Queries
Nucleotide Sequence (640 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
439.1 | 2246.9 | 33% | 2.598e-121 | 94% | AB277785.1 | |
439.1 | 2277.1 | 33% | 2.598e-121 | 95% | JX513892.1 | |
439.1 | 2278.5 | 33% | 2.598e-121 | 93% | JQ922417.1 | |
438.7 | 2266.1 | 33% | 3.569e-121 | 94% | HE591388.1 | |
437.7 | 2235.4 | 30% | 6.737e-121 | 94% | AF057136.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hiz3
Sequence ID: AB277785.1 Length: 2876 Number of Matches: 8
Range 1: 581 to 1141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
439.1 bits(952) | 0.0 | 184/187(98%) | 0/187(0%) | Plus/Plus |
Query 79 VGERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 + ERICIAREMGNLE CIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 581 IWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 1141
Range 2: 581 to 1141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.5 bits(872) | 0.0 | 175/187(94%) | 0/187(0%) | Minus/Minus |
Query 79 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEVFILGN*LPYXXXXXXXXXTMNDYWKFKHTENSYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPLPD 639 LVWVRE HIKT*KILDGQVLIKYIHF WHCTPWRIRLNVPSCEIRAVWNTCCESYE+ ILGN LPY* TFTTTRHTMNDYWKFKHTEN+YKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIM LHF LGHHFNG*LSQPV IG+LYRIIVNT LQVTHLPSNAYPLPD Subject 581 LVWVRE*HIKT*KILDGQVLIKYIHFTWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGNQLPY*ATFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMGLHFLLGHHFNG*LSQPVCIGDLYRIIVNTILQVTHLPSNAYPLPD 1141
Range 3: 579 to 1142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
381.8 bits(827) | 0.0 | 176/188(94%) | 0/188(0%) | Minus/Minus |
Query 77 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*SFHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KXXXXXXXXXXXLNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNEPPLLPRSSFQWIALPAGTHRKPLSHNCQYISPGYPSP*QCISAPRL 640 FGMGPR AHQNLKNLGRTSTHQVYSL LALHTLENKA*CTFL*D*GCLEHLL*KL*+ HPRK APLL+YFYHYQAHYE*LLEI*AH*K LQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYN PPL PRSSFQWIALPAG HR+PLSHNCQY SPGYPSP*QCISAPRL Subject 579 FGMGPRIAHQNLKNLGRTSTHQVYSLYLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKSAPLLSYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNGPPLPPRSSFQWIALPAGMHRRPLSHNCQYNSPGYPSP*QCISAPRL 1142
Range 4: 582 to 1142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
371.3 bits(804) | 0.0 | 176/187(94%) | 0/187(0%) | Plus/Plus |
Query 80 SGSGYALLGRWVTWRNVLTIMR*RFPMRTGWESYPLK**PRKKWRLIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*EFSVCLNFQ*SFIVCLXXXXXXXXGS*FPRMKTS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 640 SGSGYALLGRWVTWR VLTIMR*R PM TGWESYPLK**PR+KWR IIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL* FSVCLNFQ*SFIVCLVVVKV **GS*FPRM+ S*LSQQVFQTALISQEGTLSLILQGVQCQ K*IYLMSTCPSKIFQVLMC SRTHTK Subject 582 SGSGYALLGRWVTWRIVLTIMR*RSPMHTGWESYPLK**PRRKWRPIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVA**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQVK*IYLMSTCPSKIFQVLMCYSRTHTK 1142
Range 5: 586 to 1140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
306.2 bits(662) | 0.0 | 173/185(94%) | 0/185(0%) | Plus/Plus |
Query 84 GADMHC*GDG*PGEMY*QLCDRGFLCVPAGRAIH*NXXXXXXXXXXXXC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FXXXXXXXXXCRSFQCA*IXXXXXXCAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVXXXXXXXXCAVLGPIP 638 GADMHC*GDG*PGE+Y*QLCDRG LC+PAGRAIH*NDDRG SGG L*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCR FQCA*ISSSHS*CAW*W*K* NKGA+FRG*+ HSFHSRCSRQP*SHRKVH*ALFSRVCSAR SEYT**VLVRPRFFRF*CA+LGPIP Subject 586 GADMHC*GDG*PGELY*QLCDRGLLCIPAGRAIH*NDDRGGSGGPL*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*LNKGADFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSAR*SEYT**VLVRPRFFRF*CAILGPIP 1140
Range 6: 724 to 921 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Minus |
Query 222 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 419 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL Subject 724 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 921
Range 7: 970 to 1140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 56/57(98%) | 0/57(0%) | Minus/Minus |
Query 468 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 638 WYGSENSTSKPEKSWTDKYSSSIFT PGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF Subject 970 WYGSENSTSKPEKSWTDKYSSSIFTLPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 1140
Grapevine rupestris stem pitting associated virus isolate GRSPAV 1050 02 RNA dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block 1 (TGB1), triple gene block 2 (TGB2), triple gene block 3 (TGB3), coat protein (CP), and 14 kDa protein (14K) genes, complete cds
Sequence ID: JX513892.1 Length: 8716 Number of Matches: 8
Range 1: 6317 to 6877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
439.1 bits(952) | 0.0 | 184/187(98%) | 0/187(0%) | Plus/Plus |
Query 79 VGERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 + ERICIAREMGNLE CIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6317 IWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6877
Range 2: 6317 to 6877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
412.1 bits(893) | 0.0 | 178/187(95%) | 0/187(0%) | Minus/Minus |
Query 79 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEVFILGN*LPYXXXXXXXXXTMNDYWKFKHTENSYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPLPD 639 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYE+ ILGN*LPY*TTFTTTRHTMNDYWKFKHTEN+YKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTI+M LHFFLGHHFNG*LSQPV IG+LY IIVNT LQVTHLPSNAYPLPD Subject 6317 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIVMGLHFFLGHHFNG*LSQPVCIGDLYSIIVNTILQVTHLPSNAYPLPD 6877
Range 3: 6315 to 6878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
387.8 bits(840) | 0.0 | 179/188(95%) | 0/188(0%) | Minus/Minus |
Query 77 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*SFHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KXXXXXXXXXXXLNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNEPPLLPRSSFQWIALPAGTHRKPLSHNCQYISPGYPSP*QCISAPRL 640 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAHYE*LLEI*AH*K LQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HN N PPLLPRSSFQWIALPAG HR+PL HNCQY SPGYPSP*QCISAPRL Subject 6315 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNCNGPPLLPRSSFQWIALPAGMHRRPL*HNCQYNSPGYPSP*QCISAPRL 6878
Range 4: 6318 to 6878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
376.3 bits(815) | 0.0 | 178/187(95%) | 0/187(0%) | Plus/Plus |
Query 80 SGSGYALLGRWVTWRNVLTIMR*RFPMRTGWESYPLK**PRKKWRLIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*EFSVCLNFQ*SFIVCLXXXXXXXXGS*FPRMKTS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 640 SGSGYALLGRWVTWR VLTIM *R PM TGWESYPLK**PRKKWR I IVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL* FSVCLNFQ*SFIVCLVVVKVV**GS*FPRM+ S*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK Subject 6318 SGSGYALLGRWVTWRIVLTIML*RSPMHTGWESYPLK**PRKKWRPITIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 6878
Range 5: 6322 to 6876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.1 bits(677) | 0.0 | 176/185(95%) | 0/185(0%) | Plus/Plus |
Query 84 GADMHC*GDG*PGEMY*QLCDRGFLCVPAGRAIH*NXXXXXXXXXXXXC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FXXXXXXXXXCRSFQCA*IXXXXXXCAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVXXXXXXXXCAVLGPIP 638 GADMHC*GDG*PGE+Y*QLC RG LC+PAGRAIH*NDDRGRSGG L LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCR FQCA*ISSSHS*CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVRPRFFRF*CAVLGPIP Subject 6322 GADMHC*GDG*PGELY*QLCYRGLLCIPAGRAIH*NDDRGRSGGPLQLC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVRPRFFRF*CAVLGPIP 6876
Range 6: 6460 to 6657 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Minus |
Query 222 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 419 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL Subject 6460 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 6657
Range 7: 6706 to 6876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 57/57(100%) | 0/57(0%) | Minus/Minus |
Query 468 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 638 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF Subject 6706 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6876
Grapevine rupestris stem pitting associated virus isolate GRSPaV GG, complete genome
Sequence ID: JQ922417.1 Length: 8758 Number of Matches: 8
Range 1: 6325 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
439.1 bits(952) | 0.0 | 184/187(98%) | 0/187(0%) | Plus/Plus |
Query 79 VGERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 + ERICIAREMGNLE CIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6325 IWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6885
Range 2: 6325 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
413.5 bits(896) | 0.0 | 179/187(96%) | 0/187(0%) | Minus/Minus |
Query 79 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEVFILGN*LPYXXXXXXXXXTMNDYWKFKHTENSYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPLPD 639 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESY++ ILGN*LPY*TTFTTTRHTMNDYWKFKHTEN+YKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIM LHFFLGHHFNG*LSQPV IG+LYRIIVNT LQVTHLPSNAYPLPD Subject 6325 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYKILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQPVCIGDLYRIIVNTILQVTHLPSNAYPLPD 6885
Range 3: 6323 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
392.8 bits(851) | 0.0 | 180/188(96%) | 0/188(0%) | Minus/Minus |
Query 77 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*SFHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KXXXXXXXXXXXLNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNEPPLLPRSSFQWIALPAGTHRKPLSHNCQYISPGYPSP*QCISAPRL 640 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAHYE*LLEI*AH*K LQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYN PPLLPRSSFQWIALPAG HR+PLSHNCQY SP YPSP*QCISAPRL Subject 6323 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWIALPAGMHRRPLSHNCQYNSPSYPSP*QCISAPRL 6886
Range 4: 6326 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
379.1 bits(821) | 0.0 | 179/187(96%) | 0/187(0%) | Plus/Plus |
Query 80 SGSGYALLGRWVTWRNVLTIMR*RFPMRTGWESYPLK**PRKKWRLIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*EFSVCLNFQ*SFIVCLXXXXXXXXGS*FPRMKTS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 640 SGSGYALLGRWVTWR VLTIMR*R PM TGWESYPLK**PRKKWR IIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL* FSVCLNFQ*SFIVCLVVVKVV**GS*FPRM+ *LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK Subject 6326 SGSGYALLGRWVTWRIVLTIMR*RSPMHTGWESYPLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIL*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 6886
Range 5: 6330 to 6884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
308.5 bits(667) | 0.0 | 176/185(95%) | 0/185(0%) | Plus/Plus |
Query 84 GADMHC*GDG*PGEMY*QLCDRGFLCVPAGRAIH*NXXXXXXXXXXXXC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FXXXXXXXXXCRSFQCA*IXXXXXXCAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVXXXXXXXXCAVLGPIP 638 GADMHC*GDG* GE+Y*QLCDRG LC+PAGRAIH*NDDRGRSGG L*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCR FQCA*ISSSHS*CAW*W*K*FNKGANFRG*+ +SFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVRPRFFRF*CAVLGPIP Subject 6330 GADMHC*GDG*LGELY*QLCDRGLLCIPAGRAIH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFYSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVRPRFFRF*CAVLGPIP 6884
Range 6: 6468 to 6665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Minus |
Query 222 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 419 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL Subject 6468 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 6665
Range 7: 6714 to 6884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.8 bits(301) | 0.0 | 56/57(98%) | 0/57(0%) | Minus/Minus |
Query 468 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 638 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKA+KF Subject 6714 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAIKF 6884
Grapevine rupestris stem pitting associated virus complete genome, isolate PG, genomic RNA
Sequence ID: HE591388.1 Length: 8725 Number of Matches: 8
Range 1: 6325 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
438.7 bits(951) | 0.0 | 183/187(98%) | 0/187(0%) | Plus/Plus |
Query 79 VGERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 + ERICIAREMGNLE CIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLS+QDFSGFDVLFSDPYQ Subject 6325 IWERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSIQDFSGFDVLFSDPYQ 6885
Range 2: 6325 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
411.6 bits(892) | 0.0 | 177/187(95%) | 0/187(0%) | Minus/Minus |
