Queries
Nucleotide Sequence (1368 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
632.5 | 3438.5 | 35% | 0 | 48% | NC_001948 | |
174.7 | 454.1 | 23% | 1.151e-73 | 30% | NC_009892 | |
124.8 | 474.8 | 29% | 1.141e-71 | 40% | NC_003462 | |
123.4 | 483.6 | 25% | 7.438e-71 | 39% | NC_014821 | |
125.2 | 450.0 | 25% | 3.294e-68 | 39% | NC_018714 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6545 to 7576 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
632.5 bits(1374) | 0.0 | 259/344(75%) | 0/344(0%) | Plus/Plus |
Query 13 *ALSVWHGASIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFELEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*NAFSATCQLG*DHNPINHWFGHWVGSALLKEIKSTIFRRQYSPVPTRRALQGRHEECNLLWP*AVIPKLRNIRSV*KFRTSNIGRDSGRFYTCIISLEFWS**ELQLPSKS 1044 *ALS+WH SIMNNLVKALSAFEFVGVF VLKFPVV+HSVPGSGKSSLIRELISEDE F+AFTAGVPDSPNLTGRYIKPY+PGCAV GK+NILDEYLSV D SGFDVLFSDPYQN+SIP+EAHFIK++ CRFG N CKY SFGF V SDG+DKV+VGSPF L+VEGVLICFGKEAVDLAVAHNS+FKLPCEVRGSTF+VVTLLKSRDPT ED+HWFY+AATRHR KLIIMQ*+AFSA C+LG +HN I+ W GHW +A +E+KST+FR Q+ +P+R ALQGR+++ NLLW A++P+L +IR +*+F N S R +TCI+ LEFWS *EL LPSKS Subject 6545 *ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKS 7576
Range 2: 7625 to 7729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 26/35(74%) | 0/35(0%) | Plus/Plus |
Query 1093 GPLESLF*LKIVAQARPLHQQ*GRYWEV*RL*ELA 1197 GPLES F*LK AQ RPLH * R WEV*RL* LA Subject 7625 GPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLA 7729
Range 3: 7790 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 18/25(72%) | 0/25(0%) | Plus/Plus |
Query 1258 SSPANQMRRLKPGLNHWSWLELKSN 1332 +SP NQMR LKPG N WS LELKS+ Subject 7790 NSPVNQMRLLKPG*NRWS*LELKSS 7864
Range 4: 6540 to 7742 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
557.8 bits(1211) | 0.0 | 262/401(65%) | 0/401(0%) | Plus/Plus |
Query 8 LFRP*VFGMVRVL*II*SKLCLRLNLLVCFVCLNFQLLFTVFQVAVKVA**GSLFLKTRLLWPLQQVCQTVQI*QEGTSSPTLQGVQCKGK*TYLMSTCLSLILLALMCCSQTLTRMSAFQERHTS*KPECVGLVPTSASTFNLLALMFVVMGWIKLL*GRHLNWRLRGSSFALERRP*I*QLHTILTSSCPARCGVQHLTL*RY*SPGIQLQKISIGSTLQPQGIEVN***CSKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRSCNCHPNPCSCRQQ*WQSPRLLY*GHWRVYFD*KLWPKRGPCINSEGGIGRFEGFRN*PYY*R 1210 L RP*VFG++ VL*II* K C L+L V VCLNFQ F V V VKV **GS F + R+ QQV QT I QEGT S LQGVQC+GK YLMSTC S I LMCCS+T T+ SAF +RH S + VGL A+ F L V W K L GR L+ L+G +AL RR I L T L S+ + VQ LT * +*+ IQ Q+I G TL Q N** CSKMPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGG YRDGTKS+TYCGP+QSFPSSGIFGQSENFVPL+LV+ L+AFIH LS+WNSG R+CNCHPNPCSCRQQ*WQ PRLL+*GHWRV FD*KL PK GPCI+ EGG GRFEGFR *P *R Subject 6540 LIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSGLGRNCNCHPNPCSCRQQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*R 7742
Range 5: 7794 to 7862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 18/23(78%) | 0/23(0%) | Plus/Plus |
Query 1262 PRRIK*GV*SPA*ITGVG*SSKA 1330 PR IK*G *SPA I GV *SSKA Subject 7794 PR*IK*GF*SPAKIAGVS*SSKA 7862
Range 6: 6718 to 7833 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
497.8 bits(1080) | 0.0 | 248/372(67%) | 0/372(0%) | Minus/Minus |
Query 186 FKPGFKRLI*FAGEXXXXXXXXXXXXTIINFFSSMANS*SLQTSQYLPHC*CKGLAWATIFNQNRLSSGPNKATLVTATTVVYMSKDLDGNCNSY*DQNSKEIMHV*KRPESRPILEVRNFQTDRIFLSLGMTA*GHNRLHSSCRPCNALRVGTGEYCLLNMVDLISLRSAEPTQCPNQWLMGLWS*PSWQVAEKAFYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDXXXXXXXXXXXXSKPKD*KYLQMLVPNLHILVFMKCASLGMLTFW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKATK 1301 F PGFK LI*F GE NLT H NLT IINFF+S AN *SLQTSQ+L H CKGL WA +FNQN LSSGPN+ATLV ATT VYMSKDLDGN NSY DQNSK+ +HV* R + L +N Q RI S G A H++L+ RPCNA R G C LN VDL S +A QCP+Q M LW P+ Q AEKA YC+II+ CLVAA *NQCLSS VGSLDF VTT VEP TSQGNL SELCATARSTAS PK + TPSTSS GDPT TLS PSL T KPK+ +YLQ+ PNL + MKCASLGML FW GSENSTSKPE S TDKYSSS+ FP TAHPG *GLMYLPVR GLSGTPAVKA K Subject 6718 F*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMK 7833
Range 7: 6541 to 6615 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 20/25(80%) | 0/25(0%) | Minus/Minus |
Query 9 NSNADKALTKLFIILAPCQTLKA*T 83 NSNAD ALTKLFIIL CQ LKA*+ Subject 6541 NSNADNALTKLFIILK*CQILKA*S 6615
Range 8: 6656 to 7732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
477.1 bits(1035) | 0.0 | 218/359(61%) | 0/359(0%) | Minus/Minus |
Query 124 YG*FLKPSNLPIPPSLLMQGPRLGHNFQSK*TLQWP**SNLGDCHYCCLHEXXXXXXXXXXXGPEFQRDNACIKATRVTTNIRGTKFSD*PNIPELGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILLHYYQFTSMPCGCNVEPMLIF*SWIPGLQ*RHNVKC*TPHLAGQLEVRIVCNC*IYGLLSKANEDPLNLQFKWRPYNNFIHPITTNIKAKRLKVLADVGTKPTHSGFYEVCLSWNADILVRV*EQHIKARSIRDRQVLIKYVYFPLHCTPWSVGLDVPSCQIWTVWHTCCKGHKSLVFRNKLPY*ATFTATWNTV 1200 +G* LKPSNLP PPS MQGP LG +FQSK TLQWP**SNLG CHYCCLHEQGFGWQLQ L PEFQ DN C+ A R T+I+GTKFSD PNIPELG DC GPQ*V LFVPSL* PP GN +LSPE GRFDFL+KC T+PMPKP VNGVMV AQ AGC*KGILLH YQF + C NV+P+ I WI Q ++VK *T + E R+V N I+ LL+KA P N+ K RP+N+F+ +T N+K + K+ A + KPT E+CL NAD+LV V EQHIK I D QVLIKY+ FP HCTPW + L+VPSC+I VW+TCC+ ++ L+ N LPY* TFT T +T+ Subject 6656 HG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTM 7732
Range 9: 7793 to 7861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 18/23(78%) | 0/23(0%) | Minus/Minus |
Query 1261 AFEL*PTPVI*AGLQTPHLIRRG 1329 AFEL* TP I AGLQ PHLI RG Subject 7793 AFEL*LTPAILAGLQKPHLIHRG 7861
Range 10: 6536 to 6601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 16/22(73%) | 0/22(0%) | Minus/Minus |
Query 4 QSFD*IIHNTRTMPNT*GLNNA 69 Q F+*IIHNT+ MPNT*GL N+ Subject 6536 QCFN*IIHNTQIMPNT*GLINS 6601
Range 11: 7519 to 7884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.6 bits(521) | 0.0 | 105/122(86%) | 0/122(0%) | Plus/Plus |
Query 987 MHYLFGILVLVGVAIAIQILAHVDNSSGSHQGCFIRATGESILIENCGPSEALASTVREVLGGLKALGISHTTEEIDYRC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQLKGQTHP 1352 M+ LFGILVLVG+ IAIQILAHVD+SSG+HQGCFIRATGESILIENCGPSEALASTV+EVLGGLKALG+S EEIDY C*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQ +G P Subject 7519 MYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEGSNAP 7884
Range 12: 7000 to 7476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 76/159(48%) | 0/159(0%) | Plus/Plus |
Query 468 G*SCCRVAI*TGG*GGPHLLWKGGRRSSSCTQF*LQVALRGAGFNI*RCDVIEVQGSNFRR*ALVLRCSHKASK*TDNNAVKCLFSNLPTGLRP*PH*PLVWALGWFCTS*GNQIYHIQETIFTSSHTEGITGTARRV*PIVALGSHSQAQEYSVSLKI 944 G S C VA T * G ++LW GG S C Q *+Q+ L FN *R + E++ SN R *ALVL C +K DN+AV+CLFS+L G +P* H* L WALG C *G+QIY IQ T +S T G+TGT ++V* V + S A YS +L+I Subject 7000 GQSHCGVAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGYSANLRI 7476
Range 13: 6676 to 6960 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 56/95(59%) | 0/95(0%) | Plus/Plus |
Query 144 *K*PNKGAYF*RRGFCGLYSRCARQSKSDRKVHQALRSRVCSARENKHT**VLVCL*YFWL*CAVLRPLPECQHSKRGTLHKNQNV*VWYQHLQV 428 *K* NKGA F F +SRC+RQ S RKVH AL SRVCSARE+ +T**VLV +F *CAVL P+P+ QHS RGT H+ +N+*VW ++LQ+ Subject 6676 *K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQI 6960
Range 14: 6544 to 6624 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 18/27(67%) | 0/27(0%) | Plus/Plus |
Query 12 LGLKCLAWCEYYE*FSQSFVCV*ICWC 92 LGLK LA EYYE*FS S V +*+C C Subject 6544 LGLKYLALFEYYE*FS*SIVSI*VCRC 6624
Range 15: 6642 to 7883 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
452.9 bits(982) | 0.0 | 237/414(57%) | 0/414(0%) | Minus/Minus |
Query 110 GCVWPFSCF*ALANSSDLSRASNASFDSPGSLPI*LAI*PI*QR*SISSVVWLIPKAFKPPNTSLTVDARASLGPQFSIKIDSPVALIKQPW*LPLLLST*ARIWMAIATPTRTRIPKR*CMYKSDQSHDQY*RYEIFRLTEYS*AWE*LPRATIGYTLRAVPVMPSVWELVNIVS*IW*I*FP*EVQNQPNAQTNG*WGYGLSPVGRLLKRHFTALLSVYFDALWLQRRTNAYLLKLDPWTSITSQRQMLNPAPRRAT*SQNCVQLLDLRPPFQSK*GPPQPPVQMATLQQLYPPHHYKHQSQKIESTCRCWYQTYTFWFL*SVPLLEC*HSGKGLRTAHQSQKYQRQTSTHQVCLFSLALHTLERRA*CTFLSDLDCLAHLL*RPQKPRLQK*APLLGYFYRYLEHCEQQLE 1351 G + P CF*ALANSSD SRAS ASFDSPGS PI*LAI PI*Q *SISS L PKAFKPP+TS TVDARASLGPQFSIKIDSPVAL+KQPW LPLLLST*ARIWMAI PT+TRIP R MY+ D ++D++* ++I RL EY A E L T+ YT VPV P+V EL+++V *I *I* P ++Q++PNAQ N W YG P+ RLLKRH TA LS+ L Q +T+AY L LD S +R LN + * Q+C Q D PP+QS P Q V AT Q L P H +++ + C+ QTY F *+VPL EC* G G RTAHQ+ K +TSTHQV SLALHTLE +A*CTFL D CL HLL*+ +K APLL YFY Y H E LE Subject 6642 GALEPSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIPNRQYMYECD*TYDKH*GHKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHLV*KATPQ*LCPNRHC*P*NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLE 7883
Range 1: 6485 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.7 bits(375) | 0.0 | 79/195(41%) | 0/195(0%) | Plus/Plus |
Query 40 SIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFELEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLL 624 ++M+ +V L + F ++ ++VH+VPGSGK++LIRE ++ + AF+ G PD PN+ GRYIK G G ILDEYLS +GFD FSDP+QN AHF+ RFG N QS G+ V S D+++ + F E+EG +IC K D ++ +++LPC+VRGSTF+VVT + Subject 6485 NVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Range 2: 7163 to 7381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.7 bits(244) | 0.0 | 39/73(53%) | 0/73(0%) | Plus/Plus |
Query 713 MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFG 931 MP QP +++K++ PL IGL +G+V+ L +S LP++GDNIH PHGG Y DGTK + YCGP++SFP+ G+ G Subject 7163 MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG 7381
Range 3: 7446 to 7577 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 13/44(30%) | 0/44(0%) | Plus/Plus |
Query 1005 ILVLVGVAIAIQILAHVDNSSGSHQGCFIRATGESILIENCGPS 1136 +++ V A+ I+ ++ + S C I TGES+ + NC S Subject 7446 VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLS 7577
Range 4: 7162 to 7380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 29/73(40%) | 0/73(0%) | Minus/Minus |
Query 712 PNIPELGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGI 930 P P +G GPQ*+ VPS * PP G *+LSP G +K T P +PM G + GC +GI Subject 7162 PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI 7380
Range 5: 6943 to 7062 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 20/40(50%) | 0/40(0%) | Minus/Minus |
Query 498 VTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSS 617 VTTS VEPRT QG+L S+ +S+ F QM PS+S+ Subject 6943 VTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSA 7062
Range 6: 6634 to 6801 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 23/56(41%) | 0/56(0%) | Minus/Minus |
Query 189 FW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAT 356 F *GSE S P + ++YSSSM P P M P FG SG+P KA+ Subject 6634 F**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKAS 6801
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6705 to 7166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 61/154(40%) | 0/154(0%) | Plus/Plus |
Query 40 SIMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFEL 501 SIM ++ L+ F F L P+VVH+VPGSGK++LI++ + + A T GVP+ N+ G YIK G +G +ILDEYLS ++GF+ LFSDPYQN AHFI RFG + + G+++ S D V + F+L Subject 6705 SIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL 7166
Range 2: 7378 to 7725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 46/116(40%) | 0/116(0%) | Plus/Plus |
Query 707 SKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRSCNCHPNPCSC 1054 + MPF QP +++K++ P+ +G+ + +VL L +S LP GDNIH PHGG+Y+DGTK ++YCGPR SFPSS + + I++ + A + SG R C P +C Subject 7378 TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPRDSFPSSSLISSGTPMIIGIIIFLIFAIYVSEKWSRSGSRRCSCCVPGAPAC 7725
Range 3: 7167 to 7301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 20/45(44%) | 0/45(0%) | Plus/Plus |
Query 499 LEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSR 633 +E EGV+IC K D H+ ++K PC+VRG+TFD+VT + + Subject 7167 IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK 7301
Range 4: 7332 to 7373 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/14(64%) | 0/14(0%) | Plus/Plus |
Query 664 YVAATRHRSKLIIM 705 +VA TRHRSKL+++ Subject 7332 FVALTRHRSKLVLV 7373
Range 5: 7163 to 7288 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 23/42(55%) | 0/42(0%) | Minus/Minus |
Query 495 NVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS 620 NVT S V PRT QGNL S LC +S+ F +Q+ TPS S S Subject 7163 NVTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS 7288
Range 6: 7377 to 7586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 29/70(41%) | 0/70(0%) | Minus/Minus |
Query 706 LGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILL 915 LG + LGPQ*+ LFVPS * PP G *ILSP G+ + T P G + G KG+L+ Subject 7377 LGKESLGPQ*LILFVPS**LPP*GKL*ILSPTCGKVLLVNVNSTTATAMPTAIGNTLFE*SGG*AKGMLV 7586
Range 7: 6854 to 7021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 24/56(43%) | 0/56(0%) | Minus/Minus |
Query 189 FW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAT 356 FW*GSE P DKYSS M P P L+Y+P SGTP V A+ Subject 6854 FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTAS 7021
Range 1: 6671 to 7129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.4 bits(263) | 0.0 | 60/153(39%) | 0/153(0%) | Plus/Plus |
Query 43 IMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFEL 501 IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + A T GVP+ N+ G YIK G +G +ILDEYLS ++GF+ LFSDPYQN AHFI RFG + ++ G+++ S D V + F L Subject 6671 IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL 7129
Range 2: 7347 to 7619 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 40/91(44%) | 0/91(0%) | Plus/Plus |
Query 713 MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFI 985 MPF QP +++K++ P+ IG + LVL L +S LP GDNIH PHGG+Y+DGTK ++YCGP+ SFPSS + + +++++T ++ Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSLISSGTPMIIIVILLTAAIYV 7619
Range 3: 7130 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 21/45(47%) | 0/45(0%) | Plus/Plus |
Query 499 LEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSR 633 +E EG +IC KE D H+ ++KLPC+VRG+TFD VT + + Subject 7130 VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 4: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 9/15(60%) | 0/15(0%) | Plus/Plus |
Query 661 FYVAATRHRSKLIIM 705 +YVA TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 5: 7126 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 27/67(40%) | 0/67(0%) | Minus/Minus |
Query 495 SLLRCLVAAT*NQCLSSEVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS 695 +L CLV+AT ++ + VT S V PRT QGNL S C +S+ SF +Q+ PS S+S Subject 7126 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS 7326
Range 6: 7340 to 7549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 31/70(44%) | 0/70(0%) | Minus/Minus |
Query 706 LGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILL 915 LG + LGPQ*+ L VPS * PP G *+LSP G+ +K RT P+ G +L G KGIL+ Subject 7340 LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILI 7549
Range 7: 6817 to 6984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Minus |
Query 189 FW*GSENSTSKPEVSETDKYSSSMFIFPCTAHPGA*GLMYLPVRFGLSGTPAVKAT 356 FW*GSEN KP D+YSS M P P L+ +P F SGTP V A+ Subject 6817 FW*GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTAS 6984
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6676 to 7134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 61/153(40%) | 0/153(0%) | Plus/Plus |
Query 43 IMNNLVKALSAFEFVGVFCVLKFPVVVHSVPGSGKSSLIRELISEDEAFVAFTAGVPDSPNLTGRYIKPYAPGCAVQGKINILDEYLSVSDTSGFDVLFSDPYQNVSIPREAHFIKTRMCRFGTNICKYFQSFGFDVCSDGVDKVVVGSPFEL 501 IM ++ L+ F F L P+VVH+VPGSGK++LI++ + + A T GVP+ N+ G YIK G +G +ILDEYLS ++GF+ LFSDPYQN AHFI RFG + Q G+++ S D V + F+L Subject 6676 IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL 7134
Range 2: 7349 to 7693 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 45/115(39%) | 0/115(0%) | Plus/Plus |
Query 710 KMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGHYRDGTKSVTYCGPRQSFPSSGIFGQSENFVPLILVVTLVAFIHALSLWNSGPSRSCNCHPNPCSC 1054 +MPF QP +++K++ P+ +G+ + +VL L +S LP GDNIH PHGG+Y+DGTK ++YCGP+ SFPSS + + I++ + A + SG R C P +C Subject 7349 RMPFSQPPDYSKSVFPVAVGVAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKDSFPSSSLISSGTPLIVGIIIFLIFAIYVSEKWSRSGNRRCICCIPGSPAC 7693
Range 3: 7135 to 7269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 18/45(40%) | 0/45(0%) | Plus/Plus |
Query 499 LEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSR 633 ++ EGV+IC + D H+ ++KLPC+VRG+T+D+VT + + Subject 7135 VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK 7269
Range 4: 7339 to 7554 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 31/72(43%) | 0/72(0%) | Minus/Minus |
Query 700 LGNDCLGPQ*VTLFVPSL*CPPCGNW*ILSPEYGRFDFLKKCRTNPMPKPMVNGVMVLAQLAGC*KGILLHY 915 LGN+ GPQ*+ VPS * PPCG *ILSP +G+ +K T P G +L G KGIL+ + Subject 7339 LGNESFGPQ*LIRLVPSW*LPPCGKL*ILSPTWGKVLLVKVKSTTATATPTATGKTLLE*SGG*EKGILISH 7554
Range 5: 7131 to 7331 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 28/67(42%) | 0/67(0%) | Minus/Minus |
Query 495 SLLRCLVAAT*NQCLSSEVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSS 695 +L+ CLV AT L+S NVT S V P T QG+L S LC +S+ +Q+ TPS S+S Subject 7131 NLVLCLVKATKRSGLTSSSRGFS*INVTMSYVAPLTWQGSLYSTLCHLRKSSTLSSRQIITPSGSTS 7331
Nucleotide Sequence (324 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
234.8 | 827.8 | 27% | 2.189e-61 | 51% | NC_001948 | |
203.6 | 429.0 | 34% | 5.334e-52 | 38% | NC_018714 | |
197.6 | 356.5 | 41% | 3.258e-50 | 37% | NC_008552 | |
201.3 | 550.4 | 45% | 2.568e-51 | 40% | NC_003462 | |
199.0 | 490.6 | 35% | 1.278e-50 | 38% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5864 to 6169 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.8 bits(506) | 0.0 | 98/102(96%) | 0/102(0%) | Minus/Plus |
Query 18 EWVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG 323 EWVR RGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSF+IMRFTGEASTFLFNTMANMLFTFLRYELTGSESIA G Subject 5864 EWVRTRGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAG 6169
Range 2: 5953 to 6168 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 57/72(79%) | 0/72(0%) | Plus/Minus |
Query 19 PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNSN 234 P AIDS+PVSSYL+ VNN+ AIVLN+ VLASPVNLII DPS DP+*I MNS*SKI+SSGNPKNFIICNSN Subject 5953 PANAIDSEPVSSYLRKVNNMLAIVLNRNVLASPVNLIIENDPSFDPK*IFMNS*SKIKSSGNPKNFIICNSN 6168
Range 3: 5863 to 5901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 11/13(85%) | 0/13(0%) | Plus/Minus |
Query 286 VQMPVNPLALTHS 324 VQ+PVNPL LTHS Subject 5863 VQIPVNPLVLTHS 5901
Range 4: 5864 to 6154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 57/97(59%) | 0/97(0%) | Plus/Minus |
Query 33 *LGPCQFVP*ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNPL 323 *L C FVP + +QH+ H V+QK G K HY + S+L S+MNF E I+QN IFR QKFHYLQ +C*D+V+LG IKGFVV* CAN+SE S +PL Subject 5864 *LRAC*FVPQKGEQHVSHSVKQKCAGLPSKPHYRE*SEL*SQMNFYEFIVQN*IFR*PQKFHYLQFEC*DEVVLGSIKGFVV*FCANSSESSSSDPL 6154
Range 5: 5865 to 6155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 56/97(58%) | 0/97(0%) | Plus/Minus |
Query 32 LTRTLSVRTLRM*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDEF**THNPKSDLQAIPKISLFATQMLR*SDPGRHQRLRSLTLCKCQ*TLWP*PT 322 LT++L VRT *TT P C*T+ W * SL*+ I+A I +EF * H+PK +LQ PKISL A +ML *S G+HQRLRSL LCK Q* L *PT Subject 5865 LTQSLLVRTSER*TTC*P*C*TEMCWPPQ*TSL*RMIRALIPNEFL*IHSPKLNLQVTPKISLSAIRMLG*SGLGKHQRLRSLILCKFQ*IL*F*PT 6155
Range 6: 5865 to 6029 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 37/55(67%) | 0/55(0%) | Minus/Plus |
Query 158 SGLGPEGSLAFAQSQTTKPLMPPRITLS*HLSCK**NFWDCLKI*FWIMSSSKFI 322 SG E SL FAQ+QTTKPLM P+ T S*H +C+**NFW LKI*FW M+S KFI Subject 5865 SGSELEDSLEFAQNQTTKPLMLPKTTSS*HSNCR**NFWGYLKI*FWTMNS*KFI 6029
Range 7: 6075 to 6155 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 15/27(56%) | 0/27(0%) | Minus/Plus |
Query 32 KPVPFCSTQWRICCLHS*GTN*QGPSQ 112 +P FC T W CC *GTN*Q SQ Subject 6075 RPAHFCLTLWLTCCSPF*GTN*QALSQ 6155
Range 8: 5932 to 6156 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 38/75(51%) | 0/75(0%) | Minus/Plus |
Query 31 PGSLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYILKVRTDRVRVN 255 P L+ SI +A+NEIFG+ *R +FGL*+H+NS I+A I YNE+Y Q++ V H G +VV++ +VRT+R+ VN Subject 5932 PRPLHPSIRIADNEIFGVT*RFNFGL*IHKNSFGIKARIILYNEVYWGGQHISV*HYG*HVVHLSEVRTNRL*VN 6156
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 5914 to 6219 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.6 bits(438) | 0.0 | 83/102(81%) | 0/102(0%) | Minus/Plus |
Query 18 EWVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG 323 EWV F GICTESDYEAFDASQDHFILAFEL++MKFLGLP DLI DY FIK HLGSKLG+FAIMRFTGEASTFLFNTMANMLFTFLRY+L+G E+I G Subject 5914 EWVTVHKFNGICTESDYEAFDASQDHFILAFELEVMKFLGLPPDLIADYTFIKTHLGSKLGNFAIMRFTGEASTFLFNTMANMLFTFLRYDLSGKEAICFAG 6219
Range 2: 6006 to 6218 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 42/71(59%) | 0/71(0%) | Plus/Minus |
Query 19 PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS 231 P + I S P+ SYL+ VNN+FA+VLNKKVLASPV +IAK PS +PR +LM *S +RS G P+NF+ NS Subject 6006 PAKQIASLPLKSYLRKVNNMFAMVLNKKVLASPVKRMIAKLPSFEPRWVLMKV*SAMRSGGRPRNFMTSNS 6218
Range 3: 5914 to 6162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 35/83(42%) | 0/83(0%) | Plus/Minus |
Query 75 HIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNPL 323 H+ H VEQ+ FT K+H K +KL ++M F+E +I N++ R++++FH LQLK +KV+L +K F++* CA E +PL Subject 5914 HVCHGVEQESACFTSKAHDCKIAKLRTQMGFNESVISNEVGRKTKEFHDLQLKSKNKVVL*RVKCFII*FCAYPIELMDGDPL 6162
Range 4: 5985 to 6173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 24/63(38%) | 0/63(0%) | Minus/Plus |
Query 64 GSLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYI 252 G LY *V +EI + R L H N S +AW FC + +Y *S++ VQH+G++V+++ Subject 5985 GPLYSCF*VGGHEIPWSSARPHC*LHFH*NPSGFEAWQFCNHALYW*SKHFLVQHHGKHVIHL 6173
Range 1: 4994 to 5299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 76/102(75%) | 0/102(0%) | Minus/Plus |
Query 18 EWVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG 323 +WV+A F+G+CTESDYEAFDASQDH+I+AFE+ +MK+LGLP DL+ DY FIK HLGSKLGSFAIMRF+GEASTFLFNTM+NMLFTF++YE+TG ESI G Subject 4994 DWVKANNFSGVCTESDYEAFDASQDHYIMAFEVAVMKYLGLPRDLVNDYIFIKTHLGSKLGSFAIMRFSGEASTFLFNTMSNMLFTFMKYEITGKESICFAG 5299
Range 2: 5086 to 5298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 41/71(58%) | 0/71(0%) | Plus/Minus |
Query 19 PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS 231 P + IDS PV SY NV +I +VLNKKVLASP NL+IAK PSL+PR +L+ *S RS G P+ FI S Subject 5086 PAKHIDSFPVISYFMNVKSILLMVLNKKVLASPENLMIAKLPSLEPRCVLIKM*SFTRSLGRPRYFITATS 5298
Range 3: 4994 to 5254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 32/87(37%) | 0/87(0%) | Plus/Minus |
Query 63 ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNPL 323 E ++HI H VEQ+ GFTRK H S+ S+ + M F++ ++ +Q+ +++ FHY L+ D +IL +KGF++ AN+ E +P+ Subject 4994 EREEHITHGVEQESAGFTRKPHDSEASEFRT*MRFNKDVVIHQVPWKTEVFHYCDLESHDVMIL*CVKGFIIRFSANSREVVSLDPI 5254
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5916 to 6218 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.3 bits(433) | 0.0 | 82/101(81%) | 0/101(0%) | Minus/Plus |
Query 18 WVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG 320 WV F G+CTESDYEAFDASQDHFILAFEL++MKFLGLP DLI DY FIK HLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRY+L G E+I G Subject 5916 WVTTSKFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPSDLIADYTFIKTHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYDLNGREAICFAG 6218
Range 2: 6005 to 6217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 43/71(61%) | 0/71(0%) | Plus/Minus |
Query 19 PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS 231 P + I S P+ SYL+ V +IFAIVLNKKVLASPV I+AK PSLDP+ +LM *S +RS G PKNF+ +S Subject 6005 PAKHIASLPLRSYLRKVKSIFAIVLNKKVLASPVKRIMAKLPSLDPKWVLMKV*SAMRSEGKPKNFMTSSS 6217
Range 3: 5916 to 6194 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 40/93(43%) | 0/93(0%) | Plus/Minus |
Query 42 PCQFVP*ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNP 320 P + +P + ++HI HC+EQ+G FT ++H K S GS+M FDE +I+N++ RQ+Q+FH +LK DK+IL GIK ++ L A+ E + +P Subject 5916 PIEIIPEKGEKHICHCIEQEGACFTCEAHNGKTS*FGSQMGFDEGVIRNEVGRQTQEFHDFKLKSQDKMILRGIKCLIIRLGAHTIEFTCSHP 6194
Range 4: 5987 to 6181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 26/65(40%) | 0/65(0%) | Minus/Plus |
Query 55 SLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYILKV 249 S Y * ++EI G A R GL +HQN IQ FC+ ++ *S++L VQ+NG+Y ++ +V Subject 5987 SFYPGF*A*SHEILGFAFRPHCGLHLHQNPFGIQTRKFCHYALHR*SKHLLVQYNGKYAFHLSQV 6181
Range 5: 5947 to 6159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 29/71(41%) | 0/71(0%) | Plus/Minus |
Query 77 YSPLC*TKRYWLHP*ISL*QKIQAWIQDEF**THNPKSDLQAIPKISLFATQMLR*SDPGRHQRLRSLTLC 289 Y PL *T+R LH * + Q WI + F** NP+ +A P+IS Q *+D RHQ + T C Subject 5947 YLPLY*TRRCLLHL*SA*WQNFLVWIPNGF**RCNPQ*GRKANPRIS*LQAQKPG*NDLARHQMPHNQTRC 6159
Range 1: 5920 to 6222 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.0 bits(428) | 0.0 | 80/101(79%) | 0/101(0%) | Minus/Plus |
Query 18 WVRARGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPEDLILDYEFIKIHLGSKLGSFAIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIASTG 320 WVR F G+CTESDYEAFDASQDHFILAFEL++MK+LGLP DLI DY FIK HLGSKLG+FAIMRFTGEASTFLFNTMAN+LFTFLRY+L G E+I G Subject 5920 WVRIHKFNGVCTESDYEAFDASQDHFILAFELEVMKYLGLPADLISDYTFIKTHLGSKLGNFAIMRFTGEASTFLFNTMANILFTFLRYDLNGKEAICFAG 6222
