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Queries

Nucleotide Sequence (490 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
49
98
147
196
245
294
343
392
441
490

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome

Sequence ID: KX958435.1 Length: 8743 Number of Matches: 6

Range 1: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
387.8 bits(840) 0.0 158/163(97%) 0/163(0%) Minus/Plus
Query        2  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH  490
                IKTKTCRFGANTCKYLQSFGFD++SDRVDAVV+GSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*DHNSINHWLGHWIGSTLLEKVE AIFR*QYSPVSTRRALQGRH
Subject   6917  IKTKTCRFGANTCKYLQSFGFDIYSDRVDAVVVGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DHNSINHWLGHWIGSTLLEKVEFAIFR*QYSPVSTRRALQGRH  7405

Range 2: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
373.1 bits(808) 0.0 151/163(93%) 0/163(0%) Plus/Minus
Query        2  VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY  490
                VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNG+MVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*R+NVK *TPHL GQLEVGIVRNC*IYGLLSKAN+NSLNIQFKRRP+N+ +HSIT+NIEAKRLEVLAGVSTKPAS  LY
Subject   6917  VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGVMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RHNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANKNSLNIQFKRRPHNHCVHSITINIEAKRLEVLAGVSTKPASFSLY  7405

Range 3: 6919 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
350.2 bits(758) 0.0 157/162(97%) 0/162(0%) Plus/Minus
Query        3  CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF  488
                CRPCNALRVETGEYCHLNMA+STFSRSVEPIQCPSQWLMELWS*PSWQVAGKAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQ+RTPSTSSSKGDP TTASTLSL* SKPKDWRYLQVLAPNLQVLVF
Subject   6919  CRPCNALRVETGEYCHLNMANSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASHCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQIRTPSTSSSKGDPTTTASTLSL*ISKPKDWRYLQVLAPNLQVLVF  7404

Range 4: 6918 to 7406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.9 bits(742) 0.0 148/163(91%) 0/163(0%) Plus/Minus
Query        1  CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL  489
                CAVPVMPSVWKLVNIVT*IWQ+RLSQEV*NQSNAQANG*W+YGLSPVGRLLERHL ALLSVCFDALLLRRRTNAYLLKLGP*TSIT QR* LNPAP RAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKAT     PLYHY++RSQKIGGTCRC*HQTCK  SL
Subject   6918  CAVPVMPSVWKLVNIVT*IWQIRLSQEV*NQSNAQANG*WSYGLSPVGRLLERHLTALLSVCFDALLLRRRTNAYLLKLGP*TSITSQR*MLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATPQPLRPLYHYKYRSQKIGGTCRC*HQTCKF*SL  7406

Range 5: 6919 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
334.6 bits(724) 0.0 146/162(90%) 0/162(0%) Minus/Plus
Query        3  KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA  488
                KD +LQVWC*HLQVPPIFWLR  ***SG     VAF*TGC*GSS+LLWKGGRRSSSCAQFRLQVAL GAGFN+*RC+VIEV*GPNFRR*ALVLRRSNKASKQTDNNA RCLSSNLPTGLRP* H*PLAWALDWFYTS*ESR CHIQVTIFTSFHTEGITGTA
Subject   6919  KD*NLQVWC*HLQVPPIFWLRYL***SGRSGCGVAF*TGC*GSSYLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCDVIEV*GPNFRR*ALVLRRSNKASKQTDNNAVRCLSSNLPTGLRP*LH*PLAWALDWFYTS*ESRICHIQVTIFTSFHTEGITGTA  7404

Range 6: 6918 to 7406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
315.4 bits(682) 0.0 152/163(93%) 0/163(0%) Minus/Plus
Query        1  *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  489
                *R +LAGLVLTPASTSNLLAS+FIVIEW + L GRLLNWMLREF FALERRP*I*QLRTIPTSSCP RCGVQ LTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT
Subject   6918  *RLKLAGLVLTPASTSNLLASIFIVIEWTQWLWGRLLNWMLREFLFALERRP*I*QLRTIPTSSCPARCGVQHLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  7406

Grapevine rupestris stem pitting associated virus isolate VF1, partial genome

Sequence ID: KT948710.1 Length: 8716 Number of Matches: 6

Range 1: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
380.9 bits(825) 0.0 157/163(96%) 0/163(0%) Minus/Plus
Query        2  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH  490
                IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*DHNSINHW GHWIGSTLLEKV+ AIFR*Q+SPVSTR ALQGRH
Subject   6917  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DHNSINHWPGHWIGSTLLEKVKFAIFR*QHSPVSTRGALQGRH  7405

Range 2: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
362.6 bits(785) 0.0 148/163(91%) 0/163(0%) Plus/Minus
Query        2  VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY  490
                VPSL*CPPCGNW*+LSPEYGKFDFLKKCRTNPMP+PMVNG+MVLAQLAGCWKGISLHYY FASMPCCC+VEPML+F*SWVPRLQ*R NVK *TPHL GQLEV IVRNC*IY LLSKANENSLNIQFK RPYNN +HSITMNIEAKRLEVLAGVSTKPAS GLY
Subject   6917  VPSL*CPPCGNW*MLSPEYGKFDFLKKCRTNPMPRPMVNGVMVLAQLAGCWKGISLHYY*FASMPCCCNVEPMLVF*SWVPRLQ*RNNVKC*TPHLAGQLEVRIVRNC*IYSLLSKANENSLNIQFKWRPYNNCVHSITMNIEAKRLEVLAGVSTKPASFGLY  7405

Range 3: 6919 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 155/162(96%) 0/162(0%) Plus/Minus
Query        3  CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF  488
                CRPCNA RVETGE CHLNMA+ TFSRSVEPIQCP QWLMELWS*PSWQVAGKAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF
Subject   6919  CRPCNAPRVETGECCHLNMANLTFSRSVEPIQCPGQWLMELWS*PSWQVAGKASHCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF  7404

Range 4: 6918 to 7406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
339.7 bits(735) 0.0 145/163(89%) 0/163(0%) Plus/Minus
Query        1  CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL  489
                CAVPVMP VWKLVN+VT*IWQ+ LSQEV*NQSNAQANG*W+YGLSPVGRLLERHL ALL VCFDALLL+RRTNA LLKLGP*TSIT QR* LNPAP RAT*S+NCAQLLDL+PPFQSK*ELPQHPVQ ATL*Q  PLYHYEHRSQKIGGTCRC*HQTCK WSL
Subject   6918  CAVPVMPPVWKLVNVVT*IWQI*LSQEV*NQSNAQANG*WSYGLSPVGRLLERHLTALLLVCFDALLLQRRTNACLLKLGP*TSIT*QR*MLNPAPRRAT*SQNCAQLLDLQPPFQSK*ELPQHPVQMATL*QLRPLYHYEHRSQKIGGTCRC*HQTCKFWSL  7406

Range 5: 6919 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
334.6 bits(724) 0.0 144/162(89%) 0/162(0%) Minus/Plus
Query        3  KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA  488
                KDQ+LQVWC*HLQVPPIFWLRCS***SG  CYRVA *TGC*GSSHLLWKGG RSSSCAQF LQVAL GAGFN+*RC VIEV*GPNFRR ALVLR SNKASKQT+NNA RCLSSNLPTGLRP* H*PLAWALDWFYTS*ES+ CHIQVT FTSFHT GITGTA
Subject   6919  KDQNLQVWC*HLQVPPIFWLRCS***SGRSCYRVAI*TGC*GSSHLLWKGGCRSSSCAQF*LQVALRGAGFNI*RCYVIEV*GPNFRRQALVLRCSNKASKQTNNNAVRCLSSNLPTGLRP*LH*PLAWALDWFYTS*ESQICHIQVTTFTSFHTGGITGTA  7404

Range 6: 6918 to 7406 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
309.9 bits(670) 0.0 151/163(93%) 0/163(0%) Minus/Plus
Query        1  *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  489
                *RP+LAGLVLTPASTSNLLASMFIVIEW +LL*GR LNWMLREFSFALERR *I*QLRTI TSSCP RCGVQ LTL RY*SLGTQLQK SIGST QQQGIEAN***CSEMPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT
Subject   6918  *RPKLAGLVLTPASTSNLLASMFIVIEWTQLL*GRHLNWMLREFSFALERRL*I*QLRTILTSSCPARCGVQHLTLLRY*SLGTQLQKTSIGSTLQQQGIEAN***CSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  7406

Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome

Sequence ID: KX274274.1 Length: 8725 Number of Matches: 6

Range 1: 6916 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
377.3 bits(817) 0.0 154/163(94%) 0/163(0%) Minus/Plus
Query        2  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH  490
                IKTKTCRFGANTC+YLQSFGF+++SDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*D+NSINHWLGHWIGSTLLEKV+ AIFR*QYSPVSTR ALQGRH
Subject   6916  IKTKTCRFGANTCRYLQSFGFEIYSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DYNSINHWLGHWIGSTLLEKVKFAIFR*QYSPVSTRGALQGRH  7404

Range 2: 6916 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
366.7 bits(794) 0.0 149/163(91%) 0/163(0%) Plus/Minus
Query        2  VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY  490
                VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNG++VLAQLAGCWKGI LHYYQFASMPCCC+VEPMLIF*SWVPRLQ*R+NVK *TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFK RPYNN +HSIT++ EAKRLEV AGVSTKPAS GLY
Subject   6916  VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGVIVLAQLAGCWKGILLHYYQFASMPCCCNVEPMLIF*SWVPRLQ*RHNVKC*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKWRPYNNCVHSITIDFEAKRLEVPAGVSTKPASFGLY  7404

Range 3: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
346.1 bits(749) 0.0 148/163(91%) 0/163(0%) Plus/Minus
Query        1  CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL  489
                CAVPVMP VWKLVNIVT*IWQ+ LSQEV*NQSNAQANG*W+Y LSPVGRLLERHL ALLSVCFDALLL+RRTNAYLLKLGP*TSIT QR* LNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQ ATL*Q  PLYHY  RSQKIGGTCRC*HQTCK WSL
Subject   6917  CAVPVMPPVWKLVNIVT*IWQI*LSQEV*NQSNAQANG*WSYSLSPVGRLLERHLTALLSVCFDALLLQRRTNAYLLKLGP*TSITSQR*MLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQMATL*QLRPLYHYRFRSQKIGGTCRC*HQTCKFWSL  7405

Range 4: 6918 to 7403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
340.1 bits(736) 0.0 147/162(91%) 0/162(0%) Minus/Plus
Query        3  KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA  488
                KDQ+LQVWC*HLQVPPIFWLR  ***SG  CYRVA *TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFN+*RC+VIEV*GPNFRR*ALVLR SNKASKQTDNNA RCLSSNLPTGLR * H*PLAWALDWFYTS*ES+ CHIQVTIFTSFHT GITGTA
Subject   6918  KDQNLQVWC*HLQVPPIFWLRNL***SGRSCYRVAI*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNI*RCDVIEV*GPNFRR*ALVLRCSNKASKQTDNNAVRCLSSNLPTGLRL*LH*PLAWALDWFYTS*ESQICHIQVTIFTSFHTGGITGTA  7403

Range 5: 6918 to 7403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
338.3 bits(732) 0.0 155/162(96%) 0/162(0%) Plus/Minus
Query        3  CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF  488
                CRPCNA RVETGEYCHLNMA+ TFSRSVEPIQCPSQWLMEL S*PSWQVAGKAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL* SKPKDWRYLQVLAPNLQVLVF
Subject   6918  CRPCNAPRVETGEYCHLNMANLTFSRSVEPIQCPSQWLMEL*S*PSWQVAGKASYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*ISKPKDWRYLQVLAPNLQVLVF  7403

Range 6: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
315.4 bits(682) 0.0 152/163(93%) 0/163(0%) Minus/Plus
Query        1  *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  489
                *RP+LAGLVLTPA TSNLLAS  IVIEW +LL*GR LNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQ LTL*RY*SLGTQLQKISIGST QQQGIEAN***CS+MPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT
Subject   6917  *RPKLAGLVLTPAGTSNLLASKSIVIEWTQLL*GRHLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQHLTL*RY*SLGTQLQKISIGSTLQQQGIEAN***CSKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  7405

Grapevine rupestris stem pitting associated virus isolate SK30, complete genome

Sequence ID: KX274277.1 Length: 8724 Number of Matches: 6

Range 1: 6916 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
368.6 bits(798) 0.0 150/163(92%) 0/163(0%) Plus/Minus
Query        2  VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY  490
                VPSL*CPPCGNW*ILSPEYGK DFLKKCRTNPMPKP+VNG+MVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF SWVPRLQ* YNVK *TPHL GQLEVGIVRNC*IYGLLSKANENSLNIQFK RPYNN +HSIT+NI+AKRLEVLAGVSTKPAS GLY
Subject   6916  VPSL*CPPCGNW*ILSPEYGKLDFLKKCRTNPMPKPIVNGVMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIFWSWVPRLQ*CYNVKC*TPHLAGQLEVGIVRNC*IYGLLSKANENSLNIQFKWRPYNNCVHSITINIKAKRLEVLAGVSTKPASFGLY  7404

Range 2: 6916 to 7404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
360.3 bits(780) 0.0 153/163(94%) 0/163(0%) Minus/Plus
Query        2  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH  490
                IKTKTCRFGANTCKYLQSFGFDV+SDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTF+VVTLLKSRDPT EDKHWFYVAATRHRSKLIIMQ DAFPATCQLG*DHNSIN+ LGH IGSTLLEKV  AIFR*QYSPVSTRRAL GRH
Subject   6916  IKTKTCRFGANTCKYLQSFGFDVYSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTPEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DHNSINYRLGHRIGSTLLEKV*FAIFR*QYSPVSTRRAL*GRH  7404

Range 3: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
343.3 bits(743) 0.0 143/163(88%) 0/163(0%) Plus/Minus
Query        1  CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL  489
                CAVP+MPSVWKLVNIVT*IWQ+RLSQEV*NQS+AQA+ *W+YGLSP+GRLLERHL ALLS+CFDALLLRRRTNAYLL+LGP*TSI LQR  LNPAP RAT*SRNCAQLLDLRPPFQSK*ELPQHPVQ ATL*Q  PLYHY+H+SQKIGGTCRC*HQTCK WSL
Subject   6917  CAVPIMPSVWKLVNIVT*IWQIRLSQEV*NQSDAQADS*WSYGLSPIGRLLERHLTALLSICFDALLLRRRTNAYLLELGP*TSIMLQRQMLNPAPRRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQMATL*QLRPLYHYKHQSQKIGGTCRC*HQTCKFWSL  7405

Range 4: 6918 to 7403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
329.1 bits(712) 0.0 142/162(88%) 0/162(0%) Minus/Plus
Query        3  KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA  488
                KDQ+LQVWC*HLQVPPIFWL C ***SG  CYRVA *TGC*GSSHLLWKGGRRSSSCAQFRLQVAL GAGFN+*RCN+IEV*GPN RR*ALVLRRSNKASKQ DNNA RCLSSNLP GLRP* H*  AWA DWFYTS*ES  CHIQVTIFTSFHTEGI GTA
Subject   6918  KDQNLQVWC*HLQVPPIFWL*CL***SGRSCYRVAI*TGC*GSSHLLWKGGRRSSSCAQFRLQVALRGAGFNI*RCNIIEV*GPNSRR*ALVLRRSNKASKQIDNNAVRCLSSNLPIGLRP*LH*LSAWASDWFYTS*ESLICHIQVTIFTSFHTEGIIGTA  7403

Range 5: 6918 to 7403 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
324.1 bits(701) 0.0 150/162(93%) 0/162(0%) Plus/Minus
Query        3  CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF  488
                CRP NALRVETGEYCHLNMA+ TFSRSVEPI+CPS+ LMELWS*P+WQVAGKAS CIII+LLRCLVAAT*NQCLSS VGSLDFNNVTT NVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF
Subject   6918  CRPYNALRVETGEYCHLNMAN*TFSRSVEPIRCPSR*LMELWS*PNWQVAGKASHCIIINLLRCLVAAT*NQCLSSGVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF  7403

