Queries
Nucleotide Sequence (490 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
387.8 | 2104.1 | 33% | 5.064e-106 | 90% | KX958435.1 | |
380.9 | 2067.9 | 33% | 5.936e-104 | 89% | KT948710.1 | |
377.3 | 2083.9 | 33% | 7.533e-103 | 91% | KX274274.1 | |
368.6 | 2046.8 | 33% | 3.146e-100 | 88% | KX274277.1 | |
363.5 | 1897.4 | 33% | 1.035e-98 | 82% | KU324634.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome
Sequence ID: KX958435.1 Length: 8743 Number of Matches: 6
Range 1: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
387.8 bits(840) | 0.0 | 158/163(97%) | 0/163(0%) | Minus/Plus |
Query 2 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH 490 IKTKTCRFGANTCKYLQSFGFD++SDRVDAVV+GSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*DHNSINHWLGHWIGSTLLEKVE AIFR*QYSPVSTRRALQGRH Subject 6917 IKTKTCRFGANTCKYLQSFGFDIYSDRVDAVVVGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DHNSINHWLGHWIGSTLLEKVEFAIFR*QYSPVSTRRALQGRH 7405
Range 2: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
373.1 bits(808) | 0.0 | 151/163(93%) | 0/163(0%) | Plus/Minus |
Query 2 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY 490 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNG+MVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*R+NVK *TPHL GQLEVGIVRNC*IYGLLSKAN+NSLNIQFKRRP+N+ +HSIT+NIEAKRLEVLAGVSTKPAS LY Subject 6917 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGVMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RHNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANKNSLNIQFKRRPHNHCVHSITINIEAKRLEVLAGVSTKPASFSLY 7405
Range 3: 6919 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
350.2 bits(758) | 0.0 | 157/162(97%) | 0/162(0%) | Plus/Minus |
Query 3 CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF 488 CRPCNALRVETGEYCHLNMA+STFSRSVEPIQCPSQWLMELWS*PSWQVAGKAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQ+RTPSTSSSKGDP TTASTLSL* SKPKDWRYLQVLAPNLQVLVF Subject 6919 CRPCNALRVETGEYCHLNMANSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASHCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQIRTPSTSSSKGDPTTTASTLSL*ISKPKDWRYLQVLAPNLQVLVF 7404
Range 4: 6918 to 7406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.9 bits(742) | 0.0 | 148/163(91%) | 0/163(0%) | Plus/Minus |
Query 1 CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL 489 CAVPVMPSVWKLVNIVT*IWQ+RLSQEV*NQSNAQANG*W+YGLSPVGRLLERHL ALLSVCFDALLLRRRTNAYLLKLGP*TSIT QR* LNPAP RAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKAT PLYHY++RSQKIGGTCRC*HQTCK SL Subject 6918 CAVPVMPSVWKLVNIVT*IWQIRLSQEV*NQSNAQANG*WSYGLSPVGRLLERHLTALLSVCFDALLLRRRTNAYLLKLGP*TSITSQR*MLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATPQPLRPLYHYKYRSQKIGGTCRC*HQTCKF*SL 7406
Range 5: 6919 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
334.6 bits(724) | 0.0 | 146/162(90%) | 0/162(0%) | Minus/Plus |
Query 3 KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA 488 KD +LQVWC*HLQVPPIFWLR ***SG VAF*TGC*GSS+LLWKGGRRSSSCAQFRLQVAL GAGFN+*RC+VIEV*GPNFRR*ALVLRRSNKASKQTDNNA RCLSSNLPTGLRP* H*PLAWALDWFYTS*ESR CHIQVTIFTSFHTEGITGTA Subject 6919 KD*NLQVWC*HLQVPPIFWLRYL***SGRSGCGVAF*TGC*GSSYLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCDVIEV*GPNFRR*ALVLRRSNKASKQTDNNAVRCLSSNLPTGLRP*LH*PLAWALDWFYTS*ESRICHIQVTIFTSFHTEGITGTA 7404
Range 6: 6918 to 7406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
315.4 bits(682) | 0.0 | 152/163(93%) | 0/163(0%) | Minus/Plus |
Query 1 *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 489 *R +LAGLVLTPASTSNLLAS+FIVIEW + L GRLLNWMLREF FALERRP*I*QLRTIPTSSCP RCGVQ LTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT Subject 6918 *RLKLAGLVLTPASTSNLLASIFIVIEWTQWLWGRLLNWMLREFLFALERRP*I*QLRTIPTSSCPARCGVQHLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 7406
Grapevine rupestris stem pitting associated virus isolate VF1, partial genome
Sequence ID: KT948710.1 Length: 8716 Number of Matches: 6
Range 1: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
380.9 bits(825) | 0.0 | 157/163(96%) | 0/163(0%) | Minus/Plus |
Query 2 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH 490 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*DHNSINHW GHWIGSTLLEKV+ AIFR*Q+SPVSTR ALQGRH Subject 6917 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DHNSINHWPGHWIGSTLLEKVKFAIFR*QHSPVSTRGALQGRH 7405
Range 2: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
362.6 bits(785) | 0.0 | 148/163(91%) | 0/163(0%) | Plus/Minus |
Query 2 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY 490 VPSL*CPPCGNW*+LSPEYGKFDFLKKCRTNPMP+PMVNG+MVLAQLAGCWKGISLHYY FASMPCCC+VEPML+F*SWVPRLQ*R NVK *TPHL GQLEV IVRNC*IY LLSKANENSLNIQFK RPYNN +HSITMNIEAKRLEVLAGVSTKPAS GLY Subject 6917 VPSL*CPPCGNW*MLSPEYGKFDFLKKCRTNPMPRPMVNGVMVLAQLAGCWKGISLHYY*FASMPCCCNVEPMLVF*SWVPRLQ*RNNVKC*TPHLAGQLEVRIVRNC*IYSLLSKANENSLNIQFKWRPYNNCVHSITMNIEAKRLEVLAGVSTKPASFGLY 7405
Range 3: 6919 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 155/162(96%) | 0/162(0%) | Plus/Minus |
Query 3 CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF 488 CRPCNA RVETGE CHLNMA+ TFSRSVEPIQCP QWLMELWS*PSWQVAGKAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF Subject 6919 CRPCNAPRVETGECCHLNMANLTFSRSVEPIQCPGQWLMELWS*PSWQVAGKASHCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF 7404
Range 4: 6918 to 7406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.7 bits(735) | 0.0 | 145/163(89%) | 0/163(0%) | Plus/Minus |
Query 1 CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL 489 CAVPVMP VWKLVN+VT*IWQ+ LSQEV*NQSNAQANG*W+YGLSPVGRLLERHL ALL VCFDALLL+RRTNA LLKLGP*TSIT QR* LNPAP RAT*S+NCAQLLDL+PPFQSK*ELPQHPVQ ATL*Q PLYHYEHRSQKIGGTCRC*HQTCK WSL Subject 6918 CAVPVMPPVWKLVNVVT*IWQI*LSQEV*NQSNAQANG*WSYGLSPVGRLLERHLTALLLVCFDALLLQRRTNACLLKLGP*TSIT*QR*MLNPAPRRAT*SQNCAQLLDLQPPFQSK*ELPQHPVQMATL*QLRPLYHYEHRSQKIGGTCRC*HQTCKFWSL 7406
Range 5: 6919 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
334.6 bits(724) | 0.0 | 144/162(89%) | 0/162(0%) | Minus/Plus |
Query 3 KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA 488 KDQ+LQVWC*HLQVPPIFWLRCS***SG CYRVA *TGC*GSSHLLWKGG RSSSCAQF LQVAL GAGFN+*RC VIEV*GPNFRR ALVLR SNKASKQT+NNA RCLSSNLPTGLRP* H*PLAWALDWFYTS*ES+ CHIQVT FTSFHT GITGTA Subject 6919 KDQNLQVWC*HLQVPPIFWLRCS***SGRSCYRVAI*TGC*GSSHLLWKGGCRSSSCAQF*LQVALRGAGFNI*RCYVIEV*GPNFRRQALVLRCSNKASKQTNNNAVRCLSSNLPTGLRP*LH*PLAWALDWFYTS*ESQICHIQVTTFTSFHTGGITGTA 7404
Range 6: 6918 to 7406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
309.9 bits(670) | 0.0 | 151/163(93%) | 0/163(0%) | Minus/Plus |
Query 1 *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 489 *RP+LAGLVLTPASTSNLLASMFIVIEW +LL*GR LNWMLREFSFALERR *I*QLRTI TSSCP RCGVQ LTL RY*SLGTQLQK SIGST QQQGIEAN***CSEMPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT Subject 6918 *RPKLAGLVLTPASTSNLLASMFIVIEWTQLL*GRHLNWMLREFSFALERRL*I*QLRTILTSSCPARCGVQHLTLLRY*SLGTQLQKTSIGSTLQQQGIEAN***CSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 7406
Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome
Sequence ID: KX274274.1 Length: 8725 Number of Matches: 6
Range 1: 6916 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
377.3 bits(817) | 0.0 | 154/163(94%) | 0/163(0%) | Minus/Plus |
Query 2 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH 490 IKTKTCRFGANTC+YLQSFGF+++SDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*D+NSINHWLGHWIGSTLLEKV+ AIFR*QYSPVSTR ALQGRH Subject 6916 IKTKTCRFGANTCRYLQSFGFEIYSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DYNSINHWLGHWIGSTLLEKVKFAIFR*QYSPVSTRGALQGRH 7404
Range 2: 6916 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
366.7 bits(794) | 0.0 | 149/163(91%) | 0/163(0%) | Plus/Minus |
Query 2 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY 490 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNG++VLAQLAGCWKGI LHYYQFASMPCCC+VEPMLIF*SWVPRLQ*R+NVK *TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFK RPYNN +HSIT++ EAKRLEV AGVSTKPAS GLY Subject 6916 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGVIVLAQLAGCWKGILLHYYQFASMPCCCNVEPMLIF*SWVPRLQ*RHNVKC*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKWRPYNNCVHSITIDFEAKRLEVPAGVSTKPASFGLY 7404
Range 3: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 148/163(91%) | 0/163(0%) | Plus/Minus |
Query 1 CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL 489 CAVPVMP VWKLVNIVT*IWQ+ LSQEV*NQSNAQANG*W+Y LSPVGRLLERHL ALLSVCFDALLL+RRTNAYLLKLGP*TSIT QR* LNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQ ATL*Q PLYHY RSQKIGGTCRC*HQTCK WSL Subject 6917 CAVPVMPPVWKLVNIVT*IWQI*LSQEV*NQSNAQANG*WSYSLSPVGRLLERHLTALLSVCFDALLLQRRTNAYLLKLGP*TSITSQR*MLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQMATL*QLRPLYHYRFRSQKIGGTCRC*HQTCKFWSL 7405
Range 4: 6918 to 7403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
340.1 bits(736) | 0.0 | 147/162(91%) | 0/162(0%) | Minus/Plus |
Query 3 KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA 488 KDQ+LQVWC*HLQVPPIFWLR ***SG CYRVA *TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFN+*RC+VIEV*GPNFRR*ALVLR SNKASKQTDNNA RCLSSNLPTGLR * H*PLAWALDWFYTS*ES+ CHIQVTIFTSFHT GITGTA Subject 6918 KDQNLQVWC*HLQVPPIFWLRNL***SGRSCYRVAI*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNI*RCDVIEV*GPNFRR*ALVLRCSNKASKQTDNNAVRCLSSNLPTGLRL*LH*PLAWALDWFYTS*ESQICHIQVTIFTSFHTGGITGTA 7403
Range 5: 6918 to 7403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
338.3 bits(732) | 0.0 | 155/162(96%) | 0/162(0%) | Plus/Minus |
Query 3 CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF 488 CRPCNA RVETGEYCHLNMA+ TFSRSVEPIQCPSQWLMEL S*PSWQVAGKAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL* SKPKDWRYLQVLAPNLQVLVF Subject 6918 CRPCNAPRVETGEYCHLNMANLTFSRSVEPIQCPSQWLMEL*S*PSWQVAGKASYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*ISKPKDWRYLQVLAPNLQVLVF 7403
Range 6: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
315.4 bits(682) | 0.0 | 152/163(93%) | 0/163(0%) | Minus/Plus |
Query 1 *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 489 *RP+LAGLVLTPA TSNLLAS IVIEW +LL*GR LNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQ LTL*RY*SLGTQLQKISIGST QQQGIEAN***CS+MPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT Subject 6917 *RPKLAGLVLTPAGTSNLLASKSIVIEWTQLL*GRHLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQHLTL*RY*SLGTQLQKISIGSTLQQQGIEAN***CSKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 7405
Grapevine rupestris stem pitting associated virus isolate SK30, complete genome
Sequence ID: KX274277.1 Length: 8724 Number of Matches: 6
Range 1: 6916 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
368.6 bits(798) | 0.0 | 150/163(92%) | 0/163(0%) | Plus/Minus |
Query 2 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY 490 VPSL*CPPCGNW*ILSPEYGK DFLKKCRTNPMPKP+VNG+MVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF SWVPRLQ* YNVK *TPHL GQLEVGIVRNC*IYGLLSKANENSLNIQFK RPYNN +HSIT+NI+AKRLEVLAGVSTKPAS GLY Subject 6916 VPSL*CPPCGNW*ILSPEYGKLDFLKKCRTNPMPKPIVNGVMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQFKWRPYNNCVHSITINIKAKRLEVLAGVSTKPASFGLY 7404
Range 2: 6916 to 7404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
360.3 bits(780) | 0.0 | 153/163(94%) | 0/163(0%) | Minus/Plus |
Query 2 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH 490 IKTKTCRFGANTCKYLQSFGFDV+SDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTF+VVTLLKSRDPT EDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*DHNSIN+ LGH IGSTLLEKV AIFR*QYSPVSTRRAL GRH Subject 6916 IKTKTCRFGANTCKYLQSFGFDVYSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DHNSINYRLGHRIGSTLLEKV*FAIFR*QYSPVSTRRAL*GRH 7404
Range 3: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
343.3 bits(743) | 0.0 | 143/163(88%) | 0/163(0%) | Plus/Minus |
Query 1 CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL 489 CAVP+MPSVWKLVNIVT*IWQ+RLSQEV*NQS+AQA+ *W+YGLSP+GRLLERHL ALLS+CFDALLLRRRTNAYLL+LGP*TSI LQR LNPAP RAT*SRNCAQLLDLRPPFQSK*ELPQHPVQ ATL*Q PLYHY+H+SQKIGGTCRC*HQTCK WSL Subject 6917 CAVPIMPSVWKLVNIVT*IWQIRLSQEV*NQSDAQADS*WSYGLSPIGRLLERHLTALLSICFDALLLRRRTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQMATL*QLRPLYHYKHQSQKIGGTCRC*HQTCKFWSL 7405