Query 79 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEVFILGN*LPYXXXXXXXXXTMNDYWKFKHTENSYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPLPD 639 LVWVREQHIKT*KILDGQVLIKY++FPWHCTPWRIRLNVPSCEIRAVWNTCCESYE+ ILGN*LPY*TTFTTTRHTMNDYWKFKHTEN+YKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTI+M LHFFLGHHFNG*LSQPV IG+LYRIIVNT LQVTHLPSNAYPLPD Subject 6325 LVWVREQHIKT*KILDGQVLIKYVYFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIVMGLHFFLGHHFNG*LSQPVCIGDLYRIIVNTILQVTHLPSNAYPLPD 6885
Range 3: 6323 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
380.9 bits(825) | 0.0 | 177/188(94%) | 0/188(0%) | Minus/Minus |
Query 77 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*SFHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KXXXXXXXXXXXLNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNEPPLLPRSSFQWIALPAGTHRKPLSHNCQYISPGYPSP*QCISAPRL 640 FGMGPRTAHQNLKNLG TSTHQV LSLALHTLENKA*CTFL*D*GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAHYE*LLEI*AH*K LQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HN N PPLLPRSSFQWIALPAG HR+PLSHNCQY SPGYPSP*QCISAPRL Subject 6323 FGMGPRTAHQNLKNLGWTSTHQVCLLSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNCNGPPLLPRSSFQWIALPAGMHRRPLSHNCQYNSPGYPSP*QCISAPRL 6886
Range 4: 6326 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
377.3 bits(817) | 0.0 | 178/187(95%) | 0/187(0%) | Plus/Plus |
Query 80 SGSGYALLGRWVTWRNVLTIMR*RFPMRTGWESYPLK**PRKKWRLIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*EFSVCLNFQ*SFIVCLXXXXXXXXGS*FPRMKTS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 640 SGSGYALLGRWVTWR VLTIMR*R PM TGWESYPLK**PRKKWR I IVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL* FSVCLNFQ*SFIVCLVVVKVV**GS*FPRM+ S*LSQQVFQTALISQEGTLSLILQGVQCQGK* YLMSTCPSKIFQVLMCCSRTHTK Subject 6326 SGSGYALLGRWVTWRIVLTIMR*RSPMHTGWESYPLK**PRKKWRPITIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGK*TYLMSTCPSKIFQVLMCCSRTHTK 6886
Range 5: 6330 to 6884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.1 bits(677) | 0.0 | 174/185(94%) | 0/185(0%) | Plus/Plus |
Query 84 GADMHC*GDG*PGEMY*QLCDRGFLCVPAGRAIH*NXXXXXXXXXXXXC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FXXXXXXXXXCRSFQCA*IXXXXXXCAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVXXXXXXXXCAVLGPIP 638 GADMHC*GDG*PGE+Y*QLCDRG LC+PAGRAIH*NDDRGRSGG L LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCR FQCA*ISSSHS*CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH*ALFSRVCSARES++T**VLV PRFFRF*CAVLGPIP Subject 6330 GADMHC*GDG*PGELY*QLCDRGLLCIPAGRAIH*NDDRGRSGGPLQLC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARESKHT**VLVHPRFFRF*CAVLGPIP 6884
Range 6: 6468 to 6665 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Minus |
Query 222 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 419 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL Subject 6468 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 6665
Range 7: 6714 to 6884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
138.5 bits(296) | 0.0 | 55/57(96%) | 0/57(0%) | Minus/Minus |
Query 468 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 638 WYGSENSTSKPEKSW DKYSSS+FTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF Subject 6714 WYGSENSTSKPEKSWMDKYSSSMFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6884
Rupestris stem pitting associated virus 1, complete genome
Sequence ID: AF057136.1 Length: 8744 Number of Matches: 8
Range 1: 6326 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
437.7 bits(949) | 0.0 | 183/187(98%) | 0/187(0%) | Plus/Plus |
Query 79 VGERICIAREMGNLEKCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 639 + ERICIAREMGNLE CIDNYAIEVSYAYRLGEL+IEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6326 IWERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6886
Range 2: 6326 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
403.4 bits(874) | 0.0 | 176/187(94%) | 0/187(0%) | Minus/Minus |
Query 79 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEVFILGN*LPYXXXXXXXXXTMNDYWKFKHTENSYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIMSLHFFLGHHFNG*LSQPVRIGNLYRIIVNTFLQVTHLPSNAYPLPD 639 LVWVREQHIKT*KILDGQVLIKYI+FPWHCTPWRIRLNVPSCEIRAVWNTCCESYE+ ILGN*LPY*TTFTTTRHTMNDYWKFKHTEN+YKLKC*QCFN*IIHNTQIMPNT*GLIN FK*A*N*ASHLMLVPDQESNTIIM LHFFLGHHFNG*LSQ V IG+LYRIIVNT LQV HLPSNAYPLPD Subject 6326 LVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINSFK*A*N*ASHLMLVPDQESNTIIMGLHFFLGHHFNG*LSQSVCIGDLYRIIVNTILQVAHLPSNAYPLPD 6886
Range 3: 6324 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
381.4 bits(826) | 0.0 | 176/188(94%) | 0/188(0%) | Minus/Minus |
Query 77 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*SFHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KXXXXXXXXXXXLNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNEPPLLPRSSFQWIALPAGTHRKPLSHNCQYISPGYPSP*QCISAPRL 640 FGMGPRTAHQNLKNLGRTSTHQVY LSLALHTLENKA*CTFL*D*GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAHYE*LLEI*AH*K LQTQMLTML*LNYS*YSNNAKYLRPNQ LQIGLKLSISSYACS*PRI*HNYN PPLLPRSSFQW+ALP G HR+PLSHNCQY SPG PSP*QCISAPRL Subject 6324 FGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQ*LQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWLALPVGMHRRPLSHNCQYNSPGCPSP*QCISAPRL 6887
Range 4: 6327 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
366.3 bits(793) | 0.0 | 175/187(94%) | 0/187(0%) | Plus/Plus |
Query 80 SGSGYALLGRWVTWRNVLTIMR*RFPMRTGWESYPLK**PRKKWRLIIIVLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*EFSVCLNFQ*SFIVCLXXXXXXXXGS*FPRMKTS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 640 SGSGYALLGRW TWR VLTIMR*R PM T WES PLK**PRKKWR IIIVLDSWSGTSIR*DAQFQAYLK LIRP*VFGII*VL*II*LKHCQHLSL* FSVCLNFQ*SFIVCLVVVKVV**GS*FPRM+ S*LSQQVFQTALISQEGTLSLILQGVQCQGK IYLMSTCPSKIFQVLMCCSRTHTK Subject 6327 SGSGYALLGRWATWRIVLTIMR*RSPMHTDWES*PLK**PRKKWRPIIIVLDSWSGTSIR*DAQFQAYLKLLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFIVCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTK 6887
Range 5: 6469 to 6666 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 66/66(100%) | 0/66(0%) | Minus/Minus |
Query 222 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 419 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL Subject 6469 GTL*MTTGNLSTLKTPTNSNADNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL 6666
Range 6: 6715 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 56/57(98%) | 0/57(0%) | Minus/Minus |
Query 468 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 638 WYGSENSTSKPEKSWTDKYSSSI TFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF Subject 6715 WYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6885
Range 7: 6331 to 6414 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 27/28(96%) | 0/28(0%) | Minus/Minus |
Query 84 RYA*ETSIA*LSIHFSRLPISLAMHIRS 167 RYA*ETSIA*LSI FSRLPISLAMHIRS Subject 6331 RYA*ETSIA*LSIQFSRLPISLAMHIRS 6414
Range 8: 6331 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
300.7 bits(650) | 0.0 | 173/185(94%) | 0/185(0%) | Plus/Plus |
Query 84 GADMHC*GDG*PGEMY*QLCDRGFLCVPAGRAIH*NXXXXXXXXXXXXC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FXXXXXXXXXCRSFQCA*IXXXXXXCAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVXXXXXXXXCAVLGPIP 638 GADMHC*GDG PGE+Y*QLCDRG LC+P GRA H*NDDRGRSGG L*LC*ILGQEQA*DEMLNFRPI*S *LGLKYLALFEYYE*FS*SIVSI*VCR FQCA*ISSSHS*CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH*ALFSRVCSARES YT**VLVRPRFFRF*CAVLGPIP Subject 6331 GADMHC*GDGQPGELY*QLCDRGLLCIPTGRASH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SY*LGLKYLALFEYYE*FS*SIVSI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIP 6885
Nucleotide Sequence (615 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
472.1 | 2274.7 | 30% | 2.888e-131 | 80% | AB277783.1 | |
470.3 | 2312.3 | 30% | 1.036e-130 | 81% | KX274275.1 | |
461.1 | 2279.1 | 30% | 5.901e-128 | 78% | AY368590.1 | |
445.1 | 1449.1 | 26% | 3.996e-123 | 45% | AF026278.1 | |
443.7 | 1417.7 | 28% | 1.036e-122 | 46% | JX559646.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 10
Range 1: 587 to 1195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
472.1 bits(1024) | 0.0 | 195/203(96%) | 0/203(0%) | Minus/Plus |
Query 6 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 614 +RICIAREMGNLENCIDNYAIE SYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WHGVIIMNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIREL+TEDESF AFTAGVPDTPNLSGRYIKPYSPGCAVKG+INILDEYLSV DISGFDVLFSDPYQNISVPREAHFIKSKTCRF Subject 587 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHGVIIMNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 1195
Range 2: 588 to 1199 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
389.2 bits(843) | 0.0 | 169/204(83%) | 0/204(0%) | Plus/Minus |
Query 2 RQICRSWTL*SEPPSEH*YFDMGQRIARQNQKCHQQTDTHQVCLSSLLQRNQESMA*CTSQKDWECQELRL*RL*NSRPQ**VLLSNYFYRYQEHYEQQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PRTAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQCKFS 613 RQICRS TL*SEPP EH*YFDMGQ+I RQNQKCH QTDTHQVCLSS LQ NQESMA*CTSQ+ WEC+E R *RL*NSRPQ* VLL N FY YQE EQQLEI*A Y++PQTQT TKL*LSYS**SHHAK+LRPNL*LQT QKLS SSC YF* TAHSCS LQL LHSSFQLTTRP CRHR PQLH+YQCS PGYPF EQCKFS Subject 588 RQICRSLTL*SEPPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSPLQHNQESMA*CTSQRGWECRERRP*RL*NSRPQ*QVLLLNCFYHYQERCEQQLEI*ARYKYPQTQT*TKL*LSYS**SHHAKYLRPNL*LQTTQKLSTSSCVYF*LGTAHSCSVLQLPLHSSFQLTTRPACRHRIPQLHSYQCSSPGYPFHEQCKFS 1199
Range 3: 719 to 1195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
303.0 bits(655) | 0.0 | 130/159(82%) | 0/159(0%) | Plus/Minus |
Query 6 KSAGLGLYEVSLPRNTDILIWVRE*HVKTRNVINRQILIKYVYPPFYSATRRVWLDVPPRKIGSVRNSGCEGCETLVLSDEFSYQTTFTATRNTMNNNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV 482 KSAGL LYEVSLP NTDILIWVR+*HVKTRNV RQILIKYVY P YS TRRVWL+VPPR++GSV N+G +G ETLVLSD+FSY T FT TRN +NNNWKSEH I+THKLKR QSFN*VIHNNHTMPNT*GLIYSFKQ RN*A HLV ISN EPHTVVV Subject 719 KSAGL*LYEVSLPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPLYSTTRRVWLNVPPREVGSVGNAGRKGYETLVLSDKFSY*TAFTTTRNAVNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVFISN*EPHTVVV 1195
Range 4: 587 to 682 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.9 bits(144) | 0.0 | 28/32(88%) | 0/32(0%) | Plus/Minus |
Query 519 QLAQPVGIGLLNCIIINAVFQVTHFASNANSL 614 QLAQPVGIG LNCI+INAV QVTHF SNANSL Subject 587 QLAQPVGIGYLNCIVINAVLQVTHFTSNANSL 682
Range 5: 589 to 861 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.8 bits(408) | 0.0 | 87/91(96%) | 0/91(0%) | Plus/Minus |
Query 340 VDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAMQIL 612 VDKALTKLFIIITPCQ LKA*SIASNNPEIEHLILCLFLT+NRTQL*CASTSSSFIISIDNSP+L*A*D+SIA*LSMQFSRLPISRAMQIL Subject 589 VDKALTKLFIIITPCQILKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPSL*A*DTSIA*LSMQFSRLPISRAMQIL 861
Range 6: 940 to 1200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
181.1 bits(389) | 0.0 | 80/87(92%) | 0/87(0%) | Plus/Minus |
Query 1 SSNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 S NLQV DFMK*ASLGTLIF*YGSEN+TSKPEMS TDRYSSSMFI PFTAQPGEYGLMYLPERLGVSGTPAVKA+KLSSSV SSLIK Subject 940 SPNLQVFDFMK*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKLSSSVTSSLIK 1200
Range 7: 589 to 1200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.1 bits(714) | 0.0 | 168/204(82%) | 0/204(0%) | Minus/Plus |
Query 1 ENLHCSRNG*PGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAVLG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQIXXXXXXXSW*R*K*FDKRTHH*GREFXXXXXXXXXXXXSFWEVHQAILSWLRCKREDKHT**VSVC**HFWF*RAIL*PISKYQCSEGGSLHKVQDLQI*R 612 ENLHCS NG*PG+LH**LCN*G+LCLQ GRVVN*NDE*R S*S LQLCAV *K* QDE+LNFW+V*SYRLGLK LAWCDYYE*LS*SFV+V*VCG L* AQISSCCS SW* *K F+KRT H*GREFHSL+ R S HSQ WEVH AILSWL CK EDKHT**VSVC *HFWF*R I *PISKYQCS+GGSLHKV+DLQI R Subject 589 ENLHCS*NG*PGELH**LCN*GILCLQAGRVVN*NDE*RGS*STLQLCAVPS*K*TQDEVLNFWVV*SYRLGLKYLAWCDYYE*LS*SFVYV*VCGYL*RAQISSCCSQRSW*W*KQFNKRTCH*GREFHSLYGRRSRHSQPLWEVH*AILSWLCCKGEDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGSLHKVKDLQIWR 1200
Range 8: 948 to 1196 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 66/83(80%) | 0/83(0%) | Minus/Plus |
Query 5 ENSSLRTRVSQPSQPEFLTLPIFLGGTSSHTLLVAL*KGG*TYLMSICLLMTFLVLTCYSLTHIKISVFRGRLTS*SPRPADL 253 EN SLRTRVS P +P F TLP LGGT SHTLLV L*+G *TYLMSICL +TFLVLTCY LTHIKISVF+GRLTS*S RPADL Subject 948 ENLSLRTRVS*PLRPAFPTLPTSLGGTLSHTLLVVL*RGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGRLTS*SQRPADL 1196
Range 9: 720 to 911 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
121.1 bits(258) | 0.0 | 57/64(89%) | 0/64(0%) | Minus/Plus |
Query 290 TTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLLF 481 TTTVCGS LEI+TR* AQFL CLKL*IRP*VFGMV*LL*IT*LKLC RLSLWV I CSDFQLLF Subject 720 TTTVCGS*LEINTR*GAQFLGCLKL*IRP*VFGMV*LL*IT*LKLCLRLSLWVFIACSDFQLLF 911
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 10
Range 1: 6331 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
470.3 bits(1020) | 0.0 | 195/203(96%) | 0/203(0%) | Minus/Plus |
Query 6 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 614 +RICIAREMGNLENCIDNYAIE SYAYRLGEL+IEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIREL+TEDE+F AFTAGVPDTPNLSGRYIKPYSPGCAVKG+INILDEYLSV DISGFDVLFSDPYQNISVPREAHFIKSKTCRF Subject 6331 ERICIAREMGNLENCIDNYAIEVSYAYRLGELAIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELVTEDENFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 6939