Range 2: 6009 to 6221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 44/71(62%) | 0/71(0%) | Plus/Minus |
Query 19 PVEAIDSDPVSSYLKNVNNIFAIVLNKKVLASPVNLIIAKDPSLDPR*ILMNS*SKIRSSGNPKNFIICNS 231 P + I S P+ SYLK VN+I A+VLN+KVLASPVN I+AK PS DPR*+LMN *S+I+S+G P+ F+ NS Subject 6009 PAKQIASFPLRSYLKKVNSILAMVLNRKVLASPVNRIMAKLPSFDPR*VLMNV*SEIKSAGKPRYFMTSNS 6221
Range 3: 5988 to 6185 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 27/66(41%) | 0/66(0%) | Minus/Plus |
Query 55 GSLYLSI*VANNEIFGIA*RSDFGL*VHQNSSWIQAWIFCYNEIYG*SQYLFVQHNGEYVVYILKV 252 G L+ +*+ ++EI A R DF L +HQNS W++ W FC+N I+ *SQ+ +Q++G Y +++ +V Subject 5988 GPLHSGL*IGSHEISWFASRFDFRLHIHQNSPWVKTW*FCHNAIHW*SQHFSIQYHG*YTIHLFEV 6185
Range 4: 5920 to 6213 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 37/98(38%) | 0/98(0%) | Plus/Minus |
Query 27 SN*LGPCQFVP*ECKQHIRHCVEQKGTGFTRKSHYSKRSKLGSKMNFDELIIQNQIFRQSQKFHYLQLKC*DKVILGGIKGFVV*LCANASEPSGPNP 320 +N L + +P + + +I H +E K GFT +SHY K +K K++FDE +I NQI Q++ FH Q K ++V+L IK VV C + E +P Subject 5920 TNCLLSVKVIPQKGE*YISHGIE*KSAGFTSESHYGKITKF*PKVSFDECVI*NQICWQTKIFHDFQFKGQNEVVL*CIKSLVVRFCTHTIEFVNSDP 6213
Range 5: 5954 to 6184 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 34/77(44%) | 0/77(0%) | Plus/Minus |
Query 56 TLRM*TTYSPLC*TKRYWLHP*ISL*QKIQAWIQDEF**THNPKSDLQAIPKISLFATQMLR*SDPGRHQRLRSLTL 286 T + * Y P * ++ WLH *I+L Q Q Q EF** N KS+L A IS Q *S P HQ+ RS L Subject 5954 TSKR*IVY*PWY*IEKCWLHQ*IALWQNYQVLTQGEF**MCNLKSNLLANQDIS*LPIQRPE*SGPVMHQKPRSQIL 6184
Nucleotide Sequence (2000 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1455.0 | 4681.0 | 36% | 0 | 44% | NC_001948 | |
265.0 | 1076.3 | 15% | 1.016e-129 | 28% | NC_014821 | |
258.1 | 969.5 | 19% | 5.599e-127 | 29% | NC_003462 | |
260.0 | 877.8 | 21% | 1.443e-126 | 32% | NC_018714 | |
203.1 | 1014.8 | 19% | 5.574e-122 | 32% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 2966 to 4936 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1455.0 bits(3169) | 0.0 | 598/657(91%) | 0/657(0%) | Minus/Plus |
Query 1 VSKLLDVPRSKKQSIIVLEGALAIDTSYGPKVLGSFEVFKGDFNIKKIEDGSIFVISYKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQTVLRQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKKEGWDVVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGISVE 1971 +SK+L++PRSKKQSI+VLEGAL+I+T YGPKVLGSFEVFKGDF+IKK+E+GSIFVI+YKAP+RS+G+LRVH +ECSFSGSKEVLLGCQIEA ADYDIDDFN F VPGDGNCFWHSVGFLLSTDGLALKAGI SFVESE LV P LSA + +QL +NAYAENEMIALFCIRHHVR I+ITPEYEVSWKFG+ EWPLCGILCL+SNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINP G++SALFDITNEHIRHVEKIGNGPQSIKVDELR+VKRSALD LSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWLSGIST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMDDSCKVAKAG+SKKEGWDVVTFEVFLRK+A LKAGHCVIFDEVQLFPPGYIDLCLL IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSK LDA+LVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFK GG+LISHDSFHTDDRRW+TALSRFSHNLDLVNITG+ VE Subject 2966 LSKVLEMPRSKKQSILVLEGALSIETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKGPLDAVLVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVE 4936
Range 2: 3466 to 4935 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
840.0 bits(1827) | 0.0 | 383/490(78%) | 0/490(0%) | Plus/Minus |
Query 2 STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETKIASKEVLDRAKRKSCMLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPASEMKASLRMVNRQRSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTTSQPSFFDLPAFATXXXXXXXXXXXXXXARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSRDLISEVDIPESHGLESLNFSSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSSSTFILCGPLPIFSTCLICSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHRGHSLSPNFQLTSYSGVIMISLT*CLMQN 1471 STL PVMFTKSKLWLKRD+AV H RSSV ESC+++ PP+LKFNPVDSP VSVSCF+PK*D TIFFSSKLETK ASK D A+RKSC+LWK+A*SA AAV+EPFLK*HGSLDSNIGFTNL LSMLYL LPSS+L++SLCSAP IARSF ESYVL* GSPASEMKASLR++++ RS+ PGGN+ TSSK+TQWPAF A FLR TSKVTTS PSFFDLPA ATLQLSSIS+S LIE A+A LGETKVTNLPSDLF+KLLY+KL PAP VPSTTVNS LIS VDIPES G SLNFSSLITPV+PPSKHPC+FSA SKLGK*VI DPFIER+SRADR T +SSTF+L GPLPIFSTCL+CSLVMSN A++ P GL+TSISP ISHLAQMS ASKASA+YIM +PPP* SSS +* V GLHR* TSTSRLPSAEA+AVIMQPF+GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LT C MQN Subject 3466 STLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVSCFIPK*DWTIFFSSKLETKTASKGPFDLARRKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQN 4935
Range 3: 2968 to 3423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.0 bits(476) | 0.0 | 109/152(72%) | 0/152(0%) | Plus/Minus |
Query 1514 CLKTVWADKDGSTRDSLSTKELMPAFKASPSVLNKKPTECQKQLPSPGTGNLLKXXXXXXXXXXI*QPSSTSLDPEKEHSVL*TLNLPEDLTGAL*DITNMEPSSIFLMLKSPLNTSKDPKTFGP*LVSIASAPSRTIIDCFLLLGTSSNFD 1969 CL+ A++ G T+ SLSTK+ +PAF+ASPSVL+KKPTECQKQLPSPGT +LKSS+S*SA ASI QPS+TSLDPE EHS L*TLNLP DL GAL IT +EPSSIFLM KSPL TSKDP+TFGP* VS+ APSRT IDCFLL G S D Subject 2968 CLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKIEPSSIFLM*KSPLKTSKDPRTFGP*SVSMDRAPSRTKIDCFLLRGISKTLD 3423
Range 4: 3047 to 4936 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
660.9 bits(1436) | 0.0 | 313/630(50%) | 0/630(0%) | Plus/Minus |
Query 1 FHADASNVYQVQVVAKAR*GRHPSTVISVE*VM*N*NSTIFEV*PC*FAKS*CELLHAKVRLHNLLLLKA*NQNRI*GGLRPSQKEVMHVVEDGIISECCSHGALLEMTWQSGLKHWIHKPPTLNVVPVGLTLK*SQYITLLSPQYCAILLGVICALTGITSK*NESITSYGQQTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFKGHNVPTFFF*FTSLCHFATIIHFQVSFN*IG*SPSG*NKGYEFAFRPLHKALVQKAFTSSKGAKHDCQLSRFDIRS*YS*EPWLGIVKLLITYHTS*AS*QTPLQLFSPFKTWKVSYL*SIH*KEVKSRSFHSSQLIHLYTLRAVANLLNMSYMFVGYVK*S*HAPARIDDLNLPIDITLSTNVKCFESLSEIHHV*ATTLTQLFKYVICGGPAQIVKNIHFTSTKRRGDSCDHAAIQWSTRLKMI*LQA*DSTQRPLAISKLPTHLIFWGDND*PHMMPNAE*GYHFVLCISIITELPQNGLG*QRWIYKRFTFNERTYACFQSKPICTQQETH*MPKTVTITRYREFVKVINVIISRGFDLTTEQHFLGSRKRALRLVNSQLARRSHRSLVRYHEYGTIFNLLNVKVPFEHLERSQNLWSI 1890 FH +V+Q+Q+VA+AR* P +I V+ +M* NS IFE+ P *F K CEL H+KV L L LLK NQN I G P Q++VMH++ED IISE SH AL E+TWQS +HW+HKPP V+P+ LK S+Y+TLLS Q C ILL VICALT ITSK*NESIT+Y +Q ++++ R+QL+LIKN +A LQ CNF K++ K + +P F * T +FA IIHF++ F+*I *S SG NKGYEF RP H+ LVQ+ S K KHD Q +I S Y+ +P I +LLITY+ S*A *QT LQLFSP K W+V Y IH*KE++ S Q IH Y LRA+ LNM Y+ + YVK + RI+ NL I IT S NVK +S S IHHV A +LT+L K +I G QI+ +I+FT +K + CDHA IQW L++I* +A +ST PL + PT+ IFW D+ P+++PNAE* H +L ISI+ +L +N G*+ W Y+ T +ER+ K I + +T+ MPK + ITR+RE VK+IN+IIS +L Q+ GS K A VN Q A S+ LVRY++ T +LLNVKVPFE+ +R Q+ W+I Subject 3047 FHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECELFHSKVGLDYLFLLKTGNQNGIQGTF*PRQEKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLFGSGK*AF*TVNPQPASGSNWGLVRYYKN*TFLHLLNVKVPFENFKRPQDFWTI 4936
Range 5: 2972 to 3022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 11/17(65%) | 0/17(0%) | Plus/Minus |
Query 1915 FKNYY*LLLTPRHI*QL 1965 FKN *LL PRH * L Subject 2972 FKNQN*LLFAPRHF*NL 3022
Range 6: 2980 to 4854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
501.4 bits(1088) | 0.0 | 293/625(47%) | 0/625(0%) | Minus/Plus |
Query 83 RCA*E*EAINNSS*RRACDRHQLWTKGFGIFRGVQRGL*H*ED*RWFHIRDILQGSCEIFWQVESSQDGVLFFWIQGSAARLSNRSLC*L*H**L*QIPCTW*W*LFLAFSGFLVEYRWACFESRHKFFR*K*ISCRSIFVSPNRFEAAQ**CLCRERNDSLILH*ASCEANHYHPRI*GELEVWR*RVASVWNLMLAVKSFSTLCSIEWLHDHSYRLCAW*T*SGCS*LSVQALHKSHI*RAVSRWWLKHDVSR*GFRSI*HLC*V*YQWGD*GHQSWRAHVSSI*HNQRTYKTC*EDWQRPAEYKGG*AEKSETICS*PPFNEWIKDNLLSKF*KG*KAAGVFARRLNWCDK**EV*RFQAMALRNINF*YQISRVDSRAWHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSQFN*KRLGNG**LQSGKGW*IKKRRLGRCDL*SVS*ENCKPEGRPLRHF**GSTVPSRLY*PLSVDHTK*CFHFTCW*SLSKHI*LPKGSRNTGG*AE*YIEIT*G*VLQVQHXXXXXXXXXXXVQTAMSFQEGLHDCSIR*LCHLPQHA*LPFGSV*DLLRCDFGFKL*GEEDCAVLLWHEATHTNFWRINRVKLQIWWSFNFT*LIPH 1957 R A E +AIN S*R R++LW+K G+F QRGL H*ED F+ + +QG I WQVE SQ +L F IQ ARL + +C*L*+** * C W*W L LAF F + W C + R+ FR +* +S SP+ F CLCRE +D +ILH A +A H RI* LE+ VA +WN + +KS T+ EWLHDHS+ W *S C LSV H S+ * A+S HDV * F +*HL *+*Y+W D* S + +*HN +K C*E+ P+E+K G* + + I PFNEW+ +NLL K * G*K A +FAR NW K**EV + +A I +*Y +D RAW++W W + VQE +E+V* IRNLCF+Q S+FN K NG**LQS *+K+ R+G + * *++C+ EG PL F**G V S ++ + +T *CFHFTCW*S+SKHI*L KGS N G *AE*+ *G + V H + EVCE NV ++TAMS Q+GL DC R*LC+LP +A*L G V L C FGF+ *GE+D VLLW+E HT+ W IN V+ Q W + + T* + H Subject 2980 RNASEQKAINFGS*RCPIHRNRLWSKSPGVF*SFQRGLSH*EDGGRFNFCNNVQGPN*IHWQVEGSQFRMLIFRIQRGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*LSPGEVKRSLGCRFGFQF*GEKDSPVLLWNETAHTHIW*INWVEFQKWGNSHIT*FLSH 4854
Range 7: 3903 to 4871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
310.4 bits(671) | 0.0 | 170/323(53%) | 0/323(0%) | Minus/Plus |
Query 66 WMS*EE*NDLLLTSFQ*MDQR*LTFQVLKGLKSCRGVC*EA*LV**VMRSLTIPSHGSQEYQLLISNLES*QSCLAPLELVKAFCTRAL*RGLKANS*PLFHPEGL*PIQLKETWKWMIVAKWQRLVNQKKKVGTL*PLKCFLGKLQT*RQAIASFLMRFNCSLQAILTFVC*PYEVMLSFHLLVIPVKAHMTPKRIAQYWGLSRVIY*DYLRVSPTGTTLRVGGL*IQCLSPDCHVISRRAP*LQHSLIMPSSTTCMTSFWLGLRPP*MRFWFQALRRRRLCSLTLA*SNSH*LLANQQG*TSNMVEF*FHMTHSTLMTVDG 1034 WM+ +D SFQ*M +* T Q L GLKSC+ VC* A*L *VMRS + + G Y LLI + +* SCL L L + CTR *+GL+ NS*PLF P+ L* IQ K KWMI AK + V Q++K G * L+ L KLQ *R A FLMR +C L + C Y VMLSFHLLVI VKAHMT KRI Q+W LSRV Y D LR G T + GGL* QC + DCHV S+RA *L SLIM SS CMT W G + P M FWF LRR+R S TL *++SH L NQ G* S M EF +HM T M G Subject 3903 WMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFSWRGQKVPWMPFWFPVLRRKR*SSPTLE*NSSHSHLVNQLG*ISKMGEFSYHMIPFTQMIGGG 4871
Range 8: 2964 to 3803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 123/280(44%) | 0/280(0%) | Minus/Plus |
Query 1134 LYQSC*MCLGVRSNQ**FLKARLRSTPVMDQRFWDLSRCSKGTLTLRRLKMVPYS*YXXXXXXXXLAS*EFTRRSALFLDPRKCCSVVKSKPLLIMTLMTLTNSLYLVMVTVFGIQWVSC*VQMGLL*KQA*VLSLKVNLL*IHLCQPKPF*GSSVIMLMQRTK**PYSALGIM*G*SLSPQNMR*VGSLEIASGLCVESYACSQIIFNLVLH*MAA*SQLSPLRLVDVKWMFLTICAGPPQITYLKSCVKVVA*T*CISLRLSKHLTFVLSVISMGRLR 1973 +Y * CLG +SNQ FLK +M Q+ W L + SKGT TLRR + V + * TR D LA * FT ++A F DP++ C + + +LIM LM LT SL LVM FGI V M L *+ LS +V+ *+ + QP+ F + MLM R +* YSA G *G S QNM+ VG+ SG VE +A +QI N H*M A*SQ L VK M IC P I +L+S V+ A T*CI L+L + LTF L+VI M RL+ Subject 2964 VYLRF*KCLGAKSNQFWFLKVPYP*KQIMVQKSWGLLKFSKGTFTLRRWRKVQFL**RTRPQLDPLAG*GFTVQNAHFPDPKRYC*AARLRHVLIMILMILTLSLCLVMAIAFGILLVFYLALMDLP*RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK 3803
Range 9: 3363 to 4394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.1 bits(485) | 0.0 | 153/344(44%) | 0/344(0%) | Plus/Minus |
Query 543 EGTVEPHQK*RNGLPSGLQFS*ETLQRSQRPNLLFLIYQPLPLCNYHPFPSLF*LNWLEPFWVKQRLRICLQTSS*SSCTESFYQLQRCQARLSTLEI*YQKLIFLRAMAWNR*TXXXXXXXXXXXANTPAAFQPFQNLESKLSLIHSLKGGQEQIVSLFSAHPPLYSAGRCQSSQHVLYVRWLCQIELTCARQD**PQSPH*YHT*HKCQMLRKPQRDTSCLSHHLDTALQICDLWRACTDS*EHPLHVYQAQRR*L*SCSHSMEHKVENDLTASIRFHTEATRYLQTSNSPHILG***LASHDA*CRIRLSFRSLHKHYH*AASKRFGLTKMDLQEIHFQRK 1574 E T PHQK +G PS LQ * Q+ P L L Y LC+YHPF F*LN L+ W KQRLRI QT S*+SCT + Q Q QAR S *YQ I+ +A + *TSHHL QL LAN A FQP Q+L S+L HSLKG + +I + HP L S G SQH L LCQ D* QS H YH * KCQ +K Q +TSC D A Q D TD+ H LH +Q ++ L*SC+HS+ V +DL FH AT + SN HIL * A A CRI S S HKH K GL +DL H RK Subject 3363 EETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRK 4394
Range 10: 4425 to 4694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
123.9 bits(264) | 0.0 | 56/90(62%) | 0/90(0%) | Plus/Minus |
Query 243 TEPKGSHACCGRWHNQRMLQSWSPS*NDMAVWTQTLDSQTSDSQCCTCRTYPQVISIYHSAQPPVLRDPFGSHMCFDRDHQQVK*KHHFV 512 T P SHA GR HNQR QS SP *+DMAV +TL SQTS C T PQ + + HSAQ P L DPF SHMCFD DHQQVK*KHH+V Subject 4425 TSPGESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV 4694
Range 11: 2979 to 3341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 54/121(45%) | 0/121(0%) | Plus/Minus |
Query 1596 QAHLYSTRNPLNAKNSYHHQVQGIC*SHQCHNQQRLRFDNRAALPWIQKKSTPSCELSTCQKISQEPCKISRIWNHLQSS*C*SPL*TPRKIPKPLVHNWCRSQARLQELLLIASYS*AHL 1958 Q H +N NAK++ HHQ Q C*+HQ HNQ + + A WI+K S +CE STCQ I PC + + N SS*C SPL* +K P L HN LQE LIA S A L Subject 2979 QVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPLWIRKMSILNCEPSTCQWI*LGPCTLLQKLNLPPSS*CESPL*KLQKTPGLLDHNLFLWIGHLQEPKLIAFCSEAFL 3341
Range 12: 4752 to 4919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 25/56(45%) | 0/56(0%) | Plus/Minus |
Query 18 *CLPSPSCG*SAIGPSSIYGHQCGMSHVKLKLHHI*SLTLLIRQKLV*VASCQSKT 185 *C P+P+CG*S I + H C +HV + H *+ T LI Q V* S QS+T Subject 4752 *CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AVSFQSRT 4919
Range 1: 3475 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.0 bits(572) | 0.0 | 117/276(42%) | 0/276(0%) | Minus/Plus |
Query 691 RQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 1518 +QL +N +AE E +A FC + ++L ++ E +W F E L Q NHF+PC P+NGC+I AIASAL RREVDVL L +P+ +F+E+ +G G ++ L+ FE F IC D GE+ ++N GGR+ A F + EH+ H+ + S V +L RV SA+ L+MNG++I Y PS +RA L L G TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3475 KQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 2: 4363 to 4803 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.5 bits(344) | 0.0 | 64/147(44%) | 0/147(0%) | Minus/Plus |
Query 190 VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI 630 V TFE+F+ + ++K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YDS DR I +SDI+R+L G++Y++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F + K ++ S E+K I Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEFSMMGRKDCPVVLVSSFEEKKII 4803
Range 3: 3193 to 3480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.8 bits(170) | 0.0 | 34/96(35%) | 0/96(0%) | Minus/Plus |
Query 1528 IFVISYKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQ 1815 + + K + G+LR H+ EC S E L GC + S ++ D ++ F V DGNCFWHSVG L+ DG +K + + + + P LS Q Subject 3193 VVIAFLKPKMTQGGELRTHEDECELSDLTEKLHGCSVILSRKFEPDLYHSFDVDADGNCFWHSVGPLIGVDGECIKKILHDQAKRDCVKCPRLSKQ 3480
Range 4: 3570 to 3911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 45/114(39%) | 0/114(0%) | Plus/Minus |
Query 1082 CSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K*FDCKHKIPHRGHSLSPNFQLTS 1423 CS N A + PP L SP +S L Q+ SK+ R + KP P +SSN GL R +TSTS AEA+A++ QPF G QG K* + K+ S N Q+ S Subject 3570 CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS 3911
Range 5: 4770 to 4988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 33/73(45%) | 0/73(0%) | Plus/Minus |
Query 2 STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETK 220 S + P+ F K L DRAV HLRS V S + P+ K PVDSP V P+ IFFSSKLET+ Subject 4770 SQVTPIPFIK*IS*LNLDRAVHHLRSLVKALS*VTRIAPF*KLRPVDSP*VMHFILRPRCAAIIFFSSKLETR 4988
Range 6: 4167 to 4280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 21/38(55%) | 0/38(0%) | Plus/Minus |
Query 713 ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVN 826 AR LLGETKV P D + L R+LLP PKVP N Subject 4167 ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITN 4280
Range 7: 4506 to 4727 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 32/74(43%) | 0/74(0%) | Plus/Minus |
Query 266 MLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPA 487 ML + S+++ V K HGSL + GF N L ML L* LP + L +SL I S S L*QGSPA Subject 4506 MLSQSVYSSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA 4727
Range 8: 4362 to 4466 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 16/35(46%) | 0/35(0%) | Plus/Minus |
Query 527 RSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTT 631 +SI PGG S* SS T WP+ + +SKV T Subject 4362 KSIYPGGKS*ISSMTTVWPSLILSKCRTKSSKVFT 4466
Range 9: 3957 to 4091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 19/45(42%) | 0/45(0%) | Plus/Minus |
Query 902 TPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSSST 1036 TPV P SK A S G * I PFI R A T S T Subject 3957 TPVAPSSKLSSKVEARSMDGL*SISAPFIARNLMALFDTRFRSDT 4091
Range 10: 4768 to 4983 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 39/72(54%) | 0/72(0%) | Minus/Plus |
Query 7 ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGIS 222 +LVSSFEEKKI+ ++ G+K +T+GESTGLNF+ G +L++++S T DRRW TALSRFSH++ +N G++ Subject 4768 VLVSSFEEKKIIAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVT 4983
Range 11: 4182 to 4307 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 15/42(36%) | 0/42(0%) | Minus/Plus |
Query 686 WHLWSW*KLSVQELYEEV*RQIRNLCFTQKGSSQFN*KRLGN 811 W+ W W*K S Q+++ ++ R+ +LCF++K S + + + LG+ Subject 4182 WNFWLW*KFSFQKIH*KITRKGNHLCFSKKISCRIHQQ*LGS 4307
Range 12: 3348 to 3386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.5 bits(45) | 0.0 | 10/13(77%) | 0/13(0%) | Minus/Plus |
Query 1622 CTW*W*LFLAFSG 1660 C *W*LFLAF G Subject 3348 C*C*W*LFLAFCG 3386
Range 13: 4372 to 4680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 29/103(28%) | 0/103(0%) | Plus/Minus |
Query 313 LLEMTWQSGLKHWIHKPPTLNVVPVGLTLK*SQYITLLSPQYCAILLGVICALTGITSK*NESITSYGQQTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFK 621 L+++ WQ ++ I + T NV +G + + L + + I +I LTGI I + ++NI RE+LNLI ++ MA K FK Subject 4372 LIQIAWQPPNENRISESLTQNVKFIGPATQYPHNVALATSKNMPIRTTIIVTLTGIPGNYYIDILLQPKNYQINIPRREELNLINDNCMALFDTIQVQDKEFK 4680
Range 14: 3348 to 3419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 15/24(62%) | 0/24(0%) | Plus/Minus |
Query 1589 FKASPSVLNKKPTECQKQLPSPGT 1660 F SPS + PTECQKQLPS T Subject 3348 FMHSPSTPIRGPTECQKQLPSAST 3419
Range 15: 4768 to 4983 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 20/72(28%) | 0/72(0%) | Plus/Minus |
Query 7 ADASNVYQVQVVAKAR*GRHPSTVISVE*VM*N*NSTIFEV*PC*FAKS*CELLHAKVRLHNLLLLKA*NQN 222 +D ++Y++ ++ K * P V ++ + NS + ++ * S K+R +N LKA*NQN Subject 4768 SDPHSIYKMNIMTKPG*SSPPPAVAG*STLISHENSPLLKIKTS*LTISDALHFKTKMRCNNFFFLKA*NQN 4983
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3471 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.1 bits(557) | 0.0 | 114/276(41%) | 0/276(0%) | Minus/Plus |
Query 691 RQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 1518 +QL N +AE E +A FC + +RL ++ E +W F E L Q NHF+PC P+NGC+I AI+SAL RREVDVL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GR+ A F + EH+ H+ + S V +L RV SA+ L++NG+++ Y PS +RA L G TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3471 KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 2: 4359 to 4793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 63/145(43%) | 0/145(0%) | Minus/Plus |
Query 196 VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEK 630 V TFE+F+ + ++K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G+SY++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F + K ++ S E+K Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEKK 4793
Range 3: 3189 to 3476 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 37/96(39%) | 0/96(0%) | Minus/Plus |
Query 1528 IFVISYKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQ 1815 I + K + G+LR H+ EC S E L GC + S ++ D F+ F V DGNCFWHSVG L+ DG LK + + + + P LS Q Subject 3189 IMLAFLKPKMTLGGELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKRILHDQAKKDGVKCPRLSKQ 3476
Range 4: 4347 to 4733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 37/129(29%) | 0/129(0%) | Plus/Minus |
Query 256 EVMHVVEDGIISECCSHGALLEMTWQSGLKHWIHKPPTLNVVPVGLTLK*SQYITLLSPQYCAILLGVICALTGITSK*NESITSYGQQTKVNIAWREQLNLIKNDAMACLQVCNFPKKHFKGHNVPTF 642 E+++ V ++ S L+E+ QS +KHWI +P T ++ V + S IT + + I VI LT +TS N I + ++ IAWR++LN I ++++ L + FK + F Subject 4347 ELLYTVPKSVLLLI*SQSGLIEVARQSAVKHWIPEPLTQDIELVTSPAENSHDITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFDTHIF 4733
Range 5: 4748 to 4984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 35/79(44%) | 0/79(0%) | Plus/Minus |
Query 2 STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETKIASKEV 238 S + P+ K L +RAV RS V S K P+ KFNPVDSP V F P+* TIFFSSKLET + + Subject 4748 SQVTPMPLMK*MS*LNLERAVHQRRSLVRALSYVTKIAPFWKFNPVDSPYVIHFIFRPR*AATIFFSSKLETSTTGQSL 4984
Range 6: 3632 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 38/92(41%) | 0/92(0%) | Plus/Minus |
Query 1082 CSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K* 1357 CS N A + P L SP +S L Q+ S R M KP P +SS GL +TSTS SAE IA+I PF G QG K* Subject 3632 CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK* 3907
Range 7: 3251 to 3415 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 23/55(42%) | 0/55(0%) | Plus/Minus |
Query 1589 FKASPSVLNKKPTECQKQLPSPGTGNLLKXXXXXXXXXXI*QPSSTSLDPEKEHS 1753 FK SPS PTECQKQ PS T K S S P S S+ + HS Subject 3251 FKYSPSTPINGPTECQKQFPSASTSKEWKRSGSNFLLRITEHP*SFSVKSDNSHS 3415
Range 8: 4163 to 4276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 16/38(42%) | 0/38(0%) | Plus/Minus |
Query 713 ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVN 826 A LLGETKV P D + L ++L P P VP ++ Subject 4163 ASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIIS 4276
Range 9: 4764 to 4979 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 40/72(56%) | 0/72(0%) | Minus/Plus |
Query 7 ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGIS 222 +LVSSFEEKKIV ++ G+K +T+GESTGLNF+ G +L++++S T DRRW TALSRFSH++ +N G++ Subject 4764 VLVSSFEEKKIVAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVT 4979
Range 10: 4504 to 4689 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.5 bits(58) | 0.0 | 22/62(35%) | 0/62(0%) | Minus/Plus |
Query 300 LVIPVKAHMTPKRIAQYWGLSRVIY*DYLRVSPTGTTLRVGGL*IQCLSPDCHVISRRAP*L 485 LV VK MT +I + +VI *++ T + V G IQC + DC S R *L Subject 4504 LVTLVKVIMTAAQIGTSLLVVKVIS*EFSAGEVTSSIS*VRGSGIQCFTADCLATSIRPD*L 4689
Range 11: 4502 to 4729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 31/76(41%) | 0/76(0%) | Plus/Minus |
Query 260 SCMLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPA 487 SC+L + S+++ V L+ G+L N GF NL L +L L* P L ISL + S +S L*QGSPA Subject 4502 SCILSQRVYSSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA 4729
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3472 to 4299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.0 bits(561) | 0.0 | 115/276(42%) | 0/276(0%) | Minus/Plus |
Query 691 RQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 1518 +QL N +AE E +A FC + +RL ++ E +W F E L Q NHF+PC P+NGC+I AIASAL RREVDVL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GR+ A F + EH+ H+ + S V +L RV SA+ L++NG++I Y PS +RA L G TGV+ K + + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3472 KQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4299
Range 2: 4360 to 4800 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 64/147(44%) | 0/147(0%) | Minus/Plus |
Query 190 VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI 630 V TFE+F+ + ++K GH V+ DE+QLFPPGYIDL +L + I +AGDPCQS YDS DR I +SDI+R L G+SY++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F + K ++ S E+K + Subject 4360 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTLWDSIQEFSMMGRKDCPVVLVSSFEEKKVV 4800
Range 3: 3208 to 3477 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 36/90(40%) | 0/90(0%) | Minus/Plus |
Query 1528 KAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALKAGISSFVESESLVDPSLSAQ 1797 K + G+LR H+ EC S E L GC + S ++ D F+ F V DGNCFWHSVG L+ DG LK + + + P LS Q Subject 3208 KPKMTLGGELRSHEDECELSDLTEKLHGCSVILSRKFEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLKKILHDQALKDGVKCPRLSKQ 3477
Range 4: 3636 to 3917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 37/94(39%) | 0/94(0%) | Plus/Minus |
Query 1073 CLICSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K 1354 C CS N A + P L SP +S L Q+ N S + R + KP P +SS GL +TSTS SAEAIA++ P G QG K Subject 3636 CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLK 3917
Range 5: 4770 to 4985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 31/72(43%) | 0/72(0%) | Plus/Minus |
Query 2 STLMPVMFTKSKLWLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLET 217 S + P+ F K L DRAV RS V S + P+ K PVDSP V P+ T FFSSKLET Subject 4770 SHVTPMPFMK*IS*LNLDRAVHQRRSLVRALS*VTRIAPF*KLRPVDSPYVIHFILRPRCAATTFFSSKLET 4985
Range 6: 4158 to 4277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 18/40(45%) | 0/40(0%) | Plus/Minus |
Query 713 ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVPSTTVNSR 832 A LLG+TKV P D + L R+L P P VP +N R Subject 4158 ASDLLGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIINFR 4277
Range 7: 4503 to 4724 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 31/74(42%) | 0/74(0%) | Plus/Minus |
Query 266 MLWKMA*SANAAVMEPFLK*HGSLDSNIGFTNLRLSMLYL*DLPSSNLNISLCSAPSIARSFWESYVL*QGSPA 487 ML + S+++ V K GSL IGF NL L ML L* P L +SL I RS S L GSPA Subject 4503 MLSQRVYSSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA 4724
Range 8: 4359 to 4463 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 17/35(49%) | 0/35(0%) | Plus/Minus |
Query 527 RSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTT 631 RS+*PGGNS* SS T P+ + N S V T Subject 4359 RSM*PGGNS*ISSMTTV*PSLMLSRCKMNNSNVLT 4463
Range 9: 3954 to 4088 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 19/45(42%) | 0/45(0%) | Plus/Minus |
Query 902 TPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSSST 1036 TPV P SK A S G * I P I + A TLL S T Subject 3954 TPVAPNSKLSSKVDARSIEGL*SISAPLIAKNLIALFETLLRSET 4088
Range 10: 4765 to 4980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 39/72(54%) | 0/72(0%) | Minus/Plus |
Query 7 ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVNITGIS 222 +LVSSFEEKK+V ++ G+K +T+GESTGLNF+ G +L++++S T DRRW TALSRFSH++ +N G++ Subject 4765 VLVSSFEEKKVVAAHLGLKMKCITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVT 4980
