AK  M  IS PVG + S  N A AD  SGFL V K  Y L TT   TGK   +P  +  K L+ MASK  K R + T R
Subject    938  ITNLAKPWMKCISSPVGFA*SWLNLAIADCSSGFLSVRKYLYNLDTTLAHTGKHSTLPLTKLFKPLLVMASKGAKLRCVGTIR  1186

Range 5: 558 to 842 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 29/95(31%) 0/95(0%) Plus/Minus
Query      381  FKQIPT*QWL*IHFTPVTIRSKEHLALRNSILVSPRV*AFRRVNKDFRGYYSCCKKHVGPNHFQEGDEITYRPVMNFIMEKKIPCTCRDNTRDQF  665
                F+++   QWL + F    I  K+     +SI V+PRV  F R    FR      ++ V   + QEG++I   P+M  I+++ I        R QF
Subject    558  FEEVTATQWLLVAFRMDAIWIKKQFVFVHSICVAPRVQTFLRTL*QFRWVN*GAQQFVWLQYLQEGNQIPMGPIMKLIVQE*ILSAFNHQLRHQF  842

Nerine latent virus isolate Marijiniup 4, complete genome

Sequence ID: Length: 8334 Number of Matches: 4

Range 1: 579 to 947 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.1 bits(354) 0.0 66/123(54%) 0/123(0%) Minus/Plus
Query      294  LVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT  662
                + PR     +R LF HDEIHYWS +DLI  LE  RP  +LAT V PPEIL  S ESLN W Y+Y+I  G++ + PDG   E Y+QPL S +LLK + + L DG  Y VD++HSKF HHL+S T
Subject    579  MFPRNFQGKSRKLFFHDEIHYWSRKDLIYMLEQFRPECILATLVCPPEILAGSKESLNKWCYEYKIDGGKLHYYPDGVHSEGYTQPLDSSFLLKTKKIQLDDGETYCVDLIHSKFSHHLISIT  947

Range 2: 960 to 1232 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
110.1 bits(234) 0.0 47/91(52%) 0/91(0%) Minus/Plus
Query        6  LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL  278
                +  ++R F  FDA+    L+PL R +   FP+  +V++KIY YLRTL+KPD +SA AKL QL+  PTG EIKFIE+FA LVI  G+  S+L
Subject    960  ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGKMRSIL  1232

Range 3: 1046 to 1231 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 33/62(53%) 0/62(0%) Plus/Minus
Query        7  SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK  192
                S E +LP  +T  A SSMNLIS PVG + S* N A AD  SGF RVL+   IL+ T    GK
Subject   1046  SIERILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGK  1231

Range 4: 611 to 934 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 43/108(40%) 0/108(0%) Plus/Minus
Query      307  K**QNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRF  630
                K* +N E   ST *  PS       LS+  L  G    S   PSG    +P  ILY *   FK S +  +ISGG T VA    G   S   ++S +DQ* ISS +K F
Subject    611  K*WENLECMRSTQ*VSPSSN*IFFVLSRKELSKGWV*PSE*TPSG**CSFPPSILYS*HHLFKDSLDPAKISGGQTRVASIHSGRNCSSI*IKSFLDQ*CISS*KKSF  934

Nucleotide Sequence (349 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
349

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
270.5 1090.1 36% 4.386e-72 59% NC_001948
103.7 202.1 46% 8.441e-27 39% NC_028975
100.0 181.0 46% 3.626e-25 42% NC_028868
104.6 197.0 46% 1.58e-26 36% NC_025388
84.9 190.6 48% 8.449e-27 42% NC_009892

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 6

Range 1: 8011 to 8358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
270.5 bits(584) 0.0 111/116(96%) 0/116(0%) Plus/Plus
Query        1  GCIDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA  348
                G IDELIRAFGESGI+ES QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTT+RRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA
Subject   8011  GAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA  8358

Range 2: 8016 to 8357 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.5 bits(477) 0.0 99/114(87%) 0/114(0%) Minus/Minus
Query        6  ALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMPDSPNARINSSM  347
                ALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPAISDLFRSQ GL PI+VDL ELPTSEQ RAIS+AT N +LS MPDSPNARI+SS+
Subject   8016  ALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSI  8357

