Queries
Nucleotide Sequence (463 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
316.8 | 1328.9 | 37% | 1.113e-84 | 75% | DQ787959.1 | |
318.1 | 1290.8 | 39% | 4.249e-85 | 65% | KF013822.1 | |
316.8 | 1365.0 | 39% | 1.102e-84 | 67% | KF013776.1 | |
316.8 | 1365.0 | 39% | 1.102e-84 | 67% | KF013798.1 | |
316.8 | 1354.9 | 38% | 1.102e-84 | 67% | KF013852.1 |
Alignments
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 7
Range 1: 6418 to 6843 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.8 bits(685) | 0.0 | 136/142(96%) | 0/142(0%) | Plus/Plus |
Query 11 GLMGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 436 GLMGQ+ARRGEIRAVIEELVLARAELSEDTS+ GYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNAS+KTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLA+KMTRS Subject 6418 GLMGQFARRGEIRAVIEELVLARAELSEDTSTGGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASKKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLATKMTRS 6843
Range 2: 6418 to 6840 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.3 bits(540) | 0.0 | 110/141(78%) | 0/141(0%) | Minus/Minus |
Query 11 PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTHES 433 PSHL+C LR+R+ LSH+NQEIVSVLSE FAHLPQ PLDRSLAY T+ SHA +HASHVYFTPRV SL T IRSYYIYLSIMSRL AS DQGD+PEESIQVH SVVA A VLTQLR REHE YH SDLPPPC LTHES Subject 6418 PSHLSC*LRIRTQLSHDNQEIVSVLSERFAHLPQSRPLDRSLAYSRTESSHARYHASHVYFTPRV*TSLLTRIRSYYIYLSIMSRLLASPDQGDVPEESIQVHCSVVAPCARVLTQLRSREHEFFYHCSDLPPPCELTHES 6840
Range 3: 6531 to 6842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.8 bits(482) | 0.0 | 99/104(95%) | 0/104(0%) | Minus/Minus |
Query 124 DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI 435 DLVIL+ANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VLMR TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI Subject 6531 DLVILVANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLMRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI 6842
Range 4: 6504 to 6842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.8 bits(432) | 0.0 | 85/113(75%) | 0/113(0%) | Plus/Plus |
Query 97 HQQ*RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V 435 H+ LRPN VPEYSLRV+RLGR+*Q+GDSLWRGRYSRT*C+*EDW P G*NKRG*HG HEN+ C KRGTCQGG+ EADVRT+RSKRLRFPGC+G*V V+AV DD*V Subject 6504 HEHRGLRPNNVPEYSLRVHRLGRD*QEGDSLWRGRYSRT*CE*EDWSRP*G*NKRG*HGSAHENSQCGCKRGTCQGGDSEADVRTVRSKRLRFPGCHG*VGYVYAVSN*DD*V 6842
Range 5: 6417 to 6464 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 15/16(94%) | 0/16(0%) | Plus/Plus |
Query 10 RTHGSVRKEGGDPSGD 57 RTHGSVRKEGGDPS D Subject 6417 RTHGSVRKEGGDPSSD 6464
Range 6: 6497 to 6841 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.5 bits(357) | 0.0 | 91/115(79%) | 0/115(0%) | Minus/Minus |
Query 90 T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSSXXXXXXXXXXXHNESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH 434 T*SS L TA T+ TQP*QPGNRKRFER VRTSAS PP*QVPRL H* FSC PC*PRLFYP G QSSY H*VLLYLPLHNESP C* RPRR TRREYSGT FGRS C CPH Subject 6497 T*SS*LLTAYTYPTQP*QPGNRKRFERTVRTSASESPP*QVPRLQPH*EFSCALPC*PRLFYP*GLDQSSYSH*VLLYLPLHNESPSC*SRPRRCTRREYSGTLFGRSPLCSCPH 6841
Range 7: 6503 to 6757 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 66/85(78%) | 0/85(0%) | Plus/Plus |
Query 96 TPAVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN 350 T A ATTE CT*ILSSG SPWS LA+RRLIMER*I**DLM+V RL T GVK*TWLAW* A*E V+ *ARDLSRG+ *GRCAN Subject 6503 TRAQGATTEQCT*ILSSGTSPWSGLARRRLIMER*I**DLMRVRRLV*TLGVK*TWLAW*RA*ELSVRL*ARDLSRGRL*GRCAN 6757
Grapevine virus A clone LVCH92 07_c05 coat protein (CP) gene, complete cds
Sequence ID: KF013822.1 Length: 597 Number of Matches: 9
Range 1: 1 to 420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
318.1 bits(688) | 0.0 | 137/140(98%) | 0/140(0%) | Plus/Plus |
Query 17 MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 436 MGQ+ARRGEIRAVIEELVLARAELSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS Subject 1 MGQFARRGEIRAVIEELVLARAELSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 420
Range 2: 1 to 417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.3 bits(518) | 0.0 | 102/139(73%) | 0/139(0%) | Minus/Minus |
Query 17 PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH 433 PSHL CQL +R+ LSH+NQ+IVSVLSEWFAHL QG P DRSLAY + SHA +HASHVYFTPRV ASLPT IRSYYIYLSI+ RL A DQGD+P+ESI VHSSVV+ A +LTQLR REHE LY SDLPPPC LTH Subject 1 PSHLTCQLCIRTQLSHDNQKIVSVLSEWFAHLSQGRPFDRSLAYGSAESSHACYHASHVYFTPRV*ASLPTSIRSYYIYLSIVCRLLARPDQGDVPKESI*VHSSVVSLGARILTQLRSREHEFLYDCSDLPPPCELTH 417
Range 3: 108 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
222.8 bits(480) | 0.0 | 99/104(95%) | 0/104(0%) | Minus/Minus |
Query 124 DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI 435 DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VLMR TMLATFILPLGSRPVFLLALGPTISTSP* VAFLLVPTKA+YPKRVFRYI Subject 108 DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLMRATMLATFILPLGSRPVFLLALGPTISTSP*CVAFLLVPTKAMYPKRVFRYI 419
Range 4: 96 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.6 bits(390) | 0.0 | 79/108(73%) | 0/108(0%) | Plus/Plus |
Query 112 LRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V 435 +RPNYVP+YSL V+RLGR+ Q+GD+LWRGRYSRT*C *EDWP P G*NKRG*HG HEN+ KRGT Q G+PE DVRTIRSKRLRF GC+G*V V+ VGK DD*V Subject 96 IRPNYVPKYSLWVHRLGRDEQEGDTLWRGRYSRT*C**EDWPRP*G*NKRG*HGSTHENSQRCRKRGTGQRGDPETDVRTIRSKRLRFSGCHG*VGYVYTVGK*DD*V 419
Range 5: 3 to 35 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 10/11(91%) | 0/11(0%) | Plus/Plus |
Query 19 GSVRKEGGDPS 51 GS+RKEGGDPS Subject 3 GSIRKEGGDPS 35
Range 6: 209 to 418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 52/70(74%) | 0/70(0%) | Minus/Minus |
Query 225 T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS 434 T*SS LPT T+ TQP*QP NRKRFERMVRTS SG P * VPRL * FSC PC*PRLFYP G GQSS Subject 209 T*SSYLPTVYTYPTQP*QPENRKRFERMVRTSVSGSPL*PVPRLRQR*EFSCVLPC*PRLFYP*GLGQSS 418
Range 7: 74 to 166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 20/31(65%) | 0/31(0%) | Minus/Minus |
Query 90 SPFC*FRPRRYTRREYSGT*FGRSLHCWCPH 182 SP C RPRR T+REY GT*FGR C PH Subject 74 SPSCSSRPRRCTQREYLGT*FGRIPRCSYPH 166
Range 8: 86 to 337 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 61/84(73%) | 0/84(0%) | Plus/Plus |
Query 102 AVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCANH 353 A + TTELCT*ILS G SPWS A+RR MER*I**DLM VGRLA T GVK*TWLAW* A*E *ARD S+G+P* RCANH Subject 86 APRDTTELCT*ILSLGTSPWSGRARRRHTMER*I**DLMLVGRLA*TLGVK*TWLAW*HA*ELSALP*ARDRSKGRP*DRCANH 337
Grapevine virus A clone CSOT2_2c coat protein (CP) gene, complete cds
Sequence ID: KF013776.1 Length: 597 Number of Matches: 9
Range 1: 1 to 420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.8 bits(685) | 0.0 | 136/140(97%) | 0/140(0%) | Plus/Plus |
Query 17 MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 436 MGQ+ARRGEIRAVIEELVLARA+LSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS Subject 1 MGQFARRGEIRAVIEELVLARADLSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 420
Range 2: 1 to 417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 109/139(78%) | 0/139(0%) | Minus/Minus |
Query 17 PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH 433 PSHL CQL +R+ LSH+NQEIVSVLSE FAHLPQ CP DRSLAY CTK H +HASHVYFTPR+QASLPT IR YYIYL IMSRL A DQGD+PEESIQVH SVVAF A +LTQ+RPREHE LYHRSDLPPPC LTH Subject 1 PSHLTCQLCIRTQLSHDNQEIVSVLSERFAHLPQSCPFDRSLAYGCTKSPHTRYHASHVYFTPRIQASLPTSIRPYYIYLPIMSRLLACPDQGDVPEESIQVHCSVVAFCARILTQVRPREHEFLYHRSDLPPPCELTH 417
Range 3: 108 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 99/104(95%) | 0/104(0%) | Minus/Minus |
Query 124 DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI 435 DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VL+R TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI Subject 108 DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLIRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI 419
Range 4: 93 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 84/109(77%) | 0/109(0%) | Plus/Plus |
Query 109 RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V 435 RLRPN VPEYSLRV+RLGR+ Q+GDSLW GRYSR *C *EDWPG G*NKRG*HG +E++*CS KRGTCQ GN EADVRT+RSKRLRFPGC+G*V V+ VGK DD*V Subject 93 RLRPNNVPEYSLRVHRLGRDKQEGDSLWGGRYSRA*C**EDWPGS*G*NKRG*HGSAYEDS*CSRKRGTCQRGNSEADVRTVRSKRLRFPGCHG*VGYVYTVGK*DD*V 419
Range 5: 3 to 41 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 12/13(92%) | 0/13(0%) | Plus/Plus |
Query 19 GSVRKEGGDPSGD 57 GS+RKEGGDPSGD Subject 3 GSIRKEGGDPSGD 41
Range 6: 209 to 418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 54/70(77%) | 0/70(0%) | Minus/Minus |
Query 225 T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS 434 T*SS LPT T+ TQP*QPGNRKRFER VRTSAS LP *QVPRL LH* S PC*PRLFYP PGQSS Subject 209 T*SSYLPTVYTYPTQP*QPGNRKRFERTVRTSASELPL*QVPRLRLH*ESSYALPC*PRLFYP*DPGQSS 418
Range 7: 74 to 172 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 25/33(76%) | 0/33(0%) | Minus/Minus |
Query 90 NESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH 188 NESP C RPRR TRREYSGT FGRSL C PH Subject 74 NESPSCLSRPRRCTRREYSGTLFGRSLLCSYPH 172
Range 8: 86 to 334 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 65/83(78%) | 0/83(0%) | Plus/Plus |
Query 102 AVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN 350 A KATTE CT*ILSSG SPWS A+RRLIM R*I** LM VGRLAW GVK*TWLAW* * LVQ *ARDLS+GQ *GRCAN Subject 86 AQKATTEQCT*ILSSGTSPWSGQARRRLIMGR*I**GLMLVGRLAWILGVK*TWLAW*RV*GLLVQP*ARDLSKGQL*GRCAN 334
Grapevine virus A clone SLWZF1 11c coat protein (CP) gene, complete cds
Sequence ID: KF013798.1 Length: 597 Number of Matches: 9
Range 1: 1 to 420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.8 bits(685) | 0.0 | 136/140(97%) | 0/140(0%) | Plus/Plus |
Query 17 MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 436 MGQ+ARRGEIRAVIEELVLARA+LSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS Subject 1 MGQFARRGEIRAVIEELVLARADLSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 420
Range 2: 1 to 417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 109/139(78%) | 0/139(0%) | Minus/Minus |
Query 17 PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH 433 PSHL CQL +R+ LSH+NQEIVSVLSE FAHLPQ CP DRSLAY CTK H +HASHVYFTPR+QASLPT IR YYIYL IMSRL A DQGD+PEESIQVH SVVAF A +LTQ+RPREHE LYHRSDLPPPC LTH Subject 1 PSHLTCQLCIRTQLSHDNQEIVSVLSERFAHLPQSCPFDRSLAYGCTKSPHTRYHASHVYFTPRIQASLPTSIRPYYIYLPIMSRLLACPDQGDVPEESIQVHCSVVAFCARILTQVRPREHEFLYHRSDLPPPCELTH 417
Range 3: 108 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 99/104(95%) | 0/104(0%) | Minus/Minus |
Query 124 DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI 435 DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VL+R TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI Subject 108 DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLIRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI 419
Range 4: 93 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 84/109(77%) | 0/109(0%) | Plus/Plus |
Query 109 RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V 435 RLRPN VPEYSLRV+RLGR+ Q+GDSLW GRYSR *C *EDWPG G*NKRG*HG +E++*CS KRGTCQ GN EADVRT+RSKRLRFPGC+G*V V+ VGK DD*V Subject 93 RLRPNNVPEYSLRVHRLGRDKQEGDSLWGGRYSRA*C**EDWPGS*G*NKRG*HGSAYEDS*CSRKRGTCQRGNSEADVRTVRSKRLRFPGCHG*VGYVYTVGK*DD*V 419
Range 5: 3 to 41 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 12/13(92%) | 0/13(0%) | Plus/Plus |
Query 19 GSVRKEGGDPSGD 57 GS+RKEGGDPSGD Subject 3 GSIRKEGGDPSGD 41
Range 6: 209 to 418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 54/70(77%) | 0/70(0%) | Minus/Minus |
Query 225 T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS 434 T*SS LPT T+ TQP*QPGNRKRFER VRTSAS LP *QVPRL LH* S PC*PRLFYP PGQSS Subject 209 T*SSYLPTVYTYPTQP*QPGNRKRFERTVRTSASELPL*QVPRLRLH*ESSYALPC*PRLFYP*DPGQSS 418
Range 7: 74 to 172 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 25/33(76%) | 0/33(0%) | Minus/Minus |
Query 90 NESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH 188 NESP C RPRR TRREYSGT FGRSL C PH Subject 74 NESPSCLSRPRRCTRREYSGTLFGRSLLCSYPH 172
Range 8: 86 to 334 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.2 bits(280) | 0.0 | 65/83(78%) | 0/83(0%) | Plus/Plus |
Query 102 AVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN 350 A KATTE CT*ILSSG SPWS A+RRLIM R*I** LM VGRLAW GVK*TWLAW* * LVQ *ARDLS+GQ *GRCAN Subject 86 AQKATTEQCT*ILSSGTSPWSGQARRRLIMGR*I**GLMLVGRLAWILGVK*TWLAW*RV*GLLVQP*ARDLSKGQL*GRCAN 334
Grapevine virus A clone PLCF95 413_c05 coat protein (CP) gene, complete cds
Sequence ID: KF013852.1 Length: 597 Number of Matches: 9
Range 1: 1 to 420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
316.8 bits(685) | 0.0 | 136/140(97%) | 0/140(0%) | Plus/Plus |
Query 17 MGQYARRGEIRAVIEELVLARAELSEDTSSEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVTRMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 436 MGQ+ARRGEIRAVIEELVLARA+LSEDTS+EGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMV RMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS Subject 1 MGQFARRGEIRAVIEELVLARADLSEDTSTEGYDRTMYLNTLFGYIALVGTSKKATHYGEVDIVGPNASRKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGATLRQMCEPFAQNAYDFLVVMAELGTYTQLASKMTRS 420
Range 2: 1 to 417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 108/139(78%) | 0/139(0%) | Minus/Minus |