Range 4: 6918 to 7403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.1 bits(712) | 0.0 | 142/162(88%) | 0/162(0%) | Minus/Plus |
Query 3 KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA 488 KDQ+LQVWC*HLQVPPIFWL C ***SG CYRVA *TGC*GSSHLLWKGGRRSSSCAQFRLQVAL GAGFN+*RCN+IEV*GPN RR*ALVLRRSNKASKQ DNNA RCLSSNLP GLRP* H* AWA DWFYTS*ES CHIQVTIFTSFHTEGI GTA Subject 6918 KDQNLQVWC*HLQVPPIFWL*CL***SGRSCYRVAI*TGC*GSSHLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVLRRSNKASKQIDNNAVRCLSSNLPIGLRP*LH*LSAWASDWFYTS*ESLICHIQVTIFTSFHTEGIIGTA 7403
Range 5: 6918 to 7403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.1 bits(701) | 0.0 | 150/162(93%) | 0/162(0%) | Plus/Minus |
Query 3 CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF 488 CRP NALRVETGEYCHLNMA+ TFSRSVEPI+CPS+ LMELWS*P+WQVAGKAS CIII+LLRCLVAAT*NQCLSS VGSLDFNNVTT NVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF Subject 6918 CRPYNALRVETGEYCHLNMAN*TFSRSVEPIRCPSR*LMELWS*PNWQVAGKASHCIIINLLRCLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF 7403
Range 6: 6917 to 7405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
321.4 bits(695) | 0.0 | 154/163(94%) | 0/163(0%) | Minus/Plus |
Query 1 *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 489 *RP+LAGLVLTPASTSNLLA MFIVIEW +LL*GR LNWMLREFSFALERRP*I*QLRTIPTSSCP RCGVQ LTL* Y*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT Subject 6917 *RPKLAGLVLTPASTSNLLALMFIVIEWTQLL*GRHLNWMLREFSFALERRP*I*QLRTIPTSSCPARCGVQHLTL*HY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 7405
Grapevine rupestris stem pitting associated virus isolate ML replicase polyprotein gene, partial cds; triple gene block protein 1 (TGB1), triple gene block protein 2 (TGB2), and triple gene block protein 3 (TGB3) genes, complete cds; and capsid protein gene, partial cds
Sequence ID: KU324634.1 Length: 2653 Number of Matches: 6
Range 1: 1213 to 1701 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
363.5 bits(787) | 0.0 | 149/163(91%) | 0/163(0%) | Minus/Plus |
Query 2 IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH 490 IKTKTCRFGANTCKYLQSFGFDV+SDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAF ATC+LG*D+NS NHW GHW+ T LEKV+ AIFR*QYSPV TRRALQGRH Subject 1213 IKTKTCRFGANTCKYLQSFGFDVYSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFSATCRLG*DNNSTNHWFGHWVSPTFLEKVKSAIFR*QYSPVPTRRALQGRH 1701
Range 2: 1213 to 1701 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
334.2 bits(723) | 0.0 | 138/163(85%) | 0/163(0%) | Plus/Minus |
Query 2 VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY 490 VPSL*CPPCGNW*ILSPEYG+FDFLKKCRTNPMPKPMV+G++VLAQ AGC KGI LHYYQFASMPCCC+VEPMLIF SWVP LQ*R++VK *TPH QLEVGIV NC IYGLLSKANENSLNI+FK RPYN+ ++SIT+NIEAKRLEVLAGVSTKPASLGLY Subject 1213 VPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVSGVIVLAQSAGC*KGILLHYYQFASMPCCCNVEPMLIFRSWVPGLQ*RHDVKC*TPHFARQLEVGIVCNCKIYGLLSKANENSLNIKFKWRPYNDCVYSITINIEAKRLEVLAGVSTKPASLGLY 1701
Range 3: 1215 to 1700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.0 bits(679) | 0.0 | 148/162(91%) | 0/162(0%) | Plus/Minus |
Query 3 CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF 488 CRPCNALRV TGEYCHLNMA TFSR+V QCP+QWL+EL S*PS QVA KAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF Subject 1215 CRPCNALRVGTGEYCHLNMADLTFSRNVGLTQCPNQWLVELLS*PSRQVAEKASYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF 1700
Range 4: 1214 to 1702 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
307.6 bits(665) | 0.0 | 133/163(82%) | 0/163(0%) | Plus/Minus |
Query 1 CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL 489 CAVPVMPSVW+LVNIVT*IWQ+ LSQE+*+ NAQ NG*W+Y LSPVGRLL+RHL ALLSVCFDALLL+RRTNAYL KLGP TSIT +R* LNPA +AT*SRNC QL DLRPPFQSK*ELPQH VQ ATL*+ LYHY+HRSQKIGGTCRC*HQTCKSWSL Subject 1214 CAVPVMPSVWELVNIVT*IWQI*LSQEM*D*PNAQTNG*WSYCLSPVGRLLKRHLTALLSVCFDALLLQRRTNAYLQKLGPWTSITSRR*MLNPALRKAT*SRNCVQLQDLRPPFQSK*ELPQHQVQMATL*RLRLLYHYKHRSQKIGGTCRC*HQTCKSWSL 1702
Range 5: 1215 to 1700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.5 bits(632) | 0.0 | 133/162(82%) | 0/162(0%) | Minus/Plus |
Query 3 KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA 488 KDQDLQVWC*HLQVPPIFWLRC ***S YRVA *T C*GSSHLLWKGGRRS SC QFRLQVAL AGFN+*R +VIEV GPNF R*ALVLR SNKASKQTDNNA RCL SNLPTGLR * H*PL WAL Y S*ES+ CHIQVTIFTS HTEGITGTA Subject 1215 KDQDLQVWC*HLQVPPIFWLRCL***SRRSRYRVAI*T*C*GSSHLLWKGGRRSCSCTQFRLQVALRSAGFNI*RRDVIEVQGPNF*R*ALVLRCSNKASKQTDNNAVRCLFSNLPTGLRQ*LH*PLVWALG*SYIS*ESQICHIQVTIFTSSHTEGITGTA 1700
Range 6: 1214 to 1702 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.6 bits(617) | 0.0 | 144/163(88%) | 0/163(0%) | Minus/Plus |
Query 1 *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 489 *RPRLAGLVLTPASTSNLLASMFIVIE + L*GR LN MLREFSFALERRP*I QL TIPTSSC +CGVQ LT *RY*S GTQL KISIGST QQQGIEAN***CS+MPFQQPA+WAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT Subject 1214 *RPRLAGLVLTPASTSNLLASMFIVIE*TQSL*GRHLNLMLREFSFALERRP*ILQLHTIPTSSCLAKCGVQHLTS*RY*SPGTQLLKISIGSTLQQQGIEAN***CSKMPFQQPADWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT 1702
Nucleotide Sequence (114 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
90.9 | 408.6 | 34% | 9.46e-18 | 95% | AB277783.1 | |
90.9 | 430.6 | 34% | 9.46e-18 | 100% | KX274275.1 | |
83.1 | 386.1 | 34% | 2.097e-15 | 92% | AY368590.1 | |
74.8 | 192.0 | 32% | 6.374e-13 | 64% | AF026278.1 | |
73.9 | 181.9 | 32% | 1.203e-12 | 58% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 5
Range 1: 782 to 892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 37/37(100%) | 0/37(0%) | Plus/Minus |
Query 2 EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 112 EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ Subject 782 EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 892
Range 2: 782 to 892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 35/37(95%) | 0/37(0%) | Minus/Plus |
Query 2 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL 112 LFEAID*ALS+WHGVIIMNNLVKALSTFEFVG+YSVL Subject 782 LFEAID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVL 892
Range 3: 780 to 893 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 36/38(95%) | 0/38(0%) | Plus/Minus |
Query 1 *ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT 114 *ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTT Subject 780 *ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTT 893
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5
Range 1: 6526 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 37/37(100%) | 0/37(0%) | Plus/Minus |
Query 2 EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 112 EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ Subject 6526 EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 6636
Range 2: 6525 to 6635 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 37/37(100%) | 0/37(0%) | Minus/Plus |
Query 3 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA 113 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA Subject 6525 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA 6635
Range 3: 6526 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 37/37(100%) | 0/37(0%) | Minus/Plus |
Query 2 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL 112 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL Subject 6526 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL 6636
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 5
Range 1: 6526 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 35/37(95%) | 0/37(0%) | Plus/Minus |
Query 2 EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 112 EHAINTHKLKRRQSFN*VIHNN MPNT*GLIYSFKQ Subject 6526 EHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQ 6636
Range 2: 6526 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 35/37(95%) | 0/37(0%) | Minus/Plus |
Query 2 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL 112 LFEAID*ALSVWH IIMNNLVKALSTFEFVGVYSVL Subject 6526 LFEAID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVL 6636
Range 3: 6525 to 6635 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 34/37(92%) | 0/37(0%) | Minus/Plus |
Query 3 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA 113 +V*SYRLGLKCLA DYYE*LS*SFVYV*VCGCL*RA Subject 6525 IV*SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RA 6635
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 3
Range 1: 6526 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 32/37(86%) | 0/37(0%) | Minus/Plus |
Query 2 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL 112 LFEAID*ALS+WH + IMNNLVKALSTFEFVGV+SVL Subject 6526 LFEAID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVL 6636
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3
Range 1: 6526 to 6636 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 30/37(81%) | 0/37(0%) | Minus/Plus |
Query 2 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL 112 LFEA+D*ALS+WH + IMNNLVKALSTFEF+GV+SVL Subject 6526 LFEAVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVL 6636
Nucleotide Sequence (373 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
278.7 | 1072.7 | 21% | 2.215e-73 | 62% | AB277783.1 | |
278.3 | 1118.0 | 21% | 3.043e-73 | 66% | KX274275.1 | |
273.2 | 1358.3 | 16% | 1.001e-71 | 80% | AB277787.1 | |
271.4 | 1251.0 | 16% | 3.567e-71 | 73% | AB277788.1 | |
273.2 | 1380.3 | 16% | 1.001e-71 | 81% | AY881627.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 9
Range 1: 797 to 1165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.7 bits(602) | 0.0 | 113/123(92%) | 0/123(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 371 D*ALS+WHGVIIMNNLVKALSTFEFVG+YSVL+FPVVVHSVPGSGKSSLIREL++EDESF+AFTAGVPD+PNL+GRYIKPYSPGCAV+GKINILDEYLSVSDISGFDVLFSDPYQNIS+PREA Subject 797 D*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREA 1165
Range 2: 797 to 1162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.2 bits(400) | 0.0 | 80/122(66%) | 0/122(0%) | Plus/Minus |
Query 6 LPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 371 LPWN D+L+ V +*HVKTRN+ RQILIKY+YLPL+ T RV L+VP + +V + K Y+ LVL D+ Y FTTT +A++NNWK EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI Subject 797 LPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPLYSTTRRVWLNVPPREVGSVGNAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 1162
Range 3: 940 to 1164 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 55/75(73%) | 0/75(0%) | Plus/Minus |
Query 4 ASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 228 ASLG L+F GSEN+TSKPE+S TD+YSSS+FIFP TA PGE GLMYLP R G+SGTPAVKA K SSS SSLI+ Subject 940 ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK 1164
Range 4: 796 to 891 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 30/32(94%) | 0/32(0%) | Plus/Minus |
Query 277 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S 372 STL* PTNSNVDKALTKLFIIITPCQ LKA*S Subject 796 STL*IPTNSNVDKALTKLFIIITPCQILKA*S 891
Range 5: 796 to 1167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 78/124(63%) | 0/124(0%) | Minus/Plus |
Query 1 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT 372 RLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQISSCC R *W*K +K *GR F S Y +R S+ +VH A+LS +C EDK+T**V VC *+FWF*R I P+ ++Q SKGG+ Subject 796 RLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSRHSQPLWEVH*AILSWLCCKGEDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGS 1167
Range 6: 795 to 1163 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 76/123(62%) | 0/123(0%) | Plus/Minus |
Query 5 PPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 373 PPLE * G +I RQNQK QT+THQV LSS H ES A*CT +C *+L +RPQ L FYHY R QQLEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL Subject 795 PPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSPLQHNQESMA*CTSQRGWECRERRP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL 1163
Range 7: 1023 to 1163 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 29/47(62%) | 0/47(0%) | Minus/Plus |
Query 5 GTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGR 145 GT S TL V +GR* YLMSICL + FLVLTCY T + S FQGR Subject 1023 GTLSHTLLVVL*RGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGR 1163
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9
