Queries
Nucleotide Sequence (381 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
303.5 | 1700.2 | 43% | 8.112e-81 | 99% | DQ286725.2 | |
272.8 | 951.7 | 33% | 1.435e-71 | 51% | NC_004724.1 | |
272.8 | 941.1 | 33% | 1.435e-71 | 50% | JX513891.1 | |
272.8 | 951.7 | 33% | 1.435e-71 | 51% | AF314061.1 | |
267.7 | 783.7 | 43% | 4.656e-70 | 39% | AY881628.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 8
Range 1: 13239 to 13616 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.5 bits(656) | 0.0 | 125/126(99%) | 0/126(0%) | Plus/Plus |
Query 2 ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 ILRFVESYTADPAIDALEE+LDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP Subject 13239 ILRFVESYTADPAIDALEEKLDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 13616
Range 2: 13239 to 13616 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
296.6 bits(641) | 0.0 | 126/126(100%) | 0/126(0%) | Minus/Minus |
Query 2 WYV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD 379 WYV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD Subject 13239 WYV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD 13616
Range 3: 13240 to 13617 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 125/126(99%) | 0/126(0%) | Minus/Minus |
Query 3 LVCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRISG 380 LVCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPI LLTHQ*LGQPCTIPRISG Subject 13240 LVCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPIFLLTHQ*LGQPCTIPRISG 13617
Range 4: 13238 to 13618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.3 bits(625) | 0.0 | 126/127(99%) | 0/127(0%) | Plus/Plus |
Query 1 HPEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK 381 HPEIRGIVHG*PSY*CVRR+IGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK Subject 13238 HPEIRGIVHG*PSY*CVRRKIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK 13618
Range 5: 13348 to 13617 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.7 bits(447) | 0.0 | 90/90(100%) | 0/90(0%) | Plus/Plus |
Query 111 CG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ 380 CG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ Subject 13348 CG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ 13617
Range 6: 13240 to 13311 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 24/24(100%) | 0/24(0%) | Plus/Plus |
Query 3 S*DSWNRTRLTQLLMR*KKNWML* 74 S*DSWNRTRLTQLLMR*KKNWML* Subject 13240 S*DSWNRTRLTQLLMR*KKNWML* 13311
Range 7: 13322 to 13618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.1 bits(498) | 0.0 | 99/99(100%) | 0/99(0%) | Minus/Minus |
Query 85 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 381 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL Subject 13322 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 13618
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 6
Range 1: 13226 to 13603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(589) | 0.0 | 112/126(89%) | 0/126(0%) | Plus/Plus |
Query 2 ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 +LRFVESYTADPAIDALEE+LDAIMK NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP SVGGFEINMKNVE FFDK+QRE+P+VSLRRQFNGARA+EAFKVFK GNISFKPISRLNIP Subject 13226 VLRFVESYTADPAIDALEEKLDAIMKKSNPHLSTAQLWVGFFCYYGEFRTAQRRVVQRPGVYKTPNSVGGFEINMKNVEEFFDKIQREVPNVSLRRQFNGARAHEAFKVFKKGNISFKPISRLNIP 13603
Range 2: 13309 to 13605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 77/99(78%) | 0/99(0%) | Minus/Minus |
Query 85 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 381 LGMFNR+MGLKL+FP LNTL AS ALAPLNCRR++T G SR LSKN STFF+ ISKPPT+ GVLYT GL TTR CAVRNSP**QK PTH+CAV+R*GL Subject 13309 LGMFNRDMGLKLMFPFLNTLNASCALAPLNCRRRDTFGTSRWILSKNSSTFFILISKPPTELGVLYTPGLCTTRRCAVRNSP**QKNPTHSCAVDR*GL 13605
Range 3: 13226 to 13600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 70/125(56%) | 0/125(0%) | Minus/Minus |
Query 2 YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD 376 YV* R GF+AD+ FKYFE L+ S +VEL P*R+ LSL LIKK F++ H+ +T++R+G I+ RP +H LC AKF V+ E++YPQLRRR MRI LHYS+QF F R+NS +S V F +SQD Subject 13226 YV*PRYGFEADVSLFKYFERLVRSGSVELSP*RHVWHLSLDLIKKLFDVFHINLETSDRIGRLIHTRPLHHPTLCGAKFAVIAEESYPQLRRR*MRITLLHYSVQFLFQRVNSRISSV*FDKSQD 13600
Range 4: 13228 to 13605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 65/126(52%) | 0/126(0%) | Plus/Plus |
Query 4 PEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK 381 PEI I+H * Y* V R IG YNE SSS+ GA VGR LLLR ISH TTS G++AG +*+ + G F + +E+ ++F** TR +R TA IQR S G QSI*+ ++QL TH+S+KHT+ Subject 13228 PEICRIIHC*SGY*RVGREIGRYNEEE*SSSIYGATVGRILLLLRRISHRTTSGGAKAGCV*DAQFGRRFRD*YEKRRRVF**DPTRGAKRVSTATIQRSQSARGVQSI*KGKHQLQTHISVKHTE 13605
Range 5: 13227 to 13601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 64/125(51%) | 0/125(0%) | Minus/Minus |
Query 3 VCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRISG 377 VCL E WV*S* *IL* P L R*I AV+ R LV +YQK + S +N +P Y PA P DVV+CEI R++R+ LPT AP DED +SL* PI L T Q* Q C I +ISG Subject 13227 VCLTEIWV*S*CFPF*IL*TPRALWLR*IVAVETRLAPLVGSYQKTLRRFSY*SRNLRPNWASYTHPAFAPPDVVRCEIRRNSRRILPTVAP*IDEDYSSSL*RPISLPTRQ*PDQQCMIRQISG 13601
Range 6: 13227 to 13604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 65/126(52%) | 0/126(0%) | Plus/Plus |
Query 3 S*DSWNRTRLTQLLMR*KKNWML*XXXXXXXXXXXXCG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ 380 S*D N T L +LL R K+NW L** ILI RR+CG* S T NFA HN+ W +GR I+ P R V + *+ K FLI NE + LYG NST E R SKYLK SA NP L *TY+ Subject 13227 S*DLSNHTLLIRLLTRWKRNWTL**RRVILIYLRRNCG*DSSAITANFAPHNVGWCKGRVCIRRPIRSEVSRLI*KTSKSFLIRSNERCQTCLYGDNSTEPERTRRSKYLKRETSASNPYLG*TYR 13604
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 6
Range 1: 13214 to 13591 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(589) | 0.0 | 112/126(89%) | 0/126(0%) | Plus/Plus |
Query 2 ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 +LRFVESYTADPAIDALEE+LDAIMK NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP SVGGFEINMKNVE FFDK+QRE+P+VSLRRQFNGARA+EAFKVFK GNISFKPISRLNIP Subject 13214 VLRFVESYTADPAIDALEEKLDAIMKKSNPHLSTAQLWVGFFCYYGEFRTAQRRVVQRPGVYKTPNSVGGFEINMKNVEEFFDKIQREVPNVSLRRQFNGARAHEAFKVFKKGNISFKPISRLNIP 13591
Range 2: 13297 to 13593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 77/99(78%) | 0/99(0%) | Minus/Minus |
Query 85 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 381 LGMFNR+MGLKL+FP LNTL AS ALAPLNCRR++T G SR LSKN STFF+ ISKPPT+ GVLYT GL TTR CAVRNSP**QK PTH+CAV+R*GL Subject 13297 LGMFNRDMGLKLMFPFLNTLNASCALAPLNCRRRDTFGTSRWILSKNSSTFFILISKPPTELGVLYTPGLCTTRRCAVRNSP**QKNPTHSCAVDR*GL 13593
Range 3: 13214 to 13588 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 69/125(55%) | 0/125(0%) | Minus/Minus |
Query 2 YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD 376 YV* R GF+AD+ FKYFE L+ S +VEL P R+ LSL LIKK F++ H+ +T++R+G I+ RP +H LC AKF V+ E++YPQLRRR MRI LHYS+QF F R+NS +S V F +SQD Subject 13214 YV*PRYGFEADVSLFKYFECLVRSGSVELSPQRHVWHLSLDLIKKLFDVFHINLETSDRIGRLIHTRPLHHPTLCGAKFAVIAEESYPQLRRR*MRITLLHYSVQFLFQRVNSRISSV*FDKSQD 13588
Range 4: 13216 to 13593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 64/126(51%) | 0/126(0%) | Plus/Plus |
Query 4 PEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK 381 PEI I+H * Y* V R IG YNE SSS+ GA VGR LLLR ISH TTS G++AG +*+ + G F + +E+ ++F** TR +R A IQR S G QSI*+ ++QL TH+S+KHT+ Subject 13216 PEICRIIHC*SGY*RVGREIGRYNEEE*SSSIYGATVGRILLLLRRISHRTTSGGAKAGCV*DAQFGRRFRD*YEKRRRVF**DPTRGAKRVSAATIQRSQSARGIQSI*KGKHQLQTHISVKHTE 13593
Range 5: 13215 to 13589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 63/125(50%) | 0/125(0%) | Minus/Minus |
Query 3 VCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRISG 377 VCL E WV*S* *IL* P L R*I A + R LV +YQK + S +N +P Y PA P DVV+CEI R++R+ LPT AP DED +SL* PI L T Q* Q C I +ISG Subject 13215 VCLTEIWV*S*CFPF*IL*MPRALWLR*IVAAETRLAPLVGSYQKTLRRFSY*SRNLRPNWASYTHPAFAPPDVVRCEIRRNSRRILPTVAP*IDEDYSSSL*RPISLPTRQ*PDQQCMIRQISG 13589
Range 6: 13215 to 13592 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 64/126(51%) | 0/126(0%) | Plus/Plus |
Query 3 S*DSWNRTRLTQLLMR*KKNWML*XXXXXXXXXXXXCG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ 380 S*D N T L +LL R K+NW L** ILI RR+CG* S T NFA HN+ W +GR I+ P R V + *+ K FLI NE + L G NST E R SKYLK SA NP L *TY+ Subject 13215 S*DLSNHTLLIRLLTRWKRNWTL**RRVILIYLRRNCG*DSSAITANFAPHNVGWCKGRVCIRRPIRSEVSRLI*KTSKSFLIRSNERCQTCLCGDNSTEPERTRHSKYLKRETSASNPYLG*TYR 13592
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 6
Range 1: 13226 to 13603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(589) | 0.0 | 112/126(89%) | 0/126(0%) | Plus/Plus |
Query 2 ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 +LRFVESYTADPAIDALEE+LDAIMK NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP SVGGFEINMKNVE FFDK+QRE+P+VSLRRQFNGARA+EAFKVFK GNISFKPISRLNIP Subject 13226 VLRFVESYTADPAIDALEEKLDAIMKKSNPHLSTAQLWVGFFCYYGEFRTAQRRVVQRPGVYKTPNSVGGFEINMKNVEEFFDKIQREVPNVSLRRQFNGARAHEAFKVFKKGNISFKPISRLNIP 13603
Range 2: 13309 to 13605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.6 bits(379) | 0.0 | 77/99(78%) | 0/99(0%) | Minus/Minus |
Query 85 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 381 LGMFNR+MGLKL+FP LNTL AS ALAPLNCRR++T G SR LSKN STFF+ ISKPPT+ GVLYT GL TTR CAVRNSP**QK PTH+CAV+R*GL Subject 13309 LGMFNRDMGLKLMFPFLNTLNASCALAPLNCRRRDTFGTSRWILSKNSSTFFILISKPPTELGVLYTPGLCTTRRCAVRNSP**QKNPTHSCAVDR*GL 13605
Range 3: 13226 to 13600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 70/125(56%) | 0/125(0%) | Minus/Minus |
Query 2 YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHESQD 376 YV* R GF+AD+ FKYFE L+ S +VEL P*R+ LSL LIKK F++ H+ +T++R+G I+ RP +H LC AKF V+ E++YPQLRRR MRI LHYS+QF F R+NS +S V F +SQD Subject 13226 YV*PRYGFEADVSLFKYFERLVRSGSVELSP*RHVWHLSLDLIKKLFDVFHINLETSDRIGRLIHTRPLHHPTLCGAKFAVIAEESYPQLRRR*MRITLLHYSVQFLFQRVNSRISSV*FDKSQD 13600
Range 4: 13228 to 13605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 65/126(52%) | 0/126(0%) | Plus/Plus |
Query 4 PEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIKHTK 381 PEI I+H * Y* V R IG YNE SSS+ GA VGR LLLR ISH TTS G++AG +*+ + G F + +E+ ++F** TR +R TA IQR S G QSI*+ ++QL TH+S+KHT+ Subject 13228 PEICRIIHC*SGY*RVGREIGRYNEEE*SSSIYGATVGRILLLLRRISHRTTSGGAKAGCV*DAQFGRRFRD*YEKRRRVF**DPTRGAKRVSTATIQRSQSARGVQSI*KGKHQLQTHISVKHTE 13605
Range 5: 13227 to 13601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 64/125(51%) | 0/125(0%) | Minus/Minus |
Query 3 VCLIERWV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFYIRPASEPHDVVQCEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRISG 377 VCL E WV*S* *IL* P L R*I AV+ R LV +YQK + S +N +P Y PA P DVV+CEI R++R+ LPT AP DED +SL* PI L T Q* Q C I +ISG Subject 13227 VCLTEIWV*S*CFPF*IL*TPRALWLR*IVAVETRLAPLVGSYQKTLRRFSY*SRNLRPNWASYTHPAFAPPDVVRCEIRRNSRRILPTVAP*IDEDYSSSL*RPISLPTRQ*PDQQCMIRQISG 13601
Range 6: 13227 to 13604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 65/126(52%) | 0/126(0%) | Plus/Plus |
Query 3 S*DSWNRTRLTQLLMR*KKNWML*XXXXXXXXXXXXCG*VFSVTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNPSLD*TYQ 380 S*D N T L +LL R K+NW L** ILI RR+CG* S T NFA HN+ W +GR I+ P R V + *+ K FLI NE + LYG NST E R SKYLK SA NP L *TY+ Subject 13227 S*DLSNHTLLIRLLTRWKRNWTL**RRVILIYLRRNCG*DSSAITANFAPHNVGWCKGRVCIRRPIRSEVSRLI*KTSKSFLIRSNERCQTCLYGDNSTEPERTRRSKYLKRETSASNPYLG*TYR 13604
Grapevine leafroll associated virus 2 isolate 93/955, complete genome
Sequence ID: AY881628.1 Length: 16494 Number of Matches: 7
Range 1: 13218 to 13595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
267.7 bits(578) | 0.0 | 107/126(85%) | 0/126(0%) | Plus/Plus |
Query 2 ILRFVESYTADPAIDALEEELDAIMKLDNPHLSTAQLWVGFFCYYGEFRTAQHRVVPRPDVYKTPESVGGFEINMKNVERFFDKLQRELPSVSLRRQFNGARAYEAFKVFKGGNISFKPISRLNIP 379 ILR+VESYT+DPAIDALE++L+AI+K NPHLSTAQLWVGFFCYYGEFRTAQ RVV RP VYKTP+SVGGFEINMK+VE+FFDKLQRELP+VSLRRQFNGARA+EAFK+FK GNISFKPISRLN+P Subject 13218 ILRYVESYTSDPAIDALEDKLEAILKTSNPHLSTAQLWVGFFCYYGEFRTAQSRVVQRPGVYKTPDSVGGFEINMKDVEKFFDKLQRELPNVSLRRQFNGARAHEAFKIFKNGNISFKPISRLNVP 13595
Range 2: 13301 to 13597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 77/99(78%) | 0/99(0%) | Minus/Minus |
Query 85 LGMFNREMGLKLIFPPLNTLKAS*ALAPLNCRRKETLGNSR*SLSKNLSTFFMFISKPPTDSGVLYTSGLGTTRCCAVRNSP**QKKPTHNCAVER*GL 381 LG F R+MGLKL+FP LN LKAS ALAPLN RRK+TLGNS *SLSKN ST FMFIS PPT+SGVLYT GL TT AVRNSP**QK PTH+CAV+R*GL Subject 13301 LGTFKRDMGLKLMFPFLNILKASCALAPLN*RRKDTLGNSL*SLSKNFSTSFMFISNPPTESGVLYTPGLCTTLL*AVRNSP**QKNPTHSCAVDR*GL 13597
Range 3: 13224 to 13592 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 52/123(42%) | 0/123(0%) | Minus/Minus |
Query 8 YV*SRDGFKADIPAFKYFESLISSSAVELPP*RNAR*LSLKLIKKSFNILHVYFKTTNRLGCFIYVRPRNHTMLCSAKFTVVTEKTYPQLRRREMRIV*LHYSIQFFF*RINSWVSRVRFHES 376 ++ +R GF+ + KYFESL+ S +V+L R SLK I++ +I HVYF++T+ + CFI+ P +++ L AKF +VT+++ P LR R MRI Y QF F R++SW+ RVRF+ S Subject 13224 HIQTRYGFETYVSVLKYFESLMRSGSVKLTSQRYIGQFSLKFIEELLDIFHVYFESTH*VWCFIHTWPLHYSTLSRAKFAIVTKESNP*LRCR*MRIASFQYRFQFVFQRVDSWI*RVRFYVS 13592
Range 4: 13217 to 13588 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 50/124(40%) | 0/124(0%) | Plus/Plus |
Query 1 HPEIRGIVHG*PSY*CVRRRIGCYNEVRQSSSLDGAVVGRFFLLLR*ISHCTTSCGSEAGRI*NTRVGWWF*NKHEEC*KIF**ASTRVTERFFTAAIQRR*SL*GFQSI*RREYQL*THLSIK 372 H +IR I+H SY V R+ G E QSSS+D A +G LLL ISH + ++A +*NTR+ W NKHE C ++ * S R+ + F ++ R S *GFQ+I* R+++ TH++ + Subject 13217 HFKIRRILHVRSSYRRVGRQTGSDTEN*QSSSIDSATMGWILLLLWRISHGSK*SSAKARCV*NTRLSGWIRNKHERCREVLR*TSERIAQCIFATSV*RSQSA*GFQNI*ERKHKFQTHIAFE 13588
Range 5: 13402 to 13575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 26/58(45%) | 0/58(0%) | Minus/Minus |
Query 186 WV*S*YSRL*IL*KPHKL*RR*IAAVKKRSVTLVEAYQKIFQHSSCLFQNHQPTRVFY 359 WV*+ R *I *KPH L R* K L E Y++ +H SCLF+ H + VFY Subject 13402 WV*NLCFRS*IF*KPHALWLR*TDVAKIHWAILSEVYRRTSRHLSCLFRIHPLSLVFY 13575
Range 6: 13225 to 13365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 22/47(47%) | 0/47(0%) | Minus/Minus |
Query 9 CEIHRSNRKNLPTTAPSRDEDCLTSL*HPILLLTHQ*LGQPCTIPRI 149 CEI SN++ P A S DEDC S+ P+ L T +*L C I RI Subject 13225 CEIRHSNKRIQPIVALSIDEDC*FSVSLPVCLPTRR*LDLTCKILRI 13365
Range 7: 13345 to 13575 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 30/77(39%) | 0/77(0%) | Plus/Plus |
Query 129 VTTVNFALHNIVWFRGRTYIKHPSRLVVLK*T*RMLKDFLISFNESYRAFLYGGNSTALELMRLSKYLKAGISALNP 359 VT NFA + +G+ IKH ++ V K*T*+M + I+F E+ +L + T E MRLSKYL+ NP Subject 13345 VTMANFARLKVE*CKGQVCIKHQTQWVDSK*T*KMSRSSSINFRENCPMYLCDVSLTEPERMRLSKYLRTET*VSNP 13575
Nucleotide Sequence (314 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
254.0 | 1368.2 | 43% | 4.541e-66 | 97% | DQ286725.2 | |
252.6 | 1352.6 | 43% | 1.177e-65 | 94% | AY456132.1 | |
252.2 | 1359.0 | 43% | 1.618e-65 | 96% | EF012719.1 | |
243.0 | 816.5 | 42% | 9.28e-63 | 49% | JX513891.1 | |
243.0 | 816.5 | 42% | 9.28e-63 | 49% | EU760831.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 6
Range 1: 11014 to 11325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.0 bits(548) | 0.0 | 101/104(97%) | 0/104(0%) | Minus/Plus |
Query 1 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT 312 FGARQLR*RAKEFHRPMRFFEWL MRVYGQRTISSS ISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQS FKPPFFSYFIRT Subject 11014 FGARQLR*RAKEFHRPMRFFEWLSMRVYGQRTISSSVISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSLFKPPFFSYFIRT 11325
Range 2: 11012 to 11323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 103/104(99%) | 0/104(0%) | Minus/Plus |
Query 3 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 314 CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE Subject 11012 CSVPANYDSVQRNFTDQCVSLSGYQCVYMVNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 11323
Range 3: 11014 to 11325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.7 bits(508) | 0.0 | 101/104(97%) | 0/104(0%) | Plus/Minus |
Query 1 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQAD AAADGSL+IYTH *PLKETHWSVKFLCTLS*LAGTE Subject 11014 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADNAAADGSLTIYTH**PLKETHWSVKFLCTLS*LAGTE 11325
Range 4: 11013 to 11282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
220.5 bits(475) | 0.0 | 87/90(97%) | 0/90(0%) | Plus/Minus |
Query 44 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN 313 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLI LLLMVR PYTRI NHSKKRIGR*NSFARYRNWRAPN Subject 11013 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLITLLLMVR*PYTRIDNHSKKRIGR*NSFARYRNWRAPN 11282
Range 5: 11013 to 11279 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.2 bits(459) | 0.0 | 86/89(97%) | 0/89(0%) | Minus/Plus |
Query 47 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEMW 313 VRCPPITIACKGISPTNAFL*VV NACIW+TNHQQQ YQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEMW Subject 11013 VRCPPITIACKGISPTNAFL*VVINACIWSTNHQQQRYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEMW 11279
Range 6: 11012 to 11278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 86/89(97%) | 0/89(0%) | Plus/Minus |
Query 48 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**SCC*WFVVHIHALVTTQRNALVGEIPLHAIVIGGHRT 314 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS** CC*WFV HIHAL+TTQRNALVGEIPLHAIVIGGHRT Subject 11012 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**RCC*WFVDHIHALITTQRNALVGEIPLHAIVIGGHRT 11278
Grapevine leafroll associated virus 2 strain Alfie membrane associated protein P6 (P6) and Hsp70 like protein genes, complete cds
Sequence ID: AY456132.1 Length: 2466 Number of Matches: 6
Range 1: 841 to 1152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
252.6 bits(545) | 0.0 | 101/104(97%) | 0/104(0%) | Minus/Plus |
Query 1 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT 312 FGA QLR*RAKEFHRPM FFEWL MRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT Subject 841 FGACQLR*RAKEFHRPMCFFEWLSMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT 1152
Range 2: 839 to 1150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 102/104(98%) | 0/104(0%) | Minus/Plus |
Query 3 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 314 CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALSACNLINK+SANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE Subject 839 CSVPANYDSVQRNFTDQCVSLSGYQCVYMVNEPSAAALSACNLINKKSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 1150
Range 3: 841 to 1152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.1 bits(509) | 0.0 | 101/104(97%) | 0/104(0%) | Plus/Minus |
Query 1 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFAD LLIKLQADKAAADGSL+IYTH *PLKETHWSVKFLCTLS*LAGTE Subject 841 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADFLLIKLQADKAAADGSLTIYTH**PLKETHWSVKFLCTLS*LAGTE 1152
Range 4: 840 to 1109 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.2 bits(472) | 0.0 | 86/90(96%) | 0/90(0%) | Plus/Minus |
Query 44 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN 313 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVR PYTRI NHSKK IGR*NSFARYRNW+APN Subject 840 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVR*PYTRIDNHSKKHIGR*NSFARYRNWQAPN 1109
Range 5: 840 to 1106 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.3 bits(446) | 0.0 | 84/89(94%) | 0/89(0%) | Minus/Plus |
Query 47 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEMW 313 VRC PITIACKGISPTN FL*VV NACIW+TNHQQQLYQLAI*SIR+QRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEMW Subject 840 VRCLPITIACKGISPTNVFL*VVINACIWSTNHQQQLYQLAI*SIRNQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEMW 1106
Range 6: 839 to 1105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 84/89(94%) | 0/89(0%) | Plus/Minus |
Query 48 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**SCC*WFVVHIHALVTTQRNALVGEIPLHAIVIGGHRT 314 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR* LID*IAS**SCC*WFV HIHAL+TTQRN LVGEIPLHAIVIG HRT Subject 839 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*FLID*IAS**SCC*WFVDHIHALITTQRNTLVGEIPLHAIVIGRHRT 1105
Grapevine leafroll associated virus 2 isolate PV44 heat shock protein 70 gene, partial cds
Sequence ID: EF012719.1 Length: 828 Number of Matches: 6
Range 1: 450 to 761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
252.2 bits(544) | 0.0 | 101/104(97%) | 0/104(0%) | Minus/Plus |
Query 1 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT 312 FGARQLR*RAKEFHRPMRFFEWL MRVYGQRTISSSFISLQFN *EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRC QSFFKPPFFSYFIRT Subject 450 FGARQLR*RAKEFHRPMRFFEWLSMRVYGQRTISSSFISLQFN**EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCRQSFFKPPFFSYFIRT 761
Range 2: 448 to 759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 103/104(99%) | 0/104(0%) | Minus/Plus |
Query 3 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 314 CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE Subject 448 CSVPANYDSVQRNFTDQCVSLSGYQCVYMVNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 759
Range 3: 450 to 761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.0 bits(513) | 0.0 | 102/104(98%) | 0/104(0%) | Plus/Minus |
Query 1 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSL+IYTH *PLKETHWSVKFLCTLS*LAGTE Subject 450 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLTIYTH**PLKETHWSVKFLCTLS*LAGTE 761
Range 4: 449 to 718 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.7 bits(471) | 0.0 | 87/90(97%) | 0/90(0%) | Plus/Minus |
Query 44 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN 313 C HLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVR PYTRI NHSKKRIGR*NSFARYRNWRAPN Subject 449 CLHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVR*PYTRIDNHSKKRIGR*NSFARYRNWRAPN 718
Range 5: 449 to 712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
208.2 bits(448) | 0.0 | 85/88(97%) | 0/88(0%) | Minus/Plus |
Query 50 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM 313 VRCPPITIACKGISPTNAFL*VV NACIW+TNHQQQLYQLAI* IRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM Subject 449 VRCPPITIACKGISPTNAFL*VVINACIWSTNHQQQLYQLAI*LIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM 712
Range 6: 448 to 714 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 85/89(96%) | 0/89(0%) | Plus/Minus |
Query 48 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**SCC*WFVVHIHALVTTQRNALVGEIPLHAIVIGGHRT 314 +ISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLI+*IAS**SCC*WFV HIHAL+TTQRNALVGEIPLHAIVIGGHRT Subject 448 YISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLIN*IAS**SCC*WFVDHIHALITTQRNALVGEIPLHAIVIGGHRT 714
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 6
Range 1: 10987 to 11298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.0 bits(524) | 0.0 | 101/104(97%) | 0/104(0%) | Minus/Plus |
Query 3 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 314 CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALSACNLINK+SANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFL HLFSLTSLE Subject 10987 CSVPANYDSVQRNFTDQCVSLSGYQCVYMVNEPSAAALSACNLINKKSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLTHLFSLTSLE 11298
Range 2: 10989 to 11300 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 83/104(80%) | 0/104(0%) | Plus/Minus |
Query 1 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 GS +VREKR +KALSTSLPP+F+SPPEARTTNVLLR*E++DTSKVPPPKSYTA+FAD L I+L ADKAAA+GSL++YTH *PLKETH SVKFL TLS* AGTE Subject 10989 GSKDVREKR*VRKALSTSLPPKFKSPPEARTTNVLLR*EIIDTSKVPPPKSYTAKFADFLFIRLHADKAAAEGSLTMYTH**PLKETH*SVKFL*TLS*FAGTE 11300
Range 3: 10989 to 11300 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 52/104(50%) | 0/104(0%) | Minus/Plus |
Query 1 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT 312 F A +L ++EFH +RF EWL M V+GQRT FIS+Q ++ E+ E G IRFW W+F RV++FLPQQ++ ARF R + GRK C QS FFS +RT Subject 10989 FSASEL*QCSEEFH*SVRFLEWLSMCVHGQRTFRGCFISVQSDKQEVGELGCIRFWRWDFRRVYYFLPQQYIRSARFWRRFKFGRKGC*QSLSDSSFFSNILRT 11300
Range 4: 10987 to 11253 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 46/89(52%) | 0/89(0%) | Plus/Minus |
Query 48 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**SCC*WFVVHIHALVTTQRNALVGEIPLHAIVIGGHRT 314 +I S+QI +S SAH++ +VAV N+ HV+S T+KIVY Q+R L+ IA **S FV H+H L+TTQ NAL+ EIPL+ ++I H T Subject 10987 NIPSSQI*ISSRSAHYECIVAVGNNRHVESPTSKIVYSQVRRLLVYQIAR**SSRGRFVDHVHTLITTQGNALISEIPLNTVIIRWH*T 11253
Range 5: 10988 to 11251 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/88(52%) | 0/88(0%) | Minus/Plus |
Query 50 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM 313 V+C I +GIS +AF *VV N C W+TN + LYQ AI* R +R W YTIL V L TC F TAT CAL E *IW E M Subject 10988 VQCQRIMTVFRGISLISAFP*VVINVCTWSTNLPRLLYQRAI**TRSRRTWLYTILEVGLSTCLLFPTATIHS*CALLEEI*IWEEGM 11251
Range 6: 10988 to 11257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 44/90(49%) | 0/90(0%) | Plus/Minus |
Query 44 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN 313 C H F P+ L +KRA + CCG+K* TR+K H QNRI P S S +C LIK VR P T I NHS+KR +*NS N A N Subject 10988 CQHPFLPNLNLLQKRALRMYCCGRK**TRRKSHLQNRIQPSSPTSCLSDCTLIKQPRKVR*PCTHIDNHSRKRTDQ*NSSEHCHNSLALN 11257
Grapevine leafroll associated virus 2 strain Red Globe isolate WA Chot1 heat shock protein 70 like protein (HSP70h) gene, partial cds
Sequence ID: EU760831.1 Length: 551 Number of Matches: 6
Range 1: 222 to 533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.0 bits(524) | 0.0 | 101/104(97%) | 0/104(0%) | Minus/Plus |
Query 3 CSVPANYDSVQRNFTDQCVSLSGYQCVYMDNEPSAAALSACNLINKRSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLNHLFSLTSLE 314 CSVPANYDSVQRNFTDQCVSLSGYQCVYM NEPSAAALSACNLINK+SANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFL HLFSLTSLE Subject 222 CSVPANYDSVQRNFTDQCVSLSGYQCVYMVNEPSAAALSACNLINKKSANLAVYDFGGGTFDVSIISYRNNTFVVRASGGDLNLGGRDVDRAFLTHLFSLTSLE 533