Range 3: 8020 to 8358 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
173.8 bits(373) 0.0 73/113(65%) 0/113(0%) Minus/Minus
Query       10  RALICDSKEEVKGCKLFILIKSLLGPISGWNPRLQMDIPHDFRIVHAKSAHGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLI  348
                R LICDS+E++KGCKLFILIKS LGP+S W PRLQMD+PHDF IVHAKS    H PY  S F  + VT+ TL+NQG* L ATNIRA+ C IY ++KL A  YAR T+C+NQL+
Subject   8020  RTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLV  8358

Range 4: 8016 to 8354 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 70/113(62%) 0/113(0%) Plus/Plus
Query        6  HR*VDSSIR*VWHIRERSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYHAQILHVLCENRVEYPSGDGDSTR*LGQEGI**E*KVCSL*LLPWSHR*E  344
                +R  DS I *+WH  +R++*   RY T LL*CW*L ++N DW+ES+L*P+ + N W+ KG D+   ILHVLC+NRVE+PSGDGD+T *LGQE I**E*KVCSL*    SHR*E
Subject   8016  NRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*E  8354

Range 5: 8024 to 8359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.5 bits(296) 0.0 71/112(63%) 0/112(0%) Plus/Plus
Query       14  S*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMRKSCGISIWRRGFHPLIGPRRDLMRMKSLQPLTSSLESQMRAR  349
                S*F H V+LA  +A +L   *I H  ALMLVA + QP*L RV  VT*   K L  *G+*    DFACTM+KSCG SIWRRG+H L GPR+DLMRMKSLQPL  S ESQMR R
Subject   8024  S*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVR  8359

Range 6: 8027 to 8359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.4 bits(287) 0.0 66/111(59%) 0/111(0%) Minus/Minus
Query       17  ARSHL*LQGRSQRLQTFHSH*IPSWPN*RVESPSPDGYSTRFSHSTCKICAW*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRSLICQTHRMLES  349
                A SHL*L  ++QRLQTFHSH*I SWP+* V SPSPDG STRF HSTCKI    S PL  Q F    GH+ DS QS L   SYQHQS+ V YL      R  +CQ H+M ES
Subject   8027  AHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES  8359

Asian prunus virus 3 isolate Nanjing, complete genome

Sequence ID: Length: 9654 Number of Matches: 3

Range 1: 8222 to 8419 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 39/66(59%) 0/66(0%) Plus/Plus
Query      151  LNRSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA  348
                + R EIA +I++ TT+RRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +A
Subject   8222  VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAA  8419

Range 2: 8105 to 8212 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 14/36(39%) 0/36(0%) Plus/Plus
Query       37  SGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPF  144
                +G+ + D      DIAR+C+D GSS+ +  IG S +
Subject   8105  AGVPKKDLTFAMWDIARYCADAGSSESTEFIGTSSY  8212

Range 3: 8227 to 8403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 34/59(58%) 0/59(0%) Minus/Minus
Query      156  TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDL  332
                T  KKSKAANF FSL P      GGI V+  +FHTI A*  QNLR VV  L+  AIS L
Subject   8227  TCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLMTAAISIL  8403

Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome

Sequence ID: Length: 9362 Number of Matches: 3

Range 1: 8162 to 8359 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
100.0 bits(212) 0.0 37/66(56%) 0/66(0%) Plus/Plus
Query      151  LNRSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA  348
                + R EIA +I++ TT+RR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF  V++ +A
Subject   8162  VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAA  8359

Range 2: 8045 to 8152 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 15/36(42%) 0/36(0%) Plus/Plus
Query       37  SGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPF  144
                +G+ ES       DIAR+C+D GSS  +  IG S +
Subject   8045  AGVPESTLTFSMWDIARYCADAGSSASTEFIGTSSY  8152

Range 3: 8167 to 8343 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 29/59(49%) 0/59(0%) Minus/Minus
Query      156  TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDL  332
                T  KKS A NF F L PF     GG+ V   +F TIFA*  Q    VV  LI  AIS L
Subject   8167  TCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLITEAISIL  8343

Asian prunus virus 1 isolate tatao5, complete genome

Sequence ID: Length: 9409 Number of Matches: 3

Range 1: 8207 to 8398 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
104.6 bits(222) 0.0 40/64(62%) 0/64(0%) Plus/Plus
Query      157  RSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA  348
                R EIA +I++ TT+RRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +A
Subject   8207  RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAA  8398