Range 2: 6332 to 6943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
403.8 bits(875) | 0.0 | 174/204(85%) | 0/204(0%) | Plus/Minus |
Query 2 RQICRSWTL*SEPPSEH*YFDMGQRIARQNQKCHQQTDTHQVCLSSLLQRNQESMA*CTSQKDWECQELRL*RL*NSRPQ**VLLSNYFYRYQEHYEQQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PRTAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQCKFS 613 RQICRS TL*SEPP EH*YFDMGQ+I RQNQKCH QTDTHQVCLSSLLQ NQESMA*CTSQ+ W CQE R *RL*NSRPQ* VLL NYFY YQE YEQQLEI*A Y+HPQTQT TKL*LSYS**SHHAKHLRPNL*LQT QKLS SSCAYF* TAHSCS LQL LHSSFQL TRP CRHR PQLH+YQCS PGYPF EQCKFS Subject 6332 RQICRSLTL*SEPPLEH*YFDMGQKITRQNQKCHLQTDTHQVCLSSLLQHNQESMA*CTSQRGWVCQERRP*RL*NSRPQ*QVLLLNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SHHAKHLRPNL*LQTTQKLSTSSCAYF*LGTAHSCSVLQLPLHSSFQLPTRPACRHRIPQLHSYQCSSPGYPFHEQCKFS 6943
Range 3: 6331 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
371.8 bits(805) | 0.0 | 171/203(84%) | 0/203(0%) | Plus/Minus |
Query 6 KSAGLGLYEVSLPRNTDILIWVRE*HVKTRNVINRQILIKYVYPPFYSATRRVWLDVPPRKIGSVRNSGCEGCETLVLSDEFSYQTTFTATRNTMNNNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVVRXXXXXXXXXXXQLAQPVGIGLLNCIIINAVFQVTHFASNANSL 614 KSAGL LYEVSLP NTDILIWVR+*HVKTRNV RQILIKYVY PFYS TRRVWLDVPPR++G VRN+G +G E LVLSD+FSY TTFT TRN MNNNWKSEH I+THKLKR QSFN*VIHNNHTMPNT*GLIYSFKQ RN*A HLVLISN EPHTVVV FNF FIHHFN QLAQPVGIG LNCI+INAV QVTHF SNANSL Subject 6331 KSAGL*LYEVSLPWNTDILIWVRK*HVKTRNVTYRQILIKYVYLPFYSTTRRVWLDVPPREVGCVRNAGRKGYEILVLSDKFSY*TTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNHTMPNT*GLIYSFKQPRN*APHLVLISN*EPHTVVVCFNFLFIHHFNCQLAQPVGIGYLNCIVINAVLQVTHFTSNANSL 6939
Range 4: 6333 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
188.9 bits(406) | 0.0 | 87/91(96%) | 0/91(0%) | Plus/Minus |
Query 340 VDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAMQIL 612 VDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLT+NRTQL*CASTSSSFIISI NSP+L*A*D+SIA*LSMQFSRLPISRAMQIL Subject 6333 VDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIANSPSL*A*DTSIA*LSMQFSRLPISRAMQIL 6605
Range 5: 6684 to 6944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 79/87(91%) | 0/87(0%) | Plus/Minus |
Query 1 SSNLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 S NLQV DFMK*ASLGTLIF*YGSEN+TSKPEMS TDRYSSSMFI PFTAQPGEYGLMYLPERLGVSGTPAVKA+K SSSV SSLIK Subject 6684 SPNLQVFDFMK*ASLGTLIF*YGSENNTSKPEMSLTDRYSSSMFIFPFTAQPGEYGLMYLPERLGVSGTPAVKAMKFSSSVTSSLIK 6944
Range 6: 6333 to 6719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.0 bits(489) | 0.0 | 112/129(87%) | 0/129(0%) | Minus/Plus |
Query 226 ENLHCSRNG*PGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAVLG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQIXXXXXXXSW*R*K*FDKRTHH*GREF 612 ENLHCS NG*PG+LH**LCN*G+LCLQ GRV N*NDE*R S*S LQLCAV *K*AQDE+LNFW+V*SYRLGLKCLAWCDYYE*LS*SFV+V*VCGCL* AQISSCCS* SW* *K*F+KRT H*GREF Subject 6333 ENLHCS*NG*PGELH**LCN*GILCLQAGRVGN*NDE*RGS*STLQLCAVPS*K*AQDEVLNFWVV*SYRLGLKCLAWCDYYE*LS*SFVYV*VCGCL*RAQISSCCS*RSW*W*K*FNKRTCH*GREF 6719
Range 7: 6762 to 6944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 54/61(89%) | 0/61(0%) | Minus/Plus |
Query 1 WEVHQAILSWLRCKREDKHT**VSVC**HFWF*RAIL*PISKYQCSEGGSLHKVQDLQI*R 183 WEVHQAILSWL CKREDKHT**VSVC *HFWF*R I *PISKYQCS+GGSLHKV+DLQI R Subject 6762 WEVHQAILSWLCCKREDKHT**VSVCK*HFWF*RVIF*PISKYQCSKGGSLHKVKDLQIWR 6944
Range 8: 6692 to 6940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 67/83(81%) | 0/83(0%) | Minus/Plus |
Query 5 ENSSLRTRVSQPSQPEFLTLPIFLGGTSSHTLLVAL*KGG*TYLMSICLLMTFLVLTCYSLTHIKISVFRGRLTS*SPRPADL 253 EN SLRTR+S P +P FLT P LGGTSSHTLLV L*KG *TYLMSICL +TFLVLTCY LTHIKISVF+GRLTS*S RPADL Subject 6692 ENLSLRTRIS*PLRPAFLTHPTSLGGTSSHTLLVVL*KGR*TYLMSICL*VTFLVLTCYFLTHIKISVFQGRLTS*SQRPADL 6940
Range 9: 6464 to 6658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 59/65(91%) | 0/65(0%) | Minus/Plus |
Query 287 TTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLLFI 481 TTTVCGS LEISTR* AQFL CLKL*IRP*VFGMV*LL*IT*LKLC RLSLWV I CSDFQLLFI Subject 6464 TTTVCGS*LEISTR*GAQFLGCLKL*IRP*VFGMV*LL*IT*LKLCLRLSLWVFIACSDFQLLFI 6658
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 9
Range 1: 6331 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
461.1 bits(1000) | 0.0 | 194/203(96%) | 0/203(0%) | Minus/Plus |
Query 6 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 614 +RICIAREMGNLENCIDNYAIE SYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWH IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESF AFTAGVPDTPNLSGRYIKPYSPGCAVKG+INILDEYLSV+D S FDVLFSDPYQNISVPREAHFIKSKTCRF Subject 6331 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHY*IIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVNDFSDFDVLFSDPYQNISVPREAHFIKSKTCRF 6939
Range 2: 6332 to 6940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.0 bits(871) | 0.0 | 175/203(86%) | 0/203(0%) | Plus/Minus |
Query 5 QICRSWTL*SEPPSEH*YFDMGQRIARQNQKCHQQTDTHQVCLSSLLQRNQESMA*CTSQKDWECQELRL*RL*NSRPQ**VLLSNYFYRYQEHYEQQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PRTAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQCKFS 613 Q CRS TL*SEPP EH*YFDMGQRI RQNQK H QTDTH+VCLSSLLQ NQESMA*CTSQK EC+E R *+L*NSR Q** LLSNYFY YQE YEQQLEI*A Y+HPQTQT TKL*LSYS**S++AKHLRPNL*LQTIQKLSISSCAYF*P TAHSCSALQL LHSSFQLTTRPTCRHRTPQLHNYQC+FPG PF EQCKFS Subject 6332 QTCRSLTL*SEPPLEH*YFDMGQRITRQNQKSHSQTDTHRVCLSSLLQHNQESMA*CTSQKGLECRERRP*KL*NSRLQ**ALLSNYFYHYQERYEQQLEI*ARYKHPQTQT*TKL*LSYS**SNNAKHLRPNL*LQTIQKLSISSCAYF*PGTAHSCSALQLPLHSSFQLTTRPTCRHRTPQLHNYQCNFPGCPFHEQCKFS 6940
Range 3: 6331 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
368.6 bits(798) | 0.0 | 172/203(85%) | 0/203(0%) | Plus/Minus |
Query 6 KSAGLGLYEVSLPRNTDILIWVRE*HVKTRNVINRQILIKYVYPPFYSATRRVWLDVPPRKIGSVRNSGCEGCETLVLSDEFSYQTTFTATRNTMNNNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVVRXXXXXXXXXXXQLAQPVGIGLLNCIIINAVFQVTHFASNANSL 614 K AGL LYEVSLP NTDILIWVRE*HVK R VI+RQILI+YVY PFYS TRRVWLDVPPRK+ SV N+G E ETLV S+E SYQTTFT TRN MNNNWKSEH I+THKLKR QSFN*VIHNN MPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVVRFNF FIHHFN*QLAQPVGIG LNCIIINA+FQV HF SNANSL Subject 6331 KPAGL*LYEVSLPWNTDILIWVRE*HVKIRKVIHRQILIEYVYLPFYSTTRRVWLDVPPRKVWSVGNAGRESYETLVFSNELSYQTTFTTTRNAMNNNWKSEHAINTHKLKRRQSFN*VIHNNLIMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVVRFNFLFIHHFN*QLAQPVGIGHLNCIIINAIFQVAHFTSNANSL 6939
Range 4: 6333 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.7 bits(399) | 0.0 | 87/91(96%) | 0/91(0%) | Plus/Minus |
Query 340 VDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAMQIL 612 VDKALTKLFIII CQTLKA*SIASNNPEIEHLILCLFLT+NRTQL*CASTSSSFIISIDNSPNL*A*D+SIA*LSMQFSRLPISRAMQIL Subject 6333 VDKALTKLFIII**CQTLKA*SIASNNPEIEHLILCLFLTRNRTQL*CASTSSSFIISIDNSPNL*A*DTSIA*LSMQFSRLPISRAMQIL 6605
Range 5: 6684 to 6938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 77/85(91%) | 0/85(0%) | Plus/Minus |
Query 7 NLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 NLQV DFMK*ASLGTLIF*YGSEN+TSK E S TDRYSSSMFI PFTAQPGEYGLMYLPER GVSGTPAVKA+KLSSSVMSSLIK Subject 6684 NLQVFDFMK*ASLGTLIF*YGSENNTSKSEKSFTDRYSSSMFIFPFTAQPGEYGLMYLPERFGVSGTPAVKAMKLSSSVMSSLIK 6938
Range 6: 6333 to 6938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
336.5 bits(728) | 0.0 | 174/202(86%) | 0/202(0%) | Minus/Plus |
Query 7 ENLHCSRNG*PGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAVLG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQIXXXXXXXSW*R*K*FDKRTHH*GREFXXXXXXXXXXXXSFWEVHQAILSWLRCKREDKHT**VSVC**HFWF*RAIL*PISKYQCSEGGSLHKVQDLQI 612 ENLHCS NG PGKLH**LCN*GVLCLQVGRVVN*NDE*R S*SALQLCAV G*K*AQDEMLNFWIV*SYRLGLKCLA DYYE*LS*SFV+V*VCGCL* AQISSCCS* SW* *K*FDKR H+* REFHS H R S HS+ FWEVHQAILSWL CKREDKHT *VSVC * F F*R IL*PISKYQCS+GGSLHKV+DLQ+ Subject 6333 ENLHCS*NGQPGKLH**LCN*GVLCLQVGRVVN*NDE*RGS*SALQLCAVPG*K*AQDEMLNFWIV*SYRLGLKCLALLDYYE*LS*SFVYV*VCGCL*RAQISSCCS*RSW*W*K*FDKRAHY*RREFHSFHGRRSRHSKPFWEVHQAILSWLCCKREDKHTR*VSVCE*LF*F*RVIL*PISKYQCSKGGSLHKVKDLQV 6938
Range 7: 6692 to 6940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.0 bits(297) | 0.0 | 65/83(78%) | 0/83(0%) | Minus/Plus |
Query 5 ENSSLRTRVSQPSQPEFLTLPIFLGGTSSHTLLVAL*KGG*TYLMSICLLMTFLVLTCYSLTHIKISVFRGRLTS*SPRPADL 253 E+S L+TRVS S+P F TL FLGGTSSHTLLV L*KG *TY MSICL MTFL+LTCYSLTHIKISVF+GRLTS*S RPA L Subject 6692 ESSLLKTRVS*LSRPAFPTLQTFLGGTSSHTLLVVL*KGR*TYSMSICL*MTFLILTCYSLTHIKISVFQGRLTS*SQRPAGL 6940
Range 8: 6461 to 6658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 60/66(91%) | 0/66(0%) | Minus/Plus |
Query 287 RTTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLLFI 484 RTTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFG++ LL*IT*LKLC RLSLWV I CSDFQLLFI Subject 6461 RTTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFGIIRLL*IT*LKLCLRLSLWVFIACSDFQLLFI 6658
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 11
Range 1: 6331 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
445.1 bits(965) | 0.0 | 181/203(89%) | 0/203(0%) | Minus/Plus |
Query 6 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 614 +RICIAREMGNLENCIDNYAIE SYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALS+WH + IMNNLVKALSTFEFVGV+SVL+FPVV+HSVPGSGKSSLIRELI+EDE+F AFTAGVPD+PNL+GRYIKPYSPGCAV G++NILDEYLSV D SGFDVLFSDPYQNIS+P+EAHFIKSKTCRF Subject 6331 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSIWHYLSIMNNLVKALSTFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQNISIPKEAHFIKSKTCRF 6939
Range 2: 6336 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 71/90(79%) | 0/90(0%) | Plus/Minus |
Query 340 VDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAMQI 609 VD ALTKLFII+ CQ LKA*SIASN PEIEHLILCLFLTKN TQL* ASTSSS IIS+D+SP+ A*++SIA*LS+QFSRLPIS AM I Subject 6336 VDNALTKLFIILK*CQILKA*SIASNRPEIEHLILCLFLTKNLTQL*WASTSSSVIISMDSSPSRYA*ETSIA*LSIQFSRLPISLAMHI 6605
Range 3: 6684 to 6938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
143.1 bits(306) | 0.0 | 65/85(76%) | 0/85(0%) | Plus/Minus |
Query 7 NLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 NLQV D MK ASLG L+F YGSENSTSKPE S TD+YSSSMF P TA PGE GLMYLP RLG+SGTPAVKA+K SSS +SSLIK Subject 6684 NLQVFDLMKCASLGMLMFWYGSENSTSKPEKSWTDKYSSSMFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKFSSSEISSLIK 6938
Range 4: 6463 to 6921 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
176.1 bits(378) | 0.0 | 78/153(51%) | 0/153(0%) | Plus/Minus |
Query 24 LYEVSLPRNTDILIWVRE*HVKTRNVINRQILIKYVYPPFYSATRRVWLDVPPRKIGSVRNSGCEGCETLVLSDEFSYQTTFTATRNTMNNNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV 482 L E+ L RN D+L+WVRE H+KT +++ Q+LIKYV+ P + R+ L+VP +I +V N+ CE E L+L + Y TTFT TR+TMN+ WK +HT +T+KLK Q FN*+IHN MPNT*GLI FK + N*ASHL+L+ +QE +T+++ Subject 6463 LDEMCLFRNADVLVWVREQHIKT*KILDGQVLIKYVHFPRHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY*TTFTTTRHTMNDYWKFKHTENTYKLKC*QCFN*IIHNTQIMPNT*GLINRFK*A*N*ASHLMLVPDQESNTIIM 6921
Range 5: 6331 to 6423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 18/31(58%) | 0/31(0%) | Plus/Minus |
Query 522 LAQPVGIGLLNCIIINAVFQVTHFASNANSL 614 L+QPV IG L II+N + QVTH SNA L Subject 6331 LSQPVRIGDLYRIIVNTILQVTHLPSNAYPL 6423
Range 6: 6341 to 6943 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.6 bits(377) | 0.0 | 103/201(51%) | 0/201(0%) | Plus/Minus |
Query 2 RQICRSWTL*SEPPSEH*YFDMGQRIARQNQKCHQQTDTHQVCLSSLLQRNQESMA*CTSQKDWECQELRL*RL*NSRPQ**VLLSNYFYRYQEHYEQQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PRTAHSCSALQLLLHSSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQC 604 RQ + T *+ P E * F MG R A QN K +T THQVC S E+ A*CT D C E L*+L*NS P+ L NYFY YQ HYE LEI*AH +H QTQ T L*L+YS* S++AK+LRPN LQ KLSISS A *PR H+ + LL SSFQ P HR P HN Q + PGYP QC Subject 6341 RQTYKFLT**NVPL*EC*CFGMGPRTAHQNLKNLGRTSTHQVCSLSPALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAHYE*LLEI*AH*KHLQTQMLTML*LNYS*YSNNAKYLRPNQSLQIGLKLSISSYACS*PRI*HNYNGPPLLPRSSFQWIALPAGTHRRPLSHNCQYNSPGYPSP*QC 6943
Range 7: 6336 to 6719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 70/128(55%) | 0/128(0%) | Minus/Plus |
Query 226 NLHCSRNG*PGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAVLG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQIXXXXXXXSW*R*K*FDKRTHH*GREF 609 ++HC +G*PG+L+* LC+ G+LC+ GR ++*ND+ RS L LC +LG + A DEMLNF +*S LGLK LA +YYE* S*S V++*VC C CA ISS S*C+W* *K*F+K + G EF Subject 6336 DMHC*GDG*PGELY*QLCDRGLLCVPAGRAIH*NDDRGRSGGPL*LC*ILGQEQA*DEMLNFRPI*SD*LGLKYLALFEYYE*FS*SIVNI*VCRCFQCA*ISSSHS*CAW*W*K*FNKGANFRG*EF 6719
Range 8: 6707 to 6928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 33/74(45%) | 0/74(0%) | Minus/Plus |
Query 17 RTRVSQPSQPEFLTLPIFLGGTSSHTLLVAL*KGG*TYLMSICLLMTFLVLTCYSLTHIKISVFRGRLTS*SPR 238 R R+S SQ F T I GT S L +G *TYLMS C F VL C S TH K S F R S S + Subject 6707 RMRIS*LSQQVFQTALISQEGTLSLILQGVQCRGK*TYLMSTCPSKIFQVLMCCSRTHTKTSAFLKRHISSSQK 6928
Range 9: 6473 to 6658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 37/62(60%) | 0/62(0%) | Minus/Plus |
Query 287 VCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLLFI 472 V SW S R*DAQF LK IRP*VFG++*+L*I *LK C LSL V VC +FQ FI Subject 6473 VLDSWSGTSIR*DAQFQAYLKRLIRP*VFGII*VL*II*LKHCQHLSL*VFSVCLNFQ*SFI 6658