Range 6: 6917 to 7405 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
321.4 bits(695) 0.0 154/163(94%) 0/163(0%) Minus/Plus
Query        1  *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  489
                *RP+LAGLVLTPASTSNLLA MFIVIEW +LL*GR LNWMLREFSFALERRP*I*QLRTIPTSSCP RCGVQ LTL* Y*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT
Subject   6917  *RPKLAGLVLTPASTSNLLALMFIVIEWTQLL*GRHLNWMLREFSFALERRP*I*QLRTIPTSSCPARCGVQHLTL*HY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  7405

Grapevine rupestris stem pitting associated virus isolate ML replicase polyprotein gene, partial cds; triple gene block protein 1 (TGB1), triple gene block protein 2 (TGB2), and triple gene block protein 3 (TGB3) genes, complete cds; and capsid protein gene, partial cds

Sequence ID: KU324634.1 Length: 2653 Number of Matches: 6

Range 1: 1213 to 1701 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
363.5 bits(787) 0.0 149/163(91%) 0/163(0%) Minus/Plus
Query        2  IKTKTCRFGANTCKYLQSFGFDVHSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQRDAFPATCQLG*DHNSINHWLGHWIGSTLLEKVELAIFR*QYSPVSTRRALQGRH  490
                IKTKTCRFGANTCKYLQSFGFDV+SDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ DAF ATC+LG*D+NS NHW GHW+  T LEKV+ AIFR*QYSPV TRRALQGRH
Subject   1213  IKTKTCRFGANTCKYLQSFGFDVYSDRVDAVVIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFSATCRLG*DNNSTNHWFGHWVSPTFLEKVKSAIFR*QYSPVPTRRALQGRH  1701

Range 2: 1213 to 1701 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
334.2 bits(723) 0.0 138/163(85%) 0/163(0%) Plus/Minus
Query        2  VPSL*CPPCGNW*ILSPEYGKFDFLKKCRTNPMPKPMVNGIMVLAQLAGCWKGISLHYYQFASMPCCCDVEPMLIF*SWVPRLQ*RYNVKR*TPHLTGQLEVGIVRNC*IYGLLSKANENSLNIQFKRRPYNNRIHSITMNIEAKRLEVLAGVSTKPASLGLY  490
                VPSL*CPPCGNW*ILSPEYG+FDFLKKCRTNPMPKPMV+G++VLAQ AGC KGI LHYYQFASMPCCC+VEPMLIF SWVP LQ*R++VK *TPH   QLEVGIV NC IYGLLSKANENSLNI+FK RPYN+ ++SIT+NIEAKRLEVLAGVSTKPASLGLY
Subject   1213  VPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVSGVIVLAQSAGC*KGILLHYYQFASMPCCCNVEPMLIFRSWVPGLQ*RHDVKC*TPHFARQLEVGIVCNCKIYGLLSKANENSLNIKFKWRPYNDCVYSITINIEAKRLEVLAGVSTKPASLGLY  1701

Range 3: 1215 to 1700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
314.0 bits(679) 0.0 148/162(91%) 0/162(0%) Plus/Minus
Query        3  CRPCNALRVETGEYCHLNMASSTFSRSVEPIQCPSQWLMELWS*PSWQVAGKASRCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSKGDPIXXXXXXXXXXXKPKDWRYLQVLAPNLQVLVF  488
                CRPCNALRV TGEYCHLNMA  TFSR+V   QCP+QWL+EL S*PS QVA KAS CIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS GDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF
Subject   1215  CRPCNALRVGTGEYCHLNMADLTFSRNVGLTQCPNQWLVELLS*PSRQVAEKASYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPITTASTLSL*TSKPKDWRYLQVLAPNLQVLVF  1700

Range 4: 1214 to 1702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
307.6 bits(665) 0.0 133/163(82%) 0/163(0%) Plus/Minus
Query        1  CAVPVMPSVWKLVNIVT*IWQVRLSQEV*NQSNAQANG*WNYGLSPVGRLLERHLAALLSVCFDALLLRRRTNAYLLKLGP*TSITLQR*TLNPAPHRAT*SRNCAQLLDLRPPFQSK*ELPQHPVQKATL*QPHPLYHYEHRSQKIGGTCRC*HQTCKSWSL  489
                CAVPVMPSVW+LVNIVT*IWQ+ LSQE+*+  NAQ NG*W+Y LSPVGRLL+RHL ALLSVCFDALLL+RRTNAYL KLGP TSIT +R* LNPA  +AT*SRNC QL DLRPPFQSK*ELPQH VQ ATL*+   LYHY+HRSQKIGGTCRC*HQTCKSWSL
Subject   1214  CAVPVMPSVWELVNIVT*IWQI*LSQEM*D*PNAQTNG*WSYCLSPVGRLLKRHLTALLSVCFDALLLQRRTNAYLQKLGPWTSITSRR*MLNPALRKAT*SRNCVQLQDLRPPFQSK*ELPQHQVQMATL*RLRLLYHYKHRSQKIGGTCRC*HQTCKSWSL  1702

Range 5: 1215 to 1700 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
292.5 bits(632) 0.0 133/162(82%) 0/162(0%) Minus/Plus
Query        3  KDQDLQVWC*HLQVPPIFWLRCS***SGCGCYRVAF*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNV*RCNVIEV*GPNFRR*ALVLRRSNKASKQTDNNAARCLSSNLPTGLRP*FH*PLAWALDWFYTS*ESRTCHIQVTIFTSFHTEGITGTA  488
                KDQDLQVWC*HLQVPPIFWLRC ***S    YRVA *T C*GSSHLLWKGGRRS SC QFRLQVAL  AGFN+*R +VIEV GPNF R*ALVLR SNKASKQTDNNA RCL SNLPTGLR * H*PL WAL   Y S*ES+ CHIQVTIFTS HTEGITGTA
Subject   1215  KDQDLQVWC*HLQVPPIFWLRCL***SRRSRYRVAI*T*C*GSSHLLWKGGRRSCSCTQFRLQVALRSAGFNI*RRDVIEVQGPNF*R*ALVLRCSNKASKQTDNNAVRCLFSNLPTGLRQ*LH*PLVWALG*SYIS*ESQICHIQVTIFTSSHTEGITGTA  1700

Range 6: 1214 to 1702 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
285.6 bits(617) 0.0 144/163(88%) 0/163(0%) Minus/Plus
Query        1  *RPRLAGLVLTPASTSNLLASMFIVIEWMRLL*GRLLNWMLREFSFALERRP*I*QLRTIPTSSCPVRCGVQRLTL*RY*SLGTQLQKISIGSTSQQQGIEAN***CSEMPFQQPANWAKTXXXXXXXXXXXXXLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  489
                *RPRLAGLVLTPASTSNLLASMFIVIE  + L*GR LN MLREFSFALERRP*I QL TIPTSSC  +CGVQ LT *RY*S GTQL KISIGST QQQGIEAN***CS+MPFQQPA+WAKTI PLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT
Subject   1214  *RPRLAGLVLTPASTSNLLASMFIVIE*TQSL*GRHLNLMLREFSFALERRP*ILQLHTIPTSSCLAKCGVQHLTS*RY*SPGTQLLKISIGSTLQQQGIEAN***CSKMPFQQPADWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGT  1702

Nucleotide Sequence (114 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
12
24
36
48
60
72
84
96
108
114

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 5

Range 1: 782 to 892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 37/37(100%) 0/37(0%) Plus/Minus
Query        2  EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  112
                EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ
Subject    782  EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  892

Range 2: 782 to 892 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.5 bits(178) 0.0 35/37(95%) 0/37(0%) Minus/Plus
Query        2  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL  112
                LFEAID*ALS+WHGVIIMNNLVKALSTFEFVG+YSVL
Subject    782  LFEAID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVL  892

Range 3: 780 to 893 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.5 bits(165) 0.0 36/38(95%) 0/38(0%) Plus/Minus
Query        1  *ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT  114
                *ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTT
Subject    780  *ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTT  893

Range 4: 781 to 891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 35/37(95%) 0/37(0%) Plus/Minus
Query        3  STL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNN  113
                STL* PTNSNVDKALTKLFIIITPCQ LKA*SIASNN
Subject    781  STL*IPTNSNVDKALTKLFIIITPCQILKA*SIASNN  891

Range 5: 781 to 891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 35/37(95%) 0/37(0%) Minus/Plus
Query        3  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA  113
                VV*SYRLGLK LAWCDYYE*LS*SFVYV*VCG L*RA
Subject    781  VV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RA  891

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5

Range 1: 6526 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 37/37(100%) 0/37(0%) Plus/Minus
Query        2  EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  112
                EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ
Subject   6526  EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  6636

Range 2: 6525 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 37/37(100%) 0/37(0%) Minus/Plus
Query        3  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA  113
                VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA
Subject   6525  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA  6635

Range 3: 6526 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 37/37(100%) 0/37(0%) Minus/Plus
Query        2  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL  112
                LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL
Subject   6526  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL  6636

Range 4: 6524 to 6637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 38/38(100%) 0/38(0%) Plus/Minus
Query        1  *ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT  114
                *ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT
Subject   6524  *ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT  6637

Range 5: 6525 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 37/37(100%) 0/37(0%) Plus/Minus
Query        3  STL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNN  113
                STL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNN
Subject   6525  STL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNN  6635

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 5

Range 1: 6526 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
83.1 bits(175) 0.0 35/37(95%) 0/37(0%) Plus/Minus
Query        2  EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  112
                EHAINTHKLKRRQSFN*VIHNN  MPNT*GLIYSFKQ
Subject   6526  EHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQ  6636

Range 2: 6526 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.6 bits(163) 0.0 35/37(95%) 0/37(0%) Minus/Plus
Query        2  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL  112
                LFEAID*ALSVWH  IIMNNLVKALSTFEFVGVYSVL
Subject   6526  LFEAID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVL  6636

Range 3: 6525 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.2 bits(160) 0.0 34/37(92%) 0/37(0%) Minus/Plus
Query        3  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RA  113
                +V*SYRLGLKCLA  DYYE*LS*SFVYV*VCGCL*RA
Subject   6525  IV*SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RA  6635

Range 4: 6527 to 6637 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 35/37(95%) 0/37(0%) Plus/Minus
Query        1  *ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQT  111
                *ARYKHPQTQT*TKL*LSYS**S++AKHLRPNL*LQT
Subject   6527  *ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL*LQT  6637

Range 5: 6525 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 35/37(95%) 0/37(0%) Plus/Minus
Query        3  STL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASNN  113
                STL*TPTNSNVDKALTKLFIII  CQTLKA*SIASNN
Subject   6525  STL*TPTNSNVDKALTKLFIII**CQTLKA*SIASNN  6635

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 3

Range 1: 6526 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.8 bits(157) 0.0 32/37(86%) 0/37(0%) Minus/Plus
Query        2  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL  112
                LFEAID*ALS+WH + IMNNLVKALSTFEFVGV+SVL
Subject   6526  LFEAID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVL  6636

Range 2: 6528 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
64.3 bits(134) 0.0 30/36(83%) 0/36(0%) Plus/Minus
Query        3  STL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASN  110
                STL TPTNSNVD ALTKLFII+  CQ LKA*SIASN
Subject   6528  STLKTPTNSNVDNALTKLFIILK*CQILKA*SIASN  6635

Range 3: 6529 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 23/36(64%) 0/36(0%) Plus/Minus
Query        2  EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFK  109
                +H  NT+KLK  Q FN*+IHN   MPNT*GLI  FK
Subject   6529  KHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK  6636

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3

Range 1: 6526 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.9 bits(155) 0.0 30/37(81%) 0/37(0%) Minus/Plus
Query        2  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL  112
                LFEA+D*ALS+WH + IMNNLVKALSTFEF+GV+SVL
Subject   6526  LFEAVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVL  6636

Range 2: 6528 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 27/36(75%) 0/36(0%) Plus/Minus
Query        3  STL*TPTNSNVDKALTKLFIIITPCQTLKA*SIASN  110
                STL TP NS VD ALTKLFII+  CQ LKA*S ASN
Subject   6528  STLKTPINSKVDNALTKLFIILKQCQILKA*STASN  6635

Range 3: 6529 to 6636 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 21/36(58%) 0/36(0%) Plus/Minus
Query        2  EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFK  109
                +H  NT+K +  Q FN +IHN  TMPNT*GLI  FK
Subject   6529  KHTENTYKFEG*QCFNQIIHNTQTMPNT*GLINRFK  6636

Nucleotide Sequence (373 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
373

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 9

Range 1: 797 to 1165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.7 bits(602) 0.0 113/123(92%) 0/123(0%) Minus/Plus
Query        3  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  371
                D*ALS+WHGVIIMNNLVKALSTFEFVG+YSVL+FPVVVHSVPGSGKSSLIREL++EDESF+AFTAGVPD+PNL+GRYIKPYSPGCAV+GKINILDEYLSVSDISGFDVLFSDPYQNIS+PREA
Subject    797  D*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREA  1165

Range 2: 797 to 1162 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
186.2 bits(400) 0.0 80/122(66%) 0/122(0%) Plus/Minus
Query        6  LPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  371
                LPWN D+L+ V +*HVKTRN+  RQILIKY+YLPL+ T  RV L+VP   + +V +   K Y+ LVL D+  Y   FTTT +A++NNWK EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI
Subject    797  LPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPLYSTTRRVWLNVPPREVGSVGNAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  1162

Range 3: 940 to 1164 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.2 bits(256) 0.0 55/75(73%) 0/75(0%) Plus/Minus
Query        4  ASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  228
                ASLG L+F  GSEN+TSKPE+S TD+YSSS+FIFP TA PGE GLMYLP R G+SGTPAVKA K SSS  SSLI+
Subject    940  ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK  1164

Range 4: 796 to 891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
66.6 bits(139) 0.0 30/32(94%) 0/32(0%) Plus/Minus
Query      277  STL*TPTNSNVDKALTKLFIIITPCQTLKA*S  372
                STL* PTNSNVDKALTKLFIIITPCQ LKA*S
Subject    796  STL*IPTNSNVDKALTKLFIIITPCQILKA*S  891

Range 5: 796 to 1167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
156.4 bits(335) 0.0 78/124(63%) 0/124(0%) Minus/Plus
Query        1  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT  372
                RLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQISSCC  R  *W*K  +K    *GR F S Y   +R S+   +VH A+LS +C   EDK+T**V VC *+FWF*R I  P+ ++Q SKGG+
Subject    796  RLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSRHSQPLWEVH*AILSWLCCKGEDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGS  1167

Range 6: 795 to 1163 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.8 bits(314) 0.0 76/123(62%) 0/123(0%) Plus/Minus
Query        5  PPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  373
                PPLE *    G +I RQNQK   QT+THQV LSS   H  ES A*CT     +C     *+L  +RPQ    L   FYHY  R  QQLEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL
Subject    795  PPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSPLQHNQESMA*CTSQRGWECRERRP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL  1163

Range 7: 1023 to 1163 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 29/47(62%) 0/47(0%) Minus/Plus
Query        5  GTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGR  145
                GT S TL  V  +GR* YLMSICL + FLVLTCY  T  + S FQGR
Subject   1023  GTLSHTLLVVL*RGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGR  1163

Range 8: 867 to 917 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.4 bits(71) 0.0 14/17(82%) 0/17(0%) Minus/Plus
Query      251  SLWVFIACSNFQLLSIA  301
                SLWVFIACS+FQLL  A
Subject    867  SLWVFIACSDFQLLFTA  917

Range 9: 795 to 827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 11/11(100%) 0/11(0%) Minus/Plus
Query      341  *IRP*VFGMV*  373
                *IRP*VFGMV*
Subject    795  *IRP*VFGMV*  827

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9

Range 1: 6541 to 6909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
278.3 bits(601) 0.0 114/123(93%) 0/123(0%) Minus/Plus
Query        3  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  371
                D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVL+FPVVVHSVPGSGKSSLIREL++EDE+F+AFTAGVPD+PNL+GRYIKPYSPGCAV+GKINILDEYLSVSDISGFDVLFSDPYQNIS+PREA
Subject   6541  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREA  6909