Range 2: 8084 to 8191 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.1 bits(68) 0.0 13/36(36%) 0/36(0%) Plus/Plus
Query       37  SGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPF  144
                +G+   D      DIAR+C+D GSS+ +  +G S +
Subject   8084  AGVPTKDITFAMWDIARYCADAGSSESTEFVGTSSY  8191

Range 3: 8206 to 8382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.3 bits(121) 0.0 33/59(56%) 0/59(0%) Minus/Minus
Query      156  TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDL  332
                T  KKSKAANF FSL PF     GG+ V+  +F TI A*  QNL  VV  LI  AIS L
Subject   8206  TCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLITAAISIL  8382

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 3

Range 1: 8549 to 8704 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.9 bits(179) 0.0 30/52(58%) 0/52(0%) Plus/Plus
Query      193  TMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA  348
                T+R+FC YYAK+VWN+ LET  PPA W+ KG+ +  K+AAFDFF GV   +A
Subject   8549  TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAA  8704

Range 2: 8357 to 8533 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 25/59(42%) 0/59(0%) Plus/Plus
Query        7  IDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR  183
                I ++   F + G+S      V + IARHC+DVGSS +S LIG  P  D+   E+A II+
Subject   8357  ISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK  8533

Range 3: 8518 to 8688 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 27/57(47%) 0/57(0%) Minus/Minus
Query      162  TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAIS  332
                TP KKSKAA    SL P L Q+AGG+ VS   F TI A*  QN R V  ++++  ++
Subject   8518  TP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLLMIVA  8688

Nucleotide Sequence (1353 letters)

Query ID:ds2016-132_1
Query definition:No definition line
Query length:1368
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 17 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
136
272
408
544
680
816
952
1088
1224
1353

Descriptions

Alignments

Rupestris stem pitting associated virus-1, complete genome

Sequence ID: Length: 8744 Number of Matches: 12

Range 1: 3311 to 4660 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1008.7 bits(2195) 0.0 415/450(92%) 0/450(0%) Minus/Plus
Query        3  VGFLLSTDGLALKAGIRSFVESESPVDPALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI  1352
                VGFLLSTDGLALKAGIRSFVESE  V P LS+P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIG+GPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYAI
Subject   3311  VGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAI  4660

Range 2: 3310 to 4662 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
714.5 bits(1553) 0.0 351/451(78%) 0/451(0%) Plus/Minus
Query        1  KMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVRPPNKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVIMISLTWCLTQNKXXXXXXXXXXXPSCFRMVGLERAGSTGDSLSTNDLIPAFKAKPSVLRRKPT  1353
                K+A*SAKAAV+EPFLK  G+L+SNIGFTNL LS LYLY  PSS+L++SLCSAPKIA SF ESYVL* GSPA EMKASLRI  +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA  TL  SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPVRPP+KHP +FSA SKLGK VI DPF E +SRADRLTFR+SSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP  SHLAQMSKASKASAKYI+ RPPP* SSSK+*LVLGLH+* +TSTSRLPSA+AMAVIMQP  GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LTWC  QN AIISFSA*AFS +C  + G ER+G T  SLST D IPAF+A PSVL +KPT
Subject   3310  KIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPT  4662

Range 3: 3311 to 4255 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
309.9 bits(670) 0.0 147/315(47%) 0/315(0%) Plus/Minus
Query      408  IHF*VPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSSKCTKHNCQFSLLDVRS*HSSKPRL*IVKFLITYHASQTSQQAPLKFFRPFKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPATNLLDMPNVFIRYVKQSRYAPAWINNLNLAIDITFGADVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVHLTPSKC*CNGCNHATIKRGTRLKMI*L*TQNST*RPLIFPKLPAHLIFRCYNDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTVGAEKKAN  1352
                IHF + FD*IC*S    +K Y+F+ R  HE LV ETL S KCTKH+ QF  L++ S ++ KPR  I + LITY+AS    Q  L+ F P K W++ Y  P+  K+++  S +  Q IH Y LR  T  L+MP V I YVKQ R     IN+ NL+I ITF A+V+ LKSF  IHH++ P LT L K++I A  T +I H++ TPSKC* NGC+HATI+ G  L++I*   +NST* PL FP+ P + IF C + + ++VPNAE* +H I  ISI  +L    W  K W     T HER  + L  +++ A+ K N
Subject   3311  IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTN  4255