Range 10: 6338 to 6424 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 18/29(62%) | 0/29(0%) | Minus/Plus |
Query 521 FALLAKWVTWKTALIIMQLRSPMPTGWAS 607 +ALL +WVTW+ L IM+ RSPM TGW S Subject 6338 YALLGRWVTWRIVLTIMR*RSPMRTGWES 6424
Range 11: 6765 to 6932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Plus |
Query 13 EVHQAILSWLRCKREDKHT**VSVC**HFWF*RAIL*PISKYQCSEGGSLHKVQDL 180 +VH A+ S + E +HT**V V F F* A+L PI K+Q S G+ H+V++L Subject 6765 KVH*ALFSRVCSAGESEHT**VLVRPRFFRF*CAVLGPIPKHQHS*RGTFHQVKNL 6932
Grapevine Rupestris stem pitting virus isolate 3138 07, complete genome
Sequence ID: JX559646.1 Length: 8726 Number of Matches: 12
Range 1: 6331 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
443.7 bits(962) | 0.0 | 179/203(88%) | 0/203(0%) | Minus/Plus |
Query 6 KRICIAREMGNLENCIDNYAIEESYAYRLGELSIEMMNEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAID*ALSVWHGVIIMNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF 614 +RICIAREMGNLENCIDNYAIE SYAYRLGELSIEMM EEEVEAHYNCVRFLVRNKHKMRCSISGLFEA+D*ALS+WH + IMNNLVKALSTFEF+GV+SVL+FPVV+HSVPGSGKSSLIRELI+EDESF AFTAGVPD+PNL+GRYIKPYSPGCAV+G++NILDEYLSV DISGFDVL SDPYQN S+P+EAHFIKSKTCRF Subject 6331 ERICIAREMGNLENCIDNYAIEVSYAYRLGELSIEMMTEEEVEAHYNCVRFLVRNKHKMRCSISGLFEAVD*ALSIWHCLSIMNNLVKALSTFEFIGVFSVLKFPVVIHSVPGSGKSSLIRELISEDESFVAFTAGVPDSPNLTGRYIKPYSPGCAVQGKVNILDEYLSVQDISGFDVLLSDPYQNTSIPKEAHFIKSKTCRF 6939
Range 2: 6336 to 6605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.8 bits(338) | 0.0 | 74/90(82%) | 0/90(0%) | Plus/Minus |
Query 340 VDKALTKLFIIITPCQTLKA*SIASNNPEIEHLILCLFLTKNRTQL*CASTSSSFIISIDNSPNL*A*DSSIA*LSMQFSRLPISRAMQI 609 VD ALTKLFII+ CQ LKA*S ASN PEIEHLILCLFLT+N TQL*CASTSSS IIS+D+SPNL A*D+SIA*LSMQFSRLPIS AM I Subject 6336 VDNALTKLFIILKQCQILKA*STASNRPEIEHLILCLFLTRNLTQL*CASTSSSVIISMDSSPNLYA*DTSIA*LSMQFSRLPISLAMHI 6605
Range 3: 6684 to 6938 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 65/85(76%) | 0/85(0%) | Plus/Minus |
Query 7 NLQVLDFMK*ASLGTLIF*YGSENSTSKPEMSSTDRYSSSMFILPFTAQPGEYGLMYLPERLGVSGTPAVKAVKLSSSVMSSLIK 261 NLQVLDFMK ASLG L+F YGSE+STSKPE+S TD+YSSS+F P TA PGE GLMYLP RLG+SGTPAVKA KLSSS ++SLIK Subject 6684 NLQVLDFMKCASLGILVFWYGSESSTSKPEISWTDKYSSSIFTFPCTAHPGE*GLMYLPVRLGLSGTPAVKATKLSSSEINSLIK 6938
Range 4: 6463 to 6939 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.4 bits(383) | 0.0 | 83/159(52%) | 0/159(0%) | Plus/Minus |
Query 6 KSAGLGLYEVSLPRNTDILIWVRE*HVKTRNVINRQILIKYVYPPFYSATRRVWLDVPPRKIGSVRNSGCEGCETLVLSDEFSYQTTFTATRNTMNNNWKSEHTIDTHKLKRGQSFN*VIHNNHTMPNT*GLIYSFKQSRN*ASHLVLISNQEPHTVVV 482 KS GLGLYE+ L NT IL+ V + ++K N+++ QILIKY++ P + A+ RV LDVP ++ ++ N+ CE ETLVL D Y TT T R TM N+WK +HT +T+K + Q FN +IHN TMPNT*GLI FK + N*A HL+L+ N EPHT+VV Subject 6463 KSTGLGLYEMRLFGNTGILVRV*KQYIKA*NILDGQILIKYIHFPLHCASWRVRLDVPSCEVRTIWNTCCESHETLVL*D*LPY*TTLTTARYTMYNDWKFKHTENTYKFEG*QCFNQIIHNTQTMPNT*GLINRFK*A*N*APHLMLVPN*EPHTIVV 6939
Range 5: 6332 to 6442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 17/37(46%) | 0/37(0%) | Plus/Minus |
Query 503 SSFQLTTRPTCRHRTPQLHNYQCSFPGYPFREQCKFS 613 SSF+ P HRTP HNYQCS P C F+ Subject 6332 SSFRWIAHPIYMHRTPLSHNYQCSSLDCPSLWLCIFA 6442
Range 6: 6336 to 6719 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 61/128(48%) | 0/128(0%) | Minus/Plus |
Query 226 NLHCSRNG*PGKLH**LCN*GVLCLQVGRVVN*NDE*RRS*SALQLCAVLG*K*AQDEMLNFWIV*SYRLGLKCLAWCDYYE*LS*SFVHV*VCGCL*CAQIXXXXXXXSW*R*K*FDKRTHH*GREF 609 N+H R+G +LH**LC+ GVLC+ +G ++ ND+ LQLC V *+ A DE+LNF +*S LGLK LA +YYE* *S V++ + C CA ISS +*C+W *+*F+K + GREF Subject 6336 NMHSQRDGQSRELH**LCDRGVLCI*IG*AIHRNDDRGGGGGTLQLCEVPS*EQA*DEVLNFRPI*SG*LGLKYLALFEYYE*FG*SIVNLRIYRCFQCA*ISSRYT*CTWQW*E*FNKGVNLRGREF 6719
Range 7: 6701 to 6940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 41/80(51%) | 0/80(0%) | Minus/Plus |
Query 5 SLRTRVSQPSQPEFLTLPIFLGGTSSHTLLVAL*KGG*TYLMSICLLMTFLVLTCYSLTHIKISVFRGRLTS*SPRPADL 244 S RTRVS SQ F + GTSS TL A KG * YLMSIC F L T KI VF R S*SPRP DL Subject 6701 SQRTRVSWLSQQVFQIVLTSQEGTSSLTLQDAQCKGK*IYLMSICPSKIFQALMYCFQTRTKIPVFPKRRIS*SPRPVDL 6940
Range 8: 6464 to 6940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
118.8 bits(253) | 0.0 | 76/159(48%) | 0/159(0%) | Plus/Minus |
Query 5 QICRSWTL*SEPPSEH*YFDMGQRIARQNQKCHQQTDTHQVCLSSLLQRNQESMA*CTSQKDWECQELRL*RL*NSRPQ**VLLSNYFYRYQEHYEQQLEI*AHYRHPQTQTWTKL*LSYS**SHHAKHLRPNL*LQTIQKLSISSCAYF*PRTAHSCS 481 QI RSWTL*+ P E+ YF G + Q+ K +T+THQV SL R ES A*CT + E L*+ NSRP L NY Y Q HY +LEI*AH +H + T L* +YS* S++AK+LRPN LQ KLS SS A * T+H+CS Subject 6464 QIYRSWTL*NAPLWEYWYFGTGLKAVHQSLKYLGRTNTHQVYSLSLALRILESKA*CTFL*G*DYLEHLL*KPRNSRPLRLTPLLNYSYHCQVHYV*RLEI*AH*KHL*IRRLTML*PNYS*YSNNAKYLRPNQPLQIGLKLSTSSYACS*LGTSHNCS 6940
Range 9: 6331 to 6423 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 15/31(48%) | 0/31(0%) | Plus/Minus |
Query 522 LAQPVGIGLLNCIIINAVFQVTHFASNANSL 614 L Q + IG L IIINAV + H + A SL Subject 6331 LTQSICIGHLYRIIINAVL*IAHLSGYAYSL 6423
Range 10: 6464 to 6658 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 37/65(57%) | 0/65(0%) | Minus/Plus |
Query 287 TTTVCGSWLEISTR*DAQFLDCLKL*IRP*VFGMV*LL*IT*LKLCPRLSLWVSIVCSDFQLLFI 481 TT V GS L S R* AQF LK IRP*VFG+V*+L*I LK C +L V VC +FQ L+I Subject 6464 TTIV*GS*LGTSIR*GAQFQAYLKRLIRP*VFGIV*VL*IIWLKHCQPSNL*VFSVCLNFQSLYI 6658
Range 11: 6765 to 6932 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 28/56(50%) | 0/56(0%) | Minus/Plus |
Query 13 EVHQAILSWLRCKREDKHT**VSVC**HFWF*RAIL*PISKYQCSEGGSLHKVQDL 180 +VHQA+LS +R RE ++T**V V +F * P+ KYQ S+ G+ HKVQDL Subject 6765 KVHQALLSRMRSARESEYT**VFVRPRYFRL*CTAFRPVPKYQYSQRGAFHKVQDL 6932
Nucleotide Sequence (354 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
279.2 | 1243.3 | 32% | 1.474e-73 | 81% | KX274275.1 | |
276.0 | 1253.3 | 26% | 1.362e-72 | 80% | KR528585.1 | |
275.5 | 1228.7 | 27% | 1.871e-72 | 75% | AY368590.1 | |
273.7 | 904.2 | 21% | 6.56e-72 | 49% | HE591388.1 | |
273.7 | 904.0 | 36% | 6.664e-72 | 42% | AY881626.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 10
Range 1: 4129 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 115/117(98%) | 0/117(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK+DLEMDEECKV KAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD Subject 4129 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 4479
Range 2: 4128 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
254.9 bits(550) | 0.0 | 113/118(96%) | 0/118(0%) | Minus/Minus |
Query 1 ESYVL*QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV 354 ESYVL*QGSPA EMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAF TLHSSSISRS LIE ARARLGET VTNFPSDLFMKLLYRKLFPAPNV Subject 4128 ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLYRKLFPAPNV 4481
Range 3: 4305 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
114.2 bits(243) | 0.0 | 48/59(81%) | 0/59(0%) | Plus/Plus |
Query 178 CCYLRSFP*KGYRSKGWSLRDL**SSAISPWLH*SMSPCYSQ*RFHLTCW*SLSKHI*F 354 CCYL S P*+ YR KGWSLRDL**SSAI WLH SMS CY Q*RFHL+CW*SLSKHI*F Subject 4305 CCYL*SLP*ESYRPKGWSLRDL**SSAIPSWLHRSMSSCYPQ*RFHLSCW*SLSKHI*F 4481
Range 4: 4128 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 32/37(86%) | 0/37(0%) | Plus/Plus |
Query 1 YIWGWKEFPIQELHEEI*RKICDFCFT*AGSSQFNQE 111 YIWGWKEFPIQELHEEI*RKIC+ C T*AGSS+FNQ+ Subject 4128 YIWGWKEFPIQELHEEI*RKICNICLT*AGSSKFNQK 4238
Range 5: 4297 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 50/61(82%) | 0/61(0%) | Minus/Minus |
Query 170 IICALTRITSK*DESVTANNKET*INVTRGK*LNFIKDHAMTSL*TCNLSKENFEGNNIPA 352 IICALTRITSK DESVTA+NK+T*I+VTR +*LNFIKDHAMTSL* CN KE+F+GNNIPA Subject 4297 IICALTRITSKRDESVTADNKKT*IDVTRRE*LNFIKDHAMTSL*ACNFPKEDFKGNNIPA 4479
Range 6: 4129 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 35/42(83%) | 0/42(0%) | Minus/Minus |
Query 2 IHFQVLLD*IG*SPPR*NKSHKFSFRSLHEALV*ETLSSPKC 127 IHF V D*I *SPPR*+K +KFSFRSLHEALV*ETLSSPKC Subject 4129 IHF*VPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKC 4254
Range 7: 4307 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 47/58(81%) | 0/58(0%) | Minus/Minus |
Query 180 NHMCFDKDHQQVR*KRHCE*QGDIDQCNQGEIAELHQRSRNDQPLDL*PF*GKLRR*Q 353 NHMCFDKDHQQ R*KRHC *Q DID+CNQ IAELHQRSRNDQPL L* *G+L+R*Q Subject 4307 NHMCFDKDHQQER*KRHCG*QEDIDRCNQEGIAELHQRSRNDQPLGL*LS*GRLQR*Q 4480
Range 8: 4130 to 4234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.6 bits(115) | 0.0 | 31/35(89%) | 0/35(0%) | Minus/Minus |
Query 3 *LNWLEPA*VKQKSQIFLQIXXXXSCIGNSFQPQM 107 *LN LEPA*V+Q QIFLQISS*SSCIGNSFQPQM Subject 4130 *LNLLEPA*VRQMLQIFLQISS*SSCIGNSFQPQM 4234
Range 9: 4226 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
109.2 bits(232) | 0.0 | 69/85(81%) | 0/85(0%) | Plus/Plus |
Query 99 IQSRRTWKWMKSXXXXXXXXXXXXAGMLLPSKFSLERLQV*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSHLLVILVKAHMI 353 IQS+ T KWMKSVRW RQ NQRRRAGMLLP K SL +LQ *RLVIA*SLMKFSY LVT IYV LL AVTLSS LLVILVKAHMI Subject 4226 IQSKGT*KWMKSVRW*RQANQRRRAGMLLPLKSSLGKLQA*RLVIA*SLMKFSYSLLVTSIYVFLLSAVTLSSLLLVILVKAHMI 4480
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 10
Range 1: 4111 to 4461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.0 bits(596) | 0.0 | 114/117(97%) | 0/117(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK+DLEMDE CKV KAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD Subject 4111 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEGCKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 4461
Range 2: 4110 to 4463 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.2 bits(542) | 0.0 | 111/118(94%) | 0/118(0%) | Minus/Minus |
Query 1 ESYVL*QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV 354 ESYVL*QGSPA EMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAF TLH SSISRS LIE A+ARLGET VTNFPSDLFMKLLYRKLFPAPNV Subject 4110 ESYVL*QGSPAREMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHPSSISRSLLIEFAKARLGETNVTNFPSDLFMKLLYRKLFPAPNV 4463
Range 3: 4208 to 4462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 68/85(80%) | 0/85(0%) | Plus/Plus |
Query 99 IQSRRTWKWMKSXXXXXXXXXXXXAGMLLPSKFSLERLQV*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSHLLVILVKAHMI 353 IQS+ TW+WM+ VRW RQ NQRRRAGML P KF L +LQ *RLVIA*SLMKFSY PLVT IYV LLFAVTLSS LLVILVKAHMI Subject 4208 IQSKGTWRWMRGVRW*RQANQRRRAGMLSPLKFFLGKLQA*RLVIA*SLMKFSYSPLVTSIYVFLLFAVTLSSLLLVILVKAHMI 4462
Range 4: 4110 to 4220 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 31/37(84%) | 0/37(0%) | Plus/Plus |
Query 1 YIWGWKEFPIQELHEEI*RKICDFCFT*AGSSQFNQE 111 YIWGWKEFPIQELHEEI*RKIC+ C T*AG S+FNQ+ Subject 4110 YIWGWKEFPIQELHEEI*RKICNICLT*AGFSKFNQK 4220
Range 5: 4279 to 4461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 51/61(84%) | 0/61(0%) | Minus/Minus |
Query 170 IICALTRITSK*DESVTANNKET*INVTRGK*LNFIKDHAMTSL*TCNLSKENFEGNNIPA 352 IICALTRITSK DESVTANNK+T*I+VTRG+*LNFIKDHAMTSL* CN K+NF+G+NIPA Subject 4279 IICALTRITSKRDESVTANNKKT*IDVTRGE*LNFIKDHAMTSL*ACNFPKKNFKGDNIPA 4461
Range 6: 4111 to 4236 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 35/42(83%) | 0/42(0%) | Minus/Minus |
Query 2 IHFQVLLD*IG*SPPR*NKSHKFSFRSLHEALV*ETLSSPKC 127 IH QV D*I *SPPR*+K +KFSFRSLHEALV*ETLSSPKC Subject 4111 IHLQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKC 4236
Range 7: 4289 to 4462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.3 bits(241) | 0.0 | 49/58(84%) | 0/58(0%) | Minus/Minus |
Query 180 NHMCFDKDHQQVR*KRHCE*QGDIDQCNQGEIAELHQRSRNDQPLDL*PF*GKLRR*Q 353 NHMCFDKDHQQ R*KRHCE*Q DID+CNQG IAELHQRSRNDQPL L* * KL+R*Q Subject 4289 NHMCFDKDHQQER*KRHCE*QEDIDRCNQGGIAELHQRSRNDQPLGL*LS*EKLQR*Q 4462
Range 8: 4112 to 4216 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.8 bits(111) | 0.0 | 30/35(86%) | 0/35(0%) | Minus/Minus |
Query 3 *LNWLEPA*VKQKSQIFLQIXXXXSCIGNSFQPQM 107 *LN L+PA*V+Q QIFLQISS*SSCIGNSFQPQM Subject 4112 *LNLLKPA*VRQMLQIFLQISS*SSCIGNSFQPQM 4216
Range 9: 4287 to 4463 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.0 bits(249) | 0.0 | 49/59(83%) | 0/59(0%) | Plus/Plus |
Query 178 CCYLRSFP*KGYRSKGWSLRDL**SSAISPWLH*SMSPCYSQ*RFHLTCW*SLSKHI*F 354 CC+L SF *+ YR KGWSLRDL**SSAI PWLH SMS CYSQ*RFHL+CW*SLSKHI*F Subject 4287 CCHL*SFS*ESYRPKGWSLRDL**SSAIPPWLHRSMSSCYSQ*RFHLSCW*SLSKHI*F 4463
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 11
Range 1: 4129 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
275.5 bits(595) | 0.0 | 113/117(97%) | 0/117(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 TFGAGKSFL+KSFMKRSEGKFVTFVSPRRALANSIK+DLEMD+ECKV KAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD Subject 4129 TFGAGKSFLHKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDDECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 4479
Range 2: 4128 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 110/118(93%) | 0/118(0%) | Minus/Minus |
Query 1 ESYVL*QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV 354 ESYVL*QGSPA EMKASLR+TRRHRSM*PGGNS TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAF TLHSSSISRS LIE ARARLGET VTNFPSDLFMKLL RKLFPAPNV Subject 4128 ESYVL*QGSPAREMKASLRMTRRHRSM*PGGNSWTSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFTTLHSSSISRSLLIEFARARLGETNVTNFPSDLFMKLLCRKLFPAPNV 4481
Range 3: 4305 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.5 bits(226) | 0.0 | 46/59(78%) | 0/59(0%) | Plus/Plus |