Range 2: 224 to 535 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 83/104(80%) | 0/104(0%) | Plus/Minus |
Query 1 GSNEVREKRWFKKALSTSLPPRFRSPPEARTTNVLLR*EMMDTSKVPPPKSYTARFADLLLIKLQADKAAADGSLSIYTHW*PLKETHWSVKFLCTLS*LAGTE 312 GS +VREKR +KALSTSLPP+F+SPPEARTTNVLLR*E++DTSKVPPPKSYTA+FAD L I+L ADKAAA+GSL++YTH *PLKETH SVKFL TLS* AGTE Subject 224 GSKDVREKR*VRKALSTSLPPKFKSPPEARTTNVLLR*EIIDTSKVPPPKSYTAKFADFLFIRLHADKAAAEGSLTMYTH**PLKETH*SVKFL*TLS*FAGTE 535
Range 3: 224 to 535 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 52/104(50%) | 0/104(0%) | Minus/Plus |
Query 1 FGARQLR*RAKEFHRPMRFFEWLPMRVYGQRTISSSFISLQFNQ*EISESGGIRFWWWNF*RVHHFLPQQHVCGARFRGRPESGRKRCGQSFFKPPFFSYFIRT 312 F A +L ++EFH +RF EWL M V+GQRT FIS+Q ++ E+ E G IRFW W+F RV++FLPQQ++ ARF R + GRK C QS FFS +RT Subject 224 FSASEL*QCSEEFH*SVRFLEWLSMCVHGQRTFRGCFISVQSDKQEVGELGCIRFWRWDFRRVYYFLPQQYIRSARFWRRFKFGRKGC*QSLSDSSFFSNILRT 535
Range 4: 222 to 488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 46/89(52%) | 0/89(0%) | Plus/Minus |
Query 48 HISSAQIQVSPGSAHHKRVVAVRNDGHVKSSTTKIVYRQIR*SLID*IAS**SCC*WFVVHIHALVTTQRNALVGEIPLHAIVIGGHRT 314 +I S+QI +S SAH++ +VAV N+ HV+S T+KIVY Q+R L+ IA **S FV H+H L+TTQ NAL+ EIPL+ ++I H T Subject 222 NIPSSQI*ISSRSAHYECIVAVGNNRHVESPTSKIVYSQVRRLLVYQIAR**SSRGRFVDHVHTLITTQGNALISEIPLNTVIIRWH*T 488
Range 5: 223 to 486 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/88(52%) | 0/88(0%) | Minus/Plus |
Query 50 VRCPPITIACKGISPTNAFL*VVTNACIWTTNHQQQLYQLAI*SIRDQRIWRYTILVVELLTCPSFLTATTRLWCALPGET*IWAEEM 313 V+C I +GIS +AF *VV N C W+TN + LYQ AI* R +R W YTIL V L TC F TAT CAL E *IW E M Subject 223 VQCQRIMTVFRGISLISAFP*VVINVCTWSTNLPRLLYQRAI**TRSRRTWLYTILEVGLSTCLLFPTATIHS*CALLEEI*IWEEGM 486
Range 6: 223 to 492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 44/90(49%) | 0/90(0%) | Plus/Minus |
Query 44 CPHLFRPDSGLPRKRAPQTCCCGKK*WTRQKFHHQNRIPPDSLISY*LNCKLIKLLLMVRCPYTRIGNHSKKRIGR*NSFARYRNWRAPN 313 C H F P+ L +KRA + CCG+K* TR+K H QNRI P S S +C LIK VR P T I NHS+KR +*NS N A N Subject 223 CQHPFLPNLNLLQKRALRMYCCGRK**TRRKSHLQNRIQPSSPTSCLSDCTLIKQPRKVR*PCTHIDNHSRKRTDQ*NSSEHCHNSLALN 492
Nucleotide Sequence (459 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
344.7 | 1855.3 | 39% | 4.204e-93 | 97% | DQ286725.2 | |
337.4 | 1062.3 | 30% | 6.77e-91 | 45% | KX774192.1 | |
339.7 | 1271.1 | 27% | 1.383e-91 | 56% | NC_004724.1 | |
339.7 | 1266.9 | 27% | 1.383e-91 | 55% | JX513891.1 | |
339.7 | 1271.1 | 27% | 1.383e-91 | 56% | AF314061.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 9
Range 1: 8105 to 8527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
344.7 bits(746) | 0.0 | 141/141(100%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH Subject 8105 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 8527
Range 2: 8084 to 8527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.4 bits(730) | 0.0 | 144/148(97%) | 0/148(0%) | Minus/Minus |
Query 15 VSNGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH 458 VSNGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALS TLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLST P+ H Subject 8084 VSNGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSLTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTIPKNH 8527
Range 3: 8094 to 8528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.1 bits(701) | 0.0 | 143/145(99%) | 0/145(0%) | Plus/Plus |
Query 25 GWVDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNPLDT 459 G VDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARV+ERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNPLDT Subject 8094 GIVDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVRERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNPLDT 8528
Range 4: 8100 to 8408 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.5 bits(549) | 0.0 | 101/103(98%) | 0/103(0%) | Minus/Minus |
Query 31 YEQNVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESVN 339 YEQNVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSF HSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESV+ Subject 8100 YEQNVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFPHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESVD 8408
Range 5: 8445 to 8528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.4 bits(143) | 0.0 | 28/28(100%) | 0/28(0%) | Minus/Minus |
Query 376 CV*WI*KVRPPEISTLLGSHARMFRLEP 459 CV*WI*KVRPPEISTLLGSHARMFRLEP Subject 8445 CV*WI*KVRPPEISTLLGSHARMFRLEP 8528
Range 6: 8164 to 8526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
269.1 bits(581) | 0.0 | 121/121(100%) | 0/121(0%) | Minus/Minus |
Query 95 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN 457 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN Subject 8164 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN 8526
Range 7: 8263 to 8409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 48/49(98%) | 0/49(0%) | Plus/Plus |
Query 194 HCQRRE*RKEQYAHQ*N*LGGRFSPRCRVYLFVHASVRKTGN*QTFCS* 340 HCQRRE* KEQYAHQ*N*LGGRFSPRCRVYLFVHASVRKTGN*QTFCS* Subject 8263 HCQRRE*GKEQYAHQ*N*LGGRFSPRCRVYLFVHASVRKTGN*QTFCS* 8409
Grapevine leafroll associated virus 2 isolate ISA BR, complete genome
Sequence ID: KX774192.1 Length: 16491 Number of Matches: 10
Range 1: 8105 to 8527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.4 bits(730) | 0.0 | 136/141(96%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLS VY N+IATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHF+RKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKS+RH Subject 8105 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSTVYGNLIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFIRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSVRH 8527
Range 2: 8089 to 8526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.0 bits(489) | 0.0 | 119/146(82%) | 0/146(0%) | Minus/Minus |
Query 20 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTNXXXXXXXXXXXXXXSM**ICQPIPK 457 CL DLKGSSS*N + TRFTRAYVSP ASCTV+TLSLV PLR KCLLISSFSD*S+H+ V+PTSGTKSSTELISLMRILL PSLSP TVAI L T LNQA TSHGQR*+TLP*TRHC+STNLSRSP +HLSSSFLSM* IC+ PK Subject 8089 CLTDLKGSSS*NLSRTRFTRAYVSPCASCTVRTLSLVKPLRIKCLLISSFSD*SIHRYVEPTSGTKSSTELISLMRILLLPSLSPFTVAIKLPYTVLNQAHTSHGQR*ETLP*TRHCKSTNLSRSPYKHLSSSFLSM*CICRLSPK 8526
Range 3: 8084 to 8527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 69/148(47%) | 0/148(0%) | Minus/Minus |
Query 15 VSNGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH 458 V + + F+LLK + VHTRV L +H NVK S* +K+ ANFQ LKH QI ++ + I++ +NF+DAHT L+FT F + V V+ A PSA +P TT+G++TVN+TLQVHEPI+ISV TL+ + NV+ L P+ H Subject 8084 VPDRLKGFILLKLKSNKVHTRVRLTLRFMHRQNVKLS*TLADKVLANFQLLRLKHTQIRGTHVRNQIIN*INFVDAHTTLTFTFTFHGSD*VTVHCA*PSAHVPWTTVGNITVNSTLQVHEPIEISV*TLV*FVPLNVVYLPAIPEDH 8527
Range 4: 8094 to 8330 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 42/79(53%) | 0/79(0%) | Plus/Plus |
Query 25 GWVDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI 261 G ++ TL+ + SV+TEI IGSWTCNV FTV P VV G ALG*A T+T* K +VK R VCAS KL + I Subject 8094 GIAGKYTTLRGTN*TSVYTEISIGSWTCNVEFTVMFPTVVHGTCALG*AQCTVT*SLP*KVKVKVRVVCASTKLIQLMI 8330
Range 5: 8355 to 8507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 27/51(53%) | 0/51(0%) | Plus/Plus |
Query 286 ICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTN 438 IC CFS ++WKLA+ L + *L+LTF* C + K + TRV*T +FRR N Subject 8355 ICVCFSRRSWKLASTLSARV*LSLTF*RCMKRKVRRTRV*TLFDLSFRRMN 8507
Range 6: 8112 to 8399 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 44/96(46%) | 0/96(0%) | Minus/Minus |
Query 43 NVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCN 330 + C*FP TEA T+ + N +*F *CAY S+LH L + + YR TKR P DN R YRK DIA PRTY+DLR +T QC+ Subject 8112 SAC*FPASPTEAYTDTWNPRQEPNHQLN*FR*CAYYSYLHFHLSR*RLSYRTLCLTKRTRPMDNGRKHYRKLDIASPRTYRDLRINTCLVRSSQCS 8399
Range 7: 8451 to 8528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 13/26(50%) | 0/26(0%) | Minus/Minus |
Query 382 CV*WI*KVRPPEISTLLGSHARMFRL 459 C * *+V PPE GSHAR L Subject 8451 CA*QT*RVHPPET*VEQGSHARTSHL 8528
Range 8: 8107 to 8220 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 21/38(55%) | 0/38(0%) | Plus/Plus |
Query 38 DSLH*KK*A**VSLRRS**VRGPAMSCLR*RVLSLSVG 151 ++LH*++ V +RRS *VRG AMS LR* L LS+G Subject 8107 NTLH*EERTRQVFIRRSR*VRGLAMSSLR*CFLPLSMG 8220
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 9
Range 1: 8090 to 8512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.7 bits(735) | 0.0 | 137/141(97%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDN+IATVKGESEGKSSMRINEINSVDDLVPD+GSTYLCMLQSEKLEISKHF+RKGL+KLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH Subject 8090 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINEINSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 8512
Range 2: 8149 to 8511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.2 bits(542) | 0.0 | 113/121(93%) | 0/121(0%) | Minus/Minus |
Query 95 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN 457 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSL SPLR KCLLIS+FSD*SMHK*V+P SGTKSSTELISLMR+LLFPSLSPLTVAI LS*TTLNQAQTSHGQR DTLP*TRHCRSTN Subject 8149 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLESPLRMKCLLISNFSD*SMHK*VEPISGTKSSTELISLMRMLLFPSLSPLTVAIMLS*TTLNQAQTSHGQRYDTLP*TRHCRSTN 8511
Range 3: 8069 to 8506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 82/146(56%) | 0/146(0%) | Minus/Minus |
Query 15 NGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH 452 +GF+R VLLKFQ + +H RVC LSLVHG ++KF PF ++M +F LKHAQ+SR +IGD*+VHRV+F++AH SF + G+HV++NNA P AD+P T + HVTV+TTLQV+EP+K+SVK L++ ISFN+MNLST + H Subject 8069 DGFKRLVLLKFQSHQIHARVCLTLSLVHGQDIKFREPFADEMLTDF*LLRLKHAQVSRTHIGD*VVHRVDFVNAHATFSFAFTLNGGDHVVINNA*PGADVPWTAVRHVTVDTTLQVYEPVKVSVKALVEFISFNIMNLSTVSEDH 8506
Range 4: 8085 to 8504 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 84/140(60%) | 0/140(0%) | Plus/Plus |
Query 31 VDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNP 450 VDRFI LKEM+ S FTE L GS TCNVV TVTC V G SA G*ALF T* P + + KE+ CA K TRWT *SP+ LL CACFS ++ K +I KG LNL *PCTRLK +HTR * * *NFRRT+L NP Subject 8085 VDRFIILKEMNSTSAFTETLTGS*TCNVVSTVTCRTAVHGTSAPG*ALFMTT*SPPLRVKAKEKVACALTKSTRWTT*SPIWVLLTCACFSLRS*KSVSISSAKGSLNLMS*PCTRLKVRHTRA*IW*D*NFRRTSLLNP 8504
Range 5: 8085 to 8384 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 59/100(59%) | 0/100(0%) | Minus/Minus |
Query 31 NVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESVN 330 N *F +TEACT+K* +RGL+RPPS*F *CA FL *+W+S KQR T+RR P D+ TRYR+HDIAG RT Q LRK T + HFFQ NESV+ Subject 8085 NAY*FLTSQTEACTSK*NPYRGLSRPPS*FR*CACYFFLRFHP*RWRSCCHKQRLTRRRRPMDSGTTRYRRHDIAGLRTCQGLRKGTCRVHFFQYNESVD 8384
Range 6: 8430 to 8507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/26(69%) | 0/26(0%) | Minus/Minus |
Query 376 *WI*KVRPPEISTLLGSHARMFRLEP 453 *WI*K RPPEIS S ARM LEP Subject 8430 *WI*KARPPEISISPDSRARMSHLEP 8507
Range 7: 8089 to 8205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 28/39(72%) | 0/39(0%) | Plus/Plus |
Query 35 TDSLH*KK*A**VSLRRS**VRGPAMSCLR*RVLSLSVG 151 TDSL+*KK* V LRR * VR PAMSCLR*RV+ LS+G Subject 8089 TDSLY*KK*TRQVPLRRP*QVRRPAMSCLR*RVVPLSMG 8205
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 9
Range 1: 8078 to 8500 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.7 bits(735) | 0.0 | 137/141(97%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDN+IATVKGESEGKSSMRINEINSVDDLVPD+GSTYLCMLQSEKLEISKHF+RKGL+KLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH Subject 8078 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINEINSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 8500
Range 2: 8137 to 8499 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.2 bits(542) | 0.0 | 113/121(93%) | 0/121(0%) | Minus/Minus |
Query 95 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN 457 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSL SPLR KCLLIS+FSD*SMHK*V+P SGTKSSTELISLMR+LLFPSLSPLTVAI LS*TTLNQAQTSHGQR DTLP*TRHCRSTN Subject 8137 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLESPLRMKCLLISNFSD*SMHK*VEPMSGTKSSTELISLMRMLLFPSLSPLTVAIMLS*TTLNQAQTSHGQRYDTLP*TRHCRSTN 8499
Range 3: 8057 to 8494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.5 bits(453) | 0.0 | 81/146(55%) | 0/146(0%) | Minus/Minus |
Query 15 NGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH 452 +GF+R VLLKFQ + +H RVC LSLVHG ++KF PF ++M +F LKHAQ+SR ++GD*+VHRV+F++AH SF + G+HV++NNA P AD+P T + HVTV+TTLQV+EP+K+SVK L++ ISFN+MNLST + H Subject 8057 DGFKRLVLLKFQSHQIHARVCLTLSLVHGQDIKFREPFADEMLTDF*LLRLKHAQVSRTHVGD*VVHRVDFVNAHATFSFAFTLNGGDHVVINNA*PGADVPWTAVRHVTVDTTLQVYEPVKVSVKALVEFISFNIMNLSTVSEDH 8494
Range 4: 8073 to 8492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 84/140(60%) | 0/140(0%) | Plus/Plus |
Query 31 VDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNP 450 VDRFI LKEM+ S FTE L GS TCNVV TVTC V G SA G*ALF T* P + + KE+ CA K TRWT *SP LL CACFS ++ K +I KG LNL *PCTRLK +HTR * * *NFRRT+L NP Subject 8073 VDRFIILKEMNSTSAFTETLTGS*TCNVVSTVTCRTAVHGTSAPG*ALFMTT*SPPLRVKAKEKVACALTKSTRWTT*SPTWVLLTCACFSLRS*KSVSISSAKGSLNLMS*PCTRLKVRHTRA*IW*D*NFRRTSLLNP 8492
Range 5: 8073 to 8372 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.6 bits(270) | 0.0 | 59/100(59%) | 0/100(0%) | Minus/Minus |
Query 31 NVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESVN 330 N *F +TEACT+K* RGL+RPPS*F *CA FL *+W+S KQR T+RR P D+ TRYR+HDIAG RT Q LRK T + HFFQ NESV+ Subject 8073 NAY*FLTSQTEACTSK*NPCRGLSRPPS*FR*CACYFFLRFHP*RWRSCCHKQRLTRRRRPMDSGTTRYRRHDIAGLRTCQGLRKGTCRVHFFQYNESVD 8372
Range 6: 8418 to 8495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/26(69%) | 0/26(0%) | Minus/Minus |
Query 376 *WI*KVRPPEISTLLGSHARMFRLEP 453 *WI*K RPPEIS S ARM LEP Subject 8418 *WI*KARPPEISISPDSRARMSHLEP 8495
Range 7: 8077 to 8193 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 28/39(72%) | 0/39(0%) | Plus/Plus |
Query 35 TDSLH*KK*A**VSLRRS**VRGPAMSCLR*RVLSLSVG 151 TDSL+*KK* V LRR * VR PAMSCLR*RV+ LS+G Subject 8077 TDSLY*KK*TRQVPLRRP*QVRRPAMSCLR*RVVPLSMG 8193
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 9
Range 1: 8090 to 8512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.7 bits(735) | 0.0 | 137/141(97%) | 0/141(0%) | Plus/Plus |
Query 36 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNVIATVKGESEGKSSMRINEINSVDDLVPDVGSTYLCMLQSEKLEISKHFVRKGLTKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 458 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDN+IATVKGESEGKSSMRINEINSVDDLVPD+GSTYLCMLQSEKLEISKHF+RKGL+KLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH Subject 8090 QIHYIERNELDKCLYGDLDRFVDLQCRVYGNVSYRCPWDVCAWLSVVYDNMIATVKGESEGKSSMRINEINSVDDLVPDMGSTYLCMLQSEKLEISKHFIRKGLSKLNVLTVHEAQGETYARVNLVRLKFQEDEPFKSIRH 8512
Range 2: 8149 to 8511 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.2 bits(542) | 0.0 | 113/121(93%) | 0/121(0%) | Minus/Minus |
Query 95 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLVSPLRTKCLLISSFSD*SMHK*VDPTSGTKSSTELISLMRILLFPSLSPLTVAITLS*TTLNQAQTSHGQR*DTLP*TRHCRSTN 457 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSL SPLR KCLLIS+FSD*SMHK*V+P SGTKSSTELISLMR+LLFPSLSPLTVAI LS*TTLNQAQTSHGQR DTLP*TRHCRSTN Subject 8149 CLMDLKGSSS*NFNLTRFTRAYVSP*ASCTVKTLSLESPLRMKCLLISNFSD*SMHK*VEPISGTKSSTELISLMRMLLFPSLSPLTVAIMLS*TTLNQAQTSHGQRYDTLP*TRHCRSTN 8511
Range 3: 8069 to 8506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 82/146(56%) | 0/146(0%) | Minus/Minus |
Query 15 NGFERFVLLKFQPY*VHTRVCFALSLVHG*NVKFS*PFTNKMFANFQFFGLKHAQISRPYIGD*IVHRVNFIDAHTALSFTLAFDSGNHVIVNNAQPSADIPRTTIGHVTVNTTLQVHEPIKISVKTLIKLISFNVMNLSTHPQTH 452 +GF+R VLLKFQ + +H RVC LSLVHG ++KF PF ++M +F LKHAQ+SR +IGD*+VHRV+F++AH SF + G+HV++NNA P AD+P T + HVTV+TTLQV+EP+K+SVK L++ ISFN+MNLST + H Subject 8069 DGFKRLVLLKFQSHQIHARVCLTLSLVHGQDIKFREPFADEMLTDF*LLRLKHAQVSRTHIGD*VVHRVDFVNAHATFSFAFTLNGGDHVVINNA*PGADVPWTAVRHVTVDTTLQVYEPVKVSVKALVEFISFNIMNLSTVSEDH 8506
Range 4: 8085 to 8504 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(367) | 0.0 | 84/140(60%) | 0/140(0%) | Plus/Plus |
Query 31 VDRFITLKEMSLISVFTEILIGSWTCNVVFTVTCPIVVRGMSALG*ALFTIT*LPLSKARVKERAVCASMKLTRWTI*SPM*GLLICACFSPKNWKLANILFVKG*LNLTF*PCTRLKAKHTRV*T**G*NFRRTNLSNP 450 VDRFI LKEM+ S FTE L GS TCNVV TVTC V G SA G*ALF T* P + + KE+ CA K TRWT *SP+ LL CACFS ++ K +I KG LNL *PCTRLK +HTR * * *NFRRT+L NP Subject 8085 VDRFIILKEMNSTSAFTETLTGS*TCNVVSTVTCRTAVHGTSAPG*ALFMTT*SPPLRVKAKEKVACALTKSTRWTT*SPIWVLLTCACFSLRS*KSVSISSAKGSLNLMS*PCTRLKVRHTRA*IW*D*NFRRTSLLNP 8504
Range 5: 8085 to 8384 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 59/100(59%) | 0/100(0%) | Minus/Minus |
Query 31 NVC*FPVFRTEACTNK*TLHRGLNRPPS*FH*CAYCSFLHSRL*QWQSRYRKQRSTKRRHPTDNDRTRYRKHDIAGPRTYQDLRKDTYQAHFFQCNESVN 330 N *F +TEACT+K* +RGL+RPPS*F *CA FL *+W+S KQR T+RR P D+ TRYR+HDIAG RT Q LRK T + HFFQ NESV+ Subject 8085 NAY*FLTSQTEACTSK*NPYRGLSRPPS*FR*CACYFFLRFHP*RWRSCCHKQRLTRRRRPMDSGTTRYRRHDIAGLRTCQGLRKGTCRVHFFQYNESVD 8384
Range 6: 8430 to 8507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/26(69%) | 0/26(0%) | Minus/Minus |
Query 376 *WI*KVRPPEISTLLGSHARMFRLEP 453 *WI*K RPPEIS S ARM LEP Subject 8430 *WI*KARPPEISISPDSRARMSHLEP 8507
Range 7: 8089 to 8205 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 28/39(72%) | 0/39(0%) | Plus/Plus |
Query 35 TDSLH*KK*A**VSLRRS**VRGPAMSCLR*RVLSLSVG 151 TDSL+*KK* V LRR * VR PAMSCLR*RV+ LS+G Subject 8089 TDSLY*KK*TRQVPLRRP*QVRRPAMSCLR*RVVPLSMG 8205
Nucleotide Sequence (887 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
675.5 | 3715.1 | 30% | 0 | 92% | DQ286725.2 | |
288.8 | 1385.4 | 18% | 2.772e-101 | 36% | JX513891.1 | |
279.2 | 1347.9 | 18% | 1.666e-99 | 35% | NC_004724.1 | |
279.2 | 1347.9 | 18% | 1.666e-99 | 35% | AF314061.1 | |
144.5 | 610.0 | 14% | 1.05e-65 | 26% | AF039204.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 12
Range 1: 5999 to 6877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
675.5 bits(1468) | 0.0 | 289/293(99%) | 0/293(0%) | Plus/Minus |
Query 7 GWYDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRS*LSGVVDTPFGLKEKQRQHRRNRPRDERETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSSKR**KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P*ATHAIL*KSLNIFTH 885 GWYD HSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCR *LSGVVDTPFGLKEKQRQHRRNRPRDE ETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSSKR**KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P* THAIL*KSLNIFTH Subject 5999 GWYDWHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRG*LSGVVDTPFGLKEKQRQHRRNRPRDE*ETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSSKR**KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P*TTHAIL*KSLNIFTH 6877
Range 2: 5997 to 6536 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
423.5 bits(918) | 0.0 | 179/180(99%) | 0/180(0%) | Minus/Plus |
Query 348 SCVNMFKDF*RIACVA*G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AGWRVIIFYHLFDDCLTD*R*SLRGGVMLLRSAIIVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFASH 887 SCVNMFKDF*RIACV *G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AGWRVIIFYHLFDDCLTD*R*SLRGGVMLLRSAIIVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFASH Subject 5997 SCVNMFKDF*RIACVV*G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AGWRVIIFYHLFDDCLTD*R*SLRGGVMLLRSAIIVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFASH 6536
Range 3: 6573 to 6878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 99/102(97%) | 0/102(0%) | Minus/Plus |
Query 6 GVSLSSRGRFLLCWRCFSFNPKGVSTTPES*LRHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELCRSYHP 311 GVS SSRGRFLLCWRCFSFNPKGVSTTPES* RHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELC+SYHP Subject 6573 GVSHSSRGRFLLCWRCFSFNPKGVSTTPES*PRHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELCQSYHP 6878
Range 4: 5997 to 6518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
421.7 bits(914) | 0.0 | 173/174(99%) | 0/174(0%) | Plus/Minus |
Query 366 ICCSASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTLSYACDPLKVFEHIHAR 887 ICCSASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTL+YACDPLKVFEHIHAR Subject 5997 ICCSASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTLNYACDPLKVFEHIHAR 6518
Range 5: 6621 to 6878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 84/86(98%) | 0/86(0%) | Plus/Minus |
Query 6 WMV*PAQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMP*LTFRSSRHTFRVEGE 263 WMV* AQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMP LTFRSSRHTFRVEGE Subject 6621 WMV*LAQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMPWLTFRSSRHTFRVEGE 6878
Range 6: 5999 to 6793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
563.7 bits(1224) | 0.0 | 264/265(100%) | 0/265(0%) | Minus/Plus |
Query 91 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLWCXXXXXXXXXXXXSWAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV 885 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNLLSSFRRLSDRLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLWCLLMRMSRLALSLSWAGCKCVYSHYNIF LCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV Subject 5999 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNLLSSFRRLSDRLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLWCLLMRMSRLALSLSWAGCKCVYSHYNIFLLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV 6793
Range 7: 5998 to 6774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
563.7 bits(1224) | 0.0 | 257/259(99%) | 0/259(0%) | Plus/Minus |
Query 110 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFXXXXXXXXXXXXLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 886 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREM EKPPTTLAITFTSSTNETQR+NML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFNRSDNRRKDDRRLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT Subject 5998 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMNEKPPTTLAITFTSSTNETQRRNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFNRSDNRRKDDRRLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 6774
Range 8: 6842 to 6877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 12/12(100%) | 0/12(0%) | Minus/Plus |
Query 7 YPCQRAVPVIPS 42 YPCQRAVPVIPS Subject 6842 YPCQRAVPVIPS 6877
Range 9: 6844 to 6879 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 11/12(92%) | 0/12(0%) | Plus/Minus |
Query 5 VDGMTGTALWHG 40 +DGMTGTALWHG Subject 6844 LDGMTGTALWHG 6879
Range 10: 6298 to 6876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
415.3 bits(900) | 0.0 | 189/193(98%) | 0/193(0%) | Minus/Plus |
Query 8 V*PIEGDL*EXXXXXXVRLSSFVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHTI 586 V*PIEGDL*EVV*CCCVRLSSFVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHI SLRLISRGGKRYRESCRGFL HLAAGFFCAGAASPSTRKVCRLLRKVS+GIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCA HTI Subject 6298 V*PIEGDL*EVV*CCCVRLSSFVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHIPSLRLISRGGKRYRESCRGFLIHLAAGFFCAGAASPSTRKVCRLLRKVSHGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCASHTI 6876
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 14
Range 1: 5972 to 6409 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 94/146(64%) | 0/146(0%) | Minus/Plus |
Query 448 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW 885 VR+YV+ LK RMR LGL NEHVV+SF E+VPLLLR+KLS TF+ RA+ KW E CLSA+RREK FAL C+V LGFP+F R +GGV CD LLSS RR DR+ V K CDA G LFH D +GDSTS+GLKGGGSQ+FLW Subject 5972 VRKYVKNFLKSRMRGLGLRNEHVVNSFGELVPLLLRNKLSETFIYRAVPMSKWCWEVCLSAERREKFFALVCLVTLGFPYFARLLGGVVCDKLLSSLRRAYDRVIVFLKERCDAAMNGLRCLFHFDGNGDSTSAGLKGGGSQTFLW 6409
Range 2: 6452 to 6766 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.6 bits(390) | 0.0 | 70/105(67%) | 0/105(0%) | Minus/Plus |
Query 91 WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV 405 +AGCKCV+SH+N+FFLCVSLVEEVN+IA+++GG SF SRP+SS LA +LLQPER V+YSGKL+T F F ISPRVPL +K FFEW+ + LL+ +RRFLR++AV Subject 6452 YAGCKCVFSHHNLFFLCVSLVEEVNMIAKILGGLSFFSRPISSALAFVLLQPERFVEYSGKLSTTFLFFLKISPRVPLKIKGFFEWVAGNPLLRGVRRFLRLIAV 6766
Range 3: 6815 to 6850 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/12(92%) | 0/12(0%) | Minus/Plus |
Query 7 YPCQRAVPVIPS 42 YP QRAVPVIPS Subject 6815 YPSQRAVPVIPS 6850
Range 4: 5971 to 6747 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
288.8 bits(624) | 0.0 | 142/259(55%) | 0/259(0%) | Plus/Minus |
Query 110 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFXXXXXXXXXXXXLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 886 NLR +R L HSKN GTRGEI ++N+ V NFPE ST+LSG +R++AS ++ GRE +KPP AI FTSST ET +KN L CE THLQPA K+SA+R R N+ RN CEPPPFKP DVESP S+ NK+ P ASH + T RS RR +D+ LSH TPP R K G P T H AK+FS RSAD+ S HHF AR V DNL R+SSGT S E TTCS L PK RMR FK TY RT Subject 5971 NLRTPLNRGLPATHSKNPLILRGTRGEILRKNKKVVLNFPEYSTNLSGCKRTNASADDIGREKNDKPPRIFAIMFTSSTKETHKKNRLWCEKTHLQPA*PKDSAKRTKRNNKPHRNVCEPPPFKPADVESPFPSK*NKQRNPFMAASHRSFRKTITRSYARRNEDKSLSHTTPPKRRAK*GNPRVTKHTSAKNFSRRSADKHTSQHHFDMGTAR*MKVSDNLFRKSSGTNSPNEFTTCSFLRPKPRMRLFKKFLTYLRT 6747
Range 5: 6817 to 6852 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/12(75%) | 0/12(0%) | Plus/Minus |
Query 5 VDGMTGTALWHG 40 +DG+TGTALW G Subject 6817 LDGITGTALWLG 6852
Range 6: 5972 to 6250 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Minus |
Query 607 KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P*ATHAIL*KSLNIFTH 885 ++I +P T E K+Q D E E+ +S QA F P + GDR+I + RQL+ *+ WH L +R H++FV+* HA *K N+ H Subject 5972 ELIAHYPTQKTSEVGKSQSD*AHEREKLFPPLS*QAHFPAPLRHGDRTIDESFRQLVS*EQWHQLPERIHYMFVS*TQTAHATF*KVFNVLAH 6250