Query 17 PSHLACQLRVRS*LSHNNQEIVSVLSEWFAHLPQGCPLDRSLAYRCTKCSHAGHHASHVYFTPRVQASLPTCIRSYYIYLSIMSRLFASSDQGDIPEESIQVHSSVVAFTAGVLTQLRPREHELLYHRSDLPPPCVLTH 433 PSHL CQL +R+ LSH+NQ+IVSVLSE FAHLPQ CP DRSLAY CTK H +HASHVYFTPR+Q SLPT IR YYIYL IMSRL A DQGD+PEESIQVH SVVAF A VLTQ+RPREHE LYHRSDLPPPC LTH Subject 1 PSHLTCQLCIRTQLSHDNQKIVSVLSERFAHLPQSCPFDRSLAYGCTKSPHTRYHASHVYFTPRIQTSLPTSIRPYYIYLPIMSRLLACPDQGDVPEESIQVHCSVVAFCARVLTQVRPREHEFLYHRSDLPPPCELTH 417
Range 3: 108 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 99/104(95%) | 0/104(0%) | Minus/Minus |
Query 124 DLVILLANCVYVPNSAITTRKS*AF*ANGSHICLRVAPLTGPSLTAALSVLMRVTMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAIYPKRVFRYI 435 DLVILLANCVYVPNSA+TTRKS*AF*ANGSHICLRVAPLTGPSLTAAL VL+R TMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKA+YPKRVFRYI Subject 108 DLVILLANCVYVPNSAMTTRKS*AF*ANGSHICLRVAPLTGPSLTAALRVLIRATMLATFILPLGSRPVFLLALGPTISTSP**VAFLLVPTKAMYPKRVFRYI 419
Range 4: 81 to 419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 83/113(73%) | 0/113(0%) | Plus/Plus |
Query 97 HQQ*RLRPNYVPEYSLRVYRLGRN*QKGDSLWRGRYSRT*CK*EDWPGPEG*NKRG*HGDPHENT*CSGKRGTCQGGNPEADVRTIRSKRLRFPGCYG*VRNVHAVGKQDD*V 435 H+ RLRPN VPEYSLRV+RLGR+ Q+GDSLW GRYSR *C *EDW G G*NKRG*HG +E++*CS KRGTCQ GN EADVRT+RSKRLRF GC+G*V V+ VGK DD*V Subject 81 HEHRRLRPNNVPEYSLRVHRLGRDKQEGDSLWGGRYSRA*C**EDWSGS*G*NKRG*HGSAYEDS*CSRKRGTCQRGNSEADVRTVRSKRLRFSGCHG*VGYVYTVGK*DD*V 419
Range 5: 3 to 41 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 12/13(92%) | 0/13(0%) | Plus/Plus |
Query 19 GSVRKEGGDPSGD 57 GS+RKEGGDPSGD Subject 3 GSIRKEGGDPSGD 41
Range 6: 209 to 418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 52/70(74%) | 0/70(0%) | Minus/Minus |
Query 225 T*SSCLPTACTFLTQP*QPGNRKRFERMVRTSASGLPP*QVPRLPLH*VFSCGSPC*PRLFYPSGPGQSS 434 T*SS LPT T+ TQP*QP NRKRFER VRTSAS LP *QVPRL LH* S PC*PRLFYP P QSS Subject 209 T*SSYLPTVYTYPTQP*QPENRKRFERTVRTSASELPL*QVPRLRLH*ESSYALPC*PRLFYP*DPDQSS 418
Range 7: 74 to 172 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 26/33(79%) | 0/33(0%) | Minus/Minus |
Query 90 NESPFC*FRPRRYTRREYSGT*FGRSLHCWCPH 188 NESP C RPRR TRREYSGT FGRSL C CPH Subject 74 NESPSCLSRPRRCTRREYSGTLFGRSLLCSCPH 172
Range 8: 80 to 334 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 65/85(76%) | 0/85(0%) | Plus/Plus |
Query 96 TPAVKATTELCT*ILSSGISPWSELAKRRLIMER*I**DLMQVGRLAWTRGVK*TWLAW*PA*EHLVQR*ARDLSRGQP*GRCAN 350 T A KATTE CT*ILSSG SPWS A+RRLIM R*I** LM VGRL W GVK*TWLAW* * LVQ *ARDLS+GQ *GRCAN Subject 80 TRAQKATTEQCT*ILSSGTSPWSGQARRRLIMGR*I**GLMLVGRLVWILGVK*TWLAW*RV*GLLVQP*ARDLSKGQL*GRCAN 334
Nucleotide Sequence (945 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
490.4 | 2597.3 | 27% | 1.526e-136 | 52% | JX559641.1 | |
442.3 | 2752.3 | 27% | 8.401e-145 | 55% | DQ855088.1 | |
452.9 | 2723.0 | 27% | 2.512e-142 | 49% | DQ787959.1 | |
320.0 | 1431.6 | 19% | 6.803e-90 | 37% | DQ855082.2 | |
292.0 | 1129.3 | 26% | 2.183e-133 | 34% | KC962564.1 |
Alignments
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 10
Range 1: 5196 to 6134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
490.4 bits(1064) | 0.0 | 228/313(73%) | 0/313(0%) | Minus/Plus |
Query 2 ELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHGYRAXXXXXXGVPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV 940 EL +FLRLGLDRSTLG+GSIESLP+D+CI+LLEGLR+LG++SIDNVLHVLG GEPDRFEI KVFR+QGVAISEA QLGLTKS SFSPRPVSLILDDLLDRIAR ASFLPVDLGAV GELVINFERSRLSVDLY+NNKKVCSRI YS GD YV RRFSGFKGIITR+S*DKGL C+ E+QG S+Q A RGC+ DR++* G+S+E++EVRDTQG G GW GRL *Y G+RA * G GV IPCRLHR G DAPW +S GG+G QGY+ +G +LTDIKE HG++QTYK + PW+ HKH G Q V Subject 5196 ELADFLRLGLDRSTLGSGSIESLPYDKCIKLLEGLRALGFSSIDNVLHVLGKGEPDRFEIYKVFRSQGVAISEALQLGLTKSFSFSPRPVSLILDDLLDRIARGASFLPVDLGAVNGELVINFERSRLSVDLYVNNKKVCSRISYSPGDPYYVQRRFSGFKGIITRAS*DKGLQCQTEHQGSGDSKQGPAPRGCLRDRID*EGVSEENKEVRDTQGIGCKGWSGRLRS*YLGFRA**CGRRGVSTIPCRLHRGGVDAPWQKSGRQGGSGGQGYEAKGAQLTDIKELHGFIQTYKRLRRFPWLFHKHHGPAQRV 6134
Range 2: 5473 to 6135 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
415.7 bits(901) | 0.0 | 184/221(83%) | 0/221(0%) | Minus/Plus |
Query 1 YWTTC*IV*QDAHHFCRLIWVL*XXXXXXXXSVLG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 663 YWTTC*I *Q+ HHFCRLIWVL*+GS* SISSVLG*V*TC IIRKCA E* T + L+MS SQ SKGSS ALHEIKVFNVKRNTKDLE LNKALHRGD YETEL ERVFPRRT+KCVIH+ELVV+DGRVDCDLDI+D+GLD+VDEEE+PLYHVGCIVVALMPHGKNL GKVV+E++DTRLKGPSSRISRSFMD+SKPISACADFPGYFIST D LN Y Subject 5473 YWTTC*IG*QEVHHFCRLIWVL*TGS*LSISSVLG*V*TCMSIIRKCAQE*VTHRAILTMSSEGSQGSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDILDSGLDDVDEEEYPLYHVGCIVVALMPHGKNLGGKVVVEVKDTRLKGPSSRISRSFMDLSKPISACADFPGYFISTTDLLNGY 6135
Range 3: 5197 to 5415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 43/73(59%) | 0/73(0%) | Minus/Plus |
Query 721 N*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRVWQLAR 939 N L+ V WIG+ *V GL*S +I VL C*R CV V L ITCSTCWE VSR A + +RCSG RVWQ R Subject 5197 NWLTFCVWAWIGVL*VAGL*SHYLMISVLSC*RVCVRWVFLR*ITCSTCWERVSRIALKSTRCSGPRVWQSVR 5415
Range 4: 5192 to 5980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
416.7 bits(903) | 0.0 | 194/263(74%) | 0/263(0%) | Plus/Minus |
Query 156 DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV 944 D HGAS P RCNRHGI+ TP P H AL P YQ NRP HP+ P PCVSRTS S E P S S HPR A C E +PW S H*RPLSHE RVMIPL PENLRWT * SP E ILEHTFLLL YKSTLNLERSKLITSSP TAPKSTGRNDA LAIRSSKSSSIRLTGRGLKL+LFVKPS ASLIATP RNTL ISKRSGSP P+TWSTLSIE P R PS+NLIHLS G DSIDPLP V LSKPRRR S NS+ Subject 5192 DFCHGASTPPRCNRHGIVDTPLRPHHQALNPRYQDRNRPDHPLQPIPCVSRTSLFSSETPSQSILSRKHPRGAGPCLESPDPWCSV*H*RPLSHEARVMIPLNPENLRWT**GSPGE*LILEHTFLLLTYKSTLNLERSKLITSSPFTAPKSTGRNDAPLAIRSSKSSSIRLTGRGLKLKLFVKPSCRASLIATPWDRNTL*ISKRSGSPFPNTWSTLSIEEKPNARKPSNNLIHLS*GNDSIDPLPKVLLSKPRRRKSANSI 5980
Range 5: 6065 to 6133 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 12/23(52%) | 0/23(0%) | Plus/Minus |
Query 3 TD*VDPGCL*STQGSQHMHL*VW 71 T * P CL*+ QG++ L*VW Subject 6065 TR*AGPWCL*NNQGNRRKRL*VW 6133
Range 6: 5196 to 5828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.0 bits(679) | 0.0 | 149/211(71%) | 0/211(0%) | Plus/Minus |
Query 308 HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN*F 940 HFLVLLGNT S NSVS SPRCRALFR S+SLVF TLKTFIS* A DDPFE *E +DI+ + V YS AHFLII++QVYT*PRTLEID *LP +STQINRQK*C SCY I*QVVQYQTNWTRAEAK FC A*L SL +CHTL PEHL + +A+RLT SQHVEHVI R T RTQ+L*Q NT I LYRP T* PIQ T++++ F Subject 5196 HFLVLLGNTLSINSVS*TSPRCRALFRVSRSLVFRLTLKTFIS*SACDDPFEP*EPSLDIVRIAR*VTYS*AHFLIIDIQVYT*PRTLEIDN*LPVYSTQINRQK*CTSCYPI*QVVQYQTNWTRAEAKTFCQA*L*SLTDCHTLGPEHLVDFKAIRLTLSQHVEHVIYRRKTQRTQTL*QLNTLIIR**LYRPAT*STPIQAQTQKVSQF 5828
Range 7: 5925 to 6134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 58/70(83%) | 0/70(0%) | Plus/Minus |
Query 2 YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIRELGXXXXXXXXXXXXXXXRFLPWGISATTMQPTWYNG 211 Y LS S VLMK PGKSA ALIGLD SMKLLDIRELGP SLVSL+S TTLP RFLPWGI+ATTMQPTWY+G Subject 5925 YPLSRSVVLMK*PGKSAQALIGLDKSMKLLDIRELGPFSLVSLTSTTTLPPRFLPWGINATTMQPTWYSG 6134
Range 8: 5455 to 6135 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
322.7 bits(698) | 0.0 | 149/227(66%) | 0/227(0%) | Plus/Minus |
Query 1 VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLMKSA**SL*NLRISDGHTERHLQSTLF*STLSYY*CTSLHLT*NARN*LLAPRSQHPNQPAEMMRILLYDLASRPVSD*LDE 681 VP+E +RGAYE+ RE+ YRFG IHE P*YP*A L I +LHYHL +I MGHQ H DATDMV*W LL +H+I+P I DIK+ IDPTILY+Q VYHAL P K+P Q L+ IPA+Q V SL ILG+P I+DLYLMK **SL* LR GH++ S LF STLSYY* TSLHLT*NARN* LAPR QHPNQPAEMM +LL DLASRPVSD*LDE Subject 5455 VPVEQVRGAYEITREIGASAYRFG*IHEAP*YP*AGPL*PRILDLHYHLAAQIFAMGHQRHHDATDMV*WILLFVHIIKP*IQDIKIAIDPTILYNQFPVYHALPCSPRKHPLNQFCLVNIPAVQGLV*SLQILGVPFDIEDLYLMKRV**SL*TLRTFAGHSKDRPVSNLFLSTLSYY*HTSLHLT*NARN**LAPRLQHPNQPAEMMHLLLSDLASRPVSD*LDE 6135
Range 9: 5197 to 5418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 41/74(55%) | 0/74(0%) | Plus/Minus |
Query 718 KPR*LPHPVPGTP*ESRSGPAHLLPARGARYQ*KHNLKNAIPLAT*YTYQRAETL*TRYLM*TYPNLDGGTQLI 939 +P *LPHP GTP +S PAH P RGARY K N +A PL T*YTY + TL*TRYL +YP+ D +Q I Subject 5197 EPH*LPHPGTGTPCRFQSDPAHPFPTRGARYLSKKNPTHANPLTT*YTYHKVMTL*TRYLKYSYPSPDAESQPI 5418
Range 10: 5378 to 6133 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.0 bits(716) | 0.0 | 167/252(66%) | 0/252(0%) | Minus/Plus |
Query 3 QGVPGTGCGN*RGLPARLNKKP*LQPXXXXSDTGRLARSYSKMRIISAG*FGCCDRGASNQFRAF*VKCRLVH***ESVL*NKVLCR*RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGMRMRPS*MNGYFQGGPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW*WSSGIQDSRDRAHGYQGVSWICPNL*VHVLTSLGTS*APRINSIG 758 QGVP GCGN G ARL+KK *LQPSSS*SDTGRLARS SK IISAG*FGCC RGAS QFRAF*VKCRLV **ESVL NK+L +CP+++LR QRDHH FMR*RS M G PRI RL*T+ C AGM R +*+ G F+G SA*YT +W RMVGSI LISWIQG M W +RS HYTMSVAS W *CPM +I RW*W S I+ R AHGYQG SWI PNL* SL S*APR S G Subject 5378 QGVPVPGCGNQ*GSTARLDKKF*LQPSSS*SDTGRLARSDSKRCIISAG*FGCCKRGASYQFRAF*VKCRLVCQ**ESVLKNKLLTGRSLLCPAKVLRVQRDHHTRFMR*RSSMSNGTPRIWRL*TRPCTAGMFTRQN*LRGCFRGEQGSA*YTGNWL*RMVGSIAILISWIQGLMMWTKRSIHYTMSVASWWR*CPMAKIWAARW*WRSRIRG*RGPAHGYQGASWIYPNL*ALAPISLVIS*APRTCSTG 6133
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 11
Range 1: 5207 to 5905 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
409.3 bits(887) | 0.0 | 190/233(82%) | 0/233(0%) | Minus/Plus |
Query 245 TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHG 943 TEL++FLR GLDRSTLG+GSIESLP DRCIRLLEGLR+LGY+SIDNVLHVLGGGEPDRF+IL+VFRAQGVA+SEAY+LGLTKSLSFSPRPVSLILDDLLDRIAR ASFLPVDLGAV GELV+NFERSRLSVDLY+NNKKVCSRIKYSAGD +YV +RFSGFKGI+TRSS*DKGL + E+QGF SEQ A RGC+ DRV+ G+ KED+EV DTQ A G GW GRL*P*YHG Subject 5207 TELLDFLRFGLDRSTLGSGSIESLPLDRCIRLLEGLRNLGYSSIDNVLHVLGGGEPDRFQILRVFRAQGVAVSEAYELGLTKSLSFSPRPVSLILDDLLDRIARGASFLPVDLGAVNGELVVNFERSRLSVDLYVNNKKVCSRIKYSAGDPKYVQQRFSGFKGIVTRSS*DKGLQRKAEHQGFGDSEQGPAPRGCLRDRVDRKGVPKEDKEVCDTQRASGKGWQGRL*P*YHG 5905
Range 2: 5936 to 6148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.3 bits(278) | 0.0 | 49/71(69%) | 0/71(0%) | Minus/Plus |
Query 2 VPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV 214 V IPCRL+R G DAPW*E +W G+G QG+KT+ +LTDIKE HGYVQTYKCMC* PW+LHKH G TQ V Subject 5936 VSTIPCRLYRGGADAPW*EPKWQSGSGGQGHKTERAQLTDIKELHGYVQTYKCMC*FPWLLHKHRGLTQWV 6148
Range 3: 5206 to 6000 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
442.3 bits(959) | 0.0 | 200/265(75%) | 0/265(0%) | Plus/Minus |
Query 150 H*DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV 944 H SYHGAS P R +RHGI+ T PHP +P*YQGHNRP HP+P A CVS TS SSL P STRS HPR A CSE NPW S+ *RPLSHEERV IPL PENL WTY SPAEYFILEHTFLLL Y+STLNLERSKL TSSP TAPKSTGRNDA LA+RSSKSSSIRLTGRGLKLRLFVKPS ASL ATP ARNTLRI RSGSPPP+TWSTLSI+ *PK R PS+NLIHLSKG DSIDPLPNV LS+P+RR S+NSV Subject 5206 HLGSYHGASAPPRYSRHGIVDTHPHPHSQVHHP*YQGHNRPCHPLPLALCVSHTSLSSLGTPFLSTRSRKHPRGAGPCSESPNPWCSALR*RPLSHEERVTIPLNPENLCWTYLGSPAEYFILEHTFLLLTYRSTLNLERSKLTTSSPFTAPKSTGRNDAPLAMRSSKSSSIRLTGRGLKLRLFVKPSSYASLTATPWARNTLRI*NRSGSPPPNTWSTLSIDE*PKLRKPSNNLIHLSKGNDSIDPLPNVLLSRPKRRKSSNSV 6000
Range 4: 6073 to 6147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 20/25(80%) | 0/25(0%) | Plus/Minus |
Query 3 TD*VDPGCL*STQGSQHMHL*VWTY 77 T *V P CL*S QG+QHMHL*VWTY Subject 6073 TH*VSPRCL*SNQGNQHMHL*VWTY 6147
Range 5: 5487 to 6149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.9 bits(873) | 0.0 | 182/221(82%) | 0/221(0%) | Minus/Plus |
Query 1 YWTTC*IV*QDAHHFCRLIWVL*XXXXXXXXSVLG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 663 YW TC*I *Q+ HHF RL WVL*+GS* SISSVLG*V* C LIIR+CA E*ST Q SMS SQ SKGSS ALHEIKVFNVKRNTKDLE LNKALHRGD YETEL ERVFPRRT+KCVIH+ELVV+DGRVDCDLDIMD GL+ VDE+E+PLYHVGCIVVALMPHGKNLSGKVV+E++DTRLK PSSRISRSFMDMSKPISACADFPGYFIST D LN Y Subject 5487 YWMTC*IA*QEVHHFYRLTWVL*TGS*LSISSVLG*V*ICMLIIRRCAQE*STQQGIPSMSNRGSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIERVFPRRTRKCVIHRELVVKDGRVDCDLDIMDDGLENVDEDEYPLYHVGCIVVALMPHGKNLSGKVVVEVKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGY 6149
Range 6: 5208 to 5429 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 44/74(59%) | 0/74(0%) | Minus/Plus |
Query 721 PN*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRVWQLAR 942 PN L SS V IG+H*V GL*S P IGVLGC*+ CV+* LITCSTC E V++ R CSG R WQL R Subject 5208 PNCLISSASVLIGVH*VAGL*SHYP*IGVLGC*KVCVI*ATRRLITCSTC*EGVNQIGFRSLECSGPRGWQLVR 5429
Range 7: 5469 to 6149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
368.6 bits(798) | 0.0 | 161/227(71%) | 0/227(0%) | Plus/Minus |
Query 1 VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLMKSA**SL*NLRISDGHTERHLQSTLF*STLSYY*CTSLHLT*NARN*LLAPRSQHPNQPAEMMRILLYDLASRPVSD*LDE 681 VPIE +RGAYEV RE+STCTYRFGHIHE P*YP*A +SC+ +LHYH T +LTMGHQ H D DMV*W L+LIH+++ IHDIKVTIDP ILYH L VYH L PPW++PF QLGL+ IPA+Q VQSL ILG+PL+++DLYLMKS * SL* LR S GHT L STLF ST SYY* T LHLT*NARN* LAPRSQHP+QP EMM +LL DLAS PVSD*LDE Subject 5469 VPIE*VRGAYEVTREISTCTYRFGHIHEAP*YP*AGLFQSCVLDLHYHFAT*VLTMGHQRHHDTADMV*WILILIHILKSIIHDIKVTIDPAILYH*LSVYHTLPCPPWEHPFYQLGLVNIPAVQGLVQSLQILGVPLYVEDLYLMKSV*RSL*ILRTSVGHTWDPLLSTLFLSTPSYY*HTDLHLT*NARN*QLAPRSQHPSQPVEMMHLLLCDLASHPVSD*LDE 6149
Range 8: 5208 to 5429 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 41/74(55%) | 0/74(0%) | Plus/Minus |
Query 721 PR*LPHPVPGTP*ESRSGPAHLLPARGARYQ*KHNLKNAIPLAT*YTYQRAETL*TRYLM*TYPNLDGGTQLIR 942 P *LP P PGT * S + H L RGARYQ +L A L T*YTY R TL*TRYLM +Y + GG Q IR Subject 5208 PH*LPPPGPGTL*GSETDLVHPLLTRGARYQSTSSLNYANLLTT*YTYLRVMTL*TRYLMYSYQDRSGGNQAIR 5429
Range 9: 5207 to 5842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.4 bits(719) | 0.0 | 151/212(71%) | 0/212(0%) | Plus/Minus |