Query 178 CCYLRSFP*KGYRSKGWSLRDL**SSAISPWLH*SMSPCYSQ*RFHLTCW*SLSKHI*F 354 C YL S *+ YR KGWSLRDL**S AI PWLH SMS C+SQ*RFHL+CW*SLSKHI*F Subject 4305 CRYL*SLS*ESYRPKGWSLRDL**SPAIPPWLHRSMSSCHSQ*RFHLSCW*SLSKHI*F 4481
Range 4: 4128 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 30/37(81%) | 0/37(0%) | Plus/Plus |
Query 1 YIWGWKEFPIQELHEEI*RKICDFCFT*AGSSQFNQE 111 +IWGWKEFP QELHEEI*RKIC+ C T*AGSS+FNQ+ Subject 4128 HIWGWKEFPTQELHEEI*RKICNICLT*AGSSKFNQK 4238
Range 5: 4226 to 4261 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 9/12(75%) | 0/12(0%) | Plus/Plus |
Query 99 IQSRRTWKWMKS 134 IQS+ TWKWM S Subject 4226 IQSKGTWKWMMS 4261
Range 6: 4297 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 48/61(79%) | 0/61(0%) | Minus/Minus |
Query 170 IICALTRITSK*DESVTANNKET*INVTRGK*LNFIKDHAMTSL*TCNLSKENFEGNNIPA 352 IICALTRITSK DESVTAN+K+T*I+VTRG+*L+FIKDHAMTSL* CN K++F+GN+IPA Subject 4297 IICALTRITSKRDESVTANDKKT*IDVTRGE*LDFIKDHAMTSL*ACNFPKKDFKGNDIPA 4479
Range 7: 4129 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 36/42(86%) | 0/42(0%) | Minus/Minus |
Query 2 IHFQVLLD*IG*SPPR*NKSHKFSFRSLHEALV*ETLSSPKC 127 IHFQV D*I *SPPR*+K +KFSFRSLHEALV*ETLSSPKC Subject 4129 IHFQVPFD*IC*SPPR*DKCYKFSFRSLHEALV*ETLSSPKC 4254
Range 8: 4307 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 46/58(79%) | 0/58(0%) | Minus/Minus |
Query 180 NHMCFDKDHQQVR*KRHCE*QGDIDQCNQGEIAELHQRSRNDQPLDL*PF*GKLRR*Q 353 NHMCFDKDHQQ R*KRHCE*Q DID+CNQG IA LHQRSRNDQPL L* * +L+R*+ Subject 4307 NHMCFDKDHQQER*KRHCE*QEDIDRCNQGGIAGLHQRSRNDQPLGL*LS*ERLQR*R 4480
Range 9: 4130 to 4234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 30/35(86%) | 0/35(0%) | Minus/Minus |
Query 3 *LNWLEPA*VKQKSQIFLQIXXXXSCIGNSFQPQM 107 *LN LEPA*V+Q QIFLQISS*SSC+GNSFQPQM Subject 4130 *LNLLEPA*VRQMLQIFLQISS*SSCVGNSFQPQM 4234
Range 10: 4298 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.3 bits(195) | 0.0 | 48/61(79%) | 0/61(0%) | Plus/Plus |
Query 171 AGMLLPSKFSLERLQV*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSHLLVILVKAHMI 353 AGM LP K L +LQ *RLVIA*SLMK SY PLVT IYV L FAVTLSS LLVILVKAHMI Subject 4298 AGMSLPLKSFLGKLQA*RLVIA*SLMKSSYSPLVTSIYVFLSFAVTLSSLLLVILVKAHMI 4480
Grapevine rupestris stem pitting associated virus complete genome, isolate PG, genomic RNA
Sequence ID: HE591388.1 Length: 8725 Number of Matches: 10
Range 1: 4129 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.7 bits(591) | 0.0 | 112/117(96%) | 0/117(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKVAKAGKSKKEGWDVVTFEVFLRKV GLKAGHCVIFDEVQLFPPGYIDLCLL+IRSDAFISLAGDPCQSTYD Subject 4129 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDSCKVAKAGKSKKEGWDVVTFEVFLRKVAGLKAGHCVIFDEVQLFPPGYIDLCLLIIRSDAFISLAGDPCQSTYD 4479
Range 2: 4128 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.8 bits(482) | 0.0 | 99/118(84%) | 0/118(0%) | Minus/Minus |
Query 1 ESYVL*QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV 354 ESYVL* GSPASEMKASLRI +HRSM PGGN+ TSSKITQ PAF P TFLRKTSKVTTS PSFFDLPA ATL SSISRSFLIE A+ARLGETKVTN PSDLF+KLLY+KLFPAPNV Subject 4128 ESYVL*HGSPASEMKASLRIMSKHRSMYPGGNNWTSSKITQWPAFNPATFLRKTSKVTTSHPSFFDLPALATLQLSSISRSFLIEFAKARLGETKVTNLPSDLFIKLLYKKLFPAPNV 4481
Range 3: 4300 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.6 bits(150) | 0.0 | 32/60(53%) | 0/60(0%) | Minus/Minus |
Query 173 IICALTRITSK*DESVTANNKET*INVTRGK*LNFIKDHAMTSL*TCNLSKENFEGNNIP 352 IICALT IT K*+ES+T N++ *I+V+R K L+ IK+H + SL +CN S+EN + IP Subject 4300 IICALTWITGK*NESITTYNEQA*IDVSRRKQLDLIKNHTVASLQSCNFSEENLKSYYIP 4479
Range 4: 4129 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 22/42(52%) | 0/42(0%) | Minus/Minus |
Query 2 IHFQVLLD*IG*SPPR*NKSHKFSFRSLHEALV*ETLSSPKC 127 IHF+++ D*I *S NK ++F+ R H+ LV ETL SPKC Subject 4129 IHFKIIFD*IC*STSGRNKGYEFTLRPFHKTLVQETLPSPKC 4254
Range 5: 4305 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 30/59(51%) | 0/59(0%) | Plus/Plus |
Query 178 CCYLRSFP*KGYRSKGWSLRDL**SSAISPWLH*SMSPCYSQ*RFHLTCW*SLSKHI*F 354 C FP K R +GW L D ** +S W+H SM Y+ * FH TC *S+SKHI*F Subject 4305 CSNF*GFPQKSCRIEGWPLCDF**GPVVSSWIHRSMLAHYT**CFHFTCR*SMSKHI*F 4481
Range 6: 4128 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.3 bits(99) | 0.0 | 18/37(49%) | 0/37(0%) | Plus/Plus |
Query 1 YIWGWKEFPIQELHEEI*RKICDFCFT*AGSSQFNQE 111 YIWGW+EF +QE +E++* I + CF+ S+FNQ+ Subject 4128 YIWGWEEFLVQEFYEKV*G*IRNLCFSQTCFSKFNQK 4238
Range 7: 4322 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 29/53(55%) | 0/53(0%) | Minus/Minus |
Query 195 NHMCFDKDHQQVR*KRHCE*QGDIDQCNQGEIAELHQRSRNDQPLDL*PF*GK 353 NHMCFD DH+QV+*K H * ID+C Q E HQ+S + QP L F*GK Subject 4322 NHMCFDMDHRQVK*KHHYV**ASIDRCIQEETTGPHQKSHSGQPSILQLF*GK 4480
Range 8: 4130 to 4234 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 18/35(51%) | 0/35(0%) | Minus/Minus |
Query 3 *LNWLEPA*VKQKSQIFLQIXXXXSCIGNSFQPQM 107 *LN L+ KQ+ +I+ Q S*+SC NS QPQM Subject 4130 *LNLLKHVWEKQRLRIYPQTFS*NSCTRNSSQPQM 4234
Range 9: 4319 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 31/54(57%) | 0/54(0%) | Plus/Plus |
Query 192 KFSLERLQV*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSHLLVILVKAHMI 353 +FS E+LQ *RL * LM+ S F L T IY L+ V LS HL VI VKAHMI Subject 4319 RFSSEKLQD*RLATV*FLMRSSCFLLDTSIYACSLYVVMLSFHLPVIHVKAHMI 4480
Rupestris stem pitting associated virus strain SG1, complete genome
Sequence ID: AY881626.1 Length: 8742 Number of Matches: 9
Range 1: 4129 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.7 bits(591) | 0.0 | 113/117(97%) | 0/117(0%) | Plus/Plus |
Query 2 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 352 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK DLEMD+ CKVAKAGKSKKEGWDVVTFEVFLRKV+GLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD Subject 4129 TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKNDLEMDDGCKVAKAGKSKKEGWDVVTFEVFLRKVSGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD 4479
Range 2: 4128 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
228.3 bits(492) | 0.0 | 100/118(85%) | 0/118(0%) | Minus/Minus |
Query 1 ESYVL*QGSPASEMKASLRITRRHRSM*PGGNS*TSSKITQ*PAFRPVTFLRKTSKVTTSQPSFFDLPAFATLHSSSISRSFLIELARARLGETKVTNFPSDLFMKLLYRKLFPAPNV 354 ESYVL GSPASEMKASLR+T +HRS+ PGGN+*TSSKITQ PAF+P TFLRKTSKVTTS PSFFDLPA ATL SSISRSFLIE A+ARLGETKVTNFPSDLFMKLLY+KLFPAPNV Subject 4128 ESYVLWHGSPASEMKASLRMTSKHRSIYPGGNN*TSSKITQWPAFKPETFLRKTSKVTTSHPSFFDLPALATLQPSSISRSFLIEFAKARLGETKVTNFPSDLFMKLLYKKLFPAPNV 4481
Range 3: 4300 to 4479 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 31/60(52%) | 0/60(0%) | Minus/Minus |
Query 173 IICALTRITSK*DESVTANNKET*INVTRGK*LNFIKDHAMTSL*TCNLSKENFEGNNIP 352 I+CAL +T K*+ES+T +K+T*I+++RGK LN I+++ M SL T N SKEN + + IP Subject 4300 IVCALAWVTGK*NESITTYDKQT*IDISRGKQLNLIENYTMASLQTRNFSKENLKSHYIP 4479
Range 4: 4132 to 4254 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 23/41(56%) | 0/41(0%) | Minus/Minus |
Query 5 IHFQVLLD*IG*SPPR*NKSHKFSFRSLHEALV*ETLSSPK 127 IHF+++ D*I +K +KFSFR LHE L+ ETLSSPK Subject 4132 IHFKIIFD*ICQGSSGGDKGYKFSFRPLHETLIQETLSSPK 4254
Range 5: 4128 to 4238 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.5 bits(117) | 0.0 | 19/37(51%) | 0/37(0%) | Plus/Plus |
Query 1 YIWGWKEFPIQELHEEI*RKICDFCFT*AGSSQFNQE 111 ++WGWKEF + E HEE+*RKIC+ C +FNQ+ Subject 4128 HVWGWKEFLV*EFHEEV*RKICNLCLPQTSLGKFNQK 4238
Range 6: 4305 to 4481 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
56.1 bits(116) | 0.0 | 25/59(42%) | 0/59(0%) | Plus/Plus |
Query 178 CCYLRSFP*KGYRSKGWSLRDL**SSAISPWLH*SMSPCYSQ*RFHLTCW*SLSKHI*F 354 C FP*K + +GW L + * S +SPW++ SM C++ * FH TC * + +HI F Subject 4305 CSDF*GFP*KSFWFEGWPLCNFR*GSVVSPWIYRSMFACHT**CFHFTCR*PMPEHIRF 4481
Range 7: 4133 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
86.3 bits(182) | 0.0 | 60/116(52%) | 0/116(0%) | Plus/Plus |
Query 6 LGLERVSYTRAS*RDLKENXXXXXXXXXXXPIQSRRTWKWMKSXXXXXXXXXXXXAGMLLPSKFSLERLQV*RLVIA*SLMKFSYFPLVTLIYVSLLFAVTLSSHLLVILVKAHMI 353 LGLERVS R S*R LKENL* L IQS+ KWM + + +Q NQRR+ GM +FSLE+ V*RL I * M+FS FPL IYV L + V LS HL V +AH I Subject 4133 LGLERVSCIRVS*RGLKENL*PLSPPDEPWQIQSKMILKWMMAAKLLKQANQRRKGGM**LLRFSLEKFLV*RLAIV*FSMRFSCFPLDISIYVCLSYVVMLSFHLPVTHARAHTI 4480
Range 8: 4322 to 4480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 25/53(47%) | 0/53(0%) | Minus/Minus |
Query 195 NHMCFDKDHQQVR*KRHCE*QGDIDQCNQGEIAELHQRSRNDQPLDL*PF*GK 353 N MC H+QV+*K H *Q +ID+ QGE E H++ N QP + F*GK Subject 4322 NRMCSGMGHRQVK*KHHYV*QANIDRYIQGETTEPHRKLHNGQPSNQKLF*GK 4480
Nucleotide Sequence (404 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
320.9 | 1452.1 | 34% | 5.169e-86 | 70% | AB277784.1 | |
320.9 | 1693.5 | 30% | 5.169e-86 | 87% | AB277785.1 | |
320.9 | 1701.8 | 30% | 5.169e-86 | 87% | AM180417.1 | |
320.9 | 1665.6 | 34% | 5.169e-86 | 85% | AM180419.1 | |
320.9 | 1681.2 | 34% | 5.169e-86 | 86% | AM180421.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OE8
Sequence ID: AB277784.1 Length: 2876 Number of Matches: 6
Range 1: 2251 to 2652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 133/134(99%) | 0/134(0%) | Minus/Plus |
Query 1 DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 402 +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK Subject 2251 NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 2652
Range 2: 2301 to 2648 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 112/116(97%) | 0/116(0%) | Plus/Minus |
Query 5 VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 352 VGALL+PPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRW+FHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPI+VDLWELPTSEQ*RAIS+ATSNCTLSAMPD Subject 2301 VGALLIPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWIFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIKVDLWELPTSEQ*RAISMATSNCTLSAMPD 2648
Range 3: 2251 to 2652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 96/134(72%) | 0/134(0%) | Plus/Minus |
Query 1 FGWSSLNATLRFKRALICDSKEEVKGCKFLILIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKRTYQLVYCTFIHDI 402 F WSS ++TL FKR LICDS++EVKGCKF ILIK LGPIS W PRLQMD+PHDFCIVHAKST G+LPYNPS F*S+ +T+W A QG* LGA+NIRAVTC IY HIKL+A YA F+K T QL+YCT IHDI Subject 2251 FCWSSFDSTLWFKRTLICDSQKEVKGCKFFILIKPFLGPISWWYPRLQMDIPHDFCIVHAKSTQRGYLPYNPSNF*SIQITEWAFANQG*SLGASNIRAVTCDIYGHIKLYALCYA*FSKCTNQLIYCTLIHDI 2652
Range 4: 2250 to 2651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 94/134(70%) | 0/134(0%) | Minus/Plus |
Query 2 RCHG*RCNRRADTCVW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**E*EICSL*LLPWSHR*ERA*TEGWH*ESSNQ 403 +CHG* CNR AD+C+W I HS +R I*CG+RY TSLL*CW LP++N D Q+ IL* + IRN WDYKGG+H+ *ILHVLCKNRVE+PSGDGD+T *LGQE +**E*+ICSL*LL SHR*E A*T+GW+ +SSN+ Subject 2250 KCHG*GCNR*ADSCIWRIRHSRERTI*CGHRYRTSLL*CWKLPKINLDWQKPIL*SE*IRNCWDYKGGNHVA*ILHVLCKNRVEYPSGDGDTTS*LGQERV**E*KICSL*LLSGSHR*ECA*TKGWNQKSSNK 2651
Range 5: 2249 to 2647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.4 bits(455) | 0.0 | 97/133(73%) | 0/133(0%) | Minus/Plus |
Query 6 QMSWMKVQ*TS*YVRLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMRMRNLQPLTSSLESQMRARLNRRVALRELQ 404 QMSWM+VQ* S*+V L N A* +A NLMW *I HVTALML AP+ QP* A+ H V * DQK LGL*GR*P VDFACTMQKSCG SIWRRG+H LIGPR+ LMRM+NLQPLTS ESQMR RLN+RV +ELQ Subject 2249 QMSWMRVQ*MS*FVHLENQA*QRAYNLMWP*ISHVTALMLEAPKDQP*LAKAHSVI*IDQKLLGL*GR*PRCVDFACTMQKSCGISIWRRGYHQLIGPRKGLMRMKNLQPLTSFWESQMRVRLNQRVESKELQ 2647
Range 6: 2249 to 2647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.9 bits(443) | 0.0 | 95/133(71%) | 0/133(0%) | Plus/Minus |
Query 6 LELS*CHPSVQARSHL*LQGRSQRLQISHSH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQTHVSARLLHLHP*HL 404 LEL * HP VQA SHL*L RSQRLQI HSH* SWPN* V SPSPDG STRFLHSTCKIY W PPL*SQ FLI H+M C S L GS+QHQSSDV YL PHQI R LC I Q H SA LLH HP*HL Subject 2249 LELF*FHPLVQAHSHL*LPERSQRLQIFHSH*TLSWPN*LVVSPSPDGYSTRFLHSTCKIYATWLPPL*SQQFLIYSDHRMGFCQSRLIFGSFQHQSSDVRYLWPHQIVRSLLCLILQMHESAHLLHPHP*HL 2647
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hiz3
Sequence ID: AB277785.1 Length: 2876 Number of Matches: 6
Range 1: 2251 to 2652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 133/134(99%) | 0/134(0%) | Minus/Plus |
Query 1 DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 402 +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK Subject 2251 NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 2652
Range 2: 2251 to 2652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
290.2 bits(627) | 0.0 | 117/134(87%) | 0/134(0%) | Plus/Minus |
Query 1 FGWSSLNATLRFKRALICDSKEEVKGCKFLILIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKRTYQLVYCTFIHDI 402 F WSS N+TL KR LICDS+E++KGCK ILIKS LGP+S W PRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTK T QLVYCTFIHDI Subject 2251 FRWSSFNSTLWLKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKCTNQLVYCTFIHDI 2652
Range 3: 2250 to 2651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
277.4 bits(599) | 0.0 | 116/134(87%) | 0/134(0%) | Minus/Plus |
Query 2 RCHG*RCNRRADTCVW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**E*EICSL*LLPWSHR*ERA*TEGWH*ESSNQ 403 +CHG*RCNRRAD+C+W*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGD+T *LGQE I**E*++CSL* SHR*E A* +GW+*+SSN+ Subject 2250 KCHG*RCNRRADSCIW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*AKGWN*KSSNE 2651