Range 1: 3305 to 4030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 87/242(36%) | 0/242(0%) | Minus/Plus |
Query 814 LSAQTVLRQLSDNAYAENEMIALFCIRHHVRLIIITPEYEVSWKFGDSEWPLCGILCLQSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPGGRMSALFDITNEHIRHVEKIGNGPQSIKVDELRRVKRSALDLLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLSGISTSDIKSRELTVV 1539 ++ + +LRQ+S + +AE E +A FC + ++L +++ V+W F ++ L Q NHF PC P+NGC++ AIASALGRRE+DVL L +P ++E+ C G G + L FE F I A+ D G + +N G++SA F + EH+ H++++ S + +L V +SAL LL +NGS+I+Y PS +RA+ L L G TGV+ E +N + + G+ + + + T++ Subject 3305 ITHKELLRQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII 4030
Range 2: 4208 to 4648 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 72/147(49%) | 0/147(0%) | Minus/Plus |
Query 190 VVTFEVFLRKIANLKAGHCVIFDEVQLFPPGYIDLCLLTIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFLLARSKTSLDAILVSSFEEKKI 630 V+TFE+FL IA++K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQS YDS+ DR + SDI+ +L GKSYRYNI S+RF NP+F SRLPC +T +Y ++ ++ F LA K ++ S E+K + Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTLWDSITQFELAGGKNFPVVLVSSFEEKKVV 4648
Range 3: 3059 to 3271 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 34/71(48%) | 0/71(0%) | Minus/Plus |
Query 1588 YKAPVRSSGKLRVHKTECSFSGSKEVLLGCQIEASADYDIDDFNKFPVPGDGNCFWHSVGFLLSTDGLALK 1800 YK + +LR H EC S E L GC + S ++ D+F+ F VPGDGNCFWHSVG L+ DG+ LK Subject 3059 YKPRLGKGMQLRTHNEECELSDFTEQLFGCTVRLSRKFNPDEFHVFDVPGDGNCFWHSVGPLIGVDGILLK 3271
Range 4: 4030 to 4110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 11/27(41%) | 0/27(0%) | Minus/Plus |
Query 731 WHLWSW*KLSVQELYEEV*RQIRNLCF 811 W+LW W*+ S+ E++ ++ R+ N CF Subject 4030 WYLWMW*EHSI*EVHIKITRKSYNFCF 4110
Range 5: 4624 to 4698 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 12/25(48%) | 0/25(0%) | Minus/Plus |
Query 137 KL*GEEDCAVLLWHEATHTNFWRIN 211 KL*GEE C E NFW +N Subject 4624 KL*GEEGCCCTPRIENEVPNFWGVN 4698
Range 6: 4603 to 4794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 34/64(53%) | 0/64(0%) | Plus/Minus |
Query 41 WLKRDRAVIHLRSSVWNESCEIKTPPYLKFNPVDSPKVSVSCFMPK*DCTIFFSSKLETKIASK 232 WL R+RAV HL S V S + K P+ KF PVDSPKV F P+ T FFSSKLET+ K Subject 4603 WLNRERAVNHLLSLVRELS*DTKIAPF*KFRPVDSPKVRHFIFNPRCAATTFFSSKLETRTTGK 4794
Range 7: 3487 to 3762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 37/92(40%) | 0/92(0%) | Plus/Minus |
Query 1082 CSLVMSNRADMRPPGLMTSISPLISHLAQMSNASKASARYIMFKPPP*HSSSNM*FVEGLHR*LRTSTSRLPSAEAIAVIMQPFNGAQG*K* 1357 CS N AD+ P L P S LA + N S + +R KP P +SS GL + RTS S LP A+AIA+ QP G G K* Subject 3487 CSFSKENSADIFPSSLRQIKLP**SSLALIENISNSLSRS*TQKPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK* 3762
Range 8: 4207 to 4365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 27/53(51%) | 0/53(0%) | Plus/Minus |
Query 473 QGSPASEMKASLRMVNRQRSI*PGGNS*TSSKMTQWPAFRFAIFLRNTSKVTT 631 QGSPA S + R RS *PGG S* SS +T P AI +RN+SKV+T Subject 4207 QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST 4365
Range 9: 4030 to 4128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 20/33(61%) | 0/33(0%) | Plus/Minus |
Query 713 ARALLGETKVTNLPSDLFIKLLYRKLLPAPKVP 811 AR LLGETKV P D + L R LLP PKVP Subject 4030 ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP 4128
Range 10: 3199 to 3288 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 16/30(53%) | 0/30(0%) | Plus/Minus |
Query 1571 KELMPAFKASPSVLNKKPTECQKQLPSPGT 1660 + L F PS PTECQKQ PSPGT Subject 3199 RSLRMPFNKIPSTPISGPTECQKQFPSPGT 3288
Range 11: 3814 to 3954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 20/47(43%) | 0/47(0%) | Plus/Minus |
Query 890 SSLITPVKPPSKHPCSFSALSKLGK*VIFDPFIERRSRADRFTLLSS 1030 S+ ITPV P + S ALS G+* I DP I R A T+ S Subject 3814 SAHITPVVPAWRLLASV*ALSMEGE*EISDPLIIRSFSALLLTVWRS 3954
Range 12: 4613 to 4813 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 39/67(58%) | 0/67(0%) | Minus/Plus |
Query 22 ILVSSFEEKKIVQSYFGMKQLTLTFGESTGLNFKYGGVLISHDSFHTDDRRWMTALSRFSHNLDLVN 222 +LVSSFEEKK+V ++ G+K LTFGESTGLNF+ G + +S++S T +RRW+TALSRFSH + +N Subject 4613 VLVSSFEEKKVVAAHLGLKMKCLTFGESTGLNFQKGAIFVSYESSLTSERRWLTALSRFSHEIHFIN 4813
Range 13: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.2 bits(160) | 0.0 | 32/68(47%) | 0/68(0%) | Minus/Plus |
Query 643 SDIKSRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDSCKVAKAGKSKK 846 ++I R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + + K GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 14: 4215 to 4403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 20/63(32%) | 0/63(0%) | Minus/Plus |
Query 435 PLKCFLGKLQT*RQAIASFLMRFNCSLQAILTFVC*PYEVMLSFHLLVIPVKAHMTPKRIAQY 623 PL CFL + R+ LMRF+ SL IL + + LL IP K + I + Subject 4215 PLSCFLWE*LPLRRGTR*SLMRFSSSLLVILISFWSALALTSTLFLLEIPAKVTTIARMIVTF 4403
Nucleotide Sequence (803 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
590.3 | 2416.6 | 33% | 7.266e-168 | 66% | NC_001948 | |
176.1 | 336.2 | 24% | 2.588e-54 | 36% | NC_009892 | |
128.0 | 335.4 | 26% | 6.388e-48 | 41% | NC_003462 | |
127.1 | 303.6 | 24% | 3.05e-47 | 41% | NC_018714 | |
126.6 | 298.6 | 35% | 1.99e-46 | 38% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6434 to 7207 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
590.3 bits(1282) | 0.0 | 246/258(95%) | 0/258(0%) | Minus/Plus |
Query 29 EMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVVD*ALSIWRCSSIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAA 802 EMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE +D*ALSIW SIMNNLVKALSAFEF+GVFSVLKFPVVIHSVPGSGKSSLIRELISEDE+F+AFTAGVPDSPNLTGRYIK YSPGCAV GKVNILDEYLSVQD SGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLD VIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAA Subject 6434 EMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAA 7207
Range 2: 6694 to 6969 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.5 bits(405) | 0.0 | 81/92(88%) | 0/92(0%) | Plus/Minus |
Query 267 EERYLQVFTPNLQVLDLMKCASLGILIFWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKLSSSEINS 542 EERYLQVFTPNLQV DLMKCASLG+L+FWYGSENSTSKPE S TDKYSSSI TFP TAHPGE* LMYLPVRLGLSGTPAVKA K SSSEI+S Subject 6694 EERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISS 6969
Range 3: 7018 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 61/63(97%) | 0/63(0%) | Plus/Minus |
Query 30 AAM*NQCLSSGVGSLDFKRVTTLKVEPLTSHGNLNSELCATARSTASLPKHISTPSTSRVKGD 218 AAM*NQCLSSGVGSLDFKRVTTLKVEPLTS GNLNSELCATARSTASLPKHISTPSTS VKGD Subject 7018 AAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGD 7206
Range 4: 6433 to 6642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 61/70(87%) | 0/70(0%) | Plus/Minus |
Query 594 NLSTLKTPINSKADNALTKLFIILEQRQILKA*STTSNRPEIEHLILCLFLTRNLTQL*CASTSSSVIIS 803 NLSTLKTP NS ADNALTKLFIIL+ QILKA*S SNRPEIEHLILCLFLT+NLTQL* ASTSSSVIIS Subject 6433 NLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIIS 6642
Range 5: 6434 to 7204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
379.1 bits(821) | 0.0 | 171/257(67%) | 0/257(0%) | Plus/Minus |
Query 32 SDVKPVPVLWGWVS*FQKGYHIEG*TSNLTRQLEFRVVRNSEIYRLLAKTYQHPLNI*SEGRSHNDVVQPVAANFETERGKVFASVHTKPTSLGLNEMRLFGNTDILVRV*KQYIKT*NVLNRQVLIKYIHFPLHCASW*VMLDVPPCEVRTVWNTSCESHETLVL*D*LPYXXXXXXXXXXMYNNWKFEHTENTYKLEG*QCFN*IIHNTRTTPNT*GLINHFKQA*N*APHFMLVPNQEPHTIVVCLHLLFCHHF 802 S+VKPVP+LWGW+S*FQK Y ++ *TSN TR EFRVVRNSEI+ LL K Y HP NI* + R HND VQ V AN +TE GK+FAS+H KPTS L+EM LF N D+LV V +Q+IKT* +L+ QVLIKYI+FP HC W + L+VP CE+R VWNT CES+E L+L +*LPY*TT TTTRHTM + WKF+HTENTYKL+ *QCFN*IIHNT+ PNT*GLIN FK A*N*A H MLVP+QE +TI++ LH HHF Subject 6434 SNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHF 7204
Range 6: 6433 to 7206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
375.4 bits(813) | 0.0 | 175/258(68%) | 0/258(0%) | Minus/Plus |
Query 30 *NDDRRGGGGTLQLCEVPG*EQA*NEVLNFRPV*SG*LGLKYLALFEYYE*FS*SIVSLRVYRCFQCAQISSCYT*CAW*W*E*FNKGVNLRGREFRGFHSWCSRQS*PHREVHQALLTRMRSARESEYT**VLVCSRHFRF*CTVFRPVPEYQYSQRGAFH*VQDL*VWCEHLQIPFLFRFQS*QRRAGRRHCGIALHSRC*GGADMFWQGGGRSRCCAQL*IQVAV*G*RFNLQCGNPFEIKRPNPRGQALVLHRC 803 *NDDR GG L LC + G EQA*+E+LNFRP+*S *LGLKYLALFEYYE*FS*SIVS+ V RCFQCA ISS ++*CAW*W*+*FNKG N RG EF FHS CSRQ * HR+VH AL +R+ SARES YT**VLV R FRF*C V P+P++Q+S RG FH V++L*VW E+LQI FL RF *Q R G+ HCG+A ++RC* GA+M W GG SRCCAQL*IQ+ +* *RFN N FEIKR NPRG ALVLH C Subject 6433 *NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF*G*Q*RFGQSHCGVAFYTRC*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCC 7206
Range 7: 6435 to 6971 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
230.2 bits(496) | 0.0 | 125/179(70%) | 0/179(0%) | Plus/Minus |
Query 265 KRKGICKCSHQTYKSWT**NAPLWEY*YSGTGLKTVHQNLKCLEQTSTHQVYSLSLALRILVSNA*CTSL*G*DCLEHQL*KPRNSRPLRLTPLLNYSYHYQAHYV*QLEI*AH*KHXXXXXXXXXXXNYS*YSNNAKYLRPNQPLQTGLKLSTSFYACS*PGTSHNCSVPPPPLLSSF 801 +RK ICK S QTYK T**N PL E * G G +T HQNLK L +TSTHQVY LSLAL L + A*CT L* * CLEH L*K NS P +L PLLNY YHYQAHY * LEI*AH*KHL T+ LTML*LNYS*YSNNAKYLRPNQ LQ GLKLS S YACS*P HN + PP SSF Subject 6435 RRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSF 6971
Range 8: 7032 to 7217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.6 bits(187) | 0.0 | 42/62(68%) | 0/62(0%) | Plus/Minus |
Query 19 CLVGQRCKTSACPLGLGLLISKGLPH*RLNL*PHTAT*IQSCAQQRDLPPPCQNISAPPQHL 204 C++ Q+CKTSA PLGL LLISK L *+LNL* H *IQSCAQQRD PP Q+I AP QHL Subject 7032 CVL*QQCKTSAYPLGLDLLISKELRR*KLNL*LHKVI*IQSCAQQRDPLPPYQSILAPLQHL 7217
Range 9: 6435 to 7217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
295.2 bits(638) | 0.0 | 172/261(66%) | 0/261(0%) | Minus/Plus |
Query 19 K**QKRRWRHTTIV*GSWLGTSIK*GAQFQACLKWLIRP*VFGVVRVL*II*LKHCQPSSL*VFSVCSNFQLLYIVCLXXXXXXX*GS*SQRTRVSWLSQLVFQTVLTSQGGTSSITHQDAQCKGK*IYLMSTCLFKTFQVLMYCFQTRTRISVFPKRRISLSPRLVGLV*TLANTFPLSVSKLAATGWTTSLWDRPSL*MLRGC*YVXXXXXXXXXXXXXLNSSCRVRLEVQPSMW*PF*NQETQPQRTGTGFTSLPNQT 801 K** +++WR IV SW GTSI+* AQFQA LK LIRP*VFG++ VL*II*LKHCQ SL*VFSVC NFQ +IVCLVVV+VV**GS* R R+S LSQ VFQT L SQ GT S+ Q QC+GK IYLMSTC K FQVLM C +T T+ S F KR IS S +LVGL * LAN FP SV +LA T WT SLW R *ML+GC*Y L RR+ ISLLRTTLNS+ V+LEVQ * F*NQE QPQR GTGFT L T Subject 6435 K**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDT 7217
Range 1: 6485 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 80/195(41%) | 0/195(0%) | Minus/Plus |
Query 80 SIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLL 664 ++M+ +V L + F ++ +++H+VPGSGK++LIRE ++ + AF+ G PD PN+ GRYIK G G ILDEYLS + +GFD FSDP+QN AHF+ + RFG NT L S G+ V+S D++I + F ++EG +IC K D ++ E++LPC+VRGSTF VVT + Subject 6485 NVMDTVVSLLFEYGFERTSVPIEDKLIVHAVPGSGKTTLIREALNRNLGIEAFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Range 2: 6338 to 6439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 18/34(53%) | 0/34(0%) | Minus/Plus |
Query 695 MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEVV 796 ++EEE++AHYNCVRF+V++ H ++CS+S LF + Subject 6338 LSEEEMDAHYNCVRFIVKHSHLLKCSVSDLFRSI 6439
Range 3: 6340 to 6426 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 18/29(62%) | 0/29(0%) | Plus/Minus |
Query 708 RPEIEHLILCLFLTRNLTQL*CASTSSSV 794 R E EH LT NLTQL*CAS SSS+ Subject 6340 RSETEHFRRWECLTMNLTQL*CASISSSL 6426
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 6705 to 7142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.0 bits(273) | 0.0 | 60/146(41%) | 0/146(0%) | Minus/Plus |
Query 227 SIMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDV 664 SIM ++ L+ F F L P+V+H+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + +GF+ LFSDPYQN AHFI + RFG T + L G+ ++S D V Subject 6705 SIMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNNNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIV 7142
Range 2: 7167 to 7301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 19/45(42%) | 0/45(0%) | Minus/Plus |
Query 71 LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR 205 ++ EGV+IC K D H+ E+K PC+VRG+TF++VT + + Subject 7167 IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK 7301
Range 3: 6489 to 6584 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 16/32(50%) | 0/32(0%) | Minus/Plus |
Query 701 MTEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 796 +T +EV+AHYNCVRF+V++ H ++ +I LF+ Subject 6489 LTPQEVDAHYNCVRFIVQHNHLLKSNIRDLFK 6584
Range 4: 6848 to 7021 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 24/58(41%) | 0/58(0%) | Plus/Minus |
Query 348 FWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKL 521 FW GSE P DKYSS + P P L+Y+P L SGTP V A+ L Subject 6848 FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTASIL 7021
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 6676 to 7110 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 59/145(41%) | 0/145(0%) | Minus/Plus |
Query 227 IMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDV 661 IM ++ L+ F F L P+V+H+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + +GF+ LFSDPYQN AHFI + RFG T + L G+ ++S D V Subject 6676 IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALLRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIV 7110
Range 2: 7135 to 7269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 19/45(42%) | 0/45(0%) | Minus/Plus |
Query 71 LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR 205 +D EGV+IC + D H+ E+KLPC+VRG+T+++VT + + Subject 7135 VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK 7269
Range 3: 6490 to 6582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 15/31(48%) | 0/31(0%) | Minus/Plus |
Query 704 MTEEEVEAHYNCVRFLVRNKHKMRCSISGLF 796 ++ +EV+AHYNCVRF+V++ H ++ +I LF Subject 6490 LSPQEVDAHYNCVRFIVQHNHLLKSNIRDLF 6582
Range 4: 6816 to 6989 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 25/58(43%) | 0/58(0%) | Plus/Minus |
Query 348 FWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKL 521 F YGSE KP D+YSS I FP P LM +P SGTP V A+ L Subject 6816 F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML 6989
Range 1: 6671 to 7105 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.6 bits(270) | 0.0 | 59/145(41%) | 0/145(0%) | Minus/Plus |
Query 227 IMNNLVKALSAFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKHYSPGCAVQGKVNILDEYLSVQDISGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDDV 661 IM ++ L+ F F L P+V+H+VPGSGK++LI++ + + + A T GVP+ N+ G YIK G +G +ILDEYLS + +GF+ LFSDPYQN AHFI + RFG T + L + G+ ++S D V Subject 6671 IMETVLSLLNEFGFERTVEPLSDPIVVHAVPGSGKTTLIKQALIRNHNIEAVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIV 7105
Range 2: 7130 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 20/45(44%) | 0/45(0%) | Minus/Plus |
Query 71 LDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSR 205 ++ EG +IC KE D H+ E+KLPC+VRG+TF+ VT + + Subject 7130 VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 3: 6493 to 6585 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 13/31(42%) | 0/31(0%) | Minus/Plus |
Query 704 MTEEEVEAHYNCVRFLVRNKHKMRCSISGLF 796 ++ E++AHYNCVRF++ + H ++ +I LF Subject 6493 LSPHEMDAHYNCVRFIILHNHLLKSNIKDLF 6585
Range 4: 6811 to 7038 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 29/76(38%) | 0/76(0%) | Plus/Minus |
Query 294 PNLQVLDLMKCASLGILIFWYGSENSTSKPEMS*TDKYSSSIFTFPCTAHPGE*CLMYLPVRLGLSGTPAVKATKL 521 PNL MK A FW GSEN KP D+YSS + P P L+ +P SGTP V A+ L Subject 6811 PNLCEQRPMKWARRQSP*FW*GSENKQLKPVEYSPDRYSSKMLKLPLPL*PCLAFLI*VP*MFAFSGTPKVTASIL 7038
Nucleotide Sequence (413 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
197.2 | 802.1 | 22% | 6.432e-50 | 48% | NC_001948 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1730 to 2119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.2 bits(427) | 0.0 | 88/130(68%) | 0/130(0%) | Plus/Plus |
Query 3 EVQNSYKVGLFKHIKALTYCFNSCGLQWFLLRRRSNLKFLKDGASSFANLSCEVIKAYKSVVLQATLPEALLSLTKVFIRDSDLNDVFTSELISNDESVGLVCSAGSTSEKSQSVNCEASRVPVSSSSTQ 392 EV++SYKVGLFKHIKALT+CFNSCGLQWFLLR+RSNLKFLKD ASSFA+L CEVIK Y+ V QA LPEALLSLTKVF+RDSD V L+S +E L A S E+ QSV+C A RV S SS+Q Subject 1730 EVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSSQ 2119
Range 2: 1729 to 2118 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 87/130(67%) | 0/130(0%) | Minus/Minus |
Query 2 WVLEELTGTLLASQLTDCDFSEVEPAEQTSPTDSSFEINSEVKTSFRSESLMKTLVRLSRASGRVACNTTDL*ALITSQLRLAKDDAPSFXXXXXXXXXXXNHWRPQELKQ*VRAFMCLKRPTL*EFWTS 391 W LE L TL A Q TD S E A S + S E N ++T F SESL KTLV+LSRASG +AC+ T * LITSQ R AKDDA SFRNLRLDL LRRNHWRPQELKQ*VRAFMCLKRPTL*E TS Subject 1729 WELETLA*TLPALQSTD*GSSRAELAG*ASSSSSFLETNLGMETPFESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTS 2118
Range 3: 1728 to 2126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 70/133(53%) | 0/133(0%) | Plus/Plus |
Query 1 VRSKILTKWVFLST*KPSLIVSILVVSNGSFLGEGPTSSF*KMEHRPLLILVVRLSRPTSLLCYRQPSLKLC*A*LKFS*EILI*MMFSPLN*SQMMSQSDWFVQQVQPLRNHSQSIVRLAEFQ*ALQAPSCL 399 VR ++ +W FLST*KPSLI ILV SNGS LG+GPTS+F*+ HRPLLIL+VRLS+ SL +RQ L+LC A* K IL +F + S+ MS + Q +QPLR+ +Q IV A F+ A Q PS L Subject 1728 VRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSLSGILTQRVFPFPDWSREMS*RN*LTQLIQPLRSLNQLIVMQAGFKQAFQVPSSL 2126
Range 4: 1745 to 1990 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.1 bits(247) | 0.0 | 49/82(60%) | 0/82(0%) | Minus/Minus |
Query 18 NII*IRISYENFS*A*QSFREGCL*HNRLVGLDNLTTKISKGRCSIFQKLEVGPSPKKEPLETTRIETISEGFYVLKKTHFV 263 N +*+RI ++F A QS R+ CL* +L+ DNLT KISKGRC + QK EVGP PK+EPLE TRI+ +SEGFYVLKK H + Subject 1745 NTL*VRIPDKDFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLI 1990
Range 5: 1729 to 1923 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 47/65(72%) | 0/65(0%) | Plus/Plus |
Query 2 *GPKFLQSGSF*AHKSPHLLFQFLWSPMVPS*AKVQPQVSERWSIVLC*S*L*GYQGLQVCCVTG 196 *G KFL G F*AHKSPH L FLW PMVP *AKVQPQ+SE IVLC*S*L*GYQ L C +TG Subject 1729 *G*KFL*GGPF*AHKSPHSLL*FLWPPMVPP*AKVQPQISEGQGIVLC*S*L*GYQSLSACNITG 1923
Range 6: 1728 to 1922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 44/65(68%) | 0/65(0%) | Minus/Minus |
Query 1 PVTQQTCRP**PHN*D*QRTMLHLSET*GWTFA*EGTIGDHKN*NNK*GLLCA*KDPLCKNFGPH 195 PV Q + **PHN D QRTM SE *GWTFA* GTIG HKN*+N+*GLLCA*K P +NF PH Subject 1728 PVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN*SNE*GLLCA*KGPPYRNF*PH 1922
Nucleotide Sequence (443 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
323.6 | 1005.1 | 19% | 6.287e-88 | 51% | NC_001948 | |
122.0 | 308.5 | 38% | 2.356e-48 | 51% | NC_008020 | |
107.8 | 248.8 | 28% | 3.716e-43 | 55% | NC_018175 | |
111.5 | 323.8 | 20% | 1.793e-42 | 42% | NC_010538 | |
107.8 | 304.9 | 17% | 7.698e-44 | 42% | NC_031089 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6329 to 6769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
323.6 bits(700) | 0.0 | 131/147(89%) | 0/147(0%) | Plus/Plus |
Query 2 WERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR 442 WERICIAREMGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVG++SVL+FPVV+HSVPGSGKSSLIREL++EDE+FIAFTAGVPD+PNL+GR Subject 6329 WERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGR 6769
Range 2: 6328 to 6621 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 77/98(79%) | 0/98(0%) | Minus/Minus |
Query 1 PTNSNVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQ 294 PTNSN D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SPS A*+TSIA*LS+QFSRLPIS AM I SQ Subject 6328 PTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPISLAMHIRSQ 6621
Range 3: 6706 to 6768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 18/21(86%) | 0/21(0%) | Minus/Minus |
Query 379 LPERLGVSGTPAVKAMKLSSS 441 LP RLG+SGTPAVKAMK SSS Subject 6706 LPVRLGLSGTPAVKAMKFSSS 6768
Range 4: 6329 to 6769 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.3 bits(350) | 0.0 | 77/147(52%) | 0/147(0%) | Minus/Minus |
Query 2 PPREVGSVGNAGRKGYETLVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*IIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCLNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSLP 442 P E+ +V N + YE L+L + Y*TTFTTTR+ MN+ WK +H NT+KLK Q FN*IIHN MPNT*GLI SFK N*A HL+L+ + E +T+++ L+F HHFN L+Q V IG L I++N +LQV H SNA LP Subject 6329 PSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLP 6769
Range 5: 6330 to 6692 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 65/121(54%) | 0/121(0%) | Minus/Minus |
Query 3 LLNYFYHYQERYEQQLEI*ARYKYPQTQT*TKL*LNYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVPQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFSP 365 LLNYFYHYQ YE LEI*A K+ QTQ T L*LNYS* S++AK+LRPN *LQ KLS SS A * H+ + P L SSFQ P HR P H+ Q +SPG P QC +P Subject 6330 LLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAP 6692
Range 6: 6328 to 6618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 52/97(54%) | 0/97(0%) | Plus/Plus |
Query 1 LGENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*GTLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*FS*SFVYV*VC 291 LG ++HC +G PGEL+* LC+ G+LC+ GR +*ND+ S G L LC + + A DE+LNF +*SY LGLK LA +YYE*FS*S V +*VC Subject 6328 LGADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VC 6618
Range 7: 6676 to 6747 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 14/24(58%) | 0/24(0%) | Plus/Plus |
Query 349 *K*FNKRTCH*GREFHSLYGRRSR 420 *K*FNK G EFHS + R SR Subject 6676 *K*FNKGANFRG*EFHSFHSRCSR 6747
Range 8: 6330 to 6572 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 41/81(51%) | 0/81(0%) | Plus/Plus |
Query 3 GREFALLVKWVTWRTALITMQLRYPMPTGWASCQLK**MKRKLRHTTTVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV* 245 G +ALL +W TWR L M+ R PM T W S LK** ++K R V S S R* AQF LKL IRP*VFG++* Subject 6330 GSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII* 6572
Range 1: 5874 to 6116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
122.0 bits(260) | 0.0 | 51/81(63%) | 0/81(0%) | Plus/Plus |
Query 5 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI 247 ER+CIA+E NL NCIDNYAIEVSYAY+LGEL++ MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ + GV+ Subject 5874 ERLCIAKETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM 6116
Range 2: 6153 to 6344 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.4 bits(191) | 0.0 | 39/64(61%) | 0/64(0%) | Plus/Plus |
Query 251 MNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR 442 M+ LV F F + SVLR PV+ H VPG+GKS+LIREL+ D FIAFTAG PD PNLSGR Subject 6153 MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGAGKSTLIRELINRDHRFIAFTAGEPDPPNLSGR 6344
Range 3: 5885 to 6115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 39/77(51%) | 0/77(0%) | Minus/Minus |
Query 16 ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAM 246 ITP + + I+ N EIE CLF T TQL AS SSSFI NSPSL A*+TS+A*LS+Q +L +S A+ Subject 5885 ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVSFAI 6115
Range 1: 5702 to 5908 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 40/69(58%) | 0/69(0%) | Plus/Plus |
Query 5 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA 211 ER+CIA+E NL NCIDNYAIEV++AY+LGE ++ M+EEE+EA YNCVR +V+NKH R ++ +F + Subject 5702 ERMCIAKETDNLRNCIDNYAIEVAFAYKLGERAVNRMDEEELEAFYNCVRIIVKNKHHCRSNVVEVFSS 5908
Range 2: 5949 to 6146 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 36/66(55%) | 0/66(0%) | Plus/Plus |
Query 245 IIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR 442 ++M+ LV L+ + F I+S L P+VVH VPG+GK+SLIREL+ D F+A+TAGV D P+LSGR Subject 5949 LLMDVLVDLLNKYSFTRIHSKLSSPIVVHCVPGAGKTSLIRELIKLDSRFVAYTAGVEDEPHLSGR 6146
Range 3: 5698 to 5871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 32/58(55%) | 0/58(0%) | Minus/Minus |
Query 1 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILSQ 174 CLF T TQL* AS SSS I SP+L A TS+A*LS+QF RL +S AM + S+ Subject 5698 CLFFTIILTQL*KASNSSSSIRFTARSPNLYAKATSMA*LSIQFRRLSVSFAMHMRSR 5871
Range 1: 5738 to 5941 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.5 bits(237) | 0.0 | 41/68(60%) | 0/68(0%) | Plus/Plus |
Query 5 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFE 208 ER+CIA E+ NL NCIDNYAIEV+YAY LGE ++ M+EEEV A YNCVR ++RNKH ++ + G++E Subject 5738 ERMCIAMELNNLHNCIDNYAIEVAYAYSLGEKAVNRMSEEEVGAFYNCVRIIIRNKHLLKSEVRGVYE 5941
Range 2: 6013 to 6210 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 33/66(50%) | 0/66(0%) | Plus/Plus |
Query 242 VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSG 439 +I M+ +V L F F + + L P+VVH VPG+GKS+LIREL+ D F+AFTAG+ D P+L+G Subject 6013 LIPMDVIVSLLEKFGFTRLRTKLELPIVVHCVPGAGKSTLIRELINADPRFVAFTAGIEDEPSLTG 6210
Range 3: 5737 to 5943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 37/69(54%) | 0/69(0%) | Minus/Minus |
Query 4 ASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS 210 +S P CLFL RTQL* A TSSS + SP *A TSIA*LSMQ RL S AM ILS Subject 5737 SS*TPRTSDFXRCLFLMIIRTQL*KAPTSSSLMRLTAFSPRE*AYATSIA*LSMQLCRLFNSIAMHILS 5943
Range 1: 5759 to 5959 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.8 bits(229) | 0.0 | 40/67(60%) | 0/67(0%) | Plus/Plus |
Query 5 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 205 ER+CIA+E NL NCIDNYAIEVSYAYRLGE ++ M+EEE A YNCVR +++NKH ++ ++ L+ Subject 5759 ERMCIAKETNNLANCIDNYAIEVSYAYRLGEKALNRMDEEEAAAMYNCVRIIIKNKHLLKSDVATLY 5959
Range 2: 6007 to 6207 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.5 bits(189) | 0.0 | 34/67(51%) | 0/67(0%) | Plus/Plus |