Range 2: 6541 to 6906 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
188.5 bits(405) 0.0 82/122(67%) 0/122(0%) Plus/Minus
Query        6  LPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  371
                LPWN D+L+ V +*HVKTRN+  RQILIKY+YLP + T  RV LDVP   +  V +   K Y+ LVL D+  Y  TFTTT +AM+NNWK EHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI
Subject   6541  LPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPFYSTTRRVWLDVPPREVGCVRNAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  6906

Range 3: 6540 to 6911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
172.9 bits(371) 0.0 82/124(66%) 0/124(0%) Minus/Plus
Query        1  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT  372
                RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCC *R  *W*K* +K    *GR F S Y   +  ++   +VHQA+LS +C  REDK+T**V VC *+FWF*R I  P+ ++Q SKGG+
Subject   6540  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCS*RSW*W*K*FNKRTCH*GREFHSLYGRRS*HTQPLWEVHQAILSWLCCKREDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGS  6911

Range 4: 6684 to 6908 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
120.7 bits(257) 0.0 55/75(73%) 0/75(0%) Plus/Minus
Query        4  ASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  228
                ASLG L+F  GSEN+TSKPE+S TD+YSSS+FIFP TA PGE GLMYLP R G+SGTPAVKA K SSS  SSLI+
Subject   6684  ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKFSSSVTSSLIK  6908

Range 5: 6540 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
72.1 bits(151) 0.0 32/32(100%) 0/32(0%) Plus/Minus
Query      277  STL*TPTNSNVDKALTKLFIIITPCQTLKA*S  372
                STL*TPTNSNVDKALTKLFIIITPCQTLKA*S
Subject   6540  STL*TPTNSNVDKALTKLFIIITPCQTLKA*S  6635

Range 6: 6539 to 6907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 81/123(66%) 0/123(0%) Plus/Minus
Query        5  PPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  373
                PPLE *    G +I RQNQK   QT+THQV LSSL  H  ES A*CT      C     *+L  +RPQ    L  YFYHY  RY QQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL
Subject   6539  PPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSLLQHNQESMA*CTSQRGWVCQERRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  6907

Range 7: 6767 to 6907 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 31/47(66%) 0/47(0%) Minus/Plus
Query        5  GTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGR  145
                GTSS TL  V  KGR* YLMSICL + FLVLTCY  T  + S FQGR
Subject   6767  GTSSHTLLVVL*KGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGR  6907

Range 8: 6611 to 6661 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 15/17(88%) 0/17(0%) Minus/Plus
Query      251  SLWVFIACSNFQLLSIA  301
                SLWVFIACS+FQLL IA
Subject   6611  SLWVFIACSDFQLLFIA  6661

Range 9: 6539 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 11/11(100%) 0/11(0%) Minus/Plus
Query      341  *IRP*VFGMV*  373
                *IRP*VFGMV*
Subject   6539  *IRP*VFGMV*  6571

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 7

Range 1: 800 to 1165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
273.2 bits(590) 0.0 117/122(96%) 0/122(0%) Minus/Plus
Query        3  *ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  368
                *ALSVW GV IMNNLVKALS FEFVGV+ VLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA
Subject    800  *ALSVWRGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  1165

Range 2: 800 to 1165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
254.5 bits(549) 0.0 98/122(80%) 0/122(0%) Plus/Minus
Query        3  CLPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GL  368
                CLPWNADVLVGV*E H+KTRNIRDRQ+LIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKS+KR VLR++LPY ATFTTTW+ M+NNWKF++  + +K K RQS +*VIHN HT PNT*GL
Subject    800  CLPWNADVLVGV*EQHIKTRNIRDRQVLIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSHKRFVLRNKLPY*ATFTTTWNTMNNNWKFKYTEHANKFKCRQSLD*VIHNTHTTPNT*GL  1165

Range 3: 799 to 1167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.5 bits(501) 0.0 99/123(80%) 0/123(0%) Minus/Plus
Query        1  LGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT  369
                LGLKCLAWC+YYE*LS  FV +*+C  +    ISSCC *  R*W*K*P+KGA+ *GR+FC FYSGCARQSKSNRKVHQALLSRVCSAREDKYT**V VCL*YFWF* A+LRPLPEHQHSKGGT
Subject    799  LGLKCLAWCEYYE*LSQGFVCI*ICWRVLCT*ISSCCS*CSR*W*K*PNKGAYF*GRIFCGFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VLVCL*YFWF*CAVLRPLPEHQHSKGGT  1167

Range 4: 795 to 1166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
229.7 bits(495) 0.0 102/124(82%) 0/124(0%) Plus/Minus
Query        2  VPPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  373
                VPPLEC*CSGRGLR A QNQKYQRQT+THQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*K QK RPQ+*APL GYFYHYL  Y QQLEI*      Q Q  TK *LSYS* SHHAKHLRP L
Subject    795  VPPLEC*CSGRGLRTAHQNQKYQRQTSTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KPQKIRPQK*APLLGYFYHYLEHYEQQLEI*VHRTRQQIQMQTKP*LSYS*YSHHAKHLRPKL  1166

Range 5: 940 to 1167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
177.9 bits(382) 0.0 75/76(99%) 0/76(0%) Plus/Minus
Query        1  CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  228
                CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSE+SSLIR
Subject    940  CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEISSLIR  1167

Range 6: 796 to 891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 26/32(81%) 0/32(0%) Plus/Minus
Query      277  STL*TPTNSNVDKALTKLFIIITPCQTLKA*S  372
                ST  TPTNSN DKALTKLFII+TP QTLKA*+
Subject    796  STQNTPTNSNADKALTKLFIILTPRQTLKA*T  891

Range 7: 987 to 1166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 57/60(95%) 0/60(0%) Minus/Plus
Query        2  QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGRH  181
                QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMS CLSLIFLVL C SQTPTRTSAFQGRH
Subject    987  QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSTCLSLIFLVLMCCSQTPTRTSAFQGRH  1166

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Ham1

Sequence ID: AB277788.1 Length: 2876 Number of Matches: 7

Range 1: 800 to 1165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
271.4 bits(586) 0.0 114/122(93%) 0/122(0%) Minus/Plus
Query        3  *ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  368
                *ALSVWHGV IMNNLVKALS FEFVGV+ VLKFPVVVHSVPGSGKSSLIRELISEDE+FVAFTAGVPDSPNLTGRYIKPY+PGCAVQGKINILDEYLSVSD SGFDVLFSDPYQN+SIPREA
Subject    800  *ALSVWHGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREA  1165

Range 2: 800 to 1165 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
236.1 bits(509) 0.0 89/122(73%) 0/122(0%) Plus/Minus
Query        3  CLPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GL  368
                CL WNAD+LV V*E H+K R+IRDRQ+LIKY+Y PLHCTPW VGLDVPSC*IWTVWHT C+ +K LV R+ELPY ATFTTTW+ ++NNWKF++  + +K KRRQSF+*VIHN HTMPNT*GL
Subject    800  CLSWNADILVRV*EQHIKARSIRDRQVLIKYVYFPLHCTPWSVGLDVPSC*IWTVWHTCCEGHKSLVFRNELPY*ATFTTTWNTVNNNWKFKYTKHANKFKRRQSFD*VIHNTHTMPNT*GL  1165

Range 3: 940 to 1167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
168.8 bits(362) 0.0 71/76(93%) 0/76(0%) Plus/Minus
Query        1  CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  228
                CASLGML FW*GSENSTSKPE+SETDKYSSS+FIFPCTAHPG *GLMYLPVRFGLSGTPAVKATK SSSEMSSLIR
Subject    940  CASLGMLTFW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKATKASSSEMSSLIR  1167

Range 4: 796 to 891 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.9 bits(131) 0.0 27/32(84%) 0/32(0%) Plus/Minus
Query      277  STL*TPTNSNVDKALTKLFIIITPCQTLKA*S  372
                ST  TPTNSN DKALTKLFII+TPCQTLKA*+
Subject    796  STQNTPTNSNADKALTKLFIILTPCQTLKA*T  891

Range 5: 796 to 1167 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
203.6 bits(438) 0.0 92/124(74%) 0/124(0%) Minus/Plus
Query        1  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT  372
                RLGLKCLAWC+YYE*LS SFV V*+C  +    ISSCC    R*W*K*P+KGAH * R FC  +S CARQSKSNRKVHQAL SRVCSARE+K+T**V VCL*YFW * A+LRPLPE QHSK GT
Subject    796  RLGLKCLAWCEYYE*LSQSFVCV*ICWRVLCT*ISSCCSQCSR*W*K*PNKGAHF*RRGFCGLHSRCARQSKSNRKVHQALRSRVCSARENKHT**VLVCL*YFWL*CAVLRPLPECQHSKRGT  1167

Range 6: 801 to 1166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
196.3 bits(422) 0.0 92/122(75%) 0/122(0%) Plus/Minus
Query        2  VPPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRP  367
                VP LEC* SG+GLR A Q+QKYQRQT+THQV L SLALHTLE RA*CTFLLDLDCLAH L*+ QK R Q+*APL GYFYHYL    QQLEI*      Q QT TKL*LSYS* SHHAKHLRP
Subject    801  VPLLEC*HSGKGLRTAHQSQKYQRQTSTHQVCLFSLALHTLERRA*CTFLLDLDCLAHLL*RPQKPRLQK*APLLGYFYHYLEHCEQQLEI*VHKTRQQIQTQTKL*LSYS*YSHHAKHLRP  1166

Range 7: 987 to 1166 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.0 bits(238) 0.0 49/60(82%) 0/60(0%) Minus/Plus
Query        2  QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGRH  181
                Q+VCQTVQI*QEGTSSPTLQGVQCKG+* YLMS CLSLI L L C SQT TR SAFQ RH
Subject    987  QQVCQTVQI*QEGTSSPTLQGVQCKGK*TYLMSTCLSLILLALMCCSQTLTRMSAFQERH  1166

Rupestris stem pitting associated virus strain BS, complete genome

Sequence ID: AY881627.1 Length: 8743 Number of Matches: 7

Range 1: 6544 to 6909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
273.2 bits(590) 0.0 117/122(96%) 0/122(0%) Minus/Plus
Query        3  *ALSVWHGVIIMNNLVKALSTFEFVGVYSVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  368
                *ALSVW GV IMNNLVKALS FEFVGV+ VLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA
Subject   6544  *ALSVWRGVSIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKINILDEYLSVSDISGFDVLFSDPYQNISIPREA  6909

Range 2: 6544 to 6909 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
263.6 bits(569) 0.0 102/122(84%) 0/122(0%) Plus/Minus
Query        3  CLPWNADVLVGV*E*HVKTRNIRDRQILIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSYKRLVLRDELPYQATFTTTWDAMDNNWKFEHAINTHKLKRRQSFN*VIHNNHTMPNT*GL  368
                CLPWNADVLVGV*E H+KTRNIRDRQ+LIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKS+KR VLRDELPY ATFTTTW+ M+NNWKF+H  +T+K K RQS +*VIHN HT PNT*GL
Subject   6544  CLPWNADVLVGV*EQHIKTRNIRDRQVLIKYIYLPLHCTPWRVGLDVPSC*IWTVWHTRCKSHKRFVLRDELPY*ATFTTTWNTMNNNWKFKHTEHTNKFKCRQSLD*VIHNTHTTPNT*GL  6909

Range 3: 6543 to 6911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
242.5 bits(523) 0.0 102/123(83%) 0/123(0%) Minus/Plus
Query        1  LGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCP*RPR*W*K*PDKGAHL*GRVFCSFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VFVCL*YFWF*RAILRPLPEHQHSKGGT  369
                LGLKCLAWC+YYE*LS  FV +*+C C+  A ISSCC *  R*W*K*P+KGAHL*GR+FC FYSGCARQSKSNRKVHQALLSRVCSAREDKYT**V VCL*YFWF* A+LRPLP+HQHSKGGT
Subject   6543  LGLKCLAWCEYYE*LSQGFVCI*ICWCVLCA*ISSCCS*CSR*W*K*PNKGAHL*GRIFCGFYSGCARQSKSNRKVHQALLSRVCSAREDKYT**VLVCL*YFWF*CAVLRPLPKHQHSKGGT  6911

Range 4: 6545 to 6910 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
232.0 bits(500) 0.0 103/122(84%) 0/122(0%) Plus/Minus
Query        2  VPPLEC*CSGRGLRIARQNQKYQRQTNTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KLQKTRPQR*APLSGYFYHYLGRYGQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRP  367
                VPPLEC*C GRGLR A QNQKYQRQT+THQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*K QK RPQR*APL GYFYHYL  Y QQLEI*A   H Q Q  TK *LSYS* SHHAKHLRP
Subject   6545  VPPLEC*CFGRGLRTAHQNQKYQRQTSTHQVYLSSLALHTLESRA*CTFLLDLDCLAHPL*KPQKIRPQR*APLLGYFYHYLEHYEQQLEI*AHRTHQQIQMQTKP*LSYS*YSHHAKHLRP  6910

Range 5: 6684 to 6911 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
179.8 bits(386) 0.0 76/76(100%) 0/76(0%) Plus/Minus
Query        1  CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  228
                CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR
Subject   6684  CASLGMLMFW*GSENSTSKPEISETDKYSSSIFIFPCTAHPGE*GLMYLPVRFGLSGTPAVKATKDSSSEMSSLIR  6911

Range 6: 6540 to 6635 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 26/32(81%) 0/32(0%) Plus/Minus
Query      277  STL*TPTNSNVDKALTKLFIIITPCQTLKA*S  372
                ST  TPTNSN DKALTKLFII+TP QTLKA*+
Subject   6540  STQNTPTNSNADKALTKLFIILTPRQTLKA*T  6635

Range 7: 6731 to 6910 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
131.7 bits(281) 0.0 56/60(93%) 0/60(0%) Minus/Plus
Query        2  QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSICLSLIFLVLTCYSQTPTRTSAFQGRH  181
                QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMS CLSLIFLVL C SQTPT+TSAFQGRH
Subject   6731  QRVCQTVQI*QEGTSSPTLQGVQCKGR*IYLMSTCLSLIFLVLMCCSQTPTKTSAFQGRH  6910

Nucleotide Sequence (321 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
33
66
99
132
165
198
231
264
297
321

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate VF1, partial genome

Sequence ID: KT948710.1 Length: 8716 Number of Matches: 7

Range 1: 7546 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.6 bits(462) 0.0 95/106(90%) 0/106(0%) Plus/Plus
Query        2  LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA  319
                LVG AIA  ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLK LELARAQKA
Subject   7546  LVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKALELARAQKA  7863

Range 2: 7545 to 7865 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
211.8 bits(456) 0.0 96/107(90%) 0/107(0%) Minus/Minus
Query        1  GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR  321
                GAF*ALANSK LSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP*  PLLLSTCARI +AIA PTR
Subject   7545  GAF*ALANSKALSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPTR  7865

Range 3: 7549 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
176.1 bits(378) 0.0 79/105(75%) 0/105(0%) Minus/Minus
Query        5  SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY  319
                SFLSPC*L*SLKSGFICFI*LARQLSNLT HLTLSTTVINFINFLANP*SLQT+ H  NC S   +W+ IFNQY*LP   YET L++T  AV MCKD   NC++Y
Subject   7549  SFLSPC*L*SLKSGFICFI*LARQLSNLTCHLTLSTTVINFINFLANP*SLQTTQHLFNCSS*GLAWSAIFNQY*LPGGSYETALMVTTTAVYMCKDLDGNCNSY  7863

Range 4: 7556 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.4 bits(346) 0.0 80/103(78%) 0/103(0%) Plus/Plus
Query       12  LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL  320
                LQL   SLHM TA++V IK VS*   GSQY*LKI  Q +  L QL++C  V*RL*GLAKKLMKLITVVERVKW+VKLESCLASQMKHMKPDLRL*S*QGLKKL
Subject   7556  LQLPSKSLHM*TAVVVTIKAVS*EPPGSQY*LKIADQARP*LLQLKRCWVV*RL*GLAKKLMKLITVVERVKWQVKLESCLASQMKHMKPDLRL*S*QGLKKL  7864