Range 4: 2249 to 2647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
273.7 bits(591) | 0.0 | 116/133(87%) | 0/133(0%) | Plus/Minus |
Query 6 LELS*CHPSVQARSHL*LQGRSQRLQISHSH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQTHVSARLLHLHP*HL 404 LEL * HP QA SHL*L ++QRLQ HSH*I SWP+* V SPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQ H SARLLHLHP*HL Subject 2249 LELF*FHPLAQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQMHESARLLHLHP*HL 2647
Range 5: 2249 to 2647 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 117/133(88%) | 0/133(0%) | Minus/Plus |
Query 6 QMSWMKVQ*TS*YVRLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMRMRNLQPLTSSLESQMRARLNRRVALRELQ 404 QMSWMKVQ*TS*+V LVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRG+H L GPR+DLMRM++LQPL S ESQMR RL++RV L+ELQ Subject 2249 QMSWMKVQ*TS*FVHLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLSQRVELKELQ 2647
Range 6: 2301 to 2648 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 114/116(98%) | 0/116(0%) | Plus/Minus |
Query 5 VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 352 VGALL+PPFGSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD Subject 2301 VGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 2648
Rupestris stem pitting associated virus partial CP gene for coat protein, genomic RNA, isolate RSPaV SB 09
Sequence ID: AM180417.1 Length: 617 Number of Matches: 6
Range 1: 204 to 605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 133/134(99%) | 0/134(0%) | Minus/Plus |
Query 1 DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 402 +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK Subject 204 NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 605
Range 2: 204 to 605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.5 bits(632) | 0.0 | 118/134(88%) | 0/134(0%) | Plus/Minus |
Query 1 FGWSSLNATLRFKRALICDSKEEVKGCKFLILIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKRTYQLVYCTFIHDI 402 F WSS N+TL FKR LICDS+E++KGCK ILIKS LGP+S W PRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTK T QLVYCTFIHDI Subject 204 FCWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKCTNQLVYCTFIHDI 605
Range 3: 203 to 604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 117/134(87%) | 0/134(0%) | Minus/Plus |
Query 2 RCHG*RCNRRADTCVW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**E*EICSL*LLPWSHR*ERA*TEGWH*ESSNQ 403 +CHG*RCNRRAD+C+W*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGD+T *LGQE I**E*++CSL* SHR*E A*T+GW+*+SSN+ Subject 203 KCHG*RCNRRADSCIW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNK 604
Range 4: 202 to 600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
275.5 bits(595) | 0.0 | 117/133(88%) | 0/133(0%) | Plus/Minus |
Query 6 LELS*CHPSVQARSHL*LQGRSQRLQISHSH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQTHVSARLLHLHP*HL 404 LEL * HP VQA SHL*L ++QRLQ HSH*I SWP+* V SPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQ H SARLLHLHP*HL Subject 202 LELF*FHPLVQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQMHESARLLHLHP*HL 600
Range 5: 202 to 600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
269.1 bits(581) | 0.0 | 118/133(89%) | 0/133(0%) | Minus/Plus |
Query 6 QMSWMKVQ*TS*YVRLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMRMRNLQPLTSSLESQMRARLNRRVALRELQ 404 QMSWMKVQ*TS*+V LVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRG+H L GPR+DLMRM++LQPL S ESQMR RLN+RV L+ELQ Subject 202 QMSWMKVQ*TS*FVHLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQ 600
Range 6: 254 to 601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 114/116(98%) | 0/116(0%) | Plus/Minus |
Query 5 VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 352 VGALL+PPFGSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD Subject 254 VGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 601
Rupestris stem pitting associated virus partial CP gene for coat protein, genomic RNA, isolate RSPaV EM
Sequence ID: AM180419.1 Length: 670 Number of Matches: 6
Range 1: 204 to 605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 133/134(99%) | 0/134(0%) | Minus/Plus |
Query 1 DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 402 +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK Subject 204 NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 605
Range 2: 204 to 605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.2 bits(616) | 0.0 | 115/134(86%) | 0/134(0%) | Plus/Minus |
Query 1 FGWSSLNATLRFKRALICDSKEEVKGCKFLILIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKRTYQLVYCTFIHDI 402 F WSS N+TL FKR LICDS+E++KGCK ILIKS LGP+S W PRLQMDVPHDFCIVHAKS *CGHLP NPSYF*SV*VTKWTLAYQG*PLGATN+RAVTCYIYSHIKLHAFSYARFTK T QLVYCTFIHDI Subject 204 FRWSSFNSTLWFKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKSP*CGHLPDNPSYF*SV*VTKWTLAYQG*PLGATNVRAVTCYIYSHIKLHAFSYARFTKCTNQLVYCTFIHDI 605
Range 3: 203 to 604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.0 bits(583) | 0.0 | 114/134(85%) | 0/134(0%) | Minus/Plus |
Query 2 RCHG*RCNRRADTCVW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**E*EICSL*LLPWSHR*ERA*TEGWH*ESSNQ 403 +CHG*RCNRRAD+C+W*IWHS*KRAI*CGYRYSTSLL* W*LPEVNPDRQESIL*PKQIRNSWDY+GGDHIT ILHVLCKNRVEHPSGDGD+T *LGQE I**E*++CSL* SHR*E A*T+GW+*+SSN+ Subject 203 KCHG*RCNRRADSCIW*IWHS*KRAI*CGYRYSTSLL*RW*LPEVNPDRQESIL*PKQIRNSWDYQGGDHITEILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*TKGWN*KSSNE 604
Range 4: 254 to 601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 114/116(98%) | 0/116(0%) | Plus/Minus |
Query 5 VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 352 VGALL+PPFGSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD Subject 254 VGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 601
Range 5: 202 to 600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.1 bits(570) | 0.0 | 114/133(86%) | 0/133(0%) | Plus/Minus |
Query 6 LELS*CHPSVQARSHL*LQGRSQRLQISHSH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQTHVSARLLHLHP*HL 404 LEL * HP VQA SHL*L ++QRLQ HSH*I SWP+* V SPSPDGCSTRFLHSTCKI VMWSPP *SQLFLICLGHKMDSCLSGLTSGSYQ QSSDVLYL*PHQIARFQLCQIHQ H SARLLHLHP*HL Subject 202 LELF*FHPLVQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKISVMWSPP**SQLFLICLGHKMDSCLSGLTSGSYQRQSSDVLYL*PHQIARFQLCQIHQMHESARLLHLHP*HL 600
Range 6: 202 to 600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.9 bits(563) | 0.0 | 115/133(86%) | 0/133(0%) | Minus/Plus |
Query 6 QMSWMKVQ*TS*YVRLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMRMRNLQPLTSSLESQMRARLNRRVALRELQ 404 QMSWMKVQ*TS*+V LVNLA*LKACNLMWL*I*HVTAL LVAPRGQP**ARVHFVT*TDQK*LGL GR*PHY DFACTMQKSCGTSIWRRG+H L GPR+DLMRM++LQPL S ESQMR RLN+RV L+ELQ Subject 202 QMSWMKVQ*TS*FVHLVNLA*LKACNLMWL*I*HVTALTLVAPRGQP**ARVHFVT*TDQK*LGLSGR*PHYGDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLNQRVELKELQ 600
Rupestris stem pitting associated virus partial CP gene for coat protein, genomic RNA, isolate RSPaV ND
Sequence ID: AM180421.1 Length: 670 Number of Matches: 6
Range 1: 204 to 605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.9 bits(694) | 0.0 | 133/134(99%) | 0/134(0%) | Minus/Plus |
Query 1 DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 402 +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK Subject 204 NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK 605
Range 2: 204 to 605 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
289.7 bits(626) | 0.0 | 116/134(87%) | 0/134(0%) | Plus/Minus |
Query 1 FGWSSLNATLRFKRALICDSKEEVKGCKFLILIKSLLGPISGWNPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNIRAVTCYIYSHIKLHAFSYARFTKRTYQLVYCTFIHDI 402 F WSS N+TL KR LICDS+E++KGCK ILIKS LGP+S W PRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATN+RAVTCYIYSHIKLHAFSYARFTK T QLVYCTFIHDI Subject 204 FRWSSFNSTLWLKRTLICDSQEKIKGCKLFILIKSFLGPVSWWYPRLQMDVPHDFCIVHAKST*CGHLPYNPSYF*SV*VTKWTLAYQG*PLGATNVRAVTCYIYSHIKLHAFSYARFTKCTNQLVYCTFIHDI 605
Range 3: 203 to 604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.9 bits(587) | 0.0 | 115/134(86%) | 0/134(0%) | Minus/Plus |
Query 2 RCHG*RCNRRADTCVW*IWHS*KRAI*CGYRYSTSLL*CW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDSTR*LGQEGI**E*EICSL*LLPWSHR*ERA*TEGWH*ESSNQ 403 +CHG*RCNRRAD+C+W*IWHS*KRAI*CGYRYSTSLL* W*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGD+T *LGQE I**E*++CSL* SHR*E A* +GW+*+SSN+ Subject 203 KCHG*RCNRRADSCIW*IWHS*KRAI*CGYRYSTSLL*RW*LPEVNPDRQESIL*PKQIRNSWDYKGGDHIT*ILHVLCKNRVEHPSGDGDTTS*LGQERI**E*KVCSL*FFLGSHR*ECA*AKGWN*KSSNE 604
Range 4: 202 to 600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
270.0 bits(583) | 0.0 | 115/133(86%) | 0/133(0%) | Plus/Minus |
Query 6 LELS*CHPSVQARSHL*LQGRSQRLQISHSH*IPSWPN*RVESPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQHQSSDVLYL*PHQIARFQLCQIHQTHVSARLLHLHP*HL 404 LEL * HP QA SHL*L ++QRLQ HSH*I SWP+* V SPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQ QSSDVLYL*PHQIARFQLCQIHQ H SARLLHLHP*HL Subject 202 LELF*FHPLAQAHSHL*LPRKNQRLQTFHSH*ILSWPS*LVVSPSPDGCSTRFLHSTCKIYVMWSPPL*SQLFLICLGHKMDSCLSGLTSGSYQRQSSDVLYL*PHQIARFQLCQIHQMHESARLLHLHP*HL 600
Range 5: 254 to 601 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 114/116(98%) | 0/116(0%) | Plus/Minus |
Query 5 VGALLMPPFGSSALSSVTPRKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 352 VGALL+PPFGSSALSSVTP+KKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD Subject 254 VGALLIPPFGSSALSSVTPKKKSKAANFSFSLNPFLAQLAGGIPVSRWMFHTIFA*YMQNLRNVVTSLIIPAISDLFRSQNGLLPIRVDLWELPTSEQ*RAISIATSNCTLSAMPD 601
Range 6: 202 to 600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.1 bits(570) | 0.0 | 116/133(87%) | 0/133(0%) | Minus/Plus |
Query 6 QMSWMKVQ*TS*YVRLVNLA*LKACNLMWL*I*HVTALMLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGFHPLIGPRRDLMRMRNLQPLTSSLESQMRARLNRRVALRELQ 404 QMSWMKVQ*TS*+V LVNLA*LKACNLMWL*I*HVTAL LVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRG+H L GPR+DLMRM++LQPL S ESQMR RL++RV L+ELQ Subject 202 QMSWMKVQ*TS*FVHLVNLA*LKACNLMWL*I*HVTALTLVAPRGQP**ARVHFVT*TDQK*LGL*GR*PHYVDFACTMQKSCGTSIWRRGYHQLTGPRKDLMRMKSLQPLIFSWESQMRVRLSQRVELKELQ 600
Nucleotide Sequence (468 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
279.2 | 1480.0 | 28% | 2.322e-73 | 78% | KX274275.1 | |
285.6 | 1575.3 | 27% | 2.694e-75 | 87% | AY368590.1 | |
268.7 | 902.8 | 17% | 3.42e-70 | 44% | KX958435.1 | |
268.7 | 844.5 | 29% | 3.454e-70 | 42% | KR054734.1 | |
265.9 | 847.8 | 28% | 2.299e-69 | 40% | KT948710.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 5188 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
279.2 bits(603) | 0.0 | 113/113(100%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP Subject 5188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 5526
Range 2: 5190 to 5525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.1 bits(570) | 0.0 | 109/112(97%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 GTFERKVSSKNFPYGFARLNFAAST*G EN RRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PH TSRCSFNAIFPTHLALVDSKLLNGIWVLN Subject 5190 GTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSKLLNGIWVLN 5525
Range 3: 5143 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.5 bits(536) | 0.0 | 103/128(80%) | 0/128(0%) | Minus/Minus |
Query 85 WNLRKESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 468 WNL KESVK*+LP+WLCAP FCSF+LRL KF TFP+ HE+G+ I+TFM WIYAFKSFT +AQLLASSTP+FIKELLGRFITTSHFTVFLQ HLSNPPGP FQ+T*WDMGFKPFLI FRLK LN AI Subject 5143 WNL*KESVK*KLPIWLCAP*FCSFDLRL*KFKTFPNSHEKGH*IITFMSWIYAFKSFTCIAQLLASSTPVFIKELLGRFITTSHFTVFLQRHLSNPPGPGRFQVT*WDMGFKPFLI*TFRLKLLNFAI 5526
Range 4: 5141 to 5524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
245.8 bits(530) | 0.0 | 103/128(80%) | 0/128(0%) | Minus/Minus |
Query 83 EPSKGKCQVRTSRMALRASILQLQLEA*KILDVS*RP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVGSFHNHIALHGVPSMPSFQPTWPLLIPNYLMGYGF*TIPHSSIQTQVPQPRNP 466 EP KGKCQV+TS MALRA ILQL+LEA KI DVS*+P* R N YLY LDICFQIFH CSIARFFHT VHQRTVGSFHNHI+LHGVPS PSFQPTWP IP+YLMGYGF*TIPH +IQTQ PQ RNP Subject 5141 EPLKGKCQVKTSHMALRALILQLRLEALKI*DVS*QP*ERSLNHYLYVLDICFQIFHMHCSIARFFHTCVHQRTVGSFHNHISLHGVPSTPSFQPTWPWSIPSYLMGYGF*TIPHLNIQTQAPQLRNP 5524
Range 5: 5144 to 5524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 103/127(81%) | 0/127(0%) | Plus/Plus |
Query 86 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSSYLTLSFRRF 466 IA+LR+LSLN +MRNGLKPISH*V WN+ GPGGLERW *RNTVK DVVMKRPNSSLMN GVEEASN*A VKDLKAYIQ IKV I+*P SW GNV NF SLK KLQN*GAQSH GS YLTLSF+RF Subject 5144 IAKLRSLSLNVQMRNGLKPISH*VTWNRPGPGGLERWR*RNTVK*DVVMKRPNSSLMNTGVEEASN*AMHVKDLKAYIQDIKVMIQ*PFSWLLGNVLNFQSLKSKLQN*GAQSHMGSFYLTLSFQRF 5524
Range 6: 5130 to 5525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.2 bits(459) | 0.0 | 103/132(78%) | 0/132(0%) | Plus/Plus |
Query 72 WVCLGLRG*GT*V*MLE*GMV*NPYPIK*FGINKGQVGWKDGIEGTP*SAMWL*NDPTVL**T*VWKKRAIEQRV*KI*KHISKA*R*RFGNLPHGRQETSKIF*ASS*SCKIEARKAIREVLT*HFPFEGS 467 W GLR *G *V*M +*GMV*NPYPIK* GI++GQVGWKDG+EGTP*S MWL*NDPTVL**T VWKKRAIEQ +*KI*KHISK *R* F +L HG ETS IF ASS SCKI+ARKAI EV T*HFPF+GS Subject 5130 WPR*GLRS*GA*V*MFK*GMV*NPYPIK*LGIDQGQVGWKDGVEGTP*SEMWL*NDPTVL**TQVWKKRAIEQCM*KI*KHISKT*R**FSDLSHGC*ETS*IFKASSRSCKIKARKAIWEVFT*HFPFKGS 5525