Query 308 HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN*FG 943 HFLVLLGNT S NSVS SPRCRALFR SKSLVF FTLKTFIS*RA DDPFE+*E +DIL + C VLYS AH LIIN+Q+YT*PRTLEID *LP HSTQ+NR K*C SCY I*QV+QYQTNWTRAE K F *A* V L NCH L PEH ++L+ + T S HVEHVINR + * TQ+ *QPNTPI G LYRP T*C PI+T EE+ FG Subject 5207 HFLVLLGNTLSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*EPLLDILGIPC*VLYS*AHLLIINIQIYT*PRTLEIDN*LPVHSTQVNR*K*CTSCYAI*QVIQYQTNWTRAETKTFR*A*FVRLTNCHPLGPEHSKDLKPIWFTPS*HVEHVINRRVA*ITQTF*QPNTPI*G**LYRPAT*CTPIKTEAEEIKQFG 5842
Range 10: 5939 to 6148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 60/70(86%) | 0/70(0%) | Plus/Minus |
Query 2 YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIRELGXXXXXXXXXXXXXXXRFLPWGISATTMQPTWYNG 211 Y LS S VLMK PGKSAHALIGLDISMKLLDIRELG SLVSL+S TTLPLRFLPWGISATT+QPTWY+G Subject 5939 YPLSKSAVLMK*PGKSAHALIGLDISMKLLDIRELGSFSLVSLTSTTTLPLRFLPWGISATTIQPTWYSG 6148
Range 11: 5386 to 6147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
342.0 bits(740) | 0.0 | 170/254(67%) | 0/254(0%) | Minus/Plus |
Query 3 DSQGVPGTGCGN*RGLPARLNKKP*LQPXXXXSDTGRLARSYSKMRIISAG*FGCCDRGASNQFRAF*VKCRLVH***ESVL*NKVLCR*RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGMRMRPS*MNGYFQGGPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW*WSSGIQDSRDRAHGYQGVSWICPNL*VHVLTSLGTS*APRINSIG 764 D VPG G G+* G+ RLN+K * QPSSS*SDTG LARS+SK IIS G* GCC+RGAS QFRAF*VKCR V ***E VL NKVL R VCP+E+LR QRD H LFMR*RS * G PRI RL*T+ C AGM RPS* G QGG S *YT S W RM GSIVTLISW+ WMR S HYTMS S W *CPMVR V +W*W S QD + AHGYQG SWICPNL*VHVL SL TS*APR S+G Subject 5386 DP*SVPGPGGGS**GVRTRLNEKS*FQPSSS*SDTG*LARSHSKRCIISTG*LGCCERGASCQFRAF*VKCRSVC***EGVLKNKVLSRGSQVCPTEVLRIQRDRHTLFMR*RSST*SGTPRIWRL*TRPCTAGMFTRPS**KGCSQGGQGSV*YTES*W*RMAGSIVTLISWMMDLRMWMRMSIHYTMSAVSWWR*CPMVRT*VAKW*WRSRTQD*KSPAHGYQGASWICPNL*VHVLISLVTS*APRTYSMG 6147
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 11
Range 1: 5207 to 5905 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
410.2 bits(889) | 0.0 | 192/233(82%) | 0/233(0%) | Minus/Plus |
Query 245 TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHG 943 TELV+ LR GLDRSTLG+GSIESLP D+CI LLEGLRSLGY+SIDNVLHVLGGGEPDRF+IL+VFR+QGVA+SEAY+LGLTKSLSFSPRPVSLIL+DLLDRIAR ASFLPVDLGAV GELV+NFERSRLSVDLY+NNKKVCSRIKYSAGD +YV +RFSGFKGIITRSS*DKGL*CE E+QGF SEQ A RGC+*DRV+ G+ K+D+EV +TQ AGG GW*GRL*P*YHG Subject 5207 TELVDLLRFGLDRSTLGSGSIESLPLDKCIGLLEGLRSLGYSSIDNVLHVLGGGEPDRFQILRVFRSQGVAVSEAYELGLTKSLSFSPRPVSLILEDLLDRIARGASFLPVDLGAVNGELVVNFERSRLSVDLYVNNKKVCSRIKYSAGDPKYVQQRFSGFKGIITRSS*DKGL*CEAEHQGFGDSEQGPAPRGCL*DRVDRKGVPKKDKEVCNTQRAGGEGW*GRL*P*YHG 5905
Range 2: 5936 to 6148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 48/71(68%) | 0/71(0%) | Minus/Plus |
Query 2 VPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV 214 V IPC L+R GTDAPW ES W GG GAQG+K + LTDIKE HGYVQTYKC+C* PW+LHKH TQ V Subject 5936 VSTIPCGLYRGGTDAPWQESDWQGGCGAQGHKAKRA*LTDIKELHGYVQTYKCLC*FPWLLHKHRRLTQWV 6148
Range 3: 5206 to 5994 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
452.9 bits(982) | 0.0 | 203/263(77%) | 0/263(0%) | Plus/Minus |
Query 156 DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV 944 DS HGASVP R N HGI+ TPPH YP*YQGHNRPYHP PPA CV TS S L P STRSH HPR A CSE NPW S+SH*RPLSHEERVMIPL PENL WTY SPAEYFILEHTFLLL Y+STLNLERSKL TSSP TAPKSTGRNDA LA+RSSKSSSIRLTGRGLKLRLFVKPS ASL ATP RNTLRI RSGSPPP+TWSTLSI+ *PK R PS+N IHLSKG DS+DPLPNV LS+P+RR STNSV Subject 5206 DSCHGASVPPRYNPHGIVDTPPHSHPQVHYP*YQGHNRPYHPSPPALCVLHTSLSFLGTPFLSTRSHKHPRGAGPCSESPNPWCSASH*RPLSHEERVMIPLNPENLCWTYLGSPAEYFILEHTFLLLTYRSTLNLERSKLTTSSPFTAPKSTGRNDAPLAMRSSKSSSIRLTGRGLKLRLFVKPSSYASLTATPWLRNTLRIWNRSGSPPPNTWSTLSIDE*PKLRKPSNNPIHLSKGNDSMDPLPNVLLSRPKRRRSTNSV 5994
Range 4: 6073 to 6147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 18/25(72%) | 0/25(0%) | Plus/Minus |
Query 3 TD*VDPGCL*STQGSQHMHL*VWTY 77 T *V CL*S QG+QH HL*VWTY Subject 6073 TH*VSLRCL*SNQGNQHRHL*VWTY 6147
Range 5: 5487 to 6149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
407.5 bits(883) | 0.0 | 184/221(83%) | 0/221(0%) | Minus/Plus |
Query 1 YWTTC*IV*QDAHHFCRLIWVL*XXXXXXXXSVLG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 663 YW TC*I *Q+ HHF RLIWVL*+GS* SISSVLG*V* C LIIR+CA E*ST Q SMS DSQ SKGSS ALHEIKVFNVKRNTKDLE LNKALHRGD YETEL E+VFPRRTKKCVIH+ELVV+DGRVDCDLDIMD GL +V+EEE+PLYHVGCIVVALMPHGKNL+GKVV+EL+DTRLK PSSRISRSFMDMSKPISACADFPGYFIST D LN Y Subject 5487 YWRTC*IA*QEVHHFYRLIWVL*TGS*LSISSVLG*V*ICMLIIRRCAQE*STQQGIPSMSNRDSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYETELIEKVFPRRTKKCVIHRELVVKDGRVDCDLDIMDNGLGDVNEEEYPLYHVGCIVVALMPHGKNLTGKVVVELKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGY 6149
Range 6: 5208 to 5429 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 39/74(53%) | 0/74(0%) | Minus/Plus |
Query 721 PN*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRVWQLAR 942 PN L S IG+ *V G *S I VLGC*+ CV+ V L TCSTCWE V++ SR CSG R WQL R Subject 5208 PNWLISFASALIGVR*VAGP*SHYL*ISVLGC*KVCVVWVTRQLTTCSTCWEGVNQIGSRSLGCSGARGWQLVR 5429
Range 7: 5207 to 5842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
324.1 bits(701) | 0.0 | 149/212(70%) | 0/212(0%) | Plus/Minus |
Query 308 HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN*FG 943 HF VLLGNT S NSVS SPRCRALFR SKSLVF FTLKTFIS*RA DDPFE+*ES +DIL + C VLYS AH LIIN+Q+YT*PRTLEID *LP HSTQINR K*C SCY I*QV+QYQTNWTRAE K FC*A*LV L NCH L PEH ++LE + T SQHVEHV+N +T TQ+ *QPNT I LY P T* PI+ +E+N FG Subject 5207 HFFVLLGNTFSINSVS*TSPRCRALFRVSKSLVFRFTLKTFIS*RACDDPFES*ESLLDILGIPC*VLYS*AHLLIINIQIYT*PRTLEIDN*LPVHSTQINR*K*CTSCYAI*QVLQYQTNWTRAETKTFC*A*LVRLTNCHPLAPEHPKDLEPIWFTPSQHVEHVVN*RVTQTTQTF*QPNTLI*R**LYGPAT*RTPIKAEAKEINQFG 5842
Range 8: 5939 to 6148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 59/70(84%) | 0/70(0%) | Plus/Minus |
Query 2 YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIRELGXXXXXXXXXXXXXXXRFLPWGISATTMQPTWYNG 211 Y LS S VLMK PGKSA ALIGLDISMKLLDIRELG SLVSLSS TTLP+RFLPWGISATT+QPTWY+G Subject 5939 YPLSKSAVLMK*PGKSAQALIGLDISMKLLDIRELGSFSLVSLSSTTTLPVRFLPWGISATTIQPTWYSG 6148
Range 9: 5469 to 6149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
366.7 bits(794) | 0.0 | 167/227(74%) | 0/227(0%) | Plus/Minus |
Query 1 VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLMKSA**SL*NLRISDGHTERHLQSTLF*STLSYY*CTSLHLT*NARN*LLAPRSQHPNQPAEMMRILLYDLASRPVSD*LDE 681 VPIE + GAYEV RE+ST TYRFGHIHE P*YP*AR C+ ELH HL ++IL MGHQCH D T MV*W LLLIH+ + IHDIKVTIDPTIL+HQL VY+ LL P W++ F QLGLI IPA+Q VQSL ILG+PLHIKDLYLMKS **SL* LRIS GHT L STLF ST SYY* T LHLT*NARN* LAPRSQHPNQP EMM +LL DLAS PVSD*LDE Subject 5469 VPIE*VCGAYEVTREISTGTYRFGHIHEAP*YP*ARLF*PCVLELHNHLASQILAMGHQCHHDTTHMV*WILLLIHIPKSIIHDIKVTIDPTILHHQLSVYYTLLCPSWEHLFYQLGLINIPAVQGLVQSLQILGVPLHIKDLYLMKSV**SL*ILRISVGHTWDPLLSTLFLSTPSYY*HTDLHLT*NARN*QLAPRSQHPNQPVEMMHLLLCDLASPPVSD*LDE 6149
Range 10: 5208 to 5429 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 36/74(49%) | 0/74(0%) | Plus/Minus |
Query 721 PR*LPHPVPGTP*ESRSGPAHLLPARGARYQ*KHNLKNAIPLAT*YTYQRAETL*TRYLM*TYPNLDGGTQLIR 942 P *LP P GTP* S + H LP RGAR Q N A L T YTY + TL TRYL +Y G Q IR Subject 5208 PH*LPPPGSGTP*GSGTDLVHPLPTRGARCQLTSNPNYANLLTTQYTYLKVMTLWTRYLTYSYQGRSEGDQPIR 5429
Range 11: 5386 to 6147 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
354.8 bits(768) | 0.0 | 178/254(70%) | 0/254(0%) | Minus/Plus |
Query 3 DSQGVPGTGCGN*RGLPARLNKKP*LQPXXXXSDTGRLARSYSKMRIISAG*FGCCDRGASNQFRAF*VKCRLVH***ESVL*NKVLCR*RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGMRMRPS*MNGYFQGGPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW*WSSGIQDSRDRAHGYQGVSWICPNL*VHVLTSLGTS*APRINSIG 764 D GVP G G+* G+ ARLNKK * QPSSS*SDTG LARS+SK IIS G*FGCC+RGAS QFRAF*VKCR V ***E VL NKVL R VCP+EILR QRDHH LFMR*RSLM* G PRI RL*T+ C AGM MRPS* Q G RS *YT SWW RMVGSIVTLISWI MRRS HYTM V S WH*CPM RI + RW WSS Q + AHGYQG SWICPNL*V VL SL TS*AP+ S+G Subject 5386 DP*GVPEPGGGS**GVRARLNKKS*FQPSSS*SDTGGLARSHSKRCIISTG*FGCCERGASCQFRAF*VKCRSVC***EGVLKNKVLSRGSQVCPTEILRIQRDHHTLFMR*RSLM*SGTPRIWRL*TRPCTAGMFMRPS**KRCSQEGQRSV*YTESWW*RMVGSIVTLISWIMDLGM*MRRSIHYTMWVVSWWH*CPMARI*LARWLWSSRTQG*KSLAHGYQGASWICPNL*VPVLISLVTS*APQTYSMG 6147
Grapevine virus A isolate P163 M5, complete genome
Sequence ID: DQ855082.2 Length: 7471 Number of Matches: 16
Range 1: 5696 to 6259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.0 bits(692) | 0.0 | 135/188(72%) | 0/188(0%) | Minus/Plus |
Query 1 LG*V*TCTLIIRKCALE*STLQVTLSMSIGDSQVSKGSSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 564 LG* * T I R+CA * VT MS DSQ ++GS L EIKVFNVKR+TKDLE+LNK+LHRGD Y+TEL E+VFPRRTKKCV+H+EL+V+DGRVDCDLD+MD+GLD+VDE+EFPLYHVGCIVVALMPHGKNL GKV +E+ DTRLK ++RISRS MD+SKP+SACADFPGYFIST D LN Y Subject 5696 LG*A*IYTSITRRCAQG*VRWWVTAVMSSVDSQGTQGSRSDLQEIKVFNVKRHTKDLESLNKSLHRGDVYDTELIEKVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVALMPHGKNLQGKVAVEVVDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTTDLLNGY 6259
Range 2: 5321 to 5524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 25/68(37%) | 0/68(0%) | Minus/Plus |
Query 736 N*LSSSV*VWIGLH*VTGL*SLCPLIGVLGC*RDCVL*VMLLLITCSTCWEEVSRTASRFSRCSGHRV 939 +*L+S V V + + *+ GL*S CP + V C* +* +L+ I W V RT + SG V Subject 5321 S*LNS*VRVAVVVI*IEGL*SPCPTLSVCVC*LI*RV*GILV*IAFFIFWVVVVRTDLKSFESSGGTV 5524
Range 3: 5535 to 5606 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 13/24(54%) | 0/24(0%) | Minus/Plus |
Query 654 RGLPARLNKKP*LQPXXXXSDTGR 725 RG AR KK LQP DTGR Subject 5535 RGFTARRQKKFVLQPKDGDRDTGR 5606
Range 4: 5317 to 6024 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 125/236(53%) | 0/236(0%) | Minus/Plus |
Query 236 TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRSS*DKGL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQXXXXXXXXGRL*P*YHGYRA 943 TELVEFL L GS+ESL + C+RLL L+ LGY SID++L++LGGG DRFEI ++FR G+ I EA QLG+ KSL +SPR V ILDDLL R+ R ++FLP DLGAV GEL+I F SRLSVDLY+NNKKVC+R+ GD+ YV RFSG+ GI RS+ + GL C+E Y+GF SEQ A GC+ R G+ +DQEVR Q G L*P +G R+ Subject 5317 TELVEFLGQSRGSCNLNRGSLESLSYVECLRLLTDLKGLGYPSIDSILYILGGGSADRFEIFRIFRRHGIGIGEALQLGVRKSLCYSPRTVIEILDDLLGRLGRGSAFLPCDLGAVKGELLITFRPSRLSVDLYVNNKKVCTRVSQVVGDSSYVLSRFSGYPGIALRSTGN*GLQCQEAYKGFGESEQEPAQGGCLRHRTHREGVPSKDQEVRCAQRTHRQGRSRGL*PGSNGLRS 6024
Range 5: 6046 to 6237 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 25/64(39%) | 0/64(0%) | Minus/Plus |
Query 23 VPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKH 214 VP +P LH R +A W ES GG + G+ ++ D+K+ HG +QT +C+ PW+LH+H Subject 6046 VPFVPRWLHSRSVNATWQESAREGGG*SGGHSSEEWSGPDLKKSHGLIQTSECLRRFPWILHQH 6237
Range 6: 5316 to 6104 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 112/263(43%) | 0/263(0%) | Plus/Minus |
Query 156 DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RPLSHEERVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV 944 DS H A R C++ G GT PH P GHN P C RTSWS P HP A CS+ NP Y+S H*RP + IP PENL T SP L HTFLLL Y+STLNL+ K+I++SP+TAP+S G+N L S+SSSI +T GL +LF+ PS AS I PC R +IS S PPP LSI PK + H + +DS DPL + L + RNSTNSV Subject 5316 DSCHVALTLRLCSQRGTKGTHPHQRRLDRSPLDPGHNPRDRP*R*VLCAQRTSWSFEGTPSL*VLCRKHPPCAGSCSDSPNPLYAS*H*RP*FPVDLSAIPGYPENLLRT*LLSPTT*LTLVHTFLLLTYRSTLNLDGRKVISNSPLTAPRSHGKNALPLPNLPSRSSSISITVLGL*HKLFLTPSCKASPIPIPCLRKIRKISNLSALPPPRI*RMLSILGYPKPFKSVNRRRHST*DKDSKDPLFKLQLPRL*PRNSTNSV 6104
Range 7: 6160 to 6258 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 25/33(76%) | 0/33(0%) | Plus/Minus |
Query 2 YRLS*SGVLMKYPGKSAHALIGLDISMKLLDIR 100 Y LS S VLMKYPGKSA AL GLD SM+LL+IR Subject 6160 YPLSKSVVLMKYPGKSAQALRGLDKSMRLLEIR 6258
Range 8: 5638 to 5952 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 56/105(53%) | 0/105(0%) | Plus/Minus |
Query 308 HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS*RARDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK 622 HFLVL GNT S +SVS SP CR LFR SKS V L TLKT IS R+ DP+ *ES DI +VT + + AH L+I+V +Y *PR E *LP I RQ+ Subject 5638 HFLVLRGNTFSMSSVS*TSPLCRLLFRLSKSFVCLLTLKTLISCRSERDPWVP*ESTEDITAVTHHLTHPCAHLLVIDV*IYA*PRWTESYQ*LPLDCP*ITRQE 5952
Range 9: 5323 to 5607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 35/95(37%) | 0/95(0%) | Plus/Minus |
Query 653 VVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT*CRPIQT*TEELN* 937 +VQY + A A+ F A*L SL++ T+ PE ++ ++VR T++Q++++ I I * Q *Q T GQ L RP T T E N* Subject 5323 IVQYLDHRPWAVAQTFSDA*L*SLSDPDTVPPEDSKDFKSVRTTTTQNIKNAIYTRIP*TLQIS*QTQTLNVGQGL*RPSIQITTTATLT*EFN* 5607
Range 10: 6046 to 6105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 17/20(85%) | 0/20(0%) | Plus/Minus |
Query 155 RFLPWGISATTMQPTWYNGN 214 RFLP GI+ATTMQPTWY GN Subject 6046 RFLPCGINATTMQPTWYKGN 6105
Range 11: 5831 to 6259 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 58/143(41%) | 0/143(0%) | Plus/Minus |
Query 1 VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDL 429 VPIE + A EV RE+ T RFG +HET * P +L++ + + HL +IL M H +D A ++V EL+LI+++ +H I+VTI T+L + V++ALLGP ++ + ++ IP +Q+ VQ+L IL +PL I+DL Subject 5831 VPIEQVCSADEVSREICASTQRFG*VHETS*DPGRSTLQTSVHHFNRHLPLQILAMWH*RYDYAANVVQRELILINVV*TGVH*IQVTIHATVLDDEFSVHNALLGPSREHLLYEFCVVNIPPVQALVQTLQILCMPLDIEDL 6259
Range 12: 5197 to 5307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 14/37(38%) | 0/37(0%) | Plus/Minus |
Query 834 RNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV 944 R+P S H + +DS D L + L P ++STN V Subject 5197 RHPVSKRRHST*DKDSKDSLFKLQLPLP*PKSSTNPV 5307
Range 13: 5763 to 5900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 22/46(48%) | 0/46(0%) | Minus/Plus |
Query 360 *RSVCPSEILRFQRDHHALFMR*RSLM*RGIPRI*RL*TKLCIAGM 497 *+ +CP ILR RD ++ + RS M RGI RI R+*T+ C GM Subject 5763 *QQLCPQ*ILRVPRDRAQIYRKLRSSMSRGIQRIWRV*TRACTGGM 5900