Range 5: 7590 to 7865 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 73/92(79%) 0/92(0%) Plus/Plus
Query       46  QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS  321
                QQ*W* SRL HK +RGVN D*KL  KR     S*  V   EGFRG*PKS**N*LQLLKELNG+SNWKVAWRVK*SI*SQT* FRVSKGSKSS
Subject   7590  QQ*W*PSRLFHKSHRGVNTD*KLRTKRGPSCYS*RGVGWSEGFRG*PKS**N*LQLLKELNGKSNWKVAWRVK*SI*SQT*GFRVSKGSKSS  7865

Range 6: 7724 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.4 bits(239) 0.0 45/47(96%) 0/47(0%) Minus/Minus
Query      180  ELFEPLLTLKS*VWLHMLHLTRQATFQFDSPFNSFNNCNQFHQLFG*  320
                ELFEPLLTLK *VWLHMLHLTRQATFQFD PFNSFNNCNQFHQLFG*
Subject   7724  ELFEPLLTLKP*VWLHMLHLTRQATFQFDLPFNSFNNCNQFHQLFG*  7864

Range 7: 7580 to 7657 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 17/26(65%) 0/26(0%) Minus/Minus
Query       36  NFQSILTXXXXX*DNLDYHHYCCRHV  113
                NFQS+LTP   L*++LD +HYCC HV
Subject   7580  NFQSVLTPRWLL*NSLDGYHYCCLHV  7657

Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome

Sequence ID: KX274274.1 Length: 8725 Number of Matches: 7

Range 1: 7545 to 7862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 94/106(89%) 0/106(0%) Plus/Plus
Query        2  LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA  319
                LVG AIA  ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQ+GKLPGESNEAYEARLK LELARAQKA
Subject   7545  LVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQVGKLPGESNEAYEARLKALELARAQKA  7862

Range 2: 7544 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
206.8 bits(445) 0.0 94/107(88%) 0/107(0%) Minus/Minus
Query        1  GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR  321
                GAF*ALANSK LSLASYAS DSPGNFP *LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP*  PLLLSTCARI +AIA PTR
Subject   7544  GAF*ALANSKALSLASYASLDSPGNFPT*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPTR  7864

Range 3: 7545 to 7862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
161.9 bits(347) 0.0 74/106(70%) 0/106(0%) Minus/Minus
Query        2  SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAYK  319
                SFLSPC*L*SLK GFICFI LARQLS LT HLTLSTTVINFIN LANP*SLQT+ H  NC S   +W TI NQY*LP   YET L++   AV MCKD   NC++Y+
Subject   7545  SFLSPC*L*SLKPGFICFIRLARQLSYLTCHLTLSTTVINFINLLANP*SLQTAQHLFNCGS*GLAWPTILNQY*LPGGSYETALMVATTAVYMCKDLDGNCNSYQ  7862

Range 4: 7555 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 75/103(73%) 0/103(0%) Plus/Plus
Query       12  LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL  320
                LQL   SLHM TA++  IK VS*   GSQY*L+IV Q +  L QL++C  V*RL*GLAK+LMKLITVVERVKW+VK ESCLAS MKHMKP LRL*S*QGLKKL
Subject   7555  LQLPSKSLHM*TAVVATIKAVS*EPPGSQY*LRIVGQARP*LPQLKRCWAV*RL*GLAKRLMKLITVVERVKWQVK*ESCLASLMKHMKPGLRL*S*QGLKKL  7863

Range 5: 7589 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
134.9 bits(288) 0.0 68/92(74%) 0/92(0%) Plus/Plus
Query       46  QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS  321
                QQ*W  SRL HK +RGVN D*+LW KR    +S*  V R EGFRG*PK **N*LQLLKELNG+S+ KVAWRV *SI*SQ * FRVSKGSKSS
Subject   7589  QQ*WQPSRLFHKSHRGVNTD*ELWAKRGPSCHS*RGVGRSEGFRG*PKG**N*LQLLKELNGKSSRKVAWRV**SI*SQA*GFRVSKGSKSS  7864

Range 6: 7723 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
97.7 bits(207) 0.0 40/47(85%) 0/47(0%) Minus/Minus
Query      180  ELFEPLLTLKS*VWLHMLHLTRQATFQFDSPFNSFNNCNQFHQLFG*  320
                ELFEPLLTLK * WLHMLH TRQATF  D PFNSFNNCNQFHQ FG*
Subject   7723  ELFEPLLTLKP*AWLHMLH*TRQATFLLDLPFNSFNNCNQFHQPFG*  7863

Range 7: 7579 to 7659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
36.3 bits(73) 0.0 17/27(63%) 0/27(0%) Minus/Minus
Query       36  HNFQSILTXXXXX*DNLDYHHYCCRHV  116
                HN QS+LTP   L*++LD  HYCC HV
Subject   7579  HNSQSVLTPRWLL*NSLDGCHYCCLHV  7659

Grapevine rupestris stem pitting associated virus isolate SK30, complete genome

Sequence ID: KX274277.1 Length: 8724 Number of Matches: 7

Range 1: 7545 to 7862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
214.1 bits(461) 0.0 94/106(89%) 0/106(0%) Plus/Plus
Query        2  LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA  319
                LVG AIA  ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQ+GKLPGESNEAYEARLK LELARAQKA
Subject   7545  LVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQVGKLPGESNEAYEARLKALELARAQKA  7862

Range 2: 7544 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.6 bits(451) 0.0 95/107(89%) 0/107(0%) Minus/Minus
Query        1  GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR  321
                GAF*ALANSK LSLASYASFDSPGNFP *LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP*  PLLLSTCARI +AIA PTR
Subject   7544  GAF*ALANSKALSLASYASFDSPGNFPT*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPTR  7864

Range 3: 7548 to 7862 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
162.4 bits(348) 0.0 76/105(72%) 0/105(0%) Minus/Minus
Query        5  SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY  319
                S LSP *L*SLKSGFICFI*LA  LSNLT HLTLSTTVINFINFLANP*SLQT+ H  NC S   +W TI NQY*LP  PYET L++T  AV MCKD   NC++Y
Subject   7548  SLLSPR*L*SLKSGFICFI*LAW*LSNLTCHLTLSTTVINFINFLANP*SLQTAQHLFNCSS*GLAWPTILNQY*LPGGPYETALMVTTTAVYMCKDLDGNCNSY  7862

Range 4: 7555 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.9 bits(334) 0.0 77/103(75%) 0/103(0%) Plus/Plus
Query       12  LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL  320
                LQL   SLHM TA++V IK VS*G  GSQY*L+IV Q +  L QL++C  V*RL*GLAKKLMKLITVVERVKW+VKLES  ASQMKHMKPDLRL*S*+GLK+L
Subject   7555  LQLPSKSLHM*TAVVVTIKAVS*GPPGSQY*LRIVGQARP*LLQLKRCWAV*RL*GLAKKLMKLITVVERVKWQVKLESYQASQMKHMKPDLRL*S*RGLKRL  7863

Range 5: 7589 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.3 bits(302) 0.0 70/92(76%) 0/92(0%) Plus/Plus
Query       46  QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS  321
                QQ*W* SRL HKG+RGVN D*+LW KR     S*  V R EGFRG*PKS**N*LQLLKELNG+S+WKV  RVK*SI*SQT* FRVS+GSK S
Subject   7589  QQ*W*PSRLFHKGHRGVNTD*ELWAKRGPSCYS*RGVGRSEGFRG*PKS**N*LQLLKELNGKSSWKVTRRVK*SI*SQT*GFRVSEGSKGS  7864

Range 6: 7723 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
98.7 bits(209) 0.0 40/47(85%) 0/47(0%) Minus/Minus
Query      180  ELFEPLLTLKS*VWLHMLHLTRQATFQFDSPFNSFNNCNQFHQLFG*  320
                E FEP LTLK *VWLHMLHLTR  TFQ D PFNSFNNCNQFHQLFG*
Subject   7723  EPFEPSLTLKP*VWLHMLHLTRLVTFQLDLPFNSFNNCNQFHQLFG*  7863

Range 7: 7579 to 7659 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 18/27(67%) 0/27(0%) Minus/Minus
Query       36  HNFQSILTXXXXX*DNLDYHHYCCRHV  116
                HN QS+LTP  PL*++LD +HYCC HV
Subject   7579  HNSQSVLTPRWPL*NSLDGYHYCCLHV  7659

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hai1

Sequence ID: AB277787.1 Length: 2876 Number of Matches: 7

Range 1: 1801 to 2118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.6 bits(451) 0.0 92/106(87%) 0/106(0%) Plus/Plus
Query        2  LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA  319
                LVG AIA  ILAHVDS++G ++GC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEID+SC*KS*MASQ+GKLPGESNEAYEARLK LELARAQKA
Subject   1801  LVGVAIAIQILAHVDSSSGSHRGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDHSC*KS*MASQVGKLPGESNEAYEARLKALELARAQKA  2118

Range 2: 1800 to 2120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
207.3 bits(446) 0.0 94/107(88%) 0/107(0%) Minus/Minus
Query        1  GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTR  321
                GAF*ALANSK LSLASYASFDSPGNFP *LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP   PLLLSTCARI +AIA PTR
Subject   1800  GAF*ALANSKALSLASYASFDSPGNFPT*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQPRWLPLLLSTCARIWMAIATPTR  2120

Range 3: 1804 to 2118 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
174.7 bits(375) 0.0 79/105(75%) 0/105(0%) Minus/Minus
Query        5  SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY  319
                S LSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQT+ H  NC S   +W TI NQY*LP  PYET  + T  AV MCKD   NC++Y
Subject   1804  SLLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTAQHLFNCSS*GLAWPTILNQY*LPGGPYETASMATTTAVYMCKDLDGNCNSY  2118

Range 4: 1811 to 2119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
165.6 bits(355) 0.0 80/103(78%) 0/103(0%) Plus/Plus
Query       12  LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL  320
                LQL   SLHM TA++V I+ VS*G  GSQY*L+IV Q +  L QL++C  V*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLK+L
Subject   1811  LQLPSKSLHM*TAVVVAIEAVS*GPPGSQY*LRIVGQARP*LLQLKRCWAV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKRL  2119

Range 5: 1845 to 2120 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.4 bits(322) 0.0 73/92(79%) 0/92(0%) Plus/Plus
Query       46  QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS  321
                QQ*W* SRL HKG+RGVN D*+LW KR     S*  V R EGFRG*PKS**N* QLLKELNGES+WKVAWRVK*SI*SQT* FRVSKGSK S
Subject   1845  QQ*W*PSRLFHKGHRGVNTD*ELWAKRGPSCYS*RGVGRSEGFRG*PKS**N*SQLLKELNGESSWKVAWRVK*SI*SQT*GFRVSKGSKGS  2120

Range 6: 1979 to 2119 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 43/47(91%) 0/47(0%) Minus/Minus
Query      180  ELFEPLLTLKS*VWLHMLHLTRQATFQFDSPFNSFNNCNQFHQLFG*  320
                E FEPLLTLK *VWLHMLHLTRQATFQ DSPFNSFNNC+QFHQLFG*
Subject   1979  EPFEPLLTLKP*VWLHMLHLTRQATFQLDSPFNSFNNCDQFHQLFG*  2119

Range 7: 1835 to 1915 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 18/27(67%) 0/27(0%) Minus/Minus
Query       36  HNFQSILTXXXXX*DNLDYHHYCCRHV  116
                HN QS+LTP  PL*++LD +HYCC HV
Subject   1835  HNSQSVLTPRWPL*NSLDGYHYCCLHV  1915

Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome

Sequence ID: KX958435.1 Length: 8743 Number of Matches: 7

Range 1: 7546 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
213.7 bits(460) 0.0 94/106(89%) 0/106(0%) Plus/Plus
Query        2  LVGAAIATLILAHVDSNNGDNQGCLIRATGESILIENCGPREALASTVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKTLELARAQKA  319
                +VG AIA  ILAHVDS++G++QGC IRATGESILIENCGP EALA+TVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLK LELARAQKA
Subject   7546  IVGVAIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALAATVKEVLGGLKALGVSQKVDEIDYSC*KS*MASQIGKLPGESNEAYEARLKALELARAQKA  7863

Range 2: 7548 to 7865 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.6 bits(451) 0.0 95/106(90%) 0/106(0%) Minus/Minus
Query        4  GAF*ALANSKVLSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFKPPNTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPT  321
                GAF*ALANSK LSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAF+PPNTSLTV A ASLGPQFSI+IDSPVALM+QP*  PLLLSTCARI +AIA PT
Subject   7548  GAF*ALANSKALSLASYASFDSPGNFPI*LAI*LFQQL*SISSTFWLTPKAFRPPNTSLTVAARASLGPQFSISIDSPVALMKQP*WLPLLLSTCARIWMAIATPT  7865

Range 3: 7549 to 7863 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
181.1 bits(389) 0.0 81/105(77%) 0/105(0%) Minus/Minus
Query        5  SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTS*HFLNC*SKCFSWATIFNQY*LPCSPYETTLIITIIAVDMCKD*GCNCSAY  319
                SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQT+ H  NC S   +W TIFNQY*LP   YET L++T  AV MCKD   NC++Y
Subject   7549  SFLSPC*L*SLKSGFICFI*LARQLSNLTRHLTLSTTVINFINFLANP*SLQTTQHLFNCSS*GLAWPTIFNQY*LPGGSYETALMVTTTAVYMCKDLDGNCNSY  7863

Range 4: 7556 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.0 bits(356) 0.0 82/103(80%) 0/103(0%) Plus/Plus
Query       12  LQLQP*SLHMSTAIMVIIKVVS*GLQGSQY*LKIVAQEKHLLQQLRKC*EV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL  320
                LQL   SLHM TA++V IK VS*   GSQY*LKIV Q +  L QL++C  V*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL
Subject   7556  LQLPSKSLHM*TAVVVTIKAVS*EPPGSQY*LKIVGQARP*LLQLKRCWVV*RL*GLAKKLMKLITVVERVKWRVKLESCLASQMKHMKPDLRL*S*QGLKKL  7864

Range 5: 7590 to 7865 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.7 bits(327) 0.0 75/92(82%) 0/92(0%) Plus/Plus
Query       46  QQ*W**SRLSHKGYRGVNID*KLWPKRSTCFNS*GSVRRFEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*DFRVSKGSKSS  321
                QQ*W* SRL HK +RGVN D*KLW KR     S*  V   EGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT* FRVSKGSKSS
Subject   7590  QQ*W*PSRLFHKSHRGVNTD*KLWAKRGPSCYS*RGVGWSEGFRG*PKS**N*LQLLKELNGESNWKVAWRVK*SI*SQT*GFRVSKGSKSS  7865

Range 6: 7724 to 7864 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
115.2 bits(245) 0.0 46/47(98%) 0/47(0%) Minus/Minus
Query      180  ELFEPLLTLKS*VWLHMLHLTRQATFQFDSPFNSFNNCNQFHQLFG*  320
                ELFEPLLTLK *VWLHMLHLTRQATFQFDSPFNSFNNCNQFHQLFG*
Subject   7724  ELFEPLLTLKP*VWLHMLHLTRQATFQFDSPFNSFNNCNQFHQLFG*  7864

Range 7: 7580 to 7660 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
42.3 bits(86) 0.0 18/27(67%) 0/27(0%) Minus/Minus
Query       36  HNFQSILTXXXXX*DNLDYHHYCCRHV  116
                HNFQS+LTP   L*++LD +HYCC HV
Subject   7580  HNFQSVLTPRWLL*NSLDGYHYCCLHV  7660

Nucleotide Sequence (184 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
19
38
57
76
95
114
133
152
171
184

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9

Range 1: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
141.7 bits(303) 0.0 59/60(98%) 0/60(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  182
                E LVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI
Subject   6541  EILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  6720