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 5143 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
285.6 bits(617) | 0.0 | 114/128(89%) | 0/128(0%) | Minus/Minus |
Query 85 WNLRKESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 468 W+LRKESVK*+ P+WLCAPQFCSFNLRLR+F TFPD HEEG+ I+TFM WIYAFKSFT +AQ LASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI Subject 5143 WDLRKESVK*KFPIWLCAPQFCSFNLRLREFKTFPDSHEEGH*IITFMSWIYAFKSFTCIAQFLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 5526
Range 2: 5188 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
277.4 bits(599) | 0.0 | 112/113(99%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSE+LSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP Subject 5188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEKLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 5526
Range 3: 5141 to 5521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
271.9 bits(587) | 0.0 | 111/127(87%) | 0/127(0%) | Minus/Minus |
Query 83 PSKGKCQVRTSRMALRASILQLQLEA*KILDVS*RP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVGSFHNHIALHGVPSMPSFQPTWPLLIPNYLMGYGF*TIPHSSIQTQVPQPRNP 463 PSKGKCQV+ S MALRASILQLQLEA +I DVS*+P*GR N YLY LDICFQIFH CSI+RFFHTYVHQRTVGSFHNHI+LHGVPSMPSFQPTWPLLIP+YLMGYGF*TIPHSSIQTQVPQPRNP Subject 5141 PSKGKCQVKISHMALRASILQLQLEASRI*DVS*QP*GRSLNHYLYVLDICFQIFHMHCSISRFFHTYVHQRTVGSFHNHISLHGVPSMPSFQPTWPLLIPDYLMGYGF*TIPHSSIQTQVPQPRNP 5521
Range 4: 5190 to 5525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
257.7 bits(556) | 0.0 | 107/112(96%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 GTFERKVSSKNFPYGFARLNFAAST*G EN RRFLTAMRKVTESLPLCLGYMLSNLSHALLN SLLPHLCSSKNCWVVS*PH TSRCSFNAIFPTHLALVDS+LLNGIWVLN Subject 5190 GTFERKVSSKNFPYGFARLNFAAST*GFENLRRFLTAMRKVTESLPLCLGYMLSNLSHALLNFSLLPHLCSSKNCWVVS*PHLTSRCSFNAIFPTHLALVDSRLLNGIWVLN 5525
Range 5: 5144 to 5521 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.4 bits(538) | 0.0 | 112/126(89%) | 0/126(0%) | Plus/Plus |
Query 86 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSSYLTLSFRR 463 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK DVVMKRPNSSLMNIGVEEA N*A VKDLKAYIQ IKV I+*PSSW SGNV N SLKLKLQN*GAQSH G+ YLTLSFRR Subject 5144 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVK*DVVMKRPNSSLMNIGVEEARN*AMHVKDLKAYIQDIKVMIQ*PSSWLSGNVLNSRSLKLKLQN*GAQSHMGNFYLTLSFRR 5521
Range 6: 5142 to 5522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.4 bits(503) | 0.0 | 111/127(87%) | 0/127(0%) | Plus/Plus |
Query 84 GLRG*GT*V*MLE*GMV*NPYPIK*FGINKGQVGWKDGIEGTP*SAMWL*NDPTVL**T*VWKKRAIEQRV*KI*KHISKA*R*RFGNLPHGRQETSKIF*ASS*SCKIEARKAIREVLT*HFPFEG 464 GLRG*GT*V*MLE*GMV*NPYPIK* GINKGQVGWKDGIEGTP*S MWL*NDPTVL**T*VWKKR IEQ +*KI*KHISK *R* F +LPHG QETS I ASS*SCKIEARKAI E+ T*HFPFEG Subject 5142 GLRG*GT*V*MLE*GMV*NPYPIK*SGINKGQVGWKDGIEGTP*SEMWL*NDPTVL**T*VWKKREIEQCM*KI*KHISKT*R**FSDLPHGCQETS*ILEASS*SCKIEARKAIWEIFT*HFPFEG 5522
Grapevine rupestris stem pitting associated virus isolate CS BR, complete genome
Sequence ID: KX958435.1 Length: 8743 Number of Matches: 7
Range 1: 5189 to 5527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 109/113(96%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 5527
Range 2: 5191 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.1 bits(439) | 0.0 | 89/112(79%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 GTF+RKVSS+NFP GFARL+FAAST G ENFRRF TA++KV ESLPLCLG MLS S ALLNCS +P LCSSKNC VVS PHRTSRCSF AIFPTHLALVDSKLL G+ VLN Subject 5191 GTFDRKVSSRNFP*GFARLSFAASTCGFENFRRFRTAIKKVMESLPLCLG*MLSKRSQALLNCSPIPPLCSSKNC*VVSYPHRTSRCSFKAIFPTHLALVDSKLLKGMCVLN 5526
Range 3: 5144 to 5527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 61/128(48%) | 0/128(0%) | Minus/Minus |
Query 85 WNLRKESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 468 W+ R ESVK E P+ LC P SF+L L K F DGH +G ++ + I AFK+FT +A LLA S P+FI+ELL FI TS+ TV LQ H NP P * QI + F+PF I RLK N + Subject 5144 WDFR*ESVKQEFPIRLCTP*LRSFHLWL*KLQAFSDGH*KGNGVIALVSRINAFKTFTGIA*LLAHSPPVFIEELLSCFIPTSYLTVLLQGHFPNPSSPG*LQIAQGYVCFEPFFI*TLRLKLFNFTV 5527
Range 4: 5151 to 5522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 60/124(48%) | 0/124(0%) | Plus/Plus |
Query 92 RLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSSYLTLSFRR 463 +L++LSL+ +M+NG K * IW+Q G GL +W *R+TV+ DV MK+ ++S MN G E ASN*A V LKA+I + P WPS N *+F S + KL++*G QS G+S LTLS+R+ Subject 5151 KLKSLSLSVQMKNGSKHTYP*AIWSQPGLDGLGKWP*RSTVRYDVGMKQLSNSSMNTGGEWASN*AMPVNVLKAFILDTRAMTPLPF*WPSENA*SFQSHRWKLRS*GVQSLMGNSCLTLSYRK 5522
Range 5: 5143 to 5379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 37/79(47%) | 0/79(0%) | Plus/Plus |
Query 84 GLRG*GT*V*MLE*GMV*NPYPIK*FGINKGQVGWKDGIEGTP*SAMWL*NDPTVL**T*VWKKRAIEQRV*KI*KHIS 320 GL * *V*+ +* MV N + ++ FG+N+G +GW++G+EG P* MW+*N+ +L *T RAI+Q +* *KH+S Subject 5143 GL*S*RA*V*VFK*RMVQNTHTLEQFGVNQG*MGWENGLEGAP*GTMWV*NNSAILR*TQGGNGRAIKQCL*TF*KHLS 5379
Range 6: 5413 to 5520 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 16/36(44%) | 0/36(0%) | Plus/Plus |
Query 354 HGRQETSKIF*ASS*SCKIEARKAIREVLT*HFPFE 461 +GR +T ++F A+ SC+ +A KA+ E+ *HFP E Subject 5413 NGRPKTPEVFKATGGSCEAKACKALWEIPA*HFPIE 5520
Range 7: 5142 to 5378 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.1 bits(162) | 0.0 | 38/79(48%) | 0/79(0%) | Minus/Minus |
Query 83 DICFQIFHTRCSIARFFHTYVHQRTVGSFHNHIALHGVPSMPSFQPTWPLLIPNYLMGYGF*TIPHSSIQTQVPQPRNP 319 D CFQ H C IAR F VH+R FH HI HG PS P QP P L PN F*TI H + QTQ Q +P Subject 5142 DKCFQNVHRHCLIARPFPPCVHRRIAELFHTHIVPHGAPSRPFSQPI*PWLTPNCSRVCVF*TILHLNTQTQALQLHSP 5378
Grapevine rupestris stem pitting associated virus isolate GRSPaV JF, complete genome
Sequence ID: KR054734.1 Length: 8753 Number of Matches: 6
Range 1: 5188 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 109/113(96%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP Subject 5188 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 5526
Range 2: 5190 to 5525 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 86/112(77%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 GTF++ VSS+NFP GFARL+FAAST G ENF+RF TA++KV ESLPLCLG MLSNLS ALLNCS +P LCSSKNC VVS P RTSRCSF AIFPTHLALVDS+LL G+ VLN Subject 5190 GTFDKNVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVMESLPLCLG*MLSNLSQALLNCSPIPPLCSSKNC*VVSYPQRTSRCSFKAIFPTHLALVDSRLLKGMCVLN 5525
Range 3: 5143 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 56/128(44%) | 0/128(0%) | Minus/Minus |
Query 85 WNLRKESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 468 WN ++ VK + + LCAP CS +L L K *T PD H + I+T M + AFKSFT +A LLA + +FI+ELL I +H TV Q H +P P * QI + F+PF I RLK N I Subject 5143 WNF*QKCVKQKFSIRLCAP*LCSLHLWL*KL*TLPDSH*KSDGIITLMSRVNAFKSFTSIA*LLAHTPSVFIEELLSCLIPATHLTVLFQGHFPDPSSPG*LQIAQGYVCFEPFFI*TLRLKLFNFTI 5526
Range 4: 5144 to 5524 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.9 bits(216) | 0.0 | 57/127(45%) | 0/127(0%) | Plus/Plus |
Query 86 IARLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSSYLTLSFRRF 466 I +L++LSL+ +M+NG K * IW+Q G G +W *++TV+C M++ +SS MN ASN*A VKDLKA+ I+V I W SG+V*+F S K +LQ+*GAQS + LT ++F Subject 5144 IVKLKSLSLSVQMKNGSKHTYP*AIWSQPGLDGSGKWP*KSTVRCVAGMRQLSSSSMNTEGVWASN*AMLVKDLKAFTLDIRVMIPSLF*WLSGSV*SFQSHKWRLQS*GAQSLMENFCLTHFCQKF 5524
Range 5: 5144 to 5506 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.8 bits(181) | 0.0 | 51/121(42%) | 0/121(0%) | Minus/Minus |
Query 86 CQVRTSRMALRASILQLQLEA*KILDVS*RP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVGSFHNHIALHGVPSMPSFQPTWPLLIPNYLMGYGF*TIPHSSIQTQVPQPRN 448 CQ ALRA LQ L A K L+ S +P + N Y Y CFQIFH C IAR + VH+RT H A HG S P +P P L P+ F*TI H + QTQ Q N Subject 5144 CQAEIFHKALRALALQPPLVALKTLNASGQPLKK*WNHYPYV*GKCFQIFHKHCLIARPYPLCVHRRTAELSHTRNAPHGALSRPFSRPI*PWLTPDCSRVCVF*TILHLNTQTQALQLHN 5506
Range 6: 5163 to 5507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.8 bits(159) | 0.0 | 48/115(42%) | 0/115(0%) | Plus/Plus |
Query 105 *V*MLE*GMV*NPYPIK*FGINKGQVGWKDGIEGTP*SAMWL*NDPTVL**T*VWKKRAIEQRV*KI*KHISKA*R*RFGNLPHGRQETSKIF*ASS*SCKIEARKAIREVLT*H 449 *V*+ +* MV N + ++ G+N+G +G ++G+E P* A+ +*++ VL *T RAI+Q +*KI*KH+ * * F + +G E K+F A+S CK +ARKA+ ++ *H Subject 5163 *V*VFK*RMVQNTHTLEQSGVNQG*MGRENGLERAP*GALRV*DNSAVLR*TQRGYGRAIKQCL*KI*KHLP*T*G**FHHFFNGCPEAFKVFKATSGGCKAKARKALWKISA*H 5507
Grapevine rupestris stem pitting associated virus isolate VF1, partial genome
Sequence ID: KT948710.1 Length: 8716 Number of Matches: 7
Range 1: 5189 to 5527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
265.9 bits(574) | 0.0 | 108/113(96%) | 0/113(0%) | Plus/Plus |
Query 130 WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 468 WFKTHIPLSNLESTRARWVGKMALKE+REVRCGYETTQQFFDEHR G EQLSNACERFESIYPRHKGNDS+TFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP Subject 5189 WFKTHIPLSNLESTRARWVGKMALKEYREVRCGYETTQQFFDEHRGGMGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP 5527
Range 2: 5191 to 5526 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 86/112(77%) | 0/112(0%) | Minus/Minus |
Query 132 GTFERKVSSKNFPYGFARLNFAAST*GLENFRRFLTAMRKVTESLPLCLGYMLSNLSHALLNCSLLPHLCSSKNCWVVS*PHRTSRCSFNAIFPTHLALVDSKLLNGIWVLN 467 GTF+RKVSS+NFP GFARL+FAAST G ENF+RF TA++KV ESLPLCLG MLS S ALLNCS +P LCSSKNC VVS PHRTSR SF AIFPTHLALVDS+LL G+ VLN Subject 5191 GTFDRKVSSRNFP*GFARLSFAASTCGFENFKRFRTAIKKVIESLPLCLG*MLSKRSQALLNCSPIPPLCSSKNC*VVSYPHRTSRYSFKAIFPTHLALVDSRLLKGMCVLN 5526
Range 3: 5144 to 5527 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.5 bits(250) | 0.0 | 56/128(44%) | 0/128(0%) | Minus/Minus |
Query 85 WNLRKESVK*ELPVWLCAPQFCSFNLRLRKF*TFPDGHEEGYRIVTFMPWIYAFKSFTRVAQLLASSTPMFIKELLGRFITTSHFTVFLQCHLSNPPGPC*FQIT*WDMGFKPFLIRAFRLKFLNLAI 468 W+ E VK E P+ LC P SF+L L + FPDGH++G R++ M I A K+FT +AQLLA P+FI+ELL I TS+ TV Q H NP P * QI + F+PF I K N + Subject 5144 WDF**EGVKQEFPIRLCTP*LRSFHLWL*ELQAFPDGHQKGDRVIALMSRINALKTFTSIAQLLAHPPPVFIEELLSCLIPTSYLTVLFQGHFPNPSSPG*LQIAQRYVCFEPFFI*TLSFKLFNFTV 5527
Range 4: 5151 to 5522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.1 bits(223) | 0.0 | 54/124(44%) | 0/124(0%) | Plus/Plus |
Query 92 RLRNLSLNARMRNGLKPISH*VIWNQQGPGGLERWH*RNTVKCDVVMKRPNSSLMNIGVEEASN*ATRVKDLKAYIQGIKVTIR*PSSWPSGNV*NFLSLKLKLQN*GAQSHTGSSYLTLSFRR 463 +L++L L+ +M+NG K * IW+Q G GL +W *++TV+ DV M++ ++S MN G ASN*A V L+A+I I+ P WPSGN *+ S + KL++*G QS G+S LT S+++ Subject 5151 KLKSLKLSVQMKNGSKHTYL*AIWSQPGLDGLGKWP*KSTVRYDVGMRQLSNSSMNTGGGWASN*AMLVNVLRAFILDIRAMTLSPF*WPSGNA*SSQSHRWKLRS*GVQSLMGNSCLTPSYQK 5522
Range 5: 5154 to 5513 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 48/120(40%) | 0/120(0%) | Minus/Minus |
Query 95 GKCQVRTSRMALRASILQLQLEA*KILDVS*RP*GRLPNRYLYALDICFQIFHTRCSIARFFHTYVHQRTVGSFHNHIALHGVPSMPSFQPTWPLLIPNYLMGYGF*TIPHSSIQTQVPQ 454 G+CQ S AL A QL A + VS RP R + Y D C Q H CSIAR VH+R H HI HG S P QP P L P+ F*TI H + Q Q Q Subject 5154 GRCQAGISHKALHALASQLPPVALRTSSVSGRPSKR**SHCPYV*DKCSQNVHKHCSIARPSPPCVHRRIAELSHTHIVPHGTLSRPFSQPI*PWLTPDCSKVCVF*TILHLNTQLQALQ 5513
Range 6: 5170 to 5379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 29/70(41%) | 0/70(0%) | Plus/Plus |
Query 111 *MLE*GMV*NPYPIK*FGINKGQVGWKDGIEGTP*SAMWL*NDPTVL**T*VWKKRAIEQRV*KI*KHIS 320 *+ +* MV N + + G+N+G +GW++G+E P* MW+*++ +L *T RAIEQ +* *+H+S Subject 5170 *VFK*RMVQNTHTFEQSGVNQG*MGWENGLERVP*GTMWV*DNSAILR*TQGGDGRAIEQCL*TF*EHLS 5379
Nucleotide Sequence (348 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
257.2 | 1288.5 | 47% | 5.965e-67 | 77% | AY368590.1 | |
251.7 | 1289.5 | 41% | 2.653e-65 | 77% | AB277783.1 | |
248.0 | 1251.4 | 47% | 3.422e-64 | 76% | KX274275.1 | |
219.6 | 835.0 | 46% | 1.22e-55 | 48% | EF105294.1 | |
218.7 | 860.2 | 29% | 2.302e-55 | 46% | KX274274.1 |
Alignments
Rupestris stem pitting associated virus strain Syrah, complete genome
Sequence ID: AY368590.1 Length: 8742 Number of Matches: 6
Range 1: 7009 to 7353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
257.2 bits(555) | 0.0 | 103/115(90%) | 0/115(0%) | Minus/Plus |
Query 2 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSTTCKLGQNCHSVDDRLGHWLGAAFPKKVKFAIL 346 I GSPFEL VEGVLICFGKEAV+LA AHNS+FKLPCEVRG TFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*+AFS TC+LGQNC+S+DDRLGHWLGAAFPKKVKFA+L Subject 7009 ITGSPFELDVEGVLICFGKEAVNLAAAHNSDFKLPCEVRGTTFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*DAFSATCELGQNCYSIDDRLGHWLGAAFPKKVKFAVL 7353
Range 2: 7008 to 7352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.0 bits(513) | 0.0 | 101/115(88%) | 0/115(0%) | Plus/Minus |
Query 3 SMANLTFLGNAAPSQCPSLSSTE*QFWPNLQVVEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANSNGEPII 347 S ANLTFLGNAAPSQCPSLSS E*QFWPN QV EKA HCM+INFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNV PRTSQGSLK ELCA AK TAS PKQI TPST+NSNGEP+I Subject 7008 STANLTFLGNAAPSQCPSLSSME*QFWPNSQVAEKASHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVVPRTSQGSLKSELCAAAKLTASLPKQISTPSTSNSNGEPVI 7352
Range 3: 7009 to 7353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 96/115(83%) | 0/115(0%) | Plus/Minus |