Range 7: 6584 to 6847 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 38/88(43%) | 0/88(0%) | Plus/Minus |
Query 10 WYDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRS*LSGVVDTPFGLKEKQRQ 273 WY+RH LA +T ++SL SKVQ H + AK+ N R YPL+K F + +ARR+ EKK+K R+ LS V++ P GL + + Q Subject 6584 WYNRHGPLAGVTTISRSQSSLPSKVQLHRDQAKESPNAPQ*RITGYPLEKPFDLERHARRNFEKKQKSRAQLSRVLNEPLGL*KNECQ 6847
Range 8: 6263 to 6562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 44/100(44%) | 0/100(0%) | Plus/Minus |
Query 295 DERETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSS 594 +ER+TP N RD+V+L +* DA ++ +VVR NALTT Q R+T *QAP KRLRA+ *T RC I I + M+ T +T L + +V ++S Subject 6263 EERQTP*NFRDHVHLFN*GDA*EK*IVVRENALTTRVAQR*RKTH*T**QAP*KRLRATAL*TGRCGITIPVKMK*TTQPIHGCVTSLL*KNYHTVVRTS 6562
Range 9: 6334 to 6849 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 68/172(40%) | 0/172(0%) | Minus/Plus |
Query 8 FVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHTI 523 F+ * W F+I FK LA VS+ V A A L L*VR LA Q I +RL+S G+ RE+ RGF+ L AG S + R+V +L KV + FV +N S+R + ++VF V + S + S++ S E EPSKEER+ + W L PK AG+TI Subject 6334 FISF*REW*FHICRFKGRWLANVSMGLVITFSAFCAIFGLRGL*VRFLAPQSIFLMRLLS*RGEHDRENSRGFVVLLTTNIISAGIRSFTAREVR*VLWKVEHDFFVFSQNFSSRASQDQRVFRVGSR*SSIEGRSEIPSLDRGEAEPSKEERTENEKWWLPQPKGRAGYTI 6849
Range 10: 5973 to 6233 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 34/87(39%) | 0/87(0%) | Minus/Plus |
Query 624 CVNMFKDF*RIACVA*G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AG 884 C + K F*++AC * TN *+ WCH Y SC I RSP +G K AC+L ++ S S *S W F S V G Subject 5973 CASTLKTF*KVACAVWV*ETNM**IRSGSWCHCSYETSCLKLSSIVRSPCRSGAGKCACQLSGGKSFSRSCA*SLWDFPTSLVFWVG 6233
Range 11: 5988 to 6491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 60/168(36%) | 0/168(0%) | Plus/Minus |
Query 366 ICCSASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTLSYACDPLKVF 869 I C A KRTYN + + A++A +T ET AS LN M N H N N+ + + H S G+T V Y T P + E P L TR R+ Q T P+T S D TT V VAP+P+ NS VR+L + ACD LK F Subject 5988 IDCGARKRTYNPRSPKIAQNALNVITSPIETFASHRPLNRQMWNHHSRQNEINNATHSWLRHIAPLEKLSHGRTHVVMKTRAYRTLPHPKDERSREIPE*LSTRARKTFPAAQLTSTLPSTTSTWGPHDR*KFQTTCFVRAVAPTPRTNSLHVRFLDPNRACDFLKSF 6491
Range 12: 6594 to 6848 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 35/85(41%) | 0/85(0%) | Plus/Minus |
Query 9 MV*PAQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMP*LTFRSSRHTFRVEGE 263 MV*PA+ FG N H LSSFEGS S + E E E L T+KT R E+F ++TK TF+S++ T R E Subject 6594 MV*PARPFGWGNHHFSFSVLSSFEGSASPRSSEGISERPSIEDYRLPTRKTL*S*EAREEKF*EKTKKSCSTFQSTQRTSRAVKE 6848
Range 13: 6546 to 6848 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 44/101(44%) | 0/101(0%) | Minus/Plus |
Query 9 GVSLSSRGRFLLCWRCFSFNPKGVSTTPES*LRHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELCRSYH 311 GV SS ++ W F ++P+G +T ES* R F FFS+ L A K F SG* L * F FA* +*+*TFE RE + + V AK CR YH Subject 6546 GVCRSSHDQYHQRWHSFFYSPRGSLSTLES*ARLFCFFSKFLLACLSRSKGFSSG*PVILY*GAFGDSFA*SR*S*TFEGRED*EREMVVTPAKGPCRLYH 6848
Range 14: 6330 to 6506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 27/59(46%) | 0/59(0%) | Minus/Plus |
Query 351 IVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFAS 527 +V I+ M I H V*+ AR RF+GAC V R+ +VVSAF+RTT Y +AS Subject 6330 VVYFILTGMVIPHLPV*RAVARKRFYGACYYV*CVLRYLWATRVVSAFSRTTIYFSYAS 6506
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 14
Range 1: 5984 to 6421 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 93/146(64%) | 0/146(0%) | Minus/Plus |
Query 448 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW 885 VR+YV+ LK RMR LGL NEHVV+SF E+VPLLLR+KLS TF+ RA+ KW + CLSA+RREK FAL C+V LGFP+F R++GGV CD LLSS RR DR+ V K CDA G LFH D +GDSTS+GLKGGGSQ+FLW Subject 5984 VRKYVKNFLKSRMRGLGLRNEHVVNSFGELVPLLLRNKLSETFIYRAVPMSKWCWKVCLSAERREKFFALVCLVTLGFPYFARFLGGVVCDKLLSSLRRAYDRVIVFLKERCDAAMNGLRCLFHFDGNGDSTSAGLKGGGSQTFLW 6421
Range 2: 6464 to 6778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 69/105(66%) | 0/105(0%) | Minus/Plus |
Query 91 WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV 405 +AGCKCV+SH+++FFLCVSLVEEVN+IA+++G SF SRP+SS LA LLQPER V+YSGKL+T F F ISPRVPL +K FFEW+ S LL+ +RRFLR++AV Subject 6464 YAGCKCVFSHHDLFFLCVSLVEEVNMIAKILGCLSFFSRPISSALAFALLQPERFVEYSGKLSTTFLFFLKISPRVPLKIKGFFEWVAGSPLLRGVRRFLRLIAV 6778
Range 3: 6827 to 6862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/12(92%) | 0/12(0%) | Minus/Plus |
Query 7 YPCQRAVPVIPS 42 YP QRAVPVIPS Subject 6827 YPSQRAVPVIPS 6862
Range 4: 5983 to 6759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 139/259(54%) | 0/259(0%) | Plus/Minus |
Query 110 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFXXXXXXXXXXXXLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 886 NLR +R L HSKN GTRGEI ++N+ V NFPE ST+LSG +R++AS ++ GRE +K P AI FTSST ET +KN CE THLQPA K+SA+R R N+ RN CEPPPFKP DVESP S+ NK+ P ASH + T RS RR +D+ LSH TPP R K G P T H AK+FS RSAD+ HHF AR V DNL R+SSGT S E TTCS L PK RMR FK TY RT Subject 5983 NLRTPLNRGLPATHSKNPLILRGTRGEILRKNKKVVLNFPEYSTNLSGCKRANASADDIGREKNDKHPRIFAIMFTSSTKETHKKNRSWCEKTHLQPA*PKDSAKRTKRNNKPHRNVCEPPPFKPADVESPFPSK*NKQRNPFMAASHRSFRKTITRSYARRNEDKSLSHTTPPKKRAK*GNPRVTKHTSAKNFSRRSADKHTFQHHFDMGTAR*MKVSDNLFRKSSGTNSPNEFTTCSFLRPKPRMRLFKKFLTYLRT 6759
Range 5: 6829 to 6864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/12(75%) | 0/12(0%) | Plus/Minus |
Query 5 VDGMTGTALWHG 40 +DG+TGTALW G Subject 6829 LDGITGTALWLG 6864
Range 6: 5984 to 6262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Minus |
Query 607 KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P*ATHAIL*KSLNIFTH 885 ++I +P T E K+Q D E E+ +S QA F P + GDR+I + RQL+ *+ WH L +R H++FV+* HA *K N+ H Subject 5984 ELIAHYPTQKTSEVGKSQSD*AHEREKLFPPLS*QAHFPAPLRHGDRTIDESFRQLVS*EQWHQLPERIHYMFVS*TQTAHATF*KVFNVLAH 6262
Range 7: 6596 to 6859 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 37/88(42%) | 0/88(0%) | Plus/Minus |
Query 10 WYDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRS*LSGVVDTPFGLKEKQRQ 273 WY+RH LA +T ++SL SKVQ H + AK+ N R +PL+K F + +ARR+ EKK+K R+ LS V++ P GL + + Q Subject 6596 WYNRHGPLAGVTTISRSQSSLPSKVQLHRDQAKESPNAPQ*RTTGHPLEKPFDLERHARRNFEKKQKSRAQLSRVLNEPLGL*KSECQ 6859
Range 8: 6275 to 6574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 44/100(44%) | 0/100(0%) | Plus/Minus |
Query 295 DERETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSS 594 +ER+TP N RD+V+L +* DA ++ +VVR NALTT Q R+T *QAP KRLRA+ *T RC I I + M+ T +T L + +V ++S Subject 6275 EERQTP*NFRDHVHLFN*GDA*EK*IVVRENALTTRVAQR*RKTH*T**QAP*KRLRATAL*TGRCGITIPVKMK*TTQPIHGCVTSLL*KNYHTVVRTS 6574
Range 9: 6346 to 6861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 66/172(38%) | 0/172(0%) | Minus/Plus |
Query 8 FVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHTI 523 F+ * W F+I FK LA VS+ V A A L L*VR LA + I +RL+S G+ RE+ R F+ L AG S + R+V +L KV + FV +N S+R + ++VF V S + S++ S E EPSKEER+ + W L PK AG+TI Subject 6346 FISF*REW*FHICRFKGRWLANVSMGLVITFSAFCAIFGLRGL*VRFLAPRSIFLMRLLS*RGEHDRENSRVFVVLLTTNIISAGIRSFTAREVR*VLWKVEHDFFVFSQNFSSRASQDQRVFRVGGR*SSIEGRSEIPSLDRGEAEPSKEERTENEKWWLPQPKGRAGYTI 6861
Range 10: 5985 to 6245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 34/87(39%) | 0/87(0%) | Minus/Plus |
Query 624 CVNMFKDF*RIACVA*G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AG 884 C + K F*++AC * TN *+ WCH Y SC I RSP +G K AC+L ++ S S *S W F S V G Subject 5985 CASTLKTF*KVACAVWV*ETNM**IRSGSWCHCSYETSCLKLSSIVRSPCRSGAGKCACQLSGGKSFSRSCA*SLWDFPTSLVFWVG 6245
Range 11: 6000 to 6491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 58/164(35%) | 0/164(0%) | Plus/Minus |
Query 378 ASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTLSYACDPLKVF 869 A KRTYN + + A++A +T ET AS LN M N H N N+ + + H S G+T V Y T P N E P L TR R+ Q T +T S D TT V VAP+P+ NS VR+L + ACD LK F Subject 6000 ARKRTYNPRSPKIAQNALNVITSPIETFASHRPLNRQMWNHHSRQNEINNATHSWLRHIAPLEKLSHGRTHVVMKTRAYRTLPHPKNERSREIPE*LSTRARKTFPAAQLTSTLSSTTSTWGPHDR*KFQTTCFVRAVAPTPRTNSLHVRFLDPNRACDFLKSF 6491
Range 12: 6606 to 6860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 34/85(40%) | 0/85(0%) | Plus/Minus |
Query 9 MV*PAQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMP*LTFRSSRHTFRVEGE 263 MV*PA+ FG N H LSSFEGS S + E E E T+KT R E+F ++TK TF+S++ T R E Subject 6606 MV*PARPFGWGNHHFSFSVLSSFEGSASPRSSEGISERPSIEDYRPPTRKTL*S*EAREEKF*EKTKKSCSTFQSTQRTSRAVKE 6860
Range 13: 6558 to 6860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 42/101(42%) | 0/101(0%) | Minus/Plus |
Query 9 GVSLSSRGRFLLCWRCFSFNPKGVSTTPES*LRHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELCRSYH 311 GV SS ++ W ++P+G +T ES* R F FFS+ L A K F SG L * F FA* +*+*TFE RE + + V AK CR YH Subject 6558 GVCRSSHDQYHQRWHSLFYSPRGSLSTLES*ARLFCFFSKFLLACLSRSKGFSSGWPVVLY*GAFGDSFA*SR*S*TFEGRED*EREMVVTPAKGPCRLYH 6860
Range 14: 6342 to 6518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 27/59(46%) | 0/59(0%) | Minus/Plus |
Query 351 IVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFAS 527 +V I+ M I H V*+ AR RF+GAC V R+ +VVSAF+RTT Y +AS Subject 6342 VVYFILTGMVIPHLPV*RAVARKRFYGACYYV*CVLRYLWATRVVSAFSRTTIYFSYAS 6518
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 14
Range 1: 5984 to 6421 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 93/146(64%) | 0/146(0%) | Minus/Plus |
Query 448 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW 885 VR+YV+ LK RMR LGL NEHVV+SF E+VPLLLR+KLS TF+ RA+ KW + CLSA+RREK FAL C+V LGFP+F R++GGV CD LLSS RR DR+ V K CDA G LFH D +GDSTS+GLKGGGSQ+FLW Subject 5984 VRKYVKNFLKSRMRGLGLRNEHVVNSFGELVPLLLRNKLSETFIYRAVPMSKWCWKVCLSAERREKFFALVCLVTLGFPYFARFLGGVVCDKLLSSLRRAYDRVIVFLKERCDAAMNGLRCLFHFDGNGDSTSAGLKGGGSQTFLW 6421
Range 2: 6464 to 6778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 69/105(66%) | 0/105(0%) | Minus/Plus |
Query 91 WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLRVVAV 405 +AGCKCV+SH+++FFLCVSLVEEVN+IA+++G SF SRP+SS LA LLQPER V+YSGKL+T F F ISPRVPL +K FFEW+ S LL+ +RRFLR++AV Subject 6464 YAGCKCVFSHHDLFFLCVSLVEEVNMIAKILGCLSFFSRPISSALAFALLQPERFVEYSGKLSTTFLFFLKISPRVPLKIKGFFEWVAGSPLLRGVRRFLRLIAV 6778
Range 3: 6827 to 6862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/12(92%) | 0/12(0%) | Minus/Plus |
Query 7 YPCQRAVPVIPS 42 YP QRAVPVIPS Subject 6827 YPSQRAVPVIPS 6862
Range 4: 5983 to 6759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 139/259(54%) | 0/259(0%) | Plus/Minus |
Query 110 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNKR**PNATASHHLLKITFXXXXXXXXXXXXLSHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 886 NLR +R L HSKN GTRGEI ++N+ V NFPE ST+LSG +R++AS ++ GRE +K P AI FTSST ET +KN CE THLQPA K+SA+R R N+ RN CEPPPFKP DVESP S+ NK+ P ASH + T RS RR +D+ LSH TPP R K G P T H AK+FS RSAD+ HHF AR V DNL R+SSGT S E TTCS L PK RMR FK TY RT Subject 5983 NLRTPLNRGLPATHSKNPLILRGTRGEILRKNKKVVLNFPEYSTNLSGCKRANASADDIGREKNDKHPRIFAIMFTSSTKETHKKNRSWCEKTHLQPA*PKDSAKRTKRNNKPHRNVCEPPPFKPADVESPFPSK*NKQRNPFMAASHRSFRKTITRSYARRNEDKSLSHTTPPKKRAK*GNPRVTKHTSAKNFSRRSADKHTFQHHFDMGTAR*MKVSDNLFRKSSGTNSPNEFTTCSFLRPKPRMRLFKKFLTYLRT 6759
Range 5: 6829 to 6864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/12(75%) | 0/12(0%) | Plus/Minus |
Query 5 VDGMTGTALWHG 40 +DG+TGTALW G Subject 6829 LDGITGTALWLG 6864
Range 6: 5984 to 6262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Minus |
Query 607 KIITRHPAYITYEKRKAQHDYTRESEEFLSSISRQASFRPPFQ*GDRSIQKRPRQLIP*K*WHHLRKRTHHVFVT*P*ATHAIL*KSLNIFTH 885 ++I +P T E K+Q D E E+ +S QA F P + GDR+I + RQL+ *+ WH L +R H++FV+* HA *K N+ H Subject 5984 ELIAHYPTQKTSEVGKSQSD*AHEREKLFPPLS*QAHFPAPLRHGDRTIDESFRQLVS*EQWHQLPERIHYMFVS*TQTAHATF*KVFNVLAH 6262
Range 7: 6596 to 6859 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 37/88(42%) | 0/88(0%) | Plus/Minus |
Query 10 WYDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRS*LSGVVDTPFGLKEKQRQ 273 WY+RH LA +T ++SL SKVQ H + AK+ N R +PL+K F + +ARR+ EKK+K R+ LS V++ P GL + + Q Subject 6596 WYNRHGPLAGVTTISRSQSSLPSKVQLHRDQAKESPNAPQ*RTTGHPLEKPFDLERHARRNFEKKQKSRAQLSRVLNEPLGL*KSECQ 6859
Range 8: 6275 to 6574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 44/100(44%) | 0/100(0%) | Plus/Minus |
Query 295 DERETPDNSRDNVYLLD**DAKKEYVVVRVNALTTCPTQGKRETRHAH*QAPKKRLRASTF*TTRCRIAILITMEQTMIAERNSITPPLKDHLQSVRQSS 594 +ER+TP N RD+V+L +* DA ++ +VVR NALTT Q R+T *QAP KRLRA+ *T RC I I + M+ T +T L + +V ++S Subject 6275 EERQTP*NFRDHVHLFN*GDA*EK*IVVRENALTTRVAQR*RKTH*T**QAP*KRLRATAL*TGRCGITIPVKMK*TTQPIHGCVTSLL*KNYHTVVRTS 6574
Range 9: 6346 to 6861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 66/172(38%) | 0/172(0%) | Minus/Plus |
Query 8 FVPL**GWRFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEERSRGKGWGLSVPKSCAGHTI 523 F+ * W F+I FK LA VS+ V A A L L*VR LA + I +RL+S G+ RE+ R F+ L AG S + R+V +L KV + FV +N S+R + ++VF V S + S++ S E EPSKEER+ + W L PK AG+TI Subject 6346 FISF*REW*FHICRFKGRWLANVSMGLVITFSAFCAIFGLRGL*VRFLAPRSIFLMRLLS*RGEHDRENSRVFVVLLTTNIISAGIRSFTAREVR*VLWKVEHDFFVFSQNFSSRASQDQRVFRVGGR*SSIEGRSEIPSLDRGEAEPSKEERTENEKWWLPQPKGRAGYTI 6861
Range 10: 5985 to 6245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 34/87(39%) | 0/87(0%) | Minus/Plus |
Query 624 CVNMFKDF*RIACVA*G*VTNTW*VLLRRWCHYFYGISCRGRFWIERSPH*NGGRKLACRLIEERNSSLSRV*SCWAFRFSYVI*AG 884 C + K F*++AC * TN *+ WCH Y SC I RSP +G K AC+L ++ S S *S W F S V G Subject 5985 CASTLKTF*KVACAVWV*ETNM**IRSGSWCHCSYETSCLKLSSIVRSPCRSGAGKCACQLSGGKSFSRSCA*SLWDFPTSLVFWVG 6245
Range 11: 6000 to 6491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 58/164(35%) | 0/164(0%) | Plus/Minus |
Query 378 ASKRTYNLPNSRKARDATCALTGTKETIASLHLLNHSM*NRHPHHNGTNDDSRTQQHHTTS*RSPSIGQTIVEKMIEDYHTPPRLYNV*KTESPTRLYTRERRVSLFDQPTGKFPTTISVRRSLDPETSPTTYPVEVVAPSPQKNSPRVRYLTLSYACDPLKVF 869 A KRTYN + + A++A +T ET AS LN M N H N N+ + + H S G+T V Y T P N E P L TR R+ Q T +T S D TT V VAP+P+ NS VR+L + ACD LK F Subject 6000 ARKRTYNPRSPKIAQNALNVITSPIETFASHRPLNRQMWNHHSRQNEINNATHSWLRHIAPLEKLSHGRTHVVMKTRAYRTLPHPKNERSREIPE*LSTRARKTFPAAQLTSTLSSTTSTWGPHDR*KFQTTCFVRAVAPTPRTNSLHVRFLDPNRACDFLKSF 6491
Range 12: 6606 to 6860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 34/85(40%) | 0/85(0%) | Plus/Minus |
Query 9 MV*PAQLFGTDNPHPLPRDLSSFEGSVSLQLREETFEYSLAESCVLSTQKTFSLKVVRAERFRKETKMP*LTFRSSRHTFRVEGE 263 MV*PA+ FG N H LSSFEGS S + E E E T+KT R E+F ++TK TF+S++ T R E Subject 6606 MV*PARPFGWGNHHFSFSVLSSFEGSASPRSSEGISERPSIEDYRPPTRKTL*S*EAREEKF*EKTKKSCSTFQSTQRTSRAVKE 6860
Range 13: 6558 to 6860 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 42/101(42%) | 0/101(0%) | Minus/Plus |
Query 9 GVSLSSRGRFLLCWRCFSFNPKGVSTTPES*LRHFRFFSESLRAYHF**KSFLSG*HAALC*RVFEGFFA*LQ*N*TFERREVSGQRVGVIRAKELCRSYH 311 GV SS ++ W ++P+G +T ES* R F FFS+ L A K F SG L * F FA* +*+*TFE RE + + V AK CR YH Subject 6558 GVCRSSHDQYHQRWHSLFYSPRGSLSTLES*ARLFCFFSKFLLACLSRSKGFSSGWPVVLY*GAFGDSFA*SR*S*TFEGRED*EREMVVTPAKGPCRLYH 6860
Range 14: 6342 to 6518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 27/59(46%) | 0/59(0%) | Minus/Plus |
Query 351 IVCSIVMRMAILHRVV*KVEARNRFFGAC*CACRVSRFP*VGQVVSAFTRTTTYSFFAS 527 +V I+ M I H V*+ AR RF+GAC V R+ +VVSAF+RTT Y +AS Subject 6342 VVYFILTGMVIPHLPV*RAVARKRFYGACYYV*CVLRYLWATRVVSAFSRTTIYFSYAS 6518
Grapevine leafroll associated virus 2 methyltransferase/helicase polyprotein gene, partial cds; and RNA dependent RNA polymerase, putative transmembrane small hydrophobic protein, 65 kDa chaperone protein, 63 kDa protein, 25 kDa diverged coat protein, 22 kDa coat protein, 19 kDa protein, and 24 kDa protein genes, complete cds
Sequence ID: AF039204.1 Length: 15000 Number of Matches: 7
Range 1: 4505 to 4942 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 68/146(47%) | 0/146(0%) | Minus/Plus |
Query 448 VREYVQRLLKDRMRSLGLSNEHVVSSFAEMVPLLLRDKLSGTFLDRAISSLKWWSETCLSADRREKLFALACIVVLGFPFFIRYIGGVACDNXXXXXXXXXXXLKVIFKRWCDAVAFGYHRLFHCDEDGDSTSSGLKGGGSQSFLW 885 VREY QR L+ RMR+LGL+NE VV SFA+++P L++ K+SG+FL L+ +S C+SA+RREK FAL C++ L PFF+R +G AC+ L+SS RR +R+K+ ++ +++ + LF D D S S+GLKGG S+ L+ Subject 4505 VREYTQRFLRSRMRALGLNNEFVVKSFADLLPALMKRKVSGSFLASVYRPLRGFSYMCVSAERREKFFALVCLIGLSLPFFVRIVGAKACEELVSSARRFYERIKIFLRQKYVSLSNFFCHLFSSDVDDSSASAGLKGGASRMTLF 4942
Range 2: 4985 to 5287 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 51/101(50%) | 0/101(0%) | Minus/Plus |
Query 103 WAGCKCVYSHYNIFFLCVSLVEEVNVIARVVGGFSFISRPVSSVLALLLLQPERCVDYSGKLATAFSFLFGISPRVPLLVKKFFEWITRSSLLKSIRRFLR 405 W G K + SH+N+ FLC +LV++VNV+ +V+GG SF +P+ S+ A +LLQP+R V+YS KL TAF F SPR P L+K FFE + S++ K++RR LR Subject 4985 WEGLKLLLSHHNLLFLCFALVDDVNVLIKVLGGLSFFVQPIFSLFAAMLLQPDRFVEYSEKLVTAFEFFLKCSPRAPALLKGFFECVANSTVSKTVRRLLR 5287
Range 3: 4867 to 5280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 57/138(41%) | 0/138(0%) | Plus/Minus |
Query 110 NLRILFSRELRVIHSKNFFTKSGTRGEIPKRNENAVANFPE*STHLSG*RRSSASTEETGREMKEKPPTTLAITFTSSTNETQRKNML*CE*THLQPAQLKESARRDMRINRHQRNDCEPPPFKPLDVESPSSSQWNK 523 +LR +F L HSKN + +G RGE K+N NAV +F E ST+LSG R +A+ E+ G KE+PP TL TFTSSTN + N L C+ + P+ + R R + + PPF P D E S+S+ NK Subject 4867 SLRTVFDTVLFATHSKNPLSSAGARGEHFKKNSNAVTSFSEYSTNLSGCRSIAANKEKIGCTKKERPPRTLIRTFTSSTNAKHKNNKLWCDKSSFNPSHPNDRRALARRTRRWKSVIRDAPPFNPADAELSSTSELNK 5280
Range 4: 4504 to 4776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 38/91(42%) | 0/91(0%) | Plus/Minus |
Query 614 SHATPPI*RMKNGKPNTTIHARAKSFSLRSADRQVSDHHFSEEIARSRNVPDNLSRRSSGTISAKELTTCSLLNPKLRMRSFKSL*TYSRT 886 SHA P R K G+ N H RAK+FS RSA+ + + S ++N P+ ++G+ SAK+ TT SL P RMR ++L* YSRT Subject 4504 SHAFAPTMRTKKGRLNPIKHTRAKNFSRRSAETHIYEKPLSGR*TLAKNEPETFRFINAGSKSAKDFTTNSLFKPNARMRLRRNL*VYSRT 4776
Range 5: 4891 to 5325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 38/145(26%) | 0/145(0%) | Minus/Plus |
Query 65 RFYIEWFKRWRLAIVSLVPVNAHVASRAFLELGRL*VRLLALQHILSLRLISRGGKRYRESCRGFLFHLAAGFFCAGAASPSTRKVCRLLRKVSYGIFVSFRNLSARTTFSEKVF*VDNTQLSAKEYSKVSSRSCSETEPSKEER 499 +F I +RW +A +L P + + +GR+ L+A Q ++ + I +R +S G F A F + +T +VC + R+ Y + + + ++R +++VF*V Q K SK SS + + SK R Subject 4891 QFRICRVERWCVANDALPPSGSPC*CPPIVRVGRVKATLIAPQLVIFVFCIG*RCERPYQSSWGSFFLCATNLFLVCGDASTTGQVCGVFRETCYSV*IFLKMFASRACTTQRVF*VRGEQHCVKNRSKTSSLFREDAQTSKRAR 5325
Range 6: 4503 to 4583 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 11/27(41%) | 0/27(0%) | Minus/Plus |
Query 807 SCVNMFKDF*RIACVA*G*VTNTW*VL 887 SC ++ +D +ACV *+T++W* L Subject 4503 SCASILRDSSEVACVRWV*ITSSW*NL 4583
Range 7: 5009 to 5377 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 41/123(33%) | 0/123(0%) | Plus/Minus |
Query 13 YDRHSSLARITPTLCPETSLLSKVQFHCNYAKKPSNTL*QRAACYPLKKLFH*KWYARRDSEKKRKCRS*LSGVVDTPFGLKEKQRQHRRNRPRDERETPDNSRDNVYLLD**DAKKEYVVVR 381 YD + L TPT+ + S SK + AKK SN * A + LKK F * ARR +K K + G++ P L + +R+ ++ ER+TP N +V++++ +K VVVR Subject 5009 YDGYGFLPMETPTIRTQPSPFSKFEHLHETAKKSSNGF*HSAVRHALKKPFE*CRRARRTF*EKFKRCNKFLGILHKPVRL*KHRRKQGKDWLHKERKTPKNFDKDVHIVNQCKTQK*QVVVR 5377
Nucleotide Sequence (353 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
279.2 | 1501.3 | 48% | 1.451e-73 | 85% | DQ286725.2 | |
250.0 | 924.3 | 54% | 9.189e-65 | 52% | NC_004724.1 | |
250.0 | 931.2 | 54% | 9.189e-65 | 53% | JX513891.1 | |
250.0 | 924.3 | 54% | 9.189e-65 | 52% | AF314061.1 | |
238.1 | 665.0 | 34% | 3.396e-61 | 40% | KF220376.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 8
Range 1: 7176 to 7523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 114/116(98%) | 0/116(0%) | Minus/Minus |
Query 6 GRTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIKRRCGFHQTQSLPK 353 GRTIERPHYRGPSSDQNSQSA DHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIKRRCGFHQTQSLP+ Subject 7176 GRTIERPHYRGPSSDQNSQSAIDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIKRRCGFHQTQSLPE 7523
Range 2: 7172 to 7522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(592) | 0.0 | 116/117(99%) | 0/117(0%) | Plus/Plus |
Query 2 LVWGGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 LV GGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV Subject 7172 LVRGGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 7522
Range 3: 7176 to 7523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.4 bits(586) | 0.0 | 115/116(99%) | 0/116(0%) | Plus/Plus |
Query 6 FGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCTS 353 FGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMI+CGL*ILIARWPPVMRTLNCTS Subject 7176 FGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMINCGL*ILIARWPPVMRTLNCTS 7523
Range 4: 7175 to 7522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 116/116(100%) | 0/116(0%) | Minus/Minus |
Query 5 DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPN 352 DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPN Subject 7175 DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPN 7522
Range 5: 7270 to 7521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
180.7 bits(388) | 0.0 | 84/84(100%) | 0/84(0%) | Minus/Minus |
Query 100 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 351 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE Subject 7270 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 7521
Range 6: 7171 to 7209 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 11/13(85%) | 0/13(0%) | Minus/Minus |
Query 1 VRISSDTVPPQTR 39 VRISSDTVPP+T+ Subject 7171 VRISSDTVPPRTK 7209
Range 7: 7282 to 7521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.8 bits(373) | 0.0 | 79/80(99%) | 0/80(0%) | Plus/Plus |
Query 112 GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*SVADCEF*SLDGPL**GRSIVR 351 GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*S+ADCEF*SLDGPL**GRSIVR Subject 7282 GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*SIADCEF*SLDGPL**GRSIVR 7521
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 6
Range 1: 7157 to 7507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.0 bits(542) | 0.0 | 105/117(90%) | 0/117(0%) | Plus/Plus |
Query 2 LVWGGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 LV GTVSDE T+ LSDDEA+EE+ ++EERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNF+RSMAPCNEDAQLYV Subject 7157 LVRKGTVSDEEITNTLSDDEAIEEVPVSEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFERSMAPCNEDAQLYV 7507
Range 2: 7255 to 7506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 76/84(90%) | 0/84(0%) | Minus/Minus |
Query 100 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 351 TYN*ASSL GAIERSKFTIRN*S**A SLLWIS RA+SC+**NSRTALV PPVSLLSSTTIG GNSKLEF+LFKYSLTLTVLGE Subject 7255 TYN*ASSLHGAIERSKFTIRN*S**AHSLLWISNRASSCI**NSRTALVNPPVSLLSSTTIGFGNSKLEFNLFKYSLTLTVLGE 7506
Range 3: 7157 to 7507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 67/117(57%) | 0/117(0%) | Minus/Minus |
Query 2 DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPNQ 352 +VQLS+LIT GHR +IH+PQLI+VSA+FA+D + S+ LH+++F +RVG SSLLIV+HH+R R+FE V SIQ+ HP+R *+++LFGD F+RFI+R*SVG I +SP NQ Subject 7157 NVQLSILITWGHRTFEIHDPQLIVVSAQFAVDFK*SELLHIVEFAYRVG*PSSLLIVVHHDRLREFEA*VQSIQIFTHPYRFG*VVALFGDWNFFNRFIIR*SVGDFLIGNSPLTNQ 7507
Range 4: 7158 to 7505 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 67/116(58%) | 0/116(0%) | Plus/Plus |
Query 3 WFGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCT 350 WF GL M+ +PTLYL MKR K F+SPKS H +R*G* + *ID*T+ SN +R WW TIRRLE *PTR N C++ L +S AN ALT ISCG *I WP VMR L+CT Subject 7158 WFVRGLFPMRKSPTLYLMMKRLKKFQSPKSATTHPKR*G*VNI*ID*TQASNSRSRSWWTTIRRLEG*PTRYANSTICRSSLYLKSTANCALTTISCGS*ISNVLWPHVMRMLSCT 7505
Range 5: 7200 to 7505 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 53/102(52%) | 0/102(0%) | Minus/Minus |
Query 45 RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIK 350 RT E PHY GP + +NS+SATD SKR VC G + E A ++I PRW LQSPYC PP+S IR+ S +YS+ SP P V+ ALR + L+ LH QIK Subject 7200 RTTEHPHYMGP*NVRNSRSATDRSKRTVCCGFQIERAPAYSRIRVPRWLTLQSPYCRPPRSASGIRSLSSIYSNIHSPLPFWVSRRALRRLELLQSLHHQIK 7505
Range 6: 7267 to 7506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 45/80(56%) | 0/80(0%) | Plus/Plus |
Query 112 GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*SVADCEF*SLDGPL**GRSIVR 351 G+GE + E* +L+ RI D GG Q*GDWR +QRG ILL+A S+ +P QT+RLL SVAD EF + GP+**G S+VR Subject 7267 GKGE*IFE*IELKLRIPEADRGGRQ*GDWRVNQRGTRILLYAGARSI*NPQQTVRLLRSVADREFRTFYGPM**GCSVVR 7506
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 6
Range 1: 7145 to 7495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.0 bits(542) | 0.0 | 105/117(90%) | 0/117(0%) | Plus/Plus |
Query 2 LVWGGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 LV GTVSDE T+ LSDDEA+EE+ ++EERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNF+RSMAPCNEDAQLYV Subject 7145 LVRKGTVSDEEITNTLSDDEAIEEVPVSEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFERSMAPCNEDAQLYV 7495
Range 2: 7243 to 7494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 76/84(90%) | 0/84(0%) | Minus/Minus |
Query 100 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 351 TYN*ASSL GAIERSKFTIRN*S**A SLLWIS RA+SC+**NSRTALV PPVSLLSSTTIG GNSKLEF+LFKYSLTLTVLGE Subject 7243 TYN*ASSLHGAIERSKFTIRN*S**AHSLLWISNRASSCI**NSRTALVNPPVSLLSSTTIGFGNSKLEFNLFKYSLTLTVLGE 7494
Range 3: 7145 to 7495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 68/117(58%) | 0/117(0%) | Minus/Minus |
Query 2 DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPNQ 352 +VQLS+LIT GHRA +IH+PQLI+VSA+FA+D + S+ LH+++F +RVG SSLLIV+HH+R R+FE V SIQ+ HP+R *+++LFGD F+RFI+R*SVG I +SP NQ Subject 7145 NVQLSILITWGHRAFEIHDPQLIVVSAQFAVDFK*SELLHIVEFAYRVG*PSSLLIVVHHDRLREFEA*VQSIQIFTHPYRFG*VVALFGDWNFFNRFIIR*SVGDFLIGNSPLTNQ 7495
Range 4: 7146 to 7493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 68/116(59%) | 0/116(0%) | Plus/Plus |