Range 2: 6539 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
139.4 bits(298) 0.0 61/61(100%) 0/61(0%) Plus/Minus
Query        2  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  184
                *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL
Subject   6539  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  6721

Range 3: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.2 bits(293) 0.0 59/60(98%) 0/60(0%) Minus/Plus
Query        3  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  182
                D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDE+F
Subject   6541  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENF  6720

Range 4: 6540 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 34/34(100%) 0/34(0%) Minus/Plus
Query       82  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  183
                RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI
Subject   6540  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 5: 6675 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 16/16(100%) 0/16(0%) Minus/Plus
Query        1  *K*FNKRTCH*GREFH  48
                *K*FNKRTCH*GREFH
Subject   6675  *K*FNKRTCH*GREFH  6722

Range 6: 6611 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.5 bits(130) 0.0 36/37(97%) 0/37(0%) Minus/Plus
Query        2  SLWVFIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS  112
                SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTR+S
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS  6721

Range 7: 6539 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 11/11(100%) 0/11(0%) Minus/Plus
Query      152  *IRP*VFGMV*  184
                *IRP*VFGMV*
Subject   6539  *IRP*VFGMV*  6571

Range 8: 6540 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 22/22(100%) 0/22(0%) Plus/Minus
Query      118  VDKALTKLFIIITPCQTLKA*S  183
                VDKALTKLFIIITPCQTLKA*S
Subject   6540  VDKALTKLFIIITPCQTLKA*S  6605

Range 9: 6684 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/13(92%) 0/13(0%) Plus/Minus
Query        1  MKLSSSVTSSLIK  39
                MK SSSVTSSLIK
Subject   6684  MKFSSSVTSSLIK  6722

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8

Range 1: 797 to 976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
140.4 bits(300) 0.0 58/60(97%) 0/60(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  182
                ETLVLSDKFSY*T FTTTRNA+NNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI
Subject    797  ETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  976

Range 2: 797 to 976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 58/60(97%) 0/60(0%) Minus/Plus
Query        3  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  182
                D*ALS+WHGVIIMNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIRELVTEDESF
Subject    797  D*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  976

Range 3: 795 to 977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 57/61(93%) 0/61(0%) Plus/Minus
Query        2  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  184
                *NSRPQ*QVLLLN FYHYQER EQQLEI*ARYK+PQTQT*TKL*LSYS**SHHAK+LRPNL
Subject    795  *NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL  977

Range 4: 796 to 978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 57/61(93%) 0/61(0%) Minus/Plus
Query        1  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQIXXXXXXXXXXW*K*FNKRTCH*GREFH  183
                RLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQISSCCS RSW*W*K FNKRTCH*GREFH
Subject    796  RLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFH  978

Range 5: 867 to 977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.6 bits(126) 0.0 35/37(95%) 0/37(0%) Minus/Plus
Query        2  SLWVFIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS  112
                SLWVFIACSDFQLLF AFLVVVK V**ENLSLRTRVS
Subject    867  SLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS  977

Range 6: 795 to 827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
23.1 bits(44) 0.0 11/11(100%) 0/11(0%) Minus/Plus
Query      152  *IRP*VFGMV*  184
                *IRP*VFGMV*
Subject    795  *IRP*VFGMV*  827

Range 7: 796 to 861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.8 bits(98) 0.0 21/22(95%) 0/22(0%) Plus/Minus
Query      118  VDKALTKLFIIITPCQTLKA*S  183
                VDKALTKLFIIITPCQ LKA*S
Subject    796  VDKALTKLFIIITPCQILKA*S  861

Range 8: 940 to 978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        1  MKLSSSVTSSLIK  39
                MKLSSSVTSSLIK
Subject    940  MKLSSSVTSSLIK  978

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 8

Range 1: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 57/60(95%) 0/60(0%) Minus/Plus
Query        3  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  182
                D*ALSVWH  IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDESF
Subject   6541  D*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF  6720

Range 2: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
125.7 bits(268) 0.0 53/60(88%) 0/60(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  182
                ETLV S++ SY TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNN  MPNT*GLI
Subject   6541  ETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLI  6720

Range 3: 6539 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
119.7 bits(255) 0.0 55/61(90%) 0/61(0%) Plus/Minus
Query        2  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL  184
                *NSR Q*  LL NYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**S++AKHLRPNL
Subject   6539  *NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL  6721

Range 4: 6540 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.6 bits(150) 0.0 32/34(94%) 0/34(0%) Minus/Plus
Query       82  RLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  183
                RLGLKCLA  DYYE*LS*SFVYV*VCGCL*RAQI
Subject   6540  RLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 5: 6675 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 11/16(69%) 0/16(0%) Minus/Plus
Query        1  *K*FNKRTCH*GREFH  48
                *K*F+KR  +* REFH
Subject   6675  *K*FDKRAHY*RREFH  6722

Range 6: 6611 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 33/37(89%) 0/37(0%) Minus/Plus
Query        2  SLWVFIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS  112
                SLWVFIACSDFQLLFIAFLVVVKVV**E+  L+TRVS
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS  6721

Range 7: 6540 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.4 bits(84) 0.0 20/22(91%) 0/22(0%) Plus/Minus
Query      118  VDKALTKLFIIITPCQTLKA*S  183
                VDKALTKLFIII  CQTLKA*S
Subject   6540  VDKALTKLFIII**CQTLKA*S  6605

Range 8: 6684 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 12/13(92%) 0/13(0%) Plus/Minus
Query        1  MKLSSSVTSSLIK  39
                MKLSSSV SSLIK
Subject   6684  MKLSSSVMSSLIK  6722

Rupestris stem pitting associated virus strain SG1, complete genome

Sequence ID: AY881626.1 Length: 8742 Number of Matches: 3

Range 1: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 50/60(83%) 0/60(0%) Minus/Plus
Query        3  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  182
                D*ALS+WH + IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF
Subject   6541  D*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF  6720

Range 2: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 37/60(62%) 0/60(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  182
                ETLVL D   Y*TT TT R  M N+WK +H  NT+KL+  Q FN +IHN  TMPNT*GLI
Subject   6541  ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKLEG*QCFNQIIHNTQTMPNT*GLI  6720

Range 3: 6542 to 6718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.3 bits(123) 0.0 33/59(56%) 0/59(0%) Plus/Minus
Query        5  NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPN  181
                NSRP     LLNY YH Q  Y  +LEI*A  KH  T+  T L* +YS* S++AK+LRPN
Subject   6542  NSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*TRRLTML*PNYS*YSNNAKYLRPN  6718

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3

Range 1: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
123.4 bits(263) 0.0 50/60(83%) 0/60(0%) Minus/Plus
Query        3  D*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  182
                D*ALS+WH + IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIREL++EDESF
Subject   6541  D*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF  6720

Range 2: 6541 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
80.3 bits(169) 0.0 36/60(60%) 0/60(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLI  182
                ETLVL D   Y*TT TT R  M N+WK +H  NT+K +  Q FN +IHN  TMPNT*GLI
Subject   6541  ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKFEG*QCFNQIIHNTQTMPNT*GLI  6720

Range 3: 6542 to 6718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 32/59(54%) 0/59(0%) Plus/Minus
Query        5  NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPN  181
                NSRP     LLNY YH Q  Y  +LEI*A  KH   +  T L* +YS* S++AK+LRPN
Subject   6542  NSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*IRRLTML*PNYS*YSNNAKYLRPN  6718

Nucleotide Sequence (199 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
20
40
60
80
100
120
140
160
180
199

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 9

Range 1: 6526 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.0 bits(321) 0.0 63/65(97%) 0/65(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  197
                E LVLSDKFSY*TTFTTTRNAMNNNWKSEHAI THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ
Subject   6526  EILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  6720

Range 2: 6524 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
146.3 bits(313) 0.0 65/66(98%) 0/66(0%) Plus/Minus
Query        2  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT  199
                *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT
Subject   6524  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT  6721

Range 3: 6526 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
144.5 bits(309) 0.0 63/65(97%) 0/65(0%) Minus/Plus
Query        3  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  197
                LFEAID*ALSVWHGVIIMNNLVKALSTFEFVG YSVLRFPVVVHSVPGSGKSSLIRELVTEDE+F
Subject   6526  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENF  6720

Range 4: 6525 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 38/39(97%) 0/39(0%) Minus/Plus
Query       82  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG*L*RAQI  198
                VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG L*RAQI
Subject   6525  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 5: 6675 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 16/16(100%) 0/16(0%) Minus/Plus
Query        1  *K*FNKRTCH*GREFH  48
                *K*FNKRTCH*GREFH
Subject   6675  *K*FNKRTCH*GREFH  6722

Range 6: 6611 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 35/37(95%) 0/37(0%) Minus/Plus
Query        2  SLWVIIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS  112
                SLWV IACSDFQLLFIAFLVVVKVV**ENLSLRTR+S
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ENLSLRTRIS  6721

Range 7: 6524 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 16/16(100%) 0/16(0%) Minus/Plus
Query      152  GCLKL*IRP*VFGMV*  199
                GCLKL*IRP*VFGMV*
Subject   6524  GCLKL*IRP*VFGMV*  6571

Range 8: 6525 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
61.6 bits(128) 0.0 27/27(100%) 0/27(0%) Plus/Minus
Query      118  VDKALTKLFIIITPCQTLKA*SIASNN  198
                VDKALTKLFIIITPCQTLKA*SIASNN
Subject   6525  VDKALTKLFIIITPCQTLKA*SIASNN  6605

Range 9: 6684 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
26.7 bits(52) 0.0 12/13(92%) 0/13(0%) Plus/Minus
Query        1  MKLSSSVTSSLIK  39
                MK SSSVTSSLIK
Subject   6684  MKFSSSVTSSLIK  6722

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 8

Range 1: 782 to 976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
148.6 bits(318) 0.0 62/65(95%) 0/65(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  197
                ETLVLSDKFSY*T FTTTRNA+NNNWKSEHAI THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ
Subject    782  ETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  976

Range 2: 782 to 976 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
145.4 bits(311) 0.0 63/65(97%) 0/65(0%) Minus/Plus
Query        3  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  197
                LFEAID*ALS+WHGVIIMNNLVKALSTFEFVG YSVLRFPVVVHSVPGSGKSSLIRELVTEDESF
Subject    782  LFEAID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  976

Range 3: 780 to 977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
132.6 bits(283) 0.0 61/66(92%) 0/66(0%) Plus/Minus
Query        2  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTT  199
                *NSRPQ*QVLLLN FYHYQER EQQLEI*ARY +PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTT
Subject    780  *NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTT  977

Range 4: 781 to 978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
109.2 bits(232) 0.0 62/66(94%) 0/66(0%) Minus/Plus
Query        1  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG*L*RAQIXXXXXXXXXXW*K*FNKRTCH*GREFH  198
                VV*SYRLGLK LAWCDYYE*LS*SFVYV*VCG L*RAQISSCCS RSW*W*K FNKRTCH*GREFH
Subject    781  VV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFH  978

Range 5: 867 to 977 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.9 bits(120) 0.0 34/37(92%) 0/37(0%) Minus/Plus
Query        2  SLWVIIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS  112
                SLWV IACSDFQLLF AFLVVVK V**ENLSLRTRVS
Subject    867  SLWVFIACSDFQLLFTAFLVVVKAV**ENLSLRTRVS  977

Range 6: 780 to 827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
35.9 bits(72) 0.0 16/16(100%) 0/16(0%) Minus/Plus
Query      152  GCLKL*IRP*VFGMV*  199
                GCLKL*IRP*VFGMV*
Subject    780  GCLKL*IRP*VFGMV*  827

Range 7: 781 to 861 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 26/27(96%) 0/27(0%) Plus/Minus
Query      118  VDKALTKLFIIITPCQTLKA*SIASNN  198
                VDKALTKLFIIITPCQ LKA*SIASNN
Subject    781  VDKALTKLFIIITPCQILKA*SIASNN  861

Range 8: 940 to 978 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 13/13(100%) 0/13(0%) Plus/Minus
Query        1  MKLSSSVTSSLIK  39
                MKLSSSVTSSLIK
Subject    940  MKLSSSVTSSLIK  978

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9

Range 1: 6526 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
137.6 bits(294) 0.0 61/65(94%) 0/65(0%) Minus/Plus
Query        3  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  197
                LFEAID*ALSVWH  IIMNNLVKALSTFEFVG YSVLRFPVVVHSVPGSGKSSLIREL+TEDESF
Subject   6526  LFEAID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF  6720

Range 2: 6526 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.9 bits(286) 0.0 57/65(88%) 0/65(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQ  197
                ETLV S++ SY TTFTTTRNAMNNNWKSEHAI THKLKRRQSFN*VIHNN  MPNT*GLIYSFKQ
Subject   6526  ETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQ  6720

Range 3: 6527 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.3 bits(265) 0.0 58/65(89%) 0/65(0%) Plus/Minus
Query        2  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQT  196
                *NSR Q*  LL NYFYHYQERYEQQLEI*ARY HPQTQT*TKL*LSYS**S++AKHLRPNL*LQT
Subject   6527  *NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL*LQT  6721

Range 4: 6525 to 6641 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 35/39(90%) 0/39(0%) Minus/Plus
Query       82  VV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG*L*RAQI  198
                +V*SYRLGLKCLA  DYYE*LS*SFVYV*VCG L*RAQI
Subject   6525  IV*SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQI  6641

Range 5: 6675 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
24.0 bits(46) 0.0 11/16(69%) 0/16(0%) Minus/Plus
Query        1  *K*FNKRTCH*GREFH  48
                *K*F+KR  +* REFH
Subject   6675  *K*FDKRAHY*RREFH  6722

Range 6: 6611 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.0 bits(105) 0.0 32/37(86%) 0/37(0%) Minus/Plus
Query        2  SLWVIIACSDFQLLFIAFLXXXXXXX*ENLSLRTRVS  112
                SLWV IACSDFQLLFIAFLVVVKVV**E+  L+TRVS
Subject   6611  SLWVFIACSDFQLLFIAFLVVVKVV**ESSLLKTRVS  6721

Range 7: 6527 to 6568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 12/14(86%) 0/14(0%) Minus/Plus
Query      155  CLKL*IRP*VFGMV  196
                CLKL*IRP*VFG++
Subject   6527  CLKL*IRP*VFGII  6568

Range 8: 6525 to 6605 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.4 bits(108) 0.0 25/27(93%) 0/27(0%) Plus/Minus
Query      118  VDKALTKLFIIITPCQTLKA*SIASNN  198
                VDKALTKLFIII  CQTLKA*SIASNN
Subject   6525  VDKALTKLFIII**CQTLKA*SIASNN  6605

Range 9: 6684 to 6722 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 12/13(92%) 0/13(0%) Plus/Minus
Query        1  MKLSSSVTSSLIK  39
                MKLSSSV SSLIK
Subject   6684  MKLSSSVMSSLIK  6722

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 3

Range 1: 6526 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
130.3 bits(278) 0.0 53/65(82%) 0/65(0%) Minus/Plus
Query        3  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  197
                LFEA+D*ALS+WH + IMNNLVKALSTFEF+G +SVL+FPVV+HSVPGSGKSSLIREL++EDESF
Subject   6526  LFEAVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESF  6720

Range 2: 6529 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 37/64(58%) 0/64(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFK  194
                ETLVL D   Y*TT TT R  M N+WK +H   T+K +  Q FN +IHN  TMPNT*GLI  FK
Subject   6529  ETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKFEG*QCFNQIIHNTQTMPNT*GLINRFK  6720

Range 3: 6530 to 6718 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 33/63(52%) 0/63(0%) Plus/Minus
Query        5  NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQ  193
                NSRP     LLNY YH Q  Y  +LEI*A   H   +  T L* +YS* S++AK+LRPN  LQ
Subject   6530  NSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*IRRLTML*PNYS*YSNNAKYLRPNQPLQ  6718