Range 4: 4301 to 4654 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 64/118(54%) 0/118(0%) Plus/Minus
Query        9  VISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LSFKQPQYIALFSTQNSSIFLRIICALTRVTSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPEEDFKGNDIP  362
                +IS+SGSH ALFEVT  S* +H ++KPPA  V+PI  + KQ +Y+ L S QN  I LR+ICALT +TSK +ES+T  NK+ *IDV+RR+ L+ IK+H + SL +CNF +E+ K   IP
Subject   4301  IISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP  4654

Range 5: 3346 to 4239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
250.3 bits(540) 0.0 136/298(46%) 0/298(0%) Minus/Plus
Query      424  EGRNKVVRGK*ITS*SSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHYNTGI*GELEVWGK*VASMWNFVFKVKSFSTLCPS*WLHDYSHCISTWKA*GGRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLRQM*CQWRD*GY*SRRAHICSV*HNE*TH*ACREDW*RASKYKGG*AAKS*TISS*PAFSERVKDNIFSKF*KGGKTSGVLVGRSDWRDK**EI*RFKALACWSVNF*HQAKRIDSCAWYIWSWKEFPIQELHEEI*RKICNICLT*AGSSKFNQK  1317
                +GR  + RG+*    S SF P++      +CLCR+*+D +IL  AP +    +T I*  LE+ G+*VA MWN +  +KS  T+ P+ WLHD+SHC STWKA*    +L +* +H S+ * A+S  G  +DVF  SF*G  HLR M* +WRD*  *S   + C V*HN * H AC E+ *  S++K G* A+   I     F+E V +N+  K * G K + +     +WR K**E+   K LA W + +*+ AK ID  AWYIW W+EF +QE HE++*  I N+C +    SKFNQK
Subject   3346  KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK  4239

Range 6: 4306 to 4653 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.3 bits(217) 0.0 54/116(47%) 0/116(0%) Minus/Plus
Query       10  CRYL*SLPQESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*PLSKHI*FSKR*SYFGC*TERYIEVA*RKVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*L  357
                C   *  P +S R +GW L D **   + SW+HRSM + Y+ * FH +CW* +SKHI* +K    FG * E +   A* + +*V   + EVC+ +V  K  + LQKGL DCRF *L
Subject   4306  CSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*L  4653

Range 7: 3504 to 4256 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
204.5 bits(440) 0.0 120/251(48%) 0/251(0%) Plus/Minus
Query      407  HPFLGPF*LNLLEPA*VRQMLQIFLQIXXXXXCIGNSFQLQMYQAQLSILFA*CQKLTLQQAKALNR*ISHHLSRQSDLPTSTPEVFPPFQNLENMLSLTRSEKAGQELIV*LFAAHPPLYFEARYQSSRHA*CVHSLCQTEQICARLD**PQSRH*HHIWRRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARPPHAFQVLMQWL*SCNH*EGHKVENDLTLNTKFHIEATHFPQTSSSPHIPV  1159
                HPF   F*LNLL+    +Q L+I+ Q  S*+SC  NS Q QMYQA+ SI  A* Q    Q+AK L+ * SHHL RQ     +    F P Q+L + L  T S K  +  I *  A HP L  E  Y  S+HA C H LCQT Q     D*  QS H +HI R+C++PQKL  NTS   P  D A Q+ D C  Y  N     HAFQVL QWL*SCNH  G  V +DL    +FHI ATH P+ S+  HI V
Subject   3504  HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV  4256

Range 8: 4350 to 4652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 48/101(48%) 0/101(0%) Plus/Minus
Query       11  NQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTFLQATSIYRSVQHPK*LYLFENHMCFDKGHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP  313
                NQ+KRQS SPF*S   +L +T   QTS     TY    QA  +  S Q PK    F +HMCFD  HQQ +*K H  *   IDRC QE     HQ+S + QP
Subject   4350  NQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP  4652