Query 3 WFGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCT 350 WF GL M+ +PTLYL MKR K F+SPKS H +R*G* + *ID*T+ SN +R WW TIRRLE *PTR N C++ L +S AN ALT ISCG *I A WP VMR L+CT Subject 7146 WFVRGLFPMRKSPTLYLMMKRLKKFQSPKSATTHPKR*G*VNI*ID*TQASNSRSRSWWTTIRRLEG*PTRYANSTICRSSLYLKSTANCALTTISCGS*ISNALWPHVMRMLSCT 7493
Range 5: 7188 to 7493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 54/102(53%) | 0/102(0%) | Minus/Minus |
Query 45 RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIK 350 RT E PHY GP S +NS+SATD SKR VC G + E A ++I PRW LQSPYC PP+S IR+ S +YS+ SP P V+ ALR + L+ LH QIK Subject 7188 RTTEHPHYMGP*SVRNSRSATDRSKRTVCCGFQIERAPAYSRIRVPRWLTLQSPYCRPPRSASGIRSLSSIYSNIHSPLPFWVSRRALRRLELLQSLHHQIK 7493
Range 6: 7255 to 7494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 46/80(57%) | 0/80(0%) | Plus/Plus |
Query 112 GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*SVADCEF*SLDGPL**GRSIVR 351 G+GE + E* +L+ RI D GG Q*GDWR +QRG ILL+A S+ +P QT+RLL SVAD EF +L GP+**G S+VR Subject 7255 GKGE*IFE*IELKLRIPEADRGGRQ*GDWRVNQRGTRILLYAGARSI*NPQQTVRLLRSVADREFRTLYGPM**GCSVVR 7494
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 6
Range 1: 7157 to 7507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.0 bits(542) | 0.0 | 105/117(90%) | 0/117(0%) | Plus/Plus |
Query 2 LVWGGTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 LV GTVSDE T+ LSDDEA+EE+ ++EERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNF+RSMAPCNEDAQLYV Subject 7157 LVRKGTVSDEEITNTLSDDEAIEEVPVSEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFERSMAPCNEDAQLYV 7507
Range 2: 7255 to 7506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 76/84(90%) | 0/84(0%) | Minus/Minus |
Query 100 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 351 TYN*ASSL GAIERSKFTIRN*S**A SLLWIS RA+SC+**NSRTALV PPVSLLSSTTIG GNSKLEF+LFKYSLTLTVLGE Subject 7255 TYN*ASSLHGAIERSKFTIRN*S**AHSLLWISNRASSCI**NSRTALVNPPVSLLSSTTIGFGNSKLEFNLFKYSLTLTVLGE 7506
Range 3: 7157 to 7507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 67/117(57%) | 0/117(0%) | Minus/Minus |
Query 2 DVQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR*SVGADFIRHSPSPNQ 352 +VQLS+LIT GHR +IH+PQLI+VSA+FA+D + S+ LH+++F +RVG SSLLIV+HH+R R+FE V SIQ+ HP+R *+++LFGD F+RFI+R*SVG I +SP NQ Subject 7157 NVQLSILITWGHRTFEIHDPQLIVVSAQFAVDFK*SELLHIVEFAYRVG*PSSLLIVVHHDRLREFEA*VQSIQIFTHPYRFG*VVALFGDWNFFNRFIIR*SVGDFLIGNSPLTNQ 7507
Range 4: 7158 to 7505 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 67/116(58%) | 0/116(0%) | Plus/Plus |
Query 3 WFGEGLCLMKSAPTLYLTMKRSKSFRSPKSEMIHLRR*G*AST*ID*TRVSNFLNRLWWMTIRRLEV*PTRCVNFITCKNWLSSRSIANFALTMISCGL*ILIARWPPVMRTLNCT 350 WF GL M+ +PTLYL MKR K F+SPKS H +R*G* + *ID*T+ SN +R WW TIRRLE *PTR N C++ L +S AN ALT ISCG *I WP VMR L+CT Subject 7158 WFVRGLFPMRKSPTLYLMMKRLKKFQSPKSATTHPKR*G*VNI*ID*TQASNSRSRSWWTTIRRLEG*PTRYANSTICRSSLYLKSTANCALTTISCGS*ISNVLWPHVMRMLSCT 7505
Range 5: 7200 to 7505 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 53/102(52%) | 0/102(0%) | Minus/Minus |
Query 45 RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIK 350 RT E PHY GP + +NS+SATD SKR VC G + E A ++I PRW LQSPYC PP+S IR+ S +YS+ SP P V+ ALR + L+ LH QIK Subject 7200 RTTEHPHYMGP*NVRNSRSATDRSKRTVCCGFQIERAPAYSRIRVPRWLTLQSPYCRPPRSASGIRSLSSIYSNIHSPLPFWVSRRALRRLELLQSLHHQIK 7505
Range 6: 7267 to 7506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 45/80(56%) | 0/80(0%) | Plus/Plus |
Query 112 GEGERVLE*TKLEFRIS*TDCGG*Q*GDWRFDQRGA*ILLHARIGSLRDP*QTLRLL*SVADCEF*SLDGPL**GRSIVR 351 G+GE + E* +L+ RI D GG Q*GDWR +QRG ILL+A S+ +P QT+RLL SVAD EF + GP+**G S+VR Subject 7267 GKGE*IFE*IELKLRIPEADRGGRQ*GDWRVNQRGTRILLYAGARSI*NPQQTVRLLRSVADREFRTFYGPM**GCSVVR 7506
Grapevine leafroll associated virus 2 isolate GLRaV 2 SG, complete genome
Sequence ID: KF220376.1 Length: 16474 Number of Matches: 6
Range 1: 7181 to 7519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.1 bits(516) | 0.0 | 98/113(87%) | 0/113(0%) | Plus/Plus |
Query 14 GTVSDEIRTDALSDDEAVEELSITEERDDSPKTVRVSEYLNRLNSSFEFPKPIVVDDNKETGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCNEDAQLYV 352 GT + + ALSDDEAVEE+S+ +ERDDSPKTVR+SEYLNRLNSSFEFPKPIVVDDNK+TGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPC+EDAQLYV Subject 7181 GTTTSDDAVVALSDDEAVEEISVADERDDSPKTVRMSEYLNRLNSSFEFPKPIVVDDNKDTGGLTNAVREFYYMQELALFEIHSKLCAYYDQLRIVNFDRSMAPCSEDAQLYV 7519
Range 2: 7267 to 7518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 70/84(83%) | 0/84(0%) | Minus/Minus |
Query 100 TYN*ASSLQGAIERSKFTIRN*S**AQSLLWISKRANSCM**NSRTALVKPPVSLLSSTTIGLGNSKLEFSLFKYSLTLTVLGE 351 TY+*ASSL GAI+RSKFT+R+ S**AQSLL ISKRA+SC+**NS TA VKPPVSLLSSTTIG GNSKLEF+LFKYSL LTVLGE Subject 7267 TYS*ASSLHGAIDRSKFTMRSWS**AQSLL*ISKRASSCI**NSLTAFVKPPVSLLSSTTIGFGNSKLEFNLFKYSLILTVLGE 7518
Range 3: 7217 to 7516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 51/100(51%) | 0/100(0%) | Minus/Minus |
Query 50 VQLSVLITGGHRAIKIHNPQLIIVSAKFAMDLEESQFLHVIKFTHRVGQTSSLLIVIHHNRFRKFETRV*SIQVLAHPHRLR*IISLFGDRKLFDRFIVR 349 VQLS+ HR+IKIH QL++V + M+ E+S+FLH++KF H + + IV+H +R R+ E V*SIQVLAHP RLR I+SL D FD FIVR Subject 7217 VQLSIFAARRHRSIKIHYAQLVVVGTELTMNFEKSKFLHIVKFPHGIR*APGVFIVVHDDRLRELEA*V*SIQVLAHPDRLRRIVSLISDGDFFDSFIVR 7516
Range 4: 7209 to 7517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 41/103(40%) | 0/103(0%) | Minus/Minus |
Query 42 RTIERPHYRGPSSDQNSQSATDHSKRKVCYGSRREPILACNKIHAPRWSNLQSPYCHPPQSV*EIRNSSLVYSSTRSPSPS*VNHLALR*SKALRPLHRQIKR 350 RT E P DQNS A S+ + Y R+E + A +KI + + + YC P + R+ SL+YSSTRS PS* N LA + + LR LHRQ +R Subject 7209 RTAEHLRCTAP*IDQNSLCAAGRSRHRAYYEFRKEQVPAYSKIPSRHSLSPRCLYCRPRR*ASGTRSLSLIYSSTRSS*PS*ANRLAHQRRRFLRQLHRQTER 7517
Nucleotide Sequence (613 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
427.2 | 2526.1 | 29% | 3.607e-122 | 89% | DQ286725.2 | |
427.2 | 2499.0 | 29% | 9.508e-118 | 89% | AY456132.1 | |
391.5 | 1386.5 | 26% | 5.458e-107 | 46% | EF012720.1 | |
386.4 | 1369.3 | 21% | 1.796e-105 | 38% | NC_004724.1 | |
386.4 | 1369.3 | 21% | 1.796e-105 | 38% | AF314061.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 12
Range 1: 11394 to 11825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.4 bits(741) | 0.0 | 141/144(98%) | 0/144(0%) | Minus/Minus |
Query 1 IEA*YPRTEWELRPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPLRK 432 IE *YPRTEWEL+PERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPL K Subject 11394 IEV*YPRTEWELQPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPLLK 11825
Range 2: 11852 to 11995 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 46/48(96%) | 0/48(0%) | Minus/Minus |
Query 459 DRNIQIEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM 602 DRNIQIEGDRRVRDA HANVAEFYVRPTDFSVFGTFYIFTFEHCNLT+ Subject 11852 DRNIQIEGDRRVRDARHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTL 11995
Range 3: 11979 to 12005 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 8/9(89%) | 0/9(0%) | Minus/Minus |
Query 586 PQ*RSKHPD 612 P *RSKHPD Subject 11979 PH*RSKHPD 12005
Range 4: 11395 to 11994 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
427.2 bits(926) | 0.0 | 196/200(98%) | 0/200(0%) | Minus/Minus |
Query 2 IETSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRIXXXXXXXXXXXSAPSK 601 IETSR*KVIGAYEML+TPMSQNFMFDPQIFLFLGHFIYSPSNTA *RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRILLFTLTSS LSSAP K Subject 11395 IETSR*KVIGAYEMLVTPMSQNFMFDPQIFLFLGHFIYSPSNTAI*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRILLFTLTSSFLSSAPFK 11994
Range 5: 11399 to 12001 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
425.8 bits(923) | 0.0 | 194/201(97%) | 0/201(0%) | Plus/Plus |
Query 6 EGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 +GADDK+EDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCALYSSCLSGSQGLLLIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNS RQ+AVFEGEYIKCPKNRKICGSNIKFCDIGV SISYAPITFYLDVSI++ Subject 11399 KGADDKKEDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCALYSSCLSGSQGLLLIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSQRQIAVFEGEYIKCPKNRKICGSNIKFCDIGVTSISYAPITFYLDVSISS 12001
Range 6: 11395 to 11817 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 139/141(99%) | 0/141(0%) | Plus/Plus |
Query 2 FRRG***KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLGYY 424 F+RG***KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSG SSHSVLGYY Subject 11395 FKRG***KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGWSSHSVLGYY 11817
Range 7: 11869 to 11994 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 42/42(100%) | 0/42(0%) | Plus/Plus |
Query 476 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLLSGCFD 601 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLLSGCFD Subject 11869 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLLSGCFD 11994
Range 8: 11399 to 11812 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.5 bits(680) | 0.0 | 136/138(99%) | 0/138(0%) | Minus/Minus |
Query 6 TRERNGSSGRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILPFIISPF 419 TRERNGSS RSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNIL FIISPF Subject 11399 TRERNGSSSRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILLFIISPF 11812
Range 9: 11862 to 11930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 23/23(100%) | 0/23(0%) | Minus/Minus |
Query 469 ILCSTHRFFCFWDILYIHLRTLQ 537 ILCSTHRFFCFWDILYIHLRTLQ Subject 11862 ILCSTHRFFCFWDILYIHLRTLQ 11930
Range 10: 11400 to 11735 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.5 bits(536) | 0.0 | 111/112(99%) | 0/112(0%) | Plus/Plus |
Query 7 KGLMIKGRMLG*IKVFLRQLCSLT*IEL*KS*NLL*SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL 342 KGLMIK RMLG*IKVFLRQLCSLT*IEL*KS*NLL*SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL Subject 11400 KGLMIKRRMLG*IKVFLRQLCSLT*IEL*KS*NLL*SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL 11735
Range 11: 11856 to 12002 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 47/49(96%) | 0/49(0%) | Plus/Plus |
Query 463 VKLQCSKVNI*NVPKTEKSVGRT*NSATLA**ASRTRLSPSIWMFRSLL 609 VKLQCSKVNI*NVPKTEKSVGRT*NSATLA* ASRTRLSPSIWMFRSL+ Subject 11856 VKLQCSKVNI*NVPKTEKSVGRT*NSATLA*RASRTRLSPSIWMFRSLV 12002
Grapevine leafroll associated virus 2 strain Alfie membrane associated protein P6 (P6) and Hsp70 like protein genes, complete cds
Sequence ID: AY456132.1 Length: 2466 Number of Matches: 12
Range 1: 1226 to 1828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
427.2 bits(926) | 0.0 | 195/201(97%) | 0/201(0%) | Plus/Plus |
Query 6 EGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 +GADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCALYSSCLSGSQGLLLIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNS RQ+AVFEGEYIKCPKNRKICGSNIKFCDIGV SISYAPITFYLDVSI++ Subject 1226 KGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCALYSSCLSGSQGLLLIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSQRQIAVFEGEYIKCPKNRKICGSNIKFCDIGVTSISYAPITFYLDVSISS 1828
Range 2: 1222 to 1821 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
425.4 bits(922) | 0.0 | 196/200(98%) | 0/200(0%) | Minus/Minus |
Query 2 IETSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRIXXXXXXXXXXXSAPSK 601 IETSR*KVIGAYEML+TPMSQNFMFDPQIFLFLGHFIYSPSNTA *RCEFLLALAKYRGVVPENG+GAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRILLFTLTSSLLSSAP K Subject 1222 IETSR*KVIGAYEMLVTPMSQNFMFDPQIFLFLGHFIYSPSNTAI*RCEFLLALAKYRGVVPENGIGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRILLFTLTSSLLSSAPFK 1821
Range 3: 1806 to 1832 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 8/9(89%) | 0/9(0%) | Minus/Minus |
Query 586 PQ*RSKHPD 612 P *RSKHPD Subject 1806 PH*RSKHPD 1832
Range 4: 1221 to 1652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.5 bits(715) | 0.0 | 139/144(97%) | 0/144(0%) | Minus/Minus |
Query 1 IEA*YPRTEWELRPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPLRK 432 IE *YPRTE ELRPERK*SGDSSCPLSRYCELRNRSVT PVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYF SP*HPPFYHQPL K Subject 1221 IEV*YPRTE*ELRPERK*SGDSSCPLSRYCELRNRSVTIPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFCSP*HPPFYHQPLLK 1652
Range 5: 1679 to 1822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.2 bits(245) | 0.0 | 45/48(94%) | 0/48(0%) | Minus/Minus |
Query 459 DRNIQIEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM 602 DRNIQIEGDRRVRDA HANVAEFYVRPTDFSVFGTFYIFT EHCNLT+ Subject 1679 DRNIQIEGDRRVRDARHANVAEFYVRPTDFSVFGTFYIFTLEHCNLTL 1822
Range 6: 1222 to 1644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.5 bits(704) | 0.0 | 137/141(97%) | 0/141(0%) | Plus/Plus |
Query 2 FRRG***KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLGYY 424 F+RG***KGGC*GE KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTG+VTDRLRSSQYLDSGHELSPDHLRSGRSS+SVLGYY Subject 1222 FKRG***KGGC*GEQKYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGIVTDRLRSSQYLDSGHELSPDHLRSGRSSYSVLGYY 1644
Range 7: 1696 to 1821 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 41/42(98%) | 0/42(0%) | Plus/Plus |
Query 476 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLLSGCFD 601 VR *IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLLSGCFD Subject 1696 VRG*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLLSGCFD 1821
Range 8: 1226 to 1639 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.0 bits(679) | 0.0 | 135/138(98%) | 0/138(0%) | Minus/Minus |
Query 6 TRERNGSSGRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILPFIISPF 419 TRERN SSGRSANDLVTAHVRYRDTVSCAIDQ*Q L*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTF+HPNILPFIISPF Subject 1226 TRERNRSSGRSANDLVTAHVRYRDTVSCAIDQ*QSL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFVHPNILPFIISPF 1639
Range 9: 1689 to 1757 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 22/23(96%) | 0/23(0%) | Minus/Minus |
Query 469 ILCSTHRFFCFWDILYIHLRTLQ 537 ILCSTHRFFCFWDILYIH RTLQ Subject 1689 ILCSTHRFFCFWDILYIHPRTLQ 1757
Range 10: 1227 to 1562 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
246.7 bits(532) | 0.0 | 110/112(98%) | 0/112(0%) | Plus/Plus |
Query 7 KGLMIKGRMLG*IKVFLRQLCSLT*IEL*KS*NLL*SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL 342 KGLMIKGRMLG* KVFLRQLCSLT*IEL*KS*NLL*SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHR CY*SIAQL Subject 1227 KGLMIKGRMLG*TKVFLRQLCSLT*IEL*KS*NLL*SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRDCY*SIAQL 1562
Range 11: 1683 to 1829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 46/49(94%) | 0/49(0%) | Plus/Plus |
Query 463 VKLQCSKVNI*NVPKTEKSVGRT*NSATLA**ASRTRLSPSIWMFRSLL 609 VKLQCS+VNI*NVPKTEKSVGRT*NSATLA* ASRTRLSPSIWMFRSL+ Subject 1683 VKLQCSRVNI*NVPKTEKSVGRT*NSATLA*RASRTRLSPSIWMFRSLV 1829
Grapevine leafroll associated virus 2 isolate PG11 heat shock protein 70, heat shock protein 90, minor coat protein, major coat protein, and P19 genes, complete cds
Sequence ID: EF012720.1 Length: 5148 Number of Matches: 12
Range 1: 835 to 1437 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
391.5 bits(848) | 0.0 | 175/201(87%) | 0/201(0%) | Plus/Plus |
Query 6 EGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 +G DDKREDVRVNK ILT VMLPYVNRTL ILE+TLKSYAKNMGG+RNVKCDLVLIGGSSYLPGLEDILSKHR++DR+LKV+DPRAAVAVGCALYSSCLSGSQGLLL+DCAAH+I+IA MSC QIICAPAGAPIPFSGTTPLYLARAN+NS RQVAVFEGEY+KCPKNRKICGSNIKF DIGV S+SY+PITFYLDV I++ Subject 835 KGLDDKREDVRVNKEILTTVMLPYVNRTLNILEATLKSYAKNMGGLRNVKCDLVLIGGSSYLPGLEDILSKHRRIDRVLKVADPRAAVAVGCALYSSCLSGSQGLLLVDCAAHTIAIAGMSCDQIICAPAGAPIPFSGTTPLYLARANRNSQRQVAVFEGEYVKCPKNRKICGSNIKFFDIGVTSVSYSPITFYLDVGISS 1437
Range 2: 879 to 1424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.5 bits(715) | 0.0 | 139/182(76%) | 0/182(0%) | Minus/Minus |
Query 50 TSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRI 595 TS+*KV+G YE L+TP+S+NF+F+PQIFLFLGHF YSPSNTAT*RCEFLLALAKY+GVVPENGMGAPAGAQ+IW QL+ AI I+*AAQS S++PCEPERHDE SAQPTATAARGS TFS RS RCFD++SS+PGR E+PPI TKSHLTLR PP+F AYD V SK+F+VL T GS+T VRI Subject 879 TSK*KVMGEYETLVTPISKNFIFEPQIFLFLGHFTYSPSNTAT*RCEFLLALAKYKGVVPENGMGAPAGAQIIWSQLIPAIAIV*AAQSTSSSPCEPERHDE*SAQPTATAARGSATFSTRSIRRCFDKISSKPGRYEEPPIKTKSHLTLRNPPIFLAYDLSVASKMFKVLLTYGSMTVVRI 1424
Range 3: 1015 to 1248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 47/78(60%) | 0/78(0%) | Minus/Minus |
Query 186 TRERNGSSGRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKI 419 TRER+GSS S N+LVTAH Y D++S AI Q* PL*TREAR V+ T+R+C S VG+F YSIN S+ R D+ QT K+ Subject 1015 TRERDGSSRWSTNNLVTAHTGYSDSMSRAIYQ**PL*TREARRVKCATNRNCRSWVGDFQYSINPSMLR*DIFQTRKV 1248
Range 4: 1288 to 1416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 23/43(53%) | 0/43(0%) | Minus/Minus |
Query 459 IEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM 587 IE D VRDA + ++ +FY+ TDF VFGTF++ TFE+ NLT+ Subject 1288 IESDG*VRDARNTDIKKFYI*TTDFPVFGTFHVLTFEYSNLTL 1416
Range 5: 835 to 990 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 25/52(48%) | 0/52(0%) | Minus/Minus |
Query 6 IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILPFIISPF 161 + NIA H+ VR F D SSI+V EH+C +N IH N+LPFII F Subject 835 VTFNIA*SAHILGVRFKCGFQDVQSSINVWEHDCGENFLIHSNVLPFIIESF 990
Range 6: 834 to 1250 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 64/139(46%) | 0/139(0%) | Plus/Plus |
Query 5 RRG***KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLGY 421 +R **KGG * E* S+ S+AP+R *N ++L + +VR+++G QC*+ + + S G + +E T *S+T+S RP+S S G L +L+VPLGFT T RLR S Y S +EL PD+L S SSH VLGY Subject 834 KRTR**KGGR*SE*GNSHHSHAPIR**NFEHLGSHT*IVRQEYGRITQC*M*LGFNRWFLIPSGFGRYLIEASTD*SSTESRRPTSGSCGWLRTLLVVPLGFTRATTGRLRGSYYRYSRYEL*PDYLCSSGSSHPVLGY 1250
Range 7: 1305 to 1424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 19/40(48%) | 0/40(0%) | Plus/Plus |
Query 476 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLLSGC 595 +RR*+ +MSQKQ+NLW ++KI + E LV +H L C Subject 1305 IRR*VREMSQKQENLWFKYKIF*YRCYERLVLTHHFLFRC 1424
Range 8: 836 to 1249 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 66/138(48%) | 0/138(0%) | Minus/Minus |
Query 7 YPRTEWELRPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPL 420 YPRT WEL E K*SG SS L R E RN V VNPRGT S N+P+L L GR+L V DQ V S P+ E + + + *HC P RT + R +FY R GA*L *E+ YS * PPFYH+ L Subject 836 YPRTGWELPLEHK*SGHSSYRL*R*YEPRNLPVVALVNPRGTTSKVRNQPQLPLVGRRLSVLDQSVDASIRYLPNPEGMRNHRLKPSHI*HCVIRPYSWRTI*VWLPRCSKFY*RMGA*LW*EFPYSL*RPPFYHRVL 1249
Range 9: 1298 to 1366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 14/23(61%) | 0/23(0%) | Minus/Minus |
Query 469 ILCSTHRFFCFWDILYIHLRTLQ 537 IL HRF CFWDI HLR Q Subject 1298 ILYLNHRFSCFWDISRTHLRIQQ 1366
Range 10: 1019 to 1171 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 30/51(59%) | 0/51(0%) | Plus/Plus |
Query 190 FPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL 342 F VW+ S R+ D LIEY*K PT E+Q R V T RASRVH+G Y IA+L Subject 1019 FRVWKISYRSIDGLIEY*KSPTHERQLRLVAHFTRRASRVHKGYYW*IARL 1171
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 10
Range 1: 11386 to 11988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.4 bits(837) | 0.0 | 171/201(85%) | 0/201(0%) | Plus/Plus |
Query 6 EGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 +G+DDK+EDVRVNKSILT VMLPYVNRTL ILE+TLKSYAKNMGG+R+VKCDLVLIGGSSYLPGLEDILSKHR++DRILKV+DPRAAVAVGCALYSSCLSGSQGLLL+DCAAH+I+IA MSC QIICAPAGAPIPFSGTTPLYL +AN+NS RQ+AVFEGEY+KCP+NRKICGSNIKF DIGV S+SY+PITFYLDV+I++ Subject 11386 KGSDDKKEDVRVNKSILTTVMLPYVNRTLNILEATLKSYAKNMGGLRSVKCDLVLIGGSSYLPGLEDILSKHRRIDRILKVADPRAAVAVGCALYSSCLSGSQGLLLVDCAAHTIAIAGMSCDQIICAPAGAPIPFSGTTPLYLPKANRNSQRQIAVFEGEYVKCPRNRKICGSNIKFLDIGVTSVSYSPITFYLDVTISS 11988
Range 2: 11430 to 11975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.1 bits(714) | 0.0 | 138/182(76%) | 0/182(0%) | Minus/Minus |
Query 50 TSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRI 595 TS+*KV+G YE L+TP+S+N MF+PQIFLFLGHF YSPSNTA *RCEFLLA KY GVVPE G+GAPAGAQ+IW QL+ AI ++*AAQS +N+PCEPERHDEYSAQPTATAARGS TF+IRS RCFD++SS+PGR E+PPISTKSHLTLR PP+F AYD V SKIF+VL T*GSIT VRI Subject 11430 TSK*KVMGEYETLVTPISRNLMFEPQIFLFLGHFTYSPSNTAI*RCEFLLAFGKYNGVVPEKGIGAPAGAQIIWSQLIPAIAMV*AAQSTNNSPCEPERHDEYSAQPTATAARGSATFNIRSIRRCFDKISSKPGRYEEPPISTKSHLTLRNPPIFLAYDLSVASKIFKVLLT*GSITVVRI 11975
Range 3: 11386 to 11796 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 80/137(58%) | 0/137(0%) | Minus/Minus |
Query 6 RERNGSSGRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILPFIISPF 416 RE N SS SAN+LVTAH Y D VS AID *QPL*T +AR + RTTDRD S + +F YSI+ SVFR D+ T KIRR + +*+A N PTH+F VR F + *SSI VREHN +NTFIH NIL FI++PF Subject 11386 REGNRSSSWSANNLVTAHTGYCDGVSRAID**QPL*T*KARRI*RTTDRDRRSGISDFQYSIDSSVFR*DIF*TRKIRRTTD*H*VAFNAP*PTHIFGVRFKCCFQNI*SSIDVREHNSSENTFIHSNILLFIVAPF 11796
Range 4: 11839 to 11967 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/43(42%) | 0/43(0%) | Minus/Minus |
Query 459 IEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM 587 IE D V +A ++ +F V +FS+ GT ++FTFE+C+LT+ Subject 11839 IESDG*V*NACDTDIKKFNV*TANFSISGTLHVFTFEYCDLTL 11967
Range 5: 11387 to 11797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 71/137(52%) | 0/137(0%) | Minus/Minus |
Query 7 PRTEWELRPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPL 417 PR E EL+ ERK*SG SS L R+CE RNR +T VN +GT + AHNRPR L ++L +FD+ VGVS + ED K + L+R * +HP F RT + ++L+FY RKGA* *EYFYS *HPPFY + L Subject 11387 PRRE*ELQLERK*SGHSSYRLLRWCEPRNRLITALVNLKGTTNIAHNRPRPPLGDQRLSIFDRFVGVSIRYLLNPEDTKNHRLALSRI*RSVTHPYFWRTI*VLLPKYLKFY*RKGA*Q**EYFYSL*HPPFYRRSL 11797
Range 6: 11849 to 11911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/21(52%) | 0/21(0%) | Minus/Minus |
Query 469 CSTHRFFCFWDILYIHLRTLQ 531 C +FF FWD IHLR L+ Subject 11849 CLNRKFFYFWDTSRIHLRILR 11911
Range 7: 11400 to 11798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 66/133(50%) | 0/133(0%) | Plus/Plus |
Query 20 *KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLG 418 *KGGC* E*KYS+ YAPLR+*N K +VR+K+GW + *+R S + F+SS + +ETPT+ SN +S S RGRLCA+ +VP FT V RLR S + +S +EL PD+LRS SS+S+LG Subject 11400 *KGGC*SE*KYSHYCYAPLRQ*NFKYFGSNT*IVRQKYGWVTER*MRLSANRWFFVSSGFRRYLIETPTNRSNIESR*SPSGGRGRLCAIFVVPFRFTRAVISRLRGSHHRNSRYEL*PDYLRSSWSSYSLLG 11798
Range 8: 11856 to 11966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 14/37(38%) | 0/37(0%) | Plus/Plus |
Query 476 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLL 586 +RR*I ++SQK KNL +H I + + + +H L Subject 11856 IRR*IREVSQK*KNLRFKH*IS*YRCHKRFILTHHFL 11966
Range 9: 11495 to 11722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 43/76(57%) | 0/76(0%) | Plus/Plus |
Query 115 SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL 342 +RT K WVG L+A * * L IF V + S RNTD+ IEY*K E++SRSVVR RA +VH+GCY*SIA+L Subject 11495 NRTPKIWVGYGALNAT*C*SVVLRIFRV*KISYRNTDESIEY*KSLIPERRSRSVVRYIRRAFQVHKGCY*SIARL 11722
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 10
Range 1: 11386 to 11988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.4 bits(837) | 0.0 | 171/201(85%) | 0/201(0%) | Plus/Plus |
Query 6 EGADDKREDVRVNKSILTAVMLPYVNRTLKILESTLKSYAKNMGGMRNVKCDLVLIGGSSYLPGLEDILSKHRQVDRILKVSDPRAAVAVGCAXXXXXXXXXXXXXXIDCAAHSISIADMSCHQIICAPAGAPIPFSGTTPLYLARANKNSHRQVAVFEGEYIKCPKNRKICGSNIKFCDIGVMSISYAPITFYLDVSIAT 608 +G+DDK+EDVRVNKSILT VMLPYVNRTL ILE+TLKSYAKNMGG+R+VKCDLVLIGGSSYLPGLEDILSKHR++DRILKV+DPRAAVAVGCALYSSCLSGSQGLLL+DCAAH+I+IA MSC QIICAPAGAPIPFSGTTPLYL +AN+NS RQ+AVFEGEY+KCP+NRKICGSNIKF DIGV S+SY+PITFYLDV+I++ Subject 11386 KGSDDKKEDVRVNKSILTTVMLPYVNRTLNILEATLKSYAKNMGGLRSVKCDLVLIGGSSYLPGLEDILSKHRRIDRILKVADPRAAVAVGCALYSSCLSGSQGLLLVDCAAHTIAIAGMSCDQIICAPAGAPIPFSGTTPLYLPKANRNSQRQIAVFEGEYVKCPRNRKICGSNIKFLDIGVTSVSYSPITFYLDVTISS 11988
Range 2: 11430 to 11975 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.1 bits(714) | 0.0 | 138/182(76%) | 0/182(0%) | Minus/Minus |
Query 50 TSR*KVIGAYEMLITPMSQNFMFDPQIFLFLGHFIYSPSNTAT*RCEFLLALAKYRGVVPENGMGAPAGAQMIW*QLMSAIEIL*AAQSISNNPCEPERHDEYSAQPTATAARGSETFSIRSTCRCFDRMSSRPGR*EDPPISTKSHLTLRIPPMFFAYDFKVDSKIFRVLFT*GSITAVRI 595 TS+*KV+G YE L+TP+S+N MF+PQIFLFLGHF YSPSNTA *RCEFLLA KY GVVPE G+GAPAGAQ+IW QL+ AI ++*AAQS +N+PCEPERHDEYSAQPTATAARGS TF+IRS RCFD++SS+PGR E+PPISTKSHLTLR PP+F AYD V SKIF+VL T*GSIT VRI Subject 11430 TSK*KVMGEYETLVTPISRNLMFEPQIFLFLGHFTYSPSNTAI*RCEFLLAFGKYNGVVPEKGIGAPAGAQIIWSQLIPAIAMV*AAQSTNNSPCEPERHDEYSAQPTATAARGSATFNIRSIRRCFDKISSKPGRYEEPPISTKSHLTLRNPPIFLAYDLSVASKIFKVLLT*GSITVVRI 11975
Range 3: 11386 to 11796 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 80/137(58%) | 0/137(0%) | Minus/Minus |
Query 6 RERNGSSGRSANDLVTAHVRYRDTVSCAIDQ*QPL*TREAR*VQRTTDRDCCSRVGNF*YSINLSVFRQDVLQTGKIRRPPNQY*IALNIAHPTHVFRVRL*SRF*DF*SSIHVREHNCRKNTFIHPNILPFIISPF 416 RE N SS SAN+LVTAH Y D VS AID *QPL*T +AR + RTTDRD S + +F YSI+ SVFR D+ T KIRR + +*+A N PTH+F VR F + *SSI VREHN +NTFIH NIL FI++PF Subject 11386 REGNRSSSWSANNLVTAHTGYCDGVSRAID**QPL*T*KARRI*RTTDRDRRSGISDFQYSIDSSVFR*DIF*TRKIRRTTD*H*VAFNAP*PTHIFGVRFKCCFQNI*SSIDVREHNSSENTFIHSNILLFIVAPF 11796
Range 4: 11839 to 11967 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/43(42%) | 0/43(0%) | Minus/Minus |
Query 459 IEGDRRVRDAHHANVAEFYVRPTDFSVFGTFYIFTFEHCNLTM 587 IE D V +A ++ +F V +FS+ GT ++FTFE+C+LT+ Subject 11839 IESDG*V*NACDTDIKKFNV*TANFSISGTLHVFTFEYCDLTL 11967
Range 5: 11387 to 11797 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 71/137(52%) | 0/137(0%) | Minus/Minus |
Query 7 PRTEWELRPERK*SGDSSCPLSRYCELRNRSVTTPVNPRGTMSTAHNRPRLLLEGRKLLVFDQLVGVSTGCPPDREDKKTPQSVLNRT*HCASHPCFSRTTLK*ILRFLEFYSRKGA*LP*EYFYSP*HPPFYHQPL 417 PR E EL+ ERK*SG SS L R+CE RNR +T VN +GT + AHNRPR L ++L +FD+ VGVS + ED K + L+R * +HP F RT + ++L+FY RKGA* *EYFYS *HPPFY + L Subject 11387 PRRE*ELQLERK*SGHSSYRLLRWCEPRNRLITALVNLKGTTNIAHNRPRPPLGDQRLSIFDRFVGVSIRYLLNPEDTKNHRLALSRI*RSVTHPYFWRTI*VLLPKYLKFY*RKGA*Q**EYFYSL*HPPFYRRSL 11797