Range 1: 6541 to 6909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.3 bits(601) | 0.0 | 114/123(93%) | 0/123(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 371 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL+FPVVVHSVPGSGKSSLIREL++EDE+F+AFTAGVPD+PNL+GRYIKPYSPGCAV+GKINILDEYLSVSDISGFDVLFSDPYQNIS+PREA Subject 6541 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREA 6909
Range 2: 6541 to 6906 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 82/122(67%) | 0/122(0%) | Plus/Minus |
Query 6 LPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 371 LPWN D+L+ V +*HVKTRN+ RQILIKY+YLP + T RV LDVP + V + K Y+ LVL D+ Y TFTTT +AM+NNWK EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI Subject 6541 LPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPFYSTTRRVWLDVPPREVGCVRNAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 6906
Range 3: 6540 to 6911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.9 bits(371) | 0.0 | 82/124(66%) | 0/124(0%) | Minus/Plus |
Query 1 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT 372 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCC *R *W*K* +K *GR F S Y + ++ +VHQA+LS +C REDK+T**V VC *+FWF*R I P+ ++Q SKGG+ Subject 6540 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCS*RSW*W*K*FNKRTCH*GREFHSLYGRRS*HTQPLWEVHQAILSWLCCKREDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGS 6911
Range 4: 6684 to 6908 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.7 bits(257) | 0.0 | 55/75(73%) | 0/75(0%) | Plus/Minus |
Query 4 ASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 228 ASLG L+F GSEN+TSKPE+S TD+YSSS+FIFP TA PGE GLMYLP R G+SGTPAVKA K SSS SSLI+ Subject 6684 ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKFSSSVTSSLIK 6908
Range 5: 6540 to 6635 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 32/32(100%) | 0/32(0%) | Plus/Minus |
Query 277 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S 372 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S Subject 6540 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S 6635
Range 6: 6539 to 6907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 81/123(66%) | 0/123(0%) | Plus/Minus |
Query 5 PPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 373 PPLE * G +I RQNQK QT+THQV LSSL H ES A*CT C *+L +RPQ L YFYHY RY QQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL Subject 6539 PPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSLLQHNQESMA*CTSQRGWVCQERRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 6907
Range 7: 6767 to 6907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 31/47(66%) | 0/47(0%) | Minus/Plus |
Query 5 GTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGR 145 GTSS TL V KGR* YLMSICL + FLVLTCY T + S FQGR Subject 6767 GTSSHTLLVVL*KGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGR 6907
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 7
Range 1: 800 to 1165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.2 bits(590) | 0.0 | 117/122(96%) | 0/122(0%) | Minus/Plus |
Query 3 *ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 368 *ALSVW GV IMNNLVKALS FEFVGV+ VLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA Subject 800 *ALSVWRGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 1165
Range 2: 800 to 1165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.5 bits(549) | 0.0 | 98/122(80%) | 0/122(0%) | Plus/Minus |
Query 3 CLPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GL 368 CLPWNADVLVGV*E H+KTRNIRDRQ+LIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKS+KR VLR++LPY ATFTTTW+ M+NNWKF++ + +K K RQS +*VIHN HT PNT*GL Subject 800 CLPWNADVLVGV*EQHIKTRNIRDRQVLIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSHKRFVLRNKLPY*ATFTTTWNTMNNNWKFKYTEHANKFKCRQSLD*VIHNTHTTPNT*GL 1165
Range 3: 799 to 1167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.5 bits(501) | 0.0 | 99/123(80%) | 0/123(0%) | Minus/Plus |
Query 1 LGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT 369 LGLKCLAWC+YYE*LS FV +*+C + ISSCC * R*W*K*P+KGA+ *GR+FC FYSGCARQSKSNRKVHQALLSRVCSAREDKYT**V VCL*YFWF* A+LRPLPEHQHSKGGT Subject 799 LGLKCLAWCEYYE*LSQGFVCI*ICWRVLCT*ISSCCS*CSR*W*K*PNKGAYF*GRIFCGFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VLVCL*YFWF*CAVLRPLPEHQHSKGGT 1167
Range 4: 795 to 1166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.7 bits(495) | 0.0 | 102/124(82%) | 0/124(0%) | Plus/Minus |
Query 2 VPPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 373 VPPLEC*CSGRGLR A QNQKYQRQT+THQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*K QK RPQ+*APL GYFYHYL Y QQLEI* Q Q TK *LSYS* SHHAKHLRP L Subject 795 VPPLEC*CSGRGLRTAHQNQKYQRQTSTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KPQKIRPQK*APLLGYFYHYLEHYEQQLEI*VHRTRQQIQMQTKP*LSYS*YSHHAKHLRPKL 1166
Range 5: 940 to 1167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
177.9 bits(382) | 0.0 | 75/76(99%) | 0/76(0%) | Plus/Minus |
Query 1 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 228 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSE+SSLIR Subject 940 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEISSLIR 1167
Range 6: 796 to 891 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 26/32(81%) | 0/32(0%) | Plus/Minus |
Query 277 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S 372 ST TPTNSN DKALTKLFII+TP QTLKA*+ Subject 796 STQNTPTNSNADKALTKLFIILTPRQTLKA*T 891
Range 7: 987 to 1166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 57/60(95%) | 0/60(0%) | Minus/Plus |
Query 2 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGRH 181 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMS CLSLIFLVL C SQTPTRTSAFQGRH Subject 987 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSTCLSLIFLVLMCCSQTPTRTSAFQGRH 1166
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1
Sequence ID: AB277788.1 Length: 2876 Number of Matches: 7
Range 1: 800 to 1165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.4 bits(586) | 0.0 | 114/122(93%) | 0/122(0%) | Minus/Plus |
Query 3 *ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 368 *ALSVWHGV IMNNLVKALS FEFVGV+ VLKFPVVVHSVPGSGKSSLIRELISEDE+FVAFTAGVPDSPNLTGRYIKPY+PGCAVQGKINILDEYLSVSD SGFDVLFSDPYQN+SIPREA Subject 800 *ALSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREA 1165
Range 2: 800 to 1165 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.1 bits(509) | 0.0 | 89/122(73%) | 0/122(0%) | Plus/Minus |
Query 3 CLPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GL 368 CL WNAD+LV V*E H+K R+IRDRQ+LIKY+Y PLHCTPW VGLDVPSC*IWTVWHT C+ +K LV R+ELPY ATFTTTW+ ++NNWKF++ + +K KRRQSF+*VIHN HTMPNT*GL Subject 800 CLSWNADILVRV*EQHIKARSIRDRQVLIKYVYFPLHCTPWSVGLDVPSC*IWTVWHTCCEGHKSLVFRNELPY*ATFTTTWNTVNNNWKFKYTKHANKFKRRQSFD*VIHNTHTMPNT*GL 1165
Range 3: 940 to 1167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.8 bits(362) | 0.0 | 71/76(93%) | 0/76(0%) | Plus/Minus |
Query 1 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 228 CASLGML FW*GSENSTSKPE+SETDKYSSS+FIFPCTAHPG *GLMYLPVRFGLSGTPAVKATK SSSEMSSLIR Subject 940 CASLGMLTFW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKATKASSSEMSSLIR 1167
Range 4: 796 to 891 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 27/32(84%) | 0/32(0%) | Plus/Minus |
Query 277 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S 372 ST TPTNSN DKALTKLFII+TPCQTLKA*+ Subject 796 STQNTPTNSNADKALTKLFIILTPCQTLKA*T 891
Range 5: 796 to 1167 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 92/124(74%) | 0/124(0%) | Minus/Plus |
Query 1 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT 372 RLGLKCLAWC+YYE*LS SFV V*+C + ISSCC R*W*K*P+KGAH * R FC +S CARQSKSNRKVHQAL SRVCSARE+K+T**V VCL*YFW * A+LRPLPE QHSK GT Subject 796 RLGLKCLAWCEYYE*LSQSFVCV*ICWRVLCT*ISSCCSQCSR*W*K*PNKGAHF*RRGFCGLHSRCARQSKSNRKVHQALRSRVCSARENKHT**VLVCL*YFWL*CAVLRPLPECQHSKRGT 1167
Range 6: 801 to 1166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 92/122(75%) | 0/122(0%) | Plus/Minus |
Query 2 VPPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRP 367 VP LEC* SG+GLR A Q+QKYQRQT+THQV L SLALHTLE RA*CTFLLDLDCLAH L*+ QK R Q+*APL GYFYHYL QQLEI* Q QT TKL*LSYS* SHHAKHLRP Subject 801 VPLLEC*HSGKGLRTAHQSQKYQRQTSTHQVCLFSLALHTLERRA*CTFLLDLDCLAHLL*RPQKPRLQK*APLLGYFYHYLEHCEQQLEI*VHKTRQQIQTQTKL*LSYS*YSHHAKHLRP 1166
Range 7: 987 to 1166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 49/60(82%) | 0/60(0%) | Minus/Plus |
Query 2 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGRH 181 Q+VCQTVQI*QEGTSSPTLQGVQCKG+* YLMS CLSLI L L C SQT TR SAFQ RH Subject 987 QQVCQTVQI*QEGTSSPTLQGVQCKGK*TYLMSTCLSLILLALMCCSQTLTRMSAFQERH 1166
Rupestris stem pitting associated virus strain BS, complete genome
Sequence ID: AY881627.1 Length: 8743 Number of Matches: 7
Range 1: 6544 to 6909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.2 bits(590) | 0.0 | 117/122(96%) | 0/122(0%) | Minus/Plus |
Query 3 *ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 368 *ALSVW GV IMNNLVKALS FEFVGV+ VLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA Subject 6544 *ALSVWRGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA 6909
Range 2: 6544 to 6909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 102/122(84%) | 0/122(0%) | Plus/Minus |
Query 3 CLPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GL 368 CLPWNADVLVGV*E H+KTRNIRDRQ+LIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKS+KR VLRDELPY ATFTTTW+ M+NNWKF+H +T+K K RQS +*VIHN HT PNT*GL Subject 6544 CLPWNADVLVGV*EQHIKTRNIRDRQVLIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSHKRFVLRDELPY*ATFTTTWNTMNNNWKFKHTEHTNKFKCRQSLD*VIHNTHTTPNT*GL 6909
Range 3: 6543 to 6911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
242.5 bits(523) | 0.0 | 102/123(83%) | 0/123(0%) | Minus/Plus |
Query 1 LGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT 369 LGLKCLAWC+YYE*LS FV +*+C C+ A ISSCC * R*W*K*P+KGAHL*GR+FC FYSGCARQSKSNRKVHQALLSRVCSAREDKYT**V VCL*YFWF* A+LRPLP+HQHSKGGT Subject 6543 LGLKCLAWCEYYE*LSQGFVCI*ICWCVLCA*ISSCCS*CSR*W*K*PNKGAHL*GRIFCGFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VLVCL*YFWF*CAVLRPLPKHQHSKGGT 6911
Range 4: 6545 to 6910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.0 bits(500) | 0.0 | 103/122(84%) | 0/122(0%) | Plus/Minus |
Query 2 VPPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRP 367 VPPLEC*C GRGLR A QNQKYQRQT+THQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*K QK RPQR*APL GYFYHYL Y QQLEI*A H Q Q TK *LSYS* SHHAKHLRP Subject 6545 VPPLEC*CFGRGLRTAHQNQKYQRQTSTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KPQKIRPQR*APLLGYFYHYLEHYEQQLEI*AHRTHQQIQMQTKP*LSYS*YSHHAKHLRP 6910
Range 5: 6684 to 6911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.8 bits(386) | 0.0 | 76/76(100%) | 0/76(0%) | Plus/Minus |
Query 1 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 228 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR Subject 6684 CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR 6911
Range 6: 6540 to 6635 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 26/32(81%) | 0/32(0%) | Plus/Minus |
Query 277 STL*TPTNSNVDKALTKLFIIITPCQTLKA*S 372 ST TPTNSN DKALTKLFII+TP QTLKA*+ Subject 6540 STQNTPTNSNADKALTKLFIILTPRQTLKA*T 6635
Range 7: 6731 to 6910 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 56/60(93%) | 0/60(0%) | Minus/Plus |
Query 2 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGRH 181 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMS CLSLIFLVL C SQTPT+TSAFQGRH Subject 6731 QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSTCLSLIFLVLMCCSQTPTKTSAFQGRH 6910
Nucleotide Sequence (321 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
214.6 | 1059.5 | 41% | 3.502e-54 | 65% | KT948710.1 | |
214.1 | 1002.2 | 40% | 4.811e-54 | 63% | KX274274.1 | |
214.1 | 1020.6 | 40% | 4.811e-54 | 67% | KX274277.1 | |
209.6 | 1053.1 | 40% | 1.152e-52 | 67% | AB277787.1 | |
213.7 | 1080.6 | 40% | 6.61e-54 | 67% | KX958435.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate VF1, partial genome
Sequence ID: KT948710.1 Length: 8716 Number of Matches: 7
Range 1: 7546 to 7863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 95/106(90%) | 0/106(0%) | Plus/Plus |