Query 242 VIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGR 442 V+ M+ LVK L+ + F+ + +R PVV+H VPG+GK+SLIRE++ D F+A+T G+PD PNL GR Subject 6007 VLYMDILVKYLNKYNFIRLSQSIRPPVVIHCVPGAGKTSLIREIIQADSRFVAYTCGIPDKPNLEGR 6207
Range 3: 5759 to 5929 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 24/57(42%) | 0/57(0%) | Minus/Minus |
Query 5 VLISN*EPHTVVVCLNFLFIHHFN*QLAQPVGIGYLNCIVINAVLQVTHFTSNANSL 175 VLI N PHT+V C FLFIH QP+ + LN I+++ + ++ SNA+SL Subject 5759 VLILNDYPHTIVHCSCFLFIHSIQCFFTQPICVRDLNGIIVDTICKIIRLLSNAHSL 5929
Range 4: 5758 to 5928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 32/57(56%) | 0/57(0%) | Minus/Minus |
Query 4 CLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQILS 174 CLFL TQL A+ SSS I SP+ A*+TS+A*LS+QF+RL +S AM ILS Subject 5758 CLFLMIILTQLYIAAASSSSIRFNAFSPNRYA*ETSMA*LSIQFARLFVSLAMHILS 5928
Nucleotide Sequence (951 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
446.4 | 1208.7 | 33% | 1.817e-124 | 39% | NC_001948 | |
57.4 | 57.4 | 9% | 2.322e-07 | 29% | NC_009892 | |
55.1 | 55.1 | 9% | 1.136e-06 | 27% | NC_018714 | |
55.1 | 55.1 | 9% | 1.136e-06 | 33% | NC_009383 | |
55.6 | 55.6 | 7% | 8.272e-07 | 30% | NC_005343 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1196 to 2131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
446.4 bits(968) | 0.0 | 196/312(63%) | 0/312(0%) | Minus/Plus |
Query 6 SLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMDGSWFGLGNLHFNRQRAPYSLGVSHWINSPFSVEHKFAGVINHQILYVALSLVPLSDDPSFKLTSREVDSALSSVRMALGVTGQSKLFGFLVNNTFINEVQRGYKLRLAQHLKSLTWLFHFCGCQWFLLCRRTNLKFLSDRKSSFADLDCGVAKIYSLVSAQAIAPGVLSGLTKVYSFGSNSQQKLISSNVLEGKLCESVQSPNAHFGETLVSHDQEGKVVTSTPHTSQLLD 941 SLLMPNISKLV+SF CRMMPNALARLSSSFRE SLDSFVY+LEPFNFSVNL+DITPDFFEHLFLFSCLNELI ED+EEVMD SWFGLG+L FNRQRAP+ LG S+W+NS FSVEHKF+G IN QI+ V LSL+P SDDP+F+ +S EV+ ALS V+ AL TGQSKLF FLV++ + EV+ YK+ L +H+K+LT F+ CG QWFLL +R+NLKFL DR SSFADLDC V K+Y LV++QAI P L LTKV+ S+S+ I V +L E N+ E G+V S + QL D Subject 1196 SLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTINSQIMQVILSLIPFSDDPTFRPSSTEVNLALSEVKAALEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSSQQLAD 2131
Range 2: 1195 to 1806 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.1 bits(485) | 0.0 | 119/204(58%) | 0/204(0%) | Plus/Minus |
Query 331 QPQK*KSQVSDFKC*ASLNLYPLCTSFMKVLFTKKPKSFDCPVTPRAILTLERAESTSLEVNLKEGSSDNGTKDRATYRIWWLMTPANLCSTENGELIQCDTPREYGAL*RLKCKLPSPNHEPXXXXXXXXXXXXLRQENKNRCSKKSGVISIKLTEKLKGSRA*TNESSEVSRKLEDNLAKALGIIRHKNDITSFEILGINRE 942 +PQ+ K V F C L L TS + TK +FDCPV A LT + A TS+E LK GSS+NG KD+ T I LM P NLCSTEN EL Q + PR+ GAL RL CK PSPN E S+TSS SS+I+S RQE +N+CSKKSGVIS KLTEKLKGS TNESSE SRKLE++LA A GIIR KND+T+ E+LGI++E Subject 1195 RPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASSAALTSDSARLTSVEDGLKVGSSENGIKDKITCMI*ELMVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKE 1806
Range 3: 1794 to 1940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 20/49(41%) | 0/49(0%) | Plus/Minus |
Query 197 KPQGR*PELKPSYRF*QHHNQGQQRRTFGHLEI*GWFFGTEETIDNHRN 343 +PQ P + + + * HNQ QQR EI*GW F TI H+N Subject 1794 EPQEVLPVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN 1940
Range 4: 1196 to 1642 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.4 bits(252) | 0.0 | 61/149(41%) | 0/149(0%) | Plus/Minus |
Query 495 INFPRSQLKRRII*QWDQGQSNIQNLVVNDTCKLVLNREWRVDPV*HP*GIWSPLTIKVQIAKSKP*AVHNFLNILCNQLIEAGEQK*MLKEVRGNIDQVNREVERLKSIDK*VK*SFAET*RQPG*GIRHHSTQK*HYQL*NIRHQ*R 941 +N R K II +WDQ +N+ +L ++ KLVLN ++ V+P+* P PL I++ + KSKP VH+ N+L +QLI AGE+K*MLKE+R I +N +++ LK + K*+ + ++ R+PG I HH ++*+ QL N+ H+ R Subject 1196 VNLCRRWPKSGIIRKWDQR*NNLHDLRIDGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQR 1642
Range 5: 1682 to 1903 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 32/74(43%) | 0/74(0%) | Plus/Minus |
Query 234 IDFSNTTIKVSKGGLSVT*KFEVGSSAQKKPLTTTEMKEPSQ*FQVLSKP*LIPSLHLIYESVIH*EAKKL*LP 455 I+F N TIK+SKG V KFEVG +++PL T +K S+ F VL K LI + +L + +V+H + ++ *LP Subject 1682 INFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LP 1903
Range 6: 1213 to 1629 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.2 bits(184) | 0.0 | 54/139(39%) | 0/139(0%) | Minus/Plus |
Query 508 YFKAGNVIFVSNDA*CLSQVVFKFPRNFT*LICLCS*AFQLLC*LDRYYP*LL*ASIFVLLPQ*ADCRGY*GSYGRLMVWTWQFAL*SSEGSIFPRGVTLDQLSILC*AQVCRCH*PPNSVCCSVLGPIVR*SFF*VDF 924 +F G++I + +DA C Q +F R F IC+ +*A * Y * L*A I +LLP+* D G * +G+ +VWTW + S EG + L QL I *AQV R H N + PI *S F* F Subject 1213 HF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYNS*FL*AFISLLLPK*VDRGGR*RGHGQFLVWTWGLTIQSPEGPVLSWVFILAQLQIFS*AQVFRHHQFSNHASYFIFDPIF**SHF*AIF 1629
Range 7: 1677 to 1952 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 36/92(39%) | 0/92(0%) | Minus/Plus |
Query 185 LQGSQSFLAS**ITLS*MRCREGIS*GLLNT*NH*LGSFISVVVNGFFCAEEPTSNF*VTESPPLLTLIVVLLKSIAWFQLRLSPLGFCQA* 460 L GSQ+ T+ +R I L+T* L + I V NG + PTSNF* T PLL LIV L K I+ R L C A* Subject 1677 LLGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA* 1952
Range 8: 1374 to 1631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 36/86(42%) | 0/86(0%) | Plus/Minus |
Query 506 *KST*KKDHLTMGPRTEQHTEFGG**HLQTCAQQRMES*SSVTPLGNMEPSDD*SANCQVQTMSRP*LPQYPLQSAH*GRRTKIDA 763 *K *K DH MG + + F * L+TCAQ ++ S*+++ PS D* + QVQT + P* Q P +S H GRR +I+A Subject 1374 *KMA*KWDHQKMGSKIK*LA*FEN*WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINA 1631
Range 9: 1861 to 1980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 20/40(50%) | 0/40(0%) | Plus/Minus |
Query 157 ELEPKEYTLVKPDKTPGAIA*AETKL*ILATPQSRSAKED 276 E E TLVK + G+IA T * L T QSRSAK+D Subject 1861 ESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDD 1980
Range 10: 1377 to 1484 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 20/36(56%) | 0/36(0%) | Minus/Plus |
Query 653 IYFCSPASMS*LQRILRKLWTAHGLDLAICTLIVRG 760 IYF SPA MS* +R L++ WT GLDL I RG Subject 1377 IYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARG 1484
Range 1: 1193 to 1453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 25/87(29%) | 0/87(0%) | Minus/Plus |
Query 690 TGSSLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMDGSW 950 T ++ L+PN+ KL+ +F + P+++AR F++ SLD+F+ +E FNFSV I+ + + + ++ DI+ + W Subject 1193 TVNTKLLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW 1453
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 1204 to 1449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 22/82(27%) | 0/82(0%) | Minus/Plus |
Query 690 LMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMDGSW 935 ++P++ ++V F ++ PN ++R ++ LD+F+ LE FNFS+N D++ ++ + L + I ++EE +W Subject 1204 MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW 1449
Range 1: 1190 to 1432 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 27/81(33%) | 0/81(0%) | Minus/Plus |
Query 699 SLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLFSCLNELIAEDIEEVMD 941 +L+ P + K + MP+ LA SS E SLD FV +EPF F V L+D+ ++ + LFS E D+ ++++ Subject 1190 TLIKPEVIKQFLGRWLGKMPHVLAVRFSSVAEVSLDEFVSQMEPFTFQVKLVDVDWNYHHNWDLFSKAEEDYGVDVCDLLN 1432
Range 1: 1189 to 1386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 20/66(30%) | 0/66(0%) | Minus/Plus |
Query 747 SSLLMPNISKLVMSFLCRMMPNALARLSSSFRETSLDSFVYALEPFNFSVNLIDITPDFFEHLFLF 944 SS++MP+ K + FL ++P+ +R+ +++RE +LD+F+ L PF+F L + ++ L + Subject 1189 SSIIMPDYKKKIAGFLAGLLPHFASRMFAAYREVTLDNFISTLRPFSFIQPLSSLDESLWDELHFY 1386
Nucleotide Sequence (941 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
372.7 | 2422.5 | 32% | 0 | 49% | NC_001948 | |
263.6 | 854.4 | 27% | 7.772e-113 | 29% | NC_014821 | |
271.0 | 786.3 | 34% | 2.008e-112 | 27% | NC_009892 | |
273.2 | 857.4 | 55% | 6.744e-115 | 31% | NC_003462 | |
254.9 | 699.7 | 46% | 2.119e-109 | 31% | NC_018714 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5189 to 5695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.2 bits(795) | 0.0 | 151/169(89%) | 0/169(0%) | Plus/Plus |
Query 423 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK 929 WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYE TQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN+ + EAV+EFE KKASKSAATIENH+GRSCRDWLLDVALIFMKSQH TK Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEMTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTK 5695
Range 2: 4775 to 5137 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
291.6 bits(630) | 0.0 | 117/121(97%) | 0/121(0%) | Plus/Plus |
Query 9 LTLTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ 371 LTLTFGESTGLNFK+GGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFF+GFNVS+G+NEGVREEKLCGDPWLKVMLFLGQ Subject 4775 LTLTFGESTGLNFKNGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFSGFNVSIGKNEGVREEKLCGDPWLKVMLFLGQ 5137
Range 3: 5188 to 5694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.7 bits(604) | 0.0 | 127/169(75%) | 0/169(0%) | Minus/Minus |
Query 422 LVWC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLNH 928 LV C DFIKIRATS+NQSL DLP *FSIVAALLLAFF+SNS TAS L LAF+G +RK S++NFPYG ARL+LAAST GFEN RRF TAMRKV ES PLCLG MLSNLSHALL+CS +P LCSSKNC V+S*P TSR SF AI PTHLALVDS+LL G+WVLNH Subject 5188 LVQCCDFIKIRATSNNQSLHDLPA*FSIVAALLLAFFASNSCTAS*NMMEL*LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*MLSNLSHALLSCSPVPPLCSSKNC*VIS*PQRTSRYSFKAILPTHLALVDSRLLKGMWVLNH 5694
Range 4: 4774 to 5007 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 65/78(83%) | 0/78(0%) | Minus/Minus |
Query 8 ITFSPLFAVKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKVSVS 241 +TFSPL AVKK * G PAKC+RKLSTL+PVMFT+S+LWLKRDKAV+HRRSSV*KESCD+RIPP LKFNPVDSP VSVS Subject 4774 MTFSPLLAVKKW*RGLPAKCERKLSTLRPVMFTKSKLWLKRDKAVSHRRSSV*KESCDMRIPPFLKFNPVDSPNVSVS 5007
Range 5: 5068 to 5121 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 14/18(78%) | 0/18(0%) | Minus/Minus |
Query 302 MTFSQGSPHSFSSLTPSF 355 +TF+ GSPH+FSSLTPSF Subject 5068 ITFNHGSPHNFSSLTPSF 5121
Range 6: 4775 to 5695 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
372.7 bits(807) | 0.0 | 170/307(55%) | 0/307(0%) | Minus/Minus |
Query 9 FGVVLRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFGSFDLRL*KF*TFPHGHEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHIFPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTESKRE 929 F VL LHKN NI PIP T MI Y CT L LK + F I+ QW+ E + *+ PIW PQFGSF+L L KF T HE+G+*II+FM WV AFK TC+AQLL SSTP+ IKELL FITT+H + Q H ++PPGPG* Q+T D+GFKPF I*AF L L NF ILIL +EKH+ *P +TT LLL + FI NAN++ +EV LT +Q+ Y I P F C*K++E F SK+R+K FHPQT DVH I+IVA+ R*S +PP IICVKGIM*Y+N + E+QPS FT+ + E Subject 4775 FSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDFG*ERI**EFPIWFGPPQFGSFNLGLRKFETLSDSHEEGY*IISFMPWVNAFKPLTCIAQLLTSSTPMLIKELLSHFITTTHLPILFQGHFTHPPGPG*LQITQGDVGFKPFFI*AF*LHLFNFTILILTQEKHNF*PWVTT*LLLPNTFILSNANVKATEEVRLTWEQISYDILPTFGC*KMVEGFASKVREKTFHPQTCDVHQIQIVAEAR*SSKPPPIICVKGIM*YENSPIFEIQPS*FTKCECE 5695
Range 7: 4770 to 5513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
293.9 bits(635) | 0.0 | 140/248(56%) | 0/248(0%) | Minus/Minus |
Query 4 GKCQVETSHMALRASIWQLRLEALKILDVSSRP*ERSLNHCLYVLGICFQIFHMRCSIARFFHTCVHQRTVGSFHNHISLHGVPSTPSFQPTWPWLIPSYLMGYGF*TIPHLSIQTQAPQLRNPHLGQGKA*PLAKDHHTASPLSPLHSAQR*H*NH*RSWAHREASPLSHFPRFLLLKSDRAVSQQNATESFPPSNR*CSLDQDCG*NEIKLSTTGDHLCERNHVI*ESLHA*SSTQ*IHRK*A*AI 747 GK + SHM AS+WQL+ A KI D +P* R LNH LY LG CFQ HM CS+A FH HQR V SFHNH + S P + PTWPWL P Y G GF*TI HLSI T + QL NPHL GKA* L HH SP LHS Q * *+H*RS AH A+ + H P F LLK+ R V QQ+A E+FPPS+ *CS + +CG*+EIK T DHLCERNHVI*E H *+STQ IH+ * *A+ Subject 4770 GKNLIRISHMVWPASVWQLQPGASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQFHPYAHQRIVESFHNHNAPPDTLSRPFYPPTWPWLTPDYSRGCGF*TILHLSILTPSLQLHNPHLDPGKA*LLTMGHHITSPP*HLHSFQC*R*SH*RS*AHLGANLV*HSPHFWLLKNGRGVCQQSARENFPPSDL*CSPNPNCG*SEIKQ*ATADHLCERNHVI*EFPHF*NSTQLIHQM*V*AV 5513
Range 8: 5619 to 5684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 12/22(55%) | 0/22(0%) | Minus/Minus |
Query 853 VETS*KLGQHPATNPYKIYRND 918 V TS*K QH TNP Y +D Subject 5619 VVTS*KSEQHLITNPCMTYLHD 5684
Range 9: 4791 to 5531 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.7 bits(602) | 0.0 | 144/247(58%) | 0/247(0%) | Plus/Plus |
Query 25 VNLLG*TSSMEGFLYHMIPFTQMIAGG*QLYLVLATILI**TSPV*GWKAFCRILLGNRSITF*QQKAGKM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRSLSLNAQMRNGLKPISH*VTWNQPGPGGLERWR*RNTVK*DVVMKRPNSSLMNTGVEEASN*ATHVKDLKAYTQDIKAMIQ*PFSWP*GNV*NFQSLKSKLPN*GAQSHMGSFYLTLSFQRFH* 765 VN LG* S M F YHMIPFTQMI GG LYL ATI I *TS V*GWK F R LL N S F*Q K G+M C VS TS + LAL MK RRS VV G*+ CFS KMRI KL+ S NAQM+NGLKP S *V W+QPGPGG +W *++ + VVMK N+SLM+ GVE SN*A HV+ LKA+TQ IK MIQ*P SW +V NF+S + KLPN*G +HMG+ Y LS+ + H* Subject 4791 VNQLG*ISKMGEFSYHMIPFTQMIGGGLLLYLASATIWIW*TSQV*GWKVFSRTLLANPSTIF*QPKVGRMSYEICSQVSLTSSVALTLALERMKVLGRRSYVVTHG*KLCFSWVKMRIVKLKRWSQNAQMKNGLKPTSP*VIWSQPGPGGWVKWP*KSIGRCVVVMK*LNNSLMSIGVELVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*GGPNHMGNSY*ILSYPKSH* 5531
Range 10: 5619 to 5696 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.4 bits(47) | 0.0 | 15/26(58%) | 0/26(0%) | Plus/Plus |
Query 853 IIPVDLVGIGCWMLP*FL*SLNTTPN 930 I+ V GIG ML *FL*S NT N Subject 5619 IMQVGHAGIGY*MLL*FL*SHNTVLN 5696
Range 11: 5095 to 5685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
187.1 bits(402) | 0.0 | 96/197(49%) | 0/197(0%) | Plus/Plus |
Query 329 VW*SLAKGHAFPWPR*GLRS*GA*V*MLK*GMV*NPYPIK*LGINQGQVGWKDGVEGTP*SEMWL*NDPTVL**TQVWKKRAIEQRM*KI*KHIPKT*RQ*FSDLSHGREETSKIFKASSRSCQIEARKAIWEVST*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFYEVST 919 +W* + K +AFP R*GL S* V MLK* MV*NP+P++* G+NQGQVG +G+E +WL*ND T+L** W A EQ M*++*KH+PK *R+*F++L HG + S+IF+A SCQ EA + IWE+ FP + E + +*S +*G+E +CS+ R+S R*++ GLV CC +FYEV+T Subject 5095 MW*PMVKSYAFPGSR*GL*S*RDGVRMLK*RMV*NPHPLE*SGVNQGQVGG*NGLERVSGGALWL*NDSTIL**A*GWNW*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIESQS*FHHVS*SGTGV*GEEG**ECSNYRESCR*VMQGLVIRCCSDFYEVTT 5685
Range 12: 4774 to 5064 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 55/97(57%) | 0/97(0%) | Plus/Plus |
Query 8 AHAYFR*IYWVELQAWRDSYIT*FLSHR*SPVVDXXXXXXXXXXXXEHHRFEGGKLSVAFCWETALSLFNSKKRGKCDKGLASR*AQLL*WFQC*RW 298 AH + *I WVE Q W +S+IT*FLSHR*S V FIS PQ EHHR EGGK S+A CW+T L FNS+K G+C A R*A LL W * W Subject 4774 AHTHIW*INWVEFQKWGNSHIT*FLSHR*SAVAYCFISLQPQFGFGEHHRSEGGKFSLALCWQTPLPFFNSQKWGECHTRFAPR*A*LLQWL*R*HW 5064
Range 1: 5242 to 5748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 108/169(64%) | 0/169(0%) | Plus/Plus |
Query 423 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK 929 WFKTH+P+ LE+ RA+WV ++ KE RE R G TT+QF DEH R +L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VPL+ H++ +M AV FEEKK SKS ATIENHSGRSC DW +D ALIFMKSQ TK Subject 5242 WFKTHVPIMGLEAVRAQWVSRLLAKEDREFRIGDITTEQFTDEHSKNRGLELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAVHAFEEKKLSKSMATIENHSGRSCEDWPIDKALIFMKSQLCTK 5748
Range 2: 4834 to 5190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.6 bits(355) | 0.0 | 66/119(55%) | 0/119(0%) | Plus/Plus |
Query 15 LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ 371 +T+GESTGLNF+ G IL++++S T DRRW TALSRFSH++ +N G+ ++ L+HF GKPL+ FLT ++ + I DLLPG P GF VG +EGVRE KL GDPWLK +FLGQ Subject 4834 ITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNALTHFVGKPLHKFLTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ 5190
Range 3: 5244 to 5735 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 84/164(51%) | 0/164(0%) | Minus/Minus |
Query 425 *DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 916 *DF+ I+A S QS Q+ PE FSIVA L +FFSS + TA+SI L L GT +KVS RNFP G A LNLA S G E F TA++ V S+PLCLG M S LS AL++ S L LCSS NC VV P SR S + TH AL S + G VLN Subject 5244 *DFMNIKALSIGQSSQERPEWFSIVAILFESFFSSKA*TANSIISLLCLRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*MASYLSAALVSSSPLFLLCSSVNCSVVMSPIRNSRSSLASNLLTH*ALTASSPIIGT*VLN 5735
Range 4: 4842 to 5018 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 26/59(44%) | 0/59(0%) | Minus/Minus |
Query 23 GFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSP 199 G P KC + LS + P+ F + L D+AV+H RS V S RI P K PVDSP Subject 4842 GLPTKCVKALSQVTPIPFIK*IS*LNLDRAVHHLRSLVKALS*VTRIAPF*KLRPVDSP 5018
Range 5: 5124 to 5174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 10/17(59%) | 0/17(0%) | Minus/Minus |
Query 305 MTFSQGSPHSFSSLTPS 355 + F+QGSP S +S TPS Subject 5124 LVFNQGSPTSLASRTPS 5174
Range 6: 4837 to 5748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.6 bits(259) | 0.0 | 87/304(29%) | 0/304(0%) | Minus/Minus |
Query 18 FGVVLRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFGSFDLRL*KF*TFPHGHEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHIFPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEVQPSRFTES 929 F LRLH+ I PI T +T M+ T F K +S H + IQ + ++ +K K PQFG F + * F + H + I + MSWV F F+CV + VFI EL + S F++ L ++P P + W M +P L K++ F + LAKE L*P I+ LS+ I PN ++T ++ Q+ I + *K+++ F +KM Q ++ + I+ K *S PPA+ ++ ++N +L+++ S T S Subject 4837 FRAQLRLHEYQSFIDWPILTGTTRMVLNSGHTL*EFFLFKGMNSKFHHFTAMLAIQRDSLQKGIKEKFSKGASPPQFGMFSSWRGEA*PFLYSH*ERGGISSLMSWVNGFIPFSCVGEFKPPIFTVFISELFCGDVPNSEFSILLS*QPADPLSPNSLEPHYWHMSLEPILRCLDLFKII*FKVWRLAKEDLSL*PGISN*FSLSNALICPNLALKTFNQLWAAR*QINNVIIASSLG*KLMQGFTNKMCQGIVPSDPHSIYKMNIMTKPG*SSPPPAVAG*STLISHENSPLLKIKTS*LTIS 5748
Range 7: 5400 to 5561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 22/54(41%) | 0/54(0%) | Plus/Plus |
Query 581 QRM*KI*KHIPKT*RQ*FSDLSHGREETSKIFKASSRSCQIEARKAIWEVST*H 742 QR *K+* H+PKT* *+ + +G +E K+ +S +CQIE +W++S *+ Subject 5400 QRS*KV*SHLPKT*GN*YRHVLNGCKEKVKLLLSSC*TCQIEEGSPLWKISP*Y 5561
Range 8: 5003 to 5245 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 27/81(33%) | 0/81(0%) | Plus/Plus |
Query 184 ILLGNRSITF*QQKAGKM**GTCFPVSPTSLMVSMLALGGMKG*ERRSCVVILG*RSCFSLAKMRIAKLRSLSLNAQMRNG 426 ILL N I+F* ++ M C+ + + L V LG M+ ER + + I G*R SLA ++ L + Q R G Subject 5003 ILLVNPCISF*PRELAMMTLLICYLAAQS*LKVFRAKLGQMRAFERLN*LEIPG*RLRSSLASLQTLN*MILKRSKQRRIG 5245
Range 1: 5087 to 5593 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.0 bits(585) | 0.0 | 112/169(66%) | 0/169(0%) | Plus/Plus |
Query 423 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK 929 WFKTHIP+ LE+ RARWV K+ KE RE R G+E T+QF DEH +Q++NA ER+E+IYPRHKG DSVTFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +PL H+++LM +AV +FEEKK SKSAATIENHSGRS RDW +D ALIFMKSQ TK Subject 5087 WFKTHIPVFPLEAVRARWVHKILAKEAREFRVGHEVTEQFIDEHSKNPGKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTK 5593
Range 2: 4679 to 5035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 63/119(53%) | 0/119(0%) | Plus/Plus |
Query 15 LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ 371 LTFGESTGLNF+ G I +S++S T +RRWLTALSRFSH + +N + + +S F GK L F + ++ + + DLLPG+P F GF V++GR+E VRE KL GDPWLK +FLGQ Subject 4679 LTFGESTGLNFQKGAIFVSYESSLTSERRWLTALSRFSHEIHFINGLSIEWSNVMSLFHGKALNKFFSKRASHDDVVDLLPGKPEFIEGFQVNIGRDEEVREPKLSGDPWLKTAIFLGQ 5035
Range 3: 5236 to 5592 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 66/119(55%) | 0/119(0%) | Minus/Minus |
Query 572 LVWC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNC 928 LV DF+KI A S+ QSL + PE FS+VAALLL+FFSS S TA +R L G + RKV RN P G A LNLA S G+E FLTA+R VTES+PLCLG ++S LS AL+ C Subject 5236 LVQSWDFMKISALSTGQSLLERPEWFSMVAALLLSFFSSKSLTAFDMRSLSCLPQRGIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*IVSYLSAALVIC 5592
Range 4: 5089 to 5220 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 25/44(57%) | 0/44(0%) | Minus/Minus |
Query 425 LCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 556 LCSS NC V S*P L S SF +I THLAL S+ G+ VLN Subject 5089 LCSSINCSVTS*PTLNSLASFASILCTHLALTASRGKTGMCVLN 5220
Range 5: 4681 to 4794 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 22/38(58%) | 0/38(0%) | Minus/Minus |
Query 17 WLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKV 130 WL R++AVNH S V + S D +I P KF PVDSPKV Subject 4681 WLNRERAVNHLLSLVRELS*DTKIAPF*KFRPVDSPKV 4794
Range 6: 4706 to 5581 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
132.6 bits(283) | 0.0 | 79/292(27%) | 0/292(0%) | Minus/Minus |
Query 42 LRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK*KLPIWLCAPQFGSFDLRL*KF*TFPHGHEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKEVGLTGKQVPYHIFPAFCC*KVIERFPSKMRQKAFHPQTGDVH*IKIVAKTR*SCQPPAIICVKGIM*YKNPSMLEV 917 L H+N* + PIP R+ M+F T A FL K SF H++ I+ + + E ++ + W +P F +F+ L + F + H + + A M + +F F+CV L A +F+ +LL +T + FL ++ +PP P + W++ F+P + F L + +L ++ P ITT L++ FIP N ++ET+ + L+GK++ Y I + ++++ F K R ++ + +AK R S P C + + YK+ S L++ Subject 4706 LGFHEN*CFVDWPIPARTP*MVFNGCSTLAEFLLFKIIDSF*HEIAIMLTAKRYIL*EGLQKEFAEWHSSP*FSTFNTWLGEREPFLNSH*ERDRVGALMPRINSFVPFSCVGDLFAWIFAMFVDKLLSHLMTNPKLSSFLCKYFMHPPCPNSLKRKNWNVRFEPIFLNYFFSHFLLLNVWLLTQKYSSFEPGITT*FRLAYLFIPANIHLETLNKFRLSGKEINYIIMASSL*KELVQGFTMKERHNIAPLNA*TINEVDFMAKPRESS*PSPFTC*RAFIRYKDCSFLKI 5581
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5238 to 5744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.2 bits(590) | 0.0 | 112/169(66%) | 0/169(0%) | Plus/Plus |
Query 423 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK 929 WFKTHIP+ +LE+ RA+WV K+ +E RE R G TT+QF D+H R ++L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VPLN+SH+ +M EAV FEEKK SKS ATIENHSGRSC DW +D ALIFMKSQ TK Subject 5238 WFKTHIPIMSLEAVRAQWVHKLISREDREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTK 5744
Range 2: 4830 to 5186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 64/119(54%) | 0/119(0%) | Plus/Plus |
Query 15 LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ 371 +T+GESTGLNF+ G IL++++S T DRRW TALSRFSH++ +N G+ ++ ++HF GKPL+ F T ++ + I DLLPG P GF VG +EGVRE KL GDPWLK +FLGQ Subject 4830 ITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNAITHFVGKPLHKFFTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ 5186
Range 3: 5390 to 5743 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.2 bits(267) | 0.0 | 66/118(56%) | 0/118(0%) | Minus/Minus |
Query 575 LVWC*DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLN 928 LV DF+K+ A S+ QS QDLPE*FSIVA L FFSS + TAS I F+ L F GT RKVSSRN P G A + A S G E FLTA+R V S+PLCLGY+ S S AL+N Subject 5390 LVQSWDFMKMSALSTGQSSQDLPE*FSIVAILFDNFFSSKA*TASCIIFSS*LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLGYIAS*RSAALVN 5743
Range 4: 4832 to 5032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 29/67(43%) | 0/67(0%) | Minus/Minus |
Query 17 VKK**SGFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKV 217 VK *SG P K LS + P+ + L ++AV+ RRS V S +I P KFNPVDSP V Subject 4832 VKNL*SGLPTKWVIALSQVTPMPLMK*MS*LNLERAVHQRRSLVRALSYVTKIAPFWKFNPVDSPYV 5032
Range 5: 5240 to 5365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 19/42(45%) | 0/42(0%) | Minus/Minus |
Query 425 SSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 550 SS NC VV P S S TH AL S+L+ G+ VLN Subject 5240 SSVNCSVVMSPMRNSLSSLEINL*TH*ALTASRLMIGMCVLN 5365
Range 6: 5120 to 5170 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 10/17(59%) | 0/17(0%) | Minus/Minus |
Query 305 MTFSQGSPHSFSSLTPS 355 + F+ GSP S +SLTPS Subject 5120 LVFNHGSPTSLASLTPS 5170
Range 7: 5085 to 5465 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 39/127(31%) | 0/127(0%) | Minus/Minus |
Query 270 HEKGH*IIAFMSWVYAFKSFTCVAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPG*FQVT*WDMGFKPFLI*AFRLKLLNFAILILAKEKHDL*PRITTQLLLSHPFIPPNANIETIKE 650 H+K I A M VY+F + + ++ LL + V I ELL +T + + + NP + WD+ +P L ++ NF + IL KE L*P IT S FI N +E+ E Subject 5085 HKKCCSISALMPGVYSFIALSRIS*LLTTILAVIISELLSCDVTNAKLPILSRNQFVNPLSSHSLKTHDWDVRLEPILGRLNLIRDFNFKVRILPKEDLGL*PWITH*FSFSDTFISTNLALESFNE 5465
Range 8: 5550 to 5744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 26/65(40%) | 0/65(0%) | Minus/Minus |
Query 735 FGVVLRLHKN*GNIQQPIPTRSTGMIFYCRCTFACFLFLKFSHSFKHQVCIVACIQWNL*KESVK 929 FG L LH++ I PI TR + +I C TF LFLK +SF H I+ IQ + ++ VK Subject 5550 FGAKLGLHEDECFIHWPIFTRPSRVILNCGHTF*QLLFLKGMNSFLHHFFIMTAIQRHSFQKGVK 5744
Range 9: 5411 to 5743 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 35/111(32%) | 0/111(0%) | Plus/Plus |
Query 596 I*KHIPKT*RQ*FSDLSHGREETSKIFKASSRSCQIEARKAIWEVST*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFYEVSTPHQ 928 +* +IP+ * *+ ++S+G E ++ R+C+ + ++ *H K ++E + K DA SC+ +*GKE +K N +S +L* L +G + +EV T HQ Subject 5411 L*SYIPQA*GH*YCNISYGS*EEIELLLPCCRACKTSKSQTFRQIPA*HLSEKSASE*QS**KNDAGSCSCL*GKEVVKKYGHN*ESLWKVL*RLASG*STHLHEVPTLHQ 5743
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 5239 to 5745 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.9 bits(550) | 0.0 | 105/169(62%) | 0/169(0%) | Plus/Plus |
Query 423 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNANLMLEAVREFEEKKASKSAATIENHSGRSCRDWLLDVALIFMKSQHHTK 929 WFKTHIP+ LE+ RA+WV ++ +E RE R G TT+QF D+H R ++L+NA ER+E+IYPRHKG + L AV+KRL FS P E AKLRRA+P+GKFLLDTFL ++PLN HN ++M EAV FEEKK SKS ATIENHSGRSC DW +D ALIFMKSQ TK Subject 5239 WFKTHIPIMGLEAVRAQWVDRILSREVREFRIGDITTEQFTDDHSKNRGQELTNAAERYEAIYPRHKGTEFALDLGAVKKRLSFSSPAAENAKLRRARPFGKFLLDTFLKRIPLNCRHNESMMSEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTK 5745
Range 2: 4831 to 5187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.8 bits(349) | 0.0 | 64/119(54%) | 0/119(0%) | Plus/Plus |