Range 6: 11849 to 11911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/21(52%) | 0/21(0%) | Minus/Minus |
Query 469 CSTHRFFCFWDILYIHLRTLQ 531 C +FF FWD IHLR L+ Subject 11849 CLNRKFFYFWDTSRIHLRILR 11911
Range 7: 11400 to 11798 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 66/133(50%) | 0/133(0%) | Plus/Plus |
Query 20 *KGGC*GE*KYSYGSYAPLRE*NSKNLRIYFKVVREKHGWDAQC*VRFSTDWGVFLSSRSGGHPVETPTS*SNTKSFRPSSSSRGRLCAVLIVPLGFTGVVTDRLRSSQYLDSGHELSPDHLRSGRSSHSVLG 418 *KGGC* E*KYS+ YAPLR+*N K +VR+K+GW + *+R S + F+SS + +ETPT+ SN +S S RGRLCA+ +VP FT V RLR S + +S +EL PD+LRS SS+S+LG Subject 11400 *KGGC*SE*KYSHYCYAPLRQ*NFKYFGSNT*IVRQKYGWVTER*MRLSANRWFFVSSGFRRYLIETPTNRSNIESR*SPSGGRGRLCAIFVVPFRFTRAVISRLRGSHHRNSRYEL*PDYLRSSWSSYSLLG 11798
Range 8: 11856 to 11966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 14/37(38%) | 0/37(0%) | Plus/Plus |
Query 476 VRR*IYKMSQKQKNLWVEHKILRHWRDEHLVRAYHLL 586 +RR*I ++SQK KNL +H I + + + +H L Subject 11856 IRR*IREVSQK*KNLRFKH*IS*YRCHKRFILTHHFL 11966
Range 9: 11495 to 11722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 43/76(57%) | 0/76(0%) | Plus/Plus |
Query 115 SRTRKTWVGCAMLSAI*Y*LGGLLIFPVWRTSCRNTDKLIEY*KFPTLEQQSRSVVRCTHRASRVHRGCY*SIAQL 342 +RT K WVG L+A * * L IF V + S RNTD+ IEY*K E++SRSVVR RA +VH+GCY*SIA+L Subject 11495 NRTPKIWVGYGALNAT*C*SVVLRIFRV*KISYRNTDESIEY*KSLIPERRSRSVVRYIRRAFQVHKGCY*SIARL 11722
Nucleotide Sequence (423 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
314.5 | 1757.4 | 29% | 4.732e-84 | 95% | DQ286725.2 | |
266.4 | 820.0 | 27% | 1.423e-69 | 39% | NC_004724.1 | |
266.4 | 841.1 | 28% | 1.423e-69 | 40% | JX513891.1 | |
266.4 | 820.0 | 27% | 1.423e-69 | 39% | AF314061.1 | |
228.3 | 388.9 | 33% | 3.996e-58 | 62% | JX559644.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 7
Range 1: 4097 to 4516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.5 bits(680) | 0.0 | 136/140(97%) | 0/140(0%) | Plus/Plus |
Query 2 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 421 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCE KDVPKP LRGG RNGVI+EFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK Subject 4097 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCEKKDVPKPGLRGGSRNGVIKEFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 4516
Range 2: 4098 to 4517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
305.3 bits(660) | 0.0 | 135/140(96%) | 0/140(0%) | Plus/Plus |
Query 3 SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIRARRKMFLSRACVEVRGMELLENLLILFYRPRRACLVA*RISSASRPTFTILTWPSLS*MKITKMFHLFCGSSLK 422 SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIR RRKMFLSR CVEVRGMELL+NLLILFYRPRRACLVA*RISSASRPT TILTWPSLS*MKITKMFH FCGSSLK Subject 4098 SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIRVRRKMFLSRVCVEVRGMELLKNLLILFYRPRRACLVA*RISSASRPTSTILTWPSLS*MKITKMFHSFCGSSLK 4517
Range 3: 4096 to 4518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.9 bits(633) | 0.0 | 134/141(95%) | 0/141(0%) | Plus/Plus |
Query 1 GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YVRDERCS*AALAWRSEEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLRSLS*RGRLFPR*KLRKCFIYFAGPL*R 423 GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YV +ERCS*A AWR EEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLR LS*RGRLFPR*KLRKCFI+FAGPL*R Subject 4096 GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YV*EERCS*AGFAWRFEEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLRPLS*RGRLFPR*KLRKCFIHFAGPL*R 4518
Range 4: 4096 to 4518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 136/141(96%) | 0/141(0%) | Minus/Minus |
Query 1 PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 423 PLERTRK+NETFS*FSSRKETATSR* T*VLMRC*SAMQLNKRDADDKIKSINSLITPFL PPRK GLGTSF SHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS Subject 4096 PLERTRKMNETFS*FSSRKETATSR*WT*VLMRC*SAMQLNKRDADDKIKSINSLITPFLEPPRKPGLGTSFFSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 4518
Range 5: 4097 to 4516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.9 bits(598) | 0.0 | 134/140(96%) | 0/140(0%) | Minus/Minus |
Query 2 FREDPQNK*NIFVIFI*ERDGHVKIVNVGLDALLIRYATKQARRGRXXXXXXXXXXXIPRTSTQARLRNIFRLARITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRDRL 421 FREDPQN+*NIFVIFI*ERDGHVKIV+VGLDALLIRYATKQARRGR*NKINKF NNSIPRTSTQ RLRNIF L RITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRDRL Subject 4097 FREDPQNE*NIFVIFI*ERDGHVKIVDVGLDALLIRYATKQARRGR*NKINKFFNNSIPRTSTQTRLRNIFLLTRITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRDRL 4516
Range 6: 4098 to 4295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Minus |
Query 3 TYHSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYIPQNP*ST 200 TYHSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYIPQNP*ST Subject 4098 TYHSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYIPQNP*ST 4295
Range 7: 4359 to 4517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 52/53(98%) | 0/53(0%) | Minus/Minus |
Query 264 L*RGPAK*MKHFRNFHLGKRRPRQDSERRS*CAADPLCN*TSATRTIK*NQ*I 422 L*RGPAK*MKHFRNFHLGKRRPRQDS RRS*CAADPLCN*TSATRTIK*NQ*I Subject 4359 L*RGPAK*MKHFRNFHLGKRRPRQDSGRRS*CAADPLCN*TSATRTIK*NQ*I 4517
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 8
Range 1: 4082 to 4501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 109/140(78%) | 0/140(0%) | Plus/Plus |
Query 2 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 421 ESITDFAECKVAV+LEELGCLRANAEN+KIRNLAGDS+AAKLASEIVVDI+AKP++K A+H +S+ E K+ KP LRGG + GV++EF+DF+LSSASRLFSC+ADQQRIK+YVHYLD AVSFLD+NYEN+SFI+RVLSK Subject 4082 ESITDFAECKVAVDLEELGCLRANAENEKIRNLAGDSMAAKLASEIVVDIEAKPVAKHAEHPKSEVSEKKEHAKPGLRGGSKAGVLKEFLDFVLSSASRLFSCVADQQRIKSYVHYLDTAVSFLDQNYENLSFIMRVLSK 4501
Range 2: 4081 to 4503 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 96/141(68%) | 0/141(0%) | Minus/Minus |
Query 1 PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 423 P +RTR + E FS*F S+ +TA SR* T L+RC*SA QLNKRDAD++ KS NS TP PPRK G SF S SL SA L G AS+STTISLA+FAA ESPARFRI SFSAFALK PNSS STATLHSAKSVIDS Subject 4081 PFDRTRIMKERFS*F*SKNDTAVSR*WTYDLIRC*SATQLNKRDADERTKSRNSFKTPAFEPPRKPGFACSFFSLTSLFGCSACLATGFASMSTTISLANFAAIESPARFRIFSFSAFALKHPNSSRSTATLHSAKSVIDS 4503
Range 3: 4088 to 4324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 33/79(42%) | 0/79(0%) | Minus/Minus |
Query 8 RTSTQARLRNIFRLARITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRD 244 R STQA R + T RV D F Y+DHY S RC V E+ N + IR QT+ LFK+H +F F +I D Subject 4088 RASTQAGFRVLLLFTHFTLRVFCVFSDRFRFYVDHYLASQFRCH*VASEVPNFFILGIRSQTSQLFKIHSYFAFGEICD 4324
Range 4: 4364 to 4501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 24/46(52%) | 0/46(0%) | Minus/Minus |
Query 284 FREDPQNK*NIFVIFI*ERDGHVKIVNVGLDALLIRYATKQARRGR 421 FR + N+ + VI I*ER VK+++V L++LLIR+AT+QA RGR Subject 4364 FR*NAHNEGEVLVILI*ERYSGVKVMDVRLNSLLIRHATEQA*RGR 4501
Range 5: 4083 to 4487 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 55/135(41%) | 0/135(0%) | Plus/Plus |
Query 3 SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIRARRKMFLSRACVEVRGMELLENLLILFYRPRRACLVA*RISSASRPTFTILTWPSLS*MKITKMFHLFC 407 ++S+I N K W LKS V* RM + +F S T+WQR+ L +*WS * N SL+ + TR V +R+ + ACVE R E ++ I F+RPR AC VA RI++ T LT S*++IT+ C Subject 4083 NQSQISPNAK*LWILKSWDV*ERMPRMKKFGTSLATQWQRNWLAR*WST*KRNLSLNTQNTRRVK*VKRRSTRNPACVEARKPEF*KSSSISFFRPRHACSVAWRINNELSRTSITLTPLYRS*IRITRTSPSLC 4487
Range 6: 4081 to 4488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 53/136(39%) | 0/136(0%) | Plus/Plus |
Query 1 GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YVRDERCS*AALAWRSEEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLRSLS*RGRLFPR*KLRKCFIYFA 408 G++H F M S G+*RV +FE EC + +S+ R L GSE * +SGR+R T * + EE* E LAWR E S+ R+ F VRV LV L GS + +R L * + R +LR+ +++A Subject 4081 GINHRFRRMQSSCGS*RVGMFESECRE*KNSEPRWRLNGSEIG*RDSGRHRSETCR*TRRTPEE*SE*KEGARETRLAWRLESRSFERVPRFRSFVRVTLVQLRGGSTTN*VVRPLP*HRCIVLRSELREPLLHYA 4488
Range 7: 4095 to 4274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/60(47%) | 0/60(0%) | Minus/Minus |
Query 15 HSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYIPQN 194 HSS *R V L RPL * SLP S +R E + +HS SN TLQ P+ L I +N Subject 4095 HSSGVLRV*RQVSLLCRPLSR*PISLPLSRQRGSEFFHSRHSLSNIPTLQDPQLLCIRRN 4274
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 8
Range 1: 4070 to 4489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 110/140(79%) | 0/140(0%) | Plus/Plus |
Query 2 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 421 ESITDFAECKVAVELEELGCLRANAEN+KIRNLAGDS+AAKLASEIVVDIDAKP++K A+H +S+ E K+ KP LRGG + GV++EF+ F+LSSASRLFSC+ADQQRIK+YVHYLD AVSFLD+NYEN+SFI+RVLSK Subject 4070 ESITDFAECKVAVELEELGCLRANAENEKIRNLAGDSMAAKLASEIVVDIDAKPVAKHAEHPKSEVSEKKEHAKPGLRGGSKAGVLKEFLGFVLSSASRLFSCVADQQRIKSYVHYLDTAVSFLDQNYENLSFIMRVLSK 4489
Range 2: 4069 to 4491 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 96/141(68%) | 0/141(0%) | Minus/Minus |
Query 1 PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 423 P +RTR + E FS*F S+ +TA SR* T L+RC*SA QLNKRDAD++ K NS TP PPRK G SF S SL SA L G AS+STTISLA+FAA ESPARFRI SFSAFALK PNSSSSTATLHSAKSVIDS Subject 4069 PFDRTRIMKERFS*F*SKNDTAVSR*WTYDLIRC*SATQLNKRDADERTKPRNSFKTPAFEPPRKPGFACSFFSLTSLFGCSACLATGFASMSTTISLANFAAIESPARFRIFSFSAFALKHPNSSSSTATLHSAKSVIDS 4491
Range 3: 4076 to 4312 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/79(42%) | 0/79(0%) | Minus/Minus |
Query 8 RTSTQARLRNIFRLARITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRD 244 R STQA R + T RV D F VY+DHY S RC V E+ N ++ IR QT+ LFK H +F F ++ D Subject 4076 RASTQAGFRVLLLFTHFTLRVFCVFSDRFRVYVDHYLASQFRCH*VASEVPNFLILGIRSQTSQLFKFHSYFAFGEVCD 4312
Range 4: 4352 to 4489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 26/46(57%) | 0/46(0%) | Minus/Minus |
Query 284 FREDPQNK*NIFVIFI*ERDGHVKIVNVGLDALLIRYATKQARRGR 421 FR + N+ +FVI I*ER VK+++V L++LLIR+AT+QARRGR Subject 4352 FR*NAHNEGEVFVILI*ERYSGVKVMDVRLNSLLIRHATEQARRGR 4489
Range 5: 4071 to 4475 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 56/135(41%) | 0/135(0%) | Plus/Plus |
Query 3 SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIRARRKMFLSRACVEVRGMELLENLLILFYRPRRACLVA*RISSASRPTFTILTWPSLS*MKITKMFHLFC 407 ++S+ N K W+LKS V* RM + +F S T+WQR+ L +*WS *T N SL+ + TR V +R+ + ACVE R E ++ + F+RPRRAC VA RI++ T LT S*++ITK C Subject 4071 NQSQTSPNAK*LWNLKSWDV*ERMPRMRKFGTSLATQWQRNWLAR*WST*TRNLSLNTQNTRRVK*VKRRSTRNPACVEARKPEF*KSSSVSFFRPRRACSVAWRINNELSRTSITLTPLYRS*IRITKTSPSLC 4475
Range 6: 4069 to 4476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 55/136(40%) | 0/136(0%) | Plus/Plus |
Query 1 GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YVRDERCS*AALAWRSEEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLRSLS*RGRLFPR*KLRKCFIYFA 408 G++H M S G *RV +FE EC + +S+ R L GSE * +SGR+RR T * + EE* E LAWR E S+ R+ F VRVALV L GS + +R L * + R +LRK +++A Subject 4069 GINHRLRRMQSSCGT*RVGMFESECRE*ENSEPRWRLNGSEIG*RDSGRHRRETCR*TRRTPEE*SE*KEGARETRLAWRLESRSFERVPRFRSFVRVALVQLRGGSTTN*VVRPLP*HRCIVLRSELRKPLLHYA 4476
Range 7: 4092 to 4262 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 28/57(49%) | 0/57(0%) | Minus/Minus |
Query 24 HSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYI 194 HSS *R V RL RPL * SLP S +R E +HS SN TLQ P+ L I Subject 4092 HSSGVLRV*RQVSRLCRPLSR*PISLPLSRQRGSEFSHSRHSLSNIPTLQVPQLLCI 4262
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 8
Range 1: 4082 to 4501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 109/140(78%) | 0/140(0%) | Plus/Plus |
Query 2 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 421 ESITDFAECKVAV+LEELGCLRANAEN+KIRNLAGDS+AAKLASEIVVDI+AKP++K A+H +S+ E K+ KP LRGG + GV++EF+DF+LSSASRLFSC+ADQQRIK+YVHYLD AVSFLD+NYEN+SFI+RVLSK Subject 4082 ESITDFAECKVAVDLEELGCLRANAENEKIRNLAGDSMAAKLASEIVVDIEAKPVAKHAEHPKSEVSEKKEHAKPGLRGGSKAGVLKEFLDFVLSSASRLFSCVADQQRIKSYVHYLDTAVSFLDQNYENLSFIMRVLSK 4501
Range 2: 4081 to 4503 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.4 bits(418) | 0.0 | 96/141(68%) | 0/141(0%) | Minus/Minus |
Query 1 PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 423 P +RTR + E FS*F S+ +TA SR* T L+RC*SA QLNKRDAD++ KS NS TP PPRK G SF S SL SA L G AS+STTISLA+FAA ESPARFRI SFSAFALK PNSS STATLHSAKSVIDS Subject 4081 PFDRTRIMKERFS*F*SKNDTAVSR*WTYDLIRC*SATQLNKRDADERTKSRNSFKTPAFEPPRKPGFACSFFSLTSLFGCSACLATGFASMSTTISLANFAAIESPARFRIFSFSAFALKHPNSSRSTATLHSAKSVIDS 4503
Range 3: 4088 to 4324 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 33/79(42%) | 0/79(0%) | Minus/Minus |
Query 8 RTSTQARLRNIFRLARITPRVIRSLRDGFSVYIDHYFTS*LRCQRVTGEISNLIVFSIRPQTA*LFKLHGHFTFRKIRD 244 R STQA R + T RV D F Y+DHY S RC V E+ N + IR QT+ LFK+H +F F +I D Subject 4088 RASTQAGFRVLLLFTHFTLRVFCVFSDRFRFYVDHYLASQFRCH*VASEVPNFFILGIRSQTSQLFKIHSYFAFGEICD 4324
Range 4: 4364 to 4501 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 24/46(52%) | 0/46(0%) | Minus/Minus |
Query 284 FREDPQNK*NIFVIFI*ERDGHVKIVNVGLDALLIRYATKQARRGR 421 FR + N+ + VI I*ER VK+++V L++LLIR+AT+QA RGR Subject 4364 FR*NAHNEGEVLVILI*ERYSGVKVMDVRLNSLLIRHATEQA*RGR 4501
Range 5: 4083 to 4487 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 55/135(41%) | 0/135(0%) | Plus/Plus |
Query 3 SRSRILRNVKWPWSLKS*AV*GRMLKTIRFEISPVTRWQRS*LVK*WSI*TLNPSLSERITRGVIRARRKMFLSRACVEVRGMELLENLLILFYRPRRACLVA*RISSASRPTFTILTWPSLS*MKITKMFHLFC 407 ++S+I N K W LKS V* RM + +F S T+WQR+ L +*WS * N SL+ + TR V +R+ + ACVE R E ++ I F+RPR AC VA RI++ T LT S*++IT+ C Subject 4083 NQSQISPNAK*LWILKSWDV*ERMPRMKKFGTSLATQWQRNWLAR*WST*KRNLSLNTQNTRRVK*VKRRSTRNPACVEARKPEF*KSSSISFFRPRHACSVAWRINNELSRTSITLTPLYRS*IRITRTSPSLC 4487
Range 6: 4081 to 4488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 53/136(39%) | 0/136(0%) | Plus/Plus |
Query 1 GVDHGFCGM*SGRGA*RVRLFEGEC*KR*DSKSRR*LAGSEAS**NSGRYRR*THL*ASGSLEE*YVRDERCS*AALAWRSEEWSY*RIY*FYFIVRVALV*LHSGSAAHQDLRSLS*RGRLFPR*KLRKCFIYFA 408 G++H F M S G+*RV +FE EC + +S+ R L GSE * +SGR+R T * + EE* E LAWR E S+ R+ F VRV LV L GS + +R L * + R +LR+ +++A Subject 4081 GINHRFRRMQSSCGS*RVGMFESECRE*KNSEPRWRLNGSEIG*RDSGRHRSETCR*TRRTPEE*SE*KEGARETRLAWRLESRSFERVPRFRSFVRVTLVQLRGGSTTN*VVRPLP*HRCIVLRSELREPLLHYA 4488
Range 7: 4095 to 4274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 28/60(47%) | 0/60(0%) | Minus/Minus |
Query 15 HSSSDPLA*RWV*RLYRPLFH*LASLPASHRRDFESYRFQHSPSNSLTLQAPRPLYIPQN 194 HSS *R V L RPL * SLP S +R E + +HS SN TLQ P+ L I +N Subject 4095 HSSGVLRV*RQVSLLCRPLSR*PISLPLSRQRGSEFFHSRHSLSNIPTLQDPQLLCIRRN 4274
Grapevine leafroll associated virus 2 isolate 3138 07, complete genome
Sequence ID: JX559644.1 Length: 16486 Number of Matches: 2
Range 1: 4099 to 4518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 96/140(69%) | 0/140(0%) | Plus/Plus |
Query 2 ESITDFAECKVAVELEELGCLRANAENDKIRNLAGDSLAAKLASEIVVDIDAKPISKRADHSRSDTCETKDVPKPRLRGGPRNGVIREFIDFILSSASRLFSCIADQQRIKTYVHYLDVAVSFLDENYENVSFILRVLSK 421 ESITDFAECKVA+EL+ELGCLRA AEN+KIRNLAGDS+AAKLASEIVVDID+KP K+ +S S+ + ++V +P LRGG RNGV+ EF+ F++ SA RLF DQQRIK+YV +LD AVSFLD NY+N+SFILRVLS+ Subject 4099 ESITDFAECKVAIELDELGCLRAEAENEKIRNLAGDSIAAKLASEIVVDIDSKPSPKQVGNSSSENADKREVQRPGLRGGSRNGVVGEFLHFVVDSALRLFKYATDQQRIKSYVRFLDSAVSFLDYNYDNLSFILRVLSE 4518
Range 2: 4098 to 4520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 88/141(62%) | 0/141(0%) | Minus/Minus |
Query 1 PLERTRKINETFS*FSSRKETATSR**T*VLMRC*SAMQLNKRDADDKIKSINSLITPFLGPPRKRGLGTSFVSHVSLLE*SARLEMGLASISTTISLASFAASESPARFRILSFSAFALKQPNSSSSTATLHSAKSVIDS 423 P E TR IN+ S* S+ ETA S+ T* L+RC*S L +R A+ K NS TPFL PPRK GL TS +S S E GL SISTTISLAS AA ESPARF I SFSA ALKQPNSSSS ATLHSAKSVIDS Subject 4098 PSESTRSINDRLS*L*SKNETAESKKRT*DLIRC*SVAYLKRRKAESTTK*RNSPTTPFLEPPRKPGL*TSRLSAFSDDELPTCFGEGLESISTTISLASLAAIESPARFLIFSFSASALKQPNSSSSIATLHSAKSVIDS 4520
Nucleotide Sequence (1459 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1068.2 | 6129.8 | 30% | 0 | 98% | DQ286725.2 | |
775.4 | 3744.6 | 35% | 0 | 59% | KP704583.1 | |
771.3 | 3734.5 | 35% | 0 | 59% | NC_004724.1 | |
771.3 | 3734.5 | 35% | 0 | 59% | AF314061.1 | |
770.9 | 3730.0 | 35% | 0 | 59% | KP704580.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 8
Range 1: 14766 to 16148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1068.2 bits(2325) | 0.0 | 456/461(99%) | 0/461(0%) | Plus/Plus |
Query 1 DDAICHRSENYIA*SSKGRF*CVILVRFWG*DYYCY*RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVTPANQT 1383 DDAICHRSENYIA*SSKGRF*CVILVRFWG*+YYCY*RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRK+LVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVTP+ +T Subject 14766 DDAICHRSENYIA*SSKGRF*CVILVRFWG*NYYCY*RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKNLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVTPSVET 16148
Range 2: 14767 to 16149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1065.0 bits(2318) | 0.0 | 456/461(99%) | 0/461(0%) | Minus/Minus |
Query 2 VFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRCDGI*HH 1384 VF G*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQRRNC*LRRRCANDAPLFLYCRFGEKT+RRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNS IPRTVRE*HIRIAPLNFRRCSSRCDGI*HH Subject 14767 VFPRSG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQRRNC*LRRRCANDAPLFLYCRFGEKTKRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSSIPRTVRE*HIRIAPLNFRRCSSRCDGI*HH 16149
Range 3: 14767 to 16155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1005.5 bits(2188) | 0.0 | 456/463(98%) | 0/463(0%) | Plus/Plus |
Query 2 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ 1390 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTS GFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFVKKEIVKMKVIVSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAK SYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSP KH + Subject 14767 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSFGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFVKKEIVKMKVIVSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKTSYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPRAWKHAE 16155
Range 4: 14930 to 16156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
947.7 bits(2062) | 0.0 | 405/409(99%) | 0/409(0%) | Plus/Plus |
Query 165 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI*WQG*FT*DTNMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPR*PNTPN 1391 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI*WQG*FT*DTNMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHP NT N Subject 14930 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI*WQG*FT*DTNMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPERGNTLN 16156
Range 5: 14768 to 14848 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 27/27(100%) | 0/27(0%) | Plus/Plus |
Query 3 *CYMPSQRELHRLKFKGAILMCYSRTV 83 *CYMPSQRELHRLKFKGAILMCYSRTV Subject 14768 *CYMPSQRELHRLKFKGAILMCYSRTV 14848
Range 6: 14766 to 16148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
992.6 bits(2160) | 0.0 | 455/461(99%) | 0/461(0%) | Minus/Minus |
Query 1 CLVSGGDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMAYSII 1383 C + GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YE FAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDTITFILTISFFTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKP+DVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMAYSII Subject 14766 CFHARGDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEVFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDTITFILTISFFTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPKDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMAYSII 16148
Range 7: 14768 to 15523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
565.6 bits(1228) | 0.0 | 251/252(100%) | 0/252(0%) | Minus/Minus |
Query 3 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPLQ*Q**SYPQNRTRITHQNRPFEL*AM*FSLRWHIAS 758 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPLQ*Q** YPQNRTRITHQNRPFEL*AM*FSLRWHIAS Subject 14768 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPLQ*Q**FYPQNRTRITHQNRPFEL*AM*FSLRWHIAS 15523
Range 8: 15599 to 16135 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
417.1 bits(904) | 0.0 | 178/179(99%) | 0/179(0%) | Minus/Minus |
Query 834 GVTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 1370 GVTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTR LRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP Subject 15599 GVTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRFLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 16135
Grapevine leafroll associated virus 2 isolate NbRGp major coat protein, 19 kDa protein, and 24 kDa protein genes, complete cds
Sequence ID: KP704583.1 Length: 1749 Number of Matches: 10
Range 1: 154 to 1542 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
775.4 bits(1686) | 0.0 | 358/463(77%) | 0/463(0%) | Plus/Plus |
Query 2 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ 1390 ++LYA+AARTTSPKVQR DSD++F GD+T+ VTEGDLKKVL+G APL RFTNKLRT GRTFTEAY+DFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*WK LRI * AQ+KTQ+ *SS+LM +LI *YA I A +AKT**+I +V IT R+RY IT+PQL+S +T I W*NSF*++ T GFFS+ T +EERR CAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*S LFVKKEIVKM+VIVSPYEAEDIL RST+MLRNIDSG LD +ECIK FST+TR++HCAKASYQWCVDTGL QRDCAEKRLIDT+ESNLR+AQPL+REKVA H CKDEP+ELVAFITRKYVKLTGV REAVKIEMR+LSKTVLNKLSLEMAFYMSP K+ + Subject 154 LLLYALAARTTSPKVQRADSDIIFQNTYGDKTVVVTEGDLKKVLEGCAPLNRFTNKLRTFGRTFTEAYVDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WKFALRILRH*CYYAQIKTQHY*SSSLMMKLICRNC*YAGIYACRIAGMXLVVIAKT**RILKVHITPSSARERYGMITSPQLKSTITLIAW*NSF*KQETFFGFFSKVTSKEERRDTCAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SNLFVKKEIVKMRVIVSPYEAEDILTRSTEMLRNIDSGALDTRECIKAFSTLTRDLHCAKASYQWCVDTGLCQRDCAEKRLIDTVESNLRLAQPLIREKVATHFCKDEPKELVAFITRKYVKLTGVAAREAVKIEMRTLSKTVLNKLSLEMAFYMSPRAWKNAE 1542
Range 2: 165 to 1520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
713.1 bits(1550) | 0.0 | 341/452(75%) | 0/452(0%) | Minus/Minus |
Query 13 GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA 1368 GDI*KAIS DSLF TVLDR RISIFTASR TPVSLTYFRVMNAT+SLGSSLQ+* ATFSR RG*A L+FDS VSI+RFSAQSR +NPVSTHH Y+AFAQC SRV VEN L+HS +SN PLSMFRNISVDL RMSSAS*GDTIT ILTISFFTKR DYRLSFYQYLLQT+LHGTAMRSKEEIVSFEEGAQ++RRSS V EKKP++V+ *KEF+H + VI+L +CG VI+ YR R + VM T +I YYVFA + H+ +A I AY* R IN IR DD* CVL CA +* ILS +FHHITSLLPNWR+LLTGV TTPPSVF+AYILANIFLLCC+SESFG AP+KSAAR ESSAGIPNSAAALS*GILCL ATQKS YASV VRP VRSLLVNL+RGA+PSSTFLRSPSVT VLSP + SES L*TLGDVVLAA A Subject 165 GDI*KAISKDSLFKTVLDRVRISIFTASRAATPVSLTYFRVMNATSSLGSSLQK*VATFSRMRG*ASLRFDSTVSIKRFSAQSRWHNPVSTHHWYDAFAQCKSRVSVENALMHSLVSNAPLSMFRNISVDLVRMSSAS*GDTITLILTISFFTKRFDYRLSFYQYLLQTILHGTAMRSKEEIVSFEEGAQVSRRSSFDVTLEKKPKNVSCF*KEFHHAISVIVLFNCGLVIIPYRSRADDGVMCTFKILYYVFAITTSHIPAMRHA*IPAY*QFRQINFIIRLDD**CCVLICA**H*CLRILSANFHHITSLLPNWRKLLTGVFTTPPSVFKAYILANIFLLCCNSESFGQAPKKSAARYESSAGIPNSAAALS*GILCL*ATQKSTYASVNVRPKVRSLLVNLLRGAHPSSTFLRSPSVTTTVLSP*VF*KIISESAL*TLGDVVLAARA 1520
Range 3: 264 to 1520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
637.1 bits(1384) | 0.0 | 288/419(69%) | 0/419(0%) | Plus/Plus |
Query 112 RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVT 1368 R S E A*R+ TS *+H*Q +N+ H + V *FLRG+QA DASAQR RR+GDT RF+P G + ETL* K KNV +YVR ED* SKY R* PI *E SYVMEIC QN E+LVLLRT QNT LLV+KSD +VNLPK+LICGYLRVS GDV GC RED++K+FEGAHHTVIRS T++YDYES KEYN++ CVVKFFLETGDVFWFFL+SD +GRAARHLRTFFEANNFFFGSHCGTME+CLKQVLIETESVI+SFCEERNR*DEGDSISL*S*RHS ++N VAKHRQW VGYE ++*S+ D N R ALRKS+V MVR*+ V+ T LR KT DR+ ++ + RSTS REGG+S L R*T R SGVH+A+I * + C +GG K+R+A SI*DS K*T+ RNGLLYVT Subject 264 R*SQESA*RVRTS**IH*QAANFRPHVYGGVC*FLRGLQA*DASAQRGRRIGDTSRRFVPSCGLFRCLPETL*ITTK*KNVCKYVRFED*GRSSKYAR**FAPIR*ERSYVMEICAQNPEALVLLRTNQNTTLLVVKSDDEVNLPKLLICGYLRVSHRGDVXGCNREDVIKBFEGAHHTVIRSRTVRYDYESAVKEYNNADCVVKFFLETGDVFWFFLQSDIKGRAARHLRTFFEANNFFFGSHCGTMEYCLKQVLIETESVIESFCEERNR*DEGDSISL*S*RHSNKIN*NVAKHRQWSVGYERVH*SVLDANARFALRKSIVPMVR*HRVVPT*LRRKTLDRHR*IKSETRSTSHTREGGDSFLQR*TQRTSGVHHAEIR*AHRCGGAGGCKNRNAHSI*DSFK*TIFRNGLLYVT 1520
Range 4: 158 to 217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Plus |
Query 6 CYMPSQRELHRLKFKGAILM 65 C SQRE HR KF+G IL+ Subject 158 CSTLSQREPHRPKFRGLILI 217
Range 5: 163 to 1536 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
559.6 bits(1215) | 0.0 | 273/458(60%) | 0/458(0%) | Minus/Minus |
Query 11 VFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRCDGI 1384 VF *HI+GHF*R FI* CLR* H Y Y LP HT + N+F R+ERH* FIF KM RHLLA+ERLS+S I +G+DQAFF A+ L P +NAPL+R FCA+ S RR+ FN IQ +TVYVSQH * NVFSFIRRYYH HLNDFFLHKK RLQTQFLSVPASNN PWYRNAIQRRNC*LRRRCA+ APLFL C FGEKT++R L+RI P N + T *L RN TV S+ +CD H +N LL LRD R R N RIL +* HQ * L +LCF+LC L ++SE +FPSHNF PT LA I NG YY SLQSVHT +HFS LL FREFR + K+R VRIF YPQ CG VELRHL+LV HAEINIR + A SS+ VSE KRC KH L+I F + NS + +V + +IRI+PLNF RC SRC+ + Subject 163 VFPRSR*HIEGHF*R*FI*NCLR*SAHFYFYSLPRRHTCELNVFPRDERH*FFGFIFAKMSRHLLAYERLSESQI*FNGVDQAFFGAITLAQPCVNAPLVRCFCAVQISR*RRERFNALSRIQRSTVYVSQHFS*SC*NVFSFIRRYYHPHLNDFFLHKKIRLQTQFLSVPASNNTPWYRNAIQRRNC*LRRRCASVAPLFL*CHFGEKTKKRLLFLKRISPRNQRYCTL*LRTRNHTVPFSSG*RCDVHLQNXLLRLRDYNQXHPRDATRVNTRILTISAD*LHHQT*RLVMLCFDLCVIALVPQDSERKFPSHNFSPT*LAQITNGRIYYSALSLQSVHTCKHFSTLL*FREFRAST*KVRS*VRIFCWYPQFCGRVELRHLMLVSHAEINIRLRKRAAESSQLVSESIKRCAPFKHFLEITFCHDNSLVTVSVLKDYIRISPLNFGRCGSRCESV 1536
Range 6: 263 to 910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 136/216(63%) | 0/216(0%) | Minus/Minus |