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 3

Range 1: 6526 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
129.8 bits(277) 0.0 54/65(83%) 0/65(0%) Minus/Plus
Query        3  LFEAID*ALSVWHGVIIMNNLVKALSTFEFVGDYSVLRFPVVVHSVPGSGKSSLIRELVTEDESF  197
                LFEAID*ALS+WH + IMNNLVKALSTFEFVG +SVL+FPVV+HSVPGSGKSSLIREL++EDE+F
Subject   6526  LFEAID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENF  6720

Range 2: 6529 to 6720 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
85.4 bits(180) 0.0 38/64(59%) 0/64(0%) Plus/Minus
Query        3  ETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAIITHKLKRRQSFN*VIHNNHTMPNT*GLIYSFK  194
                E L+L +   Y*TTFTTTR+ MN+ WK +H   T+KLK  Q FN*+IHN   MPNT*GLI  FK
Subject   6529  EILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK  6720

Range 3: 6530 to 6721 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 40/64(62%) 0/64(0%) Plus/Minus
Query        2  *NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYNHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQ  193
                *NS P+    LLNYFYHYQ  YE  LEI*A   H QTQ  T L*L+YS* S++AK+LRPN  LQ
Subject   6530  *NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQ  6721

Nucleotide Sequence (509 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
51
102
153
204
255
306
357
408
459
509

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 7

Range 1: 398 to 877 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
377.3 bits(817) 0.0 154/160(96%) 0/160(0%) Plus/Plus
Query       29  GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG  508
                G  S AFAGDDMCANSRLR KTEHEGFLNMICLKAKV FVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WHGVIIMNNLVKALSTFEFVG
Subject    398  GSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHGVIIMNNLVKALSTFEFVG  877

Range 2: 402 to 878 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.5 bits(752) 0.0 151/159(95%) 0/159(0%) Minus/Minus
Query       33  HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR  509
                +PQTQT*TKL*LSYS**SHHAK+LRPNL*LQTTQKLSTSSC YF*LGTAHSCS LQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHK  GL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHR QKQ+TR
Subject    402  YPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTTQKLSTSSCVYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTR  878

Range 3: 401 to 877 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
347.0 bits(751) 0.0 150/159(94%) 0/159(0%) Minus/Minus
Query       32  THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACKSK*PG  508
                THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLV ISN*EPHTVVV FNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTK  VCDK HLSFKANHI*EPFMFSL+P*SAVSAHVIA KS * G
Subject    401  THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVFISN*EPHTVVVCFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*LG  877

Range 4: 397 to 876 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
343.3 bits(743) 0.0 153/160(96%) 0/160(0%) Minus/Minus
Query       28  PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP  507
                PTNSNVDKALTKLFIIITPCQ LKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQ VGFVTN TLALRQIIFRNPSCSVL LNLLLAHMSSPAKA D  P
Subject    397  PTNSNVDKALTKLFIIITPCQILKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDP  876

Range 5: 403 to 876 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.0 bits(727) 0.0 151/158(96%) 0/158(0%) Plus/Plus
Query       34  RVICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG  507
                RV CFC R*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKP+ LWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*S LQLCAVPS*K* QDEVLNFWVV*SYRLGLK LAWCDYYE*LS*SFVYV*VCG
Subject    403  RVNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*TQDEVLNFWVV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCG  876

Range 6: 402 to 686 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
210.9 bits(454) 0.0 89/95(94%) 0/95(0%) Plus/Plus
Query       33  PGHLLLQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ  317
                P  LLL+AMTCALTAD*GLRLNMKGS*I*FALKLRC LSQT  FVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ
Subject    402  PSQLLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ  686

Range 7: 729 to 827 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
69.8 bits(146) 0.0 32/33(97%) 0/33(0%) Plus/Plus
Query      360  VCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  458
                VCGS*LEI+TR*GAQFLGCLKL*IRP*VFGMV*
Subject    729  VCGS*LEINTR*GAQFLGCLKL*IRP*VFGMV*  827

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 7

Range 1: 6142 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
376.3 bits(815) 0.0 154/160(96%) 0/160(0%) Plus/Plus
Query       29  GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG  508
                G  S AFAGDDMCANSRLR KTEHEGFLNMICLKAKV FVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG
Subject   6142  GSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG  6621

Range 2: 6146 to 6622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
350.2 bits(758) 0.0 152/159(96%) 0/159(0%) Minus/Minus
Query       33  HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR  509
                HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCS LQLPLHSSFQL TRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHK  GL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHR QKQ+T+
Subject   6146  HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLPTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKMWGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRPQKQLTQ  6622

Range 3: 6151 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
345.2 bits(747) 0.0 149/157(95%) 0/157(0%) Minus/Minus
Query       38  THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACKSK*  508
                THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVV FNFLFIHHFN QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTK  VCDK HLSFKANHI*EPFMFSL+P*SAVSAHVIA KS *
Subject   6151  THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCFNFLFIHHFNCQLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKCGVCDKLHLSFKANHI*EPFMFSLKP*SAVSAHVIARKSN*  6621

Range 4: 6141 to 6620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.4 bits(741) 0.0 153/160(96%) 0/160(0%) Minus/Minus
Query       28  PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP  507
                PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISI NSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQ VGFVTN TLALRQIIFRNPSCSVL LNLLLAHMSSPAKA D  P
Subject   6141  PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIANSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRNPSCSVLSLNLLLAHMSSPAKAIDSDP  6620

Range 5: 6150 to 6620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
337.4 bits(730) 0.0 151/157(96%) 0/157(0%) Plus/Plus
Query       37  VICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG  507
                V CFC R*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKP+ LWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRV N*NDE*RGS*S LQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG
Subject   6150  VNCFCGR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPHILWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVGN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG  6620

Range 6: 6155 to 6430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.7 bits(436) 0.0 87/92(95%) 0/92(0%) Plus/Plus
Query       42  LLLQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ  317
                LLL+AMTCALTAD*GLRLNMKGS*I*FALKLRC LSQT  FVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS Q
Subject   6155  LLLRAMTCALTAD*GLRLNMKGS*I*FALKLRCNLSQTPHFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASWQ  6430

Range 7: 6473 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
71.2 bits(149) 0.0 33/33(100%) 0/33(0%) Plus/Plus
Query      360  VCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  458
                VCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*
Subject   6473  VCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  6571

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 7

Range 1: 6142 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
369.9 bits(801) 0.0 153/160(96%) 0/160(0%) Plus/Plus
Query       29  GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG  508
                G  S AFAGDDMCANSRLR KTEHEGFLNMICLKAKV FVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWH  IIMNNLVKALSTFEFVG
Subject   6142  GSESIAFAGDDMCANSRLRLKTEHEGFLNMICLKAKVQFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHY*IIMNNLVKALSTFEFVG  6621

Range 2: 6141 to 6620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
316.8 bits(685) 0.0 144/160(90%) 0/160(0%) Minus/Minus
Query       28  PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP  507
                PTNSNVDKALTKLFIII  CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSP+L*A*DTSIA*LSMQFSRLPISRAMQILSQ++ GFLKIPSLNKHHPQ VGFVTN TLALRQIIFR PSCSVL LNLL AH+SSPA A D  P
Subject   6141  PTNSNVDKALTKLFIII**CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQILSQIN*GFLKIPSLNKHHPQNVGFVTNCTLALRQIIFRKPSCSVLSLNLLFAHISSPANAIDSDP  6620

Range 3: 6145 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
295.7 bits(639) 0.0 128/159(81%) 0/159(0%) Minus/Minus
Query       32  THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACKSK*PG  508
                THKLKRRQSFN*VIHNN  MPNT*GLIYSFKQ RN*A HLVLISN EPHTVVVRFNFLFIHHFN*QLAQPVGIG+LNCI+INA+ QV HFTSNANSLPN+L FLKDPFF+QTPSTK  VCD+ + S KANHI E FM S +P*SAV AH+IA K  * G
Subject   6145  THKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVVRFNFLFIHHFN*QLAQPVGIGHLNCIIINAIFQVAHFTSNANSLPNQLRFLKDPFFEQTPSTKCRVCDELYFSLKANHIQETFMLSFKP*SAVCAHIIARKRN*LG  6621

Range 4: 6146 to 6622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
287.9 bits(622) 0.0 130/159(82%) 0/159(0%) Minus/Minus
Query       33  HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR  509
                HPQTQT*TKL*LSYS**S++AKHLRPNL*LQT QKLS SSCAYF* GTAHSCSALQLPLHSSFQLTTRP CRHR PQLH+YQC+ PG PFHEQCKFSPK   VS*RSLL*TNTIHK  GL*+I  * *GKSY G LH Q *ALICC RT HR Q Q+TR
Subject   6146  HPQTQT*TKL*LSYS**SNNAKHLRPNL*LQTIQKLSISSCAYF*PGTAHSCSALQLPLHSSFQLTTRPTCRHRTPQLHNYQCNFPGCPFHEQCKFSPKSTEVS*RSLL*TNTIHKM*GL*RIVL*P*GKSYSGNLHAQF*ALICCLRTYHRPQTQLTR  6622

Range 5: 6147 to 6620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
281.5 bits(608) 0.0 130/158(82%) 0/158(0%) Plus/Plus
Query       34  RVICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCG  507
                RV C C R*+VR QQIKA*+* *R P+YDLP* *  I HKP  LWMVFV RRDL*ET   LGENLHCS*NG PG+LH**LCN*G+LCLQ GRVVN*NDE*RGS*SALQLCAVP *K*AQDE+LNFW+V*SYRLGLKCLA  DYYE*LS*SFVYV*VCG
Subject   6147  RVNCVCGR*YVRKQQIKA*N*A*RFPEYDLP*G*STIRHKPYILWMVFVQRRDL*ETSVDLGENLHCS*NGQPGKLH**LCN*GVLCLQVGRVVN*NDE*RGS*SALQLCAVPG*K*AQDEMLNFWIV*SYRLGLKCLALLDYYE*LS*SFVYV*VCG  6620

Range 6: 6146 to 6430 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
157.8 bits(338) 0.0 70/95(74%) 0/95(0%) Plus/Plus
Query       33  PGHLLLQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWASCQ  317
                P  L L+AM CA TAD*GL+L+MK S*I*FAL+L+   SQT  FVDGVC KKGSLRN + FGREFALLVKW TW+ ALI MQLR PMPTGWASCQ
Subject   6146  PSQLRLRAMICAQTAD*GLKLSMKVS*I*FALRLKYNSSQTLHFVDGVCSKKGSLRNLS*FGREFALLVKWATWKIALIIMQLRCPMPTGWASCQ  6430

Range 7: 6473 to 6568 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
59.7 bits(124) 0.0 27/32(84%) 0/32(0%) Plus/Plus
Query      360  VCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV  455
                VCGS LEISTR* AQFL CLKL*IRP*VFG++
Subject   6473  VCGSWLEISTR*DAQFLDCLKL*IRP*VFGII  6568

Grapevine Rupestris stem pitting associated virus, complete genome

Sequence ID: AF026278.1 Length: 8725 Number of Matches: 7

Range 1: 6142 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
362.1 bits(784) 0.0 148/160(92%) 0/160(0%) Plus/Plus
Query       29  GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG  508
                G  S AFAGDDMCAN RLR KTEHEGFLNMICLKAKV FV+NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALSTFEFVG
Subject   6142  GSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSTFEFVG  6621

Range 2: 6141 to 6620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
266.8 bits(576) 0.0 125/160(78%) 0/160(0%) Minus/Minus
Query       28  PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP  507
                PTNSNVD ALTKLFII+  CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+D+SPS  A*+TSIA*LS+QFSRLPIS AM I SQ++ GFLKIPSLNKHHPQ VG  TN TLALRQI+FR PSCSVL  NL LAHMSSPA A D  P
Subject   6141  PTNSNVDNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMDSSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQIN*GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLRLAHMSSPANAIDSEP  6620

Range 3: 6160 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.0 bits(356) 0.0 76/154(49%) 0/154(0%) Minus/Minus
Query       47  THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACK  508
                T+KLK  Q FN*+IHN   MPNT*GLI  FK   N*A HL+L+ + E +T+++  +F   HHFN  L+QPV IG L  I++N +LQVTH  SNA  LP+ L  L+DPF K TPS +  + +K +L  KANH+ +  M   +P  ++S HVI CK
Subject   6160  TYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQPVRIGDLYRIIVNTILQVTHLPSNAYPLPD*LRLLEDPFLK*TPSAECGIGNKLNLGLKANHVQKTLMLCFKPQPSISTHVITCK  6621

Range 4: 6162 to 6617 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
138.1 bits(295) 0.0 75/152(49%) 0/152(0%) Plus/Plus
Query       49  CRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VC  504
                CR *HV * ++ A*+  *   ++DLP*  G++C + + L MVF+* RDL E   +LG ++HC  +G*PGEL+* LC+ G+LC+ AGR ++*ND+   S   L LC +   + A DE+LNF  +*S  LGLK LA  +YYE* S*S V +*VC
Subject   6162  CR**HVC*SKVAA*NRA*GFSEHDLP*GQGSVCFQSHILRMVFI*GRDLQEASINLGADMHC*GDG*PGELY*QLCDRGLLCVPAGRAIH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVNI*VC  6617

Range 5: 6146 to 6622 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
112.9 bits(240) 0.0 73/159(46%) 0/159(0%) Minus/Minus
Query       33  HPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTR  509
                H QTQ  T L*L+YS* S++AK+LRPN  LQ   KLS SS A  *    H+ +   L   SSFQ    PA  HR P  H+ Q +SPGYP   QC  +P+ +  S*RSL * NTI +     Q  P  *GKS     H   *A    * TCH LQ  +T+
Subject   6146  HLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWIALPAGTHRRPLSHNCQYNSPGYPSP*QCISAPRLIEAS*RSLP*INTIRRMWDWKQTEPWP*GKSCSENPHALF*AATFD*HTCHHLQMLLTQ  6622

Range 6: 6161 to 6424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
84.0 bits(177) 0.0 43/88(49%) 0/88(0%) Plus/Plus
Query       48  LQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS  311
                LQ MTC L    GL+ +M+  * *FAL+ R  L       DGV L+KGS R+ N  G  +ALL +WVTWR  L  M+ R PM TGW S
Subject   6161  LQVMTCVLIEGCGLKQSMRVF*T*FALRPRFSLFPIPHSADGVYLRKGSSRSLN*SGSGYALLGRWVTWRIVLTIMR*RSPMRTGWES  6424

Range 7: 6497 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.4 bits(60) 0.0 16/25(64%) 0/25(0%) Plus/Plus
Query      384  STR*GAQFLGCLKL*IRP*VFGMV*  458
                S R* AQF   LK  IRP*VFG++*
Subject   6497  SIR*DAQFQAYLKRLIRP*VFGII*  6571

Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome

Sequence ID: JX559646.1 Length: 8726 Number of Matches: 7

Range 1: 6142 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
361.2 bits(782) 0.0 146/160(91%) 0/160(0%) Plus/Plus
Query       29  GPGSFAFAGDDMCANSRLRPKTEHEGFLNMICLKAKVLFVTNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVG  508
                G  S AFAGDDMCAN RLR KTEHEGFLNMICLKAKV FV+NPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEA+D*ALS+WH + IMNNLVKALSTFEF+G
Subject   6142  GSESIAFAGDDMCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAVD*ALSIWHCLSIMNNLVKALSTFEFIG  6621

Range 2: 6141 to 6620 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
274.2 bits(592) 0.0 127/160(79%) 0/160(0%) Minus/Minus
Query       28  PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQMSWGFLKIPSLNKHHPQKVGFVTNSTLALRQIIFRNPSCSVLGLNLLLAHMSSPAKANDPGP  507
                P NS VD ALTKLFII+  CQ LKA*S ASN PEIEHLILCLFLTRN TQL*CASTSSS IIS+D+SP+L A*DTSIA*LSMQFSRLPIS AM I SQ+S GFLKIPSLNKHHPQ VG  TN TLALRQI+FR PSCSVL  NLLLAH+SSPA A D  P
Subject   6141  PINSKVDNALTKLFIILKQCQILKA*STASNRPEIEHLILCLFLTRNLTQL*CASTSSSVIISMDSSPNLYA*DTSIA*LSMQFSRLPISLAMHIRSQIS*GFLKIPSLNKHHPQNVGLETN*TLALRQIMFRKPSCSVLSRNLLLAHISSPANAIDSEP  6620