Query 15 LTFGESTGLNFKHGGILISHDSFHTDDRRWLTALSRFSHNLDLVNITGLRVESFLSHFAGKPLYHFLTAKSGENVIRDLLPGEPNFFNGFNVSVGRNEGVREEKLCGDPWLKVMLFLGQ 371 +T+GESTGLNF+ G IL++++S T DRRW TALSRFSH++ +N G+ ++ ++HF GKPL+ F T ++ + I DLLPG P GF VG +EGVRE KL GDPWLK +FLGQ Subject 4831 ITYGESTGLNFQKGAILVTYESALTSDRRWWTALSRFSHDIHFINGMGVTWDNAITHFVGKPLHKFFTKRACNDDIIDLLPGRPELIEGFQSQVGADEGVREAKLVGDPWLKTKIFLGQ 5187
Range 3: 5241 to 5729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 86/163(53%) | 0/163(0%) | Minus/Minus |
Query 425 DFIKIRATSSNQSLQDLPE*FSIVAALLLAFFSSNSRTASSIRFALWLAFSGTFERKVSSRNFPYGFARLNLAAST*GFENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 913 DF+KI+A S+ QS DLPE*FSIVA L +FFSS + TAS I +L L F G RKVS+RNFP G A LNLA S G E F TA R S+PLCLG + S S A +N L SS NC VV P L S S ++I TH AL SK + GIWVLN Subject 5241 DFMKIKALSTGQSSHDLPE*FSIVAMLFDSFFSSKA*TASLIIDSLCLQFKGILLRKVSNRNFPKGLALLNLAFSAAGEEKLNLFFTAPRSRANSVPLCLG*IAS*RSAAFVNSCPRFLL*SSVNCSVVMSPILNSLTSLDSILSTHCALTASKPIMGIWVLN 5729
Range 4: 4833 to 5015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.2 bits(88) | 0.0 | 27/61(44%) | 0/61(0%) | Minus/Minus |
Query 17 GFPAKCDRKLSTLKPVMFTRSRLWLKRDKAVNHRRSSV*KESCDIRIPPCLKFNPVDSPKV 199 GFP K LS + P+ F + L D+AV+ RRS V S RI P K PVDSP V Subject 4833 GFPTKWVIALSHVTPMPFMK*IS*LNLDRAVHQRRSLVRALS*VTRIAPF*KLRPVDSPYV 5015
Range 5: 5121 to 5171 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.3 bits(62) | 0.0 | 12/17(71%) | 0/17(0%) | Minus/Minus |
Query 305 MTFSQGSPHSFSSLTPS 355 + FS GSP SF+SLTPS Subject 5121 LVFSHGSPTSFASLTPS 5171
Range 6: 5472 to 5744 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.6 bits(104) | 0.0 | 28/91(31%) | 0/91(0%) | Plus/Plus |
Query 656 EETSKIFKASSRSCQIEARKAIWEVST*HFPFKGSTECKPQCKPDA*SCARI*GKESKQKCSDNRKSFR*IL*GLVAGCCPNFYEVSTPHQ 928 +E ++ SS CQIE + +W++ H P + E + D * C+ +*G+E+ +K NR+S R ++* L +F+EV H+ Subject 5472 KEKVELLFPSSGECQIEKSQTLWKIPVGHLPQENPFELQT**IYDE*GCSCL*GEEAIKKHGYNRESLREVM*RLAC**SFDFHEVPVVHK 5744
Nucleotide Sequence (675 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
377.3 | 824.9 | 54% | 8.034e-104 | 35% | NC_003462 | |
476.7 | 1470.1 | 44% | 9.4e-134 | 36% | NC_001948 | |
369.5 | 855.0 | 55% | 1.778e-101 | 39% | NC_009892 | |
368.1 | 691.0 | 49% | 4.609e-101 | 28% | NC_012038 | |
366.3 | 880.2 | 47% | 1.642e-100 | 37% | NC_014821 |
Alignments
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 5382 to 6041 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
377.3 bits(817) | 0.0 | 159/220(72%) | 0/220(0%) | Plus/Plus |
Query 3 GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLPN 662 G+ L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRAKP+GKFLLDTFL +VPLN+SH+ M EAV FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL RFAPYMRYIE K+ + L N YIHSGK +D+L WV F G+CTESDYEAFDASQDHFIL+FEL+VM+FLGLP+ Subject 5382 GQELTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRAKPFGKFLLDTFLKRVPLNSSHDEKMMQEAVHAFEEKKLSKSMATIENHSGRSCEDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVLCRFAPYMRYIESKVTEVLPKNLYIHSGKNIDDLAAWVTTSKFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPS 6041
Range 2: 5669 to 6037 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 70/123(57%) | 0/123(0%) | Minus/Minus |
Query 290 GNPKNRITCNSNDKMK*XXXXXXXXXXXSVQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE* 658 G PKN +T +S ++K*S EASNAS*SDSV P+ +T + SS PE*M +F ++ SMYL+*GA +T C*KQA+VCPALA LNLLSN VQ WDFMK+ A S+ QS DLPE* Subject 5669 GKPKNFMTSSSKARIK*SCEASNAS*SDSVHTPLNLLVVTQAARSSIFFPE*MYRFFGSTSVTLDSMYLM*GANLQRTEC*KQARVCPALALLNLLSNLVQSWDFMKMSALSTGQSSQDLPE* 6037
Range 3: 5426 to 5587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 29/54(54%) | 0/54(0%) | Minus/Minus |
Query 47 LAFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG 208 L F GT + VSSRN P G A SFA S G E F TAI+ V S+PLCLG Subject 5426 LLFRGTLFRKVSSRNLPKGLALRSFACSAAGEEKLNLFLTAIRNVAVSVPLCLG 5587
Range 4: 5532 to 6020 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.6 bits(235) | 0.0 | 67/163(41%) | 0/163(0%) | Minus/Minus |
Query 153 HYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF*QKCVKQKLSIR 641 H +LK QD++ILRGIKCLII A+ + + +P I +R+NV I + L L FNV H+ K+ +N MLKA +SL S P +VKF LG HE+ I PI T P+ +IL TF L K +N + H I+ +IQ + QK VKQ+ + R Subject 5532 HDFKLKSQDKMILRGIKCLIIRLGAHTIEFTCSHPSC*VINILSRMNV*IFWKHLCNLGFNVSHVGCKSAKN*MLKASKSLSSFGTPEPVVKFGAKLGLHEDECFIHWPIFTRPSRVILNCGHTF*QLLFLKGMNSFLHHFFIMTAIQRHSFQKGVKQEFAER 6020
Range 5: 5530 to 6015 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.5 bits(154) | 0.0 | 56/162(35%) | 0/162(0%) | Plus/Plus |
Query 151 SLMESFCLTHFCQKFH*MLATMSICSMRQFRSLKPKRLAKVLQL*RIIQAGHVGIGY*MSL*FS*NPNIVQNLTID*G*LRLGKLWPAFNMQFWFVLLLI*GTLKRSSCKL*NRIFTFTLVKVLMNLMNGLKRETLQAFAQNQIMRHLMPLRITSSCHLSCK 636 +L + CLT F ++ *+ M + F L+ + KV RI G V IG + S*+PN NLT G +L +L AFN+QF+ L * TL + +I+TF L ++LM G + A + IMRHLMP +I S LS K Subject 5530 NLSANSCLTPF*KECL*IAVMMKK*CRKLFMPLRKRSCQKVWPQLRITLEGLVKIGQWIKHSSS*SPNFAPNLTTGSGVPKLDRLLLAFNIQFFADLHPT*DTLNPRLQRCFQKIYTFILERILMT*QLG*LQVNSMVCAPSLIMRHLMPRKIILSWLLSLK 6015
Range 6: 5666 to 5890 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 27/75(36%) | 0/75(0%) | Plus/Plus |
Query 287 ESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW 511 ES +V+ LA+ + HE+PTL++I*Q ++ W + LLST S C+L+E+H* + + + +HS W Subject 5666 ESLWKVL*RLASG*STHLHEVPTLHQI*QQVQECQSWTDSCLLSTFSSLQICTLHEIH*IQGYRGASKKSIHSFW 5890
Rupestris stem pitting associated virus-1, complete genome
Range 1: 5333 to 5989 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
476.7 bits(1034) | 0.0 | 205/219(94%) | 0/219(0%) | Plus/Plus |
Query 3 GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP 659 GE LSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLD+FLSK+PL ASHN MF+EAVQEFEAKKASKSAATIENH+GRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWV+ R FTGICTESDYEAFDASQDHFIL+FELQ+M+FLGLP Subject 5333 GEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFHEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVRTRGFTGICTESDYEAFDASQDHFILAFELQIMKFLGLP 5989
Range 2: 5626 to 5901 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 70/92(76%) | 0/92(0%) | Minus/Minus |
Query 296 VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLP 571 VQ+PV LTHS SSSRP PE M*K GF+AC+SFFSMYLI*GAKRT+TAC KQA+VCPALATL+LLSN VQC DF+KI+ATS++QS HDLP Subject 5626 VQIPVNPLVLTHSFSSSRPFPEWM*KLGFRACISFFSMYLI*GAKRTRTACWKQARVCPALATLSLLSNLVQCCDFIKIRATSNNQSLHDLP 5901
Range 3: 5371 to 5538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.1 bits(199) | 0.0 | 39/56(70%) | 0/56(0%) | Minus/Minus |
Query 41 LAFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M 208 LAFNG D+ S++NFP G ARLS AAST GFEN +RFRTA++KV+ES PLCLG*M Subject 5371 LAFNGILDRKESNKNFPYGLARLSLAASTWGFENLRRFRTAMRKVIESFPLCLG*M 5538
Range 4: 5941 to 5988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.7 bits(65) | 0.0 | 12/16(75%) | 0/16(0%) | Minus/Minus |
Query 611 GNPKNRITCNSNDKMK 658 GNPKN I CNSN +MK Subject 5941 GNPKNFIICNSNARMK 5988
Range 5: 5519 to 5983 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.2 bits(352) | 0.0 | 76/155(49%) | 0/155(0%) | Minus/Minus |
Query 189 P*KPHYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF 653 P K HYLQ + DEV+L IK ++*FCAN+ + S +P ++ + TF ++V++R SLH L NV HI K NQN ML+A + LPS SY +VKF T+L H+N S+I**PIP *P MILYSC T SL KLL ++H I+ QW+F Subject 5519 PQKFHYLQFEC*DEVVLGSIKGFVV*FCANSSESSSSDPLVQLVXTFP*MDVEVRLQSLH*LFLNVSHIGCKANQNSMLEASKGLPSFSYSKPVVKFSTVL*LHKNQSNI**PIPA*PTCMILYSCCTLTSLLRLKLLYRFMKHDGIMTGFQWDF 5983
Range 6: 5331 to 5447 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 19/39(49%) | 0/39(0%) | Minus/Minus |
Query 1 ALKTLNASGQPLKK*WNHYPYV*GKCFQIFHKHCLITHQ 117 A K +A GQP + NH+ Y GKCFQ H HC + HQ Subject 5331 ASKI*DAFGQP*GRLLNHFLYALGKCFQTSHMHCSVAHQ 5447
Range 7: 5520 to 5984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
131.7 bits(281) | 0.0 | 75/155(48%) | 0/155(0%) | Plus/Plus |
Query 190 KFH*MLATMSICSMRQFRSLKPKRLAKVLQL*RIIQAGHVGIGY*MSL*FS*NPNIVQNLTID*G*LRLGKLWPAFNMQFWFVLLLI*GTLKRSSCKL*NRIFTFTLVKVLMNLMNGLKRETLQAFAQNQIMRHLMPLRITSSCHLSCK*CGF*G 654 K H* + C M+++RSL+ +RL +V QL*RI+Q GH GIGY*M L*F *+ N V NLT *L+LGK A NM FWF L I* TL++S CKL*+ T KV + +G + E FAQNQ + LM + TSS H +C+* F G Subject 5520 KSH*KPVIIPSCFMKRYRSLRRRRLVRVQQL*RIMQVGHAGIGY*MLL*FL*SHNTVLNLTTGLE*LKLGKPLLASNMLFWFALHPI*DTLRKS*CKL*SLTSTSIQGKVXTS*TSGSELEDSLEFAQNQTTKPLMLPKTTSS*HSNCR**NFWG 5984
Range 8: 5332 to 5532 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 24/67(36%) | 0/67(0%) | Plus/Plus |
Query 2 W*VIKQCL*KI*KHLP*T*G**FHHFFNGCPEAFKVFKATSGGCEAKACKALWKVSA*HIFVKSSIE 202 W* +QC+*++*KHLP * *F++ +GCP+A ++F+A C+ +A + +W++ +++ IE Subject 5332 W*ATEQCM*EV*KHLPKA*RK*FNNLPHGCPKASQIFEAPG*SCQTEAGQTIWEILIRFFPIQNPIE 5532
Range 9: 5602 to 5850 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 45/83(54%) | 0/83(0%) | Plus/Plus |
Query 272 CCNYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW*RS 520 C NYRES R VM GL RC +F+E+ TLY I*Q S* WAN LL TC GS C+LYE+H*++A+AS + LH RS Subject 5602 CSNYRESCR*VMQGLVIRCCSDFYEVTTLY*I*QQA*SS*SWANPCLLPTCCSGSLCTLYEIH*EKANASSEA*LLHPFRERS 5850
Range 10: 5331 to 5474 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 25/48(52%) | 0/48(0%) | Plus/Plus |
Query 1 LVSY*AMLVKDLKAFTLDIRVMIPSLF*WLSGSV*SFQSHKWRLRS*G 144 LVS *AM V+ LKAFT I+ MI WLS SV +F+S + +L +*G Subject 5331 LVSN*AMHVRGLKAFTQGIKEMIQ*PSSWLSESVSNFRSPRLKLPN*G 5474
Range 11: 5881 to 5985 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 15/35(43%) | 0/35(0%) | Plus/Plus |
Query 551 KLYRHLHRIRL*GI*CLSGSLHLVI*VASNAVFRV 655 +++ +LHRIRL +*C LH I +A N +F V Subject 5881 RIHWNLHRIRLRSL*CFPRPLHPSIRIADNEIFGV 5985
Range 12: 5553 to 5957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 62/135(46%) | 0/135(0%) | Minus/Minus |
Query 223 QMTR*SDPERHQMPHNLILCKCL*SFAL*PIH*VHQDLYQSECKNSVLKLA*ASFQCTSYKEQNEPKLHVESRPKFAQP*LPLIYCQILYNVGIS*KLKRHLVANPDMTCLNDSL*LQHFC*PFWLQTPELPH*T 627 +M *S +HQ +LILCK * *P DL + C++ +LA A QC SY+ Q+EP+ HV S+ FAQ *L CQI Y+V S*K ++HL+ NP MT L+DSL*L H *P QTP H T Subject 5553 RMLG*SGLGKHQRLRSLILCKFQ*IL*F*PTRSARXDLSLNGCRS*ASELALAFSQCISYRVQSEPEQHVGSKQGFAQL*LL*ACCQI*YSVVTS*KSEQHLITNPCMTYLHDSL*LLHSY*PSSPQTPVPLHET 5957
Range 1: 5231 to 5887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
369.5 bits(800) | 0.0 | 155/219(71%) | 0/219(0%) | Plus/Plus |
Query 3 GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP 659 G+ ++NA ER+E+IYPRHKG DS+TFLMAV+KRL FS+P +E+AKLRRA P+GKFLL TFL +PL H+ ++ ++AV +FE KK SKSAATIENHSGRS RDW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL RFAPYMRYIE KL AL FYIHSGK +D+L WVK +NF+G CTESDYEAFDASQDHFIL+FE+++MR LGLP Subject 5231 GKQITNAAERYETIYPRHKGTDSVTFLMAVKKRLSFSQPSIESAKLRRAMPFGKFLLQTFLKYIPLCGKHDSDLMSKAVNDFEEKKLSKSAATIENHSGRSSRDWPVDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVLCRFAPYMRYIEAKLFNALPDRFYIHSGKNIDDLGNWVKKQNFSGECTESDYEAFDASQDHFILAFEIEIMRHLGLP 5887
Range 2: 5438 to 5872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.0 bits(225) | 0.0 | 57/145(39%) | 0/145(0%) | Minus/Minus |
Query 210 PHYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIV 644 PH K +DEVILR IK LI+*F K+ NP + I T ++V+ + + +L N+PH+ K Q+ +LK Q LPSL IVK LGFHEN* + PIP *M+ CST A FK+++ I I+ Subject 5438 PHNFYFKCKDEVILRSIKGLIV*FSTLT*KILLLNPVPEVINILT*MDVESVWECIEKLGLNIPHVGGKPTQDRVLKTSQGLPSLCTSKPIVKLSAELGFHEN*CFVDWPIPARTP*MVFNGCSTLAEFLLFKIIDSF*HEIAIM 5872
Range 3: 5269 to 5424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 25/52(48%) | 0/52(0%) | Minus/Minus |
Query 41 GTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M 196 G + + V RN P G A L+ A S G+E F TAI+ V ES+PLCLG*+ Subject 5269 GIYFRKVCKRNLPNGIALLNLALSILGWEKESLFLTAIRNVTESVPLCLG*I 5424
Range 4: 5521 to 5799 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.6 bits(211) | 0.0 | 52/93(56%) | 0/93(0%) | Minus/Minus |
Query 293 VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE 571 V P KF LT SS LPE M* A S S+YL+*GA KT C*KQAKVCPA A N LSN VQ WDFMKI A S+ QS + PE Subject 5521 VHSPEKFCFLTQFPRSSIFLPEWM*NLSGSALKSLASIYLM*GANLHKTEC*KQAKVCPAFALRNRLSNLVQSWDFMKISALSTGQSLLERPE 5799
Range 5: 5246 to 5320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 10/25(40%) | 0/25(0%) | Minus/Minus |
Query 18 DSH*KSDGIITLMSRVNAFKSFTSI 92 +SH*+ D + LM R+N+F F+ + Subject 5246 NSH*ERDRVGALMPRINSFVPFSCV 5320
Range 6: 5500 to 5856 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.5 bits(213) | 0.0 | 55/119(46%) | 0/119(0%) | Plus/Plus |
Query 272 CCNYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW*RS**T**MG*SAKLYRHLHRIRL*GI*CLSGSLHLVI* 628 CCN+ + FR GLA+R NFHEIPTL+ +*Q + GWAN GL S C L+EV+* +A + LH * ** +G* AK +R ++ IRL*G+*C S SLH I* Subject 5500 CCNH*KPFRAF*QGLASRQSTNFHEIPTLH*V*QSVSKCKGWANLGLFSALCLV*VCPLHEVY*GQAFQCTPRQILHPFR*EY**PRELG*EAKFFR*VY*IRL*GL*CFSRSLHPCI* 5856
Range 7: 5724 to 5855 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 21/44(48%) | 0/44(0%) | Minus/Minus |
Query 496 QMTR*SDPERHQMPHNLILCKCL*SFAL*PIH*VHQDLYQSECK 627 QM *SD E+HQ PH+LI L +FA *P HQ Y + C+ Subject 5724 QMQG*SDLEKHQRPHSLIQYTHLKNFAS*PSSRGHQYSYLNGCR 5855
Range 1: 4712 to 5368 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
368.1 bits(797) | 0.0 | 156/219(71%) | 0/219(0%) | Plus/Plus |
Query 3 GELLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP 659 G++L+NA ERFE+IYPRHK +D++TFLMAV+KRL+FSKP VE AKL A+ YGK+LLD FL VPL A HN +V++FE KK SKSAATIENHSGRSCRDWL DV LIFMKSQ CTKFDNR RVAKA Q++ CFQH+VL RFAPYMRYIE KL +AL NFYIHSGKGL+ELN+WV NF GICTESDYEAFDASQD I++FEL M +LGLP Subject 4712 GKILTNAAERFEAIYPRHKNSDTVTFLMAVKKRLRFSKPMVECAKLNEARGYGKYLLDNFLKFVPLKAQHNPEFMARSVRDFEEKKTSKSAATIENHSGRSCRDWLADVGLIFMKSQICTKFDNRFRVAKAAQSIVCFQHSVLCRFAPYMRYIEMKLQEALPKNFYIHSGKGLEELNKWVLGGNFRGICTESDYEAFDASQDQHIVAFELACMEYLGLP 5368
Range 2: 5002 to 5280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 53/93(57%) | 0/93(0%) | Minus/Minus |
Query 293 VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE 571 VQ+P K TH +SS+PLP *+*KF +A SF SMYLI GA R T C KQ C ALAT NLLSN VQ WDF+ I TS+SQS + PE Subject 5002 VQIPRKLPPSTHLFNSSKPLPL*I*KFFGRASCSFISMYLIYGANRHSTECWKQTIDCAALATRNLLSNLVQIWDFINISPTSASQSLQERPE 5280
Range 3: 4750 to 4914 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 36/55(65%) | 0/55(0%) | Minus/Minus |
Query 41 AFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M 205 AFNGT K +SSR FP* A S A ST G EN KRF TAI+KV SL LCLG*M Subject 4750 AFNGTNFKKLSSRYFP*PLASFSLAHSTIGLENLKRFFTAIRKVTVSLFLCLG*M 4914
Range 4: 4865 to 5170 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 36/102(35%) | 0/102(0%) | Minus/Minus |
Query 156 NVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF*QKCVKQKLSI 461 +VPHI ++ Q ML+A L S + S+V+F LG H+ I *PIPT + M+ Y C T L F++ + IV Q + Q+ VK LS+ Subject 4865 DVPHIWGESTQY*MLEANYRLRSFGHTESVVEFGANLGLHKYKPHIC*PIPTRASRMVFYCCCTLTCLLFFEISHTPGHEFRIVLGFQRHKFQEIVK*ILSV 5170
Range 5: 5201 to 5350 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 14/50(28%) | 0/50(0%) | Minus/Minus |
Query 492 HYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKI 641 H QLK ++L IK I+ F AN +++ +PF++ + +N+++ Subject 5201 HASQLKSHYVLVLACIKSFIVRFGANTPEITTKHPFVQLFQALAAMNIEV 5350
Range 6: 4981 to 5214 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 29/78(37%) | 0/78(0%) | Plus/Plus |
Query 272 CCNYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHS 505 C N R+ F ++ GLA+RC +E+P L++I Q I A LL S S +YEVH E S E L+S Subject 4981 CSNNRKPFWTLL*GLASRCGAYIYEVPDLHQIRQQIPCGQSCAIDSLLPAFSTVSIRPIYEVHRDETTGSPAEELLYS 5214
Range 1: 5395 to 6042 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
366.3 bits(793) | 0.0 | 153/216(71%) | 0/216(0%) | Plus/Plus |
Query 12 LSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVPLNASHNVNMFNEAVQEFEXXXXXXXXXTIENHSGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQHAVLVRFAPYMRYIEKKLMQALKPNFYIHSGKGLDELNEWVKARNFTGICTESDYEAFDASQDHFILSFELQVMRFLGLP 659 L+NA ER+E+IYPRHKG D+ TFLMAV+KRL FS P E AKLRRA+P+GKFLLDTFL +VPL+ H+ M AV FE KK SKS ATIENHSGRSC DW +D ALIFMKSQ CTKFDNR R AKAGQTLACFQH+VL RFAPYMRYIE K++++L N YIHSGK +D+L WV+ F G+CTESDYEAFDASQDHFIL+FEL+VM++LGLP Subject 5395 LTNAAERYEAIYPRHKGTDTATFLMAVKKRLSFSSPAAEHAKLRRARPFGKFLLDTFLKRVPLDRKHSSEMMEFAVHAFEEKKLSKSMATIENHSGRSCEDWPIDKALIFMKSQLCTKFDNRFRSAKAGQTLACFQHSVLCRFAPYMRYIEAKVVESLPKNLYIHSGKNIDDLASWVRIHKFNGVCTESDYEAFDASQDHFILAFELEVMKYLGLP 6042
Range 2: 5676 to 5954 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 53/93(57%) | 0/93(0%) | Minus/Minus |
Query 293 VQMPVKFRALTHSLSSSRPLPE*M*KFGFKACMSFFSMYLI*GAKRTKTAC*KQAKVCPALATLNLLSNFVQCWDFMKIKATSSSQSRHDLPE 571 V P+ LT SS PE*M*+F +F SMYLI*GA KT C*KQAKVCPALA NLLSNFV DFM IKA S QS + PE Subject 5676 VHTPLNL*ILTQDARSSIFFPE*M*RFFGSDSTTFASMYLI*GANLHKTEC*KQAKVCPALALRNLLSNFVHN*DFMNIKALSIGQSSQERPE 5954
Range 3: 5424 to 5591 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 31/56(55%) | 0/56(0%) | Minus/Minus |
Query 41 LAFNGTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*M 208 L GT K VS RNFP G A L+ A S G E F TAIK V S+PLCLG*M Subject 5424 LRSKGTLFKKVSRRNFPKGRALLNLACSAAGEEKLNLFFTAIKNVAVSVPLCLG*M 5591
Range 4: 5661 to 6029 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 45/123(37%) | 0/123(0%) | Plus/Plus |
Query 278 NYRESFRQVMSGLATRCRFNFHEIPTLYKI*Q*IKGS*GWANFGLLSTCSFGSFCSLYEVH*KEAHASFKTEFLHSLW*RS**T**MG*SAKLYRHLHRIRL*GI*CLSGSLHLVI*VASNAV 646 +Y E F + GLA R F+ HE+ +++I*Q I G NF LLST C LYE+H ++ + LHSLW **+ +G ++++ ++RI L G *C++G LH +*+ S+ + Subject 5661 HY*EPFWSFL*GLANR*SFDIHEVSIVHEI*QQIPKCQGRTNFSLLSTFCLVQICPLYEIHRSKSGGVTPKKSLHSLWEEY**SGILGQNSQIQWCVYRI*LRGF*CITGPLHSGL*IGSHEI 6029
Range 5: 5409 to 5576 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 24/56(43%) | 0/56(0%) | Plus/Plus |
Query 26 *KI*KHLP*T*G**FHHFFNGCPEAFKVFKATSGGCEAKACKALWKVSA*HIFVKS 193 *K+* HLP T*G *+ H NGC E K+ ++ C+ + LWK+S *++F +S Subject 5409 *KV*SHLPKT*GN*YRHVLNGCKEKVKLLLSSC*TCQIEEGSPLWKISP*YLFEES 5576
Range 6: 5542 to 6042 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 65/167(39%) | 0/167(0%) | Minus/Minus |
Query 159 WQP*KPHYLQLK*QDEVILRGIKCLII*FCANACKVSRFNPFIKFIKTFTRVNVKIRF*SLHELLFNVPHIRSKTNQNCMLKAGQSLPSLSYP*SIVKFCTMLGFHEN*SDI**PIPT*PA*MILYSCSTFASLFGFKLLNCLIEHIDIVASIQWNF*QKCVKQKLS 659 WQ H Q K Q+EV+L IK L++ FC + + +P + I RVNV+I + LH F V HIR K+ Q+ MLKA SL L S+VKF L HE S I PI T M+L S T F FK +N H + +IQ + QK +K+K S Subject 5542 WQTKIFHDFQFKGQNEVVL*CIKSLVVRFCTHTIEFVNSDPGCQIINILPRVNVEIFWE*LHHFCFYVSHIRGKSAQDRMLKAS*SLSGLGTSESVVKFRAQLRLHEYQSFIDWPILTGTTRMVLNSGHTL*EFFLFKGMNSKFHHFTAMLAIQRDSLQKGIKEKFS 6042
Range 7: 5401 to 5472 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 12/24(50%) | 0/24(0%) | Minus/Minus |
Query 18 SH*KSDGIITLMSRVNAFKSFTSI 89 SH*+ GI +LMS VN F F+ + Subject 5401 SH*ERGGISSLMSWVNGFIPFSCV 5472
Range 8: 5621 to 6019 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 50/133(38%) | 0/133(0%) | Plus/Plus |
Query 238 FRSLKPKRLAKVLQL*RIIQAGHVGIGY*MSL*FS*NPNIVQNLTID*G*LRLGKLWPAFNMQFWFVLLLI*GTLKRSSCKL*NRIFTFTLVKVLMNLMNGLKRETLQAFAQNQIMRHLMPLRITSSCHLSCK 636 F LK K +V L R I V IG + L*+S*+ N +NLT D R KL AFN+ L LI* T K+ +I TFTL ++LM G + QN R LM R TS L+ K Subject 5621 FMPLKRKNSQRVWPLLRTILVVPVRIGQSIKL*YS*SLNCARNLTTDSEVPRPDKL*LAFNILSCADLPLI*DT*KQKWWSHSQKISTFTLGRILMIWHPGSEFTNSMVCVQNLTTRLLMHHRTTSFWPLNWK 6019
Nucleotide Sequence (658 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
517.9 | 2208.1 | 31% | 3.519e-146 | 67% | NC_001948 | |
212.3 | 279.5 | 18% | 3.537e-54 | 44% | NC_029087 | |
159.6 | 315.9 | 37% | 1.619e-55 | 38% | NC_014821 | |
156.9 | 326.4 | 43% | 2.019e-54 | 36% | NC_009892 | |
154.1 | 308.1 | 37% | 4.725e-53 | 46% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 4028 to 4684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
517.9 bits(1124) | 0.0 | 214/219(98%) | 0/219(0%) | Minus/Plus |
Query 2 TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFL 658 TGVISDEKFSDAKPWLSGIST DIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDD CKVAKAG+SKKEGWDVVTFEVFLRKV+GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFL Subject 4028 TGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDFL 4684
Range 2: 4030 to 4683 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
430.0 bits(932) | 0.0 | 200/218(92%) | 0/218(0%) | Plus/Minus |
Query 3 RKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHKSIYPGGNN*TSSKITQ*PAFKPETFLRKTSKVTTSHPSFFDLPALATLQPSSISRSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISAVDIPESQGFASLNFSSLMTP 656 RKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFT LLSMLYLYV PSSSLSMSLCSAPKIARSFCESYVL HGSPASEMKASLR+ SKH+S+YPGGNN TSSKITQ PAF P TFLRKTSKVTTSHPSFFDLPALATLQ SSISRSFLIEFAKARLGETKVTN PSDLFMKLLYKKLFPAPNVPSTTV+SLG IS VDIPESQGFASLNFSSL+TP Subject 4030 RKSCILWKIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITP 4683
Range 3: 4028 to 4684 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
341.5 bits(739) | 0.0 | 153/219(70%) | 0/219(0%) | Plus/Minus |
Query 2 EEVMHIVEDCIISKGCSH*TFFEVTW*SRFKHWVHKTSAFYVVPICLSFKQSEYVTLLSSQNCSXXXXXXXXXXWITSK*NESITAYDK*TQIDISRGKQLNLIENHTMTSLQTRNFSKENFKGHYIPPFLL*FACFGNFAAIIHFKIIFD*ICQGSSRGNKSYKFSLRSLHETLIQETLSSPKCAKHDS*LSWLYIRS*YTRKPGFCITELFITYDTS 658 E+VMHI+EDCIIS+ SH FEVTW S F+HWVHK AFYV+PI + KQS+YVTLLS+QNC ILL +ICAL WITSK*NESIT Y+K ID+SR KQL+LI+NHT+ SLQ+ NFSKEN K +YIPPFLL* CF NFAAIIHFKIIFD*IC +S NK Y+F+LR HETL+QETL SPKC KHDS WL I S YTRKP FCITEL ITY+ S Subject 4028 EKVMHIMEDCIISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIPPFLL*PTCFSNFAAIIHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS 4684
Range 4: 4030 to 4680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
322.7 bits(698) | 0.0 | 147/217(68%) | 0/217(0%) | Minus/Plus |
Query 6 WCHK**KVQ*CKTLAFWYINCGYKAKRANCRAWHIWGWKEFLV*EFHEEI*GKICNFCFP*TSLGKFNQK*S*NG*WLQSCQSRQIKEGRVGCSDL*SFP*KSFWFEGWSLCDFR*GSVVSPWIYRFVFTCHTQ*CFHFTCW*SMPEHI*FTEGSSNFGS*AE*HTQTA*RKDI*VQHRKQTFCEPNV*I*TTMSLQKRFNDCSLC*LCNLPQYA*L 656 W +K**+VQ*CKTLAFWYI Y AK +CRAW+IWGW+EFLV EFHE++*G I N CF T KFNQK*S*NG* LQSC SR +KEGRVGCS+ * FP*KS EGW LCDF *G VVS WI+R + +T *CFHFTCW*SM +HI* +GS NFG *AE*HT TA* +++*V HRKQ CEPNV I T MSLQK +DC *LCNLP YA*L Subject 4030 WRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK*S*NG**LQSC*SR*VKEGRVGCSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*LCNLP*YA*L 4680
Range 5: 4029 to 4685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
300.3 bits(649) | 0.0 | 151/219(69%) | 0/219(0%) | Minus/Plus |
Query 1 LVS*VMKSSVMQNPGFLVYQLRI*SQES*LSCLAHLGLERVSCIRVS*RDLRENL*LLFPLDEPWQIQSKMILKWMMAAKLPKQANQRRKGGM**PLKFSLEKFLV*RLVIV*FSMRFSCFPLDISICVYLSYAVMLSFHLLVIHARAHMIHRRIEQFWELSRVTYSDCLKERHIGTT*KADVL*TQCLNLDYHVTSKKVQ*LQPLLIMQSSTICMTSS 657 L *VM+SSVMQN GFLVY L I SQ +*LSCL HLGL RVSC RVS*+ LR N * LF D QIQSKMILKWM+AAKL KQ QRRKGGM** L+FSLEK *RL V*F MR SCF LD SI L Y VMLSFHLLVIH +AHM +RI QFW LSRVTY DCL+ + IG T*KA L*TQC N D HVTSK+ +*L LIMQSS ICMT S Subject 4029 LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVNS*PLFLPDVL*QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIYACLLYVVMLSFHLLVIHVKAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLIMQSSIICMTFS 4685
Range 6: 4065 to 4685 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
295.7 bits(639) | 0.0 | 139/207(67%) | 0/207(0%) | Plus/Minus |
Query 1 GGSHAYCGRLHNQQRLQSLNLF*SDMVV*IQTLGSQNVCFLCCTYMSFLQAV*VCHSAQLPKLLDPSVNHMCSGMDHQQVK*KHHCV*QVNTNRYIQGETTEPHRKSHNDQPSNQKLF*GKLQRSLHPTLPSLICLLWQLCSHHPFQDHF*LNLPRLV*GKQKLQIFPQISS*NSYTRNSFQPQMCQARQLALLALYPQLIYQKARV 621 G SHAY GRLHNQ++ QS + F*SDM V I+TLGSQ CFLC TY QAV*VCHSAQ PKL DP +HMC MDHQQVK*KHH V* + +R IQ ETT PH+KSH+ QPS +LF*GK Q+ LHPTLPSL LL QLCS+HPFQDHF*LNL + V KQ+L+I+PQ S*NS TRNS QPQM QARQ LA Y IYQKA+V Subject 4065 GESHAYYGRLHNQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GKPQKLLHPTLPSLTYLL*QLCSYHPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKV 4685
Elderberry carlavirus C isolate EBCVC, complete genome
Range 1: 3568 to 4152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 91/195(47%) | 0/195(0%) | Minus/Plus |
Query 74 TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPC 658 TG IS ++D + + R L V+LGTFGAGKS L+K FM ++G+ +T+VSPRR LA +D+++D + K++ + W V TFE FL + ++ G VI DEVQL+PPGY+DL L ++ I L GDPCQS YDS+KDR E SDI ++LE K Y YNI SRRFVN +E RLPC Subject 3568 TGAISSGLYNDKSDLSELVVGSSQAARALNVILGTFGAGKSTLFKKFMHANKGRCITYVSPRRGLAEEFASDMQLDRMRRGKGKSKAECQNWQVCTFEKFLERAMKIRTGSAVIIDEVQLYPPGYLDLVLHLLHEGVHIFLLGDPCQSDYDSEKDRHSFAFELSDICKILENKEYNYNILSRRFVNRNYEKRLPC 4152
Range 1: 4363 to 4737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 60/125(48%) | 0/125(0%) | Minus/Plus |
Query 5 VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 379 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YDS DR I +SDI+R+L G+TY++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTLWESIQEF 4737
Range 2: 4084 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 35/73(48%) | 0/73(0%) | Minus/Plus |
Query 440 TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL 658 TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI NDL Subject 4084 TGVLCQGIKETQKNLSSMLVPEAVHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 3: 4146 to 4301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 20/52(38%) | 0/52(0%) | Plus/Minus |