Query 111 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPL 758 NQKTSPVS+KNFTTQ LYSL DS*SY V+ER+TV* APSK F SSR P TSP DTRKYPHI+ G+LT SDL TS++VF* VR+STS S F* QISIT*L SY IG + *R YLL QSS+RTY +TFF F +QRVS ++P G NL VSP LR R*AEAS AC PRRNQ+T * C F C** *EV+ QA S*D L Subject 263 NQKTSPVSKKNFTTQSALLYSLTADS*SYRTVLERMTV*CAPSKXFITSSRLQPXTSPRCDTRKYPHINNFGRLTSSSDLTTSNVVF*FVRNSTSASGF*AQISIT*LLSYLIGANY*RAYLLLRPQSSKRTYLQTFFYFVVIQRVSGKHLKSPQLGTNLLLVSPILRPR*AEASYACKPRRNQHTPP*TCGRKFAAC**IY*EVRTLQALS*DHL 910
Range 7: 986 to 1519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.5 bits(536) | 0.0 | 121/178(68%) | 0/178(0%) | Minus/Minus |
Query 834 VTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 1367 VTY+RPFL VYL LS*IE A L L+PP H * * I A**TPL L VHL K++SPPSR EVER + + RS VF+R+ V T QRTI T LLR+A L L+S+ L* SYPT HCLCFAT++L ECLQLHKEILSPSS*RFLSSQK+SITDSVSISTCFKQ SMVPQCDP Subject 986 VTYRRPFLKIVYLKLS*IECAFLFLQPPAPPHL*A*RISA**TPLVLWVHLCKNESPPSRV*EVERVSDLIQRCRSSVFRRNHVGTTLCQRTIGTMLLRSANLALASRTL*CTLSYPTLHCLCFATFQLILLECLQLHKEILSPSS*RFLSSQKDSITDSVSISTCFKQYSMVPQCDP 1519
Range 8: 170 to 217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Minus |
Query 18 HQNRPFEL*AM*FSLR 65 +QN+P EL AM FSLR Subject 170 YQNQPSELWAMWFSLR 217
Range 9: 707 to 1543 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
348.8 bits(755) | 0.0 | 175/279(63%) | 0/279(0%) | Plus/Plus |
Query 555 NMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPR*PNTPN 1391 NMR+F R+ R + SRR +K F C+SH + +N TV LR+ S* V * L G+IL R+ R LVFSPK RKSGA+ AHLLRS*QFLLWIALRYHG LFEAGTDRN*VCNR FL*RKKSLR* **YLLMKLKTF + Q CCET*TV WI + LK RR* E C AQK R NGAL G N A KNA*S P ++I*+SLNLS ARRWR+IF KMN ++*WRS R N L+ +V GR *+*+C LYLRQ+*IN *KWP ICH T N Subject 707 NMRVFTRVASRGCXWL*SRRRNKXF*RCTSHRHPLENGTV*LRVRS*RVQ*R*LRGEILFRNRRRFLVFSPK*HQRKSGATLAHLLRS*QFLLWIALRYHGVLFEAGTDRN*VCNRIFL*RKKSLR*G**YLLMKLKTF*QDQLKCCET*TVERWIRESALKRSRR*REICTAQKHRTNGALTQGCANVIAPKNA*STPLNQI*DSLNLSYARRWRLIFAKMNPKN*WRSSRGNTLSSQVWRRGRL*K*KCALYLRQF*INYL*KWPSICHLERGKTQN 1543
Range 10: 317 to 679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 71/121(59%) | 0/121(0%) | Plus/Plus |
Query 165 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI* 527 T+ EL A ++R+LISAW TS RCLSST+PQ+WGY+ KI T R F RNSLN +K EKC +VCTL*RL+ **+ PL I AN VG KLCDGNL SE S H SKHN S Q+* Subject 317 TSCELSAARLRRRMLISAWLTSIRCLSSTRPQNWGYQQKIRT*LRTF*VLARNSLNYNKVEKCLQVCTL*RLRAE**IRPLVICAN*VGEKLCDGNLRSES*GTSAITHKSKHNITSRQV* 679
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 10
Range 1: 14757 to 16145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
771.3 bits(1677) | 0.0 | 357/463(77%) | 0/463(0%) | Plus/Plus |
Query 2 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ 1390 ++LYA+AARTTSPKVQR DSD++F GD+T+ VTEGDLKKVL+G APL RFTNKLRT GRTFTEAY+DFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*WK LRI * AQ+KTQ+ *SS+LM +LI *YA I A * +AKT**+I +V IT R+R IT+PQL+S +T I W*NSF*++ T GFFS+ T +EERR CAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*S LFVKKEIVKM+VIVSPYEAEDIL RST+MLRNIDSG LD +ECIK FST+TR++HCAKASYQWCVDTGL QRDCAEKRLIDT+ESNLR+A PL+REKVA H CKDEP+ELVAFITRKYVKLTGV REAVKIEMR+LSKTVLNKLSLEMAFYMSP K+ + Subject 14757 LLLYALAARTTSPKVQRADSDIIFQNTYGDKTVVVTEGDLKKVLEGCAPLNRFTNKLRTFGRTFTEAYVDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WKFALRILRH*CYYAQIKTQHY*SSSLMMKLICRNC*YAGIYACRIAGM*LVVIAKT**RILKVHITPSSARERSGMITSPQLKSTITLIAW*NSF*KQETFFGFFSKVTSKEERRDTCAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SNLFVKKEIVKMRVIVSPYEAEDILTRSTEMLRNIDSGALDTRECIKAFSTLTRDLHCAKASYQWCVDTGLCQRDCAEKRLIDTVESNLRLAHPLIREKVATHFCKDEPKELVAFITRKYVKLTGVAAREAVKIEMRTLSKTVLNKLSLEMAFYMSPRAWKNAE 16145
Range 2: 14768 to 16123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
708.5 bits(1540) | 0.0 | 340/452(75%) | 0/452(0%) | Minus/Minus |
Query 13 GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA 1368 GDI*KAIS DSLF TVLDR RISIFTASR TPVSLTYFRVMNAT+SLGSSLQ+* ATFSR RG*A L+FDS VSI+RFSAQSR +NPVSTHH Y+AFAQC SRV VEN L+HS +SN PLSMFRNISVDL RMSSAS*GDTIT ILTISFFTKR DYRLSFYQYLLQT+LHGTAMRSKEEIVSFEEGAQ++RRSS V EKKP++V+ *KEF+H + VI+L +CG VI+ R R + VM T +I YYVFA + H+ +A I AY* R IN IR DD* CVL CA +* ILS +FHHITSLLPNWR+LLTGV TTPPSVF+AYILANIFLLCC+SESFG AP+KSAAR ESSAGIPNSAAALS*GILCL ATQKS YASV VRP VRSLLVNL+RGA+PSSTFLRSPSVT VLSP + SES L*TLGDVVLAA A Subject 14768 GDI*KAISKDSLFKTVLDRVRISIFTASRAATPVSLTYFRVMNATSSLGSSLQK*VATFSRMRG*ASLRFDSTVSIKRFSAQSRWHNPVSTHHWYDAFAQCKSRVSVENALMHSLVSNAPLSMFRNISVDLVRMSSAS*GDTITLILTISFFTKRFDYRLSFYQYLLQTILHGTAMRSKEEIVSFEEGAQVSRRSSFDVTLEKKPKNVSCF*KEFHHAISVIVLFNCGLVIIPDRSRADDGVMCTFKILYYVFAITTSHIPAMRHA*IPAY*QFRQINFIIRLDD**CCVLICA**H*CLRILSANFHHITSLLPNWRKLLTGVFTTPPSVFKAYILANIFLLCCNSESFGQAPKKSAARYESSAGIPNSAAALS*GILCL*ATQKSTYASVNVRPKVRSLLVNLLRGAHPSSTFLRSPSVTTTVLSP*VF*KIISESAL*TLGDVVLAARA 16123
Range 3: 14867 to 16123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
640.3 bits(1391) | 0.0 | 289/419(69%) | 0/419(0%) | Plus/Plus |
Query 112 RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVT 1368 R S E A*R+ TS *+H*Q +N+ H + V *FLRG+QA DASAQR RR+GDT RF+P G + ETL* K KNV +YVR ED* SKY R* PI *E SYVMEIC QN E+LVLLRT QNT LLV+KSD +VNLPK+LICGYLRVS GDVTGC RED++KDFEGAHHTVIRS T++YDYES KEYN++ CVVKFFLETGDVFWFFL+SD +GRAARHLRTFFEANNFFFGSHCGTME+CLKQVLIETESVI+SFCEERNR*DEGDSISL*S*RHS ++N VAKHRQW VGYE ++*S+ D N R ALRKS+V MVR*+ V+ T LR KT DR+ ++ + RS S REGG+S L R*T R SGVH+A+I * + C +GG K+R+A SI*DS K*T+ RNGLLYVT Subject 14867 R*SQESA*RVRTS**IH*QAANFRPHVYGGVC*FLRGLQA*DASAQRGRRIGDTSRRFVPSCGLFRCLPETL*ITTK*KNVCKYVRFED*GRSSKYAR**FAPIR*ERSYVMEICAQNPEALVLLRTNQNTTLLVVKSDDEVNLPKLLICGYLRVSHRGDVTGCNREDVIKDFEGAHHTVIRSRTVRYDYESAVKEYNNADCVVKFFLETGDVFWFFLQSDIKGRAARHLRTFFEANNFFFGSHCGTMEYCLKQVLIETESVIESFCEERNR*DEGDSISL*S*RHSNKIN*NVAKHRQWSVGYERVH*SVLDANARFALRKSIVPMVR*HRVVPT*LRRKTLDRHR*IKSETRSPSHTREGGDSFLQR*TQRTSGVHHAEIR*AHRCGGAGGCKNRNAHSI*DSFK*TIFRNGLLYVT 16123
Range 4: 14761 to 14820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Plus |
Query 6 CYMPSQRELHRLKFKGAILM 65 C SQRE HR KF+G IL+ Subject 14761 CSTLSQREPHRPKFRGLILI 14820
Range 5: 14766 to 16139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
556.4 bits(1208) | 0.0 | 272/458(59%) | 0/458(0%) | Minus/Minus |
Query 11 VFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRCDGI 1384 VF *HI+GHF*R FI* CLR* H Y Y LP HT + N+F R+ERH* FIF KM RHLLA+ER+S+S I +G+DQAFF A+ L P +NAPL+R FCA+ S RR+ FN IQ +TVYVSQH * NVFSFIRRYYH HLNDFFLHKK RLQTQFLSVPASNN PWYRNAIQRRNC*LRRRCA+ APLFL C FGEKT++R L+RI P N + T *L RN T S+ +CD H +N LL LRD S R R N RIL +* HQ * L +LCF+LC L ++SE +FPSHNF PT LA I NG YY SLQSVHT +HFS LL FREFR + K+R VRIF YPQ CG VELRHL+LV HAEINIR + A SS+ VSE KRC KH L+I F + NS + +V + +IRI+PLNF RC SRC+ + Subject 14766 VFPRSR*HIEGHF*R*FI*NCLR*SAHFYFYSLPRRHTCELNVFPRDERH*FFGFIFAKMSRHLLAYERVSESQI*FNGVDQAFFGAITLAQPCVNAPLVRCFCAVQISR*RRERFNALSRIQRSTVYVSQHFS*SC*NVFSFIRRYYHPHLNDFFLHKKIRLQTQFLSVPASNNTPWYRNAIQRRNC*LRRRCASVAPLFL*CHFGEKTKKRLLFLKRISPRNQRYCTL*LRTRNHTGPFSSG*RCDVHLQNPLLRLRDYNQSHPRDATRVNTRILTISAD*LHHQT*RLVMLCFDLCVIALVPQDSERKFPSHNFSPT*LAQITNGRIYYSALSLQSVHTCKHFSTLL*FREFRAST*KVRS*VRIFCWYPQFCGRVELRHLMLVSHAEINIRLRKRAAESSQLVSESIKRCAPFKHFLEITFCHDNSLVTVSVLKDYIRISPLNFGRCGSRCESV 16139
Range 6: 14866 to 15513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 138/216(64%) | 0/216(0%) | Minus/Minus |
Query 111 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPL 758 NQKTSPVS+KNFTTQ LYSL DS*SY V+ER+TV* APSKSF SSR PVTSP DTRKYPHI+ G+LT SDL TS++VF* VR+STS S F* QISIT*L SY IG + *R YLL QSS+RTY +TFF F +QRVS ++P G NL VSP LR R*AEAS AC PRRNQ+T * C F C** *EV+ QA S*D L Subject 14866 NQKTSPVSKKNFTTQSALLYSLTADS*SYRTVLERMTV*CAPSKSFITSSRLQPVTSPRCDTRKYPHINNFGRLTSSSDLTTSNVVF*FVRNSTSASGF*AQISIT*LLSYLIGANY*RAYLLLRPQSSKRTYLQTFFYFVVIQRVSGKHLKSPQLGTNLLLVSPILRPR*AEASYACKPRRNQHTPP*TCGRKFAAC**IY*EVRTLQALS*DHL 15513
Range 7: 15589 to 16122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 120/178(67%) | 0/178(0%) | Minus/Minus |
Query 834 VTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 1367 VTY+RPFL VYL LS*IE A L L+PP H * * I A**TPL L VHL K++SPPSR E ER + + RS VF+R+ V T QRTI T LLR+A L L+S+ L* SYPT HCLCFAT++L ECLQLHKEILSPSS*RFLSSQK+SITDSVSISTCFKQ SMVPQCDP Subject 15589 VTYRRPFLKIVYLKLS*IECAFLFLQPPAPPHL*A*RISA**TPLVLWVHLCKNESPPSRV*EGERVSDLIQRCRSSVFRRNHVGTTLCQRTIGTMLLRSANLALASRTL*CTLSYPTLHCLCFATFQLILLECLQLHKEILSPSS*RFLSSQKDSITDSVSISTCFKQYSMVPQCDP 16122
Range 8: 14773 to 14820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Minus |
Query 18 HQNRPFEL*AM*FSLR 65 +QN+P EL AM FSLR Subject 14773 YQNQPSELWAMWFSLR 14820
Range 9: 15310 to 16146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 174/279(62%) | 0/279(0%) | Plus/Plus |
Query 555 NMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPR*PNTPN 1391 NMR+F R+ R D + SRR +K F C+SH + +N V LR+ S* V * L G+IL R+ R LVFSPK RKSGA+ AHLLRS*QFLLWIALRYHG LFEAGTDRN*VCNR FL*RKKSLR* **YLLMKLKTF + Q CCET*TV WI + LK RR* E C AQK R NGAL G N A KNA*S P ++I*+SL LS ARRWR+IF KMN ++*WRS R N L+ +V GR *+*+C LYLRQ+*IN *KWP ICH T N Subject 15310 NMRVFTRVASRGCDWL*SRRRNKGF*RCTSHRHPLENGPV*LRVRS*RVQ*R*LRGEILFRNRRRFLVFSPK*HQRKSGATLAHLLRS*QFLLWIALRYHGVLFEAGTDRN*VCNRIFL*RKKSLR*G**YLLMKLKTF*QDQLKCCET*TVERWIRESALKRSRR*REICTAQKHRTNGALTQGCANVIAPKNA*STPLNQI*DSLTLSYARRWRLIFAKMNPKN*WRSSRGNTLSSQVWRRGRL*K*KCALYLRQF*INYL*KWPSICHLERGKTQN 16146
Range 10: 14920 to 15282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 71/121(59%) | 0/121(0%) | Plus/Plus |
Query 165 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI* 527 T+ EL A ++R+LISAW TS RCLSST+PQ+WGY+ KI T R F RNSLN +K EKC +VCTL*RL+ **+ PL I AN VG KLCDGNL SE S H SKHN S Q+* Subject 14920 TSCELSAARLRRRMLISAWLTSIRCLSSTRPQNWGYQQKIRT*LRTF*VLARNSLNYNKVEKCLQVCTL*RLRAE**IRPLVICAN*VGEKLCDGNLRSES*GTSAITHKSKHNITSRQV* 15282
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 10
Range 1: 14757 to 16145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
771.3 bits(1677) | 0.0 | 357/463(77%) | 0/463(0%) | Plus/Plus |
Query 2 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ 1390 ++LYA+AARTTSPKVQR DSD++F GD+T+ VTEGDLKKVL+G APL RFTNKLRT GRTFTEAY+DFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*WK LRI * AQ+KTQ+ *SS+LM +LI *YA I A * +AKT**+I +V IT R+R IT+PQL+S +T I W*NSF*++ T GFFS+ T +EERR CAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*S LFVKKEIVKM+VIVSPYEAEDIL RST+MLRNIDSG LD +ECIK FST+TR++HCAKASYQWCVDTGL QRDCAEKRLIDT+ESNLR+A PL+REKVA H CKDEP+ELVAFITRKYVKLTGV REAVKIEMR+LSKTVLNKLSLEMAFYMSP K+ + Subject 14757 LLLYALAARTTSPKVQRADSDIIFQNTYGDKTVVVTEGDLKKVLEGCAPLNRFTNKLRTFGRTFTEAYVDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WKFALRILRH*CYYAQIKTQHY*SSSLMMKLICRNC*YAGIYACRIAGM*LVVIAKT**RILKVHITPSSARERSGMITSPQLKSTITLIAW*NSF*KQETFFGFFSKVTSKEERRDTCAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SNLFVKKEIVKMRVIVSPYEAEDILTRSTEMLRNIDSGALDTRECIKAFSTLTRDLHCAKASYQWCVDTGLCQRDCAEKRLIDTVESNLRLAHPLIREKVATHFCKDEPKELVAFITRKYVKLTGVAAREAVKIEMRTLSKTVLNKLSLEMAFYMSPRAWKNAE 16145
Range 2: 14768 to 16123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
708.5 bits(1540) | 0.0 | 340/452(75%) | 0/452(0%) | Minus/Minus |
Query 13 GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA 1368 GDI*KAIS DSLF TVLDR RISIFTASR TPVSLTYFRVMNAT+SLGSSLQ+* ATFSR RG*A L+FDS VSI+RFSAQSR +NPVSTHH Y+AFAQC SRV VEN L+HS +SN PLSMFRNISVDL RMSSAS*GDTIT ILTISFFTKR DYRLSFYQYLLQT+LHGTAMRSKEEIVSFEEGAQ++RRSS V EKKP++V+ *KEF+H + VI+L +CG VI+ R R + VM T +I YYVFA + H+ +A I AY* R IN IR DD* CVL CA +* ILS +FHHITSLLPNWR+LLTGV TTPPSVF+AYILANIFLLCC+SESFG AP+KSAAR ESSAGIPNSAAALS*GILCL ATQKS YASV VRP VRSLLVNL+RGA+PSSTFLRSPSVT VLSP + SES L*TLGDVVLAA A Subject 14768 GDI*KAISKDSLFKTVLDRVRISIFTASRAATPVSLTYFRVMNATSSLGSSLQK*VATFSRMRG*ASLRFDSTVSIKRFSAQSRWHNPVSTHHWYDAFAQCKSRVSVENALMHSLVSNAPLSMFRNISVDLVRMSSAS*GDTITLILTISFFTKRFDYRLSFYQYLLQTILHGTAMRSKEEIVSFEEGAQVSRRSSFDVTLEKKPKNVSCF*KEFHHAISVIVLFNCGLVIIPDRSRADDGVMCTFKILYYVFAITTSHIPAMRHA*IPAY*QFRQINFIIRLDD**CCVLICA**H*CLRILSANFHHITSLLPNWRKLLTGVFTTPPSVFKAYILANIFLLCCNSESFGQAPKKSAARYESSAGIPNSAAALS*GILCL*ATQKSTYASVNVRPKVRSLLVNLLRGAHPSSTFLRSPSVTTTVLSP*VF*KIISESAL*TLGDVVLAARA 16123
Range 3: 14867 to 16123 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
640.3 bits(1391) | 0.0 | 289/419(69%) | 0/419(0%) | Plus/Plus |
Query 112 RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVT 1368 R S E A*R+ TS *+H*Q +N+ H + V *FLRG+QA DASAQR RR+GDT RF+P G + ETL* K KNV +YVR ED* SKY R* PI *E SYVMEIC QN E+LVLLRT QNT LLV+KSD +VNLPK+LICGYLRVS GDVTGC RED++KDFEGAHHTVIRS T++YDYES KEYN++ CVVKFFLETGDVFWFFL+SD +GRAARHLRTFFEANNFFFGSHCGTME+CLKQVLIETESVI+SFCEERNR*DEGDSISL*S*RHS ++N VAKHRQW VGYE ++*S+ D N R ALRKS+V MVR*+ V+ T LR KT DR+ ++ + RS S REGG+S L R*T R SGVH+A+I * + C +GG K+R+A SI*DS K*T+ RNGLLYVT Subject 14867 R*SQESA*RVRTS**IH*QAANFRPHVYGGVC*FLRGLQA*DASAQRGRRIGDTSRRFVPSCGLFRCLPETL*ITTK*KNVCKYVRFED*GRSSKYAR**FAPIR*ERSYVMEICAQNPEALVLLRTNQNTTLLVVKSDDEVNLPKLLICGYLRVSHRGDVTGCNREDVIKDFEGAHHTVIRSRTVRYDYESAVKEYNNADCVVKFFLETGDVFWFFLQSDIKGRAARHLRTFFEANNFFFGSHCGTMEYCLKQVLIETESVIESFCEERNR*DEGDSISL*S*RHSNKIN*NVAKHRQWSVGYERVH*SVLDANARFALRKSIVPMVR*HRVVPT*LRRKTLDRHR*IKSETRSPSHTREGGDSFLQR*TQRTSGVHHAEIR*AHRCGGAGGCKNRNAHSI*DSFK*TIFRNGLLYVT 16123
Range 4: 14761 to 14820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Plus |
Query 6 CYMPSQRELHRLKFKGAILM 65 C SQRE HR KF+G IL+ Subject 14761 CSTLSQREPHRPKFRGLILI 14820
Range 5: 14766 to 16139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
556.4 bits(1208) | 0.0 | 272/458(59%) | 0/458(0%) | Minus/Minus |
Query 11 VFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRCDGI 1384 VF *HI+GHF*R FI* CLR* H Y Y LP HT + N+F R+ERH* FIF KM RHLLA+ER+S+S I +G+DQAFF A+ L P +NAPL+R FCA+ S RR+ FN IQ +TVYVSQH * NVFSFIRRYYH HLNDFFLHKK RLQTQFLSVPASNN PWYRNAIQRRNC*LRRRCA+ APLFL C FGEKT++R L+RI P N + T *L RN T S+ +CD H +N LL LRD S R R N RIL +* HQ * L +LCF+LC L ++SE +FPSHNF PT LA I NG YY SLQSVHT +HFS LL FREFR + K+R VRIF YPQ CG VELRHL+LV HAEINIR + A SS+ VSE KRC KH L+I F + NS + +V + +IRI+PLNF RC SRC+ + Subject 14766 VFPRSR*HIEGHF*R*FI*NCLR*SAHFYFYSLPRRHTCELNVFPRDERH*FFGFIFAKMSRHLLAYERVSESQI*FNGVDQAFFGAITLAQPCVNAPLVRCFCAVQISR*RRERFNALSRIQRSTVYVSQHFS*SC*NVFSFIRRYYHPHLNDFFLHKKIRLQTQFLSVPASNNTPWYRNAIQRRNC*LRRRCASVAPLFL*CHFGEKTKKRLLFLKRISPRNQRYCTL*LRTRNHTGPFSSG*RCDVHLQNPLLRLRDYNQSHPRDATRVNTRILTISAD*LHHQT*RLVMLCFDLCVIALVPQDSERKFPSHNFSPT*LAQITNGRIYYSALSLQSVHTCKHFSTLL*FREFRAST*KVRS*VRIFCWYPQFCGRVELRHLMLVSHAEINIRLRKRAAESSQLVSESIKRCAPFKHFLEITFCHDNSLVTVSVLKDYIRISPLNFGRCGSRCESV 16139
Range 6: 14866 to 15513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 138/216(64%) | 0/216(0%) | Minus/Minus |
Query 111 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPL 758 NQKTSPVS+KNFTTQ LYSL DS*SY V+ER+TV* APSKSF SSR PVTSP DTRKYPHI+ G+LT SDL TS++VF* VR+STS S F* QISIT*L SY IG + *R YLL QSS+RTY +TFF F +QRVS ++P G NL VSP LR R*AEAS AC PRRNQ+T * C F C** *EV+ QA S*D L Subject 14866 NQKTSPVSKKNFTTQSALLYSLTADS*SYRTVLERMTV*CAPSKSFITSSRLQPVTSPRCDTRKYPHINNFGRLTSSSDLTTSNVVF*FVRNSTSASGF*AQISIT*LLSYLIGANY*RAYLLLRPQSSKRTYLQTFFYFVVIQRVSGKHLKSPQLGTNLLLVSPILRPR*AEASYACKPRRNQHTPP*TCGRKFAAC**IY*EVRTLQALS*DHL 15513
Range 7: 15589 to 16122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.3 bits(529) | 0.0 | 120/178(67%) | 0/178(0%) | Minus/Minus |
Query 834 VTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 1367 VTY+RPFL VYL LS*IE A L L+PP H * * I A**TPL L VHL K++SPPSR E ER + + RS VF+R+ V T QRTI T LLR+A L L+S+ L* SYPT HCLCFAT++L ECLQLHKEILSPSS*RFLSSQK+SITDSVSISTCFKQ SMVPQCDP Subject 15589 VTYRRPFLKIVYLKLS*IECAFLFLQPPAPPHL*A*RISA**TPLVLWVHLCKNESPPSRV*EGERVSDLIQRCRSSVFRRNHVGTTLCQRTIGTMLLRSANLALASRTL*CTLSYPTLHCLCFATFQLILLECLQLHKEILSPSS*RFLSSQKDSITDSVSISTCFKQYSMVPQCDP 16122
Range 8: 14773 to 14820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Minus |
Query 18 HQNRPFEL*AM*FSLR 65 +QN+P EL AM FSLR Subject 14773 YQNQPSELWAMWFSLR 14820
Range 9: 15310 to 16146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 174/279(62%) | 0/279(0%) | Plus/Plus |
Query 555 NMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPR*PNTPN 1391 NMR+F R+ R D + SRR +K F C+SH + +N V LR+ S* V * L G+IL R+ R LVFSPK RKSGA+ AHLLRS*QFLLWIALRYHG LFEAGTDRN*VCNR FL*RKKSLR* **YLLMKLKTF + Q CCET*TV WI + LK RR* E C AQK R NGAL G N A KNA*S P ++I*+SL LS ARRWR+IF KMN ++*WRS R N L+ +V GR *+*+C LYLRQ+*IN *KWP ICH T N Subject 15310 NMRVFTRVASRGCDWL*SRRRNKGF*RCTSHRHPLENGPV*LRVRS*RVQ*R*LRGEILFRNRRRFLVFSPK*HQRKSGATLAHLLRS*QFLLWIALRYHGVLFEAGTDRN*VCNRIFL*RKKSLR*G**YLLMKLKTF*QDQLKCCET*TVERWIRESALKRSRR*REICTAQKHRTNGALTQGCANVIAPKNA*STPLNQI*DSLTLSYARRWRLIFAKMNPKN*WRSSRGNTLSSQVWRRGRL*K*KCALYLRQF*INYL*KWPSICHLERGKTQN 16146
Range 10: 14920 to 15282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 71/121(59%) | 0/121(0%) | Plus/Plus |
Query 165 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI* 527 T+ EL A ++R+LISAW TS RCLSST+PQ+WGY+ KI T R F RNSLN +K EKC +VCTL*RL+ **+ PL I AN VG KLCDGNL SE S H SKHN S Q+* Subject 14920 TSCELSAARLRRRMLISAWLTSIRCLSSTRPQNWGYQQKIRT*LRTF*VLARNSLNYNKVEKCLQVCTL*RLRAE**IRPLVICAN*VGEKLCDGNLRSES*GTSAITHKSKHNITSRQV* 15282
Grapevine leafroll associated virus 2 isolate RGp major coat protein, 19 kDa protein, and 24 kDa protein genes, complete cds
Sequence ID: KP704580.1 Length: 1749 Number of Matches: 10
Range 1: 154 to 1542 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
770.9 bits(1676) | 0.0 | 357/463(77%) | 0/463(0%) | Plus/Plus |
Query 2 MMLYAIAARTTSPKVQRGDSDVLFSYGSGDRTITVTEGDLKKVLDGFAPLTRFTNKLRTMGRTFTEAYIDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVSTPVSNLRQLGRREVM*WKSVLRIPNR*YCSAQLKTQYC*SSNLMARLIYLRY*YADICAYPATET*RDAVAKT**KISRVLITL*FVRQRYSTITNPQLRSIMTPIVW*NSF*RRVTSSGFFSEATVEEERRVICAPSSKLTISSLDRIAVPWSIV*SRY**KLSL*SILFXXXXXXXXXXXXSPYEAEDILARSTDMLRNIDSGVLDMKECIKVFSTITREVHCAKASYQWCVDTGLYQRDCAEKRLIDTIESNLRIAQPLVREKVANHLCKDEPRELVAFITRKYVKLTGVPIREAVKIEMRSLSKTVLNKLSLEMAFYMSPPLTKHTQ 1390 ++LYA+AARTTSPKVQR DSD++F GD+T+ VTEGDLKKVL+G APL RFTNKLRT GRTFTEAY+DFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVV+TPVSNLRQLGRREVM*WK LRI * AQ+KTQ+ *SS+LM +LI *YA I A * +AKT**+I +V IT R+RY IT+PQL+S +T I W*NSF*++ T GFFS+ T +EERR CA SSKLTISSLDRIAVPWSIV*SRY**KLSL*S LFVKKEIVKM+VIVSPYEAE IL RST+MLRNIDSG LD +ECIK FST+TR++HCAKASYQWCVDTGL QRDCAEKRLIDT+ESNLR+AQPL+REKVA H CKDEP+ELVAFITRKYVKLTGV REAVKIEMR+LSKTVLNKLSLEMAFYMSP K+ + Subject 154 LLLYALAARTTSPKVQRADSDIIFQNTYGDKTVVVTEGDLKKVLEGCAPLNRFTNKLRTFGRTFTEAYVDFCVAYKHKMPQLNAAAELGIPAEDSYLAADFLGACPKLSELQQSRKMFASMYALKTEGGVVNTPVSNLRQLGRREVM*WKFALRILRH*CYYAQIKTQHY*SSSLMMKLICRNC*YAGIYACRIAGM*LVVIAKT**RILKVHITPSSARERYGMITSPQLKSTITLIAW*NSF*KQETFFGFFSKVTSKEERRDTCAXSSKLTISSLDRIAVPWSIV*SRY**KLSL*SNLFVKKEIVKMRVIVSPYEAEXILTRSTEMLRNIDSGALDTRECIKAFSTLTRDLHCAKASYQWCVDTGLCQRDCAEKRLIDTVESNLRLAQPLIREKVATHFCKDEPKELVAFITRKYVKLTGVAAREAVKIEMRTLSKTVLNKLSLEMAFYMSPRAWKNAE 1542
Range 2: 165 to 1520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
707.6 bits(1538) | 0.0 | 339/452(75%) | 0/452(0%) | Minus/Minus |
Query 13 GDI*KAISNDSLFNTVLDRERISIFTASRMGTPVSLTYFRVMNATNSLGSSLQR*FATFSRTRG*AILKFDSMVSIRRFSAQSR*YNPVSTHH*YEAFAQCTSRVIVENTLIHSFISNTPLSMFRNISVDLARMSSAS*GDXXXXXXXXXXXTKRIDYRLSFYQYLLQTMLHGTAMRSKEEIVSFEEGAQMTRRSSSTVASEKKPEDVTRL*KEFYHTMGVIILLSCGFVIVLYRCRTNYSVMSTLEIFYYVFATASRHVSVAGYAQISAY*YLR*INLAIRFDD*QYCVLSCAEQY*RFGILSTDFHHITSLLPNWRRLLTGVLTTPPSVFRAYILANIFLLCCSSESFGHAPRKSAAR*ESSAGIPNSAAALS*GILCLYATQKSIYASVKVRPIVRSLLVNLVRGANPSSTFLRSPSVTVIVLSPEPYENNTSESPL*TLGDVVLAAMA 1368 GDI*KAIS DSLF TVLDR RISIFTASR TPVSLTYFRVMNAT+SLGSSLQ+* ATFSR RG*A L+FDS VSI+RFSAQSR +NPVSTHH Y+AFAQC SRV VEN L+HS +SN PLSMFRNISVDL RM SAS*GDTIT ILTISFFTKR DYRLSFYQYLLQT+LHGTAMRSKEEIVSFEE AQ++RRSS V EKKP++V+ *KEF+H + VI+L +CG VI+ YR R + VM T +I YYVFA + H+ +A I AY* R IN IR DD* CVL CA +* ILS +FHHITSLLPNWR+LLTGV TTPPSVF+AYILANIFLLCC+SESFG AP+KSAAR ESSAGIPNSAAALS*GILCL ATQKS YASV VRP VRSLLVNL+RGA+PSSTFLRSPSVT VLSP + SES L*TLGDVVLAA A Subject 165 GDI*KAISKDSLFKTVLDRVRISIFTASRAATPVSLTYFRVMNATSSLGSSLQK*VATFSRMRG*ASLRFDSTVSIKRFSAQSRWHNPVSTHHWYDAFAQCKSRVSVENALMHSLVSNAPLSMFRNISVDLVRMXSAS*GDTITLILTISFFTKRFDYRLSFYQYLLQTILHGTAMRSKEEIVSFEEXAQVSRRSSFDVTLEKKPKNVSCF*KEFHHAISVIVLFNCGLVIIPYRSRADDGVMCTFKILYYVFAITTSHIPAMRHA*IPAY*QFRQINFIIRLDD**CCVLICA**H*CLRILSANFHHITSLLPNWRKLLTGVFTTPPSVFKAYILANIFLLCCNSESFGQAPKKSAARYESSAGIPNSAAALS*GILCL*ATQKSTYASVNVRPKVRSLLVNLLRGAHPSSTFLRSPSVTTTVLSP*VF*KIISESAL*TLGDVVLAARA 1520
Range 3: 264 to 1520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
637.5 bits(1385) | 0.0 | 288/419(69%) | 0/419(0%) | Plus/Plus |
Query 112 RGS*EGA*RICTSY*VH*QTSNYGSHFHRSVY*FLRGVQAQDASAQRSRRVGDTG*RFLPCSGFSGSMSETL*TAAKQKNVREYVRSED*RWGSKYTR*QSTPIG*EGSYVMEICTQNSESLVLLRTTQNTILLVIKSDGKVNLPKILICGYLRVSCHGDVTGCCREDIVKDFEGAHHTVIRSTTIQYDYESTAKEYNDSHCVVKFFLETGDVFWFFLRSDSRGRAARHLRTFFEANNFFFGSHCGTMEHCLKQVLIETESVIDSFCEERNR*DEGDSISL*S*RHSGEVNRYVAKHRQWCVGYEGMY*SIFDDNTRSALRKSLVSMVR*YWVISTRLR*KTPDRYHRVEFKNRSTSRAREGGESSL*R*T*RVSGVHYAKIC*TYGCAHSGGRKDRDAFSI*DSIK*TVVRNGLLYVT 1368 R S E A*R+ TS *+H*Q +N+ H + V *FLRG+QA DASAQR RR+GDT RF+P G + ETL* K KNV +YVR ED* SKY R* PI *E SYVMEIC QN E+LVLLRT QNT LLV+KSD +VNLPK+LICGYLRVS GDVTGC RED++KDFEGAHHTVIRS T++YDYES KEYN++ CVVKFFLETGDVFWFFL+SD +GRAARHLR FFEANNFFFGSHCGTME+CLKQVLIETESVI+SFCEERNR*DEGDSISL*S* HS ++N VAKHRQW VGYE ++*S+ D N R ALRKS+V MVR*+ V+ T LR KT DR+ ++ + RSTS REGG+S L R*T R SGVH+A+I * + C +GG K+R+A SI*DS K*T+ RNGLLYVT Subject 264 R*SQESA*RVRTS**IH*QAANFRPHVYGGVC*FLRGLQA*DASAQRGRRIGDTSRRFVPSCGLFRCLPETL*ITTK*KNVCKYVRFED*GRSSKYAR**FAPIR*ERSYVMEICAQNPEALVLLRTNQNTTLLVVKSDDEVNLPKLLICGYLRVSHRGDVTGCNREDVIKDFEGAHHTVIRSRTVRYDYESAVKEYNNADCVVKFFLETGDVFWFFLQSDIKGRAARHLRXFFEANNFFFGSHCGTMEYCLKQVLIETESVIESFCEERNR*DEGDSISL*S*XHSNKIN*NVAKHRQWSVGYERVH*SVLDANARFALRKSIVPMVR*HRVVPT*LRRKTLDRHR*IKSETRSTSHTREGGDSFLQR*TQRTSGVHHAEIR*AHRCGGAGGCKNRNAHSI*DSFK*TIFRNGLLYVT 1520
Range 4: 158 to 217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Plus |
Query 6 CYMPSQRELHRLKFKGAILM 65 C SQRE HR KF+G IL+ Subject 158 CSTLSQREPHRPKFRGLILI 217
Range 5: 163 to 1536 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
558.7 bits(1213) | 0.0 | 272/458(59%) | 0/458(0%) | Minus/Minus |
Query 11 VFG*RG*HIKGHF*RQFI*YCLR*RTHLYLYGLPNGHTRKFNIFSRNERH*LSRFIFTKMIRHLLAHERLSDS*IRLDGIDQAFFSAVALI*PSINAPLIRGFCAMHFSCYRRKYFNTFLHIQHTTVYVSQHIG*PRQNVFSFIRRYYHLHLNDFFLHKKNRLQTQFLSVPASNNAPWYRNAIQXXXXXXXXXCANDAPLFLYCRFGEKTRRRHPSLERILPHNGSHYTP*LWIRNRTVSLSNELQCDEHPRNLLLCLRDSIPSRLRGRIRANIRILVS*VN*PCHQI**LAVLCFELCGAVLAIRNSEYRFPSHNFPPTQLA*IANGCTYYPTFSLQSVHTREHFSALLQFREFRTCSQKIRCKVRIFSRYPQLCGCVELRHLVLVRHAEINIRFCESATHSSKFVSEPSKRCKSVKHLLKIPFSNSNSPIPRTVRE*HIRIAPLNFRRCSSRCDGI 1384 VF *HI+GHF*R FI* CLR* H Y Y LP HT + N+F R+ERH* FIF KM RHLLA+ERLS+S I +G+DQAFF A+ L P +NAPL+R FCA+ S RR+ FN IQ +TVYVSQH * N FSFIRRYYH HLNDFFLHKK RLQTQFLSVPASNN PWYRNAIQRRNC*LRR CA+ APLFL C FGEKT++R L+RI P N + T *L RN TV S+ +CD H +N LL LRD S R R N RIL +* HQ * L +LCF+LC L ++SE +FPSHNF PT LA I NG YY SLQSVHT +HFS LL FREFR + K+R VRIF YPQ CG VELRHL+LV HAEINIR + A SS+ VSE KRC KH L+I F + NS + +V + +IRI+PLNF RC SRC+ + Subject 163 VFPRSR*HIEGHF*R*FI*NCLR*SAHFYFYSLPRRHTCELNVFPRDERH*FFGFIFAKMSRHLLAYERLSESQI*FNGVDQAFFGAITLAQPCVNAPLVRCFCAVQISR*RRERFNALSRIQRSTVYVSQHFS*SC*NXFSFIRRYYHPHLNDFFLHKKIRLQTQFLSVPASNNTPWYRNAIQRRNC*LRRXCASVAPLFL*CHFGEKTKKRLLFLKRISPRNQRYCTL*LRTRNHTVPFSSG*RCDVHLQNPLLRLRDYNQSHPRDATRVNTRILTISAD*LHHQT*RLVMLCFDLCVIALVPQDSERKFPSHNFSPT*LAQITNGRIYYSALSLQSVHTCKHFSTLL*FREFRAST*KVRS*VRIFCWYPQFCGRVELRHLMLVSHAEINIRLRKRAAESSQLVSESIKRCAPFKHFLEITFCHDNSLVTVSVLKDYIRISPLNFGRCGSRCESV 1536
Range 6: 263 to 910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 138/216(64%) | 0/216(0%) | Minus/Minus |
Query 111 NQKTSPVSRKNFTTQWESLYSLAVDS*SYCIVVERITV**APSKSFTMSSRQHPVTSPWQDTRKYPHISILGKLTLPSDLMTSSIVF*VVRSSTSDSEF*VQISIT*LPSYPIGVDC*RVYLLPHLQSSERTYSRTFFCFAAVQRVSDMLPENPLQGKNLQPVSPTLRLR*AEASCACTPRRNQYTLL*KCDP*FEVC**T**EVQIRQAPS*DPL 758 NQKTSPVS+KNFTTQ LYSL DS*SY V+ER+TV* APSKSF SSR PVTSP DTRKYPHI+ G+LT SDL TS++VF* VR+STS S F* QISIT*L SY IG + *R YLL QSS+RTY +TFF F +QRVS ++P G NL VSP LR R*AEAS AC PRRNQ+T * C F C** *EV+ QA S*D L Subject 263 NQKTSPVSKKNFTTQSALLYSLTADS*SYRTVLERMTV*CAPSKSFITSSRLQPVTSPRCDTRKYPHINNFGRLTSSSDLTTSNVVF*FVRNSTSASGF*AQISIT*LLSYLIGANY*RAYLLLRPQSSKRTYLQTFFYFVVIQRVSGKHLKSPQLGTNLLLVSPILRPR*AEASYACKPRRNQHTPP*TCGRKFAAC**IY*EVRTLQALS*DHL 910
Range 7: 986 to 1519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.9 bits(526) | 0.0 | 120/178(67%) | 0/178(0%) | Minus/Minus |
Query 834 VTYKRPFLTTVYLILS*IENASLSLRPPEWAHP*V*HIFA**TPLTL*VHLYKDDSPPSRAREVERFLNSTRWYRSGVFQRSRVDITQYQRTIDTRLLRNALLVLSSKIL*YIPSYPTHHCLCFATYRLTSPECLQLHKEILSPSS*RFLSSQKESITDSVSISTCFKQCSMVPQCDP 1367 VTY+RPFL VYL LS*IE A L L+PP H * * I A**TPL L VHL K++SPPSR EVER + + RS VF+R+ V T QRTI T LLR+A L L+S+ L* SYPT HCLCFAT++L E LQLHKEILSPSS*RFLSSQK+SITDSVSISTCFKQ SMVPQCDP Subject 986 VTYRRPFLKIVYLKLS*IECAFLFLQPPAPPHL*A*RISA**TPLVLWVHLCKNESPPSRV*EVERVSDLIQRCRSSVFRRNHVGTTLCQRTIGTMLLRSANLALASRTL*CTLSYPTLHCLCFATFQLILLEXLQLHKEILSPSS*RFLSSQKDSITDSVSISTCFKQYSMVPQCDP 1519
Range 8: 170 to 217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Minus |
Query 18 HQNRPFEL*AM*FSLR 65 +QN+P EL AM FSLR Subject 170 YQNQPSELWAMWFSLR 217
Range 9: 707 to 1543 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
344.7 bits(746) | 0.0 | 174/279(62%) | 0/279(0%) | Plus/Plus |
Query 555 NMRIFARILPRRRDGMLSRRHSKRFRGCSSHCNSFDNDTVRLRIHS*GV**LPLCGKILSRDG*RLLVFSPKRQ*RKSGASFAHLLRS*QFLLWIALRYHGALFEAGTDRN*VCNRFFL*RKKSLR*R**YLLMKLKTFWRGQPICCET*TVVCWI*RNVLKYFRR*HEKCIAQKPRINGALILGYINATALKNA*SIPSSRI*ESLNLSCARRWRIIFVKMNLES*WRSLRENMLNLRVCPFGRP*R*RCVLYLRQY*INCR*KWPFICHPR*PNTPN 1391 NMR+F R+ R D + SRR +K F C+SH + +N TV LR+ S* V * L G+IL R+ R LVFSPK RKSGA+ A LLRS*QFLLWIALRYHG LFEAGTDRN*VCNR FL*RKKSLR* **YLLMKLK F + Q CCET*TV WI + LK RR* E C AQK R NGAL G N A KNA*S P ++I*+SLNLS ARRWR+IF KMN ++*WRS R N L+ +V GR *+*+C LYLRQ+*IN *KWP ICH T N Subject 707 NMRVFTRVASRGCDWL*SRRRNKGF*RCTSHRHPLENGTV*LRVRS*RVQ*R*LRGEILFRNRRRFLVFSPK*HQRKSGATLAXLLRS*QFLLWIALRYHGVLFEAGTDRN*VCNRIFL*RKKSLR*G**YLLMKLKXF*QDQLKCCET*TVERWIRESALKRSRR*REICTAQKHRTNGALTQGCANVIAPKNA*STPLNQI*DSLNLSYARRWRLIFAKMNPKN*WRSSRGNTLSSQVWRRGRL*K*KCALYLRQF*INYL*KWPSICHLERGKTQN 1543