Query 2 LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA 319 LVG AIA ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLK LELARAQKA Subject 7546 LVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKALELARAQKA 7863
Range 2: 7545 to 7865 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.8 bits(456) | 0.0 | 96/107(90%) | 0/107(0%) | Minus/Minus |
Query 1 GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR 321 GAF*ALANSK LSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP* PLLLSTCARI +AIA PTR Subject 7545 GAF*ALANSKALSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPTR 7865
Range 3: 7549 to 7863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 79/105(75%) | 0/105(0%) | Minus/Minus |
Query 5 SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY 319 SFLSPC*L*SLKSGFICFI*LARQLSNLT HLTLSTTVINFINFLANP*SLQT+ H NC S +W+ IFNQY*LP YET L++T AV MCKD NC++Y Subject 7549 SFLSPC*L*SLKSGFICFI*LARQLSNLTCHLTLSTTVINFINFLANP*SLQTTQHLFNCSS*GLAWSAIFNQY*LPGGSYETALMVTTTAVYMCKDLDGNCNSY 7863
Range 4: 7556 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 80/103(78%) | 0/103(0%) | Plus/Plus |
Query 12 LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL 320 LQL SLHM TA++V IK VS* GSQY*LKI Q + L QL++C V*RL*GLAKKLMKLITVVERVKW+VKLESCLASQMKHMKPDLRL*S*QGLKKL Subject 7556 LQLPSKSLHM*TAVVVTIKAVS*EPPGSQY*LKIADQARP*LLQLKRCWVV*RL*GLAKKLMKLITVVERVKWQVKLESCLASQMKHMKPDLRL*S*QGLKKL 7864
Range 5: 7590 to 7865 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 73/92(79%) | 0/92(0%) | Plus/Plus |
Query 46 QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS 321 QQ*W* SRL HK +RGVN D*KL KR S* V EGFRG*PKS**N*LQLLKELNG+SNWKVAWRVK*SI*SQT* FRVSKGSKSS Subject 7590 QQ*W*PSRLFHKSHRGVNTD*KLRTKRGPSCYS*RGVGWSEGFRG*PKS**N*LQLLKELNGKSNWKVAWRVK*SI*SQT*GFRVSKGSKSS 7865
Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome
Sequence ID: KX274274.1 Length: 8725 Number of Matches: 7
Range 1: 7545 to 7862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 94/106(89%) | 0/106(0%) | Plus/Plus |
Query 2 LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA 319 LVG AIA ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQ+GKLPGESNEAYEARLK LELARAQKA Subject 7545 LVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQVGKLPGESNEAYEARLKALELARAQKA 7862
Range 2: 7544 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.8 bits(445) | 0.0 | 94/107(88%) | 0/107(0%) | Minus/Minus |
Query 1 GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR 321 GAF*ALANSK LSLASYAS DSPGNFP *LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP* PLLLSTCARI +AIA PTR Subject 7544 GAF*ALANSKALSLASYASLDSPGNFPT*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPTR 7864
Range 3: 7545 to 7862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 74/106(70%) | 0/106(0%) | Minus/Minus |
Query 2 SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAYK 319 SFLSPC*L*SLK GFICFI LARQLS LT HLTLSTTVINFIN LANP*SLQT+ H NC S +W TI NQY*LP YET L++ AV MCKD NC++Y+ Subject 7545 SFLSPC*L*SLKPGFICFIRLARQLSYLTCHLTLSTTVINFINLLANP*SLQTAQHLFNCGS*GLAWPTILNQY*LPGGSYETALMVATTAVYMCKDLDGNCNSYQ 7862
Range 4: 7555 to 7863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 75/103(73%) | 0/103(0%) | Plus/Plus |
Query 12 LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL 320 LQL SLHM TA++ IK VS* GSQY*L+IV Q + L QL++C V*RL*GLAK+LMKLITVVERVKW+VK ESCLAS MKHMKP LRL*S*QGLKKL Subject 7555 LQLPSKSLHM*TAVVATIKAVS*EPPGSQY*LRIVGQARP*LPQLKRCWAV*RL*GLAKRLMKLITVVERVKWQVK*ESCLASLMKHMKPGLRL*S*QGLKKL 7863
Range 5: 7589 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 68/92(74%) | 0/92(0%) | Plus/Plus |
Query 46 QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS 321 QQ*W SRL HK +RGVN D*+LW KR +S* V R EGFRG*PK **N*LQLLKELNG+S+ KVAWRV *SI*SQ * FRVSKGSKSS Subject 7589 QQ*WQPSRLFHKSHRGVNTD*ELWAKRGPSCHS*RGVGRSEGFRG*PKG**N*LQLLKELNGKSSRKVAWRV**SI*SQA*GFRVSKGSKSS 7864
Grapevine rupestris stem pitting associated virus isolate SK30, complete genome
Sequence ID: KX274277.1 Length: 8724 Number of Matches: 7
Range 1: 7545 to 7862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.1 bits(461) | 0.0 | 94/106(89%) | 0/106(0%) | Plus/Plus |
Query 2 LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA 319 LVG AIA ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQ+GKLPGESNEAYEARLK LELARAQKA Subject 7545 LVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQVGKLPGESNEAYEARLKALELARAQKA 7862
Range 2: 7544 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 95/107(89%) | 0/107(0%) | Minus/Minus |
Query 1 GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR 321 GAF*ALANSK LSLASYASFDSPGNFP *LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP* PLLLSTCARI +AIA PTR Subject 7544 GAF*ALANSKALSLASYASFDSPGNFPT*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPTR 7864
Range 3: 7548 to 7862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 76/105(72%) | 0/105(0%) | Minus/Minus |
Query 5 SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY 319 S LSP *L*SLKSGFICFI*LA LSNLT HLTLSTTVINFINFLANP*SLQT+ H NC S +W TI NQY*LP PYET L++T AV MCKD NC++Y Subject 7548 SLLSPR*L*SLKSGFICFI*LAW*LSNLTCHLTLSTTVINFINFLANP*SLQTAQHLFNCSS*GLAWPTILNQY*LPGGPYETALMVTTTAVYMCKDLDGNCNSY 7862
Range 4: 7555 to 7863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 77/103(75%) | 0/103(0%) | Plus/Plus |
Query 12 LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL 320 LQL SLHM TA++V IK VS*G GSQY*L+IV Q + L QL++C V*RL*GLAKKLMKLITVVERVKW+VKLES ASQMKHMKPDLRL*S*+GLK+L Subject 7555 LQLPSKSLHM*TAVVVTIKAVS*GPPGSQY*LRIVGQARP*LLQLKRCWAV*RL*GLAKKLMKLITVVERVKWQVKLESYQASQMKHMKPDLRL*S*RGLKRL 7863
Range 5: 7589 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 70/92(76%) | 0/92(0%) | Plus/Plus |
Query 46 QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS 321 QQ*W* SRL HKG+RGVN D*+LW KR S* V R EGFRG*PKS**N*LQLLKELNG+S+WKV RVK*SI*SQT* FRVS+GSK S Subject 7589 QQ*W*PSRLFHKGHRGVNTD*ELWAKRGPSCYS*RGVGRSEGFRG*PKS**N*LQLLKELNGKSSWKVTRRVK*SI*SQT*GFRVSEGSKGS 7864
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1
Sequence ID: AB277787.1 Length: 2876 Number of Matches: 7
Range 1: 1801 to 2118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 92/106(87%) | 0/106(0%) | Plus/Plus |
Query 2 LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA 319 LVG AIA ILAHVDS++G ++GC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEID+SC*KS*MASQ+GKLPGESNEAYEARLK LELARAQKA Subject 1801 LVGVAIAIQILAHVDSSSGSHRGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDHSC*KS*MASQVGKLPGESNEAYEARLKALELARAQKA 2118
Range 2: 1800 to 2120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.3 bits(446) | 0.0 | 94/107(88%) | 0/107(0%) | Minus/Minus |
Query 1 GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR 321 GAF*ALANSK LSLASYASFDSPGNFP *LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP PLLLSTCARI +AIA PTR Subject 1800 GAF*ALANSKALSLASYASFDSPGNFPT*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQPRWLPLLLSTCARIWMAIATPTR 2120
Range 3: 1804 to 2118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 79/105(75%) | 0/105(0%) | Minus/Minus |
Query 5 SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY 319 S LSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQT+ H NC S +W TI NQY*LP PYET + T AV MCKD NC++Y Subject 1804 SLLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTAQHLFNCSS*GLAWPTILNQY*LPGGPYETASMATTTAVYMCKDLDGNCNSY 2118
Range 4: 1811 to 2119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 80/103(78%) | 0/103(0%) | Plus/Plus |
Query 12 LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL 320 LQL SLHM TA++V I+ VS*G GSQY*L+IV Q + L QL++C V*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLK+L Subject 1811 LQLPSKSLHM*TAVVVAIEAVS*GPPGSQY*LRIVGQARP*LLQLKRCWAV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKRL 2119
Range 5: 1845 to 2120 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.4 bits(322) | 0.0 | 73/92(79%) | 0/92(0%) | Plus/Plus |
Query 46 QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS 321 QQ*W* SRL HKG+RGVN D*+LW KR S* V R EGFRG*PKS**N* QLLKELNGES+WKVAWRVK*SI*SQT* FRVSKGSK S Subject 1845 QQ*W*PSRLFHKGHRGVNTD*ELWAKRGPSCYS*RGVGRSEGFRG*PKS**N*SQLLKELNGESSWKVAWRVK*SI*SQT*GFRVSKGSKGS 2120
Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome
Sequence ID: KX958435.1 Length: 8743 Number of Matches: 7
Range 1: 7546 to 7863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.7 bits(460) | 0.0 | 94/106(89%) | 0/106(0%) | Plus/Plus |
Query 2 LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA 319 +VG AIA ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLK LELARAQKA Subject 7546 IVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKALELARAQKA 7863
Range 2: 7548 to 7865 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 95/106(90%) | 0/106(0%) | Minus/Minus |
Query 4 GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPT 321 GAF*ALANSK LSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP* PLLLSTCARI +AIA PT Subject 7548 GAF*ALANSKALSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPT 7865
Range 3: 7549 to 7863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.1 bits(389) | 0.0 | 81/105(77%) | 0/105(0%) | Minus/Minus |
Query 5 SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY 319 SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQT+ H NC S +W TIFNQY*LP YET L++T AV MCKD NC++Y Subject 7549 SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTTQHLFNCSS*GLAWPTIFNQY*LPGGSYETALMVTTTAVYMCKDLDGNCNSY 7863
Range 4: 7556 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 82/103(80%) | 0/103(0%) | Plus/Plus |
Query 12 LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL 320 LQL SLHM TA++V IK VS* GSQY*LKIV Q + L QL++C V*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL Subject 7556 LQLPSKSLHM*TAVVVTIKAVS*EPPGSQY*LKIVGQARP*LLQLKRCWVV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL 7864
Range 5: 7590 to 7865 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 75/92(82%) | 0/92(0%) | Plus/Plus |
Query 46 QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS 321 QQ*W* SRL HK +RGVN D*KLW KR S* V EGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT* FRVSKGSKSS Subject 7590 QQ*W*PSRLFHKSHRGVNTD*KLWAKRGPSCYS*RGVGWSEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*GFRVSKGSKSS 7865
Nucleotide Sequence (184 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
141.7 | 703.8 | 24% | 6.129e-33 | 92% | KX274275.1 | |
140.4 | 664.7 | 24% | 1.589e-32 | 93% | AB277783.1 | |
130.3 | 592.3 | 18% | 1.721e-29 | 69% | AY368590.1 | |
123.4 | 264.8 | 33% | 2.021e-27 | 56% | AY881626.1 | |
123.4 | 260.3 | 33% | 2.021e-27 | 54% | JX559646.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9
Range 1: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 59/60(98%) | 0/60(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 182 E LVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI Subject 6541 EILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 6720
Range 2: 6539 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 61/61(100%) | 0/61(0%) | Plus/Minus |
Query 2 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 184 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL Subject 6539 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 6721
Range 3: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.2 bits(293) | 0.0 | 59/60(98%) | 0/60(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 182 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDE+F Subject 6541 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENF 6720
Range 4: 6540 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 34/34(100%) | 0/34(0%) | Minus/Plus |
Query 82 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 183 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI Subject 6540 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 6641
Range 5: 6675 to 6722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 16/16(100%) | 0/16(0%) | Minus/Plus |
Query 1 *K*FNKRTCH*GREFH 48 *K*FNKRTCH*GREFH Subject 6675 *K*FNKRTCH*GREFH 6722
