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Queries

Nucleotide Sequence (464 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
464

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
257.7 257.7 28% 3.142e-75 92% ALP32116

Alignments

replicase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|ALP32116.1| Length: 2161 Number of Matches: 1

Range 1: 757 to 887 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
257.7 bits(657) 0.0 121/131(92%) 0/131(0%) Plus/Plus
Query       72  GGSHKSLGWPKFMDEILSSAGGRSYYNSCLVQRYEENSKLALHKDDESCYETGHKVLTINLVGSATFTISKARNLVEGNYCSQVIRPGEFFEMPGGMQNNYFHGVSNCGNGRVSMTFRRQKLEDEDQVFRS  464
                GGSHKSLGWPKFMDEILSS GGRSYYNSCLVQRYE+NSKLALHKDDE CYE GHKVLTINLVGSATFTISKARNLVEGNYC+ VIRPGEFFEMP GMQNNYFHGVSNC +GRVSMTFRRQKLEDEDQVF S
Subject    757  GGSHKSLGWPKFMDEILSSTGGRSYYNSCLVQRYEKNSKLALHKDDEDCYEIGHKVLTINLVGSATFTISKARNLVEGNYCNLVIRPGEFFEMPRGMQNNYFHGVSNCEDGRVSMTFRRQKLEDEDQVFIS  887

Nucleotide Sequence (337 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
337

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
221.9 221.9 33% 1.472e-63 95% ALB35654

Alignments

replication-associated polyprotein [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|ALB35654.1| Length: 2161 Number of Matches: 1

Range 1: 1089 to 1199 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
221.9 bits(564) 0.0 105/111(95%) 0/111(0%) Minus/Plus
Query        3  STDGLALKAGIRSFVESESLENPSMSAQTVLRQLSKNAYAENEMIALFCIRHHVRLMIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPWAPLNGCMITAIASALGRREVD  335
                STDGLALKAGIRSFVESESL +PS+SAQTVLRQLS NAYAENEMIALFCIRHHVRL+IITPEYEVSWKFGDSEWPLCGILCLQSNHFQP APLNGCMITAIASALGRREVD
Subject   1089  STDGLALKAGIRSFVESESLVDPSLSAQTVLRQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVD  1199

Nucleotide Sequence (469 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
469

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
313.5 313.5 33% 7.677e-95 97% ALP32116

Alignments

replicase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|ALP32116.1| Length: 2161 Number of Matches: 1

Range 1: 1321 to 1475 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
313.5 bits(802) 0.0 151/155(97%) 0/155(0%) Minus/Plus
Query        1  GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKREGWDVVTFEEFLRKIENLKAGHCVIFDEVQLFPPGYVDVCLLTIRSDAFISLAGDPCQSTYDTQ  465
                GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDD CKVAKAGKSKREGWDVVTFE FLRKIENLKAGHCVIFDEVQLFPPGYVD+CLLTIRSDAFISLAGDPCQSTYD+Q
Subject   1321  GLTGVISDEKFNDSKPWLSGISTSNIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDGCKVAKAGKSKREGWDVVTFEVFLRKIENLKAGHCVIFDEVQLFPPGYVDLCLLTIRSDAFISLAGDPCQSTYDSQ  1475

Nucleotide Sequence (363 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
363

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
218.0 218.0 31% 1.576e-68 95% ABL10064

Alignments

triple gene block protein 1 [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|ABL10064.1| Length: 221 Number of Matches: 1

Range 1: 4 to 114 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
218.0 bits(554) 0.0 106/111(95%) 0/111(0%) Plus/Plus
Query       29  IVKALSAFEFVGVFCVLKSPVVVHRVPGSGKSSLIRELISEDEAFIAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSISDTSGFDVLFSDPYQNVSIPREAHFI  361
                +VKALSAFEFVGVFCVLK PVVVH VPGSGKSSLIRELISEDEAF+AFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLS+SDTSGFDVLFSDPYQNVSIPREAHFI
Subject      4  LVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFI  114

Nucleotide Sequence (332 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
332

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
137.5 137.5 19% 3.221e-37 100% ANN29786

Alignments

triple gene block protein-1 [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|ANN29786.1| Length: 221 Number of Matches: 1

Range 1: 158 to 221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.5 bits(345) 0.0 64/64(100%) 0/64(0%) Minus/Plus
Query      141  LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ  332
                LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ
Subject    158  LICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ  221

Nucleotide Sequence (628 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
63
126
189
252
315
378
441
504
567
628

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
427.6 427.6 33% 3.873e-134 100% AQN80517

Alignments

replicase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AQN80517.1| Length: 2161 Number of Matches: 1

Range 1: 1326 to 1534 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
427.6 bits(1098) 0.0 208/209(100%) 0/209(0%) Plus/Plus
Query        1  ISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAPF  627
                ISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYA F
Subject   1326  ISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAIF  1534

Nucleotide Sequence (391 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
40
80
120
160
200
240
280
320
360
391

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
255.4 255.4 32% 1.602e-82 96% CDU84818

Alignments

coat protein [Grapevine rupestris stem pitting-associated virus]

Sequence ID: emb|CDU84818.1| Length: 259 Number of Matches: 1

See 1 more title(s)

Range 1: 43 to 169 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
255.4 bits(651) 0.0 122/127(96%) 0/127(0%) Plus/Plus
Query        9  GVFGEREGVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  389
                GV  +R+ VIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA
Subject     43  GVLAKRKRVIENALSKTVDMREVLKHESVVLSPNVMDEGAIDELIRAFGESGIPESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPA  169

Nucleotide Sequence (459 letters)

Query ID:ds2016-57_54
Query definition:No definition line
Query length:328
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 8 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
46
92
138
184
230
276
322
368
414
459

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
150.2 150.2 16% 4.294e-41 99% BAF34849

Alignments

RNA-dependent RNA polymerase, partial [Grapevine rupestris stem pitting-associated virus]

Sequence ID: dbj|BAF34849.1| Length: 266 Number of Matches: 1

Range 1: 194 to 266 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.2 bits(378) 0.0 72/73(99%) 0/73(0%) Minus/Plus
Query      240  IYERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID  458
                I+ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID
Subject    194  IWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID  266