Range 10: 317 to 679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 71/121(59%) | 0/121(0%) | Plus/Plus |
Query 165 TNFELWVALSQKRILISAWRTSTRCLSSTQPQSWGYRLKILTLQRIFWEHVRNSLNCSKAEKCSRVCTL*RLKVG**VHPLAIYANWVGGKLCDGNLYSEFRIASTAPHNSKHNTASHQI* 527 T+ EL A ++R+LISAW TS RCLSST+PQ+WGY+ KI T R F RNSLN +K EKC +VCTL*RL+ **+ PL I AN VG KLCDGNL SE S H SKHN S Q+* Subject 317 TSCELSAARLRRRMLISAWLTSIRCLSSTRPQNWGYQQKIRT*LRTF*VLARNSLNYNKVEKCLQVCTL*RLRAE**IRPLVICAN*VGEKLCDGNLRSES*GTSAITHKSKHNITSRQV* 679
Nucleotide Sequence (810 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
642.1 | 3572.3 | 29% | 0 | 98% | DQ286725.2 | |
549.1 | 2017.8 | 29% | 2.772e-154 | 50% | NC_004724.1 | |
549.1 | 2017.8 | 29% | 2.772e-154 | 50% | AF314061.1 | |
547.3 | 1982.5 | 29% | 9.874e-154 | 48% | JX513891.1 | |
554.6 | 2017.3 | 36% | 6.131e-156 | 46% | EF012720.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 7
Range 1: 12252 to 13052 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
642.1 bits(1395) | 0.0 | 263/267(99%) | 0/267(0%) | Plus/Plus |
Query 9 SEVTRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 S+VTRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIV+KSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDR LVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYC HIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY Subject 12252 SKVTRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVKKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRTLVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCAHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 13052
Range 2: 12250 to 13053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
616.0 bits(1338) | 0.0 | 264/268(99%) | 0/268(0%) | Minus/Minus |
Query 7 CMWSRRHCTLYKSRRECQ*VRVSCQAT*RINRYFPSTS*YEYNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIEYLVDFSRPRSVRQYF*IGISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN 810 CMWSRRHCT YKSR+ECQ*VRVSCQAT*RINRYFPSTS*YE+NTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHI QLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIEYLVDFSRPRSVRQYF*IGISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN Subject 12250 CMWSRRHCTPYKSRKECQ*VRVSCQAT*RINRYFPSTS*YEHNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHISQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIEYLVDFSRPRSVRQYF*IGISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN 13053
Range 3: 12251 to 13051 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
606.4 bits(1317) | 0.0 | 263/267(99%) | 0/267(0%) | Minus/Minus |
Query 8 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRVTSE 808 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI* QYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTK+LSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDF TILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRVT E Subject 12251 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*AQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKVLSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFFTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRVTFE 13051
Range 4: 12249 to 13052 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
595.4 bits(1293) | 0.0 | 263/268(98%) | 0/268(0%) | Minus/Minus |
Query 6 VCGVEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES*PSNF*T 809 VCGVEDTVL TKVV+NASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQ+SITRI*VRKTHEILNIFHRVFLAFSLYIRITF SYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGL YNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES*PSNF*T Subject 12249 VCGVEDTVLLTKVVKNASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQSSITRI*VRKTHEILNIFHRVFLAFSLYIRITFLSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLLYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES*PSNF*T 13052
Range 5: 12250 to 13053 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
572.9 bits(1244) | 0.0 | 263/268(98%) | 0/268(0%) | Plus/Plus |
Query 7 VQKLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAXXXXXXXXXXXXXPHT 810 VQKLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL* SPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*L+NVIRM*RLKAKNTRWKMLRISCVFLT*IRVIE W*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAF TTFV+STVSSTPHT Subject 12250 VQKLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*RSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LRNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIELW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAFFTTFVRSTVSSTPHT 13053
Range 6: 12251 to 12805 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
425.4 bits(922) | 0.0 | 183/185(99%) | 0/185(0%) | Plus/Plus |
Query 8 FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RVNQ 562 F+SYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*+M*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RVNQ Subject 12251 FKSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*EM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RVNQ 12805
Range 7: 12860 to 13009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 49/50(98%) | 0/50(0%) | Plus/Plus |
Query 617 HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTYWHS 766 HVPI*PKSTEVTGG*YFAL*EVL SYQEVLGKYRFILHVA*QDTLTYWHS Subject 12860 HVPI*PKSTEVTGG*YFAL*EVLCSYQEVLGKYRFILHVA*QDTLTYWHS 13009
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 8
Range 1: 12248 to 13039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
549.1 bits(1192) | 0.0 | 218/264(83%) | 0/264(0%) | Plus/Plus |
Query 18 TRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 T L LY KMSNHSW SLFKK+YGEADW+KYLSKSI AH+A++K LPD QLYGGR V+KS+FESA PRSFEQELGL +LSERDVGW KMCG+TVEEA YQ+TNP A+PI AEKCDPDVKTEGQKY+MEDV NFMR SNLD +D+IL EQCWSLSNSCGVLINPDDKERFV+LTFKNNEL+NDSSNANIDCRV DYLVYAMSLFN R+QKSQAGNISLYEKYC +IR YLE+TDL+FTSPDRIPLLTGILYDFCKEY++FYSTY Subject 12248 TTLVLYHQTKMSNHSWGSLFKKYYGEADWRKYLSKSIVAHTANIKTLPDVQLYGGRTVKKSEFESATPRSFEQELGLLMLSERDVGWCKMCGITVEEAMYQITNPEAYPITAEKCDPDVKTEGQKYTMEDVMNFMRRSNLDINDKILAEQCWSLSNSCGVLINPDDKERFVALTFKNNELVNDSSNANIDCRVGDYLVYAMSLFNCRSQKSQAGNISLYEKYCAYIRTYLENTDLYFTSPDRIPLLTGILYDFCKEYNIFYSTY 13039
Range 2: 12247 to 13038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
446.0 bits(967) | 0.0 | 201/264(76%) | 0/264(0%) | Minus/Minus |
Query 17 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRV 808 YVE*K LYSLQKS*RMPVS GILSG+VK KSV SK L+* QYFS*SE+LPACDF L LNRD+A*T+*S TRQS+FALLESL NSLFL VR T RSLSSGLI+TPHELD+DQHCS KILS +S+LERRMKF TSSI YF PSVFTSGSHFSA IG A GFV WY ASSTV+PHIL PTSRSL++ SPNSCSNDLG ADS SDF T+LPPYN* SG+ F A A +LL+RYF QSASP* FLNRL HEWFDIF+ *R S V Subject 12247 YVE*KILYSLQKS*RMPVSNGILSGEVKYKSVFSK*VLM*AQYFS*SEMLPACDF*LLQLNRDIA*TK*SPTRQSMFALLESLTNSLFLKVRATNRSLSSGLIKTPHELDRDQHCSAKILSFISRLERRMKFITSSIVYFCPSVFTSGSHFSAVIGYASGFVIWYIASSTVIPHILHQPTSRSLNIRSPNSCSNDLGVADSNSDFFTVLPPYN*TSGKVFMLAVWATMLLERYFLQSASP*YFLNRLPHEWFDIFVWW*RTSVV 13038
Range 3: 12254 to 13039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.8 bits(613) | 0.0 | 135/262(52%) | 0/262(0%) | Minus/Minus |
Query 24 VCGVEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES* 809 VCG++D +LF +++ENA +* YP+ R E *IG F V D+S IL ++RN+TRL LL ++*GH VN*+I +ATVY+ V +V+ VI + + ++ F I+G+NQN RI *RPTL + I I*V THEI ++FHRVFL S +I I FF DR VR+LV CL HS+ HL P H+ *++ S FLLE RS R K GL ++ST+VQL++ F+V V N R VF PICLPV FEQT P*VVRHL VE+* Subject 12254 VCGIKDIILFAEIIENAGE*RYPIGRSEI*IGIF*VSSDVSAILFVERNVTRLRLLTPTIE*GHSVN*VITHATVYVRVA*IVNQFVILKSESNKPFFIIGVNQNSARIG*RPTLFR*DFIIYI*VGTTHEIHHVFHRVFLPLSFHIWIAFFRCDRIRFRVRDLVHCLLHSYPAHLTPTHVPFT*HQKS*FLLERPRSRRFKFGLLHSSTAVQLNVRQSFYVSCVGYNALREVFPPICLPVVLFEQTSP*VVRHLRLVVEN* 13039
Range 4: 12396 to 13040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 109/215(51%) | 0/215(0%) | Minus/Minus |
Query 166 CMWSRRHCTLYKSRRECQ*VRVSCQAT*RINRYFPSTS*YEYNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIE 810 CMW++R+ TL ++ REC+*V VS + * INRYF S * + NT +AK YP TS + *IGT RKL N RDSL R +R* RY * *E + V Y R *S+ TN I+TN +FYH YL DA*NS LPS I Q H D IF L + GS* GTLP PQ TS P L V IPAR SE Q RTS QFY RT E Subject 12396 CMWNKRYYTLCRNHRECR*VTVSYREK*NINRYFLSKF*CKRNTFRRAKCYPLATSDSYN*IGT*RKLSNHPRDSLCSRCLNR*PIRYS*K*EQQTVLYHRG*SKLRTNWIETNTVPLRFYHLYLGWNDA*NSSRLPSCISAPQFSHLDRIFPL*SDTLQGS*FGTLPPPQLSRTSYTNPRPVHLTSEVLIPARTTSESPIQIRTSSQFYRRTTE 13040
Range 5: 12237 to 12344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 32/36(89%) | 0/36(0%) | Minus/Minus |
Query 7 GISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN 114 GISSNLPPR F*TDFPMSGSTSSS GRELA *LLN Subject 12237 GISSNLPPRSTF*TDFPMSGSTSSSGGRELAL*LLN 12344
Range 6: 12243 to 13040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 135/266(51%) | 0/266(0%) | Plus/Plus |
Query 13 KLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAXXXXXXXXXXXXXPHT 810 +L * ST RCRTTHG+VCSK+ TGRQIG NT L+ L T T*K+ + +CT VEL* SP L+ +LR SSRN D+ * + W G RC *LW+RQ T SRT S KN I+M*+L+ +NTRWK ISCV T*I +I+ ++VGLY IR F*L P I+N L +IT+ T + T+ *TVA I *FT CPY RS +RV FR +SI L S T K+PIY S GY Y AFS KS +S PHT Subject 12243 ELQR*FSTTRRRCRTTHGEVCSKSTTGRQIGGNTSLRAL*PTQLT*KLCRTFSCTAVEL*RSPNLNRRLRGRSSRN*DF*C*VNGTWVGVRCAG*LWRRQCTKSRTLKRIRSQRKNAIQM*KLRGRNTRWKT**ISCVVPT*I*MIKS*RNSVGLYPIRAEF*LTPMIKNGLLLSLLRITNWLTIQATRT*TVAWVIT*FTLCPYSIVGVRSRKRVTFRSTKSIALTSELT*KIPIYISLLPIGYRYSPAFSMISAKSIISFIPHT 13040
Range 7: 12238 to 12786 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 99/183(54%) | 0/183(0%) | Plus/Plus |
Query 8 FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RV 556 F+SY+ASSLP DEDVEPLMGKSVQK+LRGGRLEEIP+*++C + S+VRR*NC+EVR *+ SE++RAGI T K G+ DV +CG G+VP HEP S S KM S C++* +I DGR EFHASF RY+**N +LV I FV D* R * T S+ +*R+ Subject 12238 FKSYNASSLPPDEDVEPLMGKSVQKVLRGGRLEEIPL*EHCSPHS*HKNFAGRSVVRR*NCEEVRI*IGDSEVVRAGIRTSDVK*TGRGLV*DVRDNCGGGNVPNHEP*SVSDHSGKMRSRCEN*GAEIHDGRRDEFHASFQPRYK**NLSGTVLVSIQFVRSFD*PR**RTVCCSHF*E*RI 12786
Range 8: 12847 to 12996 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 25/50(50%) | 0/50(0%) | Plus/Plus |
Query 617 HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTYWHS 766 +VPI +EV G*+FAL +VL +Q +L KYRFI H + DT+T+ HS Subject 12847 YVPIQL*ESEVASG*HFALRKVLRLHQNLLRKYRFIFHFSR*DTVTHRHS 12996
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 8
Range 1: 12248 to 13039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
549.1 bits(1192) | 0.0 | 218/264(83%) | 0/264(0%) | Plus/Plus |
Query 18 TRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 T L LY KMSNHSW SLFKK+YGEADW+KYLSKSI AH+A++K LPD QLYGGR V+KS+FESA PRSFEQELGL +LSERDVGW KMCG+TVEEA YQ+TNP A+PI AEKCDPDVKTEGQKY+MEDV NFMR SNLD +D+IL EQCWSLSNSCGVLINPDDKERFV+LTFKNNEL+NDSSNANIDCRV DYLVYAMSLFN R+QKSQAGNISLYEKYC +IR YLE+TDL+FTSPDRIPLLTGILYDFCKEY++FYSTY Subject 12248 TTLVLYHQTKMSNHSWGSLFKKYYGEADWRKYLSKSIVAHTANIKTLPDVQLYGGRTVKKSEFESATPRSFEQELGLLMLSERDVGWCKMCGITVEEAMYQITNPEAYPITAEKCDPDVKTEGQKYTMEDVMNFMRRSNLDINDKILAEQCWSLSNSCGVLINPDDKERFVALTFKNNELVNDSSNANIDCRVGDYLVYAMSLFNCRSQKSQAGNISLYEKYCAYIRTYLENTDLYFTSPDRIPLLTGILYDFCKEYNIFYSTY 13039
Range 2: 12247 to 13038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
446.0 bits(967) | 0.0 | 201/264(76%) | 0/264(0%) | Minus/Minus |
Query 17 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRV 808 YVE*K LYSLQKS*RMPVS GILSG+VK KSV SK L+* QYFS*SE+LPACDF L LNRD+A*T+*S TRQS+FALLESL NSLFL VR T RSLSSGLI+TPHELD+DQHCS KILS +S+LERRMKF TSSI YF PSVFTSGSHFSA IG A GFV WY ASSTV+PHIL PTSRSL++ SPNSCSNDLG ADS SDF T+LPPYN* SG+ F A A +LL+RYF QSASP* FLNRL HEWFDIF+ *R S V Subject 12247 YVE*KILYSLQKS*RMPVSNGILSGEVKYKSVFSK*VLM*AQYFS*SEMLPACDF*LLQLNRDIA*TK*SPTRQSMFALLESLTNSLFLKVRATNRSLSSGLIKTPHELDRDQHCSAKILSFISRLERRMKFITSSIVYFCPSVFTSGSHFSAVIGYASGFVIWYIASSTVIPHILHQPTSRSLNIRSPNSCSNDLGVADSNSDFFTVLPPYN*TSGKVFMLAVWATMLLERYFLQSASP*YFLNRLPHEWFDIFVWW*RTSVV 13038
Range 3: 12254 to 13039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.8 bits(613) | 0.0 | 135/262(52%) | 0/262(0%) | Minus/Minus |
Query 24 VCGVEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES* 809 VCG++D +LF +++ENA +* YP+ R E *IG F V D+S IL ++RN+TRL LL ++*GH VN*+I +ATVY+ V +V+ VI + + ++ F I+G+NQN RI *RPTL + I I*V THEI ++FHRVFL S +I I FF DR VR+LV CL HS+ HL P H+ *++ S FLLE RS R K GL ++ST+VQL++ F+V V N R VF PICLPV FEQT P*VVRHL VE+* Subject 12254 VCGIKDIILFAEIIENAGE*RYPIGRSEI*IGIF*VSSDVSAILFVERNVTRLRLLTPTIE*GHSVN*VITHATVYVRVA*IVNQFVILKSESNKPFFIIGVNQNSARIG*RPTLFR*DFIIYI*VGTTHEIHHVFHRVFLPLSFHIWIAFFRCDRIRFRVRDLVHCLLHSYPAHLTPTHVPFT*HQKS*FLLERPRSRRFKFGLLHSSTAVQLNVRQSFYVSCVGYNALREVFPPICLPVVLFEQTSP*VVRHLRLVVEN* 13039
Range 4: 12396 to 13040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 109/215(51%) | 0/215(0%) | Minus/Minus |
Query 166 CMWSRRHCTLYKSRRECQ*VRVSCQAT*RINRYFPSTS*YEYNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIE 810 CMW++R+ TL ++ REC+*V VS + * INRYF S * + NT +AK YP TS + *IGT RKL N RDSL R +R* RY * *E + V Y R *S+ TN I+TN +FYH YL DA*NS LPS I Q H D IF L + GS* GTLP PQ TS P L V IPAR SE Q RTS QFY RT E Subject 12396 CMWNKRYYTLCRNHRECR*VTVSYREK*NINRYFLSKF*CKRNTFRRAKCYPLATSDSYN*IGT*RKLSNHPRDSLCSRCLNR*PIRYS*K*EQQTVLYHRG*SKLRTNWIETNTVPLRFYHLYLGWNDA*NSSRLPSCISAPQFSHLDRIFPL*SDTLQGS*FGTLPPPQLSRTSYTNPRPVHLTSEVLIPARTTSESPIQIRTSSQFYRRTTE 13040
Range 5: 12237 to 12344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 32/36(89%) | 0/36(0%) | Minus/Minus |
Query 7 GISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN 114 GISSNLPPR F*TDFPMSGSTSSS GRELA *LLN Subject 12237 GISSNLPPRSTF*TDFPMSGSTSSSGGRELAL*LLN 12344
Range 6: 12243 to 13040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
235.2 bits(507) | 0.0 | 135/266(51%) | 0/266(0%) | Plus/Plus |
Query 13 KLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAXXXXXXXXXXXXXPHT 810 +L * ST RCRTTHG+VCSK+ TGRQIG NT L+ L T T*K+ + +CT VEL* SP L+ +LR SSRN D+ * + W G RC *LW+RQ T SRT S KN I+M*+L+ +NTRWK ISCV T*I +I+ ++VGLY IR F*L P I+N L +IT+ T + T+ *TVA I *FT CPY RS +RV FR +SI L S T K+PIY S GY Y AFS KS +S PHT Subject 12243 ELQR*FSTTRRRCRTTHGEVCSKSTTGRQIGGNTSLRAL*PTQLT*KLCRTFSCTAVEL*RSPNLNRRLRGRSSRN*DF*C*VNGTWVGVRCAG*LWRRQCTKSRTLKRIRSQRKNAIQM*KLRGRNTRWKT**ISCVVPT*I*MIKS*RNSVGLYPIRAEF*LTPMIKNGLLLSLLRITNWLTIQATRT*TVAWVIT*FTLCPYSIVGVRSRKRVTFRSTKSIALTSELT*KIPIYISLLPIGYRYSPAFSMISAKSIISFIPHT 13040
Range 7: 12238 to 12786 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.0 bits(404) | 0.0 | 99/183(54%) | 0/183(0%) | Plus/Plus |
Query 8 FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RV 556 F+SY+ASSLP DEDVEPLMGKSVQK+LRGGRLEEIP+*++C + S+VRR*NC+EVR *+ SE++RAGI T K G+ DV +CG G+VP HEP S S KM S C++* +I DGR EFHASF RY+**N +LV I FV D* R * T S+ +*R+ Subject 12238 FKSYNASSLPPDEDVEPLMGKSVQKVLRGGRLEEIPL*EHCSPHS*HKNFAGRSVVRR*NCEEVRI*IGDSEVVRAGIRTSDVK*TGRGLV*DVRDNCGGGNVPNHEP*SVSDHSGKMRSRCEN*GAEIHDGRRDEFHASFQPRYK**NLSGTVLVSIQFVRSFD*PR**RTVCCSHF*E*RI 12786
Range 8: 12847 to 12996 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 25/50(50%) | 0/50(0%) | Plus/Plus |
Query 617 HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTYWHS 766 +VPI +EV G*+FAL +VL +Q +L KYRFI H + DT+T+ HS Subject 12847 YVPIQL*ESEVASG*HFALRKVLRLHQNLLRKYRFIFHFSR*DTVTHRHS 12996
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 8
Range 1: 12236 to 13027 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
547.3 bits(1188) | 0.0 | 217/264(82%) | 0/264(0%) | Plus/Plus |
Query 18 TRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 T L LY KMSNHSW SLFKK+YGEADW+KYLSKSI AH+A++K LPD QLYGGR V+KS+FES PRSFEQELGL +LSERDVGW KMCG+TVEEA YQ+TNP A+PI AEKCDPDVKTEGQKY+MEDV NFMR SNLD +D+IL EQCWSLSNSCGVLINPDDKERFV+LTFKNNEL+NDSSNANIDCRV DYLVYAMSLFN R+QKSQAGNISLYEKYC +IR YLE+TDL+FTSPDRIPLLTGILYDFCKEY++FYSTY Subject 12236 TTLVLYHQTKMSNHSWGSLFKKYYGEADWRKYLSKSIVAHTANIKTLPDVQLYGGRTVKKSEFESVTPRSFEQELGLLMLSERDVGWCKMCGITVEEAMYQITNPEAYPITAEKCDPDVKTEGQKYTMEDVMNFMRRSNLDINDKILAEQCWSLSNSCGVLINPDDKERFVALTFKNNELVNDSSNANIDCRVGDYLVYAMSLFNCRSQKSQAGNISLYEKYCAYIRTYLENTDLYFTSPDRIPLLTGILYDFCKEYNIFYSTY 13027
Range 2: 12235 to 13026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
442.8 bits(960) | 0.0 | 199/264(75%) | 0/264(0%) | Minus/Minus |
Query 17 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRV 808 YVE*K LYSLQKS*RMPVS GILSG+VK KSV SK L+* QYFS*SE+LPACDF L LNRD+A*T+*S TRQS+FALLESL NSLFL VR T RSLSSGLI+TPHELD+DQHCS KILS +S+LERRMKF TSS+ YF PSVFTSGSHFSA IG A GFV WY ASSTV+PHIL PTSRSL++ SPNSCSNDLG DS SDF T+LPPYN* SG+ F A A +LL+RYF QSASP* FLNRL HEWFDIF+ *R S V Subject 12235 YVE*KILYSLQKS*RMPVSNGILSGEVKYKSVFSK*VLM*AQYFS*SEMLPACDF*LLQLNRDIA*TK*SPTRQSMFALLESLTNSLFLKVRATNRSLSSGLIKTPHELDRDQHCSAKILSFISRLERRMKFITSSMVYFCPSVFTSGSHFSAVIGYASGFVIWYIASSTVIPHILHQPTSRSLNIRSPNSCSNDLGVTDSNSDFFTVLPPYN*TSGKVFMLAVWATMLLERYFLQSASP*YFLNRLPHEWFDIFVWW*RTSVV 13026
Range 3: 12242 to 13027 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
275.5 bits(595) | 0.0 | 132/262(50%) | 0/262(0%) | Minus/Minus |
Query 24 VCGVEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES* 809 VCG++D +L +++ENA +* YP+ R E IG F V D+S IL ++RN+TRL LL ++*GH VN*+I +ATVY+ V +V+ VI + + ++ F I+G+NQN RI *RPTL + I I*V THEI ++FH VFL S +I I FF DR VR+LV CL HS+ HL P H+ *++ S FLLE RS R K GL ++ST+VQL++ F+V V N R VF PICLPV FEQT P*VVRHL VE+* Subject 12242 VCGIKDIILLAEIIENAGE*RYPIGRSEIQIGIF*VSSDVSAILFVERNVTRLRLLTPTIE*GHSVN*VITHATVYVRVA*IVNQFVILKSESNKPFFIIGVNQNSARIG*RPTLFR*DFIIYI*VGTTHEIHHVFHGVFLPLSFHIWIAFFRCDRIRFRVRDLVHCLLHSYPAHLTPTHVPFT*HQKS*FLLERPRSHRFKFGLLHSSTAVQLNVRQSFYVSCVGYNALREVFPPICLPVVLFEQTSP*VVRHLRLVVEN* 13027
Range 4: 12384 to 13028 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 106/215(49%) | 0/215(0%) | Minus/Minus |
Query 166 CMWSRRHCTLYKSRRECQ*VRVSCQAT*RINRYFPSTS*YEYNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLPLPQSCHTSCPTPHLARLV*IVPIPARMISELQTQNRTSLQFYLRTIE 810 CMW++R+ T ++ REC+*V VS + * NRYF S * + NT +AK YP TS + *IGT RKL N RDSL R +R* RY * *E + V Y R *S+ TN I+TN +FYH YL DA*NS LP I Q H D IF L + GS* GTLP PQ TS P L V IPAR SE Q RTS QFY RT E Subject 12384 CMWNKRYYTPCRNHRECR*VTVSYREK*NTNRYFLSKF*CKRNTFRRAKCYPLATSDSYN*IGT*RKLSNHPRDSLCSRCLNR*PIRYS*K*EQQTVLYHRG*SKLRTNWIETNTVPLRFYHLYLGWNDA*NSSRLPWCISAPQFSHLDRIFPL*SDTLQGS*FGTLPPPQLSRTSYTNPRPVHLTSEVLIPARTTSESPIQIRTSSQFYRRTTE 13028
Range 5: 12225 to 12332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 32/36(89%) | 0/36(0%) | Minus/Minus |
Query 7 GISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN 114 GISSNLPPR F*TDFPMSGSTSSS GRELA *LLN Subject 12225 GISSNLPPRSTF*TDFPMSGSTSSSGGRELAL*LLN 12332
Range 6: 12231 to 13028 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 132/266(50%) | 0/266(0%) | Plus/Plus |
Query 13 KLLG*LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDYSY*ASEMWGGARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLLAXXXXXXXXXXXXXPHT 810 +L * ST RCRTTHG+VCSK+ TGRQIG NT L+ L T T*K+ + +CT VEL* SP L+ LR SSRN D+ * + W G RC *LW+RQ T SRT S KN I+M*+L+ +NT WK ISCV T*I +I+ ++VGLY IR F*L P I+N L +IT+ T + T+ *TVA I *FT CPY RS +RV FR +SI L S T K+PI S GY Y AFS +S +S PHT Subject 12231 ELQR*FSTTRRRCRTTHGEVCSKSTTGRQIGGNTSLRAL*PTQLT*KLCRTFSCTAVEL*RSPNLNR*LRGRSSRN*DF*C*VNGTWVGVRCAG*LWRRQCTKSRTLKRIRSQRKNAIQM*KLRGRNTPWKT**ISCVVPT*I*MIKS*RNSVGLYPIRAEF*LTPMIKNGLLLSLLRITNWLTIQATRT*TVAWVIT*FTLCPYSIVGVRSRKRVTFRSTKSIALTSELT*KIPICISLLPIGYRYSPAFSMISARSIISFIPHT 13028
Range 7: 12226 to 12774 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.8 bits(397) | 0.0 | 98/183(54%) | 0/183(0%) | Plus/Plus |
Query 8 FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTIHTKRARCGVGQDVWHDCGRGSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK*RV 556 F+SY+ASSLP DEDVEPLMGKSVQK+LRGGRLEEIP+*++C + S+VRR*NC+EVR *+ SE++RAGI T K G+ DV +CG G+VP HEP S S KM S C++* +I GR EFHASF RY+**N +LV I FV D* R * T S+ +*R+ Subject 12226 FKSYNASSLPPDEDVEPLMGKSVQKVLRGGRLEEIPL*EHCSPHS*HKNFAGRSVVRR*NCEEVRI*IGDSEVVRAGIRTSDVK*TGRGLV*DVRDNCGGGNVPNHEP*SVSDHSGKMRSRCEN*GAEIHHGRRDEFHASFQPRYK**NLSGTVLVSIQFVRSFD*PR**RTVCCSHF*E*RI 12774
Range 8: 12835 to 12984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 24/50(48%) | 0/50(0%) | Plus/Plus |
Query 617 HVPI*PKSTEVTGG*YFAL*EVLYSYQEVLGKYRFILHVA*QDTLTYWHS 766 +VPI +EV G*+FAL +VL +Q +L KYRF+ H + DT+T+ HS Subject 12835 YVPIQL*ESEVASG*HFALRKVLRLHQNLLRKYRFVFHFSR*DTVTHRHS 12984
Grapevine leafroll associated virus 2 isolate PG11 heat shock protein 70, heat shock protein 90, minor coat protein, major coat protein, and P19 genes, complete cds
Sequence ID: EF012720.1 Length: 5148 Number of Matches: 11
Range 1: 1694 to 2488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
554.6 bits(1204) | 0.0 | 218/265(82%) | 0/265(0%) | Plus/Plus |
Query 15 VTRLALYRWMKMSNHSWESLFKKFYGEADWKKYLSKSIAAHSADVKNLPDTQLYGGRIVRKSDFESAAPRSFEQELGLFILSERDVGWGKMCGMTVEEAAYQLTNPNAFPIVAEKCDPDVKTEGQKYSMEDVENFMRLSNLDTSDRILVEQCWSLSNSCGVLINPDDKERFVSLTFKNNELINDSSNANIDCRVSDYLVYAMSLFNQRAQKSQAGNISLYEKYCTHIRKYLESTDLFFTSPDRIPLLTGILYDFCKEYSVFYSTY 809 VT L LYRW +MSNHSW SLFKKFYGEADWKKYLS+SI H+ VKNLPD QLYGGRIV+KSDFESAAPRSFEQELGL L ER+VGW KMCG++VEEA YQLTNP A+P+ AEKCDPDVKTEGQKY+M+DV NFMR S LD D++L EQCWSLSNSCGVLINPDDKERFV+LTFKNNEL+NDSSNANIDCRVSDYLVYAMSLFN R QKSQAGN+SLYE+YC +IR YLESTDL+FTSP+RIPLLTGILYDFCKEY+VFYSTY Subject 1694 VTPLVLYRWTRMSNHSWGSLFKKFYGEADWKKYLSRSIVVHTTSVKNLPDAQLYGGRIVKKSDFESAAPRSFEQELGLLTLCEREVGWSKMCGISVEEAMYQLTNPEAYPVTAEKCDPDVKTEGQKYTMDDVVNFMRSSKLDVDDKVLAEQCWSLSNSCGVLINPDDKERFVALTFKNNELVNDSSNANIDCRVSDYLVYAMSLFNSRTQKSQAGNVSLYERYCAYIRTYLESTDLYFTSPNRIPLLTGILYDFCKEYNVFYSTY 2488
Range 2: 1693 to 2487 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
442.3 bits(959) | 0.0 | 200/265(75%) | 0/265(0%) | Minus/Minus |
Query 14 YVE*KTLYSLQKS*RMPVSKGILSGDVKNKSVLSKYFLI*VQYFS*SEILPACDFCALWLNRDMA*TR*SLTRQSIFALLESLINSLFLNVRDTKRSLSSGLIRTPHELDKDQHCSTKILSLVSKLERRMKFSTSSIEYFWPSVFTSGSHFSATIGKALGFVSWYAASSTVMPHILPHPTSRSLSMNSPNSCSNDLGAADSKSDFLTILPPYN*VSGRFFTSAECAAILLDRYFFQSASP*NFLNRLSHEWFDIFIQR*RASRVT 808 YVE*KTLYSLQKS*R+PVS GIL G+VK KSVLSK L+* QY S*SE LPACDF L L RD+A*T+*SLTRQS+FALLESL NSLFLNVR T SLSSGLIRTPHELD+DQHCS K LS S L+ RMKF+TSSI YF PSV TSGSHFSA G A GFVSWY ASST +PHIL PTSRS ++N+P+SCSNDLGAADSKSDF TILPPYN* SG+F T +LL+RYFFQSASP*NFLNRL HEWFDI +QR*R S VT Subject 1693 YVE*KTLYSLQKS*RIPVSNGILLGEVKYKSVLSK*VLM*AQYLS*SETLPACDF*VLELKRDIA*TK*SLTRQSMFALLESLTNSLFLNVRATNLSLSSGLIRTPHELDRDQHCSAKTLSSTSNLDERMKFTTSSIVYFCPSVLTSGSHFSAVTGYASGFVSWYIASSTDIPHILLQPTSRSHNVNNPSSCSNDLGAADSKSDFFTILPPYN*ASGKFLTLVV*TTMLLERYFFQSASP*NFLNRLPHEWFDILVQR*RTSGVT 2487
Range 3: 1694 to 2488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
282.4 bits(610) | 0.0 | 136/265(51%) | 0/265(0%) | Minus/Minus |
Query 15 VCGVEDTVLFTKVVENASK*GYPVRRREE*IGTFQVLPDMSTILLIKRNITRL*LLCSLVK*GHGVN*IIAYATVYICVTRVVD*LVIFERKRHETFLIVGINQNPTRIR*RPTLLYQNSITRI*VRKTHEILNIFHRVFLAFSLYIRITFFSYDRKSIGVRELVRCLFHSHATHLAPPHISLA*YE*SQFLLE*SRSCRLKIGLPYNSTSVQLSIW*IFHVRGVCGNTFR*VFLPICLPVKFFEQTFP*VVRHLHPTVES*PSN 809 V GV++ VL KV+EN SK YPV R E + FQV D+S I I+RN+TRL LL S ++ GH VN*+I +AT+Y+ V V++ ++F+R+ HE+FLIV IN NP + *RP L N I +* R HEI ++ HR+FL FSL +RITFFS D GVRELV L + + H P + * +* QFLLE*SR C K+G +NST+VQLS+ + + GV N R VFLPICLPV+ FEQT P*VVRH P VE+* N Subject 1694 VRGVKNIVLLAKVIENTSKQRYPVGRGEVQVSAFQVSSDVSAIPFIERNVTRLRLLSSRIEKGHSVN*VITHATIYVRVA*VINQFIVFKREGHESFLIVRIN*NPA*VG*RPALFR*NFIIYV*FR*AHEIHHVIHRIFLPFSLNVRITFFSSDWICFGVRELVHRLLYGYPAHFTPAYFPFT*RQ*PQFLLE*SRCCGFKVGFLHNSTAVQLSVRQVLNAGGVNHNAPREVFLPICLPVELFEQTSP*VVRHPRPAVEN*RCN 2488
Range 4: 1956 to 2438 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.5 bits(272) | 0.0 | 74/161(46%) | 0/161(0%) | Plus/Plus |
Query 277 GARCVA*LWKRQRTNSRTPMLFLS*LKNVIRM*RLKAKNTRWKMLRISCVFLT*IRVIEFW*SNVGLYLIRVGF*LIPTIRNVSCLLRSKITS*STTRVTQI*TVA*AII*FTPCPYLTKEHRSHRRVIFRFMRSIVLISGSTWKVPIYSSRRLTGYPYLL 759 G +C +R+ TNSRTP S LKNVIR RLK +N RW ISC L * +I+F ++ GLY GF*LI TIR S R K + T+ T+ * VA* I *FT CP+ E +S +RV FR M+ I L S TWK +S TGY LL Subject 1956 GVKCAGYP*RRRCTNSRTPKHIQSLLKNVIRTLRLKGRNIRWMTW*ISCAHLN*T*MIKF*RNSAGLYPTHAGF*LILTIRKDSWPSRLKTMNWLMTQATRT*IVA*VIT*FTLCPFSILELKSRKRVTFRSMKGIALTSELTWKALTCTSPLPTGYRCLL 2438
Range 5: 1687 to 1929 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 55/81(68%) | 0/81(0%) | Plus/Plus |
Query 8 FRSYSASSLPLDEDVEPLMGKSVQKILRGGRLEEIPI*KYCRTLRGREKSTRYSIVRR*NCKEVRF*VCSSEIIRAGIGTI 250 F+SY+ASSLPLDEDVEPLMGKSVQK+LRGGRLEEIP+*++C + R + S+VRR*NC+E+R *+ S+EIIRAG G I Subject 1687 FKSYTASSLPLDEDVEPLMGKSVQKVLRGGRLEEIPL*EHCGSHHQR*ELAGRSVVRR*NCEEIRL*IRSTEIIRAGTGVI 1929
Range 6: 1986 to 2489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.0 bits(308) | 0.0 | 83/168(49%) | 0/168(0%) | Minus/Minus |
Query 307 CMWSRRHCTLYKSRRECQ*VRVSCQAT*RINRYFPSTS*YEYNTSHKAKYYPPVTSVLFG*IGTWRKLDNRLRDSLYLRYSSR*LTRYF*T*ETRNVPYRRD*SEPHTN*IKTNIALPKFYHSYLS*KDA*NSQHLPSSIFGLQSLHPDHIFQLR*EKHWGS*VGTLP 810 C WS++HCT KS RE Q* VSC * ++ FPS * + NT H+AK YP T * GT RKL N RD+L R S * F*T* R PYR+D* EP + I+T+ K YH L * A*NS PS I LQS PDHIFQ + GS*VGT P Subject 1986 CTWSKKHCTPCKSHREYQ*ATVSCWER*STSQCFPSKF*CKRNTFHRAKRYPLATFEF*N*KGT*RKLSNHSRDNLCSRCLSH*PIHCF*T*GPRIFPYRQD*LEPRMSWIETSTVPLKLYHLRLI*MSA*NSPRHPSYISALQS*RPDHIFQQ*LDMLRGS*VGTSP 2489
Range 7: 1686 to 1793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 32/36(89%) | 0/36(0%) | Minus/Minus |
Query 7 GISSNLPPRKIF*TDFPMSGSTSSSNGRELAE*LLN 114 GISSNLPPR+ F*TDFPMSGSTSSS+GRELA *LLN Subject 1686 GISSNLPPRRTF*TDFPMSGSTSSSSGRELAV*LLN 1793