Range 6: 6611 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 36/37(97%) | 0/37(0%) | Minus/Plus |
Query 2 SLWVFIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS 112 SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTR+S Subject 6611 SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS 6721
Range 7: 6539 to 6571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 11/11(100%) | 0/11(0%) | Minus/Plus |
Query 152 *IRP*VFGMV* 184 *IRP*VFGMV* Subject 6539 *IRP*VFGMV* 6571
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8
Range 1: 797 to 976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 58/60(97%) | 0/60(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 182 ETLVLSDKFSY*T FTTTRNA+NNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI Subject 797 ETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 976
Range 2: 797 to 976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 58/60(97%) | 0/60(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 182 D*ALS+WHGVIIMNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIRELVTEDESF Subject 797 D*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 976
Range 3: 795 to 977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 57/61(93%) | 0/61(0%) | Plus/Minus |
Query 2 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 184 *NSRPQ*QVLLLN FYHYQER EQQLEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL Subject 795 *NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL 977
Range 4: 796 to 978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 57/61(93%) | 0/61(0%) | Minus/Plus |
Query 1 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIXXXXXXXXXXW*K*FNKRTCH*GREFH 183 RLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQISSCCS RSW*W*K FNKRTCH*GREFH Subject 796 RLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFH 978
Range 5: 867 to 977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 35/37(95%) | 0/37(0%) | Minus/Plus |
Query 2 SLWVFIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS 112 SLWVFIACSDFQLLF AFLVVVK V**ENLSLRTRVS Subject 867 SLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS 977
Range 6: 795 to 827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 11/11(100%) | 0/11(0%) | Minus/Plus |
Query 152 *IRP*VFGMV* 184 *IRP*VFGMV* Subject 795 *IRP*VFGMV* 827
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8
Range 1: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 57/60(95%) | 0/60(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 182 D*ALSVWH IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDESF Subject 6541 D*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF 6720
Range 2: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 53/60(88%) | 0/60(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 182 ETLV S++ SY TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN MPNT*GLI Subject 6541 ETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLI 6720
Range 3: 6539 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 55/61(90%) | 0/61(0%) | Plus/Minus |
Query 2 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL 184 *NSR Q* LL NYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**S++AKHLRPNL Subject 6539 *NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL 6721
Range 4: 6540 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 32/34(94%) | 0/34(0%) | Minus/Plus |
Query 82 RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 183 RLGLKCLA DYYE*LS*SFVYV*VCGCL*RAQI Subject 6540 RLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQI 6641
Range 5: 6675 to 6722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Plus |
Query 1 *K*FNKRTCH*GREFH 48 *K*F+KR +* REFH Subject 6675 *K*FDKRAHY*RREFH 6722
Range 6: 6611 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 33/37(89%) | 0/37(0%) | Minus/Plus |
Query 2 SLWVFIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS 112 SLWVFIACSDFQLLFIAFLVVVKVV**E+ L+TRVS Subject 6611 SLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS 6721
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 3
Range 1: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 50/60(83%) | 0/60(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 182 D*ALS+WH + IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF Subject 6541 D*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF 6720
Range 2: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 37/60(62%) | 0/60(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 182 ETLVL D Y*TT TT R M N+WK +H NT+KL+ Q FN +IHN TMPNT*GLI Subject 6541 ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKLEG*QCFNQIIHNTQTMPNT*GLI 6720
Range 3: 6542 to 6718 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 33/59(56%) | 0/59(0%) | Plus/Minus |
Query 5 NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPN 181 NSRP LLNY YH Q Y +LEI*A KH T+ T L* +YS* S++AK+LRPN Subject 6542 NSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*TRRLTML*PNYS*YSNNAKYLRPN 6718
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3
Range 1: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 50/60(83%) | 0/60(0%) | Minus/Plus |
Query 3 D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 182 D*ALS+WH + IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF Subject 6541 D*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF 6720
Range 2: 6541 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 36/60(60%) | 0/60(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI 182 ETLVL D Y*TT TT R M N+WK +H NT+K + Q FN +IHN TMPNT*GLI Subject 6541 ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKFEG*QCFNQIIHNTQTMPNT*GLI 6720
Range 3: 6542 to 6718 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 32/59(54%) | 0/59(0%) | Plus/Minus |
Query 5 NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPN 181 NSRP LLNY YH Q Y +LEI*A KH + T L* +YS* S++AK+LRPN Subject 6542 NSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*IRRLTML*PNYS*YSNNAKYLRPN 6718
Nucleotide Sequence (199 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
150.0 | 750.5 | 28% | 2.933e-35 | 92% | KX274275.1 | |
148.6 | 716.9 | 28% | 7.605e-35 | 92% | AB277783.1 | |
137.6 | 653.8 | 27% | 1.554e-31 | 69% | AY368590.1 | |
130.3 | 265.8 | 33% | 2.347e-29 | 52% | JX559646.1 | |
129.8 | 292.3 | 32% | 3.224e-29 | 59% | AF026278.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9
Range 1: 6526 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 63/65(97%) | 0/65(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 197 E LVLSDKFSY*TTFTTTRNAMNNNWKSEHAI THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ Subject 6526 EILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 6720
Range 2: 6524 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 65/66(98%) | 0/66(0%) | Plus/Minus |
Query 2 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT 199 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT Subject 6524 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT 6721
Range 3: 6526 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 63/65(97%) | 0/65(0%) | Minus/Plus |
Query 3 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 197 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVG YSVLRFPVVVHSVPGSGKSSLIRELVTEDE+F Subject 6526 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENF 6720
Range 4: 6525 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 38/39(97%) | 0/39(0%) | Minus/Plus |
Query 82 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG*L*RAQI 198 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG L*RAQI Subject 6525 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI 6641
Range 5: 6675 to 6722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 16/16(100%) | 0/16(0%) | Minus/Plus |
Query 1 *K*FNKRTCH*GREFH 48 *K*FNKRTCH*GREFH Subject 6675 *K*FNKRTCH*GREFH 6722
Range 6: 6611 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 35/37(95%) | 0/37(0%) | Minus/Plus |
Query 2 SLWVIIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS 112 SLWV IACSDFQLLFIAFLVVVKVV**ENLSLRTR+S Subject 6611 SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS 6721
Range 7: 6524 to 6571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 16/16(100%) | 0/16(0%) | Minus/Plus |
Query 152 GCLKL*IRP*VFGMV* 199 GCLKL*IRP*VFGMV* Subject 6524 GCLKL*IRP*VFGMV* 6571
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8
Range 1: 782 to 976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 62/65(95%) | 0/65(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 197 ETLVLSDKFSY*T FTTTRNA+NNNWKSEHAI THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ Subject 782 ETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 976
Range 2: 782 to 976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 63/65(97%) | 0/65(0%) | Minus/Plus |
Query 3 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 197 LFEAID*ALS+WHGVIIMNNLVKALSTFEFVG YSVLRFPVVVHSVPGSGKSSLIRELVTEDESF Subject 782 LFEAID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 976
Range 3: 780 to 977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Minus |
Query 2 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT 199 *NSRPQ*QVLLLN FYHYQER EQQLEI*ARY +PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTT Subject 780 *NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTT 977
Range 4: 781 to 978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 62/66(94%) | 0/66(0%) | Minus/Plus |
Query 1 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG*L*RAQIXXXXXXXXXXW*K*FNKRTCH*GREFH 198 VV*SYRLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQISSCCS RSW*W*K FNKRTCH*GREFH Subject 781 VV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFH 978
Range 5: 867 to 977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 34/37(92%) | 0/37(0%) | Minus/Plus |
Query 2 SLWVIIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS 112 SLWV IACSDFQLLF AFLVVVK V**ENLSLRTRVS Subject 867 SLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS 977
Range 6: 780 to 827 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 16/16(100%) | 0/16(0%) | Minus/Plus |
Query 152 GCLKL*IRP*VFGMV* 199 GCLKL*IRP*VFGMV* Subject 780 GCLKL*IRP*VFGMV* 827
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9
Range 1: 6526 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 61/65(94%) | 0/65(0%) | Minus/Plus |
Query 3 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 197 LFEAID*ALSVWH IIMNNLVKALSTFEFVG YSVLRFPVVVHSVPGSGKSSLIREL+TEDESF Subject 6526 LFEAID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF 6720
Range 2: 6526 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 57/65(88%) | 0/65(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ 197 ETLV S++ SY TTFTTTRNAMNNNWKSEHAI THKLKRRQSFN*VIHNN MPNT*GLIYSFKQ Subject 6526 ETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQ 6720
Range 3: 6527 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 58/65(89%) | 0/65(0%) | Plus/Minus |
Query 2 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQT 196 *NSR Q* LL NYFYHYQERYEQQLEI*ARY HPQTQT*TKL*LSYS**S++AKHLRPNL*LQT Subject 6527 *NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL*LQT 6721
Range 4: 6525 to 6641 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 35/39(90%) | 0/39(0%) | Minus/Plus |
Query 82 VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG*L*RAQI 198 +V*SYRLGLKCLA DYYE*LS*SFVYV*VCG L*RAQI Subject 6525 IV*SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQI 6641
Range 5: 6675 to 6722 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 11/16(69%) | 0/16(0%) | Minus/Plus |
Query 1 *K*FNKRTCH*GREFH 48 *K*F+KR +* REFH Subject 6675 *K*FDKRAHY*RREFH 6722
Range 6: 6611 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 32/37(86%) | 0/37(0%) | Minus/Plus |
Query 2 SLWVIIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS 112 SLWV IACSDFQLLFIAFLVVVKVV**E+ L+TRVS Subject 6611 SLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS 6721
Range 7: 6527 to 6568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 12/14(86%) | 0/14(0%) | Minus/Plus |
Query 155 CLKL*IRP*VFGMV 196 CLKL*IRP*VFG++ Subject 6527 CLKL*IRP*VFGII 6568