Range 3: 6160 to 6621 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
166.9 bits(358) 0.0 78/154(51%) 0/154(0%) Minus/Minus
Query       47  THKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVRFNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLPNELGFLKDPFFKQTPSTKSWVCDK*HLSFKANHI*EPFMFSLRP*SAVSAHVIACK  508
                T+K +  Q FN +IHN  TMPNT*GLI  FK   N*APHL+L+ N*EPHT+VV  + L  HHF+  L Q + IG+L  I+INAVL + H +  A SLPN L FL+D   K  PST+  V +K +L  KA+H+ E  M   +P  +VS H+I CK
Subject   6160  TYKFEG*QCFNQIIHNTQTMPNT*GLINRFK*A*N*APHLMLVPN*EPHTIVVCLHLLLCHHFDG*LTQSICIGHLYRIIINAVL*IAHLSGYAYSLPN*LRFLEDSLLK*APSTECGVRNKLNLGLKADHVQETLMLCFKPQPSVSTHIIPCK  6621

Range 4: 6138 to 6602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.2 bits(315) 0.0 78/155(50%) 0/155(0%) Plus/Plus
Query       25  FGSRVICFCRR*HVR*QQIKA*D*T*RVPKYDLP*S*GAICHKPNFLWMVFV*RRDL*ETPTHLGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*SALQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFV  489
                +G RV   CR *+V *Q++ A*+  *  P++DLP*  G++C  P+ LWMV +*  +L ET T+LG N+H   +G   ELH**LC+ G+LC+  G  ++ ND+  G    LQLC VPS*+ A DEVLNF  +*S  LGLK LA  +YYE*  *S V
Subject   6138  YGFRVNSVCRG*YVC*QKVAA*NRA*GFPEHDLP*GQGSVCF*PHILWMVLI*GGNLQETSTNLGANMHSQRDGQSRELH**LCDRGVLCI*IG*AIHRNDDRGGGGGTLQLCEVPS*EQA*DEVLNFRPI*SG*LGLKYLALFEYYE*FG*SIV  6602

Range 5: 6140 to 6601 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
126.6 bits(270) 0.0 75/154(49%) 0/154(0%) Minus/Minus
Query       27  TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSALQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSPK*VGVS*RSLL*TNTIHKKLGL*QIAP*L*GKSYLGTLHVQS*ALICC*RTCHRLQKQMTRDP  488
                T L* +YS* S++AK+LRPN  LQ   KLSTSS A  *LGT+H+CS    P  SSF+    P   HR P  H+YQCSS   P    C F+PK V VS*R   * +TIH+  G  Q  P  *G+S  G  H   *A   C* T H LQ  +T +P
Subject   6140  TML*PNYS*YSNNAKYLRPNQPLQIGLKLSTSSYACS*LGTSHNCSVPPPPPLSSFRWIAHPIYMHRTPLSHNYQCSSLDCPSLWLCIFAPKLVEVS*RFPP*ISTIHRMWG*KQTEPWP*GRSCSGNPHALF*AATFC*HTYHPLQTLLTLNP  6601

Range 6: 6161 to 6424 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
73.0 bits(153) 0.0 41/88(47%) 0/88(0%) Plus/Plus
Query       48  LQAMTCALTAD*GLRLNMKGS*I*FALKLRCYLSQTQLFVDGVCLKKGSLRNPNSFGREFALLVKWVTWRTALITMQLRYPMPTGWAS  311
                LQ M C LT   GL+ +M+ S* * AL+ R  L  T   VDG  L++ S RN N FG E+A   +W   RTALI M+ R PM   W S
Subject   6161  LQGMICVLTEGCGLKQSMRVS*T*SALRPRFSLFLTPHSVDGAYLRRESSRNLN*FGSEYA*PERWAI*RTALIIMR*RCPMHIDWVS  6424

Range 7: 6479 to 6571 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 22/31(71%) 0/31(0%) Plus/Plus
Query      366  GS*LEISTR*GAQFLGCLKL*IRP*VFGMV*  458
                GS*L  S R*GAQF   LK  IRP*VFG+V*
Subject   6479  GS*LGTSIR*GAQFQAYLKRLIRP*VFGIV*  6571

Nucleotide Sequence (472 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
48
96
144
192
240
288
336
384
432
472

Descriptions

Alignments

Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome

Sequence ID: KR054734.1 Length: 8753 Number of Matches: 8

Range 1: 4021 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
329.1 bits(712) 0.0 136/149(91%) 0/149(0%) Minus/Plus
Query        3  GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  449
                G+ G  SDEKFNDSKPWL+G+STSDIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDD CKV KAGKSKKEGWDVVTFEVFLRK+  LKAGHCVIFDEVQLFPPGYIDLCLL IRSDAFISLAGDPCQ
Subject   4021  GLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKKEGWDVVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQ  4467

Range 2: 4047 to 4469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
225.6 bits(486) 0.0 111/141(79%) 0/141(0%) Plus/Minus
Query        1  L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF  423
                L*QGSPAREMKASLRM  R +S+*PGGNS*TSSK+TQ PAFR   FLR TS VTTSQPSFFDLPAF TL  SSIS+SLLIEFA+A LGET VTN PSDLF+KLLYRKL PAP VPSTTVNS  L+SEVD P S G ESLNF
Subject   4047  L*QGSPAREMKASLRMVNRQRSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTTSQPSFFDLPAFATLQLSSISKSLLIEFARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLISEVDIPESHGLESLNF  4469

Range 3: 4039 to 4257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
95.0 bits(201) 0.0 43/73(59%) 0/73(0%) Plus/Minus
Query      213  IIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT  431
                IIHF++ F+*IC*SP  *+K Y+F+FR LH+ALV +  +S K  KH+CQ S FD+RS*+S +P L IVK LIT
Subject   4039  IIHFQVSFN*IC*SPSG*NKGYEFAFRPLHKALVQKAFTSSKGAKHDCQLSRFDIRS*YS*EPWLGIVKLLIT  4257

Range 4: 4300 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
65.2 bits(136) 0.0 29/56(52%) 0/56(0%) Plus/Minus
Query        3  LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIP  170
                LT ITSKRNES+T+   +T + +  RE LN IK+ AM  L  C+FPK++FK +N+P
Subject   4300  LTGITSKRNESITSYG*QTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFKGHNVP  4467

Range 5: 4020 to 4400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
133.0 bits(284) 0.0 63/127(50%) 0/127(0%) Minus/Plus
Query       70  GCVWEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL  450
                G  W  K**E+*RF+A+A  ++NF*+Q  R+DS AW++W W +  +QEL+EE+*R+I N+C T  G SKFN K   NG**+   +G Q+K+  LG C +*S  *E+ +P+G  LR+ ** S +PS L
Subject   4020  GLNWCDK**EV*RFQAMALRNINF*YQISRVDSRAWHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSKFN*KRLGNG**LQSGKGWQIKKRRLGRCDL*SVS*ENCKPEGRPLRHF**GSTVPSRL  4400

Range 6: 4019 to 4468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 74/150(49%) 0/150(0%) Plus/Minus
Query        2  FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQTHP  451
                FD+DHQQEK*K H+    D    + EG  E HQ+ RN  P GL  S*  LQ  Q P+   L C P     +HPF   F*LNLL+P  V+Q L+I LQ SS*SSC  + +Q Q  QA+LS L +* QKL   +A A NR* SHH   Q  P
Subject   4019  FDRDHQQEK*KHHFVWLTDKGQYSLEGTVEPHQK*RNGLPSGLQFS*ETLQRSQRPNLLFLICQPLPLCNYHPFPSLF*LNLLEPFWVKQRLRICLQTSS*SSCTESFYQLQRCQARLSTLEI*YQKLIFLRAMAWNR*TSHHLSHQLSP  4468

Range 7: 4040 to 4189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
51.9 bits(107) 0.0 29/50(58%) 0/50(0%) Minus/Plus
Query      281  VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN  430
                VMR+LTI S G  E QLL SN E+*Q CL  L L +   TRA *R LK N
Subject   4040  VMRSLTIPSHGSQEYQLLISNLES*QSCLAPLELVKAFCTRAL*RGLKAN  4189

Range 8: 4223 to 4393 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.3 bits(75) 0.0 27/57(47%) 0/57(0%) Minus/Plus
Query       77  QIQSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSL  247
                QIQ K   KWM+  +  R A+Q+++ G L  LK  LGK Q *R  IA  LM+F+ SL
Subject   4223  QIQLKETWKWMIVAKWQRLANQKKKVGTL*PLKCFLGKLQT*RQAIASFLMRFNCSL  4393

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 8

Range 1: 4021 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
342.9 bits(742) 0.0 144/149(97%) 0/149(0%) Minus/Plus
Query        3  GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  449
                G+ G  SDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ
Subject   4021  GLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  4467

Range 2: 4047 to 4469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
291.6 bits(630) 0.0 137/141(97%) 0/141(0%) Plus/Minus
Query        1  L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF  423
                L*QGSPAREMKASLR+TRRH+SM*PGGNS*TSSKITQ*PAFRPVTFLRKTS VTTSQPSFFDLPAFTTLHSSSISRSLLIEFA+ARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF
Subject   4047  L*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF  4469

Range 3: 4029 to 4400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
272.8 bits(589) 0.0 113/124(91%) 0/124(0%) Minus/Plus
Query       70  WEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL  441
                W  K**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AG SKFNQKG RNG* V*G EGRQ+KEGGLGCCY+*S P*ES+RPKGWSLR+L**SSAIPSWL
Subject   4029  WRDK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQKGPRNG*RV*GGEGRQIKEGGLGCCYL*SLP*ESYRPKGWSLRDL**SSAIPSWL  4400

Range 4: 4039 to 4254 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
164.6 bits(353) 0.0 70/72(97%) 0/72(0%) Plus/Minus
Query      216  IHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT  431
                IHF +PFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT
Subject   4039  IHF*VPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT  4254

Range 5: 4297 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 48/57(84%) 0/57(0%) Plus/Minus
Query        3  LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPA  173
                LTRITSKR+ESVT ++KKT*I VTRRE*LNFIKD+AMTSL*AC+FPKE+FK NNIPA
Subject   4297  LTRITSKRDESVTADNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNNIPA  4467

Range 6: 4022 to 4468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
249.0 bits(537) 0.0 130/149(87%) 0/149(0%) Plus/Minus
Query        2  FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQTH  448
                FDKDHQQE+*KRH  *QEDI+ CNQEGIAELHQR RNDQPLGL*LS*G+LQ *QHPSPPSL CLPS PYT HPF  PF*LNLL+PA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHH   Q++
Subject   4022  FDKDHQQER*KRHCG*QEDIDRCNQEGIAELHQRSRNDQPLGL*LS*GRLQR*QHPSPPSLICLPSPPYTLHPFLGPF*LNLLEPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHLSRQSN  4468

Range 7: 4040 to 4189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.8 bits(242) 0.0 50/50(100%) 0/50(0%) Minus/Plus
Query      281  VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN  430
                VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN
Subject   4040  VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN  4189

Range 8: 4223 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.2 bits(173) 0.0 54/63(86%) 0/63(0%) Minus/Plus
Query       59  QIQSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY  247
                QIQSKG  KWM SVR *RQA+QRRRAGMLL LK SLGK QA*RLVIA*SLMKFSYSLLVT IY
Subject   4223  QIQSKGT*KWMKSVRW*RQANQRRRAGMLLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIY  4411

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9

Range 1: 4021 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
339.2 bits(734) 0.0 143/149(96%) 0/149(0%) Minus/Plus
Query        3  GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  449
                G+ G  SDEKFNDSKPWLAGVSTS IKQRELTVVLGTFGAGKSFL+KSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ
Subject   4021  GLTGVISDEKFNDSKPWLAGVSTSGIKQRELTVVLGTFGAGKSFLHKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  4467

Range 2: 4047 to 4469 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
284.7 bits(615) 0.0 135/141(96%) 0/141(0%) Plus/Minus
Query        1  L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF  423
                L*QGSPAREMKASLRMTRRH+SM*PGGNS TSSKITQ*PAFRPVTFLRKTS VTTSQPSFFDLPAFTTLHSSSISRSLLIEFA+ARLGETNVTNFPSDLFMKLL RKLFPAPNVPSTTVNSLCLM EVDTPASQGFESLNF
Subject   4047  L*QGSPAREMKASLRMTRRHRSM*PGGNSWTSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLCRKLFPAPNVPSTTVNSLCLMPEVDTPASQGFESLNF  4469

Range 3: 4029 to 4400 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
243.9 bits(526) 0.0 105/124(85%) 0/124(0%) Minus/Plus
Query       70  WEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL  441
                W  K**EI*RFKALACWSV F HQTKRIDS AW+IWGWKEFP QELHEEI*RKICNICLT*AG SKFNQKG  NG**V*GSEGRQ+KEGGLGC Y+*S  *ES+RPKGWSLR+L**S AIP WL
Subject   4029  WRDK**EI*RFKALACWSVYFWHQTKRIDSRAWHIWGWKEFPTQELHEEI*RKICNICLT*AGSSKFNQKGPGNG**V*GSEGRQIKEGGLGCRYL*SLS*ESYRPKGWSLRDL**SPAIPPWL  4400

Range 4: 4039 to 4257 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
160.5 bits(344) 0.0 67/73(92%) 0/73(0%) Plus/Minus
Query      213  IIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLIT  431
                IIHF++PFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKC KH+CQFSLFD RS HSSKPRL*IVKFLIT
Subject   4039  IIHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCAKHDCQFSLFDARSRHSSKPRL*IVKFLIT  4257

Range 5: 4297 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
102.8 bits(218) 0.0 46/57(81%) 0/57(0%) Plus/Minus
Query        3  LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPA  173
                LTRITSKR+ESVT NDKKT*I VTR E*L+FIKD+AMTSL*AC+FPK++FK N+IPA
Subject   4297  LTRITSKRDESVTANDKKT*IDVTRGE*LDFIKDHAMTSL*ACNFPKKDFKGNDIPA  4467

Range 6: 4028 to 4468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
234.3 bits(505) 0.0 125/147(85%) 0/147(0%) Plus/Minus
Query        2  FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQ  442
                FDKDHQQE+*KRH E*QEDI+ CNQ GIA LHQR RNDQPLGL*LS* +LQ *+HPSPPSL CLPSLPYTHHPF  PF*LNLL+PA*VRQMLQIFLQISS*SSC+GNSFQPQM QA+LSILFV*CQK TLQQAKALNR*ISHH   Q
Subject   4028  FDKDHQQER*KRHCE*QEDIDRCNQGGIAGLHQRSRNDQPLGL*LS*ERLQR*RHPSPPSLICLPSLPYTHHPFPGPF*LNLLEPA*VRQMLQIFLQISS*SSCVGNSFQPQMCQARLSILFV*CQK*TLQQAKALNR*ISHHLSRQ  4468

Range 7: 4040 to 4189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.7 bits(220) 0.0 46/50(92%) 0/50(0%) Minus/Plus
Query      281  VMRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN  430
                VMRNLTIQSLGLLEC LL SNKEN*Q CL HLGLERVSYTRAS*RDLKEN
Subject   4040  VMRNLTIQSLGLLECLLLASNKEN*QSCLAHLGLERVSYTRAS*RDLKEN  4189

Range 8: 4301 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
52.8 bits(109) 0.0 29/37(78%) 0/37(0%) Minus/Plus
Query       59  GMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY  169
                GM L LK  LGK QA*RLVIA*SLMK SYS LVT IY
Subject   4301  GMSLPLKSFLGKLQA*RLVIA*SLMKSSYSPLVTSIY  4411