Range 8: 1845 to 1928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 18/28(64%) | 0/28(0%) | Minus/Minus |
Query 166 IVPIPARMISELQTQNRTSLQFYLRTIE 249 I P+PARMIS L+ Q+R S QFY RT E Subject 1845 ITPVPARMISVLRIQSRISSQFYRRTTE 1928
Range 9: 1704 to 1928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 46/75(61%) | 0/75(0%) | Plus/Plus |
Query 25 *LSTVG*RCRTTHGKVCSKNFTGRQIGRNTYLKVLPHTPRT*KIYQILNCTEVEL*GSPILSLQLRDHSSRNWDY 249 * ST G CRTTHG+VCSK+ TGRQIGRNT L L TP + + L+CT VEL* +P L+ Q RDHSSRNW Y Subject 1704 *FSTAGRGCRTTHGEVCSKSSTGRQIGRNTSLGALWFTPPALRTCRTLSCTAVEL*RNPTLNPQHRDHSSRNWGY 1928
Range 10: 1987 to 2226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 42/80(52%) | 0/80(0%) | Plus/Plus |
Query 308 GSVPTHEPQCFSYRS*KM*SGCKD*RPKILDGRC*EFHASF*LRYE**NFGRAMLVFI*FVWGSD*SRR*GTFRVSYVQK 547 G VPTHEP+ S *KM*SG D*R +I DG EFHA *+R **+F +LV I + GS+*S R*G R +V K Subject 1987 GDVPTHEPRSISSHC*KM*SGR*D*RAEIYDG*RGEFHALI*IRRR**SFSGTVLVSIQLMRGSN*S*R*GKIRGPHV*K 2226
Nucleotide Sequence (540 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
427.7 | 2401.3 | 30% | 5.752e-118 | 97% | DQ286725.2 | |
413.0 | 2325.2 | 30% | 1.492e-113 | 94% | AY456132.1 | |
228.3 | 1459.8 | 33% | 4.467e-90 | 51% | NC_004724.1 | |
228.3 | 1459.8 | 33% | 4.467e-90 | 51% | AF314061.1 | |
228.3 | 1465.3 | 33% | 4.467e-90 | 51% | JX513891.1 |
Alignments
Grapevine leafroll associated virus 2, complete genome
Sequence ID: DQ286725.2 Length: 16535 Number of Matches: 8
Range 1: 10314 to 10850 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
427.7 bits(927) | 0.0 | 174/179(97%) | 0/179(0%) | Plus/Plus |
Query 2 IHCYPQLWCNCMTYTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYLADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPFV 538 IHC PQLWC+CMTYTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLY ADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CT RK*KARSLGT*NVGWVVIQVTLENTSIA*NR TPFV Subject 10314 IHCCPQLWCDCMTYTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYPADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTMRK*KARSLGT*NVGWVVIQVTLENTSIA*NRTTPFV 10850
Range 2: 10314 to 10850 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
408.4 bits(885) | 0.0 | 176/179(98%) | 0/179(0%) | Minus/Minus |
Query 2 DERSSAVSSDRSILQSYLNHNPPNVXXXXXXXXXXXSCASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCVRHAIAPQLWITMD 538 DERSSAVSSDRSILQSYLNHNPPNVLSP*RTSLLLS CASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMIS+IKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCVRHAIAPQLW TMD Subject 10314 DERSSAVSSDRSILQSYLNHNPPNVLSP*RTSLLLSHCASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISRIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCVRHAIAPQLWTTMD 10850
Range 3: 10315 to 10851 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.3 bits(876) | 0.0 | 176/179(98%) | 0/179(0%) | Minus/Minus |
Query 3 RRTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*HTMCTSCNCTTAVDNNG 539 RRTE* GFKRSKYSPKLLESQPTQRFKSLKNEPFTF LCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*HTMCTSCN TTAVDNNG Subject 10315 RRTE*CGFKRSKYSPKLLESQPTQRFKSLKNEPFTFALCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*HTMCTSCNRTTAVDNNG 10851
Range 4: 10313 to 10852 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.9 bits(873) | 0.0 | 175/180(97%) | 0/180(0%) | Minus/Minus |
Query 1 QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAR*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNVYVMQLHHSCG*QWI 540 QTNGV RFQAIEVFSKVT*ITTHPTF*VPKERAFYFR+VHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SA *RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNVYVMQ HHSCG QWI Subject 10313 QTNGVVRFQAIEVFSKVT*ITTHPTF*VPKERAFYFRIVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAG*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNVYVMQSHHSCGQQWI 10852
Range 5: 10493 to 10852 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
294.3 bits(636) | 0.0 | 118/120(98%) | 0/120(0%) | Plus/Plus |
Query 181 EAHTRFRTRPSVVEVSQPLCDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL 540 EAHTRFRTRPSVVEVSQPLCDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHN+KVKGSFFRDLKRWVGCDSSNFGEYFDRLKP YSVRL Subject 10493 EAHTRFRTRPSVVEVSQPLCDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNAKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPHYSVRL 10852
Range 6: 10313 to 10429 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
98.7 bits(209) | 0.0 | 38/39(97%) | 0/39(0%) | Plus/Plus |
Query 1 YPLLSTAVVQLHDVHIVCHRVNILWTRFYSLSVCTCSTK 117 YPLLSTAVV+LHDVHIVCHRVNILWTRFYSLSVCTCSTK Subject 10313 YPLLSTAVVRLHDVHIVCHRVNILWTRFYSLSVCTCSTK 10429
Range 7: 10315 to 10749 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.1 bits(712) | 0.0 | 143/145(99%) | 0/145(0%) | Plus/Plus |
Query 3 SIVIHSCGAIA*RTHCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDAQLES 437 SIV+HSCGAIA*RTHCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDAQ ES Subject 10315 SIVVHSCGAIA*RTHCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDAQCES 10749
Grapevine leafroll associated virus 2 strain Alfie membrane associated protein P6 (P6) and Hsp70 like protein genes, complete cds
Sequence ID: AY456132.1 Length: 2466 Number of Matches: 8
Range 1: 141 to 677 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
413.0 bits(895) | 0.0 | 169/179(94%) | 0/179(0%) | Plus/Plus |
Query 2 IHCYPQLWCNCMTYTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYLADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPFV 538 IHCYPQLWCN MTYTLCVIV*ISYGPGFTV*VFVLAQPSCFC+NFRLYL DHSRDQIFSQKRTRGFEHDRP WRFLNRCVIFTKWLFSV*TSARLFQ SACTRMVKFTHISKITPRIFR TSTCSL+PTTWFSVMKPNH*CTTRK*KARSLGT*NVGWV +QVTLENTSIA*NR TPFV Subject 141 IHCYPQLWCNRMTYTLCVIV*ISYGPGFTV*VFVLAQPSCFCYNFRLYLXDHSRDQIFSQKRTRGFEHDRP*WRFLNRCVIFTKWLFSV*TSARLFQRSACTRMVKFTHISKITPRIFRLTSTCSLKPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVAVQVTLENTSIA*NRTTPFV 677
Range 2: 142 to 678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
394.7 bits(855) | 0.0 | 172/179(96%) | 0/179(0%) | Minus/Minus |
Query 3 RRTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*HTMCTSCNCTTAVDNNG 539 RRTE* GFKRSKYSPKLLE QPTQRFKSLKNEPFTF LCISDSAS*PKTMLLVSENR*R VGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQ DKDESY KNSLVEQVQTLKL*NLVHKIFTR*HTMCTSC+CTTAVDNNG Subject 142 RRTE*CGFKRSKYSPKLLEPQPTQRFKSLKNEPFTFALCISDSAS*PKTMLLVSENR*R*VGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS*RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQXDKDESYSKNSLVEQVQTLKL*NLVHKIFTR*HTMCTSCDCTTAVDNNG 678
Range 3: 141 to 677 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
391.5 bits(848) | 0.0 | 171/179(96%) | 0/179(0%) | Minus/Minus |
Query 2 DERSSAVSSDRSILQSYLNHNPPNVXXXXXXXXXXXSCASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCVRHAIAPQLWITMD 538 DERSSAVSSDRSILQSYLN NPPNVLSP*RTSLLLS CASVIRLHNRKPCCW QRTGRG SEYTRSYFAYMSKLYHPCTRR LKKSCRSLNRKQPFRKDHTTVEKPP RTVVFETSCALLRKDLITRMI KIKTKV+AKTAWLSKYKHSNCKTWSIRYLHDDTQCVRHAIAPQLWITMD Subject 141 DERSSAVSSDRSILQSYLNRNPPNVLSP*RTSLLLSRCASVIRLHNRKPCCWFQRTGRGKSEYTRSYFAYMSKLYHPCTRRPLKKSCRSLNRKQPFRKDHTTVEKPPLRTVVFETSCALLRKDLITRMIXKIKTKVIAKTAWLSKYKHSNCKTWSIRYLHDDTQCVRHAIAPQLWITMD 677
Range 4: 140 to 679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.4 bits(837) | 0.0 | 170/180(94%) | 0/180(0%) | Minus/Minus |
Query 1 QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAR*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNVYVMQLHHSCG*QWI 540 QTNGV RFQAIEVFSKVT* THPTF*VPKERAFYFRVVHQ*FGFITENHVVG REQVEV RNIRGVILLI*VNFTILVHAD *KSRAEV*TENNHFVKITQRLRNLH+GRSCSKPRVRFCEKI*SRE*S R*RRKL QKQLG*ASTNTQTVKPGP*DIYTMTHNVYVM+LHHSCG*QWI Subject 140 QTNGVVRFQAIEVFSKVT*TATHPTF*VPKERAFYFRVVHQ*FGFITENHVVGFREQVEVSRNIRGVILLI*VNFTILVHADR*KSRAEV*TENNHFVKITQRLRNLHYGRSCSKPRVRFCEKI*SRE*SXR*RRKL*QKQLG*ASTNTQTVKPGP*DIYTMTHNVYVMRLHHSCG*QWI 679
Range 5: 320 to 679 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.1 bits(629) | 0.0 | 117/120(98%) | 0/120(0%) | Plus/Plus |
Query 181 EAHTRFRTRPSVVEVSQPLCDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVRL 540 EAHTRFRTRPSVVEVSQPLCDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHN+KVKGSFFRDLKRWVGC SSNFGEYFDRLKP YSVRL Subject 320 EAHTRFRTRPSVVEVSQPLCDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNAKVKGSFFRDLKRWVGCGSSNFGEYFDRLKPHYSVRL 679
Range 6: 140 to 256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.7 bits(207) | 0.0 | 38/39(97%) | 0/39(0%) | Plus/Plus |
Query 1 YPLLSTAVVQLHDVHIVCHRVNILWTRFYSLSVCTCSTK 117 YPLLSTAVVQ HDVHIVCHRVNILWTRFYSLSVCTCSTK Subject 140 YPLLSTAVVQSHDVHIVCHRVNILWTRFYSLSVCTCSTK 256
Range 7: 142 to 576 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.9 bits(681) | 0.0 | 139/145(96%) | 0/145(0%) | Plus/Plus |
Query 3 SIVIHSCGAIA*RTHCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDAQLES 437 SIVIHSCGAIA*RTHCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFI LIIRVIKSFRRSAHEVSNTTVR GGFSTVV*SLRNGCFRFRLRHDFFN LRVQGW*SLLI*AK*LRVYSD+PLPVL*+QQHGFRL*SRITDAQ ES Subject 142 SIVIHSCGAIA*RTHCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFIXLIIRVIKSFRRSAHEVSNTTVRSGGFSTVV*SLRNGCFRFRLRHDFFNGLRVQGW*SLLI*AK*LRVYSDLPLPVL*NQQHGFRL*SRITDAQRES 576
Grapevine rootstock stem lesion associated virus, complete genome
Sequence ID: NC_004724.1 Length: 16527 Number of Matches: 15
Range 1: 10537 to 10836 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 89/100(89%) | 0/100(0%) | Plus/Plus |
Query 238 CDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVR 537 C + EMVVFGLDFGTTFSTVCVYKDGKVYS+KQNNSAYIPTYLYLFSETN+MVFGYEAESLMHN+KV+GSFFRDLKRWVGCDSSNF +YFDRLKP Y+VR Subject 10537 CVICEMVVFGLDFGTTFSTVCVYKDGKVYSFKQNNSAYIPTYLYLFSETNHMVFGYEAESLMHNAKVRGSFFRDLKRWVGCDSSNFSDYFDRLKPHYAVR 10836
Range 2: 10346 to 10543 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 52/66(79%) | 0/66(0%) | Plus/Plus |
Query 45 HCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV* 242 H V C +MDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRR+ HE + VRG GFSTVV* Subject 10346 HDVCHCIDIMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRNVHETPISAVRGQGFSTVV* 10543
Range 3: 10314 to 10370 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/19(58%) | 0/19(0%) | Plus/Plus |
Query 11 YPQLWCNCMTYTLCVIV*I 67 +P+LW + +TYT+CV V*I Subject 10314 FPRLWDDHVTYTMCVTV*I 10370
Range 4: 10548 to 10835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 84/96(88%) | 0/96(0%) | Minus/Minus |
Query 249 RTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS 536 RT * GF+RSK S KLLESQPTQRFKSLK EP TF LCISDSAS*PKTM LVSE R*RYVG+YAELFCL E*TLPSLYTQTVEKVVPKSKPKTTIS Subject 10548 RTA*CGFRRSK*SLKLLESQPTQRFKSLKKEPLTFALCISDSAS*PKTM*LVSEKR*RYVGMYAELFCLNE*TLPSLYTQTVEKVVPKSKPKTTIS 10835
Range 5: 10352 to 10546 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 40/65(62%) | 0/65(0%) | Minus/Minus |
Query 51 RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*H 245 +SHN ET TTDGR + V SA+RF+HAND+Q++DE Y KN LVEQ+QTL+L NLVH I+T H Subject 10352 KSHNSRETLTTDGRYWSFVYVSAERFNHANDEQNEDECYCKNRLVEQIQTLELQNLVHNIYTVTH 10546
Range 6: 10316 to 10372 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 11/19(58%) | 0/19(0%) | Minus/Minus |
Query 13 DIYTMTHNVYVMQLHHSCG 69 +IYT+TH VYV HS G Subject 10316 NIYTVTHIVYVT*SSHSRG 10372
Range 7: 10537 to 10839 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 56/101(55%) | 0/101(0%) | Minus/Minus |
Query 238 QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKIT 540 + N + QAI+V +KV + THP F*VPKERA + ++HQ*FGFIT+NHV+ E+VEV RN+R ++L *VN TI +HAD KSR E+*T+NNHF T Subject 10537 RANRIVWLQAIKVVTKVAGVATHPAF*VPKERASHLCIMHQ*FGFITKNHVISFGEKVEVCRNVRRIVLFE*VNLTIFIHADRRKSRTEI*TKNNHFANHT 10839
Range 8: 10344 to 10547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 41/68(60%) | 0/68(0%) | Minus/Minus |
Query 43 KITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAR*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNV 246 +ITQ+ RN HGR + RVRFC KI*SRE* A *RR L QK G*A T+T+T +PGP* +Y+ TH V Subject 10344 QITQQSRNPDHGRPILEFRVRFCGKI*SRE**AE*RRMLLQKPPG*ADTDTRTAEPGP*YLYSDTHRV 10547
Range 9: 10544 to 10834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 56/97(58%) | 0/97(0%) | Plus/Plus |
Query 245 FTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPF 535 F KWLF V* S RLF+ SAC +MV+FTH +K R FR TST S + TWF VMKPNH*C ++*+A SLGT*N GWV TL T IA*+ F Subject 10544 FAKWLFLV*ISVRLFRRSACIKMVRFTHSNKTILRTFRHTSTFSPKLITWFLVMKPNH*CIMQR*EALSLGT*NAGWVATPATLVTTLIA*SHTMRF 10834
Range 10: 10342 to 10569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 39/76(51%) | 0/76(0%) | Plus/Plus |
Query 41 YTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYLADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV 268 +T CV + YGPG V V V AQP FC+N RL+ A HSRD IF QKRTR RPW FL+ CVI +F + Subject 10342 HTRCVSLYRYYGPGSAVRVSVSAQPGGFCNNIRLHSAHHSRD*IFPQKRTRNSNIGRPWSGFLDCCVICEMVVFGL 10569
Range 11: 10527 to 10724 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 40/66(61%) | 0/66(0%) | Plus/Plus |
Query 228 STVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDA 425 S ++ LRNGCF FR R+DFF+ LRV W* LLI K V+SD+PLP L + HGF L*SRITDA Subject 10527 SRLLCDLRNGCFWFRFRYDFFDGLRV*RW*GLLIQTKQFCVHSDIPLPFLRN*SHGFWL*SRITDA 10724
Range 12: 10335 to 10418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 16/28(57%) | 0/28(0%) | Plus/Plus |
Query 34 HDVHIVCHRVNILWTRFYSLSVCTCSTK 117 H + +C V ILWTRF S SVC CST+ Subject 10335 HVTYTMCVTV*ILWTRFCSSSVCICSTR 10418
Range 13: 10482 to 10547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 13/22(59%) | 0/22(0%) | Plus/Plus |
Query 181 EAHTRFRTRPSVVEVSQPLCDL 246 E +T+ + RPSVV VS+ LCDL Subject 10482 ETYTKLQYRPSVVRVSRLLCDL 10547
Range 14: 10342 to 10590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 46/83(55%) | 0/83(0%) | Minus/Minus |
Query 41 KKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCV 289 +KS + K +HTTVEKP PRT SC LRKDLITRM+S++KT V+AKTAWLS+Y+HSNC+TWSI + T C+ Subject 10342 RKSRTEI*TKNNHFANHTTVEKP*PRTADIGVSCTFLRKDLITRMMSRMKTNVIAKTAWLSRYRHSNCRTWSIISIQ*HTSCM 10590
Range 15: 10526 to 10723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 41/66(62%) | 0/66(0%) | Minus/Minus |
Query 227 ASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVE 424 ASVIRLHN+KPC +R GRG SE T++ F MSK YH TRR KKS R+LN+KQPFRK H + E Subject 10526 ASVIRLHNQKPCD*FRRKGRGMSECTQNCFV*MSKPYHLYTRRPSKKSYRNLNQKQPFRKSHNSRE 10723
Grapevine rootstock stem lesion associated virus methyltransferase/helicase polyprotein, RNA dependent RNA polymerase, p6, HSP70 like protein, HSP90 like protein, coat protein duplicate, coat protein, p19, and p24 genes, complete cds
Sequence ID: AF314061.1 Length: 16527 Number of Matches: 15
Range 1: 10537 to 10836 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 89/100(89%) | 0/100(0%) | Plus/Plus |
Query 238 CDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVR 537 C + EMVVFGLDFGTTFSTVCVYKDGKVYS+KQNNSAYIPTYLYLFSETN+MVFGYEAESLMHN+KV+GSFFRDLKRWVGCDSSNF +YFDRLKP Y+VR Subject 10537 CVICEMVVFGLDFGTTFSTVCVYKDGKVYSFKQNNSAYIPTYLYLFSETNHMVFGYEAESLMHNAKVRGSFFRDLKRWVGCDSSNFSDYFDRLKPHYAVR 10836
Range 2: 10346 to 10543 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 52/66(79%) | 0/66(0%) | Plus/Plus |
Query 45 HCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV* 242 H V C +MDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRR+ HE + VRG GFSTVV* Subject 10346 HDVCHCIDIMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRNVHETPISAVRGQGFSTVV* 10543
Range 3: 10314 to 10370 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/19(58%) | 0/19(0%) | Plus/Plus |
Query 11 YPQLWCNCMTYTLCVIV*I 67 +P+LW + +TYT+CV V*I Subject 10314 FPRLWDDHVTYTMCVTV*I 10370
Range 4: 10548 to 10835 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 84/96(88%) | 0/96(0%) | Minus/Minus |
Query 249 RTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS 536 RT * GF+RSK S KLLESQPTQRFKSLK EP TF LCISDSAS*PKTM LVSE R*RYVG+YAELFCL E*TLPSLYTQTVEKVVPKSKPKTTIS Subject 10548 RTA*CGFRRSK*SLKLLESQPTQRFKSLKKEPLTFALCISDSAS*PKTM*LVSEKR*RYVGMYAELFCLNE*TLPSLYTQTVEKVVPKSKPKTTIS 10835
Range 5: 10352 to 10546 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 40/65(62%) | 0/65(0%) | Minus/Minus |
Query 51 RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*H 245 +SHN ET TTDGR + V SA+RF+HAND+Q++DE Y KN LVEQ+QTL+L NLVH I+T H Subject 10352 KSHNSRETLTTDGRYWSFVYVSAERFNHANDEQNEDECYCKNRLVEQIQTLELQNLVHNIYTVTH 10546
Range 6: 10316 to 10372 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 11/19(58%) | 0/19(0%) | Minus/Minus |
Query 13 DIYTMTHNVYVMQLHHSCG 69 +IYT+TH VYV HS G Subject 10316 NIYTVTHIVYVT*SSHSRG 10372
Range 7: 10537 to 10839 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 56/101(55%) | 0/101(0%) | Minus/Minus |
Query 238 QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKIT 540 + N + QAI+V +KV + THP F*VPKERA + ++HQ*FGFIT+NHV+ E+VEV RN+R ++L *VN TI +HAD KSR E+*T+NNHF T Subject 10537 RANRIVWLQAIKVVTKVAGVATHPAF*VPKERASHLCIMHQ*FGFITKNHVISFGEKVEVCRNVRRIVLFE*VNLTIFIHADRRKSRTEI*TKNNHFANHT 10839
Range 8: 10344 to 10547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 41/68(60%) | 0/68(0%) | Minus/Minus |
Query 43 KITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAR*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNV 246 +ITQ+ RN HGR + RVRFC KI*SRE* A *RR L QK G*A T+T+T +PGP* +Y+ TH V Subject 10344 QITQQSRNPDHGRPILEFRVRFCGKI*SRE**AE*RRMLLQKPPG*ADTDTRTAEPGP*YLYSDTHRV 10547
Range 9: 10544 to 10834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 56/97(58%) | 0/97(0%) | Plus/Plus |
Query 245 FTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPF 535 F KWLF V* S RLF+ SAC +MV+FTH +K R FR TST S + TWF VMKPNH*C ++*+A SLGT*N GWV TL T IA*+ F Subject 10544 FAKWLFLV*ISVRLFRRSACIKMVRFTHSNKTILRTFRHTSTFSPKLITWFLVMKPNH*CIMQR*EALSLGT*NAGWVATPATLVTTLIA*SHTMRF 10834
Range 10: 10342 to 10569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 39/76(51%) | 0/76(0%) | Plus/Plus |
Query 41 YTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYLADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV 268 +T CV + YGPG V V V AQP FC+N RL+ A HSRD IF QKRTR RPW FL+ CVI +F + Subject 10342 HTRCVSLYRYYGPGSAVRVSVSAQPGGFCNNIRLHSAHHSRD*IFPQKRTRNSNIGRPWSGFLDCCVICEMVVFGL 10569
Range 11: 10527 to 10724 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 40/66(61%) | 0/66(0%) | Plus/Plus |
Query 228 STVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDA 425 S ++ LRNGCF FR R+DFF+ LRV W* LLI K V+SD+PLP L + HGF L*SRITDA Subject 10527 SRLLCDLRNGCFWFRFRYDFFDGLRV*RW*GLLIQTKQFCVHSDIPLPFLRN*SHGFWL*SRITDA 10724
Range 12: 10335 to 10418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 16/28(57%) | 0/28(0%) | Plus/Plus |
Query 34 HDVHIVCHRVNILWTRFYSLSVCTCSTK 117 H + +C V ILWTRF S SVC CST+ Subject 10335 HVTYTMCVTV*ILWTRFCSSSVCICSTR 10418
Range 13: 10482 to 10547 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 13/22(59%) | 0/22(0%) | Plus/Plus |
Query 181 EAHTRFRTRPSVVEVSQPLCDL 246 E +T+ + RPSVV VS+ LCDL Subject 10482 ETYTKLQYRPSVVRVSRLLCDL 10547
Range 14: 10342 to 10590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 46/83(55%) | 0/83(0%) | Minus/Minus |
Query 41 KKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCV 289 +KS + K +HTTVEKP PRT SC LRKDLITRM+S++KT V+AKTAWLS+Y+HSNC+TWSI + T C+ Subject 10342 RKSRTEI*TKNNHFANHTTVEKP*PRTADIGVSCTFLRKDLITRMMSRMKTNVIAKTAWLSRYRHSNCRTWSIISIQ*HTSCM 10590
Range 15: 10526 to 10723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 41/66(62%) | 0/66(0%) | Minus/Minus |
Query 227 ASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVE 424 ASVIRLHN+KPC +R GRG SE T++ F MSK YH TRR KKS R+LN+KQPFRK H + E Subject 10526 ASVIRLHNQKPCD*FRRKGRGMSECTQNCFV*MSKPYHLYTRRPSKKSYRNLNQKQPFRKSHNSRE 10723
Grapevine leafroll associated virus 2 isolate GLV2 1050 02 polyprotein (ORF1a), RNA dependent RNA polymerase (ORF1b), 6.3 kDa small hydrophobic protein (ORF2), putative heat shock protein 70 (ORF3), 63 kDa putative cell to cell movemennt protein (ORF4), minor capsid protein (CPm), major capsid protein (CP), 19 kDa protein (ORF7), and 24 kDa protein (ORF8) genes, complete cds
Sequence ID: JX513891.1 Length: 16489 Number of Matches: 15
Range 1: 10525 to 10824 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 89/100(89%) | 0/100(0%) | Plus/Plus |
Query 238 CDLYEMVVFGLDFGTTFSTVCVYKDGKVYSYKQNNSAYIPTYLYLFSETNNMVFGYEAESLMHNSKVKGSFFRDLKRWVGCDSSNFGEYFDRLKPRYSVR 537 C + EMVVFGLDFGTTFSTVCVYKDGKVYS+KQNNSAYIPTYLYLFSETN+MVFGYEAESLMHN+KV+GSFFRDLKRWVGCDSSNF +YFDRLKP Y+VR Subject 10525 CVICEMVVFGLDFGTTFSTVCVYKDGKVYSFKQNNSAYIPTYLYLFSETNHMVFGYEAESLMHNAKVRGSFFRDLKRWVGCDSSNFSDYFDRLKPHYAVR 10824
Range 2: 10334 to 10531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 52/66(79%) | 0/66(0%) | Plus/Plus |
Query 45 HCVSSCKYLMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRSAHEVSNTTVRGGGFSTVV* 242 H V C +MDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRR+ HE + VRG GFSTVV* Subject 10334 HDVCHCIDIMDQVLQFECLYLLNQAVFAITFVFILLIIRVIKSFRRNVHETPISAVRGQGFSTVV* 10531
Range 3: 10302 to 10358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 11/19(58%) | 0/19(0%) | Plus/Plus |
Query 11 YPQLWCNCMTYTLCVIV*I 67 +P+LW + +TYT+CV V*I Subject 10302 FPRLWDDHVTYTMCVTV*I 10358
Range 4: 10536 to 10823 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 84/96(88%) | 0/96(0%) | Minus/Minus |
Query 249 RTE*RGFKRSKYSPKLLESQPTQRFKSLKNEPFTFELCISDSAS*PKTMLLVSENR*RYVGIYAELFCLYE*TLPSLYTQTVEKVVPKSKPKTTIS 536 RT * GF+RSK S KLLESQPTQRFKSLK EP TF LCISDSAS*PKTM LVSE R*RYVG+YAELFCL E*TLPSLYTQTVEKVVPKSKPKTTIS Subject 10536 RTA*CGFRRSK*SLKLLESQPTQRFKSLKKEPLTFALCISDSAS*PKTM*LVSEKR*RYVGMYAELFCLNE*TLPSLYTQTVEKVVPKSKPKTTIS 10823
Range 5: 10340 to 10534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 40/65(62%) | 0/65(0%) | Minus/Minus |
Query 51 RSHNG*ETSTTDGRVRNLVCASAKRFDHANDQQDKDESYGKNSLVEQVQTLKL*NLVHKIFTR*H 245 +SHN ET TTDGR + V SA+RF+HAND+Q++DE Y KN LVEQ+QTL+L NLVH I+T H Subject 10340 KSHNSRETLTTDGRYWSFVYVSAERFNHANDEQNEDECYCKNRLVEQIQTLELQNLVHNIYTVTH 10534
Range 6: 10304 to 10360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 11/19(58%) | 0/19(0%) | Minus/Minus |
Query 13 DIYTMTHNVYVMQLHHSCG 69 +IYT+TH VYV HS G Subject 10304 NIYTVTHIVYVT*SSHSRG 10360
Range 7: 10525 to 10827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
136.2 bits(291) | 0.0 | 57/101(56%) | 0/101(0%) | Minus/Minus |
Query 238 QTNGVARFQAIEVFSKVT*ITTHPTF*VPKERAFYFRVVHQ*FGFITENHVVGLREQVEVRRNIRGVILLI*VNFTILVHADS*KSRAEV*TENNHFVKIT 540 + N + QAI+V +KV + THP F*VPKERA + R++HQ*FGFIT+NHV+ E+VEV RN+R ++L *VN TI +HAD KSR E+*T+NNHF T Subject 10525 RANRIVWLQAIKVVTKVAGVATHPAF*VPKERASHLRIMHQ*FGFITKNHVISFGEKVEVCRNVRRIVLFE*VNLTIFIHADRRKSRTEI*TKNNHFANHT 10827
Range 8: 10332 to 10535 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 41/68(60%) | 0/68(0%) | Minus/Minus |
Query 43 KITQRLRNLHHGRSCSKPRVRFCEKI*SRE*SAR*RRKLWQKQLG*ASTNTQTVKPGP*DIYTMTHNV 246 +ITQ+ RN HGR + RVRFC KI*SRE* A *RR L QK G*A T+T+T +PGP* +Y+ TH V Subject 10332 QITQQSRNPDHGRPILEFRVRFCGKI*SRE**AE*RRMLLQKPPG*ADTDTRTAEPGP*YLYSDTHRV 10535
Range 9: 10532 to 10822 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 57/97(59%) | 0/97(0%) | Plus/Plus |
Query 245 FTKWLFSV*TSARLFQLSACTRMVKFTHISKITPRIFRRTSTCSLRPTTWFSVMKPNH*CTTRK*KARSLGT*NVGWVVIQVTLENTSIA*NRATPF 535 F KWLF V* S RLF+ SAC +MV+FTH +K R FR TST S + TWF VMKPNH*C R+*+A SLGT*N GWV TL T IA*+ F Subject 10532 FAKWLFLV*ISVRLFRRSACIKMVRFTHSNKTILRTFRHTSTFSPKLITWFLVMKPNH*CIMRR*EALSLGT*NAGWVATPATLVTTLIA*SHTMRF 10822
Range 10: 10330 to 10557 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 39/76(51%) | 0/76(0%) | Plus/Plus |
Query 41 YTLCVIV*ISYGPGFTV*VFVLAQPSCFCHNFRLYLADHSRDQIFSQKRTRGFEHDRPWWRFLNRCVIFTKWLFSV 268 +T CV + YGPG V V V AQP FC+N RL+ A HSRD IF QKRTR RPW FL+ CVI +F + Subject 10330 HTRCVSLYRYYGPGSAVRVSVSAQPGGFCNNIRLHSAHHSRD*IFPQKRTRNSNIGRPWSGFLDCCVICEMVVFGL 10557
Range 11: 10515 to 10712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 40/66(61%) | 0/66(0%) | Plus/Plus |
Query 228 STVV*SLRNGCFRFRLRHDFFNCLRVQGW*SLLI*AK*LRVYSDVPLPVL*DQQHGFRL*SRITDA 425 S ++ LRNGCF FR R+DFF+ LRV W* LLI K V+SD+PLP L + HGF L*SRITDA Subject 10515 SRLLCDLRNGCFWFRFRYDFFDGLRV*RW*GLLIQTKQFCVHSDIPLPFLRN*SHGFWL*SRITDA 10712
Range 12: 10323 to 10406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 16/28(57%) | 0/28(0%) | Plus/Plus |
Query 34 HDVHIVCHRVNILWTRFYSLSVCTCSTK 117 H + +C V ILWTRF S SVC CST+ Subject 10323 HVTYTMCVTV*ILWTRFCSSSVCICSTR 10406
Range 13: 10470 to 10535 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 13/22(59%) | 0/22(0%) | Plus/Plus |
Query 181 EAHTRFRTRPSVVEVSQPLCDL 246 E +T+ + RPSVV VS+ LCDL Subject 10470 ETYTKLQYRPSVVRVSRLLCDL 10535
Range 14: 10330 to 10578 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 46/83(55%) | 0/83(0%) | Minus/Minus |
Query 41 KKSCRSLNRKQPFRKDHTTVEKPPPRTVVFETSCALLRKDLITRMISKIKTKVMAKTAWLSKYKHSNCKTWSIRYLHDDTQCV 289 +KS + K +HTTVEKP PRT SC LRKDLITRM+S++KT V+AKTAWLS+Y+HSNC+TWSI + T C+ Subject 10330 RKSRTEI*TKNNHFANHTTVEKP*PRTADIGVSCTFLRKDLITRMMSRMKTNVIAKTAWLSRYRHSNCRTWSIISIQ*HTSCM 10578
Range 15: 10514 to 10711 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 41/66(62%) | 0/66(0%) | Minus/Minus |
Query 227 ASVIRLHNRKPCCWSQRTGRGTSEYTRSYFAYMSKLYHPCTRRQLKKSCRSLNRKQPFRKDHTTVE 424 ASVIRLHN+KPC +R GRG SE T++ F MSK YH TRR KKS R+LN+KQPFRK H + E Subject 10514 ASVIRLHNQKPCD*FRRKGRGMSECTQNCFV*MSKPYHLYTRRPSKKSYRNLNQKQPFRKSHNSRE 10711