Range 9: 3312 to 3482 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.8 bits(74) 0.0 21/57(37%) 0/57(0%) Plus/Minus
Query     1181  GA*RRIRQSFHFLHKHFHQVASVWLGSKELDQLVIHFPRTTLFLPSKPNRRC*EESQ  1351
                GA  RI +S H  HKH   +    LG K+LD    H PR   + P     +C* ++Q
Subject   3312  GAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQ  3482

Range 10: 3504 to 4190 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
192.1 bits(413) 0.0 111/229(48%) 0/229(0%) Minus/Plus
Query      473  HRNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMVA*LQPLHQHLEGVRWTCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSAPNVMSMARLRLLIQAGAYLLCLT*RMNTLGMSRRLVAGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLKGRKNFRGACWEV*LA**VMRNLTIQSLGLLECQLLTSSKEN*QLCLVHLELERVSYTRAS*RDLKEN  1159
                H+NM+  G+ GK+SG YVEF   +QI  N  P  MVA* QPL QHLEGV+  C I  V  A I  L+S+V+ G   *CI  KLLR  T A NV+ M RL+ LI+   +L CLT* M+T GM R+ V  L+ *+WM+C + +D     F * G +*   Q L G K+ +  C   *LA *VMR+  +Q+LG L   LL  S+ N*  CLVHL L RVS TR S*+ L+ N
Subject   3504  HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN  4190

Range 11: 4467 to 4652 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.8 bits(159) 0.0 36/62(58%) 0/62(0%) Minus/Plus
Query       11  KAHMILKKIELFWVLNRAIY*GCLKESHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLI  196
                KAHM  K+I  FW L+R  Y  CL+   IG T +AGGL* +C  QD  VTSKRA *LPL LI
Subject   4467  KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLI  4652

Range 12: 4224 to 4412 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.0 bits(81) 0.0 31/63(49%) 0/63(0%) Minus/Plus
Query      251  QIQSKGT*KWMKSVXXXXXXXXXXRAGMSLPLKSSSGKLQA*RLVIA*SLMKFSYSLLVTSIY  439
                QIQSK   KWM + +  ++  QRR+ GM   L+ S  KLQ *RL   * LM+ S  LL TSIY
Subject   4224  QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY  4412

Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1

Sequence ID: Length: 9266 Number of Matches: 6

Range 1: 3460 to 4299 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 117/280(42%) 0/280(0%) Minus/Plus
Query      417  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  1256
                P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L      G TGV+        K   A +    +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   3460  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4299

Range 2: 4360 to 4713 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 59/118(50%) 0/118(0%) Minus/Plus
Query        3  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI  356
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L +     I +AGDPCQS YDS  DR I    +SDI+R L G+SY++N+ S+RF NP+F  RLPCN  K  +T    +Y +
Subject   4360  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTL  4713

Range 3: 3567 to 3917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.2 bits(112) 0.0 40/117(34%) 0/117(0%) Plus/Minus
Query      799  CLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS  1149
                C  CSF   N A + P  L    SP  S L Q+   S +  +  I +P P  +SSK     GL     TSTS   SA+A+A++  PL G QG K   ++  +     S   N Q+ S
Subject   3567  CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS  3917

Range 4: 4164 to 4265 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 18/34(53%) 0/34(0%) Plus/Minus
Query      451  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVN  552
                LG+T V  FP D  M  L R+LFP PNVP   +N
Subject   4164  LGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN  4265

Range 5: 4503 to 4703 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 28/67(42%) 0/67(0%) Plus/Minus
Query       13  SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPA  213
                S+ + V     KLQG+L   IGF NL L  L L   P   L +SL    KI  S   S  L  GSPA
Subject   4503  SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA  4703

Range 6: 4404 to 4463 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 15/20(75%) 0/20(0%) Plus/Minus
Query      253  RSM*PGGNS*TSSKITQ*PA  312
                RSM*PGGNS* SS  T *P+
Subject   4404  RSM*PGGNS*ISSMTTV*PS  4463

Peach chlorotic mottle virus, complete genome

Sequence ID: Length: 9005 Number of Matches: 10

Range 1: 3326 to 4030 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.3 bits(420) 0.0 84/235(36%) 0/235(0%) Minus/Plus
Query      540  KQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVV  1244
                +Q+  + +AE E +A FC  + ++L +++    V+W F   +      L  + NHF PC P+NGC++ AIASALGRRE+DVL  L +P    ++E+ C G G  +  L   FE F I A+ D  G +  +N  G+ISA F +  EH+ H++++     S  + +L  V +SAL LL +NGS+I+Y PS +RA+ L   L  G TGV+  E +N  +  + G+  +  +++  T++
Subject   3326  RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII  4030