Range 14: 5940 to 6119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 27/60(45%) | 0/60(0%) | Minus/Plus |
Query 141 GPRSA*YTRSWWYRMVGSIVTLISWIQGWMRWMRRSSHYTMSVASSWH*CPMVRISVVRW 320 GPRSA T + R V IVT I W MR SS T A S *C M RI RW Subject 5940 GPRSALCTENSSSRTVAWIVTWI*WTPV*TTLMRMSSLCTTLAA*S*R*CHMARICKGRW 6119
Grapevine virus A isolate I327 5, complete genome
Sequence ID: KC962564.1 Length: 7349 Number of Matches: 11
Range 1: 5685 to 6137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.0 bits(631) | 0.0 | 117/151(77%) | 0/151(0%) | Minus/Plus |
Query 1 SSRALHEIKVFNVKRNTKDLEALNKALHRGDAYETELNERVFPRRTKKCVIHKELVVQDGRVDCDLDIMDTGLDEVDEEEFPLYHVGCIVVALMPHGKNLSGKVVMELRDTRLKGPSSRISRSFMDMSKPISACADFPGYFISTPDQLNRY 453 +S + +IKVF+VKRNT+DLE+LNK+LHRGD Y+TEL E+VFPRRTKKCVIH+EL+V+DGRVDCDLDIMD GLD++DE EFPLYHVGCIVVALMPHGKNL GKV +E+ DTRLK SSRISR+ MDMSKP+SACADFPGYFIST D LN Y Subject 5685 ASSFVQDIKVFSVKRNTRDLESLNKSLHRGDVYDTELIEKVFPRRTKKCVIHRELIVKDGRVDCDLDIMDGGLDDIDEVEFPLYHVGCIVVALMPHGKNLQGKVAVEVLDTRLKDGSSRISRTLMDMSKPLSACADFPGYFISTSDLLNGY 6137
Range 2: 5198 to 5701 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
209.6 bits(451) | 0.0 | 96/168(57%) | 0/168(0%) | Minus/Plus |
Query 440 TELVEFLRLGLDRSTLGNGSIESLPFDRCIRLLEGLRSLGYASIDNVLHVLGGGEPDRFEILKVFRAQGVAISEAYQLGLTKSLSFSPRPVSLIXXXXXDRIARCASFLPVDLGAVIGELVINFERSRLSVDLYINNKKVCSRIKYSAGDAQYVHRRFSGFKGIITRS 943 TEL EFL D +L GS+ESL + +C++LL L+SLGY SID++L++LGGGE +RFEI ++FR G+ I EA QLG+ K LS SPR ILDDLL R+ R +FLP DLGAV GELV+ F SRLSVDLY+NNKKV +R + GD YV RRF+G+KG+I R+ Subject 5198 TELSEFLVHSSDSYSLSEGSLESLSYVQCVQLLSDLKSLGYQSIDSILYILGGGEAERFEIYRIFRRHGIGIGEALQLGVRKCLSNSPRSTQAILDDLLSRLGRSNAFLPSDLGAVKGELVVTFHSSRLSVDLYVNNKKVVTRSIQAEGDINYVARRFAGYKGLILRA 5701
Range 3: 5700 to 6137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 58/146(40%) | 0/146(0%) | Plus/Minus |
Query 1 VPIELIRGAYEVPREVSTCTYRFGHIHETP*YP*ARSLESCIPELHYHLTTEILTMGHQCHDDATDMV*WELLLIHLIQPCIHDIKVTIDPTILYHQLLVYHALLGPPWKYPFIQLGLIRIPAMQSFVQSL*ILGIPLHIKDLYLM 438 VPI+ + GA E+PRE+ T T HIH P YP L+ + +L HL EIL M HQCH +A +V EL L++++Q +HD+++ + TIL ++L V HALL P + F + ++ + ++Q+ V++L I GIPL +DL ++ Subject 5700 VPIQ*VAGADEIPREIGTGTQWL*HIH*CPGYPG*SILQPGV*DLDGHLALEILAMWHQCHHNAPYVVERELHLVYVVQAPVHDVQIAVHATILDYELPVDHALLCPSGEDLFYEFRVVHVTSVQALVEALEIPGIPLDAEDLNVL 6137
Range 4: 5197 to 5697 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 76/167(46%) | 0/167(0%) | Plus/Minus |
Query 444 RVMIPLKPENLRWTY*ASPAEYFILEHTFLLLMYKSTLNLERSKLITSSPITAPKSTGRNDAHLAIRSSKSSSIRLTGRGLKLRLFVKPSW*ASLIATPCARNTLRISKRSGSPPPSTWSTLSIEA*PKERNPSSNLIHLSKGRDSIDPLPNVDLSKPRRRNSTNSV 944 R M PL P NL T SP+ L TFLLL +STLNL+ + TSSP+TAP+S GR L ++SSSI GL L+ F+ PS AS I PC R IS RS SPPP +S LSI *P+ +N H + DS DP + LS RNS NSV Subject 5197 RRMRPLYPANLLAT*LISPSA*IDLVTTFLLLT*RSTLNLDEWNVTTSSPLTAPRSLGRKALLLPSLDNRSSSIACVLLGLLLKHFLTPSCKASPIPIPCLRKIR*ISNRSASPPPRIYSMLSIL**PRLFKSLNNWTHCT*DNDSNDPSLKL*LSLLCTRNSLNSV 5697
Range 5: 5246 to 5695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 51/150(34%) | 0/150(0%) | Plus/Minus |
Query 446 RDDPFET*ESPMDILSVTCRVLYSRAHFLIINVQVYT*PRTLEIDY*LPDHSTQINRQK*CASCYTI*QVVQYQTNWTRAEAKAFC*A*LVSLANCHTLCPEHLENLEAVRLTSSQHVEHVINRSIT*RTQSL*QPNTPIKGQRLYRPVT 895 +D+ F E DI+ + + R H L+INV+VYT*P +E L + +QI +K A Q+V Y+ R A+ A*L SL+N ++ PE +L++ RL ++Q++ + I IT* Q +T GQ L RP T Subject 5246 KDEAFVPCEPSCDIVDIPFCLN*PRDHLLVINVKVYT*PGRMECHNQLTFNGSQITGEKGVAPPKPRQQIV*YRLCTPRTIAQTLSDA*L*SLSNPDSVPPEDSIDLKSFRLATTQNI*YAIYTLIT*TL*ITQQLDTLYIGQ*L*RPFT 5695
Range 6: 5702 to 5830 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 29/43(67%) | 0/43(0%) | Plus/Minus |
Query 308 HFLVLLGNTRSFNSVSYASPRCRALFRASKSLVFLFTLKTFIS 436 HF VLLG T S +SVSY SP CR L R S+SLVFL TLKT +S Subject 5702 HFFVLLGKTFSMSSVSYTSPLCRLLLRLSRSLVFLLTLKTLMS 5830
Range 7: 6041 to 6136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 22/32(69%) | 0/32(0%) | Plus/Minus |
Query 2 YRLS*SGVLMKYPGKSAHALIGLDISMKLLDI 97 Y S S VLMKYPGKSA AL G DIS+ +LDI Subject 6041 YPFSRSLVLMKYPGKSAQALSGFDISISVLDI 6136
Range 8: 5924 to 5983 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 16/20(80%) | 0/20(0%) | Plus/Minus |
Query 155 RFLPWGISATTMQPTWYNGN 214 RFLP GISATTM PTW GN Subject 5924 RFLPCGISATTMHPTW*RGN 5983
Range 9: 5885 to 6136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 33/84(39%) | 0/84(0%) | Minus/Plus |
Query 2 YHGYRAXXXXXXGVPIIPCRLHRRGTDAPW*ESQW*GGNGAQGYKTQGTELTDIKEFHGYVQTYKCMC*LPWVLHKHPGSTQSV 253 +HG G GGVP +P R+H GTDA W ES GG ++ +G + DI++ +GYV+ +C+C P V H+H T+ V Subject 5885 HHGRGPGRHRRGGVPSLPRRVHCGGTDATWQESPGQGGRRGPRHQVEGWIIQDIQDTNGYVKATECLCRFPGVFHQHQRPTEWV 6136
Range 10: 5711 to 5842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 19/44(43%) | 0/44(0%) | Minus/Plus |
Query 296 GL*CEEEYQGFRGSEQSSASRGCV*DRVE*TGISKEDQEVRDTQ 427 GL +EEYQG R +Q A R V G+ ++D+EVRD Q Subject 5711 GLQRQEEYQGSREPQQEPAQR*RVRHGTHRKGLPQKDKEVRDPQ 5842
Range 11: 5710 to 5982 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 38/91(42%) | 0/91(0%) | Plus/Minus |
Query 156 DSYHGASVPRRCNRHGIMGTXXXXXXXALYP*YQGHNRPYHPVPPAPCVSRTSWSSLEIPVHSTRSHTHPRDAELCSEPLNPWYSSSH*RP 428 DS H ASVP +C G GTPP P P* + HP APC SRTS S P T A C +PWYSS *RP Subject 5710 DSCHVASVPPQCTLRGREGTPPRLCRPGPRP*CPDRSPRDHP*L*APCGSRTSLSFWGRPFL*VPCRTRHLCAGSC*GSRDPWYSS*R*RP 5982
Nucleotide Sequence (334 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
240.7 | 716.2 | 32% | 5.067e-62 | 38% | DQ855083.2 | |
238.9 | 684.6 | 59% | 1.805e-61 | 40% | DQ855082.2 | |
261.3 | 970.0 | 36% | 3.145e-68 | 58% | JX559641.1 | |
258.6 | 982.8 | 31% | 2.078e-67 | 55% | DQ787959.1 | |
258.6 | 995.2 | 32% | 2.078e-67 | 57% | DQ855088.1 |
Alignments
Grapevine virus A isolate KWVMo4 1, complete genome
Sequence ID: DQ855083.2 Length: 7351 Number of Matches: 6
Range 1: 4044 to 4373 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.7 bits(519) | 0.0 | 95/110(86%) | 0/110(0%) | Plus/Plus |
Query 3 NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 NYE RRKY ACHGIG+QMFSV K +YQ ++I+SLPELERCE EFM+KRVEKSA LIEQH+GRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG Subject 4044 NYEANRRKYKACHGIGQQMFSVFKEIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 4373
Range 2: 4043 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 83/111(75%) | 0/111(0%) | Minus/Minus |
Query 2 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*F 334 GPNLHSTECAK A+V PAFASTP FSIFV VCC R I R*LLGQSGSL P CCSI ALFSTLF MNS SHLSSSG +SIS W* +TENI PIPW A YFLL S*F Subject 4043 GPNLHSTECAKHAIVCPAFASTPLFSIFVHVCCLRKIFR*LLGQSGSLLPACCSIRPALFSTLFFMNSISHLSSSGSESISFSW*ISLKTENICWPIPWHALYFLLLAS*F 4375
Range 3: 4043 to 4369 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 45/109(41%) | 0/109(0%) | Plus/Plus |
Query 2 KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI 328 KL*G++E++ +PW+ +V +G LP E R ++ T E+ +HE+ESG++R ++RTA +* RLAQQL +D P+A ++++DG+ RG CK R+++ +LC L +Q+ Subject 4043 KL*GQQEEIQSMPWDRPADVLRLQGDLPAERDRFAS*TGEVRNGVHEEESGKERGSNRTACW*E*PRLAQQLSEDFPQATDMYKDGKERGGCKSRADNSMLCALSAVQV 4369
Range 4: 4044 to 4352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 46/103(45%) | 0/103(0%) | Minus/Minus |
Query 3 VCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLII 311 V KA L CI+PSL HL LLL+E L++VAGPV +T T +LFY A HSL HE L+F +R + LVD L + +HL MA + P+ LI+ Subject 4044 VRKACYCLPCFCIHPSLFHLCTCLLLEENLQIVAGPVGVTPTSMLFY*TRALFHSLLHELHFAPLQFRKRIDLFQLVDLLEDGEHLLAYPMACFVFPPVGLIV 4352
Range 5: 4153 to 4353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 31/67(46%) | 0/67(0%) | Plus/Plus |
Query 112 NSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHT 312 N R + +S* REW++A **NS V V TGPAT R+S S++ +RW+ EG MQ+ + AL T Subject 4153 NWRGAKWSS*RREWKRARV**NSMLVGVTPTGPATI*RFSSSNRHVQRWKREGWMQKQGRQ*HALRT 4353
Range 6: 4042 to 4365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 41/108(38%) | 0/108(0%) | Minus/Minus |
Query 1 CIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRRDTFSSSPHNF 324 C S QS LH PL+ PS A G S SCWAS H AVL R PLS S* S V S GR P +T HG S PH+F Subject 4042 CTALSAQSMLLSALLLHPPLSFPSLYMSVA*GKSSDSCWASRGHSYQHAVLLDPRSFPLSSS*TPFRTSPVQEANRSLSAGRSP*RRRTSAGLSHGMLCISSCWPHSF 4365
Grapevine virus A isolate P163 M5, complete genome
Sequence ID: DQ855082.2 Length: 7471 Number of Matches: 6
Range 1: 4045 to 4374 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.9 bits(515) | 0.0 | 94/110(85%) | 0/110(0%) | Plus/Plus |
Query 3 NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 N+E RRKY ACHGIG+QMFSV K +YQ ++I+SLPELERCE EFM+KRVEKSA LIEQH+GRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG Subject 4045 NFEANRRKYRACHGIGQQMFSVFKEIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 4374
Range 2: 4044 to 4376 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 79/111(71%) | 0/111(0%) | Minus/Minus |
Query 2 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS*F 334 GPNLHSTECAK A+V PAFASTP FSIFV VCC R I R*LLGQSGSL P CCS+ ALFST F MNS SHLSSSG +SIS * +TENI PIPW A YFLL S F Subject 4044 GPNLHSTECAKHAIVCPAFASTPLFSIFVHVCCLRKIFR*LLGQSGSLLPACCSMRPALFSTRFFMNSISHLSSSGSESISFS**ISLKTENICWPIPWHALYFLLLASKF 4376
Range 3: 4051 to 4374 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 47/108(44%) | 0/108(0%) | Minus/Minus |
Query 9 AKSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPL 332 A+ A YR+C+A L+ LCI+PSL HL A LLL+E L++VAGP+ +T T +LFY+ HSL HEF L+F +R + L+D L + +HL ++A +L + L Subject 4051 AEPAQYRMCEARYRLSRLCIHPSLFHLCACLLLEEDLQIVAGPIGVTPTSMLFYEARTLFHSLLHEFHFAPLQFRKRVDLF*LIDLLEDGEHLLAYTVACSVLPSVGL 4374
Range 4: 4044 to 4376 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 44/111(40%) | 0/111(0%) | Plus/Plus |
Query 2 KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQIWP 334 KL*G++++V +P NV +G L + R+++ T E+ IHE+ SG++ RTA +* RLAQQL +D+P+A ++H+DG+ RG CKG ++ +L T T+Q+ P Subject 4044 KL*GQQKEVQSMPRYRPANVLRLQGDLSAKRDRLAS*TGEVRNGIHEEASGKECGPHRTACW*E*PRLAQQLSEDLPQATDMHKDGKERGGCKGGTDDSVLRTFGTVQVRP 4376
Range 5: 4154 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 32/74(43%) | 0/74(0%) | Plus/Plus |
Query 112 NSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTLYYADLA 333 N R + NS* EW++ *NS V V GPAT R S S++ A+RW+ EG MQR + A H Y A A Subject 4154 NWRGAKWNS*RSEWKRVRAS*NSMLVGVTPIGPATI*RSSSSNRHAQRWKREGWMQRRDRR*RASHIRYCAGSA 4375
Range 6: 4175 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 29/67(43%) | 0/67(0%) | Minus/Minus |
Query 133 GQICIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*I 333 G+ C V +V+S PLH PL+ PS C A G S SCWA+ H AVL PL+ S*I Subject 4175 GRTCTVPNVRSTLSSVPPLHPPLSFPSLCMSVA*GRSSDSCWANRGHSYQHAVL*GPHSFPLASS*I 4375
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 6
Range 1: 4040 to 4369 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 104/110(95%) | 0/110(0%) | Plus/Plus |
Query 3 NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 +YEG RRKYLACHGIGRQMFSVLK YQWRDIESLPELE+CEKEFMRKRVEKSA+LIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG Subject 4040 SYEGNRRKYLACHGIGRQMFSVLKETYQWRDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 4369
Range 2: 4042 to 4371 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 94/110(85%) | 0/110(0%) | Minus/Minus |
Query 5 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS* 334 GPNLH+TE AKQAMV*PAFASTP FSIFV VCCFR ILR*LLGQSGSLRPECCS+ ALFSTLFLMNSFSH SSSG DS+SLH * FRTENI RPIPWQARYFLL PS* Subject 4042 GPNLHNTE*AKQAMV*PAFASTPLFSIFVHVCCFRKILR*LLGQSGSLRPECCSMRAALFSTLFLMNSFSHFSSSGNDSMSLH**VSFRTENI*RPIPWQARYFLLLPS* 4371
Range 3: 4043 to 4366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 63/108(58%) | 0/108(0%) | Minus/Minus |
Query 6 KSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLI 329 +SA +R+ KASDGLT C++P LLH A LLLQE LEVVA PVW+TST*+L + C F +SLSHE FLT LEFWQ FY+PPL+ L*N +HL P S+A E+ + + Subject 4043 ESAQHRMSKASDGLTCFCVHPPLLHFCARLLLQEDLEVVARPVWVTST*MLLDEGCTFFYSLSHELFLTFLEFWQ*FYVPPLIGLL*NGEHLTPYSVASEVFPSVTFV 4366
Range 4: 4054 to 4365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 63/104(61%) | 0/104(0%) | Plus/Plus |
Query 17 EEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI 328 ++++ RLP N A +V SKG L MEG+RI ARTREM*ER+HEKES +K R A RSK* RLA+QLPQD+PEA N+H++GE G K RSNHRLLC+ +QI Subject 4054 QKEIPRLPRNRASDVLRSKGDLSMEGHRIIARTREM*ERVHEKESRKKCSPHRAAFRSK*PRLAEQLPQDLPEATNVHKNGEEGGGRKSRSNHRLLCSFGVVQI 4365
Range 5: 4068 to 4367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 60/100(60%) | 0/100(0%) | Minus/Minus |
Query 31 QICIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRR 330 +IC + QSKRWFD L P +SP C F ASG S*GSC ASL HFDL+A + F LSFS* LSHISRVLA IL PSI R PLE +T A F G+R Subject 4068 RICTTPNEQSKRWFDLLLRPPPSSPFLCTFVASGRS*GSCSASLGHFDLNAAR*GLHFFLLSFS*TLSHISRVLAMILCPSIDRSPLERRTSDALFRGKR 4367
Range 6: 4068 to 4343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 56/92(61%) | 0/92(0%) | Plus/Plus |
Query 31 SPAMELGAKCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLAL 306 S A E G +C F*R NGG *N CQNSR+VRK+S*ERE +K +S QVEV QTG ATTSR S*S+K A++WR G Q+ VKPSLAL Subject 4068 SLATE*GVRCSPF*RRPINGGT*NHCQNSRNVRKSS*ERE*KKVQPSSSSIQVEVTQTGRATTSRSS*SNKRAQKWRRGGWTQKQVKPSLAL 4343
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 6
Range 1: 4054 to 4383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.6 bits(558) | 0.0 | 102/110(93%) | 0/110(0%) | Plus/Plus |
Query 3 NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 +YEG RRKYL+CHGIGRQMFSVLK YQW+DIESLPELE+CEKEFMRKRVEKSA+LIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG Subject 4054 SYEGNRRKYLSCHGIGRQMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 4383
