Nucleotide Sequence (270 letters)
Query ID: | ds2016-121_50 |
Query definition: | No definition line |
Query length: | 130 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
62.5 | 327.2 | 15% | 1.494e-08 | 80% | HQ442266.1 |
Alignments
Grapevine leafroll associated virus 1 isolate 12.2.1 coat protein like gene, partial sequence
Sequence ID: HQ442266.1 Length: 544 Number of Matches: 6
Range 1: 439 to 528 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 24/30(80%) | 0/30(0%) | Plus/Plus |
Query 89 CQGCFH*SRTKVGGSKTIRYRPSLNHKRCR 178 C GCFH*SRTKVGGSKTIRYRP L+H + R Subject 439 CAGCFH*SRTKVGGSKTIRYRPILHHNKQR 528
Range 2: 438 to 518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 24/27(89%) | 0/27(0%) | Minus/Minus |
Query 88 LWLRLGRYLIVFEPPTFVLD**KHPWQ 168 LW R+GRYLIVFEPPTFVLD**KHP Q Subject 438 LW*RIGRYLIVFEPPTFVLD**KHPAQ 518
Range 3: 431 to 517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 24/29(83%) | 0/29(0%) | Plus/Plus |
Query 81 KAFAKDVFINQERKLGARRRSDTVLVSTI 167 +AFA+DVFINQERKLGAR+RSDTVL TI Subject 431 EAFARDVFINQERKLGARKRSDTVLFFTI 517
Range 4: 433 to 516 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 23/28(82%) | 0/28(0%) | Minus/Minus |
Query 83 MVETRTVSDRLRAPNFRS*LMKTSLANA 166 MV+ RTVSDR RAPNFRS*LMKTS A A Subject 433 MVKNRTVSDRFRAPNFRS*LMKTSRAKA 516