Query 441 RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA 596 +S L++ A+ LGETKV FP D M L ++L P P VP + L + ++ Subject 4146 KSLLMDSARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFLSWTAS 4301
Range 1: 4208 to 4582 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 63/125(50%) | 0/125(0%) | Minus/Plus |
Query 5 VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 379 V+TFE+FL ++ +K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQS YDS+ DR + SDI+ +L GK+YRYNI S+RF NP+F SRLPC +T +Y ++ ++ F Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTLWDSITQF 4582
Range 2: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 33/68(49%) | 0/68(0%) | Minus/Plus |
Query 392 ADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKK 595 A+I R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 3: 4207 to 4509 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 36/101(36%) | 0/101(0%) | Plus/Minus |
Query 78 GSLDSNIGFTKRLLSMLYLYVFPXXXXXXXXXXAPKIARSFCESYVLWHGSPASEMKASLRMTSKHKSIYPGGNN*TSSKITQ*PAFKPETFLRKTSKVTT 380 G+ + GF LS+LY + P MS K RS S LW GSPA S + ++ +S PGG +* SS IT P +R +SKV+T Subject 4207 GNREEKTGFLNL*LSILYR*LLPFKMWMMSESELAKR*RSSLLS*SLWQGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST 4509
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 4359 to 4733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.1 bits(330) | 0.0 | 58/125(46%) | 0/125(0%) | Minus/Plus |
Query 5 VVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAIFHNMHDF 379 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G++Y++NI S+RF NP+F RLPC+ K +T +Y ++ ++ +F Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTLWDSIQEF 4733
Range 2: 4080 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 34/73(47%) | 0/73(0%) | Minus/Plus |
Query 440 TGVISDEKFSDAKPWLSGISTADIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDL 658 TGV+ K S + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI +DL Subject 4080 TGVLCQGIKEAQKDLASKLIPELVHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 3: 4142 to 4297 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 24/52(46%) | 0/52(0%) | Plus/Minus |
Query 441 RSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNVPSTTVSSLGFISA 596 +S L++ A LGETKV FP D M L K+LFP PNVP +S L + ++ Subject 4142 KS*LMDSASDLLGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFLSWTNS 4297
Nucleotide Sequence (367 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
278.3 | 1183.1 | 29% | 2.126e-74 | 71% | NC_001948 | |
59.7 | 59.7 | 22% | 1.325e-08 | 29% | NC_018714 | |
59.7 | 59.7 | 22% | 1.325e-08 | 28% | NC_009892 | |
60.2 | 60.2 | 16% | 9.647e-09 | 41% | NC_028975 | |
60.6 | 60.6 | 15% | 7.022e-09 | 45% | NC_025388 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 1193 to 1558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.3 bits(601) | 0.0 | 115/122(94%) | 0/122(0%) | Minus/Plus |
Query 2 GSLLMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDFFEHLFLFSCLSELIEENVEVVMDNSWFGLGDPQFNRQRAPFFLGSSYWLNSKFSVEHKFSGAI 367 GSLLMPNISKLVISFFCRMMPNALARLSS+FRECSLDSFVYSLEPFNFSVNLVDIT DFFEHLFLFSCL+ELIEE+VE VMDNSWFGLGD QFNRQRAPFFLGSSYWLNSKFSVEHKFSG I Subject 1193 GSLLMPNISKLVISFFCRMMPNALARLSSSFRECSLDSFVYSLEPFNFSVNLVDITPDFFEHLFLFSCLNELIEEDVEEVMDNSWFGLGDLQFNRQRAPFFLGSSYWLNSKFSVEHKFSGTI 1558
Range 2: 1195 to 1557 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.1 bits(474) | 0.0 | 109/121(90%) | 0/121(0%) | Plus/Minus |
Query 3 MAPENLCSTENLELSQYEDPRKNGAL*RLNCGSPSPNQELSMTTSTFSSINSLRQEKRNKCSKKSEVISTKLTEKLNGXXXXXXXXXXXXRKFEESLARAFGIIRQKNDMTNLEMLGISRE 365 M PENLCSTENLELSQYEDPRKNGAL RLNC SPSPNQELSMT+ST SSINS RQEKRNKCSKKS VISTKLTEKL GSSE TNESSEHSRK EESLA AFGIIRQKNDMTNLEMLGIS+E Subject 1195 MVPENLCSTENLELSQYEDPRKNGALWRLNCKSPSPNQELSMTSSTSSSINSFRQEKRNKCSKKSGVISTKLTEKLKGSSEYTNESSEHSRKLEESLASAFGIIRQKNDMTNLEMLGISKE 1557
Range 3: 1193 to 1558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.3 bits(409) | 0.0 | 88/122(72%) | 0/122(0%) | Plus/Minus |
Query 2 NGT*KLMLN*EFGVKPI*GPKEEWGPLTIELRIPKSKPRIIHDHLNVLLYQLAEAGEKK*MLKEIRSYIY*VNRKVKWLK*VNK*I**TLPKI*RKPGKSIWHHSAEE*YDQLRNVRHKQRA 367 +G *KL+LN*+FGV+PI* PK+E GPL IEL +PKSKPRI+HD NVLL QL AGE+K*MLKEIRSYI+*+N K+K LK*V+K*I* TL K R+PG+ IWHH A+E*YDQLRNV HKQRA Subject 1193 DGA*KLVLN*KFGVEPI*RPKKERGPLAIEL*VPKSKPRIVHDLFNVLLDQLI*AGEEK*MLKEIRSYIH*INGKIKGLK*VHK*I*RTLSKARREPGECIWHHPAKE*YDQLRNVGHKQRA 1558
Range 4: 1194 to 1556 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 87/121(72%) | 0/121(0%) | Plus/Minus |
Query 4 WHLKTYAQLRIWS*ANMRTQGRMGPSDD*IADPQVQTKNYP*PPQRSPLSTR*GRRKEINAQRNQKLYLLS*PKS*MAQVSKQMNLVNTPENLKKAWQEHLASFGRRMI*PT*KC*A*AES 366 W LKT AQL+IWS*ANM+TQ R GPS D*I PQVQTKN P*P QR P ST GRR+EINAQRNQ+LY L+* K+* AQVS QMNL NT E+ K+AW+ HLAS G+RMI*PT*KC A*A+S Subject 1194 WCLKTCAQLKIWS*ANMKTQERTGPSGD*IVSPQVQTKNCP*PLQRPPRSTHLGRRREINAQRNQELYPLN*RKN*RAQVSTQMNLANTLES*KRAWRVHLASSGKRMI*PT*KCWA*AKS 1556
Range 5: 1194 to 1556 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 88/121(73%) | 0/121(0%) | Minus/Plus |
Query 4 ALCLCLTFLSWSYHSSAE*CQMLLPGFLQIFGSVH*IHLFTHLSHLTFRLT*XXXXXXXXXIYFFSPASAS**RRTLRWSWIILGLDLGIRNSIVRGPHSSLGPHIGLTPNSQLSISFQVP 366 ALCLC TFLSWSYHS A *CQM PG L F SV *IHL THLS L F L * I*LLISLSIYF SPA S* RRTL+ SW ILGLDLG NSI RGP S LG HIG TPN QLS SFQ P Subject 1194 ALCLCPTFLSWSYHSFAG*CQMHSPGSLLAFESVR*IHLCTHLSPLIFPLI*WI*LLISLSIYFSSPA*MS*SRRTLKRSWTILGLDLGTYNSIARGPRSFLGLHIGSTPNFQLSTSFQAP 1556
Range 6: 1195 to 1359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 39/55(71%) | 0/55(0%) | Minus/Plus |
Query 201 LSAYA*HF*VGHIILLPNDAKCSCQAFFKFSGVFTRFICLLT*AI*LFG*LSRYN 365 L AYA HF*VGHIILLP+DAKC+ QA F S VF RFIC+LT*A+* F * S YN Subject 1195 LFAYAQHF*VGHIILLPDDAKCTRQALF*LSRVFARFICVLT*AL*FFR*FSGYN 1359
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 1204 to 1449 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 24/82(29%) | 0/82(0%) | Minus/Plus |
Query 113 LMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDFFEHLFLFSCLSELIEENVEVVMDNSW 358 ++P++ ++V FF ++ PN ++R ++ LD+F+ +LE FNFS+N D++ ++ + L + I+ NVE ++W Subject 1204 MLPDMKRIVQGFFLKLFPNPISRNFKVVQQLHLDNFIETLEEFNFSINTEDLSLNWKDDLEFINLTFGDIDFNVEESFASAW 1449
Range 1: 1208 to 1453 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 23/82(28%) | 0/82(0%) | Minus/Plus |
Query 113 LMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDFFEHLFLFSCLSELIEENVEVVMDNSW 358 L+PN+ KL+ +FF + P+++AR F++ SLD+F+ +E FNFSV I+ + + + ++ +++++ W Subject 1208 LLPNVWKLISNFFIGLFPDSVARNFKVFQQMSLDNFISEMEEFNFSVQTSTISLSWLDDIRFVDLNFDIKPVDIDLMFQKGW 1453
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 1193 to 1366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 24/58(41%) | 0/58(0%) | Minus/Plus |
Query 191 SLLMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITSDF 364 S+LMP +KL+ + F ++P +AR ++ CSLD F++ LEPF+FSV I F Subject 1193 SMLMPETAKLIGALFASLLPFKMARFFECYKACSLDKFIHDLEPFSFSVETKVINCRF 1366
Range 1: 1196 to 1363 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Plus |
Query 197 SLLMPNISKLVISFFCRMMPNALARLSSNFRECSLDSFVYSLEPFNFSVNLVDITS 364 S+LMP +KL+ S F +P +AR ++ CSLD F++ LEPF+FSV I S Subject 1196 SMLMPETAKLIGSLFSSFLPFKMARFFDCYKACSLDKFIHDLEPFSFSVETKVINS 1363
Nucleotide Sequence (327 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
237.5 | 765.2 | 58% | 3.365e-62 | 54% | NC_001948 | |
107.4 | 205.7 | 23% | 1.561e-27 | 50% | NC_008020 | |
102.3 | 181.4 | 26% | 1.539e-24 | 38% | NC_001361 | |
94.5 | 187.4 | 26% | 1.125e-24 | 47% | NC_013006 | |
95.0 | 192.0 | 26% | 1.126e-24 | 45% | NC_016080 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6350 to 6673 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
237.5 bits(512) | 0.0 | 97/108(90%) | 0/108(0%) | Plus/Plus |
Query 3 RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS 326 R+MGNLENCIDNYAIEVSYAYRLGEL+IEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALS FEFVGV+SVL+FPVV+HSVPGS Subject 6350 REMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGS 6673
Range 2: 6352 to 6609 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 66/86(77%) | 0/86(0%) | Minus/Minus |
Query 5 NVDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS 262 N D ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLT+N TQL* ASTSSS IIS+ +SP+ A*+TSIA*LS+QFSRLP+S Subject 6352 NADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMASSPSRYA*ETSIA*LSIQFSRLPIS 6609
Range 3: 6358 to 6672 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.3 bits(230) | 0.0 | 59/105(56%) | 0/105(0%) | Plus/Plus |
Query 11 G*SGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAIPGQK*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQISSCRS*RSW* 325 G G+L+* LC+ G+LC+ GR +*ND+ RS L LC I GQ+ A DEMLNF +*SY LGLK LA +YYE* S*S V +*VC C CA ISS S* +W* Subject 6358 GQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW* 6672
Range 4: 6357 to 6671 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.4 bits(215) | 0.0 | 57/105(54%) | 0/105(0%) | Minus/Minus |
Query 10 YQERYERQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PGIAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPDYP 324 YQ YE LEI*AH +H QTQ T L*L+YS* S++AK+LRPN *LQ KLSISS A *P I H+ + LL SSFQ P HR P HN Q + P P Subject 6357 YQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCP 6671
Range 5: 6464 to 6670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 43/69(62%) | 0/69(0%) | Minus/Minus |
Query 117 TRNAMNDNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISDQESHTVVV 323 TR+ MND WK +HT +T+KLK Q FN*+IHN MPNT*GLI SFK + N*ASHL+L+ DQES+T+++ Subject 6464 TRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIM 6670
Range 6: 6474 to 6671 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 43/66(65%) | 0/66(0%) | Plus/Plus |
Query 127 VCDSWSEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLSFIAFLV 324 V DSWS S R*DAQF LKL IRP*VFG++*+L*I *LK C LSL V VC +FQ SFI LV Subject 6474 VLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLV 6671
Range 1: 5892 to 6116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 45/75(60%) | 0/75(0%) | Plus/Plus |
Query 3 RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVI 227 ++ NL NCIDNYAIEVSYAY+LGEL++ MNEEE EA YNCVR +V+NKH ++ SIS LF+ I *+ + GV+ Subject 5892 KETNNLINCIDNYAIEVSYAYKLGELALCEMNEEEAEAMYNCVRIIVKNKHHLKSSISDLFQEIP*SCARSAGVM 6116
Range 2: 6153 to 6248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 16/32(50%) | 0/32(0%) | Plus/Plus |
Query 231 MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS 326 M+ LV F F V SVLR PV+ H VPG+ Subject 6153 MDLLVDVALEFGFTRVSSVLRSPVIFHCVPGA 6248
Range 3: 5894 to 6115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 37/74(50%) | 0/74(0%) | Minus/Minus |
Query 5 ITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS 226 ITP + + I+ N EIE CLF T TQL AS SSSFI NSP+L A*+TS+A*LS+Q +L +S Subject 5894 ITPAERAQLYGISWNKSEIEDFK*CLFFTMILTQLYIASASSSFISHRANSPSLYA*ETSMA*LSIQLIKLFVS 6115
Range 1: 5786 to 5977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 38/64(59%) | 0/64(0%) | Plus/Plus |
Query 3 RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAI 194 ++M NL NCIDNYAIEV+YAY+LGE ++ M+EEEV A YNCVR +VRNKH +R + +FE + Subject 5786 KEMNNLSNCIDNYAIEVAYAYKLGEKAVNRMDEEEVAAFYNCVRIIVRNKHLIRSDVKQVFEVL 5977
Range 1: 5856 to 6044 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 33/63(52%) | 0/63(0%) | Plus/Plus |
Query 3 RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEA 191 ++ NL NCIDNYAIEV+YAY++GE ++ MNEEEV+A YNCVR +++NKH ++ + ++E+ Subject 5856 KETNNLVNCIDNYAIEVAYAYQMGEKAVARMNEEEVDAFYNCVRVIIKNKHLLKSDVRLIYES 6044
Range 1: 5632 to 5814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.0 bits(201) | 0.0 | 36/61(59%) | 0/61(0%) | Plus/Plus |
Query 3 RDMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLF 185 ++ NL NCIDNYAIEVSYAY++GE ++ MNEEEVEA YNCVR +V+NKH ++ I ++ Subject 5632 KETNNLVNCIDNYAIEVSYAYKMGEKALCKMNEEEVEAFYNCVRIIVKNKHLLKSDIIDVY 5814
Range 2: 5858 to 5956 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 15/33(45%) | 0/33(0%) | Plus/Plus |
Query 228 IMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGS 326 IM+ LV L+ + FV ++L P+V+HSVPG+ Subject 5858 IMDVLVDILNKYNFVRHSTLLSIPIVIHSVPGA 5956
Range 3: 5634 to 5783 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.7 bits(124) | 0.0 | 33/50(66%) | 0/50(0%) | Minus/Minus |
Query 5 CLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPMS 154 CLFLT RTQL* ASTSSSFI+ SP L A*+TSIA*LS+Q ++L +S Subject 5634 CLFLTIMRTQL*KASTSSSFILHRAFSPILYA*ETSIA*LSIQLTKLLVS 5783
Nucleotide Sequence (1147 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
592.6 | 2630.9 | 34% | 2.264e-168 | 42% | NC_001948 | |
144.5 | 459.3 | 29% | 8.066e-68 | 29% | NC_009892 | |
117.5 | 472.2 | 25% | 7.367e-65 | 42% | NC_014821 | |
115.6 | 418.0 | 37% | 8.968e-61 | 28% | NC_003462 | |
116.5 | 419.7 | 29% | 1.282e-58 | 43% | NC_018714 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 6707 to 7843 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
592.6 bits(1287) | 0.0 | 256/379(68%) | 0/379(0%) | Minus/Plus |
Query 11 EDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPVDDWLGHWLGAAFPKKVKFAILRGQHTSISTWRAL*GRHQKHNILWSQTVIPKLWAFWSV*EFCAFNNCNSINGLHICTICLEFWFL*ALQLQP*SLHMSTAIMVIIMVVS*GLQGSQY*LRIVAQVRRLLQQLRKCWEV*RL*GLAXXXXXXXXXXXXXIWRAHQEGCQVSQMKLLRPD*NLWS 1147 EDE+FIAFTAGVPD+PNL+GRYIKPYSPGCAV GK+NILDEYLSV D SGFDVLFSDPYQNIS+P+EAHFIKSKTCRFG NTCKYL SFGF + SD D+VI GSPF LDVEGVLICFGKEAVDLA AHNS+FKLPCEVRG+TF+VVTLLKSRDPT +D+HWFYIAATRHR+KLIIMQ*+AFSA CELG+N++ +D WLGHW AAF ++VK + RGQH SI + AL GR++K+N+LWS+ ++P+LW +*EFCA N C+ N +H C +CLEFW * L L SL M TA++ V S G SQ+*L+ AQVR L R+CWEV*RL*GLA+L+KKLIIIV + W+ V+QM+LL+P *N WS Subject 6707 EDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRFGVNTCKYLSSFGFKVSSDGLDKVIVGSPFTLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ*DAFSAACELGKNHNSIDSWLGHWACAAFSEEVKSTLFRGQHPSIPSRWALQGRYKKYNLLWSKAILPQLWDIRPI*EFCALNACHRSNRIHTCIVCLEFWSW*EL*LPSKSLLM*TAVVATTKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS 7843
Range 2: 6709 to 7842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
489.5 bits(1062) | 0.0 | 231/378(61%) | 0/378(0%) | Plus/Minus |
Query 12 LQRFQSGLKSFI*LTWQPSWWARHMTMLTMIINFFTNMANP*SLQTSQHFLNC*SKRLTWATILN*Y*LPCSPYETTMIITIIAVDMCKD*GCNCSAYKNQNSKQIVHIWRPLILLQLLKAQNSQTDQKAQSLGMTVWDHNMLCFWCRPYNALHVEIDVCCPLSMANLTFLGNAAPSQCPSQSSTG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPKDRRYLHVFSPNLQVFDFMK*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSS 1145 LQRF G KS I* T + H LTMIINFF + ANP*SLQTSQH L+ K LTWA + N *L P E T+++ AV M KD N ++Y++QNSKQ +H+ L L Q L+AQNSQ + +QS G DH+ L F RP NA ID CCPL+ +LT NAA +QCPSQ S F PNSQ AEKA +CM+INF LCLVAAM*NQCLSS VGSLDF +VTT V P TSQG+L SELCA A+STASLPK ISTPSTS+ G+P +T S SL LKPK+ RYL VF+PNLQVFD MK ASLG L+F YGSEN+TSKPE S TD+YSSS+ FP TA PGE GLMYLP RLG+SGTPAVKAMK SS Subject 6709 LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVVATTAVYMSKDLDGNYNSYQDQNSKQTIHV*MRLDL*QALRAQNSQIGRISQSWGRIALDHSKLYFLYRPCNAHREGIDGCCPLNKVDLTSSENAAQAQCPSQLSMELWFLPNSQAAEKASYCMIINFSLCLVAAM*NQCLSSGVGSLDFKRVTTLKVEPLTSQGNLNSELCATARSTASLPKHISTPSTSSVKGDPTMTLSKPSLLTLKPKEERYLQVFTPNLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSS 7842
Range 3: 6707 to 7840 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.7 bits(877) | 0.0 | 208/378(55%) | 0/378(0%) | Plus/Minus |
Query 14 PKISVWPQKLHLTHLATFLVGSPYDNVNNDNQFLHQYG*PLKPSNXXXXXXXXXXXXXXGHNSQLILTPL*PL*DNHDYHHYCCRHVXXXXXXXXXXXEPEFQTDSTYMEAVNTITIIKGTKFSD*PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLPMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKAN*HTLNIQLKWRTCNHFIRPVTMQIKTKGQKVLTCIFTKSAGL*LYEVSLPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPFYSTTRRVWLDVPPREVGSVGNAGRKGYETLVL 1147 P I QK HL H P+ NNDNQFL Q+G*PLKPSNLPA P Q PHLG + Q LT P * N HYCC H QG G QLQ L PEFQTD+T M A+ +T IKGTKFSD P PELG DC GPQ V+L VPSL*RPP GN* MLSPE G+FDFLRKCST PMPKP VNGV+V AQFAGC*KGI LHD QFLP+SC SNV+PV I+ G I *FQ ++K TS TR FE ++R+ I+CLL KA *H NI K R N F++ VT +KT+G K+ I K *L E+ L N D+L+WVR+ H+KT + Q+LIKY+ P++ T R+ L+VP E+ +V N + YE L+L Subject 6707 PAILAGLQKPHLIHRGVSQFDLPFSQFNNDNQFLQQHG*PLKPSNLPAPPSQWMQGPHLGRSFQSKLTLQWP**SNLGGCHYCCLHEQGFGWQLQFLPRPEFQTDNTCMNAIRPMTSIKGTKFSDWPNIPELGKDCFGPQ*VILFVPSL*RPP*GN*WMLSPE*GRFDFLRKCSTSPMPKPTVNGVMVFAQFAGC*KGILLHDYQFLPVSCSSNVKPVPILWGWIS*FQKSYDVKS*TSNFTR*FEFRVVRNSEIHCLLTKAY*HPFNI*CKRRPHNDFVQTVTANLKTEGGKIFASIHAKPTSF*LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILIL 7840
Range 4: 6708 to 7544 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.0 bits(727) | 0.0 | 174/279(62%) | 0/279(0%) | Minus/Plus |
Query 310 RTRVS*PLRPAFPTLPTSLGGTSSHTLLVVL*KGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGRLTS*SQRPADLVKIHVSTFCPLVLICIVTGLMK*LQVRHLSWMLRVC*FAXXXXXXXXXXXXXXISNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIGRN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTASIYVLSVWNSG 1146 R R+S* + F T S GT S L V +G+ YLMS C F VL C TH K S F R S SQ+ L I + F P VL VT K L R L ML+ C*+AL RRQ I LR SN+LV+ EV L +*NQ I+P I TG TLL QD GRN* SCS+MPFQQPANWAKTITPLT+GLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSG+FGQSENFVPL++VI L A I+VLSVWNSG Subject 6708 RMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQKLVGLA*ILANIFPPSVLRLAVTVWTKSLWGRLLH*MLKGC*YALVRRQWISLLRTTLNSNYLVKLEVQLLTS*LF*NQEIQPQRIGTGFTLLLQDTGRN**SCSKMPFQQPANWAKTITPLTVGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGIFGQSENFVPLMLVIGLIAFIHVLSVWNSG 7544
Range 5: 7590 to 7841 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 45/84(54%) | 0/84(0%) | Minus/Plus |
Query 13 QQ*W**SWLSHKGYRGVNIN*ELWPK*GACFNS*GSAGRFEGFRG*PYW*RN*LSLLTLSYGEPTRKVAR*VK*SF*GQTEIFG 264 QQ*W L H G+ VN +*+L PK*G C + G AGRFEGFRG*P *RN*LSLL G+ + R*+K* F* +I G Subject 7590 QQ*WQPPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGAGRFEGFRG*PCC*RN*LSLLNWLNGKSNWETPR*IK*GF*SPAKIAG 7841
Range 6: 7516 to 7851 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 92/112(82%) | 0/112(0%) | Minus/Plus |
Query 3 YMYYLFGILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVKEVLGGLKALGVSHIGEEIDYHC*HCHMASPPGRLPGESNEAFEARLKSLELAR 338 YMY LFGILVLVG IA ILAHVDS++G++ GC IRATGESILIENCGPSEALASTVKEVLGGLKALGVS EEIDYHC* MAS G+LPGESNEAFEARLKSLELAR Subject 7516 YMYCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELAR 7851
Range 7: 7036 to 7458 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 77/141(55%) | 0/141(0%) | Minus/Plus |
Query 396 C*GCANLLWQGGS*FSGCA*FRFQTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*EEIDHHAVKCLFSNLRIGPKLSPR*RLAWALAWCCIS*ESQICHTQGTTYINFHMEGVIGTAPKA*HIVVPNSHSQALGF 818 C* AN+LW GGS CA Q +L* R * EIK S+ R *ALVLHCC KT EID+HAV+CLFS+LRIG K *+LAWAL CCI * SQI QGTT IN GV GT K * VV ++ S ALG+ Subject 7036 C*RGANMLW*GGSGSRCCAQL*IQITL*S*RFNF*RRNSFEIKRSNPRG*ALVLHCCYKTQGEIDNHAVRCLFSSLRIGQKP*LH*QLAWALGLCCIF*GSQIYLIQGTTSINSLTVGVTGTVQKV*LTVVQSNPSPALGY 7458
Range 8: 6709 to 6981 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 38/91(42%) | 0/91(0%) | Minus/Plus |
Query 873 GREFHSLYGRRSRHSQPLWEVHQAILSWLCCKREDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGSLHKVKDLQIW*KYM*VPSVLWF* 1145 G EFHS + R SR +VH A+ S +C RE +T**V V F F* + PI K+Q S G+ H+VK+L +W +Y+ + +L F* Subject 6709 G*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL*VWREYLQISFLLRF* 6981
Range 9: 7533 to 7853 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 80/107(75%) | 0/107(0%) | Plus/Minus |
Query 1 ALASSKDFSLASKASFDSPGNLPGGLAI*QC*Q**SISSPIWLTPKAFKPPSTSLTVEASASLGPQFSINIDSPVALMRQP*LSPLLLSTCARIRVAIAAPTRTRIP 321 ALA+S DFS ASKASFDSPG+ P LAI *Q**SISS LTPKAFKPPSTS TV+A ASLGPQFSI IDSPVALM+QP PLLLST ARI +AI PT+TRIP Subject 7533 ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPWWLPLLLST*ARIWMAITIPTKTRIP 7853
Range 10: 7155 to 7481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 66/109(61%) | 0/109(0%) | Plus/Minus |
Query 373 HKILRLTKKPRAWE*LFGTTICYAFGAVPITPSMWKLMYVVP*VWQI*LS*EMQHXXXXXXXXXXGDSFGPIRRLLKRHFTA**SISSYVLLQQCRTSAYHRRSDPLIS 699 HKILRL + PRA E L TT+ Y F VP+TP++ +LM VVP*+ I*L +MQH+ NAQAN Q F PIRRLLKRH TA* SIS VL QQC+TSAY D LIS Subject 7155 HKILRLAEYPRAGEGLLWTTVSYTFCTVPVTPTVRELMDVVP*IR*I*LPQKMQHKPNAQANCQWSYGFCPIRRLLKRHLTA*LSISPCVL*QQCKTSAYPLGLDLLIS 7481
Range 11: 6768 to 6980 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 30/71(42%) | 0/71(0%) | Plus/Minus |
Query 874 *NQRTEGTYMYFHQICRSLTL*SEPPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSLLQHNQESMA*CT 1086 *N+R + Y Q + LT *+ P E * F MG + QN K +T THQV SL H E+ A*CT Subject 6768 *NRRRKDICKYSRQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CT 6980
Range 1: 6638 to 7069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 63/144(44%) | 0/144(0%) | Minus/Plus |
Query 698 AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLL 1129 AF+ G PD PN+ GRYIK G G ILDEYLS +GFD FSDP+QN AHF+ + RFG NT L S G++++S + DE+I + F ++EG +IC K D ++ +++LPC+VRG+TF+VVT + Subject 6638 AFSFGEPDLPNIWGRYIKKAISGQKGTGSFCILDEYLSGEFGTGFDCFFSDPHQNSGDCAPAHFVGRSSQRFGRNTAGLLQSLGYSVNSAKDDELIFENVFRAELEGAVICVEKNVEDFLRWNHCEYRLPCQVRGSTFEVVTFI 7069
Range 2: 7163 to 7381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 41/73(56%) | 0/73(0%) | Minus/Plus |
Query 391 MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFG 609 MP QP +++K++ PL IGL +G+V+ L +S LP++GDNIH PHGG Y DGTK I YCGPK+SFP+ G+ G Subject 7163 MPLAQPPDFSKSVFPLAIGLAVGIVIFALTRSTLPHAGDNIHHLPHGGSYVDGTKKINYCGPKESFPTPGVLG 7381
Range 3: 7446 to 7601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 15/52(29%) | 0/52(0%) | Minus/Plus |
Query 162 ILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK 317 +++ V AA+ LI+ ++ C I TGES+ + NC S +K Subject 7446 VIIAVFAALLALIILNIVFGANSCDPCQIIITGESVKVFNCNLSPEFLEVLK 7601
Range 4: 7109 to 7150 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.0 bits(46) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Plus |
Query 617 YIAATRHRKKLIIM 658 YIA TRH KK+ I+ Subject 7109 YIALTRHSKKIQIL 7150
Range 5: 7162 to 7380 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 29/73(40%) | 0/73(0%) | Plus/Minus |
Query 392 PKSPELGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGI 610 PK+P +G GPQ ++ LVPS * PP G * MLSP G ++ T P +P+ G + GC +GI Subject 7162 PKTPGVGKLSFGPQ*LIFLVPST*LPPWGR**MLSPA*GSVLRVKAKITIPTARPMAKGNTDFEKSGGCARGI 7380
Range 6: 6883 to 7065 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 26/61(43%) | 0/61(0%) | Plus/Minus |
Query 702 KVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVITSSDLSLCKLKPK 884 KVTTS V PRT QGSL S+ KS+ Q++ PS+S ++SS L+L L P+ Subject 6883 KVTTSKVEPRTWQGSLYSQWFQRRKSSTFFSTQMTAPSSSALKTFSKMSSSSLALFTL*PR 7065
Range 7: 6637 to 6828 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 26/64(41%) | 0/64(0%) | Plus/Minus |
Query 939 K*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKA 1130 K*A + F* GSE S P + +RYSSSM P P M P+ G SG+P KA Subject 6637 K*AGAQSPEF**GSEKKQSNPVPNSPERYSSSMQKLPVPF*PEMAFFM*RPQMFGRSGSPKEKA 6828
Range 1: 7347 to 7601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 43/85(51%) | 0/85(0%) | Minus/Plus |
Query 355 MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVI 609 MPF QP +++K++ P+ IG + LVL L +S LP GDNIH PHGG Y+DGTK I+YCGPK SFPSS L + ++I++ Subject 7347 MPFSQPPDYSKSVFPIAIGAAVALVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKNSFPSSSLISSGTPMIIIVILL 7601
Range 2: 6821 to 7129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 45/103(44%) | 0/103(0%) | Minus/Plus |
Query 821 AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL 1129 A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN AHFI + RFG T + L + G+N+ S + D V + F L Subject 6821 AVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQVLRNLGYNIASSKEDIVEKKNIFRL 7129
Range 3: 7130 to 7264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.6 bits(126) | 0.0 | 22/45(49%) | 0/45(0%) | Minus/Plus |
Query 689 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR 823 ++ EG +IC KE D A H+ ++KLPC+VRGATFD VT + + Subject 7130 VEPEGAIICLEKEVEDFLAWHHVEYKLPCQVRGATFDTVTFIHEK 7264
Range 4: 7581 to 7631 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 11/17(65%) | 0/17(0%) | Minus/Plus |
Query 319 LIIVIVLTASIYVLSVW 369 +IIVI+LTA+IYV W Subject 7581 IIIVILLTAAIYVSERW 7631
Range 5: 7292 to 7336 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 8/15(53%) | 0/15(0%) | Minus/Plus |
Query 617 FYIAATRHRKKLIIM 661 +Y+A TRHR KL+++ Subject 7292 WYVALTRHRHKLVLV 7336
Range 6: 7126 to 7326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 30/67(45%) | 0/67(0%) | Plus/Minus |
Query 627 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS 827 N LCLV+A ++ + KVT S VAPRT QG+L S C A KS+ S +QI PS S S Subject 7126 NLCLCLVSATYQSGPTNSSRGFSWMKVTVSKVAPRTWQGNLYSTWCQARKSSTSFSRQIIAPSGSTS 7326
Range 7: 7334 to 7549 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 31/72(43%) | 0/72(0%) | Plus/Minus |
Query 407 LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGISLHD 622 LG + LGPQ ++LLVPS * PP G MLSP GK ++ T+ PI G +L G KGI + D Subject 7334 LGKEFLGPQ*LILLVPS**LPP*GKL*MLSPTCGKVLRVKVNRTRATAAPIAIGKTLLE*SGGWEKGILIRD 7549