Range 2: 4056 to 4385 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.9 bits(395) | 0.0 | 92/110(84%) | 0/110(0%) | Minus/Minus |
Query 5 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS* 334 GPNLHSTE AKQAMV PAFASTP FSIFVQVCC R ILR*LLGQSGSL PECCSIS ALFST FL+NSFSH SSSG DSIS HW* TENIWRPIP Q RYFLLFPS* Subject 4056 GPNLHSTE*AKQAMVCPAFASTPLFSIFVQVCCLRKILR*LLGQSGSLLPECCSISAALFSTRFLINSFSHFSSSGSDSISFHW*VSLSTENIWRPIP*QLRYFLLFPS* 4385
Range 3: 4053 to 4379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 65/109(60%) | 0/109(0%) | Plus/Plus |
Query 2 KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI 328 KL* E+EKV L WNWAPNV S++ LP+EGYR++ART +M ERI+E+ ++R TDRTALR K* LAQQLPQD+P+ A+LH+DG+ R CKGR++H L C+LC +Q+ Subject 4053 KL*REQEKVP*LSWNWAPNVLSAQRDLPVEGYRVTART*KMRERIYEEAG*KERCTDRTALRKK*P*LAQQLPQDLPQTADLHKDGKERSGCKGRTDHSLFCSLCAVQV 4379
Range 4: 4057 to 4383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.4 bits(298) | 0.0 | 62/109(57%) | 0/109(0%) | Minus/Minus |
Query 6 AKSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLI 332 ++ A +RV K S GL+GLCI+ SL HL AGLL +E LEV+AGPV +TS+*VLFYQ A + L H+FFL +FWQ YI PLV +*+HLAPNSM ++LSP+P I Subject 4057 SEPAQHRVSKTSYGLSGLCIHSSLFHLCAGLLFEEDLEVIAGPVRVTSS*VLFYQCSALFNPLPHKFFLAFFKFWQ*LYILPLVSLFEH*EHLAPNSMTAKVLSPVPFI 4383
Range 5: 4052 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 62/108(57%) | 0/108(0%) | Minus/Minus |
Query 1 CIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRRDTFSSSPHNF 324 C QS Q+K W RPLH L+ PS CR A G S*G+CWAS HF LSAVLSV R + S*ILS I +VLA LYPS G+ L+TFGAQFH TFS S H+F Subject 4052 CTAQSEQNKLWSVRPLHPLLSFPSLCRSAV*GRS*GNCWASQGHFFLSAVLSVQRSFQPASS*ILSRIFQVLAVTLYPSTGKSL*ALRTFGAQFHDS*GTFSCSLHSF 4375
Range 6: 4052 to 4366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 58/105(55%) | 0/105(0%) | Plus/Plus |
Query 1 EIMRGRGESISPAMELGAKCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTL 315 E M+G GES MELGAKC Q + T+G I*+ CQN ++ RKN * ++A H**NSTQ EV TGPA TSR S +S+PA+RW+ E MQRP +P L L TL Subject 4052 EAMKGTGESTLAVMELGAKCSQCSKRLTSGRI*SHCQNLKNARKNL*GSGLKRALH**NSTQEEVTLTGPAITSRSSSNSRPAQRWKREEWMQRPDRP*LVLLTL 4366
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 6
Range 1: 4054 to 4383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.6 bits(558) | 0.0 | 102/110(93%) | 0/110(0%) | Plus/Plus |
Query 3 NYEGKRRKYLACHGIGRQMFSVLKGVYQWRDIESLPELERCEKEFMRKRVEKSASLIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 332 +YEG RRKYL+CHGIGRQMFSVLK YQW+DIESLPELE+CEKEFMRKRVEKSA+LIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG Subject 4054 SYEGNRRKYLSCHGIGRQMFSVLKETYQWKDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQTCTKMEKRGVDAKAGQTIACFAHSVLCRFG 4383
Range 2: 4056 to 4385 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 91/110(83%) | 0/110(0%) | Minus/Minus |
Query 5 GPNLHSTECAKQAMV*PAFASTPRFSIFVQVCCFRNIXXXXXXXXXXXRPECCSISDALFSTLFLMNSFSHLSSSGRDSISLHW*TPFRTENIWRPIPWQARYFLLFPS* 334 GPNLHSTE AKQAMV PAFASTP FSIFVQVCC R ILR*LLGQSGSL PECCSIS ALFST FLMNSFSH SSSG DSIS H * TENI RPIP Q RYFLLFPS* Subject 4056 GPNLHSTE*AKQAMVCPAFASTPLFSIFVQVCCLRKILR*LLGQSGSLLPECCSISAALFSTRFLMNSFSHFSSSGSDSISFH**VSLSTENI*RPIP*QLRYFLLFPS* 4385
Range 3: 4053 to 4379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 69/109(63%) | 0/109(0%) | Plus/Plus |
Query 2 KL*GEEEKVSRLPWNWAPNVFSSKGSLPMEGYRISARTREM*ERIHEKESGEKRITDRTALRSK*SRLAQQLPQDIPEAANLHEDGEARGRCKGRSNHRLLCTLCTMQI 328 KL*GE EKV L WNWA NV ++ L +EGYR++A TREM ERIHE+ ++R TDRTALR K*SRLAQQLPQD+P+A +LHE+GE RGRCKG ++H L C+L MQ+ Subject 4053 KL*GE*EKVPELSWNWASNVLCAQRDLSVEGYRVTAGTREMRERIHEETGRKERSTDRTALRKK*SRLAQQLPQDLPQATDLHENGEKRGRCKGWTDHSLFCSLRAMQV 4379
Range 4: 4057 to 4383 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 65/109(60%) | 0/109(0%) | Minus/Minus |
Query 6 AKSA*YRVCKASDGLTGLCIYPSLLHLRAGLLLQEYLEVVAGPVWITST*VLFYQ*CAFLHSLSHEFFLTSLEFWQRFYIPPLVDSL*N*KHLAPNSMAGEILSPLPLI 332 ++ A*+ V K S GL+ LCIYPS LH RAGLLL+E LEV+AGPV ITS+*VLFYQ CA + HEFFL LEF Q YI PL+ + +HL PNSM ++LSP+PLI Subject 4057 SEPA*HGVSKTSYGLSSLCIYPSFLHFRAGLLLEEDLEVIAGPVGITSS*VLFYQCCALFYPFPHEFFLAFLEFRQ*LYILPLISLFEHREHLTPNSMTTQVLSPIPLI 4383
Range 5: 4052 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 64/108(59%) | 0/108(0%) | Minus/Minus |
Query 1 CIVQSVQSKRWFDRPLHLPLASPSSCRFAASGIS*GSCWASLDHFDLSAVLSVMRFSPLSFS*ILSHISRVLAEILYPSIGRLPLELKTFGAQFHGRRDTFSSSPHNF 324 CI +S Q+K W +PLHLPL SP SCR A G S*G+CWAS DHF LSAVLSV+R S*ILS ISRV A LYPS + +TF AQFH TFS SPH+F Subject 4052 CIARSEQNKLWSVQPLHLPLFSPFSCRSVA*GRS*GNCWASRDHFFLSAVLSVLRSFLPVSS*ILSRISRVPAVTLYPSTDKSL*AQRTFDAQFHDNSGTFSYSPHSF 4375
Range 6: 4052 to 4375 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 62/108(57%) | 0/108(0%) | Plus/Plus |
Query 1 EIMRGRGESISPAMELGAKCFQF*RESTNGGI*NLCQNSRDVRKNS*EREWRKAHH**NSTQVEVIQTGPATTSRYS*SSKPARRWRSEG*MQRPVKPSLALHTLYYA 324 E MRG GES MELG KC + +G I*+ C+NSR+ RKNS* ++A H**NSTQ EVI TGPA TSR S S++PAR+WR EG*MQR +P L L T YA Subject 4052 EAMRGIGEST*VVMELGVKCSLCSKRLISGRI*SHCRNSRNARKNS*GNG*KRAQH**NSTQEEVIPTGPAITSRSSSSNRPARKWRKEG*MQRLDRP*LVLLTPCYA 4375
Nucleotide Sequence (601 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
204.8 | 1292.1 | 26% | 3.787e-101 | 42% | DQ787959.1 | |
204.8 | 1307.7 | 27% | 3.41e-100 | 44% | DQ855088.1 | |
203.0 | 1248.6 | 29% | 4.668e-100 | 40% | JX559641.1 | |
188.5 | 721.3 | 39% | 2.205e-84 | 34% | DQ855081.2 | |
184.4 | 763.3 | 50% | 2.694e-83 | 25% | AY244516.1 |
Alignments
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 13
Range 1: 3817 to 4083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.8 bits(444) | 0.0 | 82/89(92%) | 0/89(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKYL 600 P++THL LSEKLNEL PFDLKAKEDREQYT+AGRTEQIDEEGYGQWGANPM+HKALYLRHTSDDTATFMMSVKKRLRYR+YEGNRRKYL Subject 3817 PIRTHLPLSEKLNELIPFDLKAKEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYL 4083
Range 2: 3484 to 3750 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(408) | 0.0 | 81/89(91%) | 0/89(0%) | Plus/Plus |
Query 1 EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS 267 EDEDVMVAFTRSRGEIAI+VDKKLKEVLLRTSKSELLRKIL+GET+RRS+II LVKKHIPEA+++FEENRLASNVDYEERLAGDPYLKS Subject 3484 EDEDVMVAFTRSRGEIAISVDKKLKEVLLRTSKSELLRKILSGETYRRSSIIALVKKHIPEALVVFEENRLASNVDYEERLAGDPYLKS 3750
Range 3: 3486 to 3761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 73/92(79%) | 0/92(0%) | Minus/Minus |
Query 3 KDNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS 278 +DN D R*GSPA+LSS*STLLARRFSSN ASG+CFFTS +M DLL VSP RIFR+SSLLDVL++TSF+FLSTL+AISP DLVKATITSSS Subject 3486 RDNRDLR*GSPASLSS*STLLARRFSSNTTKASGICFFTSAMMLDLLYVSPLRIFRRSSLLDVLNSTSFSFLSTLMAISPRDLVKATITSSS 3761
Range 4: 3831 to 4031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 56/67(84%) | 0/67(0%) | Minus/Minus |
Query 348 TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRAR 548 TDIMKVAVSS+VCLRY ALW+IGLAPHCP PSSSICSVRPASVYCS SS AFKSNG NS SFSL+ + Subject 3831 TDIMKVAVSSDVCLRYKALWVIGLAPHCPYPSSSICSVRPASVYCSLSSFAFKSNGINSFSFSLKGK 4031
Range 5: 3838 to 4083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 38/82(46%) | 0/82(0%) | Minus/Minus |
Query 355 EILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLLTE 600 ++LSPVP I S+P +RHHE CV+ +P + L+ H V PLP+ LLV LL P +SVLL++ L L ++ QLI+LL + Subject 3838 KVLSPVPFIASIPQTFLHRHHEGCCVI*CMP*IQSLVGHRVGPPLPVPLLVYLLSAPSLSVLLSVFLCLQIKRYQLIQLLAQ 4083
Range 6: 3485 to 3781 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 50/99(51%) | 0/99(0%) | Minus/Minus |
Query 2 LLRCLRTRITVTSDRDLQPISPRNQHCLPGGFPRI*LQPPECASLRA**CLIF*TSLRSGSSVKARSWMSSVTPLSISCPH*LRSLPWI**RLPSHPRP 298 L RC R I T R L P SPRN H GGFP+ + ASLR *C IF S R SSV A SW S + PLS+ PH* RS **R P HP P Subject 3485 LPRCPRKGIIET*GRGLLPASPRNPHYSLGGFPQTQPRLQGYASLRVR*CWIFCMSRRLESSVGAHSWTSLIAPLSVFYPH*WRSPLET**RPPLHPHP 3781
Range 7: 3486 to 3758 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 45/91(49%) | 0/91(0%) | Plus/Plus |
Query 3 GRGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI 275 G GC+G LH*+ DR+ CG + ERG +D+QE A TED +RRD+ KI+H+ RKEA+ + GKPP + C LRGE G R L +V++I Subject 3486 G*GCNGGLH*VSRGDRH*CG*KTERGAIKDVQE*APTEDSKRRDIQKIQHHRTRKEAYP*SLGCV*GKPPSE*CGLRGEAGRRPLPQVSII 3758
Range 8: 3816 to 4079 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 37/88(42%) | 0/88(0%) | Plus/Plus |
Query 333 ANEDPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGLWAMGR*PNEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL*GEQEKV 596 A++D + EA *V + +G+G A+H* A+ A+ RGG+ AMG P++P G + +A+ HS+ HDV + +V KL* EQEKV Subject 3816 ADKDSLTFEREAE*VDTV*FEGKGRQRAIH*GWAH*ADRRGGVRAMGGQPDDPQGFVSKAYIR*HSNLHDVCEETFEV*KL*REQEKV 4079
Range 9: 3484 to 3693 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.5 bits(165) | 0.0 | 36/70(51%) | 0/70(0%) | Minus/Minus |
Query 1 AVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILVL 210 AVFL+++ R++LLYE D+ SS L+ +LP*+L LG P *HLFQF +H + DL SEG+H+IL+L Subject 3484 AVFLKHNQGFRDMLLYECDDAGSSVCLAA*NLP*ELTLGRP**HLFQFFIHTNGDLPSRPSEGHHYILIL 3693
Range 10: 3845 to 4078 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 35/78(45%) | 0/78(0%) | Minus/Minus |
Query 362 TFSCSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWPLSRMGPTH*AS 595 TFSCS H+F T TS*+ LC A P GS G PIA +PPR A A+ QC A P P ++ TH AS Subject 3845 TFSCSLHSFYTSNVSSQTS*RLLCHLMYALDTKPCGSSGWPPIARTPPRLSAQCAQPQCIALCLPLPSNQTVSTHSAS 4078
Range 11: 3485 to 3628 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 29/48(60%) | 0/48(0%) | Plus/Plus |
Query 2 RTRM*W*PSLDPGERSQSMWTRN*KRCY*GHPRASFYGRS*TERRLED 145 R RM*W PSL RS +W +N*KRCY*G PR S YGR * R ED Subject 3485 RMRM*WWPSLGLEGRSPLVWIKN*KRCY*GRPRVSSYGRF*AARHTED 3628
Range 12: 3845 to 4078 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 36/78(46%) | 0/78(0%) | Plus/Plus |
Query 362 RSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGTGES 595 RS MS *R R+ S+TL G S+ TRR GNG T+* R G TQ S*C ++ *G E M+GTGES Subject 3845 RS*MS*YRLI*RQRKTESNTLRLGALSR*TRRGTGNGGPTR*PTRLCI*GIHQMTQQPS*CL*RNV*GIEAMKGTGES 4078
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 13
Range 1: 3817 to 4083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.8 bits(444) | 0.0 | 82/89(92%) | 0/89(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKYL 600 P++THL LSEKLNEL PFDLKAKEDREQYT+AGRTEQIDEEGYGQWGANPM+HKALYLRHTSDDTATFMMSVKKRLRYR+YEGNRRKYL Subject 3817 PIRTHLPLSEKLNELIPFDLKAKEDREQYTEAGRTEQIDEEGYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYL 4083
Range 2: 3487 to 3750 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(401) | 0.0 | 80/88(91%) | 0/88(0%) | Plus/Plus |
Query 4 DEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS 267 DEDVMVAFTRSRGEIAI+VD+KLKEVLLRTSKSELLRKIL+GET+RRS+II LVKKHIPEA+I+FEENRLASNVDYEERLAGDPYLKS Subject 3487 DEDVMVAFTRSRGEIAISVDRKLKEVLLRTSKSELLRKILSGETYRRSSIIALVKKHIPEALIVFEENRLASNVDYEERLAGDPYLKS 3750
Range 3: 3486 to 3761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 72/92(78%) | 0/92(0%) | Minus/Minus |
Query 3 KDNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS 278 +DN D R*GSPA+LSS*STLLA+RFSS I ASGMCFFT +M DLL VSP RIFR+SSLLDVL++TSF+FLSTL+AISP DLVKATITSSS Subject 3486 RDNRDLR*GSPASLSS*STLLAKRFSSKTIKASGMCFFTRAMMLDLLYVSPLRIFRRSSLLDVLNSTSFSFLSTLMAISPRDLVKATITSSS 3761
Range 4: 3831 to 4031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 55/67(82%) | 0/67(0%) | Minus/Minus |
Query 348 TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRAR 548 TDIMKVAVSS+VCLRY ALW+IGLAPHCP PSSSICSVRPASVYCS SS AF+SNG NS SFSL + Subject 3831 TDIMKVAVSSDVCLRYRALWVIGLAPHCPYPSSSICSVRPASVYCSLSSFAFRSNGINSFSFSLNGK 4031
Range 5: 3489 to 3758 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 47/90(52%) | 0/90(0%) | Plus/Plus |
Query 6 RGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI 275 RGC+G L+*+ DR+QCGQE ERG ED+QE A EDP+RRD+ KI+H+ +R++AHS + +RGKP K LRG+ G R L +V++I Subject 3489 RGCNGGLY*VSRGDRHQCGQEAERGAIEDVQE*APPEDPQRRDIQKIQHHRSREKAHS*SLDCLRGKPLSK*RGLRGKAGRRPLPQVSII 3758
Range 6: 3816 to 4079 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 39/88(44%) | 0/88(0%) | Plus/Plus |
Query 333 ANEDPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGLWAMGR*PNEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL*GEQEKV 596 A++D + EA *V + +G+GG A+H* A+ + GG+ MG P++P G+I QA+ R+ + HDVG +A KV KL*GE EKV Subject 3816 ADKDSLTVKREAE*VDTV*SEGEGGQRAIH*GWAH*TDR*GGVRTMGGQPDDPQGSISQAYIRRYGNLHDVGEEASKV*KL*GE*EKV 4079
Range 7: 3844 to 4083 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 39/80(49%) | 0/80(0%) | Minus/Minus |
Query 361 EILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLL 600 ++LSP+PLI S+P* L +RHHE +V +PE+* L+ H V PL + LL+ L P +SVLL++LL L ++ QLI+LL Subject 3844 QVLSPIPLIASIP*TLLHRHHEGCRIV*CMPEI*SLVGHRVGPPLSVPLLIYLFSAPSLSVLLSVLLRLQIKRYQLIQLL 4083
Range 8: 3488 to 3781 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 51/98(52%) | 0/98(0%) | Minus/Minus |
Query 5 LLRCLRTRITVTSDRDLQPISPRNQHCLPGGFPRI*LQPPECASLRA**CLIF*TSLRSGSSVKARSWMSSVTPLSISCPH*LRSLPWI**RLPSHPR 298 L RCL I T R L P PR+ L GFPR + ECA R *C IF S R GSS A SW SS+ PLS SCPH* RS **R P HPR Subject 3488 LPRCLHRGIIET*GRGLLPAFPRSPRYLLSGFPRRQSRLQECAFSRER*CWIFCMSRR*GSSGGAHSWTSSIAPLSASCPH*WRSPLET**RPPLHPR 3781
Range 9: 3484 to 3708 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 39/75(52%) | 0/75(0%) | Minus/Minus |
Query 1 NIACQAVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILVL 225 ++ C AVFLE + RNVL +E D+ SS L+ +DLP +L LG PQ*HLFQ VH D DL S+G+H+ILV+ Subject 3484 HVTC*AVFLEDNQGFRNVLFHESDDAGSSVCLAAEDLPEELTLGRPQ*HLFQLPVHTDGDLPSRPSKGHHYILVV 3708