Range 2: 4208 to 4561 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.0 bits(332) 0.0 62/118(53%) 0/118(0%) Minus/Plus
Query        3  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI  356
                V+TFE+FL  +  +K GH VI DE+QLFPPGY+DL L+   SD  + LAGDPCQS YDS+ DR +     SDI+ +L GKSYRYN+ S+RF NP+F SRLPC+     +T    +Y +
Subject   4208  VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTL  4561

Range 3: 4030 to 4107 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 13/26(50%) 0/26(0%) Minus/Plus
Query      460  WYIWSWKEFPIQELHEEI*RKICNIC  537
                WY+W W E  I E+H +I RK  N C
Subject   4030  WYLWMW*EHSI*EVHIKITRKSYNFC  4107

Range 4: 3995 to 4198 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 32/68(47%) 0/68(0%) Minus/Plus
Query      369  SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKK  572
                ++I +R+L  ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ +    K +  GK  K
Subject   3995  ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK  4198

Range 5: 4267 to 4371 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 17/35(49%) 0/35(0%) Minus/Plus
Query      193  DL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*PLSK  297
                D ** SA+PSWL  S S  +  *    SCW  L K
Subject   4267  DH**DSALPSWLS*SHSGLH*L*HQPCSCWRSLPK  4371

Range 6: 4214 to 4495 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 29/94(31%) 0/94(0%) Plus/Minus
Query       69  KHRIYKPPALQVVPI*LSFKQPQYIALFSTQNSSIFLRIICALTRVTSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPEEDFKG  350
                K RI KP    +VP+ L+ +    + +   +  +I L I+  L  ++SK    V A+  +  I +TRRE LN I DH +  L      ++  KG
Subject   4214  KDRIPKPLTQYIVPVALTIQNVDDVRIRIGKKVTIILAIVVTLAGISSKNKVDVRASADQNEIKITRREELNLINDHRVPLLNGSYSHKKQLKG  4495

Range 7: 3466 to 3633 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 24/56(43%) 0/56(0%) Plus/Minus
Query      937  RPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKI  1104
                +P P  +SS   L  GL K   TS S LP ADA+A+  QPL G  G K*  +  ++
Subject   3466  KPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV  3633

Range 8: 4030 to 4128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.1 bits(79) 0.0 18/33(55%) 0/33(0%) Plus/Minus
Query      439  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVP  537
                AR  LGET V  FP D  M  L R L P P VP
Subject   4030  ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP  4128

Range 9: 4207 to 4365 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.9 bits(96) 0.0 26/53(49%) 0/53(0%) Plus/Minus
Query      199  QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  357
                QGSPAR    S  +  R RS *PGG S* SS IT  P       +R +SKV+T
Subject   4207  QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST  4365

Range 10: 3485 to 3571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 13/29(45%) 0/29(0%) Plus/Minus
Query      999  EHVHLTPSKC*CNGCNHATIKRGTRLKMI  1085
                ++++L+P+  *CN  NH TI R    KMI
Subject   3485  KNIYLSPA*G*CNCPNHTTINR*AWHKMI  3571

Apricot latent virus, complete genome

Sequence ID: Length: 9311 Number of Matches: 7

Range 1: 3463 to 4095 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
200.4 bits(431) 0.0 86/211(41%) 0/211(0%) Minus/Plus
Query      624  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  1256
                P + KQL  N +AE E +A FC  + ++L ++    E +W F  +E      L  + NHF+PC P+NGC+I AIASAL RREVDVL  L +P+   +F+E+ +G G ++  L+  FE F IC   D  GE+ ++N GGRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG++I Y PS +RA  L   L  G TGV+
Subject   3463  PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL  4095

Range 2: 4363 to 4716 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
153.2 bits(328) 0.0 58/118(49%) 0/118(0%) Minus/Plus
Query        3  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI  356
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YDS  DR I    +SDI+R+L G++Y++N+ S+RF NP+F  RLPCN  K  +T    +Y +
Subject   4363  VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTL  4716