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 7378 to 7650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 42/91(46%) | 0/91(0%) | Minus/Plus |
Query 343 SEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA 615 + MPF QP +++K++ P+ +G+ + +VL L +S LP GDNIH PHGG Y+DGTK I+YCGP+ SFPSS L + II+ ++ A Subject 7378 TSMPFAQPPDYSKSVFPIAVGIAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPRDSFPSSSLISSGTPMIIGIIIFLIFA 7650
Range 2: 6858 to 7166 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 45/103(44%) | 0/103(0%) | Minus/Plus |
Query 821 AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL 1129 A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN AHFI + RFG T + L G+N+ S + D V + F+L Subject 6858 AVTFGVPEKANIHGTYIKKARQGQRGRGNYSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGRQTVQILRDLGYNIASSKEDIVEKKNIFQL 7166
Range 3: 7167 to 7301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 20/45(44%) | 0/45(0%) | Minus/Plus |
Query 689 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR 823 ++ EGV+IC K D H+ ++K PC+VRGATFD+VT + + Subject 7167 IEPEGVIICLEKGVEDFLKWHSVEYKFPCQVRGATFDIVTFIHEK 7301
Range 4: 7676 to 7834 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 15/53(28%) | 0/53(0%) | Minus/Plus |
Query 162 GILVLVGAAIATLILAHVDSNNGDNHGCLIRATGESILIENCGPSEALASTVK 320 G+ V ++L ++ C I TGES+ + C SEA VK Subject 7676 GLAVAAAVVAYLVLLLAQQLYMSNSSQCTIVITGESVSVVGCVYSEAFIELVK 7834
Range 5: 7163 to 7285 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 23/41(56%) | 0/41(0%) | Plus/Minus |
Query 705 VTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS 827 VT S VAPRT QG+L S LC KS+ +QI TPS S S Subject 7163 VTMSKVAPRT*QGNLYSTLCHFRKSSTPFSRQIMTPSGSIS 7285
Range 6: 7425 to 7586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 23/54(43%) | 0/54(0%) | Plus/Minus |
Query 407 LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNG 568 LG + LGPQ ++L VPS * PP G +LSP GK + ST P G Subject 7425 LGKESLGPQ*LILFVPS**LPP*GKL*ILSPTCGKVLLVNVNSTTATAMPTAIG 7586
Range 7: 6857 to 7051 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 26/65(40%) | 0/65(0%) | Plus/Minus |
Query 936 MK*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKA 1130 MK*A + F GSE P D+YSS M P P L+Y+P L SGTP V A Subject 6857 MK*ALRQSP*FW*GSEKRQLNPVEYSPDKYSSRML*LPLPLCPCLAFLIYVPWMLAFSGTPKVTA 7051
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 7352 to 7618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
116.5 bits(248) | 0.0 | 43/89(48%) | 0/89(0%) | Minus/Plus |
Query 343 MPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYSGDNIHQFPHGGRYRDGTKSITYCGPKQSFPSSGLFGQSENFVPLIIVIVLTA 609 MPF QP +++K++ P+ +G+ + +VL L +S LP GDNIH PHGG Y+DGTK I+YCGPK SFPSS L + II+ ++ A Subject 7352 MPFSQPPDYSKSVFPVAVGVAVAVVLFTLTRSTLPQVGDNIHNLPHGGNYQDGTKRISYCGPKDSFPSSSLISSGTPLIVGIIIFLIFA 7618
Range 2: 6826 to 7134 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 45/103(44%) | 0/103(0%) | Minus/Plus |
Query 821 AFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRFGENTCKYLLSFGFNLHSDRSDEVITGSPFEL 1129 A T GVP+ N+ G YIK G +G +ILDEYLS +GF+ LFSDPYQN AHFI + RFG T + L G+N+ S + D V + F+L Subject 6826 AVTFGVPEKANIHGTYIKKARQGQRGRGNFSILDEYLSGEYSTGFNCLFSDPYQNHGDCLRAHFIGRCSHRFGNQTVQLLQGLGYNIASSKQDIVERKNIFQL 7134
Range 3: 7135 to 7269 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 20/45(44%) | 0/45(0%) | Minus/Plus |
Query 689 LDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSR 823 +D EGV+IC + D H+ ++KLPC+VRGAT+D+VT + + Subject 7135 VDPEGVIICLEESVEDFLKWHSVEYKLPCQVRGATYDIVTFIHEK 7269
Range 4: 7351 to 7554 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 29/68(43%) | 0/68(0%) | Plus/Minus |
Query 407 LGNDCLGPQYVMLLVPSL*RPPCGN*CMLSPEYGKFDFLRKCSTKPMPKPIVNGVIVLAQFAGC*KGI 610 LGN+ GPQ ++ LVPS * PPCG +LSP +GK ++ ST P G +L G KGI Subject 7351 LGNESFGPQ*LIRLVPSW*LPPCGKL*ILSPTWGKVLLVKVKSTTATATPTATGKTLLE*SGG*EKGI 7554
Range 5: 7131 to 7331 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 31/67(46%) | 0/67(0%) | Plus/Minus |
Query 627 NFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNS 827 N LCLV A L+S VT S VAP T QGSL S LC KS+ +QI TPS S S Subject 7131 NLVLCLVKATKRSGLTSSSRGFS*INVTMSYVAPLTWQGSLYSTLCHLRKSSTLSSRQIITPSGSTS 7331
Range 6: 6816 to 6989 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.1 bits(92) | 0.0 | 26/58(45%) | 0/58(0%) | Plus/Minus |
Query 966 F*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKL 1139 F*YGSE KP DRYSS + FP P LM +P SGTP V A L Subject 6816 F*YGSEKRQLKPVEYSPDRYSSRILKFPLPLCPCLAFLM*VP*MFAFSGTPNVTASML 6989
Nucleotide Sequence (350 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
260.4 | 1196.9 | 34% | 4.75e-69 | 74% | NC_001948 | |
51.0 | 160.7 | 35% | 1.367e-14 | 36% | NC_018714 | |
62.5 | 95.2 | 26% | 1.204e-13 | 27% | NC_009892 | |
51.0 | 160.7 | 38% | 3.473e-14 | 41% | NC_003462 | |
49.6 | 95.2 | 24% | 1.203e-13 | 39% | NC_014821 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3227 to 3574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.4 bits(562) | 0.0 | 105/116(91%) | 0/116(0%) | Plus/Plus |
Query 2 QIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALKAGIRSFVESERLISSDLSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKFGESEWPLCGILSSK 349 QIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDG ALKAGIRSFVESERL+S DLSAP ISKQLEENA AE+EMIALFCIRHHVR IV+TPEYEVSWKFGE EWPLCGIL K Subject 3227 QIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLK 3574
Range 2: 3262 to 3573 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.4 bits(460) | 0.0 | 90/104(87%) | 0/104(0%) | Minus/Minus |
Query 37 LEERIPHRGHSLSPNFQLTSYSGVTTISLTWCRIQNNAIISLSAQAFSSNCLEIVGAERSELIRRSLSTKDRMPAFRAKPSVLSKKPTECQKQLPSPGTEKVLK 348 L +RIPHRGHS SPNFQLTSYSGV TI LTWCR+QNNAIIS SA AFSSNCLEI GAERS L +RSLSTKDR+PAFRA PSVLSKKPTECQKQLPSPGTEKVLK Subject 3262 LRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLK 3573
Range 3: 3227 to 3565 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 85/113(75%) | 0/113(0%) | Minus/Minus |
Query 2 KNST*GPLTFPKFPTNFIFWCYYYQPYVVPDTK*CNHLTLGTSILLQLFRNSWS*KI*TNKALTLHKRSNAGLQSKTISTEQETN*MPKAIAITRYGESVKIINIIISTCLNL 340 KNST*GPLTFP+FPTNFIFWC +Y+PYVVP+ +*C+HL LG SIL QLFRN W *KI T +ALTLH+RSN GL K+IS + +TN MPKAIAITR+ ESVKIINIIISTCLNL Subject 3227 KNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNL 3565
Range 4: 3228 to 3485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.5 bits(320) | 0.0 | 64/86(74%) | 0/86(0%) | Minus/Minus |
Query 3 RGAGYKIMQSSHSRHKHSPPIV*K*LELKDLN**GAHSPQKIECRPSEQNHQY*ARNQLNAKSNCHHQVRRKC*NHQYHNQHMPQS 260 RGA +IM+SSHSRHKHS PIV*K L LKDL+ AHSP+KIE RP Q HQ * +NQ NAKSNCHHQ +RKC*NHQYHNQHMPQS Subject 3228 RGAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQS 3485
Range 5: 3522 to 3566 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 13/15(87%) | 0/15(0%) | Minus/Minus |
Query 297 KEFHIGATHFPQISN 341 KEFHIGATH P+ISN Subject 3522 KEFHIGATHLPRISN 3566
Range 6: 3226 to 3381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.8 bits(194) | 0.0 | 40/52(77%) | 0/52(0%) | Plus/Plus |
Query 1 PD*GMC*L*Y**F*HFLRTW*WQLLLAFSWFLAQY*WFCSEGRHSIFCGE*A 156 PD*GMC*L*Y**F*HFL W*WQLLLAF WF +*W C +GR+SIF GE*A Subject 3226 PD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTCPKGRYSIFRGE*A 3381
Range 7: 3421 to 3564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 39/48(81%) | 0/48(0%) | Plus/Plus |
Query 196 TIGGECLCRE*DDCIILYPAPRKADSSNTRI*S*LEIWGK*VAPMWNS 339 TIG ECLCRE*DD IIL+ APRKA S +TRI*S*LEI G+*VAPMWNS Subject 3421 TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNS 3564
Range 8: 3348 to 3566 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 57/73(78%) | 0/73(0%) | Plus/Plus |
Query 123 RPAFDLLWRVSAXXXXXXXXXXXXNNWRRMLVPRVR*LHYFVSGTT*G****HQNMKLVGNLGKVSGPYVEFF 341 RP FDL WRVSA VQIFQ Q FLNNW+RML+PR+R* HY GTT*G ** HQNMKLVGN GKVSGPYVEFF Subject 3348 RPVFDLSWRVSAW*VQIFQPQQFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVEFF 3566
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3316 to 3417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 19/34(56%) | 0/34(0%) | Plus/Plus |
Query 23 YDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALK 124 ++ D F++F V DGNCFWHSVG L+ DG LK Subject 3316 FEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK 3417
Range 2: 3430 to 3597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 20/56(36%) | 0/56(0%) | Plus/Plus |
Query 152 ERLISSDLSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKFGESE 319 ++ + + P +SKQLE N AE E +A FC + +RL V+ E +W F E Subject 3430 DQALKDGVKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHE 3597
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3315 to 3416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 19/34(56%) | 0/34(0%) | Plus/Plus |
Query 23 YDIDDFNTFSVPGDGNCFWHSVGFLLSTDGFALK 124 ++ D F++F V DGNCFWHSVG L+ DG LK Subject 3315 FEPDLFHSFDVEADGNCFWHSVGPLIGVDGEYLK 3416
Range 2: 3450 to 3596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 20/49(41%) | 0/49(0%) | Plus/Plus |
Query 173 LSAPTISKQLEENACAESEMIALFCIRHHVRLIVVTPEYEVSWKFGESE 319 + P +SKQLE N AE E +A FC + +RL V+ E +W F E Subject 3450 VKCPRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHE 3596
Nucleotide Sequence (675 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
476.7 | 1544.6 | 30% | 9.454e-134 | 44% | NC_001948 | |
166.0 | 480.8 | 21% | 8.457e-69 | 33% | NC_009991 | |
164.6 | 457.3 | 18% | 5.128e-67 | 36% | NC_009892 | |
168.3 | 453.9 | 37% | 7.037e-67 | 31% | NC_011525 | |
165.1 | 384.6 | 32% | 7.034e-67 | 40% | NC_028111 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 536 to 1204 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
476.7 bits(1034) | 0.0 | 193/223(87%) | 0/223(0%) | Minus/Plus |
Query 6 SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFTPINNLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL 674 +L++LVPRVISTGARNLFLHDEIHYWSI DLI FL+V +P+MLLATAVIPPE+LV SPESLNPWAYQY+I+ Q+LFAPDGNW EMYSQPLS RYLLKARSVVL DGSRY+VD++HSKF HHLLSFTP+ NLL SN+RCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLI+KPTGREIKFIEDF+SLVI+CGRSGSLL Subject 536 TLRRLVPRVISTGARNLFLHDEIHYWSISDLINFLDVAKPSMLLATAVIPPEVLVGSPESLNPWAYQYKINGNQLLFAPDGNWNEMYSQPLSCRYLLKARSVVLPDGSRYSVDIIHSKFSHHLLSFTPMGNLLTSNMRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIEKPTGREIKFIEDFSSLVINCGRSGSLL 1204
Range 2: 538 to 1203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
383.2 bits(830) | 0.0 | 175/222(79%) | 0/222(0%) | Plus/Minus |
Query 7 SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMASKPEKHRMLETRRLLIGVKLSK**QNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLS 672 S+EPLLPQ +TSE KSS+N ISLPVG S+S R+FASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGS+S MP+ASKPEKHRM E +RL IGVKLSK * NFE ST *REPS +TTDLALS+YL D GCEYIS QLPSGAKS W ILYW*AQG +LSGE T SGGITAVA+SMLGL TS+K++RS IDQ**ISS RKRFLAPVEITRGTN S Subject 538 SKEPLLPQFITSEEKSSINFISLPVGFSMSCRSFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSRSFMPIASKPEKHRMFEVKRLPIGVKLSKW*LNFE*MMSTE*REPSGRTTDLALSRYLHDKGCEYISFQLPSGAKSSWLPLILYW*AQGLRLSGEPTSTSGGITAVAKSMLGLATSKKLIRSLIDQ**ISSCRKRFLAPVEITRGTNLRS 1203
Range 3: 543 to 1199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 103/219(47%) | 0/219(0%) | Plus/Minus |
Query 11 ESHFFHNL*QVKQNPQ*I*SPFQLVCR*ADAISPRQIPYQAF*GFSNKDIF**QHHDAPGSSYACRDLEAPNP*CRWRQNQRNTEC*KLEDY*LG*SSVSDDRILNGGHRPHSVNHQIRPQT*L*ANTYLTMVVNTFHTSYHPEQRAFGPQKFYTGKPKGLSFQESXXXXXXXXXXXXEACWA*PLPGR**DHV*TSNEFHHGEKDSLHL*R*HEGPIS 667 +SH HNL V++NP+* SP V * PRQ PY A * FSNKDI * QHHD GS+ ACR LE + C ++Q+N C K +DY G*+ S D IL+ +P SV+H+ Q *A +T VV+T H+S H +RA G FYTG+PKG ESQ L L AC A P * DH TS+E HH EKDS HL + H GPIS Subject 543 KSHSSHNLLLVRKNPR*TLSPSLWVFL*VVEALPRQTPYLAS*EFSNKDIS*LQHHDVLGSNCACRGLEVQDLLCLLHRSQKNIACLKSKDYP*G*N*ASGD*ILSE*CQPSSVSHRAELQIWP*AGICMTKVVSTSHSSCHLVRRAVGCH*FYTGRPKG*DSLESQPALLEGLLQLPRACLAWQRPKN*SDH*LTSSESHHAEKDSWHLWKLHVGPIS 1199
Range 4: 736 to 1197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 71/154(46%) | 0/154(0%) | Minus/Plus |
Query 13 V*NF*GPNALCSGW*LV*NVFTTIVK*VFA*S*VCGLI*WFTLCGRCPPFKILSSLTELHPNQ*SSSF*HSVFLWF*RHRH*GFGASKSRHA*LLPGAS*CCY*NISLFENPQKA**GICRGEIASAYRQTNWKGD*IH*GFCFTCHKLWKKWL 474 V*N P AL + W L *+V TT V + A +C W TL G KI S L HP *S F H++F W +RH SK RHA LLP S*CC *+ISLFEN Q+A *G+CRG+ ++ +R+T+ +GD ++ GF T +KLW++WL Subject 736 V*NQWQPTALRTRWQLE*DVLTTFVMQIPAQGQICSSARWLTLLG*HHSLKI*SPLA*FHPYG*SFDFKHAMFFWLRCNRHKRS*TSKPRHAQLLPSTS*CCN*DISLFENSQEAR*GVCRGKASTTHRKTHREGDKVYRGFFLTSNKLWEEWL 1197
Range 5: 544 to 663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 23/40(57%) | 0/40(0%) | Minus/Plus |
Query 547 EIGPSCYLYRCKESFSP**NSLLVYT*SHHLPGSG*AQHA 666 EIGP+C +RC+ESFS **+SLLV *S G A+HA Subject 544 EIGPTCNFHRCQESFSA**DSLLVN**SDQFFGRCQAKHA 663
Range 6: 881 to 1198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 51/106(48%) | 0/106(0%) | Plus/Minus |
Query 12 RATSSTTYDK*SKILNEFNLPSSWFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHREAAMHAAT*RLQILNADGVKTRETPNVRN*KIIDWGEAQ*VMTEF*M 329 RAT T Y * KIL++ LP F +L++ LGR LI L E SQIKIY S NIMM+ EA +HAA *R +I A ++ R+T +V + KI GE + V+T+F*+ Subject 881 RATPPTIYY**GKILDKLYLPPCGFFYELSKLCLGRLLIWLLESSQIKIYLSYNIMMYWEATVHAAA*RFKIFYAYCIEARKTSHV*SQKITHRGETKQVVTKF*V 1198
Range 7: 548 to 826 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 41/93(44%) | 0/93(0%) | Plus/Minus |
Query 384 KQIPT*QWL*IHFTPVTIRSKEHLALRNSILVSPRV*AFRRVNKDFRGYYSCCKKHVGPNHFQEGDEITYRPVMNFIMEKKIPCTCRDNTRDQ 662 +Q+ *Q L*+H PV I +E L + ILV PRV R N+ F Y C++H + Q+ D+IT PV+N IM+KKIP TC + T DQ Subject 548 EQVSA*QRL*VHLIPVAIWCEEQLVAIDFILVGPRVKTLWRANQHFWRDYCSCQEHAWLGNVQKIDQITN*PVVNLIMQKKIPGTCGNYTWDQ 826
Range 8: 738 to 1199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.7 bits(233) | 0.0 | 67/154(44%) | 0/154(0%) | Minus/Plus |
Query 11 IEFLRAKCSLLRMVTGVKCIHNHCQVGICLKLGLWSYLMVHAMRSMSSIQNSVITY*ASPQSIIF*FLTFGVSLVLTPSALRIWSL*VAACIAASRCIMMLLLKYIFI*EPSKSLIRNLPRRNCVSLSTNQLEGRLNSLRILLHLS*VVEEVAL 472 I+ + CS +M TG++C HN C C + L M HA R S QN V T SP +IF* T V L A +I +L* AAC AS+ IMML L+YIFI*E S+S IR+LPR++ + N GR + RI H *+V VAL Subject 738 IKSMATNCSSHQMATGMRCTHNLCHADTCSRPDL*FCPMAHATRLTSFTQNLVTTCLVSPLWVIF*LQTCDVFLASMQ*A*KILNL*AAACTVASQYIMML*LRYIFI*ELSRSQIRSLPRQSFDNS*KNPQGGR*SLSRIFPH***IVGGVAL 1199
Range 1: 538 to 918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 67/127(53%) | 0/127(0%) | Minus/Plus |
Query 294 SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 674 +LK LVP ++ A++LF+HDEIHYWS RDLITFLEV++P ++ AT V PPE+LV S SL W Y++ + F PDG E Y QPL + YLLKA+ ++L DG Y VDV+ SKF HHL++ T Subject 538 TLKDLVPELMRKSAKHLFMHDEIHYWSARDLITFLEVIQPEVMYATMVYPPELLVGSKFSLFKWCYEFDVIGNDFFFYPDGVRTEGYLQPLKNGYLLKAKRILLPDGGVYHVDVVQSKFAHHLIAIT 918
Range 2: 940 to 1203 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
115.6 bits(246) | 0.0 | 49/88(56%) | 0/88(0%) | Minus/Plus |
Query 6 NIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL 269 N+R F FDA + LEPL+ + CFPV +VV+++Y YLRTLKKPD +SA AKL QLI +P+G EIKF++DFASL+IS S+L Subject 940 NVRAFGPFDATTCQGLEPLTSDVSHCFPVSFEVVSRVYRYLRTLKKPDVQSAMAKLSQLIPEPSGVEIKFLQDFASLIISTNTIKSIL 1203
Range 3: 963 to 1175 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 32/71(45%) | 0/71(0%) | Plus/Minus |
Query 34 MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMAS 246 M ++AKS NLIS P G I+ + A AD SGF V + RY L TTS TGKQ + GS +AS Subject 963 MINDAKS*RNLISTPDGSGINWLSLAMADWTSGFFSVRRYRYTLETTSKETGKQCETSLVSGSNPWQVVAS 1175
Range 4: 540 to 719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 29/60(48%) | 0/60(0%) | Plus/Minus |
Query 493 KLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLS 672 +L+ + T SGG T VA G TSR VMRSR Q* ISS R LA ++ GT LS Subject 540 RLNLDPTNNSGGYTMVAYMTSG*ITSRNVMRSRALQ*CISSCINRCLADFLMSSGTRSLS 719
Range 5: 765 to 905 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.7 bits(52) | 0.0 | 20/47(43%) | 0/47(0%) | Plus/Minus |
Query 307 K**QNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAK 447 K* N TST * PS ALS+ NGC S PSG K Subject 765 K*CANLLCTTSTW*TPPSGSNIRFALSR*PFFNGCR*PSVLTPSG*K 905
Range 6: 937 to 1173 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 29/79(37%) | 0/79(0%) | Plus/Minus |
Query 36 DK*SKILNEFNLPSSWFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHREAAMHAAT*RLQILNADGVKTRETPNVR 272 D+* K+L EFNL + WF +L +F GR I L + QI ++ N + +REA + A L L + +K + P+VR Subject 937 DQ*RKVLKEFNLHT*WFRYQLAEFSHGRLDIWLLQCPQISVHPGNYLKRNREAV*NIACQWL*PLASCCIKWSKCPDVR 1173
Range 1: 545 to 925 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 66/127(52%) | 0/127(0%) | Minus/Plus |
Query 294 SLKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 674 S+K L+P+ +S +R FLHDEIHYWS LI FL V+P M+LAT V PPEIL + ESLNPW Y+++I+ +++APDG E Y QPLS YLLK + L DGS Y++D++ S F HHL+ T Subject 545 SIKDLLPQCVSDSSRRFFLHDEIHYWSKEALINFLVSVQPEMILATVVYPPEILAGAKESLNPWCYKFQINGDDLIYAPDGCMQEAYIQPLSGCYLLKTSGIELPDGSFYSLDLVKSTFSHHLICIT 925
Range 2: 935 to 1189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 43/85(51%) | 0/85(0%) | Minus/Plus |
Query 27 LLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISC 281 L+ +R FSGF+A K + PL R + SCFP+H +++ +IY YLRTLKKPD +S+ AKL Q++ PTG EIKF E+F+ L+++C Subject 935 LINQKMRPFSGFEATSSKGISPLMRKVGSCFPIHPNLILRIYRYLRTLKKPDLQSSMAKLSQVLPNPTGPEIKFFEEFSKLLLNC 1189
Range 3: 958 to 1188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 37/77(48%) | 0/77(0%) | Plus/Minus |
Query 28 QLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMASKPEK 258 QL + SS NLIS PVG +* +FA D SGF VLK*RYIL C GKQ R++G +ASKP K Subject 958 QLSNNFENSSKNLISGPVGFGRT*LSFAMDDWRSGFFSVLK*RYILRIKFGCIGKQEPTLRIKGEIPFEEVASKPLK 1188
Range 4: 544 to 732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 30/63(48%) | 0/63(0%) | Plus/Minus |
Query 487 GFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLSE 675 GFKLS +ISGG T VAR + G T +RK +R+ + Q**ISS RK+ L E G+ E Subject 544 GFKLSLAPAKISGG*TTVARIISG*TETRKFIRASLLQ**ISS*RKKRLEESETH*GSRSFIE 732
Range 5: 959 to 1168 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.8 bits(85) | 0.0 | 25/70(36%) | 0/70(0%) | Plus/Minus |
Query 48 KILNEFNLPSSWFVDKLTQFRLGRFLIRLFEGSQIKIYFSNNIMMHREAAMHAAT*RLQILNADGVKTRE 257 K+L E N S LT+F G IRL + QI IY + I M+RE + R L G+K E Subject 959 KLLKELNFWPSGIWKNLTEFCHG*LEIRLLQRPQIAIYSEDQIWMYRETGTNLTHQRRNTL*GGGLKAAE 1168
Range 1: 552 to 929 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
168.3 bits(361) | 0.0 | 66/126(52%) | 0/126(0%) | Minus/Plus |
Query 294 LKKLVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 671 L++LVP ++ A+NLFLHDE+HYW+ RDLITFLEV++P+ LL T V PPE+L + +SLN W Y YR+ + ++ F PDG E Y QPLS YLL+ + DG Y VDV+ SKF HHL++ T Subject 552 LRELVPELMIKSAKNLFLHDELHYWTHRDLITFLEVLKPDKLLGTLVYPPELLKGAKKSLNSWCYTYRVDKDKLFFYPDGVHSEGYEQPLSGGYLLETSRITTRDGEVYCVDVVCSKFAHHLIAIT 929
Range 2: 936 to 1217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 50/94(53%) | 0/94(0%) | Minus/Plus |
Query 3 NLLVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLLD 284 +L+V R F+ F+AI K L L RG CFPV VV+K+Y YLRTLKKPD++SA AKL QL PTG EI FI+ FA LVI+ + SL++ Subject 936 DLIVPTQRSFAPFEAITSKGLNNLVRGKVECFPVCASVVSKLYRYLRTLKKPDEQSAMAKLSQLQANPTGEEIHFIQGFAKLVINTNKIDSLIN 1217
Range 3: 551 to 820 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 43/90(48%) | 0/90(0%) | Plus/Minus |
Query 403 NGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRFLAPVEITRGTNFLS 672 NGC S PSG K+ LY * Q FKL SGG T V S+ G +TS+KV+RSR Q** SS + RFLA + I GTN L+ Subject 551 NGCS*PSEWTPSG*KNNLSLSTLYV*HQEFKLFFAPFSNSGG*TKVPNSLSGFSTSKKVIRSRWVQ**SSSCKNRFLALLIINSGTNSLN 820
Range 4: 938 to 1186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 38/83(46%) | 0/83(0%) | Plus/Minus |
Query 34 MTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGKQLCMPRLRGSKSLMPMASKPEKHRMLETRR 282 +T+ AK M IS PVG + S N A AD SGFL V K Y L TT TGK +P + K L+ MASK K R + T R Subject 938 ITNLAKPWMKCISSPVGFA*SWLNLAIADCSSGFLSVRKYLYNLDTTLAHTGKHSTLPLTKLFKPLLVMASKGAKLRCVGTIR 1186
Range 5: 558 to 842 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 29/95(31%) | 0/95(0%) | Plus/Minus |
Query 381 FKQIPT*QWL*IHFTPVTIRSKEHLALRNSILVSPRV*AFRRVNKDFRGYYSCCKKHVGPNHFQEGDEITYRPVMNFIMEKKIPCTCRDNTRDQF 665 F+++ QWL + F I K+ +SI V+PRV F R FR ++ V + QEG++I P+M I+++ I R QF Subject 558 FEEVTATQWLLVAFRMDAIWIKKQFVFVHSICVAPRVQTFLRTL*QFRWVN*GAQQFVWLQYLQEGNQIPMGPIMKLIVQE*ILSAFNHQLRHQF 842
Nerine latent virus isolate Marijiniup 4, complete genome
Range 1: 579 to 947 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
165.1 bits(354) | 0.0 | 66/123(54%) | 0/123(0%) | Minus/Plus |
Query 294 LVPRVISTGARNLFLHDEIHYWSIRDLITFLEVVRPNMLLATAVIPPEILVDSPESLNPWAYQYRISEGQMLFAPDGNWCEMYSQPLSSRYLLKARSVVLSDGSRYAVDVLHSKFCHHLLSFT 662 + PR +R LF HDEIHYWS +DLI LE RP +LAT V PPEIL S ESLN W Y+Y+I G++ + PDG E Y+QPL S +LLK + + L DG Y VD++HSKF HHL+S T Subject 579 MFPRNFQGKSRKLFFHDEIHYWSRKDLIYMLEQFRPECILATLVCPPEILAGSKESLNKWCYEYKIDGGKLHYYPDGVHSEGYTQPLDSSFLLKTKKIQLDDGETYCVDLIHSKFSHHLISIT 947
Range 2: 960 to 1232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
110.1 bits(234) | 0.0 | 47/91(52%) | 0/91(0%) | Minus/Plus |
Query 6 LVSNIRCFSGFDAIGIKDLEPLSRGMHSCFPVHHDVVTKIYLYLRTLKKPDKESAEAKLRQLIDKPTGREIKFIEDFASLVISCGRSGSLL 278 + ++R F FDA+ L+PL R + FP+ +V++KIY YLRTL+KPD +SA AKL QL+ PTG EIKFIE+FA LVI G+ S+L Subject 960 ITDDVRTFGNFDAVSAGHLKPLGRNIGQAFPISINVISKIYRYLRTLQKPDVQSAIAKLGQLLVDPTGFEIKFIEEFAPLVIETGKMRSIL 1232
Range 3: 1046 to 1231 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 33/62(53%) | 0/62(0%) | Plus/Minus |
Query 7 SREPLLPQLMTSEAKSSMNLISLPVGLSIS*RNFASADSLSGFLRVLK*RYILVTTS*CTGK 192 S E +LP +T A SSMNLIS PVG + S* N A AD SGF RVL+ IL+ T GK Subject 1046 SIERILPVSITKGANSSMNLISKPVGSTKS*PNLAMADCTSGFWRVLRYL*ILLITLILMGK 1231
Range 4: 611 to 934 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 43/108(40%) | 0/108(0%) | Plus/Minus |
Query 307 K**QNFEWRTSTA*REPSDKTTDLALSKYLLDNGCEYISHQLPSGAKSIWPSEILYW*AQGFKLSGESTRISGGITAVARSMLGLTTSRKVMRSRIDQ**ISSWRKRF 630 K* +N E ST * PS LS+ L G S PSG +P ILY * FK S + +ISGG T VA G S ++S +DQ* ISS +K F Subject 611 K*WENLECMRSTQ*VSPSSN*IFFVLSRKELSKGWV*PSE*TPSG**CSFPPSILYS*HHLFKDSLDPAKISGGQTRVASIHSGRNCSSI*IKSFLDQ*CISS*KKSF 934
Nucleotide Sequence (349 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
270.5 | 1090.1 | 36% | 4.386e-72 | 59% | NC_001948 | |
103.7 | 202.1 | 46% | 8.441e-27 | 39% | NC_028975 | |
100.0 | 181.0 | 46% | 3.626e-25 | 42% | NC_028868 | |
104.6 | 197.0 | 46% | 1.58e-26 | 36% | NC_025388 | |
84.9 | 190.6 | 48% | 8.449e-27 | 42% | NC_009892 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 8011 to 8358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.5 bits(584) | 0.0 | 111/116(96%) | 0/116(0%) | Plus/Plus |
Query 1 GCIDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA 348 G IDELIRAFGESGI+ES QF+VAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTT+RRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA Subject 8011 GAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA 8358
Range 2: 8016 to 8357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.5 bits(477) | 0.0 | 99/114(87%) | 0/114(0%) | Minus/Minus |
Query 6 ALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDLFRSQKGLFPIKVDL*ELPTSEQWRAISIATLN*SLSDMPDSPNARINSSM 347 ALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLR VVTSLIIPAISDLFRSQ GL PI+VDL ELPTSEQ RAIS+AT N +LS MPDSPNARI+SS+ Subject 8016 ALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISMATSNCTLSAMPDSPNARISSSI 8357
Range 3: 8020 to 8358 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
173.8 bits(373) | 0.0 | 73/113(65%) | 0/113(0%) | Minus/Minus |
Query 10 RALICDSKEEVKGCKLFILIKSLLGPISGWNPRLQMDIPHDFRIVHAKSAHGSHFPYYSSNFRPIQVTEGTLSNQG*SLRATNIRAMACNIYRNVKLIAL*YARLTECSNQLI 348 R LICDS+E++KGCKLFILIKS LGP+S W PRLQMD+PHDF IVHAKS H PY S F + VT+ TL+NQG* L ATNIRA+ C IY ++KL A YAR T+C+NQL+ Subject 8020 RTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLANQG*PLGATNIRAVTCYIYGHIKLHAFSYARFTKCTNQLV 8358
Range 4: 8016 to 8354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 70/113(62%) | 0/113(0%) | Plus/Plus |
Query 6 HR*VDSSIR*VWHIRERSV*RCDRYCTPLL*CW*LSKINLDWKESLL*PE*V*NCWNNKGSDYHAQILHVLCENRVEYPSGDGDSTR*LGQEGI**E*KVCSL*LLPWSHR*E 344 +R DS I *+WH +R++* RY T LL*CW*L ++N DW+ES+L*P+ + N W+ KG D+ ILHVLC+NRVE+PSGDGD+T *LGQE I**E*KVCSL* SHR*E Subject 8016 NRRADSCIW*IWHS*KRAI*CGHRYSTSLL*CW*LPEVNPDWQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*E 8354
Range 5: 8024 to 8359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 71/112(63%) | 0/112(0%) | Plus/Plus |
Query 14 S*FEHSVSLAYQRAISLTLR*ILHAIALMLVALKDQP*LERVPSVT*IGLKLLE**GK*LPCADFACTMRKSCGISIWRRGFHPLIGPRRDLMRMKSLQPLTSSLESQMRAR 349 S*F H V+LA +A +L *I H ALMLVA + QP*L RV VT* K L *G+* DFACTM+KSCG SIWRRG+H L GPR+DLMRMKSLQPL S ESQMR R Subject 8024 S*FVHLVNLA*LKACNLMWP*I*HVTALMLVAPRGQP*LARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVR 8359
Range 6: 8027 to 8359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.4 bits(287) | 0.0 | 66/111(59%) | 0/111(0%) | Minus/Minus |