Range 10: 3845 to 4078 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 37/78(47%) | 0/78(0%) | Minus/Minus |
Query 362 TFSCSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWPLSRMGPTH*AS 595 TFS SPH+F TL A PTS*+ R A* I P GS G PI +PP A+ QC A PP P + TH AS Subject 3845 TFSYSPHSFYTLDASSPTS*RLPYRLMYA*DIEPCGSSGWPPIVRTPPHLSVQCAQPQCIALCPPSPSDQTVSTHSAS 4078
Range 11: 3488 to 3628 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 28/47(60%) | 0/47(0%) | Plus/Plus |
Query 5 TRM*W*PSLDPGERSQSMWTRN*KRCY*GHPRASFYGRS*TERRLED 145 TRM*W P L RS S+WT +*KRCY*G PR S GRS R ED Subject 3488 TRM*WWPLLGLEGRSPSVWTGS*KRCY*GRPRVSSSGRSSAARHTED 3628
Range 12: 3845 to 4078 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 37/78(47%) | 0/78(0%) | Plus/Plus |
Query 362 RSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGTGES 595 RS MS *R RR S+TL G ++ RR NG T+* R Y SG T + S*CR +S *G E MRG GES Subject 3845 RS*MS*YRLI*RRRRTESNTLRLGALNR*MRRGTDNGGPTR*PTRLYISGIHQTIRQPS*CR*RSV*GIEAMRGIGES 4078
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 13
Range 1: 3803 to 4069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.0 bits(440) | 0.0 | 82/89(92%) | 0/89(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKYL 600 P++THL LSEKLNEL PFDLKAKEDREQYTDAGRTEQIDEEGY QW ANPMSHKALYLRHTSDDTATFMMSVKKRLRYR+YEGNRRKYL Subject 3803 PIRTHLPLSEKLNELVPFDLKAKEDREQYTDAGRTEQIDEEGYAQWSANPMSHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYL 4069
Range 2: 3470 to 3736 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.6 bits(404) | 0.0 | 81/89(91%) | 0/89(0%) | Plus/Plus |
Query 1 EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS 267 EDEDVMVAFTRSRGEIAI+VD+KLKE+LLRTSKSELL+KIL+GET+RRS+II LVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS Subject 3470 EDEDVMVAFTRSRGEIAIDVDRKLKEMLLRTSKSELLKKILSGETYRRSSIIALVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS 3736
Range 3: 3472 to 3744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 73/91(80%) | 0/91(0%) | Minus/Minus |
Query 3 DNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS 275 D+SD R*GSPA+LSS*STLLA+RFSS M+TASGMCF TS +M DLL VSP RIF +SSLLDVLSN SF+F ST IAISPLDLVKATITSSS Subject 3472 DSSDLR*GSPASLSS*STLLAKRFSSKMMTASGMCFLTSAMMLDLL*VSPLRIFFRSSLLDVLSNISFSFRSTSIAISPLDLVKATITSSS 3744
Range 4: 3811 to 4017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 54/69(78%) | 0/69(0%) | Minus/Minus |
Query 342 TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRARWV 548 TDIMKVAVSS+VC RY ALWLIGLA HC PSSSICSVRPASVYCSRSS AF+SNG +S SFSL+ + V Subject 3811 TDIMKVAVSSDVCRRYKALWLIGLALHCAYPSSSICSVRPASVYCSRSSFAFRSNGTSSFSFSLKGKCV 4017
Range 5: 3794 to 4069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 39/92(42%) | 0/92(0%) | Minus/Minus |
Query 325 EILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLLTEGQMGLHWLQC 600 E+ V + S+P + HHES ++ VPEV +AH V APL + V L R GISVLLT+L ++W QL++LL +GQM L+C Subject 3794 EVFPSVTFVASIPQTFLHGHHESSRIIGCVPEVQGFVAHRVGAPLRVPFFVYLFRATGISVLLTVLFRFQIKWDQLVQLLAQGQMRPDGLKC 4069
Range 6: 3473 to 3694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 40/74(54%) | 0/74(0%) | Minus/Minus |
Query 4 NIACQAVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILV 225 +I CQA+F E D +VLL +RD+ SS L+ QDL *+ L C Q*HLF F +HIDCDL S EG+HHI V Subject 3473 HITCQAIFFEDDDCFGDVLLDKRDDAGSSVSLATQDLL*EFTLRCSQ*HLF*FPIHIDCDLPSRSCEGHHHIFV 3694
Range 7: 3475 to 3744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 45/90(50%) | 0/90(0%) | Plus/Plus |
Query 6 RGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI 275 R CDG LH I DRN+CG E +R VTE+I E EDPE RD+ KI+H+ A +EAH +H+R K GK C LRGE L ++T I Subject 3475 RRCDGGLHKI*RGDRNRCGSETKRDVTENI*E*TPKEDPEWRDLQKIQHHRACQEAHPRSSHHLRRKSLGK*CGLRGEARR*PLPQITAI 3744
Range 8: 3816 to 4055 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 35/80(44%) | 0/80(0%) | Plus/Plus |
Query 347 IWPSVRSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGT 586 I P RS SW H *+ +R VSSTLMP R++ T++ +GA T *A + TSGT + LS*C ++ *G E + T Subject 3816 ICP*ARS*TSWSHLI*KRKRTVSSTLMPVARNR*TKKGTRSGAPTL*ATKPCTSGTHPMIRLLS*CP*RNV*GIEATKVT 4055
Range 9: 3802 to 4044 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 32/81(40%) | 0/81(0%) | Plus/Plus |
Query 333 ANEDPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGLWAMGR*PNEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL 575 A++D + EA GPI + + G *AVH*CR++G + R + A+ R P EP +P AH + +FHDV + +V KL Subject 3802 AHQDAFALEREAERAGPI*SESERGP*AVH*CRSHGTDRRRRVRAVERQPYEPQSLVPPAHIR*YGYFHDVREETSEV*KL 4044
Range 10: 3471 to 3614 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 28/48(58%) | 0/48(0%) | Plus/Plus |
Query 2 RTRM*W*PSLDPGERSQSMWTRN*KRCY*GHPRASFYGRS*TERRLED 145 +T+M*W PS D RSQSMW N*KRCY* H R + RS* R ED Subject 3471 KTKM*WWPSQDLEGRSQSMWIGN*KRCY*EHLRVNS*RRS*VARLTED 3614
Range 11: 3672 to 3752 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 14/27(52%) | 0/27(0%) | Plus/Plus |
Query 203 KTAWQAMLITRRDWLEIPI*SHCYPCT 283 K AWQ M ITRR P +HCY T Subject 3672 KIAWQVMWITRRGSPVTPTSNHCYRFT 3752
Range 12: 3474 to 3767 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 49/98(50%) | 0/98(0%) | Minus/Minus |
Query 5 LLRCLRTRITVTSDRDLQPISPRNQHCLPGGFPRI*LQPPECASLRA**CLIF*TSLRSGSSVKARSWMSSVTPLSISCPH*LRSLPWI**RLPSHPR 298 LL+C R I V R + SPRN H LP F R * CAS +A *C IF S SGSS+ S M SVT L +S PH LRS I *R PSH R Subject 3474 LLQCPRKAIAVI*GRGHRRASPRNPHYLPSDFLRR**LLRGCAS*QAR*CWIFCKSRHSGSSLGVHS*MFSVTSLLVSDPHRLRSPL*IL*RPPSHLR 3767
Range 13: 3831 to 4055 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 30/75(40%) | 0/75(0%) | Minus/Minus |
Query 362 CSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWPLSRMGPTH*AS 586 C +F T TS*K + CA G GS G R A + R P RHQCTAH P +MGP AS Subject 3831 CYLRSFYTSDVSSRTS*K*PYHRMCAGGTRLCGS*GWRSTARTLLRLSVPCDRHQCTAHGPLSLSDQMGPARSAS 4055
Grapevine virus A isolate GTR1SD 1, complete genome
Sequence ID: DQ855081.2 Length: 7352 Number of Matches: 8
Range 1: 3808 to 4071 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(408) | 0.0 | 78/88(89%) | 0/88(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY 597 P+KTHLALSEKLNELAPFDLKAKEDREQYT+AGRTEQIDEEGY ANPM+HKALYLRHTSDDTATFMMSVKKRLR+RN+E NRRKY Subject 3808 PVKTHLALSEKLNELAPFDLKAKEDREQYTEAGRTEQIDEEGYKGEDANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNFEANRRKY 4071
Range 2: 3475 to 3741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.9 bits(321) | 0.0 | 62/89(70%) | 0/89(0%) | Plus/Plus |
Query 1 EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS 267 EDEDVMVA TRSRGEI I+ LK+ L+ T+KS LLRK+L GET+RRS I+ +VKKHIPE ++FEE+RLA NVDYE RLAGDPYLKS Subject 3475 EDEDVMVALTRSRGEIGIHASPALKKSLISTAKSTLLRKVLKGETYRRSEIVAMVKKHIPEVTVMFEESRLAENVDYEARLAGDPYLKS 3741
Range 3: 3477 to 3755 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 53/93(57%) | 0/93(0%) | Minus/Minus |
Query 3 YKDNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS 281 YK++SD R GSPA+L+S*ST A SSN+ SGMCF T + DLL VSP FRKS LL V F I ISPLDLVKAT+TSSS Subject 3477 YKESSDLRYGSPASLAS*STFSANLLSSNITVTSGMCFLTIATISDLL*VSPLSTFRKSVLLAVDIKDFFKAGLA*IPISPLDLVKATMTSSS 3755
Range 4: 3813 to 4022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 52/70(74%) | 0/70(0%) | Minus/Minus |
Query 339 TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRARWVF 548 TDIMKVAVSS+VCL+ ALW+IGLA PSSSICSVRPASVYCS SSLA +SNGA+S +FSL AR VF Subject 3813 TDIMKVAVSSDVCLK*RALWVIGLASSPLYPSSSICSVRPASVYCSLSSLALRSNGASSFNFSLSAR*VF 4022
Range 5: 3475 to 3699 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 27/75(36%) | 0/75(0%) | Minus/Minus |
Query 1 NIACQAVFLEYDYSLRNVLLYERDNV*SSKRLSVQDLP*KLALGCPQ*HLFQFLVHIDCDLSPGSSEGYHHILVL 225 ++ Q FLE+ LR+VL RD++ SS S + L + ALGC L ++ D SP S +G H +L+L Subject 3475 HVLSQPAFLEHHRDLRDVLFDHRDDLGSSVGFSFEHLSQECALGCRYQRLL*SWASMNSDFSP*SGQGDHDVLIL 3699
Range 6: 3869 to 4069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 26/67(39%) | 0/67(0%) | Minus/Minus |
Query 395 TFSCSPHNFCTLGAF*PTS*KWLCRQKCA*GIVPYGSLG*RPIAHSPPRQFAPYARHQCTAHDPPWP 595 T C P NF +F* TS*KW C C GS G P+ +P + A +A+ QC A WP Subject 3869 TSFCWPRNF*ISISF*LTS*KWPCHLMCVSSKGLCGS*GWHPLLCTPLHRSALFAQPQCIAPCLLWP 4069
Range 7: 3570 to 3755 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 21/62(34%) | 0/62(0%) | Plus/Plus |
Query 96 QERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVILV 281 QE + +RR++ KI+ ++AH GG +RGK G + LRG W S+ ++ +LV Subject 3570 QEHTLAKGAQRRNLQKIRDRRDGQKAHPGGHGDVRGKQVG*ERGLRG*TRW*SIPQIATLLV 3755
Range 8: 3830 to 4060 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 29/77(38%) | 0/77(0%) | Plus/Plus |
Query 356 SVRSLMSWPHST*RPRRIVSSTLMPGVRSKLTRRAMGNGALTQ*AIRHYTSGTLLTTQPLS*CRLKSA*GTEIMRGT 586 SV++ MS T RP++ S+TL G +S+ +R T * + +T T T+PLS*C+ K * +EI R T Subject 3830 SVKN*MS*HRLTSRPKKTGSNTLRLGEQSRSMKRGTKERMPTL*PTKPFT*DTHQMTRPLS*CQSKRD*DSEISRPT 4060
Grapevine virus A, complete genome
Sequence ID: AY244516.1 Length: 7378 Number of Matches: 10
Range 1: 3804 to 4067 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
184.4 bits(399) | 0.0 | 76/88(86%) | 0/88(0%) | Plus/Plus |
Query 334 PMKTHLALSEKLNELAPFDLKAKEDREQYTDAGRTEQIDEEGYGQWGANPMSHKALYLRHTSDDTATFMMSVKKRLRYRNYEGNRRKY 597 P+KTHLALSEK+NELAPF+LKAKE REQYTDAGRTEQIDEEGY ANPM+HKALYLRHTSDDTATFMMSV+KRLR+RNYE NRRKY Subject 3804 PVKTHLALSEKMNELAPFELKAKEYREQYTDAGRTEQIDEEGYSGEEANPMTHKALYLRHTSDDTATFMMSVRKRLRFRNYEANRRKY 4067
Range 2: 3471 to 3737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.3 bits(322) | 0.0 | 61/89(69%) | 0/89(0%) | Plus/Plus |
Query 1 EDEDVMVAFTRSRGEIAINVDKKLKEVLLRTSKSELLRKILNGETFRRSNIITLVKKHIPEAVIIFEENRLASNVDYEERLAGDPYLKS 267 EDEDVMVA TRSRGEI INV LK+ L+ ++KS LLRK+L GET+RRS I+ + +KHIPE ++FEE+RLA NVDYE RLAGDPYLKS Subject 3471 EDEDVMVALTRSRGEIGINVTNALKKTLIASAKSTLLRKVLKGETYRRSEIVAMARKHIPEVTVLFEESRLAENVDYEARLAGDPYLKS 3737
Range 3: 3812 to 4018 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
97.3 bits(206) | 0.0 | 51/69(74%) | 0/69(0%) | Minus/Minus |
Query 342 TDIMKVAVSSEVCLRYSALWLIGLAPHXXXXXXXXXSVRPASVYCSRSSLAFKSNGANSLSFSLRARWV 548 TDI+ VAVSSEVCLRY ALW+IGLA PSSSICSV PASVYCS SLAF S GA+S FSL ARWV Subject 3812 TDIINVAVSSEVCLRYKALWVIGLASSPLYPSSSICSVLPASVYCSLYSLAFNSKGASSFIFSLNARWV 4018
Range 4: 3473 to 3745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 43/91(47%) | 0/91(0%) | Minus/Minus |
Query 3 DNSDFR*GSPANLSS*STLLARRFSSNMITASGMCFFTSVIMFDLLNVSPFRIFRKSSLLDVLSNTSFNFLSTLIAISPLDLVKATITSSS 275 ++SDF+ GSPANL+S*ST A SS SG+C + + L VSP F S L + N + L T + ISPLDLV+ATITSSS Subject 3473 ESSDFKYGSPANLAS*STFSASLLSSKRTVTSGICLRAMATISERLYVSPLSTFLSSVLFALAINVFLSALVTFMPISPLDLVRATITSSS 3745
Range 5: 3953 to 4066 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 17/38(45%) | 0/38(0%) | Plus/Plus |
Query 483 NEP*GTIPQAHF*RHSHFHDVG*KAPKVQKL*GEQEKV 596 ++P G +P+ H * H H +DV +A +QKL*G+Q++V Subject 3953 DDPQGFVPKTHL**HCHVYDVCKEAIALQKL*GKQKEV 4066
Range 6: 3473 to 3745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 23/91(25%) | 0/91(0%) | Plus/Plus |
Query 3 GRGCDGSLH*IQGRDRNQCGQEIERGVTEDIQERAFTEDPERRDV*KIKHYHARKEAHSGGCNHIRGKPPGKQC*LRGEIGWRSLSEVTVI 275 G GCDG I+ +R++ Q + V + ++ A E + D+* + +A++ +RG+ ++C L + W S+ EVT + Subject 3473 G*GCDGGPDKIKRGNRHKRHQCTQEDVDRERKKYAAQEGTQGGDI*AF*NRCHGPQAYTRSHRSLRGE*ASRKCGL*S*VSW*SILEVTAL 3745
Range 7: 3812 to 3931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 17/40(42%) | 0/40(0%) | Plus/Plus |
Query 342 DPSGPQ*EA**VGPIRLKGQGGS*AVH*CRAYGAN*RGGL 461 +PS +*E GP R++GQ AVH C A+ RGG+ Subject 3812 NPSRIE*EDERTGPFRIEGQRVQRAVHGCWKD*ADRRGGV 3931
Range 8: 3798 to 4067 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 38/90(42%) | 0/90(0%) | Minus/Minus |
Query 328 ILSPVPLIISVP*ALFNRHHESGCVVRSVPEV*CLMAHWVSAPLPIALLVNLLRTPGISVLLTILLGL*VEWGQLIKLLTEGQMGLHWLQ 597 +L V LI+S +L RHH+ G V+R V V L+ H + I LLV LL I VLL++L GL E GQ + LLT+ +MG + Q Subject 3798 VLPSVCLIVSEAQSLPYRHHKRGSVIRGVS*VQSLVGHRIGLFPAIPLLVYLLSPSSIRVLLSVLFGLQFERGQFVHLLTQCEMGFNRFQ 4067
Nucleotide Sequence (454 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
355.3 | 1261.6 | 37% | 2.768e-96 | 50% | DQ787959.1 | |
355.3 | 1201.1 | 37% | 2.797e-96 | 45% | DQ855088.1 | |
355.3 | 1236.7 | 33% | 2.797e-96 | 47% | JX559641.1 | |
325.0 | 769.8 | 39% | 3.551e-87 | 36% | DQ855081.2 | |
323.6 | 794.1 | 39% | 9.208e-87 | 37% | DQ855087.2 |
Alignments
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 7
Range 1: 580 to 1032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
355.3 bits(769) | 0.0 | 140/151(93%) | 0/151(0%) | Minus/Plus |
Query 2 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT 454 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGC KT+DS+SRSWTIT+LQTVGAH +FSAVLGSFLT DSYKYDNFT+INPNDILRGRRGCKPLYLRARMIRPT Subject 580 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCRKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMIRPT 1032
Range 2: 582 to 1031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.2 bits(568) | 0.0 | 119/150(79%) | 0/150(0%) | Plus/Minus |
Query 3 VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 VG IILARKY GLHPLRPL +S GLM VKLSYLYES V+KLPRTAL CAPTV S VIVQLLD ES VL HPS+QGFTG VYAPSALPSGY V+ PS +S V*ASGN+L PASTSAGYTML TTLFACS DPRNLCISSKLQY TSS Subject 582 VGLIILARKYKGLHPLRPLSMSFGLMTVKLSYLYESSVRKLPRTALKMWCAPTVCSFVIVQLLDFESIVLRHPSSQGFTGCVYAPSALPSGYQVSLPSRRSNV*ASGNRLWLKPASTSAGYTML*TTLFACSSDPRNLCISSKLQYWTSS 1031