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3
Range 1: 6526 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 53/65(82%) | 0/65(0%) | Minus/Plus |
Query 3 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 197 LFEA+D*ALS+WH + IMNNLVKALSTFEF+G +SVL+FPVV+HSVPGSGKSSLIREL++EDESF Subject 6526 LFEAVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF 6720
Range 2: 6529 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.9 bits(168) | 0.0 | 37/64(58%) | 0/64(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFK 194 ETLVL D Y*TT TT R M N+WK +H T+K + Q FN +IHN TMPNT*GLI FK Subject 6529 ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKFEG*QCFNQIIHNTQTMPNT*GLINRFK 6720
Range 3: 6530 to 6718 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 33/63(52%) | 0/63(0%) | Plus/Minus |
Query 5 NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQ 193 NSRP LLNY YH Q Y +LEI*A H + T L* +YS* S++AK+LRPN LQ Subject 6530 NSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*IRRLTML*PNYS*YSNNAKYLRPNQPLQ 6718
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 3
Range 1: 6526 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 54/65(83%) | 0/65(0%) | Minus/Plus |
Query 3 LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF 197 LFEAID*ALS+WH + IMNNLVKALSTFEFVG +SVL+FPVV+HSVPGSGKSSLIREL++EDE+F Subject 6526 LFEAID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENF 6720
Range 2: 6529 to 6720 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 38/64(59%) | 0/64(0%) | Plus/Minus |
Query 3 ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFK 194 E L+L + Y*TTFTTTR+ MN+ WK +H T+KLK Q FN*+IHN MPNT*GLI FK Subject 6529 EILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK 6720
Range 3: 6530 to 6721 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 40/64(62%) | 0/64(0%) | Plus/Minus |
Query 2 *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQ 193 *NS P+ LLNYFYHYQ YE LEI*A H QTQ T L*L+YS* S++AK+LRPN LQ Subject 6530 *NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQ 6721
Nucleotide Sequence (509 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
377.3 | 2031.8 | 26% | 7.951e-103 | 94% | AB277783.1 | |
376.3 | 2025.4 | 27% | 1.501e-102 | 95% | KX274275.1 | |
369.9 | 1769.3 | 26% | 1.281e-100 | 74% | AY368590.1 | |
362.1 | 1160.3 | 26% | 2.833e-98 | 46% | AF026278.1 | |
361.2 | 1188.7 | 28% | 5.347e-98 | 47% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 7
Range 1: 398 to 877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
377.3 bits(817) | 0.0 | 154/160(96%) | 0/160(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG 508 G S AFAGDDMCANSRLR KTEHEGFLNMICLKAKV FVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WHGVIIMNNLVKALSTFEFVG Subject 398 GSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHGVIIMNNLVKALSTFEFVG 877
Range 2: 402 to 878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.5 bits(752) | 0.0 | 151/159(95%) | 0/159(0%) | Minus/Minus |
Query 33 HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR 509 +PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTTQKLSTSSC YF*LGTAHSCS LQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHK GL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHR QKQ+TR Subject 402 YPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTTQKLSTSSCVYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTR 878
Range 3: 401 to 877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.0 bits(751) | 0.0 | 150/159(94%) | 0/159(0%) | Minus/Minus |
Query 32 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACKSK*PG 508 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLV ISN*EPHTVVV FNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTK VCDK HLSFKANHI*EPFMFSL+P*SAVSAHVIA KS * G Subject 401 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVFISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LG 877
Range 4: 397 to 876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
343.3 bits(743) | 0.0 | 153/160(96%) | 0/160(0%) | Minus/Minus |
Query 28 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP 507 PTNSNVDKALTKLFIIITPCQ LKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQ VGFVTN TLALRQIIFRNPSCSVL LNLLLAHMSSPAKA D P Subject 397 PTNSNVDKALTKLFIIITPCQILKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDP 876
Range 5: 403 to 876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.0 bits(727) | 0.0 | 151/158(96%) | 0/158(0%) | Plus/Plus |
Query 34 RVICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG 507 RV CFC R*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKP+ LWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*S LQLCAVPS*K* QDEVLNFWVV*SYRLGLK LAWCDYYE*LS*SFVYV*VCG Subject 403 RVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*TQDEVLNFWVV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCG 876
Range 6: 402 to 686 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.9 bits(454) | 0.0 | 89/95(94%) | 0/95(0%) | Plus/Plus |
Query 33 PGHLLLQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ 317 P LLL+AMTCALTAD*GLRLNMKGS*I*FALKLRC LSQT FVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ Subject 402 PSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ 686
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7
Range 1: 6142 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
376.3 bits(815) | 0.0 | 154/160(96%) | 0/160(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG 508 G S AFAGDDMCANSRLR KTEHEGFLNMICLKAKV FVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG Subject 6142 GSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG 6621
Range 2: 6146 to 6622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
350.2 bits(758) | 0.0 | 152/159(96%) | 0/159(0%) | Minus/Minus |
Query 33 HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR 509 HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCS LQLPLHSSFQL TRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHK GL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHR QKQ+T+ Subject 6146 HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLPTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTQ 6622
Range 3: 6151 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
345.2 bits(747) | 0.0 | 149/157(95%) | 0/157(0%) | Minus/Minus |
Query 38 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACKSK* 508 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVV FNFLFIHHFN QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTK VCDK HLSFKANHI*EPFMFSL+P*SAVSAHVIA KS * Subject 6151 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCFNFLFIHHFNCQLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN* 6621
Range 4: 6141 to 6620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.4 bits(741) | 0.0 | 153/160(96%) | 0/160(0%) | Minus/Minus |
Query 28 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP 507 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISI NSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQ VGFVTN TLALRQIIFRNPSCSVL LNLLLAHMSSPAKA D P Subject 6141 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIANSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDP 6620
Range 5: 6150 to 6620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
337.4 bits(730) | 0.0 | 151/157(96%) | 0/157(0%) | Plus/Plus |
Query 37 VICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG 507 V CFC R*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKP+ LWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRV N*NDE*RGS*S LQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG Subject 6150 VNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVGN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG 6620
Range 6: 6155 to 6430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
202.7 bits(436) | 0.0 | 87/92(95%) | 0/92(0%) | Plus/Plus |
Query 42 LLLQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ 317 LLL+AMTCALTAD*GLRLNMKGS*I*FALKLRC LSQT FVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS Q Subject 6155 LLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASWQ 6430
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7
Range 1: 6142 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
369.9 bits(801) | 0.0 | 153/160(96%) | 0/160(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG 508 G S AFAGDDMCANSRLR KTEHEGFLNMICLKAKV FVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWH IIMNNLVKALSTFEFVG Subject 6142 GSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHY*IIMNNLVKALSTFEFVG 6621
Range 2: 6141 to 6620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.8 bits(685) | 0.0 | 144/160(90%) | 0/160(0%) | Minus/Minus |
Query 28 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP 507 PTNSNVDKALTKLFIII CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSP+L*A*DTSIA*LSMQFSRLPISRAMQILSQ++ GFLKIPSLNKHHPQ VGFVTN TLALRQIIFR PSCSVL LNLL AH+SSPA A D P Subject 6141 PTNSNVDKALTKLFIII**CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDP 6620
Range 3: 6145 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
295.7 bits(639) | 0.0 | 128/159(81%) | 0/159(0%) | Minus/Minus |
Query 32 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACKSK*PG 508 THKLKRRQSFN*VIHNN MPNT*GLIYSFKQ RN*A HLVLISN EPHTVVVRFNFLFIHHFN*QLAQPVGIG+LNCI+INA+ QV HFTSNANSLPN+L FLKDPFF+QTPSTK VCD+ + S KANHI E FM S +P*SAV AH+IA K * G Subject 6145 THKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVVRFNFLFIHHFN*QLAQPVGIGHLNCIIINAIFQVAHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LG 6621
Range 4: 6146 to 6622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
287.9 bits(622) | 0.0 | 130/159(82%) | 0/159(0%) | Minus/Minus |
Query 33 HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR 509 HPQTQT*TKL*LSYS**S++AKHLRPNL*LQT QKLS SSCAYF* GTAHSCSALQLPLHSSFQLTTRP CRHR PQLH+YQC+ PG PFHEQCKFSPK VS*RSLL*TNTIHK GL*+I * *GKSY G LH Q *ALICC RT HR Q Q+TR Subject 6146 HPQTQT*TKL*LSYS**SNNAKHLRPNL*LQTIQKLSISSCAYF*PGTAHSCSALQLPLHSSFQLTTRPTCRHRTPQLHNYQCNFPGCPFHEQCKFSPKSTEVS*RSLL*TNTIHKM*GL*RIVL*P*GKSYSGNLHAQF*ALICCLRTYHRPQTQLTR 6622
Range 5: 6147 to 6620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
281.5 bits(608) | 0.0 | 130/158(82%) | 0/158(0%) | Plus/Plus |
Query 34 RVICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG 507 RV C C R*+VR QQIKA*+* *R P+YDLP* * I HKP LWMVFV RRDL*ET LGENLHCS*NG PG+LH**LCN*G+LCLQ GRVVN*NDE*RGS*SALQLCAVP *K*AQDE+LNFW+V*SYRLGLKCLA DYYE*LS*SFVYV*VCG Subject 6147 RVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ETSVDLGENLHCS*NGQPGKLH**LCN*GVLCLQVGRVVN*NDE*RGS*SALQLCAVPG*K*AQDEMLNFWIV*SYRLGLKCLALLDYYE*LS*SFVYV*VCG 6620
Range 6: 6146 to 6430 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 70/95(74%) | 0/95(0%) | Plus/Plus |
Query 33 PGHLLLQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ 317 P L L+AM CA TAD*GL+L+MK S*I*FAL+L+ SQT FVDGVC KKGSLRN + FGREFALLVKW TW+ ALI MQLR PMPTGWASCQ Subject 6146 PSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLS*FGREFALLVKWATWKIALIIMQLRCPMPTGWASCQ 6430
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 7
Range 1: 6142 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
362.1 bits(784) | 0.0 | 148/160(92%) | 0/160(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG 508 G S AFAGDDMCAN RLR KTEHEGFLNMICLKAKV FV+NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALSTFEFVG Subject 6142 GSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSTFEFVG 6621
Range 2: 6141 to 6620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 125/160(78%) | 0/160(0%) | Minus/Minus |
Query 28 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP 507 PTNSNVD ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+D+SPS A*+TSIA*LS+QFSRLPIS AM I SQ++ GFLKIPSLNKHHPQ VG TN TLALRQI+FR PSCSVL NL LAHMSSPA A D P Subject 6141 PTNSNVDNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMDSSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLRLAHMSSPANAIDSEP 6620
Range 3: 6160 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 76/154(49%) | 0/154(0%) | Minus/Minus |