Range 9: 4223 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 12/14(86%) 0/14(0%) Minus/Plus
Query      206  QIQSKGISKWMMSV  247
                QIQSKG  KWMMSV
Subject   4223  QIQSKGTWKWMMSV  4264

Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome

Sequence ID: KR528585.1 Length: 8595 Number of Matches: 8

Range 1: 4003 to 4449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
338.3 bits(732) 0.0 142/149(95%) 0/149(0%) Minus/Plus
Query        3  GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  449
                G+ G  SDEKFNDS+PWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMD+ CKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ
Subject   4003  GLTGVISDEKFNDSRPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEGCKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  4449

Range 2: 4029 to 4451 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
290.2 bits(627) 0.0 136/141(96%) 0/141(0%) Plus/Minus
Query        1  L*QGSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF  423
                L*QGSPAREMKASLR+TRRH+SM*PGGNS*TSSKITQ*PAFRPVTFLRKTS VTTSQPSFFDLPAFTTLH SSISRSLLIEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQG ESLNF
Subject   4029  L*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHPSSISRSLLIEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGLESLNF  4451

Range 3: 4011 to 4382 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
246.7 bits(532) 0.0 104/124(84%) 0/124(0%) Minus/Plus
Query       70  WEGK**EI*RFKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGCCYI*SFP*ESHRPKGWSLRNL**SSAIPSWL  441
                W  K  EI* FKALACWSVNF H TKRIDSC WYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKG  +G* V*G EGRQ+KEGGLGCC++*SF *ES+RPKGWSLR+L**SSAIP WL
Subject   4011  WCDKRREI**FKALACWSVNFRH*TKRIDSCTWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGPGDG*GV*GGEGRQIKEGGLGCCHL*SFS*ESYRPKGWSLRDL**SSAIPPWL  4382

Range 4: 4024 to 4239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
150.9 bits(323) 0.0 62/72(86%) 0/72(0%) Plus/Minus
Query      213  IIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLI  428
                +IH ++PFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTK+NCQFSLF+V S*HSSKPR *I+KFL+
Subject   4024  LIHLQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKYNCQFSLFNVGS*HSSKPRP*IIKFLV  4239

Range 5: 4279 to 4449 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
105.1 bits(223) 0.0 47/57(82%) 0/57(0%) Plus/Minus
Query        3  LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPA  173
                LTRITSKR+ESVT N+KKT*I VTR E*LNFIKD+AMTSL*AC+FPK+NFK +NIPA
Subject   4279  LTRITSKRDESVTANNKKT*IDVTRGE*LNFIKDHAMTSL*ACNFPKKNFKGDNIPA  4449

Range 6: 4010 to 4450 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
231.1 bits(498) 0.0 125/147(85%) 0/147(0%) Plus/Minus
Query        2  FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQRLRNDQPLGL*LS*GKLQM*QHXXXXXXXXXXXXXYTHHPFRDPF*LNLLKPA*VRQMLQIFLQIXXXXXCIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISHHFPSQ  442
                FDKDHQQE+*KRH E*QEDI+ CNQ GIAELHQR RNDQPLGL*LS* KLQ *QHPSPPSL CLPS PYT HP   PF*LNLLKPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQ QLSILFV*C+KLTLQQAKALN *IS     Q
Subject   4010  FDKDHQQER*KRHCE*QEDIDRCNQGGIAELHQRSRNDQPLGL*LS*EKLQR*QHPSPPSLICLPSPPYTPHPSPGPF*LNLLKPA*VRQMLQIFLQISS*SSCIGNSFQPQMYQVQLSILFV*CRKLTLQQAKALNH*ISRRLSHQ  4450

Range 7: 4028 to 4171 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
94.1 bits(199) 0.0 43/48(90%) 0/48(0%) Minus/Plus
Query      281  RNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN  424
                RNL IQ LGLLECQL T NKEN*QL LVHLGLERVSYTRAS*RDLKEN
Subject   4028  RNLMIQGLGLLECQLPTLNKEN*QLYLVHLGLERVSYTRAS*RDLKEN  4171

Range 8: 4205 to 4393 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
74.4 bits(156) 0.0 50/63(79%) 0/63(0%) Minus/Plus
Query       59  QIQSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY  247
                QIQSKG  +WM  VR *RQA+QRRRAGML  LKF LGK QA*RLVIA*SLMKFSYS LVT IY
Subject   4205  QIQSKGTWRWMRGVRW*RQANQRRRAGMLSPLKFFLGKLQA*RLVIA*SLMKFSYSPLVTSIY  4393

Grapevine rupestris stem pitting associated virus isolate GRSPaV LSL, complete genome

Sequence ID: KR054735.1 Length: 8754 Number of Matches: 9

Range 1: 4021 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
330.1 bits(714) 0.0 136/149(91%) 0/149(0%) Minus/Plus
Query        3  GVFGRGSDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQ  449
                G+ G  SDEKFNDSKPWL+G+ST DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDD+CKV KAGKSKKEGWDVVTFEVFLRKV GLKAGHC+IFDEVQLFPPGYIDLCLL IRSDAFISLAGDPCQ
Subject   4021  GLTGVISDEKFNDSKPWLSGISTKDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDDCKVAKAGKSKKEGWDVVTFEVFLRKVDGLKAGHCIIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQ  4467

Range 2: 4047 to 4460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
224.7 bits(484) 0.0 111/138(80%) 0/138(0%) Plus/Minus
Query       10  GSPAREMKASLRMTRRHKSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSNVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNF  423
                GSPAR+MKASLR+  +HKSM*PGGNS*TSSK+ Q PAF+P TFLR TS VTTS PSF DLPAF TL SSSISRSLLIE AKARLGET VTNFPSDLFMKLL RKLFPAP VPSTTVNSL  +S VD P S GFESLNF
Subject   4047  GSPARDMKASLRIVSKHKSM*PGGNS*TSSKMIQWPAFKPSTFLRNTSKVTTSHPSFLDLPAFATLQSSSISRSLLIELAKARLGETKVTNFPSDLFMKLL*RKLFPAPKVPSTTVNSLGFISFVDIPESHGFESLNF  4460

Range 3: 4042 to 4467 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
106.9 bits(227) 0.0 62/142(44%) 0/142(0%) Plus/Minus
Query        3  LTRITSKRNESVTTNDKKT*IYVTRRE*LNFIKDYAMTSL*ACDFPKENFKCNNIPAXXXXXXXXXXXXXIIHFEIPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKCTKHNCQFSLFDVRS*HSSKPRL*IVKFLI  428
                L  +TSKR E +T N ++T*I VTR E*LN +K+  +  L   + P+++ K  +IP+L L  A   +LT+IIHF+I FD*+ *S    ++  K S    HEALV ET S PK  +HNCQ S   +   +S +P L*I++  I
Subject   4042  LAWVTSKRYEGITANCEQT*INVTRGE*LNLVKNDTVACLQTINLPEKHLKSYHIPSLFLRFASFCHLTIIIHFQISFD*VG*SSSWGNESNKLSL*PFHEALVKETFSCPKSPEHNCQLSWLYIFRGYSGEPWL*IIELFI  4467

Range 4: 4059 to 4307 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 39/83(47%) 0/83(0%) Minus/Plus
Query      163  FKALACWSVNF*HQTKRIDSCAWYIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQKGSRNG**V*GSEGRQVKEGGLGC  411
                FKA+A  +++  ++ KR+DSCA   WG K+FP+QELHE++  K+C        FS+ NQK S NG**+*G +  Q+ E G+GC
Subject   4059  FKAMALRNIHERYKAKRVDSCARDFWGRKKFPLQELHEKVRGKVCYFRFPKTSFSQLNQKRSGNG**L*GGKSWQI*ERGMGC  4307

Range 5: 4367 to 4468 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 18/34(53%) 0/34(0%) Plus/Minus
Query        2  FDKDHQQEK*KRHYE*QEDINLCNQEGIAELHQR  103
                F   HQQE *+ H E   +IN CNQ GIAE  Q+
Subject   4367  FGMGHQQEI*RHHCEL*ANINQCNQGGIAEPRQK  4468

Range 6: 4043 to 4159 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
32.2 bits(64) 0.0 17/39(44%) 0/39(0%) Plus/Minus
Query      311  CIGNSFQPQMYQAQLSILFV*CQKLTLQQAKALNR*ISH  427
                C GN F PQ  +AQLS L         ++A ALN *  H
Subject   4043  CKGNFFLPQKSRAQLSTLLALYLSWIFRRAMALNH*TFH  4159

Range 7: 4217 to 4264 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.6 bits(56) 0.0 11/16(69%) 0/16(0%) Plus/Minus
Query      206  YTHHPFRDPF*LNLLK  253
                Y HHPF D F*L+ LK
Subject   4217  YNHHPFPDLF*LSWLK  4264

Range 8: 4043 to 4189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
39.6 bits(80) 0.0 22/49(45%) 0/49(0%) Minus/Plus
Query      281  MRNLTIQSLGLLECQLLTSNKEN*QLCLVHLGLERVSYTRAS*RDLKEN  427
                M++  IQS G  E      ++E+*QLC   LG E+VS+TRAS*+  +E+
Subject   4043  MKSSMIQSHGSPEYPRKI*SQES*QLCSGLLGQEKVSFTRAS*KGQRES  4189

Range 9: 4229 to 4411 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.2 bits(77) 0.0 29/61(48%) 0/61(0%) Minus/Plus
Query       59  QSKGISKWMMSVXXXXXXXXXXXAGMLLHLKFSLGKSQA*RLVIA*SLMKFSYSLLVT*IY  241
                QSK I KWMM VR  + A+ R+R GM   L+   G+   *R      L +FSYS LVT IY
Subject   4229  QSKEIWKWMMIVRWQKLANLRKRDGMW*LLRCFSGRLMV*RQATVSFLTRFSYSPLVTLIY  4411

Nucleotide Sequence (151 letters)

Query ID:ds2016-55_46
Query definition:No definition line
Query length:439
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 9 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
16
32
48
64
80
96
112
128
144
151

Descriptions

Alignments

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1

Sequence ID: AB277783.1 Length: 2876 Number of Matches: 5

Range 1: 881 to 994 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.5 bits(189) 0.0 36/38(95%) 0/38(0%) Minus/Minus
Query        2  AGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAI  115
                AGRKGYETLVLSDKFSY*T FTTTRNA+NNNWKSEHAI
Subject    881  AGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAI  994

Range 2: 881 to 997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
89.0 bits(188) 0.0 38/39(97%) 0/39(0%) Plus/Plus
Query        2  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL  118
                YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAG+
Subject    881  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGV  997

Range 3: 882 to 992 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
77.1 bits(162) 0.0 35/37(95%) 0/37(0%) Minus/Minus
Query        3  RP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY  113
                RP*RL*NSRPQ*QVLLLN FYHYQER EQQLEI*ARY
Subject    882  RP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARY  992

Range 4: 882 to 995 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
60.2 bits(125) 0.0 36/38(95%) 0/38(0%) Plus/Plus
Query        3  IACSDFQLLFIAFLXXXXXXXXENLSLRTRVS*PLRPA  116
                IACSDFQLLF AFLVVVK V**ENLSLRTRVS*PLRPA
Subject    882  IACSDFQLLFTAFLVVVKAV**ENLSLRTRVS*PLRPA  995

Range 5: 880 to 1014 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.1 bits(116) 0.0 37/45(82%) 0/45(0%) Plus/Plus
Query        1  L*RAQIXXXXXXXXXXX*K*FNKRTCH*GREFHSLYGRPRSQTHP  135
                L*RAQISSCCS RSW*W*K FNKRTCH*GREFHSLYGR    + P
Subject    880  L*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSRHSQP  1014

Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome

Sequence ID: KX274275.1 Length: 8724 Number of Matches: 5

Range 1: 6625 to 6738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 37/38(97%) 0/38(0%) Minus/Minus
Query        2  AGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAI  115
                AGRKGYE LVLSDKFSY*TTFTTTRNAMNNNWKSEHAI
Subject   6625  AGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAI  6738

Range 2: 6625 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.7 bits(185) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        2  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL  118
                YSVLRFPVVVHSVPGSGKSSLIRELVTEDE+FIAFTAG+
Subject   6625  YSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGV  6741

Range 3: 6626 to 6757 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
87.2 bits(184) 0.0 39/44(89%) 0/44(0%) Minus/Minus
Query        3  GCVWDRGRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY  134
                G V    RP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY
Subject   6626  GWVCQERRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY  6757

Range 4: 6626 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 37/38(97%) 0/38(0%) Plus/Plus
Query        3  IACSDFQLLFIAFLXXXXXXXXENLSLRTRVS*PLRPA  116
                IACSDFQLLFIAFLVVVKVV**ENLSLRTR+S*PLRPA
Subject   6626  IACSDFQLLFIAFLVVVKVV**ENLSLRTRIS*PLRPA  6739

Range 5: 6675 to 6758 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 23/28(82%) 0/28(0%) Plus/Plus
Query       52  *K*FNKRTCH*GREFHSLYGRPRSQTHP  135
                *K*FNKRTCH*GREFHSLYGR    T P
Subject   6675  *K*FNKRTCH*GREFHSLYGRRS*HTQP  6758

Rupestris stem pitting associated virus strain Syrah, complete genome

Sequence ID: AY368590.1 Length: 8742 Number of Matches: 4

Range 1: 6625 to 6741 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
88.6 bits(187) 0.0 37/39(95%) 0/39(0%) Plus/Plus
Query        2  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL  118
                YSVLRFPVVVHSVPGSGKSSLIREL+TEDESFIAFTAG+
Subject   6625  YSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGV  6741

Range 2: 6625 to 6738 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
78.0 bits(164) 0.0 31/38(82%) 0/38(0%) Minus/Minus
Query        2  AGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAI  115
                AGR+ YETLV S++ SY TTFTTTRNAMNNNWKSEHAI
Subject   6625  AGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAI  6738

Range 3: 6626 to 6736 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.7 bits(148) 0.0 32/37(86%) 0/37(0%) Minus/Minus
Query        3  RP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARY  113
                RP*+L*NSR Q*  LL NYFYHYQERYEQQLEI*ARY
Subject   6626  RP*KL*NSRLQ**ALLSNYFYHYQERYEQQLEI*ARY  6736

Range 4: 6626 to 6739 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.0 bits(94) 0.0 32/38(84%) 0/38(0%) Plus/Plus
Query        3  IACSDFQLLFIAFLXXXXXXXXENLSLRTRVS*PLRPA  116
                IACSDFQLLFIAFLVVVKVV**E+  L+TRVS*  RPA
Subject   6626  IACSDFQLLFIAFLVVVKVV**ESSLLKTRVS*LSRPA  6739

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OE8

Sequence ID: AB277784.1 Length: 2876 Number of Matches: 2

Range 1: 881 to 997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 32/39(82%) 0/39(0%) Plus/Plus
Query        2  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL  118
                +SVL+FPVV+HSVPGSGKSSLIREL++EDESF+AFTAG+
Subject    881  FSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGV  997

Range 2: 887 to 985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
47.3 bits(97) 0.0 20/33(61%) 0/33(0%) Minus/Minus
Query        8  KGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEH  106
                + +ETLVL D   Y*TT TTTR+ M NNWK E+
Subject    887  ESHETLVL*D*LPY*TTLTTTRHTMYNNWKFEY  985

Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hiz6

Sequence ID: AB277786.1 Length: 2876 Number of Matches: 2

Range 1: 881 to 997 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
82.6 bits(174) 0.0 32/39(82%) 0/39(0%) Plus/Plus
Query        2  YSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGL  118
                +SVL+FPVV+HSVPGSGKSSLIREL++EDESF+AFTAG+
Subject    881  FSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGV  997

Range 2: 887 to 985 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 17/33(52%) 0/33(0%) Minus/Minus
Query        8  KGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEH  106
                K ++  VL D+  Y*TTF TT + +N+NWK EH
Subject    887  KSHKAFVLGDQLPY*TTFATTWHTVNDNWKFEH  985