Range 3: 580 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 84/149(56%) | 0/149(0%) | Plus/Minus |
Query 8 ADHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV 454 +DH + I RLAPSSPP+ +IRVDD EVVI V*+ *E TQDCTE + P GL+ CD PA + SLAAP *PRV+ L VRP C IWIP PP Q++ + L E TL E ++L WVHNA+ H LC+ RP KPLH I P+L+LVV Subject 580 SDHPGS*IQRLAPSSPPEYVIRVDDGEVVILV*VLC*EATQDCTEDVVRPDGLQLCDSPAPRL*VYSLAAP**PRVYRLCVRPFCLTIWIPSKPPISQIKRVSLWEQTLVETSVHLCWVHNAIDHPLCMLERP*KPLHLI*APILDLVV 1026
Range 4: 753 to 1022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 53/90(59%) | 0/90(0%) | Minus/Plus |
Query 12 MVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKND 281 +VSRW R GVH+T +PL TRV QD R ++ +LD HKA NR G +QCSPG* NRG IQ+*QLH HQP *+++GAKRVQA +F ++D Subject 753 LVSRW*GRRGVHTTGKPLATRVPQDYRLKV*ELDYHKAANRRGAPHLQCSPG*LPNRGLIQV*QLHRHQPE*HTQGAKRVQAFVFTSQDD 1022
Range 5: 582 to 725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 25/48(52%) | 0/48(0%) | Minus/Plus |
Query 309 RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLY 452 RRG ILE *+AKVS V+R KE G+ HCVPS G + + +P GL+ Subject 582 RRGPILELR*DAKVSRVARACKEGGL*HCVPSRGGRWFQPKSVPRGLH 725
Range 6: 581 to 997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.1 bits(319) | 0.0 | 77/139(55%) | 0/139(0%) | Minus/Plus |
Query 37 TTRFNTGVWMKCKGFWGL*NTQREWYTALCTQRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMIF*GGEEGAS 453 TTR N G M+CKGF G + QR W ALCTQ+R S +V S R GG GIQM +Q+GRT N+*TLGY GAARL AG SQ KP G + SVQSWV S* HT+MTTS SST M + GGEEGAS Subject 581 TTRSNIGA*MRCKGF*GRSSMQRGWSIALCTQQRWTLVSTKVCSQRLTRLICEMGGLLGIQMVRQKGRTHNR*TLGY*GAARL*TQSLGAGLSQSCKPSGRTTSSVQSWVAS*QRTHTSMTTSPSSTRMTYSGGEEGAS 997
Range 7: 581 to 1006 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 71/142(50%) | 0/142(0%) | Plus/Minus |
Query 28 NITACTLFAPSEYH*G**L*SCHICMNPRLRNYPGLH*TRDVPPRFGAL*LSSFWIWNRQSCCTRVTKGSLVECTPPLLCHLDTMLTALPSSRKYRPQGINSDRTPHLPPLGTQCCIPLSLRVLETPETFAFHPNSSIEPRR 453 N ACTLFAP H G** *SCH CM+P L +YPGLH* P RF AL* SS + SC T V KG V CTP L HLDT + + + +P G + P LGTQC P SL T ETFA H +S+I PRR Subject 581 NTKACTLFAP*VCHSG**R*SCHTCMSPLLGSYPGLH*RCGAPRRFAAL**SSS*TLSL*SCGTLVAKGLPVVCTPLLPYHLDTK*ASHLADQTCKPLGTDFG*NQRPPLLGTQCYRPPSLHARATLETFASHLSSNIGPRR 1006
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 7
Range 1: 580 to 1032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
355.3 bits(769) | 0.0 | 140/151(93%) | 0/151(0%) | Minus/Plus |
Query 2 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT 454 HDEVQYWSLDEMQRFLGSLEHA RVVYSIVYPAEVDAGF QSLFPEAYTFDL++GRLTWYPDGKAEGAYTQPVNPWLLGCSKT+DS+SRSWTIT+LQTVGAH +FSAVLGSFLT DSYKYDNFT+INPNDILRGRRGCKPLYLRARMIRPT Subject 580 HDEVQYWSLDEMQRFLGSLEHANRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTVINPNDILRGRRGCKPLYLRARMIRPT 1032
Range 2: 582 to 1031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.5 bits(573) | 0.0 | 120/150(80%) | 0/150(0%) | Plus/Minus |
Query 3 VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 VG IILARKY GLHPLRPL IS GL+ VKLSYLYES V+KLPRTAL CAPTV S V+VQLLD ES VLLHPS+QGFTG V APSALPSGY V+ PS KS V*ASGN+L PASTSAGYTMLYTTL ACSRDP+NLCISSKLQY*TSS Subject 582 VGLIILARKYKGLHPLRPLSISFGLITVKLSYLYESSVRKLPRTALKIWCAPTVCSFVMVQLLDFESIVLLHPSSQGFTGCV*APSALPSGYQVSLPSRKSNV*ASGNRLWLKPASTSAGYTMLYTTLLACSRDPKNLCISSKLQY*TSS 1031
Range 3: 580 to 1029 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 77/150(51%) | 0/150(0%) | Plus/Minus |
Query 5 WADHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV 454 W+DH +Q+ RLAP S P+ I+RVD EVV+ V + *E TQ+CTE + P+GL+ CD PAS + SLAAP *PR++ L V P C IWIP PP Q++ + L + TL E I+L VHNA++H + V RP K LH I PVLNLVV Subject 580 WSDHPGSQVQRLAPPSSPEYIVRVDHGEVVVLVRVLC*EATQNCTEDMVRPNGLQLCDGPAS*L*VYSLAAP**PRIYRLCVGPFCLTIWIPSKPPIPQIKRVSLWKQTLVETSIHLCRVHNAIHHPVSVLERP*KSLHLI*APVLNLVV 1029
Range 4: 582 to 1031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 71/150(47%) | 0/150(0%) | Minus/Plus |
Query 3 RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKNDPPN 452 RRGSILE *+AK+ VSR R + G+ HCVP G C + + + GL+ G +VSRW R G+H+T + L TRVQQD R +++KLD+HKA +R G +QCS G* NRG +Q+ QLH QP Y++G K VQA + A ++D N Subject 582 RRGSILELR*DAKIFRVSRAR*QGGV*HCVPCRGGCWFQPKSVSRGLHV*FAGWEAYLVSRW*GRRGLHTTGKSLATRVQQDYRLKVKKLDHHKAADRWGAPYLQCSSG*LPNRGLVQVRQLHRDQPERYTQGTKGVQAFVLASQDDQTN 1031
Range 5: 743 to 1030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 49/96(51%) | 0/96(0%) | Minus/Plus |
Query 4 GG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMIF*GGEEGASRYICVQE*SAQ 291 GG GIQM +Q+G T N+* LGY GAARL EAG SQ +P G SVQ WV S* T+ TTS ST I+ G E GAS C *S Q Subject 743 GGLLGIQMVRQKGPTHNR*ILGY*GAARL*TQSQEAGPSQSCRPLGRTISSVQFWVAS*QRTRTSTTTSP*STRTIYSGDEGGASLCTCEPG*SDQ 1030
Range 6: 581 to 706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 23/42(55%) | 0/42(0%) | Minus/Plus |
Query 328 TTRFNTGVWMKCKGFWGL*NTQREWYTALCTQRR*MRGSVRV 453 TTRFNTG M+CK F GL +T W ALCT +R M S +V Subject 581 TTRFNTGA*MRCKDF*GLSSTLTGWCIALCTLQRWMLVSTKV 706
Range 7: 581 to 1009 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 64/143(45%) | 0/143(0%) | Plus/Minus |
Query 25 ANITACTLFAPSEYH*G**L*SCHICMNPRLRNYPGLH*TRDVPPRFGAL*LSSFWIWNRQSCCTRVTKGSLVECTPPLLCHLDTMLTALPSSRKYRPQGINSDRTPHLPPLGTQCCIPLSLRVLETPETFAFHPNSSIEPRR 453 A+ ACT F P Y G* *SC C +P L +YP LH* P R AL* SSF + SCCT V K V C P L HLDT + P+++ +P + H P GTQC P R ET + FA H +SSIEPRR Subject 581 ASTKACTPFVP*VYRSG*SR*SCRTCTSPLLGSYPELH*RYGAPQRSAAL*WSSFLTLSL*SCCTLVAKDLPVVCRPLLPYHLDTK*ASHPANQTCKPLETDFG*NQHPPLQGTQCYTPPC*RARETLKIFASHLSSSIEPRR 1009
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 6
Range 1: 566 to 1018 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
355.3 bits(769) | 0.0 | 142/151(94%) | 0/151(0%) | Minus/Plus |
Query 2 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT 454 HDEVQYWSLDEMQRFLGSL+H KRVVYSIVYPAEVDAGF QSLFPEAYTFDLK+GRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDS SRSWTIT+LQTVGAH +FSAVLGSFLT DSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT Subject 566 HDEVQYWSLDEMQRFLGSLKHVKRVVYSIVYPAEVDAGFSQSLFPEAYTFDLKDGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSESRSWTITKLQTVGAHHIFSAVLGSFLTEDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT 1018
Range 2: 568 to 1017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
275.1 bits(594) | 0.0 | 121/150(81%) | 0/150(0%) | Plus/Minus |
Query 3 VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 VGRIILA +Y GLHPLRPL +S GLM+VKLSYL ES V+KLP+TAL CAPTV + VIVQLLD ESTVLLHPSNQGFTG VYAPSALPSGYHVN PSF+SKV*ASGN+L* PASTSAGYTMLYTTLF C +PRNLCISSKLQY TSS Subject 568 VGRIILALRYKGLHPLRPLSMSFGLMMVKLSYL*ESSVRKLPKTALKMWCAPTVCNFVIVQLLDSESTVLLHPSNQGFTGCVYAPSALPSGYHVNLPSFRSKV*ASGNRL*LKPASTSAGYTMLYTTLFTCLSEPRNLCISSKLQYWTSS 1017
Range 3: 568 to 1017 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.0 bits(369) | 0.0 | 75/150(50%) | 0/150(0%) | Minus/Plus |
Query 3 RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKNDPPN 452 R G ILE G*NAK+SG+++T ++ +QHC+P G +S+ IP L+FR E R VN+V RW SRGG+H+ EPLVTRV +CR + +LD+HK N GG +QC G* +RGF+Q+*QLH+HQP +++G+K V A + ++DPPN Subject 568 R*GPILELG*NAKISGLAQTCEKGCVQHCIPCRGGRWFQSKPIPRSLHFRSERREVNVVPRW*SRGGIHAAGEPLVTRV**NCRL*V*ELDDHKVANSGGAPHLQCRFG*LPDRGFLQV*QLHHHQPERHTQGSKGV*AFVSQSQDDPPN 1017
Range 4: 566 to 1015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.6 bits(366) | 0.0 | 79/150(53%) | 0/150(0%) | Plus/Minus |
Query 5 WADHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV 454 WADH ++I RL P S P+ ++RVDD EVVI V I E TQ+ TE + PH L+ CD PA + S P *PRVH L V PLCF IW+P *PP Q+ES+G E* LTE ++L V+NAV++ +F R QK LHFIQ PVL+L+V Subject 566 WADHPGSEIQRLTPPSTPEYVVRVDDGEVVILVRILCQEATQNGTEDVVRPHCLQLCDRPAPRLRVYSFTTP**PRVHRLRVCPLCFTIWVPR*PPVFQIESVGFWE*ALTETSVHLCRVYNAVHNPFHMFERAQKSLHFIQAPVLDLIV 1015
Range 5: 567 to 1016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 75/150(50%) | 0/150(0%) | Minus/Plus |
Query 4 TTRFNTGVWMKCKGFWGL*NTQREWYTALCTQRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMIF*GGEEGASRYICVQE*SAQ 453 T R NTG WMKCK FW N + TAL T +R SV+ YS +P LS *+ GG* G QM KQRG T ++*TLGY G +L AG+SQ K WG + SV WV S* I T+MTTS SST + G E G S I *SAQ Subject 567 TMRSNTGAWMKCKDFWARSNM*KGLCTALYTLQRWTLVSVKAYSQKPTLSI*KTGG*RGTQMVKQRGHTRSR*TLGY*GVVKL*TLSLGAGRSQSCKQWGRTTSSVPFWVAS*QRILTSMTTSPSSTRTTYSGVEGGVSLCISEPG*SAQ 1016
Range 6: 567 to 1016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.5 bits(261) | 0.0 | 71/150(47%) | 0/150(0%) | Plus/Minus |
Query 4 LGGSFLHANITACTLFAPSEYH*G**L*SCHICMNPRLRNYPGLH*TRDVPPRFGAL*LSSFWIWNRQSCCTRVTKGSLVECTPPLLCHLDTMLTALPSSRKYRPQGINSDRTPHLPPLGTQCCIPLSLRVLETPETFAFHPNSSIEPRR 453 LGGS + A T F P G** *SCH C NP +YP H* PP F L* SS + Q T VTKGS C PPLL HL T LT+ S RK R GI D P G QCC V +PE FAFHP+SSI P R Subject 567 LGGSSWL*DTKAYTPFDP*VCRSG**W*SCHTCKNPLSGSYPKRH*RCGAPPLFATL*SSSS*TQSLQFYYTLVTKGSPAACMPPLLYHLGTTLTSRLSDRKCRLLGIGFD*NQRPPLQGIQCCTQPFSHV*ASPEIFAFHPSSSIGPHR 1016
Grapevine virus A isolate GTR1SD 1, complete genome
Sequence ID: DQ855081.2 Length: 7352 Number of Matches: 6
Range 1: 583 to 1035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
325.0 bits(703) | 0.0 | 126/151(83%) | 0/151(0%) | Minus/Plus |
Query 2 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT 454 HDEVQYWSLDEMQRFLGSL RVVYSI+YPAEV+AG+ QSLFPEAYTFDLKEGR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTIT+LQTVGAH LFSA+ GS+LT DSYKYDNFT+INPNDILRGRRG KPLYLRARMI+PT Subject 583 HDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIRGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPT 1035
Range 2: 585 to 1034 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 96/150(64%) | 0/150(0%) | Plus/Minus |
Query 3 VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 VG IILAR+YNGL PL P R+SLGL+ VKLSYL ES V+ LP AL + APTV S V+V L LES VL H + G G VYAPSALPSGY + PS +S V*ASG +L* PASTSAG MLYTTLF + PR CISSKLQY TSS Subject 585 VGLIILARRYNGLLPLLPRRMSLGLITVKLSYL*ESSVR*LPLMALKRW*APTVCSFVMVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSKLQYWTSS 1034
Range 3: 649 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 49/126(39%) | 0/126(0%) | Plus/Minus |
Query 11 DHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSL 388 DHS ++ LA Q++I VD EV+IFV I * T D TE+ + + L+ C P S GID L A E PR+ L + L F I +P P L+++ IG E L P +Y WV+ A+++S+ Subject 649 DHSGPEVQWLASPPSSQDVIGVDHSEVIIFVGILR*ITPPDGTEKVVSTNRLQLCYGPCSILGIDRLRASEKPRIDRLGICTLGFTIRVPNHPTLLKIKCIGFWEEALRVPCLYFCWVNYAIHYSI 1026
Range 4: 588 to 1025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 53/146(36%) | 0/146(0%) | Minus/Plus |
Query 12 RGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKND 449 RG ILE G*+A +S K S + H +PS R V S+ +P LY G ++V W SRG ++ T + + +++ D RFQ +D++KA N + QC G N GF+QI* LH QP *+ + QA++ +ND Subject 588 RGPILELG*DAALSR*FEFSK*SSV*HNLPSRSRGRVLSKPLPRSLYI*S*GG*GDLVPGW*SRGCIYPTYQSVASQML*DDRFQG*SMDHNKAANGWCSPPFQCHQGELSNGGFLQI**LHCDQPQ*HPARKEGKQAIVPPGQND 1025
Range 5: 674 to 970 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 40/99(40%) | 0/99(0%) | Minus/Plus |
Query 67 TQRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLM 363 TQ++* +G+++ S +PI R+ G* G +M K R N G+S A R SIP E G Q K + SV S V * I TNM TS ST M Subject 674 TQQK*RQGTLKASSQKPIHLILRRVG*FGTRMVKPRVHIPNLSIRGFSDALRRSIPRIEHGP*QSCKRLVLTTFSVPSGGVI*RRIPTNMITSL*STPM 970
Grapevine virus A isolate BMo32 1, complete genome
Sequence ID: DQ855087.2 Length: 7352 Number of Matches: 6
Range 1: 583 to 1035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
323.6 bits(700) | 0.0 | 125/151(83%) | 0/151(0%) | Minus/Plus |
Query 2 HDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFGQSLFPEAYTFDLKEGRLTWYPDGKAEGAYTQPVNPWLLGCSKTVDSRSRSWTITRLQTVGAHLLFSAVLGSFLTGDSYKYDNFTIINPNDILRGRRGCKPLYLRARMIRPT 454 HDEVQYWSLDEMQRFLGSL RVVYSI+YPAEV+AG+ QSLFPEAYTFDLK+GR+ WYPDGKAEGAYTQP+NPWLL CSKT+DS+ R+WTIT+LQTVGAH LFSA+ GS+LT DSYKYDNFT+INPNDILRGRRG KPLYLRARMI+PT Subject 583 HDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKDGRVIWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIKGSYLTEDSYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPT 1035
Range 2: 585 to 1034 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 97/150(65%) | 0/150(0%) | Plus/Minus |
Query 3 VGRIILARKYNGLHPLRPLRISLGLMIVKLSYLYESPVKKLPRTALNKRCAPTVWSLVIVQLLDLESTVLLHPSNQGFTG*VYAPSALPSGYHVNRPSFKSKV*ASGNKL*PNPASTSAGYTMLYTTLFACSRDPRNLCISSKLQY*TSS 452 VG IILAR+YNGL PL P RISLGL+ VKLSYL ES V+ LP AL + APTV S VIV L LES VL H + G G VYAPSALPSGY + PS +S V*ASG +L* PASTSAG MLYTTLF + PR CISS+LQY TSS Subject 585 VGLIILARRYNGLLPLLPRRISLGLITVKLSYL*ESSVR*LPLMALKR**APTVCSFVIVHALSLESIVLEHLRSHGLIGWVYAPSALPSGYQITLPSLRSNV*ASGKRL*EYPASTSAG*IMLYTTLFTEFKLPRKRCISSRLQYWTSS 1034
Range 3: 583 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 60/148(41%) | 0/148(0%) | Plus/Minus |
Query 11 DHSCTQI*RLAPSSPPQNIIRVDDCEVVIFV*IPG*ETTQDCTEQEMCPHGLEPCDCPASGSGIDSLAAPE*PRVHWLSVRPLCFAIWIPC*PPFLQVESIGLRE*TLTEPRIYLRWVHNAVYHSLCVF*RPQKPLHFIQTPVLNLVV 454 DHS Q+ LA Q+II VD EV+IF+ I * T D T++ M + L+ C P S G+D A E P V L V LCF IW+P P L+++ IG E L P +Y W++ A+++S+ * K LH +Q P+L+LVV Subject 583 DHSGPQVQWLASPPSSQDIIGVDHSEVIIFIRIFC*ITPLDGTKKVMSTNRLQLCYSPCSILGVDCFRASEKPWVDRLGVCTLCFTIWVPNHPAILKIKCIGFWEEALRVPCLYFCWINYAIHYSIY*I*TT*KALHLVQAPILDLVV 1026
Range 4: 585 to 1025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 54/147(37%) | 0/147(0%) | Minus/Plus |