Query 47 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACK 508 T+KLK Q FN*+IHN MPNT*GLI FK N*A HL+L+ + E +T+++ +F HHFN L+QPV IG L I++N +LQVTH SNA LP+ L L+DPF K TPS + + +K +L KANH+ + M +P ++S HVI CK Subject 6160 TYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQPVRIGDLYRIIVNTILQVTHLPSNAYPLPD*LRLLEDPFLK*TPSAECGIGNKLNLGLKANHVQKTLMLCFKPQPSISTHVITCK 6621
Range 4: 6162 to 6617 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.1 bits(295) | 0.0 | 75/152(49%) | 0/152(0%) | Plus/Plus |
Query 49 CRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VC 504 CR *HV * ++ A*+ * ++DLP* G++C + + L MVF+* RDL E +LG ++HC +G*PGEL+* LC+ G+LC+ AGR ++*ND+ S L LC + + A DE+LNF +*S LGLK LA +YYE* S*S V +*VC Subject 6162 CR**HVC*SKVAA*NRA*GFSEHDLP*GQGSVCFQSHILRMVFI*GRDLQEASINLGADMHC*GDG*PGELY*QLCDRGLLCVPAGRAIH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVNI*VC 6617
Range 5: 6146 to 6622 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 73/159(46%) | 0/159(0%) | Minus/Minus |
Query 33 HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR 509 H QTQ T L*L+YS* S++AK+LRPN LQ KLS SS A * H+ + L SSFQ PA HR P H+ Q +SPGYP QC +P+ + S*RSL * NTI + Q P *GKS H *A * TCH LQ +T+ Subject 6146 HLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWIALPAGTHRRPLSHNCQYNSPGYPSP*QCISAPRLIEAS*RSLP*INTIRRMWDWKQTEPWP*GKSCSENPHALF*AATFD*HTCHHLQMLLTQ 6622
Range 6: 6161 to 6424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 43/88(49%) | 0/88(0%) | Plus/Plus |
Query 48 LQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS 311 LQ MTC L GL+ +M+ * *FAL+ R L DGV L+KGS R+ N G +ALL +WVTWR L M+ R PM TGW S Subject 6161 LQVMTCVLIEGCGLKQSMRVF*T*FALRPRFSLFPIPHSADGVYLRKGSSRSLN*SGSGYALLGRWVTWRIVLTIMR*RSPMRTGWES 6424
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 7
Range 1: 6142 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
361.2 bits(782) | 0.0 | 146/160(91%) | 0/160(0%) | Plus/Plus |
Query 29 GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG 508 G S AFAGDDMCAN RLR KTEHEGFLNMICLKAKV FV+NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEA+D*ALS+WH + IMNNLVKALSTFEF+G Subject 6142 GSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAVD*ALSIWHCLSIMNNLVKALSTFEFIG 6621
Range 2: 6141 to 6620 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
274.2 bits(592) | 0.0 | 127/160(79%) | 0/160(0%) | Minus/Minus |
Query 28 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP 507 P NS VD ALTKLFII+ CQ LKA*S ASN PEIEHLILCLFLTRN TQL*CASTSSS IIS+D+SP+L A*DTSIA*LSMQFSRLPIS AM I SQ+S GFLKIPSLNKHHPQ VG TN TLALRQI+FR PSCSVL NLLLAH+SSPA A D P Subject 6141 PINSKVDNALTKLFIILKQCQILKA*STASNRPEIEHLILCLFLTRNLTQL*CASTSSSVIISMDSSPNLYA*DTSIA*LSMQFSRLPISLAMHIRSQIS*GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLLLAHISSPANAIDSEP 6620
Range 3: 6160 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 78/154(51%) | 0/154(0%) | Minus/Minus |
Query 47 THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACK 508 T+K + Q FN +IHN TMPNT*GLI FK N*APHL+L+ N*EPHT+VV + L HHF+ L Q + IG+L I+INAVL + H + A SLPN L FL+D K PST+ V +K +L KA+H+ E M +P +VS H+I CK Subject 6160 TYKFEG*QCFNQIIHNTQTMPNT*GLINRFK*A*N*APHLMLVPN*EPHTIVVCLHLLLCHHFDG*LTQSICIGHLYRIIINAVL*IAHLSGYAYSLPN*LRFLEDSLLK*APSTECGVRNKLNLGLKADHVQETLMLCFKPQPSVSTHIIPCK 6621
Range 4: 6138 to 6602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 78/155(50%) | 0/155(0%) | Plus/Plus |
Query 25 FGSRVICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFV 489 +G RV CR *+V *Q++ A*+ * P++DLP* G++C P+ LWMV +* +L ET T+LG N+H +G ELH**LC+ G+LC+ G ++ ND+ G LQLC VPS*+ A DEVLNF +*S LGLK LA +YYE* *S V Subject 6138 YGFRVNSVCRG*YVC*QKVAA*NRA*GFPEHDLP*GQGSVCF*PHILWMVLI*GGNLQETSTNLGANMHSQRDGQSRELH**LCDRGVLCI*IG*AIHRNDDRGGGGGTLQLCEVPS*EQA*DEVLNFRPI*SG*LGLKYLALFEYYE*FG*SIV 6602
Range 5: 6140 to 6601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.6 bits(270) | 0.0 | 75/154(49%) | 0/154(0%) | Minus/Minus |
Query 27 TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTRDP 488 T L* +YS* S++AK+LRPN LQ KLSTSS A *LGT+H+CS P SSF+ P HR P H+YQCSS P C F+PK V VS*R * +TIH+ G Q P *G+S G H *A C* T H LQ +T +P Subject 6140 TML*PNYS*YSNNAKYLRPNQPLQIGLKLSTSSYACS*LGTSHNCSVPPPPPLSSFRWIAHPIYMHRTPLSHNYQCSSLDCPSLWLCIFAPKLVEVS*RFPP*ISTIHRMWG*KQTEPWP*GRSCSGNPHALF*AATFC*HTYHPLQTLLTLNP 6601
Range 6: 6161 to 6424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 41/88(47%) | 0/88(0%) | Plus/Plus |
Query 48 LQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS 311 LQ M C LT GL+ +M+ S* * AL+ R L T VDG L++ S RN N FG E+A +W RTALI M+ R PM W S Subject 6161 LQGMICVLTEGCGLKQSMRVS*T*SALRPRFSLFLTPHSVDGAYLRRESSRNLN*FGSEYA*PERWAI*RTALIIMR*RCPMHIDWVS 6424
Nucleotide Sequence (472 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
329.1 | 1051.0 | 28% | 2.164e-88 | 47% | KR054734.1 | |
342.9 | 1624.6 | 26% | 1.575e-92 | 84% | KX274275.1 | |
339.2 | 1551.9 | 29% | 1.998e-91 | 78% | AY368590.1 | |
338.3 | 1530.7 | 26% | 3.772e-91 | 79% | KR528585.1 | |
330.1 | 929.7 | 30% | 1.147e-88 | 44% | KR054735.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome
Sequence ID: KR054734.1 Length: 8753 Number of Matches: 8
Range 1: 4021 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.1 bits(712) | 0.0 | 136/149(91%) | 0/149(0%) | Minus/Plus |
Query 3 GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 449 G+ G SDEKFNDSKPWL+G+STSDIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDD CKV KAGKSKKEGWDVVTFEVFLRK+ LKAGHCVIFDEVQLFPPGYIDLCLL IRSDAFISLAGDPCQ Subject 4021 GLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKKEGWDVVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQ 4467
Range 2: 4047 to 4469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 111/141(79%) | 0/141(0%) | Plus/Minus |
Query 1 L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF 423 L*QGSPAREMKASLRM R +S+*PGGNS*TSSK+TQ PAFR FLR TS VTTSQPSFFDLPAF TL SSIS+SLLIEFA+A LGET VTN PSDLF+KLLYRKL PAP VPSTTVNS L+SEVD P S G ESLNF Subject 4047 L*QGSPAREMKASLRMVNRQRSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTTSQPSFFDLPAFATLQLSSISKSLLIEFARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLISEVDIPESHGLESLNF 4469
Range 3: 4039 to 4257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 43/73(59%) | 0/73(0%) | Plus/Minus |
Query 213 IIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT 431 IIHF++ F+*IC*SP *+K Y+F+FR LH+ALV + +S K KH+CQ S FD+RS*+S +P L IVK LIT Subject 4039 IIHFQVSFN*IC*SPSG*NKGYEFAFRPLHKALVQKAFTSSKGAKHDCQLSRFDIRS*YS*EPWLGIVKLLIT 4257
Range 4: 4300 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 29/56(52%) | 0/56(0%) | Plus/Minus |
Query 3 LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIP 170 LT ITSKRNES+T+ +T + + RE LN IK+ AM L C+FPK++FK +N+P Subject 4300 LTGITSKRNESITSYG*QTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFKGHNVP 4467
Range 5: 4020 to 4400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 63/127(50%) | 0/127(0%) | Minus/Plus |
Query 70 GCVWEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL 450 G W K**E+*RF+A+A ++NF*+Q R+DS AW++W W + +QEL+EE+*R+I N+C T G SKFN K NG**+ +G Q+K+ LG C +*S *E+ +P+G LR+ ** S +PS L Subject 4020 GLNWCDK**EV*RFQAMALRNINF*YQISRVDSRAWHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSKFN*KRLGNG**LQSGKGWQIKKRRLGRCDL*SVS*ENCKPEGRPLRHF**GSTVPSRL 4400
Range 6: 4019 to 4468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 74/150(49%) | 0/150(0%) | Plus/Minus |
Query 2 FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQTHP 451 FD+DHQQEK*K H+ D + EG E HQ+ RN P GL S* LQ Q P+ L C P +HPF F*LNLL+P V+Q L+I LQ SS*SSC + +Q Q QA+LS L +* QKL +A A NR* SHH Q P Subject 4019 FDRDHQQEK*KHHFVWLTDKGQYSLEGTVEPHQK*RNGLPSGLQFS*ETLQRSQRPNLLFLICQPLPLCNYHPFPSLF*LNLLEPFWVKQRLRICLQTSS*SSCTESFYQLQRCQARLSTLEI*YQKLIFLRAMAWNR*TSHHLSHQLSP 4468
Range 7: 4040 to 4189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 281 VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 430 VMR+LTI S G E QLL SN E+*Q CL L L + TRA *R LK N Subject 4040 VMRSLTIPSHGSQEYQLLISNLES*QSCLAPLELVKAFCTRAL*RGLKAN 4189
Range 8: 4223 to 4393 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 27/57(47%) | 0/57(0%) | Minus/Plus |
Query 77 QIQSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSL 247 QIQ K KWM+ + R A+Q+++ G L LK LGK Q *R IA LM+F+ SL Subject 4223 QIQLKETWKWMIVAKWQRLANQKKKVGTL*PLKCFLGKLQT*RQAIASFLMRFNCSL 4393
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8
Range 1: 4021 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.9 bits(742) | 0.0 | 144/149(97%) | 0/149(0%) | Minus/Plus |
Query 3 GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 449 G+ G SDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ Subject 4021 GLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 4467
Range 2: 4047 to 4469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 137/141(97%) | 0/141(0%) | Plus/Minus |
Query 1 L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF 423 L*QGSPAREMKASLR+TRRH+SM*PGGNS*TSSKITQ*PAFRPVTFLRKTS VTTSQPSFFDLPAFTTLHSSSISRSLLIEFA+ARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF Subject 4047 L*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF 4469
Range 3: 4029 to 4400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
272.8 bits(589) | 0.0 | 113/124(91%) | 0/124(0%) | Minus/Plus |
Query 70 WEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL 441 W K**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AG SKFNQKG RNG* V*G EGRQ+KEGGLGCCY+*S P*ES+RPKGWSLR+L**SSAIPSWL Subject 4029 WRDK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQKGPRNG*RV*GGEGRQIKEGGLGCCYL*SLP*ESYRPKGWSLRDL**SSAIPSWL 4400
Range 4: 4039 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 70/72(97%) | 0/72(0%) | Plus/Minus |
Query 216 IHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT 431 IHF +PFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT Subject 4039 IHF*VPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT 4254
Range 5: 4297 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 48/57(84%) | 0/57(0%) | Plus/Minus |
Query 3 LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPA 173 LTRITSKR+ESVT ++KKT*I VTRRE*LNFIKD+AMTSL*AC+FPKE+FK NNIPA Subject 4297 LTRITSKRDESVTADNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNNIPA 4467
Range 6: 4022 to 4468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.0 bits(537) | 0.0 | 130/149(87%) | 0/149(0%) | Plus/Minus |
Query 2 FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQTH 448 FDKDHQQE+*KRH *QEDI+ CNQEGIAELHQR RNDQPLGL*LS*G+LQ *QHPSPPSL CLPS PYT HPF PF*LNLL+PA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHH Q++ Subject 4022 FDKDHQQER*KRHCG*QEDIDRCNQEGIAELHQRSRNDQPLGL*LS*GRLQR*QHPSPPSLICLPSPPYTLHPFLGPF*LNLLEPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHLSRQSN 4468
Range 7: 4040 to 4189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 50/50(100%) | 0/50(0%) | Minus/Plus |
Query 281 VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 430 VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN Subject 4040 VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 4189
Range 8: 4223 to 4411 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 54/63(86%) | 0/63(0%) | Minus/Plus |
Query 59 QIQSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY 247 QIQSKG KWM SVR *RQA+QRRRAGMLL LK SLGK QA*RLVIA*SLMKFSYSLLVT IY Subject 4223 QIQSKGT*KWMKSVRW*RQANQRRRAGMLLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY 4411
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9
Range 1: 4021 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
339.2 bits(734) | 0.0 | 143/149(96%) | 0/149(0%) | Minus/Plus |
Query 3 GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 449 G+ G SDEKFNDSKPWLAGVSTS IKQRELTVVLGTFGAGKSFL+KSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ Subject 4021 GLTGVISDEKFNDSKPWLAGVSTSGIKQRELTVVLGTFGAGKSFLHKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 4467
Range 2: 4047 to 4469 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
284.7 bits(615) | 0.0 | 135/141(96%) | 0/141(0%) | Plus/Minus |