Query 17 ARSHL*LQGRSQRLQTFHSH*IPSWPN*RVESPSPDGYSTRFSHSTCKICAW*SLPLLFQQFQTYSGHRRDSFQSRLIFESYQHQSNGVQYLSQR*TDRSLICQTHRMLES 349 A SHL*L ++QRLQTFHSH*I SWP+* V SPSPDG STRF HSTCKI S PL Q F GH+ DS QS L SYQHQS+ V YL R +CQ H+M ES Subject 8027 AHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCQSGLTSGSYQHQSSDVLYLWPHQIARFQLCQIHQMHES 8359
Asian prunus virus 3 isolate Nanjing, complete genome
Range 1: 8222 to 8419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 39/66(59%) | 0/66(0%) | Plus/Plus |
Query 151 LNRSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA 348 + R EIA +I++ TT+RRFC +YAKIVWNI L T IPP+ W K+G+ EN KFAAFDFF+ V++ +A Subject 8222 VTRMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKRGYKENTKFAAFDFFVHVSNNAA 8419
Range 2: 8105 to 8212 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 14/36(39%) | 0/36(0%) | Plus/Plus |
Query 37 SGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPF 144 +G+ + D DIAR+C+D GSS+ + IG S + Subject 8105 AGVPKKDLTFAMWDIARYCADAGSSESTEFIGTSSY 8212
Range 3: 8227 to 8403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 34/59(58%) | 0/59(0%) | Minus/Minus |
Query 156 TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDL 332 T KKSKAANF FSL P GGI V+ +FHTI A* QNLR VV L+ AIS L Subject 8227 TCTKKSKAANFVFSL*PLFIHPDGGILVTSMMFHTILA*NPQNLRSVVCFLMTAAISIL 8403
Asian prunus virus 2 isolate Bungo Q-1256-01, complete genome
Range 1: 8162 to 8359 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
100.0 bits(212) | 0.0 | 37/66(56%) | 0/66(0%) | Plus/Plus |
Query 151 LNRSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA 348 + R EIA +I++ TT+RR+C +YAKIVWNI L T IPP+ W KKG+ +N KF+AFDFF V++ +A Subject 8162 VTRMEIASVIKKHTTLRRYCGFYAKIVWNIMLSTNIPPSGWVKKGYKKNTKFSAFDFFEQVSNNAA 8359
Range 2: 8045 to 8152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 15/36(42%) | 0/36(0%) | Plus/Plus |
Query 37 SGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPF 144 +G+ ES DIAR+C+D GSS + IG S + Subject 8045 AGVPESTLTFSMWDIARYCADAGSSASTEFIGTSSY 8152
Range 3: 8167 to 8343 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 29/59(49%) | 0/59(0%) | Minus/Minus |
Query 156 TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDL 332 T KKS A NF F L PF GG+ V +F TIFA* Q VV LI AIS L Subject 8167 TCSKKSNAENFVFFL*PFFTHPEGGMLVDSIMFQTIFA*KPQYRLRVVCFLITEAISIL 8343
Range 1: 8207 to 8398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 40/64(62%) | 0/64(0%) | Plus/Plus |
Query 157 RSEIAGIIREVTTMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA 348 R EIA +I++ TT+RRFC +YAKIVWNI L T IPP+ W KKG+ EN KFAAFDFF+ V++ +A Subject 8207 RMEIAAVIKKHTTLRRFCGFYAKIVWNIMLVTNIPPSGWMKKGYKENTKFAAFDFFVHVSNNAA 8398
Range 2: 8084 to 8191 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 13/36(36%) | 0/36(0%) | Plus/Plus |
Query 37 SGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPF 144 +G+ D DIAR+C+D GSS+ + +G S + Subject 8084 AGVPTKDITFAMWDIARYCADAGSSESTEFVGTSSY 8191
Range 3: 8206 to 8382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 33/59(56%) | 0/59(0%) | Minus/Minus |
Query 156 TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAISDL 332 T KKSKAANF FSL PF GG+ V+ +F TI A* QNL VV LI AIS L Subject 8206 TCTKKSKAANFVFSL*PFFIHPEGGMFVTSMMFQTILA*KPQNLLSVVCFLITAAISIL 8382
Range 1: 8549 to 8704 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 30/52(58%) | 0/52(0%) | Plus/Plus |
Query 193 TMRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESA 348 T+R+FC YYAK+VWN+ LET PPA W+ KG+ + K+AAFDFF GV +A Subject 8549 TLRQFCAYYAKMVWNLMLETQTPPAIWSSKGYRDENKYAAFDFFYGVDSSAA 8704
Range 2: 8357 to 8533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 25/59(42%) | 0/59(0%) | Plus/Plus |
Query 7 IDELIRAFGESGISESDQFNVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIR 183 I ++ F + G+S V + IARHC+DVGSS +S LIG P D+ E+A II+ Subject 8357 ISQIGLEFTKIGLSSDQLTEVGVFIARHCADVGSSNQSRLIGTFPGSDVELEELATIIK 8533
Range 3: 8518 to 8688 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 27/57(47%) | 0/57(0%) | Minus/Minus |
Query 162 TPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRMVVTSLIIPAIS 332 TP KKSKAA SL P L Q+AGG+ VS F TI A* QN R V ++++ ++ Subject 8518 TP*KKSKAAYLFSSL*PLLDQMAGGVCVSSMRFQTILA**AQNCRKVQPAVLLMIVA 8688
Nucleotide Sequence (1353 letters)
Query ID: | ds2016-132_1 |
Query definition: | No definition line |
Query length: | 1368 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1008.7 | 3170.8 | 33% | 0 | 37% | NC_001948 | |
263.6 | 580.5 | 31% | 5.543e-108 | 34% | NC_018714 | |
195.3 | 701.7 | 19% | 3.646e-94 | 31% | NC_009892 | |
200.4 | 596.7 | 17% | 1.76e-106 | 38% | NC_014821 | |
195.8 | 662.6 | 17% | 1.059e-104 | 32% | NC_003462 |
Alignments
Rupestris stem pitting associated virus-1, complete genome
Range 1: 3311 to 4660 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1008.7 bits(2195) | 0.0 | 415/450(92%) | 0/450(0%) | Minus/Plus |
Query 3 VGFLLSTDGLALKAGIRSFVESESPVDPALSSPTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI 1352 VGFLLSTDGLALKAGIRSFVESE V P LS+P I KQL ENAYAENEMIALFC+RHHVR I+ITPEYEVSWKFGE EWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCD+NGEIEVINP G+ISALFDITNEHIRHVEKIG+GPQSIKVDELRKVKRSALD LS+NGSKITYFPSFERAEKLQGCLLGGLTGVISDEKF+D+KPWL+G+ST+DIK RELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKV KAG+SKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGK+YRYN+ESRRFVNPMF+SRLPC+FKKGSMTAAFADYAI Subject 3311 VGFLLSTDGLALKAGIRSFVESERLVSPDLSAPAISKQLEENAYAENEMIALFCIRHHVRPIVITPEYEVSWKFGEGEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDINGEIEVINPCGKISALFDITNEHIRHVEKIGNGPQSIKVDELRKVKRSALDFLSMNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFSDAKPWLSGISTTDIKPRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGRSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKTYRYNIESRRFVNPMFESRLPCHFKKGSMTAAFADYAI 4660
Range 2: 3310 to 4662 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
714.5 bits(1553) | 0.0 | 351/451(78%) | 0/451(0%) | Plus/Minus |
Query 1 KMA*SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHXXXXXXXXXXEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSLCLMSEVDTPASQGFESLNFSSLITPVRPPNKHP*SFSALSKLGKYVIFDPFRESRSRADRLTFRSSSTFIL*GPLPIFSTCLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTSYSGVIMISLTWCLTQNKXXXXXXXXXXXPSCFRMVGLERAGSTGDSLSTNDLIPAFKAKPSVLRRKPT 1353 K+A*SAKAAV+EPFLK G+L+SNIGFTNL LS LYLY PSS+L++SLCSAPKIA SF ESYVL* GSPA EMKASLRI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA TL SSISRS LIEFA+ARLGET VTN PSDLFMKLLY+KLFPAPNVPSTTVNSL L+S VD P SQGF SLNFSSLITPVRPP+KHP +FSA SKLGK VI DPF E +SRADRLTFR+SSTF+L*GPLPIFSTCLMCS VMSN A++ P GLITSISP SHLAQMSKASKASAKYI+ RPPP* SSSK+*LVLGLH+* +TSTSRLPSA+AMAVIMQP GA G K*FD + +IPHRGHS SPNFQLTSYSGVI I LTWC QN AIISFSA*AFS +C + G ER+G T SLST D IPAF+A PSVL +KPT Subject 3310 KIA*SAKAAVIEPFLK*HGSLDSNIGFTNLLLSMLYLYVLPSSSLSMSLCSAPKIARSFCESYVL*HGSPASEMKASLRIISKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFMKLLYKKLFPAPNVPSTTVNSLGLISVVDIPESQGFASLNFSSLITPVRPPSKHPCNFSARSKLGK*VILDPFIERKSRADRLTFRNSSTFML*GPLPIFSTCLMCSLVMSNNAEILPHGLITSISPFISHLAQMSKASKASAKYIMLRPPP*QSSSKI*LVLGLHR*FNTSTSRLPSAEAMAVIMQPFSGAHGWK*FDLRQRIPHRGHSPSPNFQLTSYSGVITIGLTWCRMQNNAIISFSA*AFSSNCLEIAGAERSGLTKRSLSTKDRIPAFRASPSVLSKKPT 4662
Range 3: 3311 to 4255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
309.9 bits(670) | 0.0 | 147/315(47%) | 0/315(0%) | Plus/Minus |
Query 408 IHF*VPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSSKCTKHNCQFSLLDVRS*HSSKPRL*IVKFLITYHASQTSQQAPLKFFRPFKTWKICYL*PVQRKQVKS*SFNFSQLIHLYTLRPATNLLDMPNVFIRYVKQSRYAPAWINNLNLAIDITFGADVESLKSFCQIHHIQTPPLT*LFKDVIGAWPT*VIEHVHLTPSKC*CNGCNHATIKRGTRLKMI*L*TQNST*RPLIFPKLPAHLIFRCYNDQSHMVPNAE*GNHFIFCISIFTKLLPYGWARKSWINW*FTFHERPYSCLQSQTVGAEKKAN 1352 IHF + FD*IC*S +K Y+F+ R HE LV ETL S KCTKH+ QF L++ S ++ KPR I + LITY+AS Q L+ F P K W++ Y P+ K+++ S + Q IH Y LR T L+MP V I YVKQ R IN+ NL+I ITF A+V+ LKSF IHH++ P LT L K++I A T +I H++ TPSKC* NGC+HATI+ G L++I* +NST* PL FP+ P + IF C + + ++VPNAE* +H I ISI +L W K W T HER + L +++ A+ K N Subject 3311 IHFKIIFD*IC*STSGRNKGYEFTLRPFHETLVQETLPSPKCTKHDSQFPWLNISSRYTRKPRFCITELLITYNAS*AP*QTSLQLFSPLKAWEVGYFRPIH*KEIEGGSLDLPQFIHFYALRAITYFLNMPYVLISYVKQCRNFTTRINHFNLSIYITFSANVKGLKSFS*IHHVKAPSLTKLLKNMISAGSTQII*HINFTPSKC*SNGCDHATIQWGAWLEVI*FKAKNST*GPLTFPEFPTNFIFWCDHYRPYVVPNAE*CDHLILGISILFQLFRNCWG*KIWTYQALTLHERSNTGL*GKSISAK*KTN 4255
Range 4: 4301 to 4654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.8 bits(314) | 0.0 | 64/118(54%) | 0/118(0%) | Plus/Minus |
Query 9 VISKSGSHGALFEVTG*S*IKHRIYKPPALQVVPI*LSFKQPQYIALFSTQNSSIFLRIICALTRVTSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPEEDFKGNDIP 362 +IS+SGSH ALFEVT S* +H ++KPPA V+PI + KQ +Y+ L S QN I LR+ICALT +TSK +ES+T NK+ *IDV+RR+ L+ IK+H + SL +CNF +E+ K IP Subject 4301 IISESGSHRALFEVTWQS*FEHWVHKPPAFYVIPIRFALKQSKYVTLLSAQNCPILLRVICALTWITSK*NESITTYNKQA*IDVSRRKQLDLIKNHTVASLQSCNFSKENLKSYYIP 4654
Range 5: 3346 to 4239 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.3 bits(540) | 0.0 | 136/298(46%) | 0/298(0%) | Minus/Plus |
Query 424 EGRNKVVRGK*ITS*SSSFEPNHTEATW*KCLCRK*NDCLILR*APCETDHYNTGI*GELEVWGK*VASMWNFVFKVKSFSTLCPS*WLHDYSHCISTWKA*GGRAQLLM*AKHQSHL*RAMSRGGSEYDVFGRSF*GFRHLRQM*CQWRD*GY*SRRAHICSV*HNE*TH*ACREDW*RASKYKGG*AAKS*TISS*PAFSERVKDNIFSKF*KGGKTSGVLVGRSDWRDK**EI*RFKALACWSVNF*HQAKRIDSCAWYIWSWKEFPIQELHEEI*RKICNICLT*AGSSKFNQK 1317 +GR + RG+* S SF P++ +CLCR+*+D +IL AP + +T I* LE+ G+*VA MWN + +KS T+ P+ WLHD+SHC STWKA* +L +* +H S+ * A+S G +DVF SF*G HLR M* +WRD* *S + C V*HN * H AC E+ * S++K G* A+ I F+E V +N+ K * G K + + +WR K**E+ K LA W + +*+ AK ID AWYIW W+EF +QE HE++* I N+C + SKFNQK Subject 3346 KGRYSIFRGE*ALGKSRSFSPSNF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNSLP*IKSLPTMRPTEWLHDHSHCFSTWKA*S*CVKLSV*TQH*SYF*GALSGRGP*HDVFS*SF*GL*HLR*M*YKWRD*SD*SVW*NFCIV*HN**AHKAC*ENR*WPSEHKSG*IAEGQAIRPRFPFNEWV*NNLLPKL*AG*KVARMFARGPNWRYK**EVQ*CKTLAFWYIYY*Y*AKGIDCRAWYIWGWEEFLVQEFHEKV*G*IRNLCFSQTCFSKFNQK 4239
Range 6: 4306 to 4653 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 54/116(47%) | 0/116(0%) | Minus/Plus |
Query 10 CRYL*SLPQESYRPKGWSLRDL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*PLSKHI*FSKR*SYFGC*TERYIEVA*RKVI*VQLGEPEVCKSDV*FKITL*LQKGLHDCRFC*L 357 C * P +S R +GW L D ** + SW+HRSM + Y+ * FH +CW* +SKHI* +K FG * E + A* + +*V + EVC+ +V K + LQKGL DCRF *L Subject 4306 CSNF*GFP*KSCRIEGWPLCDF**GPVVSSWIHRSMLAYYT**CFHFTCW*SMSKHI*LAKGSGNFGR*AE*HT*TA*GQNV*V*HRKQEVCEPNVRIKTAMSLQKGLDDCRFR*L 4653
Range 7: 3504 to 4256 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 120/251(48%) | 0/251(0%) | Plus/Minus |
Query 407 HPFLGPF*LNLLEPA*VRQMLQIFLQIXXXXXCIGNSFQLQMYQAQLSILFA*CQKLTLQQAKALNR*ISHHLSRQSDLPTSTPEVFPPFQNLENMLSLTRSEKAGQELIV*LFAAHPPLYFEARYQSSRHA*CVHSLCQTEQICARLD**PQSRH*HHIWRRCRKPQKLLPNTSYSDPPLDIALQRCDWCLAYISN*ARPPHAFQVLMQWL*SCNH*EGHKVENDLTLNTKFHIEATHFPQTSSSPHIPV 1159 HPF F*LNLL+ +Q L+I+ Q S*+SC NS Q QMYQA+ SI A* Q Q+AK L+ * SHHL RQ + F P Q+L + L T S K + I * A HP L E Y S+HA C H LCQT Q D* QS H +HI R+C++PQKL NTS P D A Q+ D C Y N HAFQVL QWL*SCNH G V +DL +FHI ATH P+ S+ HI V Subject 3504 HPFQDHF*LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQMYQARQSIPLA*YQ**IYQKAKVLHH*TSHHL*RQLGPLANILATFQPAQSLGSRLF*THSLKGNRGRIA*PSAIHPLLCSEGHYLFSQHALCAH*LCQTMQKFYHTD*SLQSLHLYHI*RKCQRPQKLQLNTSC*GPLPDKAPQKYD*CWVYTDNLTHQLHAFQVLKQWL*SCNHSVGRMVGSDLI*GKEFHIGATHLPRISN*LHILV 4256
Range 8: 4350 to 4652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
89.0 bits(188) | 0.0 | 48/101(48%) | 0/101(0%) | Plus/Minus |
Query 11 NQQKRQSWSPF*SYRVILNQTSDLQTSGSPSCTYMTFLQATSIYRSVQHPK*LYLFENHMCFDKGHQQER*KRHCE*QEDIDRCNQEGIAELHQRSRNDQP 313 NQ+KRQS SPF*S +L +T QTS TY QA + S Q PK F +HMCFD HQQ +*K H * IDRC QE HQ+S + QP Subject 4350 NQRKRQSSSPF*SDMAVLIRTLGSQTSCFLCYTYTFCPQAV*VCHSAQRPKLPDPFASHMCFDMDHQQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQP 4652
Range 9: 3312 to 3482 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 21/57(37%) | 0/57(0%) | Plus/Minus |
Query 1181 GA*RRIRQSFHFLHKHFHQVASVWLGSKELDQLVIHFPRTTLFLPSKPNRRC*EESQ 1351 GA RI +S H HKH + LG K+LD H PR + P +C* ++Q Subject 3312 GAECRIMRSSHSRHKHSLPIV*KLLGLKDLDLPSAHSPRKIEYRPLGQVHQC*VKNQ 3482
Range 10: 3504 to 4190 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 111/229(48%) | 0/229(0%) | Minus/Plus |
Query 473 HRNMR*AGSLGKMSGLYVEFCV*SQIIFNLVPLLMVA*LQPLHQHLEGVRWTCSITYVGQAPITSLKSYVKGGV*I*CIWQKLLRLSTSAPNVMSMARLRLLIQAGAYLLCLT*RMNTLGMSRRLVAGLKV*RWMSCEKLNDQLLTCFL*TGQR*HIFQVLKGRKNFRGACWEV*LA**VMRNLTIQSLGLLECQLLTSSKEN*QLCLVHLELERVSYTRAS*RDLKEN 1159 H+NM+ G+ GK+SG YVEF +QI N P MVA* QPL QHLEGV+ C I V A I L+S+V+ G *CI KLLR T A NV+ M RL+ LI+ +L CLT* M+T GM R+ V L+ *+WM+C + +D F * G +* Q L G K+ + C *LA *VMR+ +Q+LG L LL S+ N* CLVHL L RVS TR S*+ L+ N Subject 3504 HQNMKLVGNSGKVSGPYVEFFALNQITSNHAPH*MVA*SQPLLQHLEGVKLMC*IICVDPALIIFLRSFVREGALT*CI*LKLLRPLTFALNVI*MERLK*LIRVVKFLHCLT*LMST*GMLRK*VMALRA*KWMNCGRSSDPPSISFQ*MGLK*PTSQALSGLKSCKDVC*GA*LAL*VMRSSVMQNLGFLVYLLLILSQGN*LSCLVHLGLGRVSCTRVS*KGLRVN 4190
Range 11: 4467 to 4652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 36/62(58%) | 0/62(0%) | Minus/Plus |
Query 11 KAHMILKKIELFWVLNRAIY*GCLKESHIGTTWRAGGL*IRCLIQDYPVTSKRAP*LPLLLI 196 KAHM K+I FW L+R Y CL+ IG T +AGGL* +C QD VTSKRA *LPL LI Subject 4467 KAHMTRKRIGQFWALSRVTYLDCLRAKRIGIT*KAGGL*TQCSNQDCHVTSKRAR*LPLSLI 4652
Range 12: 4224 to 4412 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 31/63(49%) | 0/63(0%) | Minus/Plus |
Query 251 QIQSKGT*KWMKSVXXXXXXXXXXRAGMSLPLKSSSGKLQA*RLVIA*SLMKFSYSLLVTSIY 439 QIQSK KWM + + ++ QRR+ GM L+ S KLQ *RL * LM+ S LL TSIY Subject 4224 QIQSKMILKWMIAAKLLKQVGQRRKGGM**LLRFSLEKLQD*RLATV*FLMRSSCFLLDTSIY 4412
Apple green crinkle associated virus complete genome, genomic RNA, isolate Aurora-1
Range 1: 3460 to 4299 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
263.6 bits(569) | 0.0 | 117/280(42%) | 0/280(0%) | Minus/Plus |
Query 417 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 1256 P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L G TGV+ K A + + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 3460 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLVCQDNHFKPCMPVNGCVIRAIASALSRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEIDYRPSIDRASTLLDSFELGATGVLCQGIKEAQKGLAAKLVPESVHDRKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4299
Range 2: 4360 to 4713 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
150.0 bits(321) | 0.0 | 59/118(50%) | 0/118(0%) | Minus/Plus |
Query 3 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI 356 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L + I +AGDPCQS YDS DR I +SDI+R L G+SY++N+ S+RF NP+F RLPCN K +T +Y + Subject 4360 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLNLKVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRTLSGRSYKFNILSQRFRNPIFYGRLPCNLNKTRLTLDEEEYTL 4713
Range 3: 3567 to 3917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 40/117(34%) | 0/117(0%) | Plus/Minus |
Query 799 CLMCSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS 1149 C CSF N A + P L SP S L Q+ S + + I +P P +SSK GL TSTS SA+A+A++ PL G QG K ++ + S N Q+ S Subject 3567 CARCSFSKENSAGILPFSLTIINSPPVSTLPQIENISNSLVRSKILKPLPSATSSKRSS*AGLPNTAKTSTSLRLSAEAIALMTHPLTGMQGLKWLSWQTSVAALSTS*GLNIQVHS 3917
Range 4: 4164 to 4265 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 18/34(53%) | 0/34(0%) | Plus/Minus |
Query 451 LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVN 552 LG+T V FP D M L R+LFP PNVP +N Subject 4164 LGDTKVIAFPGDFSMNFLKRELFPHPNVPKIIIN 4265
Range 5: 4503 to 4703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 28/67(42%) | 0/67(0%) | Plus/Minus |
Query 13 SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPA 213 S+ + V KLQG+L IGF NL L L L P L +SL KI S S L GSPA Subject 4503 SSSSRVNRVLFKLQGSLP*KIGFLNL*LKMLNL*LRPLRVLMMSLSLPAKICRSELLS*SLWHGSPA 4703
Range 1: 3326 to 4030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.3 bits(420) | 0.0 | 84/235(36%) | 0/235(0%) | Minus/Plus |
Query 540 KQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVISDEKFNDSKPWLAGVSTSDIKQRELTVV 1244 +Q+ + +AE E +A FC + ++L +++ V+W F + L + NHF PC P+NGC++ AIASALGRRE+DVL L +P ++E+ C G G + L FE F I A+ D G + +N G+ISA F + EH+ H++++ S + +L V +SAL LL +NGS+I+Y PS +RA+ L L G TGV+ E +N + + G+ + +++ T++ Subject 3326 RQMSGDTWAEREAVAFFCSEYSIQLHVLSISEGVTWIFKPAKVVKSSTLKCQDNHFMPCLPVNGCVVRAIASALGRREIDVLAVLGKPEHRDLYEDACSGNGFCVYDLERLFEIFSIRARLDHQGSLICLNEDGKISAEFSLEKEHLIHLKELSLKKFSPVISDLHTVSKSALKLLMINGSEISYSPSMDRAQTLANSLHAGTTGVMCAETYNSRRHIMDGLEANIAERKLCTII 4030
Range 2: 4208 to 4561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 62/118(53%) | 0/118(0%) | Minus/Plus |
Query 3 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI 356 V+TFE+FL + +K GH VI DE+QLFPPGY+DL L+ SD + LAGDPCQS YDS+ DR + SDI+ +L GKSYRYN+ S+RF NP+F SRLPC+ +T +Y + Subject 4208 VLTFELFLMGIASIKKGHTVIIDEIQLFPPGYLDLILVCTSSDINLVLAGDPCQSDYDSKDDRHLFANSDSDIIHILNGKSYRYNILSQRFRNPVFSSRLPCSICPKRLTMDEEEYTL 4561
Range 3: 4030 to 4107 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 13/26(50%) | 0/26(0%) | Minus/Plus |
Query 460 WYIWSWKEFPIQELHEEI*RKICNIC 537 WY+W W E I E+H +I RK N C Subject 4030 WYLWMW*EHSI*EVHIKITRKSYNFC 4107
Range 4: 3995 to 4198 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 32/68(47%) | 0/68(0%) | Minus/Plus |
Query 369 SDIKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKK 572 ++I +R+L ++GTFG GKS L+K F+ +S GK +TFVSPRR+LA+ IK D+ + K + GK K Subject 3995 ANIAERKLCTIIGTFGCGKSTLFKKFISKSPGKAITFVSPRRSLADEIKCDIGLTGANKKIGKGKDLK 4198
Range 5: 4267 to 4371 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 17/35(49%) | 0/35(0%) | Minus/Plus |
Query 193 DL**SSAIPSWLHRSMSSCYSQ*RFHLSCW*PLSK 297 D ** SA+PSWL S S + * SCW L K Subject 4267 DH**DSALPSWLS*SHSGLH*L*HQPCSCWRSLPK 4371
Range 6: 4214 to 4495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 29/94(31%) | 0/94(0%) | Plus/Minus |
Query 69 KHRIYKPPALQVVPI*LSFKQPQYIALFSTQNSSIFLRIICALTRVTSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPEEDFKG 350 K RI KP +VP+ L+ + + + + +I L I+ L ++SK V A+ + I +TRRE LN I DH + L ++ KG Subject 4214 KDRIPKPLTQYIVPVALTIQNVDDVRIRIGKKVTIILAIVVTLAGISSKNKVDVRASADQNEIKITRREELNLINDHRVPLLNGSYSHKKQLKG 4495
Range 7: 3466 to 3633 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 24/56(43%) | 0/56(0%) | Plus/Minus |
Query 937 RPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKI 1104 +P P +SS L GL K TS S LP ADA+A+ QPL G G K* + ++ Subject 3466 KPFPEQASS*RSLCSGLPKTARTSISLLPRADAIALTTQPLTGRHGIK*LSWHLRV 3633
Range 8: 4030 to 4128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.1 bits(79) | 0.0 | 18/33(55%) | 0/33(0%) | Plus/Minus |
Query 439 ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVP 537 AR LGET V FP D M L R L P P VP Subject 4030 ARDLLGETKVIAFPGDFDMNFLNRVLLPHPKVP 4128
Range 9: 4207 to 4365 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 26/53(49%) | 0/53(0%) | Plus/Minus |
Query 199 QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT 357 QGSPAR S + R RS *PGG S* SS IT P +R +SKV+T Subject 4207 QGSPARTRLMSELVQTRMRSR*PGGKS*ISSMITVCPFLMEAIPIRNSSKVST 4365
Range 1: 3463 to 4095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 86/211(41%) | 0/211(0%) | Minus/Plus |
Query 624 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 1256 P + KQL N +AE E +A FC + ++L ++ E +W F +E L + NHF+PC P+NGC+I AIASAL RREVDVL L +P+ +F+E+ +G G ++ L+ FE F IC D GE+ ++N GGRI A F + EH+ H+ + S V +L +V SA+ L++NG++I Y PS +RA L L G TGV+ Subject 3463 PRLSKQLENNVWAEREAVAYFCSHYGIKLNVLYAREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAIASALNRREVDVLAVLGKPAHEDLFDEVSEGRGFSIFDLSRLFEIFSICGSVDTGGELIMVNEGGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAMNGAEIDYRPSIDRASTLLDSLELGATGVL 4095
Range 2: 4363 to 4716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.2 bits(328) | 0.0 | 58/118(49%) | 0/118(0%) | Minus/Plus |
Query 3 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI 356 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YDS DR I +SDI+R+L G++Y++N+ S+RF NP+F RLPCN K +T +Y + Subject 4363 VKTFELFVLHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKQNVNIIIAGDPCQSDYDSSSDRHIFAGSESDIMRILSGRTYKFNILSQRFRNPVFVGRLPCNLNKSRLTLDEEEYTL 4716
Range 3: 4153 to 4302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 417 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 566 + R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4153 VHDRKLVMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINNDL 4302
Range 4: 3570 to 3911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 43/114(38%) | 0/114(0%) | Plus/Minus |
Query 808 CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K*FDFKHKIPHRGHSFSPNFQLTS 1149 CSF N A + PP L SP S L Q+ K SK+ + I +P P +SS GL + TSTS A+AMA++ QP G QG K* + K+ S N Q+ S Subject 3570 CSFSKENSAGILPPSLTMINSPPVSTLPQIEKISKSLERSKILKPRPSETSSNKSSCAGLPRTAKTSTSLRFKAEAMALMTQPFTGMQGLK*LS*QIKVAALSTSCGLNIQVHS 3911
Range 5: 4161 to 4280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 20/40(50%) | 0/40(0%) | Plus/Minus |
Query 439 ARARLGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 558 AR LGET V FP D M L R+L P P VP N L Subject 4161 ARDLLGETKVIAFPGDFSMNFLKRELLPQPKVPRIITNFL 4280
Range 6: 4506 to 4706 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 28/67(42%) | 0/67(0%) | Plus/Minus |
Query 13 SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPA 213 S+ + V KL G+L + GF N L L L P + L +SL KI LS S L*QGSPA Subject 4506 SSSSRVSRDLFKLHGSLPTKTGFLNR*LRMLNL*VLPLNILIMSLSLPAKICLSELLS*SL*QGSPA 4706
Apple stem pitting virus genes for RNA-dependent RNA polymerase, triple gene block ORFs and coat protein, complete cds
Range 1: 3459 to 4091 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
195.8 bits(421) | 0.0 | 84/211(40%) | 0/211(0%) | Minus/Plus |
Query 624 PTIRKQLGENAYAENEMIALFCVRHHVRLIIITPEYEVSWKFGENEWPLCGILCLKSNHFQPCAPLNGCMITAIASALGRREVDVLNYLCRPSTNHIFEELCQGGGLNMMYLAEAFEAFDICAKCDVNGEIEVINPGGRISALFDITNEHIRHVEKIGSGPQSIKVDELRKVKRSALDLLSLNGSKITYFPSFERAEKLQGCLLGGLTGVI 1256 P + KQL N +AE E +A FC + +RL ++ E +W F +E L + NHF+PC P+NGC+I AI+SAL RREVDVL L +P+ +FEE+ +G G ++ L FE F IC D GE+ ++N GRI A F + EH+ H+ + S V +L +V SA+ L++NG+++ Y PS +RA L G TGV+ Subject 3459 PRLSKQLEGNTWAEREAVAYFCSHYGIRLNVLYTREECTWIFKPHEVLKAATLICQDNHFKPCMPVNGCVIRAISSALNRREVDVLAVLGKPAHEDLFEEVAEGRGFSIFDLTRLFEIFSICGSVDTGGELIMVNENGRIPAEFSLEKEHLAHIPTLSRRKFSPIVSDLNRVSNSAMRFLAINGAEVDYRPSIDRASTLLDSFEIGATGVL 4091
Range 2: 4359 to 4712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 58/118(49%) | 0/118(0%) | Minus/Plus |
Query 3 VVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYDSQKDRAILGAEQSDILRLLEGKSYRYNLESRRFVNPMFDSRLPCNFKKGSMTAAFADYAI 356 V TFE+F+ + +K GH V+ DE+QLFPPGYIDL +L ++ + I +AGDPCQS YD DR I +SDI+R+L G+SY++N+ S+RF NP+F RLPCN K +T +Y + Subject 4359 VKTFELFILHLDSIKEGHTVVIDEIQLFPPGYIDLIILGLKPNVNIIIAGDPCQSDYDCSSDRHIFAGSESDIMRILSGRSYKFNILSQRFRNPVFYGRLPCNLNKTRLTLDEEEYTL 4712
Range 3: 4149 to 4298 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.8 bits(157) | 0.0 | 29/50(58%) | 0/50(0%) | Minus/Plus |
Query 417 IKQRELTVVLGTFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDL 566 + +R+L ++LGTFG GKS L+K F+++S GK +TFVSPRR+LA SI DL Subject 4149 VHERKLIMILGTFGCGKSSLFKKFIEKSPGKAITFVSPRRSLAESINHDL 4298
Range 4: 4502 to 4702 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 32/67(48%) | 0/67(0%) | Plus/Minus |
Query 13 SAKAAVMEPFLKLQGNLESNIGFTNLRLSKLYLYDFPSSNLNISLCSAPKIALSF*ESYVL*QGSPA 213 S+ + V L+LQGNL N GF NL L L L P L ISL K+ LS +S L*QGSPA Subject 4502 SSSSRVNRVLLRLQGNLP*NTGFRNL*LKILNL*LRPLRILMISLSLPAKMCLSELQS*SL*QGSPA 4702
Range 5: 3632 to 3907 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 35/92(38%) | 0/92(0%) | Plus/Minus |
Query 808 CSFVMSNRADMRPPGLITSISPLTSHLAQMXXXXXXXXXYIIFRPPP*HSSSKM*LVLGLHK*LSTSTSRLPSADAMAVIMQPLRGAQG*K* 1083 CSF N A + P L SP S L Q+ K S + + +P P +SSK GL TSTS SA+ +A+I P G QG K* Subject 3632 CSFSKENSAGILPFSLTMINSPPVSTLPQIEKISNNLVRSKMLKPLPSATSSKRSS*AGLPSTAKTSTSLRLSAEEIALITHPFTGMQGLK* 3907
Range 6: 4157 to 4264 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 18/36(50%) | 0/36(0%) | Plus/Minus |
Query 451 LGETNVTNFPSDLFMKLLYRKLFPAPNVPSTTVNSL 558 LGET V FP D M L ++LFP PNVP ++ L Subject 4157 LGETKVMAFPGDFSMNFLNKELFPHPNVPRIIISFL 4264
Range 7: 4358 to 4462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 16/35(46%) | 0/35(0%) | Plus/Minus |
Query 253 RSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTT 357 +S+*PGG S* SS T *P+ SKV T Subject 4358 KSI*PGGKS*ISSITTV*PSLMLSR*RMNNSKVLT 4462
Range 8: 4149 to 4268 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 21/40(52%) | 0/40(0%) | Plus/Minus |
Query 447 PPR*DKCYKFSFRSLHEALV*ETLSSSKCTKHNCQFSLLD 566 PP *DK Y FS L+E L * TLS+S+ +K++ QF L+D Subject 4149 PPW*DKSYGFSRGLLNELLE*GTLSASERSKNHYQFPLMD 4268
Range 9: 4359 to 4574 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 23/72(32%) | 0/72(0%) | Plus/Minus |
Query 141 IALFSTQNSSIFLRIICALTRVTSKRDESVTANNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPEEDFKGND 356 I ++++ I +I LTRVTS + + K I + R+ LNFI +++T L A +E FK D Subject 4359 ITFTTSKDVPI*AAVIITLTRVTSYYNIDIRL*PKNYQIYIAWRKELNFIDHNSVTLLDAIKMKDEQFKSFD 4574