Query 12 RRGSILEFG*NAKVSGVSRTRKESGIQHCVPSGGRCGVRSEFIP*GLYFRLEGRAVNMVSRWQSRGGVHSTSEPLVTRVQQDCRFQIQKLDNHKAPNRGGTSLVQCSPG*FLNRGFIQI*QLHNHQP**YSEGAKRVQAVIFACKND 452 RRG ILE G +A +S + K S + H + S R V S+ +P LY G ++V RW SRG +H T +P+ +++ + R Q +D +KA N +S C G NR F+ I* LH QP *Y + QA++ A +ND Subject 585 RRGPILEPGRDAALSR*FKFSK*SSV*HNLSSRSRGRVLSKPLPRSLYI*S*GWQGDLVPRW*SRGCIHPTYQPMASQML*NNRLQG*SMDYNKAANGWCSSPF*CHQGELSNRRFL*I**LHCDQPQ*YPARKEGKQAIVPAGQND 1025
Range 5: 677 to 973 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 41/99(41%) | 0/99(0%) | Minus/Plus |
Query 64 QRR*MRGSVRVYSLRPILST*RKGG*HGIQMAKQRGRTLNQ*TLGYSGAARLSIPDPEAGQSQGSKPWGHISCSVQSWVVS*PGIHTNMTTSQSSTLMI 360 Q++* +G+++ S +PI R G* G QM KQR T N T G+S A + S P E G Q K I+ V S V * I NM TS ST MI Subject 677 QQK*RQGTLKASSQKPIHLILRMAG*FGTQMVKQRVHTPNLSTHGFSDALKQSTPRIEHGL*QSCKRLVLITFLVPSRGVI*QKILINMITSL*STPMI 973
Nucleotide Sequence (367 letters)
Query ID: | ds2016-55_46 |
Query definition: | No definition line |
Query length: | 439 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
271.9 | 1019.5 | 35% | 2.522e-71 | 60% | JX559641.1 | |
271.0 | 1035.7 | 24% | 4.691e-71 | 59% | DQ787959.1 | |
270.5 | 1051.3 | 28% | 6.541e-71 | 51% | DQ855088.1 | |
244.4 | 653.7 | 29% | 4.763e-63 | 41% | KC962564.1 | |
242.1 | 696.2 | 29% | 2.297e-62 | 46% | AF007415.2 |
Alignments
Grapevine virus A isolate 3138 03, complete genome
Sequence ID: JX559641.1 Length: 7346 Number of Matches: 6
Range 1: 2783 to 3148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.9 bits(587) | 0.0 | 111/122(91%) | 0/122(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 VLLGKYNKGKMHSA LEEP+EVLTSFGFAGSGKSHW QTIL+SC+VEKTL+ISPRKVLKDDWVGKISKKHKVVTFEVAF DDFGCKAIVIDEIGLLPPGY+DLVISVF P+TLVLLGDP QS Subject 2783 VLLGKYNKGKMHSAELEEPVEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFRPSTLVLLGDPLQS 3148
Range 2: 2782 to 3138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 95/119(80%) | 0/119(0%) | Minus/Minus |
Query 1 GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT 357 GSPN+TRV+G KTE+TRS *PGGSNPISS+T+AL PKSS+ ATS VTTLCFFEIFPTQSS TFLGL+ +VFSTSQL SMV Q*LFPDPAKPKEVSTS GSS AECI PLLYFP+RT Subject 2782 GSPNRTRVLGRKTEITRSM*PGGSNPISSMTIALHPKSSMNATSNVTTLCFFEIFPTQSSFSTFLGLMISVFSTSQLRSMVWHQ*LFPDPAKPKEVSTSTGSSNSAECIFPLLYFPKRT 3138
Range 3: 2794 to 3138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 69/115(60%) | 0/115(0%) | Plus/Plus |
Query 13 EVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYHSSFVR*P 357 ++Q*R+DAFC GGT+*GTDL WFRRVRKKSL NHTPEL* *+N ++ SK+G++G*LGR+DLKEAQG ++ ++ *LW+QG S+R DR+A RL S L L HS VR P Subject 2794 KIQ*REDAFC*IGGTS*GTDLFWFRRVRKKSLVPNHTPEL*C*KNTNH*SKKGAKG*LGRKDLKEAQGCDVRGCIHG*LWVQGDSHR*DRIATPRLHRSCDLSLPSKHSGSVRGP 3138
Range 4: 2783 to 3145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 72/121(60%) | 0/121(0%) | Minus/Minus |
Query 2 LRGVT*QN*SGRVKDRDDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEKN 364 L+ V *QN S +D D +I+VAG Q L+ +Y LA KVI + + + ++LVLL*DL DP+IL +L WT++*CF N TT EYGL PVTFSGPGETK GQYLNWFLQ RMHL FIV ++N Subject 2783 LKRVP*QNQSAWTED*DHKIYVAGG*QSDLIDDYRLAPKVIHECNLERHNLVLL*DLSDPIIL*HLSWTND*CFFNITTPEYGLAPVTFSGPGETKRGQYLNWFLQFSRMHLPFIVFSQEN 3145
Range 5: 2796 to 3137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
129.8 bits(277) | 0.0 | 71/114(62%) | 0/114(0%) | Plus/Plus |
Query 15 STIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIWSSRSFTLPL*FC*VT 356 +TIK RCIL WRNQLRY*P LVSPGPEKVTG KPYS VV L+KH* VQ R RM GS RSQRSTR * + MTL AR * R C PAT I S+S L FC* T Subject 2796 NTIKGRCILLNWRNQLRY*PLLVSPGPEKVTGAKPYSGVVMLKKH*SLVQERC*RMIGSERSQRSTRL*RSRLHSWMTLGARR*SSMRSDCYPPAT*IL*SQSSVQALWFC*GT 3137
Range 6: 2799 to 3137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 71/113(63%) | 0/113(0%) | Minus/Minus |
Query 18 GHLTKLEW*GERPR*PDPRSRVGATLSRL*LWPCSQSHQ*RRLQRLPPCAXXXXXXXXXXXXXXLD**LMFSQLHNSGVWFDSSDFFRTRRNQRRSVPQLVPPNWQNASCLYC 356 G LT+ E R R D SR A S *L PC+QSH * + + PCASLRS RP+HP P LD**L+F Q HNSGVWF +SDFFRTRRNQ+RSVPQLVPP QNAS LYC Subject 2799 GPLTEPECLDGRLRSQDLCSRGVAIRSHR*LSPCTQSHP*MQPRTSQPCASLRSFRPNHPLAPFLD**LVFFQHHNSGVWFGTSDFFRTRRNQKRSVPQLVPPIQQNASSLYC 3137
Grapevine virus A isolate GTR1 1, complete genome
Sequence ID: DQ787959.1 Length: 7360 Number of Matches: 7
Range 1: 2797 to 3162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.0 bits(585) | 0.0 | 110/122(90%) | 0/122(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 VLLGKYNKGKMH+A L+EP EVLTSFGFAGSGKSHW QTIL+SC+VEKTL+ISPRKVLKDDWVGKISKKHKVVTFEVAF DDFGCKAIVIDEIGLLPPGY+DLVISVFHP+TLVLLGDP QS Subject 2797 VLLGKYNKGKMHAAELDEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPSTLVLLGDPLQS 3162
Range 2: 2796 to 3152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 93/119(78%) | 0/119(0%) | Minus/Minus |
Query 1 GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT 357 GSP+ T+V+G TE+TRS *PGGS+PISS+TMAL PKSS+ ATSKVTTLCF EIFPTQSSL TFLGLI VFSTSQL SMV* Q*LFPDPAKPKEV+TS+GSS A CI PLLYFPR T Subject 2796 GSPSSTKVLGWNTEITRSI*PGGSSPISSMTMALHPKSSINATSKVTTLCFLEIFPTQSSLSTFLGLIIKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRST 3152
Range 3: 2796 to 3146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 73/117(62%) | 0/117(0%) | Plus/Plus |
Query 1 CSSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYHSSFVR 351 C+S +VQ*R+DA G TN* D LWFRRVRKKSL SNHTPEL* EN Y+S E +QG LGR+DL EAQGG+L*SR+Y * + GHS+R DR APTRL SG L + P H S R Subject 2796 CASGKVQ*RKDARG*IG*TN*SIDFLWFRRVRKKSLVSNHTPEL*CRENFDYKS*ESAQGRLGRKDL*EAQGGDL*SRIYG*FRM*GHSHR*DRTAPTRLY*SGDLSIPPKHLSTTR 3146
Range 4: 2797 to 3111 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.6 bits(307) | 0.0 | 65/105(62%) | 0/105(0%) | Minus/Minus |
Query 2 DDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEKN 316 D QI++ WEQ YL+ +YGL +++I K DFKG+HLVLL DL PV+LE+ P T N FL+ TT EYGLTPVTFSGPGETKG QY +WF+Q R+HL+FIVL +K+ Subject 2797 DHQINITWWEQSYLIDDYGLTSEIIHKCDFKGHHLVLLRDLSYPVVLEHFPRTYNQSFLDITTPEYGLTPVTFSGPGETKGSQYFSWFIQFSRVHLSFIVLSQKH 3111
Range 5: 2801 to 3124 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 68/108(63%) | 0/108(0%) | Plus/Plus |
Query 6 FSGSTIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIWSSRSFT 329 F STIK RC W NQL+Y* PLVSPGPEKVTGVKPYS VV RK *L V G+ SR TG RS RSTRW*PLKS L M RP* R* CSH IW S+ T Subject 2801 FWESTIKERCTRLNWMNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKL*L*VLGKCSRTTG*ERSLRSTRW*PLKSHLWMISDVRP*SSMR*DCSHQVILIW*SQYST 3124
Grapevine virus A isolate P163 1 putative replicase, movement protein, capsid protein, and RNA binding protein genes, complete cds; and unknown gene
Sequence ID: DQ855088.1 Length: 7342 Number of Matches: 7
Range 1: 2797 to 3162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.5 bits(584) | 0.0 | 111/122(91%) | 0/122(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 VLLGKYNKGKMH+A LEEP EVLTSFGFAGSGKSHW QTIL+SC+VEKTLVISPRKVLKDDW GKISKKHKVVTFEVAF DDFGCKAIVIDEIGLLPPGY+DLVISVFHP TLVLLGDP QS Subject 2797 VLLGKYNKGKMHAAELEEPTEVLTSFGFAGSGKSHWCQTILRSCDVEKTLVISPRKVLKDDWAGKISKKHKVVTFEVAFMDDFGCKAIVIDEIGLLPPGYIDLVISVFHPNTLVLLGDPLQS 3162
Range 2: 2796 to 3152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
214.6 bits(462) | 0.0 | 95/119(80%) | 0/119(0%) | Minus/Minus |
Query 1 GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT 357 GSP+ T+V G TEMTRS *PGGS+PISS+TMAL PKSS+ ATSKVTTLCFFEIFP QSSL TFLGLIT VFSTSQL SMV* Q*LFPDPAKPKEV+TS+GSS A CI PLLYFPR T Subject 2796 GSPSSTKVFGWNTEMTRSM*PGGSSPISSMTMALHPKSSMNATSKVTTLCFFEIFPAQSSLSTFLGLITKVFSTSQLRSMV*HQ*LFPDPAKPKEVNTSVGSSNSAACIFPLLYFPRST 3152
Range 3: 2796 to 3149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 75/118(64%) | 0/118(0%) | Plus/Plus |
Query 1 CSSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYHSSFVR* 354 C+S +VQ R+DA GGTN* D LWFRRVRKKSL SNHTPEL* EN+ Y+S EG+QG*LGREDLKEAQG +L*SR++ L + GH +RRDR APT L SGHL + H S R* Subject 2796 CTSGKVQQREDACG*IGGTN*SIDFLWFRRVRKKSLVSNHTPEL*CRENLGYKS*EGAQG*LGREDLKEAQGSDL*SRVHGRLRM*GHCHRRDRTAPTWLH*SGHLSVPSKHLSTTR* 3149
Range 4: 2798 to 3115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.7 bits(303) | 0.0 | 70/106(66%) | 0/106(0%) | Plus/Plus |
Query 3 FFSGSTIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIWSSR 320 +F ST K RC+ WRNQL+Y* PLVSPGPEKVTGVKPYS VV RK L V GR SRMTG GRSQRSTR *PLKS T RP TR* CSH T IWSS+ Subject 2798 YFWESTTKGRCMRLNWRNQLKY*LPLVSPGPEKVTGVKPYSGVVMSRKPWL*VLGRCSRMTGQGRSQRSTR**PLKSRSWTTSDVRPLSSTR*DCSHLVTLIWSSQ 3115
Range 5: 2800 to 3111 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 70/104(67%) | 0/104(0%) | Minus/Minus |
Query 5 DDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEK 316 DDQI+V WEQ YLV + GL ++V+ + DFKG++LVLL*DLP PVILE+LP T N FL+ TT EYGLTPVTFSGPGETKG QY +WFLQ RMHL F+VL +K Subject 2800 DDQINVTRWEQSYLVDDNGLTSEVVHERDFKGHYLVLL*DLPCPVILEHLPRTYNQGFLDITTPEYGLTPVTFSGPGETKGSQYFSWFLQFSRMHLPFVVLSQK 3111
Grapevine virus A isolate I327 5, complete genome
Sequence ID: KC962564.1 Length: 7349 Number of Matches: 5
Range 1: 2788 to 3153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.4 bits(527) | 0.0 | 100/122(82%) | 0/122(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 VLLGKYNKGKMH+ +EEP EVLT+FGFAGSGKSHW QTIL+ C VEK LVISPRKVLKDDWV KISKKHKVVTFEVAF DD+GCK IVIDEIGLLPPGY+DLVI+ P TLVLLGDP QS Subject 2788 VLLGKYNKGKMHTGEIEEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKVLVISPRKVLKDDWVAKISKKHKVVTFEVAFMDDYGCKDIVIDEIGLLPPGYIDLVIAAHQPRTLVLLGDPLQS 3153
Range 2: 2787 to 3143 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 82/119(69%) | 0/119(0%) | Minus/Minus |
Query 1 GSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT 357 GSP TRV G* +TRS PGG +PISSIT++LQP SS+KATS VTTLCF +I TQSSL TFLGLIT+ FST Q SMV* Q*LFPDPA PK VSTS GSS CILPLLY P T Subject 2787 GSPRSTRVRG*CAAITRSMYPGGRSPISSITISLQP*SSMKATSNVTTLCFLDILATQSSLSTFLGLITSTFSTEQCLSMV*HQ*LFPDPANPKAVSTSFGSSISPVCILPLLYLPSST 3143
Range 3: 2791 to 3102 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 44/104(42%) | 0/104(0%) | Minus/Minus |
Query 5 DDQIHVAGWEQPYLVYNYGLAAKVISKGDFKGYHXXXXXXXXXXVILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEK 316 D QI+V GW + L+Y+ L V+ +GD + YH V L L +P+I E+ P D FL+ T +YGLTPVTF E K +L WFL +HLA +V E+ Subject 2791 DHQIYVPGW*ESNLIYHDILTTVVVHEGDLECYHFVFLGYLGNPIIFEHFPGADYEHFLHGTVFKYGLTPVTFP*SCEPKSC*HLLWFLYFACVHLALVVFAEQ 3102
Range 4: 2790 to 3122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 45/111(41%) | 0/111(0%) | Plus/Plus |
Query 4 SSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGHLGLSPYH 336 ++R++Q QDA + GT G + W RR+R+KSL SNHT L E+ Q +E +Q *LG +D++E Q GN+ RL+ L L G+ R D TR+ SG S H Subject 2790 TARQIQQGQDAHRRNRGTKGGANSFWVRRIREKSLVSNHT*TLFRGESARNQPQESAQR*LGCQDIQETQSGNIRGRLHGRLRL*GYRDR*DWTPTTRVHRSGDRCASATH 3122
Range 5: 2789 to 3097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.0 bits(153) | 0.0 | 44/103(43%) | 0/103(0%) | Plus/Plus |
Query 3 FFSGSTIKARCILPVWRNQLRY*PPLVSPGPEKVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GCSHPATWIW 311 + S +T +ARC RNQ R * L S KVTGVKPY V RK S G+ S+M G R R+T+W* +SP T R * R HP T IW Subject 2789 YCSANTTRARCTQAK*RNQRRC*QLLGSQDQGKVTGVKPYLNTVPWRKCS*SAPGKCSKMIGLPRYPRNTKW*HSRSPSWTTTVVRIS**MRLDSYHPGT*IW 3097
Grapevine virus A isolate PA3, complete genome
Sequence ID: AF007415.2 Length: 7351 Number of Matches: 7
Range 1: 2787 to 3152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
242.1 bits(522) | 0.0 | 98/122(80%) | 0/122(0%) | Plus/Plus |
Query 2 VLLGKYNKGKMHSASLEEPIEVLTSFGFAGSGKSHWSQTILQSCEVEKTLVISPRKVLKDDWVGKISKKHKVVTFEVAFTDDFGCKAIVIDEIGLLPPGYVDLVISVFHPTTLVLLGDPPQS 367 VLLGKYNKGKMHS ++EP EVLT+FGFAGSGKSHW QTIL+ C VEK LVISPRKVLKDDW KISK+HKVVTFEVAF DD+GCK +VIDEIGLLPPGY+DLVI+V P TLVLLGDP QS Subject 2787 VLLGKYNKGKMHSEGIDEPKEVLTAFGFAGSGKSHWCQTILKHCSVEKALVISPRKVLKDDWTSKISKRHKVVTFEVAFMDDYGCKDVVIDEIGLLPPGYIDLVIAVHRPRTLVLLGDPLQS 3152
Range 2: 2786 to 3148 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
186.6 bits(401) | 0.0 | 86/121(71%) | 0/121(0%) | Minus/Minus |
Query 1 CGGSPNKTRVVG*KTEMTRST*PGGSNPISSITMALQPKSSVKATSKVTTLCFFEIFPTQSSLRTFLGLITNVFSTSQLWSMV*LQ*LFPDPAKPKEVSTSIGSSKLAECILPLLYFPRRT 363 C GSP T V G T MT+S PGGSNPISSIT +LQP SS+KATS VTTLC FEIF QSSL TF GLIT FST Q SMV* Q*LFP+PA PK VSTS GSS +ECILPLLYFPR T Subject 2786 CSGSPRSTSVRGLCTAMTKSMYPGGSNPISSITTSLQP*SSMKATSNVTTLCLFEIFEVQSSLSTFRGLITRAFSTEQCLSMV*HQ*LFPEPANPKAVSTSFGSSMPSECILPLLYFPRST 3148
Range 3: 2789 to 3100 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 48/104(46%) | 0/104(0%) | Plus/Plus |
Query 4 SSREVQ*RQDAFCQFGGTN*GTDLLWFRRVRKKSLESNHTPEL*S*ENISYQSKEGSQG*LGREDLKEAQGGNL*SRLY**LWLQGHSYRRDRVAPTRLRGSGH 315 +S +VQ*RQDA T G R R+KSL SNHT L E+ YQ EG+Q L +DLKEAQ G++ + *LWLQG YRRDRVA + + H Subject 2789 ASGKVQ*RQDALRGHR*TKGGAHRFRICRFREKSLVSNHT*TLFRRESPRYQPTEGTQRRLDLKDLKEAQSGDIRGGFHG*LWLQGCGYRRDRVATSWVHRFSH 3100
Range 4: 2787 to 2966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 29/60(48%) | 0/60(0%) | Minus/Minus |
Query 2 ILENLPWTDN*CFLNFTTLEYGLTPVTFSGPGETKGGQYLNWFLQTGRMHLAFIVLPEKN 181 + E LPW DN FL T +YGLTPVTF +++ G++L WF+ +HLAFIVL +K+ Subject 2787 VFEYLPWADNEGFLYGTVFKYGLTPVTFP*TCKSESGEHLLWFIYAL*VHLAFIVLSQKH 2966
Range 5: 2992 to 3072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 13/27(48%) | 0/27(0%) | Minus/Minus |
Query 207 ATLSRL*LWPCSQSHQ*RRLQRLPPCA 287 AT SR * PCS +H *+ + P CA Subject 2992 ATRSRR*PHPCSHNHP*KPPRMSPLCA 3072
Range 6: 2884 to 3072 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 34/63(54%) | 0/63(0%) | Plus/Plus |
Query 99 KVTGVKPYSRVVKLRKH*LSVQGRFSRMTGSGRSQRSTRW*PLKSPLLMTLAARP*L*TR*GC 287 KVTGVKPY V RK LS GR+S+ TG RSQR T+W* + M +AAR L TR GC Subject 2884 KVTGVKPYLNTVP*RKPSLSAHGRYSKTTGPQRSQRGTKW*HSRWLSWMIMAARMWLSTRSGC 3072