Query 1 L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF 423 L*QGSPAREMKASLRMTRRH+SM*PGGNS TSSKITQ*PAFRPVTFLRKTS VTTSQPSFFDLPAFTTLHSSSISRSLLIEFA+ARLGETNVTNFPSDLFMKLL RKLFPAPNVPSTTVNSLCLM EVDTPASQGFESLNF Subject 4047 L*QGSPAREMKASLRMTRRHRSM*PGGNSWTSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLCRKLFPAPNVPSTTVNSLCLMPEVDTPASQGFESLNF 4469
Range 3: 4029 to 4400 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.9 bits(526) | 0.0 | 105/124(85%) | 0/124(0%) | Minus/Plus |
Query 70 WEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL 441 W K**EI*RFKALACWSV F HQTKRIDS AW+IWGWKEFP QELHEEI*RKICNICLT*AG SKFNQKG NG**V*GSEGRQ+KEGGLGC Y+*S *ES+RPKGWSLR+L**S AIP WL Subject 4029 WRDK**EI*RFKALACWSVYFWHQTKRIDSRAWHIWGWKEFPTQELHEEI*RKICNICLT*AGSSKFNQKGPGNG**V*GSEGRQIKEGGLGCRYL*SLS*ESYRPKGWSLRDL**SPAIPPWL 4400
Range 4: 4039 to 4257 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 67/73(92%) | 0/73(0%) | Plus/Minus |
Query 213 IIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT 431 IIHF++PFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKC KH+CQFSLFD RS HSSKPRL*IVKFLIT Subject 4039 IIHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCAKHDCQFSLFDARSRHSSKPRL*IVKFLIT 4257
Range 5: 4297 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 46/57(81%) | 0/57(0%) | Plus/Minus |
Query 3 LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPA 173 LTRITSKR+ESVT NDKKT*I VTR E*L+FIKD+AMTSL*AC+FPK++FK N+IPA Subject 4297 LTRITSKRDESVTANDKKT*IDVTRGE*LDFIKDHAMTSL*ACNFPKKDFKGNDIPA 4467
Range 6: 4028 to 4468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 125/147(85%) | 0/147(0%) | Plus/Minus |
Query 2 FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQ 442 FDKDHQQE+*KRH E*QEDI+ CNQ GIA LHQR RNDQPLGL*LS* +LQ *+HPSPPSL CLPSLPYTHHPF PF*LNLL+PA*VRQMLQIFLQISS*SSC+GNSFQPQM QA+LSILFV*CQK TLQQAKALNR*ISHH Q Subject 4028 FDKDHQQER*KRHCE*QEDIDRCNQGGIAGLHQRSRNDQPLGL*LS*ERLQR*RHPSPPSLICLPSLPYTHHPFPGPF*LNLLEPA*VRQMLQIFLQISS*SSCVGNSFQPQMCQARLSILFV*CQK*TLQQAKALNR*ISHHLSRQ 4468
Range 7: 4040 to 4189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 46/50(92%) | 0/50(0%) | Minus/Plus |
Query 281 VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 430 VMRNLTIQSLGLLEC LL SNKEN*Q CL HLGLERVSYTRAS*RDLKEN Subject 4040 VMRNLTIQSLGLLECLLLASNKEN*QSCLAHLGLERVSYTRAS*RDLKEN 4189
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 8
Range 1: 4003 to 4449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
338.3 bits(732) | 0.0 | 142/149(95%) | 0/149(0%) | Minus/Plus |
Query 3 GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 449 G+ G SDEKFNDS+PWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ Subject 4003 GLTGVISDEKFNDSRPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEGCKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 4449
Range 2: 4029 to 4451 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
290.2 bits(627) | 0.0 | 136/141(96%) | 0/141(0%) | Plus/Minus |
Query 1 L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF 423 L*QGSPAREMKASLR+TRRH+SM*PGGNS*TSSKITQ*PAFRPVTFLRKTS VTTSQPSFFDLPAFTTLH SSISRSLLIEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQG ESLNF Subject 4029 L*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHPSSISRSLLIEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGLESLNF 4451
Range 3: 4011 to 4382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
246.7 bits(532) | 0.0 | 104/124(84%) | 0/124(0%) | Minus/Plus |
Query 70 WEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL 441 W K EI* FKALACWSVNF H TKRIDSC WYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKG +G* V*G EGRQ+KEGGLGCC++*SF *ES+RPKGWSLR+L**SSAIP WL Subject 4011 WCDKRREI**FKALACWSVNFRH*TKRIDSCTWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGPGDG*GV*GGEGRQIKEGGLGCCHL*SFS*ESYRPKGWSLRDL**SSAIPPWL 4382
Range 4: 4024 to 4239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.9 bits(323) | 0.0 | 62/72(86%) | 0/72(0%) | Plus/Minus |
Query 213 IIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLI 428 +IH ++PFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTK+NCQFSLF+V S*HSSKPR *I+KFL+ Subject 4024 LIHLQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKYNCQFSLFNVGS*HSSKPRP*IIKFLV 4239
Range 5: 4279 to 4449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 47/57(82%) | 0/57(0%) | Plus/Minus |
Query 3 LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPA 173 LTRITSKR+ESVT N+KKT*I VTR E*LNFIKD+AMTSL*AC+FPK+NFK +NIPA Subject 4279 LTRITSKRDESVTANNKKT*IDVTRGE*LNFIKDHAMTSL*ACNFPKKNFKGDNIPA 4449
Range 6: 4010 to 4450 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
231.1 bits(498) | 0.0 | 125/147(85%) | 0/147(0%) | Plus/Minus |
Query 2 FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQ 442 FDKDHQQE+*KRH E*QEDI+ CNQ GIAELHQR RNDQPLGL*LS* KLQ *QHPSPPSL CLPS PYT HP PF*LNLLKPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQ QLSILFV*C+KLTLQQAKALN *IS Q Subject 4010 FDKDHQQER*KRHCE*QEDIDRCNQGGIAELHQRSRNDQPLGL*LS*EKLQR*QHPSPPSLICLPSPPYTPHPSPGPF*LNLLKPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQVQLSILFV*CRKLTLQQAKALNH*ISRRLSHQ 4450
Range 7: 4028 to 4171 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 43/48(90%) | 0/48(0%) | Minus/Plus |
Query 281 RNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 424 RNL IQ LGLLECQL T NKEN*QL LVHLGLERVSYTRAS*RDLKEN Subject 4028 RNLMIQGLGLLECQLPTLNKEN*QLYLVHLGLERVSYTRAS*RDLKEN 4171
Range 8: 4205 to 4393 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 50/63(79%) | 0/63(0%) | Minus/Plus |
Query 59 QIQSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY 247 QIQSKG +WM VR *RQA+QRRRAGML LKF LGK QA*RLVIA*SLMKFSYS LVT IY Subject 4205 QIQSKGTWRWMRGVRW*RQANQRRRAGMLSPLKFFLGKLQA*RLVIA*SLMKFSYSPLVTSIY 4393
Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome
Sequence ID: KR054735.1 Length: 8754 Number of Matches: 9
Range 1: 4021 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.1 bits(714) | 0.0 | 136/149(91%) | 0/149(0%) | Minus/Plus |
Query 3 GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ 449 G+ G SDEKFNDSKPWL+G+ST DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDD+CKV KAGKSKKEGWDVVTFEVFLRKV GLKAGHC+IFDEVQLFPPGYIDLCLL IRSDAFISLAGDPCQ Subject 4021 GLTGVISDEKFNDSKPWLSGISTKDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDDCKVAKAGKSKKEGWDVVTFEVFLRKVDGLKAGHCIIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQ 4467
Range 2: 4047 to 4460 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.7 bits(484) | 0.0 | 111/138(80%) | 0/138(0%) | Plus/Minus |
Query 10 GSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF 423 GSPAR+MKASLR+ +HKSM*PGGNS*TSSK+ Q PAF+P TFLR TS VTTS PSF DLPAF TL SSSISRSLLIE AKARLGET VTNFPSDLFMKLL RKLFPAP VPSTTVNSL +S VD P S GFESLNF Subject 4047 GSPARDMKASLRIVSKHKSM*PGGNS*TSSKMIQWPAFKPSTFLRNTSKVTTSHPSFLDLPAFATLQSSSISRSLLIELAKARLGETKVTNFPSDLFMKLL*RKLFPAPKVPSTTVNSLGFISFVDIPESHGFESLNF 4460
Range 3: 4042 to 4467 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 62/142(44%) | 0/142(0%) | Plus/Minus |
Query 3 LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPAXXXXXXXXXXXXXIIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLI 428 L +TSKR E +T N ++T*I VTR E*LN +K+ + L + P+++ K +IP+L L A +LT+IIHF+I FD*+ *S ++ K S HEALV ET S PK +HNCQ S + +S +P L*I++ I Subject 4042 LAWVTSKRYEGITANCEQT*INVTRGE*LNLVKNDTVACLQTINLPEKHLKSYHIPSLFLRFASFCHLTIIIHFQISFD*VG*SSSWGNESNKLSL*PFHEALVKETFSCPKSPEHNCQLSWLYIFRGYSGEPWL*IIELFI 4467
Range 4: 4059 to 4307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 39/83(47%) | 0/83(0%) | Minus/Plus |
Query 163 FKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGC 411 FKA+A +++ ++ KR+DSCA WG K+FP+QELHE++ K+C FS+ NQK S NG**+*G + Q+ E G+GC Subject 4059 FKAMALRNIHERYKAKRVDSCARDFWGRKKFPLQELHEKVRGKVCYFRFPKTSFSQLNQKRSGNG**L*GGKSWQI*ERGMGC 4307
Range 5: 4367 to 4468 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 18/34(53%) | 0/34(0%) | Plus/Minus |
Query 2 FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQR 103 F HQQE *+ H E +IN CNQ GIAE Q+ Subject 4367 FGMGHQQEI*RHHCEL*ANINQCNQGGIAEPRQK 4468
Range 6: 4043 to 4159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 17/39(44%) | 0/39(0%) | Plus/Minus |
Query 311 CIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISH 427 C GN F PQ +AQLS L ++A ALN * H Subject 4043 CKGNFFLPQKSRAQLSTLLALYLSWIFRRAMALNH*TFH 4159
Range 7: 4217 to 4264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 11/16(69%) | 0/16(0%) | Plus/Minus |
Query 206 YTHHPFRDPF*LNLLK 253 Y HHPF D F*L+ LK Subject 4217 YNHHPFPDLF*LSWLK 4264
Range 8: 4043 to 4189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 22/49(45%) | 0/49(0%) | Minus/Plus |
Query 281 MRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN 427 M++ IQS G E ++E+*QLC LG E+VS+TRAS*+ +E+ Subject 4043 MKSSMIQSHGSPEYPRKI*SQES*QLCSGLLGQEKVSFTRAS*KGQRES 4189
Range 9: 4229 to 4411 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 29/61(48%) | 0/61(0%) | Minus/Plus |
Query 59 QSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY 241 QSK I KWMM VR + A+ R+R GM L+ G+ *R L +FSYS LVT IY Subject 4229 QSKEIWKWMMIVRWQKLANLRKRDGMW*LLRCFSGRLMV*RQATVSFLTRFSYSPLVTLIY 4411
Nucleotide Sequence (151 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
89.5 | 371.9 | 30% | 2.704e-17 | 82% | AB277783.1 | |
90.9 | 382.4 | 44% | 1.043e-17 | 82% | KX274275.1 | |
88.6 | 283.3 | 26% | 5.104e-17 | 82% | AY368590.1 | |
82.6 | 130.0 | 26% | 3.17e-15 | 61% | AB277784.1 | |
82.6 | 129.1 | 26% | 3.17e-15 | 52% | AB277786.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 5
Range 1: 881 to 994 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 36/38(95%) | 0/38(0%) | Minus/Minus |
Query 2 AGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAI 115 AGRKGYETLVLSDKFSY*T FTTTRNA+NNNWKSEHAI Subject 881 AGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAI 994
Range 2: 881 to 997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 38/39(97%) | 0/39(0%) | Plus/Plus |
Query 2 YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL 118 YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAG+ Subject 881 YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGV 997
Range 3: 882 to 992 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 35/37(95%) | 0/37(0%) | Minus/Minus |
Query 3 RP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY 113 RP*RL*NSRPQ*QVLLLN FYHYQER EQQLEI*ARY Subject 882 RP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARY 992
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5
Range 1: 6625 to 6738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 37/38(97%) | 0/38(0%) | Minus/Minus |
Query 2 AGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAI 115 AGRKGYE LVLSDKFSY*TTFTTTRNAMNNNWKSEHAI Subject 6625 AGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAI 6738
Range 2: 6625 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 2 YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL 118 YSVLRFPVVVHSVPGSGKSSLIRELVTEDE+FIAFTAG+ Subject 6625 YSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGV 6741
Range 3: 6626 to 6757 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 39/44(89%) | 0/44(0%) | Minus/Minus |
Query 3 GCVWDRGRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY 134 G V RP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY Subject 6626 GWVCQERRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY 6757
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 4
Range 1: 6625 to 6741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 37/39(95%) | 0/39(0%) | Plus/Plus |
Query 2 YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL 118 YSVLRFPVVVHSVPGSGKSSLIREL+TEDESFIAFTAG+ Subject 6625 YSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGV 6741
Range 2: 6625 to 6738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 31/38(82%) | 0/38(0%) | Minus/Minus |
Query 2 AGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAI 115 AGR+ YETLV S++ SY TTFTTTRNAMNNNWKSEHAI Subject 6625 AGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAI 6738
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OE8
Sequence ID: AB277784.1 Length: 2876 Number of Matches: 2
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hiz6
Sequence ID: AB277786.1 Length: 2876 Number of Matches: 2