Range 3: 4153 to 4302 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      417  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  566
                +  R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4153  VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL  4302

Range 4: 3570 to 3911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 43/114(38%) 0/114(0%) Plus/Minus
Query      808  CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS  1149
                CSF   N A + PP L    SP  S L Q+ K SK+  +  I +P P  +SS      GL +   TSTS    A+AMA++ QP  G QG K*   + K+     S   N Q+ S
Subject   3570  CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS  3911

Range 5: 4161 to 4280 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 20/40(50%) 0/40(0%) Plus/Minus
Query      439  ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  558
                AR  LGET V  FP D  M  L R+L P P VP    N L
Subject   4161  ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL  4280

Range 6: 4506 to 4706 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 28/67(42%) 0/67(0%) Plus/Minus
Query       13  SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPA  213
                S+ + V     KL G+L +  GF N  L  L L   P + L +SL    KI LS   S  L*QGSPA
Subject   4506  SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA  4706

Range 7: 4362 to 4466 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.4 bits(47) 0.0 15/35(43%) 0/35(0%) Plus/Minus
Query      253  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  357
                +S+ PGG S* SS  T  P+        K+SKV T
Subject   4362  KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT  4466

Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds

Sequence ID: Length: 9332 Number of Matches: 9

Range 1: 3459 to 4091 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
195.8 bits(421) 0.0 84/211(40%) 0/211(0%) Minus/Plus
Query      624  PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI  1256
                P + KQL  N +AE E +A FC  + +RL ++    E +W F  +E      L  + NHF+PC P+NGC+I AI+SAL RREVDVL  L +P+   +FEE+ +G G ++  L   FE F IC   D  GE+ ++N  GRI A F +  EH+ H+  +     S  V +L +V  SA+  L++NG+++ Y PS +RA  L      G TGV+
Subject   3459  PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL  4091

Range 2: 4359 to 4712 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
151.4 bits(324) 0.0 58/118(49%) 0/118(0%) Minus/Plus
Query        3  VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI  356
                V TFE+F+  +  +K GH V+ DE+QLFPPGYIDL +L ++ +  I +AGDPCQS YD   DR I    +SDI+R+L G+SY++N+ S+RF NP+F  RLPCN  K  +T    +Y +
Subject   4359  VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTL  4712

Range 3: 4149 to 4298 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      417  IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL  566
                + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI  DL
Subject   4149  VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL  4298

Range 4: 4502 to 4702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 32/67(48%) 0/67(0%) Plus/Minus
Query       13  SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPA  213
                S+ + V    L+LQGNL  N GF NL L  L L   P   L ISL    K+ LS  +S  L*QGSPA
Subject   4502  SSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA  4702

Range 5: 3632 to 3907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 35/92(38%) 0/92(0%) Plus/Minus
Query      808  CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*  1083
                CSF   N A + P  L    SP  S L Q+ K S    +  + +P P  +SSK     GL     TSTS   SA+ +A+I  P  G QG K*
Subject   3632  CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK*  3907

Range 6: 4157 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
44.1 bits(90) 0.0 18/36(50%) 0/36(0%) Plus/Minus
Query      451  LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL  558
                LGET V  FP D  M  L ++LFP PNVP   ++ L
Subject   4157  LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL  4264

Range 7: 4358 to 4462 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 16/35(46%) 0/35(0%) Plus/Minus
Query      253  RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT  357
                +S+*PGG S* SS  T *P+          SKV T
Subject   4358  KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT  4462

Range 8: 4149 to 4268 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 21/40(52%) 0/40(0%) Plus/Minus
Query      447  PPR*DKCYKFSFRSLHEALV*ETLSSSKCTKHNCQFSLLD  566
                PP *DK Y FS   L+E L * TLS+S+ +K++ QF L+D
Subject   4149  PPW*DKSYGFSRGLLNELLE*GTLSASERSKNHYQFPLMD  4268

Range 9: 4359 to 4574 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 23/72(32%) 0/72(0%) Plus/Minus
Query      141  IALFSTQNSSIFLRIICALTRVTSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPEEDFKGND  356
                I   ++++  I   +I  LTRVTS  +  +    K   I +  R+ LNFI  +++T L A    +E FK  D
Subject   4359  ITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD  4574