Query 2 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIMRNRQINCLLSKTN*DALHS*LKR*ANN 346 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHD QLL MSCCSNVEPVLIIRGRIS*FQ*G+NIKC TSYLTRKFE+ IMR+ Q+NCLL+K N* L+ LK * N Subject 7009 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDDQLLPMSCCSNVEPVLIIRGRIS*FQ*GNNIKCSTSYLTRKFEI*IMRSCQVNCLLAKAN*HTLNIQLKW*TCN 7353
Range 4: 7007 to 7354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.3 bits(470) | 0.0 | 98/116(84%) | 0/116(0%) | Minus/Plus |
Query 1 *LLAHRLS*LWRAS*FVLERRQLIWRLRIIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS 348 *L H LS + R *F L RRQL W+LRII SNFLVRYEV HLML PY*NQEIRPLMISTGSTLLQQDI RS* SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS Subject 7007 *LQVHHLSWMLRVC*FALARRQLTWQLRIIQISNFLVRYEVLHLMLLPY*NQEIRPLMISTGSTLLQQDIGRS*SSCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS 7354
Range 5: 7007 to 7354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
191.7 bits(412) | 0.0 | 92/116(79%) | 0/116(0%) | Plus/Minus |
Query 1 *VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SWNYAQPPNQLPPFQNKLGRPPQLTQTVSQ*S 348 *V QI*LS*EMQHQANAQAYRQ S+SFGPI RLLKRH TA* STS YVLLQQCRTSAYHQRSDLLISIR*QHQM +LVPHKEV*+ NYAQ P+ LPP Q+KL P TQ V+ *S Subject 7007 *VRQI*LS*EMQHQANAQAYRQWSNSFGPIRRLLKRHLTA**STSSYVLLQQCRTSAYHQRSDLLISIR*QHQM*YLVPHKEV*NLNYAQLPS*LPPCQSKLAHPQHPTQMVNL*S 7354
Range 6: 7008 to 7280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.7 bits(351) | 0.0 | 70/91(77%) | 0/91(0%) | Minus/Plus |
Query 75 DYWLTV*VSCGGRPNLFWKGGS*FGGCA*FQLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFNNLQIGPKL 347 DY T+*V C G NL W+GGS* G CA*F+ QTSL*GTR +I*CC+LIEIKRSDL***ALVLHCCNKT*+EVD+HAV+CLF+NL+IGPKL Subject 7008 DYRFTI*VGC*GCANLLWQGGS*LGSCA*FRFQTSL*GTRYYI*CCYLIEIKRSDL***ALVLHCCNKT*EEVDHHAVRCLFSNLRIGPKL 7280
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: OB1
Sequence ID: AB277783.1 Length: 2876 Number of Matches: 7
Range 1: 1265 to 1609 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
251.7 bits(543) | 0.0 | 103/115(90%) | 0/115(0%) | Minus/Plus |
Query 2 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSTTCKLGQNCHSVDDRLGHWLGAAFPKKVKFAIL 346 I GSPFEL VEGVLICFGKEAVDLA AHNS+FKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFS TC+LGQN H +DD LGHWL A+FPKKVKFAIL Subject 1265 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPIDDWLGHWLSASFPKKVKFAIL 1609
Range 2: 1264 to 1608 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.0 bits(500) | 0.0 | 100/115(87%) | 0/115(0%) | Plus/Minus |
Query 3 SMANLTFLGNAAPSQCPSLSSTE*QFWPNLQVVEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANSNGEPII 347 SMANLTFLGN A SQCPS SS * FWPN QV EKAFHCM+INFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLK ELCA AKSTAS PKQI TPST+NSNGEP+I Subject 1264 SMANLTFLGNEALSQCPSQSSMG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 1608
Range 3: 1263 to 1610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
212.3 bits(457) | 0.0 | 97/116(84%) | 0/116(0%) | Minus/Plus |
Query 1 *LLAHRLS*LWRAS*FVLERRQLIWRLRIIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS 348 *L A LS + R *F L RRQLI RLRIIP SNFLVRYEV HLML PY*NQ IRP MISTGSTLLQQDIER+* SCSEMPFQQPANWAKT+TPLTIGLGIGLVLHFLRKSNLPYS Subject 1263 *LQARHLSWMLRVC*FALARRQLI*RLRIIPISNFLVRYEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYS 1610
Range 4: 1280 to 1609 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.7 bits(447) | 0.0 | 91/110(83%) | 0/110(0%) | Plus/Minus |
Query 2 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIMRNRQINCLLSKTN*DALHS*LK 331 EYGKFDFLRK STKPMPKPIVNGV VLAQFAGC*KGISLHD Q LSMSCCSNVEPVLII GRI *FQ*G+NIKC TSYLTRKFE+GIMR+R INCLL+K N L+ LK Subject 1280 EYGKFDFLRK*STKPMPKPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSYLTRKFEIGIMRSR*INCLLAKANQHTLNIQLK 1609
Range 5: 1263 to 1610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 91/116(78%) | 0/116(0%) | Plus/Minus |
Query 1 *VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SWNYAQPPNQLPPFQNKLGRPPQLTQTVSQ*S 348 *VWQI*LS*EM+H ANAQA RQ DSFGPI RLLKRHFTA* S SFYVLLQQCRTSAYH+RSD LISIR*QHQM HLVPHKEV*+ NYAQP NQLPP Q+K P TQ S *S Subject 1263 *VWQI*LS*EMKH*ANAQANRQWGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLVPHKEV*NRNYAQPLNQLPPCQSKSAHPQHPTQMASL*S 1610
Range 6: 1264 to 1539 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 71/92(77%) | 0/92(0%) | Minus/Plus |
Query 72 DYWLTV*VSCGGRPNLFWKGGS*FGGCA*FQLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFNNLQIGPKLS 347 DY L +*V C G +L W+GGS*F GCA*F+ QTSL*GTRC+I*CC+LIEIK SDL **ALVLHCCNKT*KE+D+HAVKCLF+NL+IGPKLS Subject 1264 DYRLAI*VGC*GCADLLWQGGS*FSGCA*FRFQTSL*GTRCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLS 1539
Grapevine rupestris stem pitting associated virus isolate SK704 B, complete genome
Sequence ID: KX274275.1 Length: 8724 Number of Matches: 6
Range 1: 7009 to 7350 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
248.0 bits(535) | 0.0 | 103/114(90%) | 0/114(0%) | Minus/Plus |
Query 5 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSTTCKLGQNCHSVDDRLGHWLGAAFPKKVKFAI 346 I GSPFEL VEGVLICFGKEAVDLA AHNS+FKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFS TC+LGQN H VDD GHWLGAAF KKVKFAI Subject 7009 ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSATCELGQNYHPVDDWRGHWLGAAFSKKVKFAI 7350
Range 2: 7008 to 7352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 100/115(87%) | 0/115(0%) | Plus/Minus |
Query 3 SMANLTFLGNAAPSQCPSLSSTE*QFWPNLQVVEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANSNGEPII 347 +MANLTFL NAAPSQCP SST * FWPN QV EKAFHCM+INFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLK ELCA AKSTAS PKQI TPST+NSNGEP+I Subject 7008 NMANLTFLENAAPSQCPRQSSTG**FWPNSQVAEKAFHCMMINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKSELCAAAKSTASLPKQISTPSTSNSNGEPVI 7352
Range 3: 7024 to 7353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
207.3 bits(446) | 0.0 | 90/110(82%) | 0/110(0%) | Plus/Minus |
Query 2 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIMRNRQINCLLSKTN*DALHS*LK 331 EYGKFDFLRKCSTKPMP PIVNGV VLAQFAGC*KGISLHD Q LSMSCCSNVEPVLII GRI *FQ*G+NIKC TS+LTRKFE+ IMR+R INCLL+K N* L+ LK Subject 7024 EYGKFDFLRKCSTKPMPTPIVNGVIVLAQFAGC*KGISLHDDQFLSMSCCSNVEPVLIIGGRIP*FQ*GNNIKCSTSHLTRKFEIRIMRSR*INCLLAKAN*HTLNIQLK 7353
Range 4: 7007 to 7354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
200.4 bits(431) | 0.0 | 93/116(80%) | 0/116(0%) | Minus/Plus |
Query 1 *LLAHRLS*LWRAS*FVLERRQLIWRLRIIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS 348 *L LS + R *F L RRQLI RLRII SNFLVR EV HLML PY*NQ IRP MISTGSTLLQQDIER+* SCSEMPFQQPANWAKT+TPLTIG+GIGLVLHFLRKSNLPYS Subject 7007 *LQVRHLSWMLRVC*FALARRQLI*RLRIILISNFLVRCEVLHLMLLPY*NQGIRPPMISTGSTLLQQDIERN*SSCSEMPFQQPANWAKTITPLTIGVGIGLVLHFLRKSNLPYS 7354
Range 5: 7007 to 7354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
197.6 bits(425) | 0.0 | 90/116(78%) | 0/116(0%) | Plus/Minus |
Query 1 *VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SWNYAQPPNQLPPFQNKLGRPPQLTQTVSQ*S 348 *+WQI*LS*+MQHQANA A RQR DSFGPI RLLKRHFTA* S SFYVLLQQCRTSAYH+RSD LISIR*QHQM HL PHKEV*+ NYAQP NQLPP Q+KL P TQ + *S Subject 7007 *IWQI*LS*KMQHQANAHANRQRGDSFGPIRRLLKRHFTA**SISFYVLLQQCRTSAYHRRSDPLISIR*QHQM*HLAPHKEV*NQNYAQPLNQLPPCQSKLAHPQHPTQMANL*S 7354
Range 6: 7008 to 7283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
163.7 bits(351) | 0.0 | 70/92(76%) | 0/92(0%) | Minus/Plus |
Query 72 DYWLTV*VSCGGRPNLFWKGGS*FGGCA*FQLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFNNLQIGPKLS 347 DY +*V C G NL W+GGS*F GCA*F QTSL*G RC+I*CC+LIEIK SDL **ALVLHCCNKT*KE+D+HAVKCLF+NL+IGPKLS Subject 7008 DYRFAI*VGC*GCANLLWQGGS*FSGCA*F*FQTSL*GARCYI*CCYLIEIKGSDLR**ALVLHCCNKT*KEIDHHAVKCLFSNLRIGPKLS 7283
Rupestris stem pitting associated virus isolate RSP47 4 replicase gene, partial cds; triple gene block protein 1, triple gene block protein 2, and triple gene block protein 3 genes, complete cds; and capsid protein gene, partial cds
Sequence ID: EF105294.1 Length: 2680 Number of Matches: 7
Range 1: 1289 to 1630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.6 bits(473) | 0.0 | 88/114(77%) | 0/114(0%) | Minus/Plus |
Query 5 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSTTCKLGQNCHSVDDRLGHWLGAAFPKKVKFAI 346 ++GSPFEL VEGVLICFGKEAVDLAVAHNS+FKLPCEVRG+TFDVVTLLKSRDPTS+DKHWFY+AATRHR KLIIMQ*NAFS TC+LG + +S++ GHW+G+A K++K AI Subject 1289 VVGSPFELEVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFDVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*NAFSATCQLG*DHNSINYWFGHWVGSALLKEIKSAI 1630
Range 2: 1294 to 1551 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 67/86(78%) | 0/86(0%) | Plus/Minus |
Query 84 PNLQVVEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANSNGEP 341 P+ QV EKAF+C+II+ CLVAA *NQCLSSEVGSLDFN VTTSNV PRTSQG+LK ELCATA+STASFPKQ+RTPST++SNG+P Subject 1294 PSWQVAEKAFYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTSNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDP 1551
Range 3: 1579 to 1632 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 9/18(50%) | 0/18(0%) | Plus/Minus |
Query 3 SMANLTFLGNAAPSQCPS 56 +MA+L L +A P+QCP+ Subject 1579 NMADLISLRSAEPTQCPN 1632
Range 4: 1332 to 1634 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 67/101(66%) | 0/101(0%) | Minus/Plus |
Query 1 FVLERRQLIWRLRIIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS 303 F LERR I +L I TS+ R V HL L Y*+ I+ IS GSTL Q IE +** CS+MPFQQPANWAKT+TPLTIGLGIGLVLHFLRKSNLPYS Subject 1332 FALERRL*I*QLHTILTSSCPARCGVQHLTL*RY*SPGIQLQKISIGSTLQPQGIEVN***CSKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYS 1634
Range 5: 1316 to 1633 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.0 bits(284) | 0.0 | 63/106(59%) | 0/106(0%) | Plus/Minus |
Query 2 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIMRNRQINCLLSKTN*DALH 319 EYG+FDFL+KC T PMPKPIVNGV VLAQ AGC*KGI LH YQ SM C NVEP+LI I Q* N+KC T +L + EV I+ N I LLSK N + L+ Subject 1316 EYGRFDFLKKCRTNPMPKPIVNGVMVLAQLAGC*KGILLHYYQFTSMPCGCNVEPMLIF*SWIPGLQ*RYNVKC*TPHLAGQLEVRIVCNC*IYSLLSKANENPLN 1633
Range 6: 1332 to 1634 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
85.4 bits(180) | 0.0 | 48/101(48%) | 0/101(0%) | Plus/Minus |
Query 1 *VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SWNYAQPPNQLPPFQNK 303 *+WQI* *E+Q+Q NAQ S P+ RLLKRHFTA LS F L Q RT+AY + D SI Q QM + P + *S N Q + PPFQ+K Subject 1332 *IWQI*FP*EVQNQPNAQTNS*WSYGLSPVGRLLKRHFTALLSVYFDALWLQRRTNAYLLKLDPWTSITLQRQMLNPAPRRAT*SQNCVQLLDLQPPFQSK 1634
Range 7: 1321 to 1551 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 37/77(48%) | 0/77(0%) | Minus/Plus |
Query 84 GRPNLFWKGGS*FGGCA*FQLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFNNLQIG 314 G +L WKGG C F LQ +L G +I* C++IE++ S+ *ALVL C +K K DN+AVKCLF+NL G Subject 1321 GGSHLLWKGGCRSSSCTQF*LQVALRGAGFNI*RCNVIEVQGSNFRR*ALVLRCSHKASK*TDNNAVKCLFSNLPTG 1551
Grapevine rupestris stem pitting associated virus isolate SK704 A, complete genome
Sequence ID: KX274274.1 Length: 8725 Number of Matches: 7
Range 1: 7009 to 7350 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
218.7 bits(471) | 0.0 | 88/114(77%) | 0/114(0%) | Minus/Plus |
Query 5 IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ*NAFSTTCKLGQNCHSVDDRLGHWLGAAFPKKVKFAI 346 +IGSPFEL VEGVLICFGKEAVDLAVAHNS+FKLPCEVRG+TF+VVTLLKSRDPTS+DKHWFY+AATRHR KLIIMQ*+AF TC+LG + +S++ LGHW+G+ +KVKFAI Subject 7009 VIGSPFELDVEGVLICFGKEAVDLAVAHNSDFKLPCEVRGSTFNVVTLLKSRDPTSEDKHWFYVAATRHRSKLIIMQ*DAFPATCQLG*DYNSINHWLGHWIGSTLLEKVKFAI 7350
Range 2: 7011 to 7271 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
153.7 bits(329) | 0.0 | 65/87(75%) | 0/87(0%) | Plus/Minus |
Query 84 PNLQVVEKAFHCMIINFFLCLVAAM*NQCLSSEVGSLDFNKVTTSNVAPRTSQGSLKLELCATAKSTASFPKQIRTPSTANSNGEPI 344 P+ QV KA +C+II+ CLVAA *NQCLSSEVGSLDFN VTT NV PRTSQG+LK ELCATA+STASFPKQ+RTPST++SNG+PI Subject 7011 PSWQVAGKASYCIIISLLRCLVAAT*NQCLSSEVGSLDFNNVTTLNVEPRTSQGNLKSELCATARSTASFPKQMRTPSTSSSNGDPI 7271
Range 3: 7299 to 7352 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 11/18(61%) | 0/18(0%) | Plus/Minus |
Query 3 SMANLTFLGNAAPSQCPS 56 +MANLTF + P QCPS Subject 7299 NMANLTFSRSVEPIQCPS 7352
Range 4: 7036 to 7353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
146.3 bits(313) | 0.0 | 65/106(61%) | 0/106(0%) | Plus/Minus |
Query 2 EYGKFDFLRKCSTKPMPKPIVNGVTVLAQFAGC*KGISLHDYQLLSMSCCSNVEPVLIIRGRIS*FQ*GDNIKCGTSYLTRKFEVGIMRNRQINCLLSKTN*DALH 319 EYGKFDFL+KC T PMPKP+VNGV VLAQ AGC KGI LH YQ SM CC NVEP+LI + Q* N+KC T +LT + EVGI+RN I LLSK N ++L+ Subject 7036 EYGKFDFLKKCRTNPMPKPMVNGVIVLAQLAGCWKGILLHYYQFASMPCCCNVEPMLIF*SWVPRLQ*RHNVKC*TPHLTGQLEVGIVRNC*IYGLLSKANENSLN 7353
Range 5: 7052 to 7354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 70/101(69%) | 0/101(0%) | Minus/Plus |
Query 1 FVLERRQLIWRLRIIPTSNFLVRYEVPHLMLSPY*NQEIRPLMISTGSTLLQQDIERS**SCSEMPFQQPANWAKTVTPLTIGLGIGLVLHFLRKSNLPYS 303 F LERR I +LR IPTS+ VR V HL L Y*+ + IS GSTL QQ IE +** CS+MPFQQPANWAKT+TPLTIGLGIGLVLHFLRKSNLPYS Subject 7052 FALERRP*I*QLRTIPTSSCPVRCGVQHLTL*RY*SLGTQLQKISIGSTLQQQGIEAN***CSKMPFQQPANWAKTITPLTIGLGIGLVLHFLRKSNLPYS 7354
Range 6: 7011 to 7280 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.5 bits(178) | 0.0 | 41/90(46%) | 0/90(0%) | Minus/Plus |
Query 75 YWLTV*VSCGGRPNLFWKGGS*FGGCA*FQLQTSL*GTRCHI*CCHLIEIKRSDL***ALVLHCCNKT*KEVDNHAVKCLFNNLQIGPKL 344 Y + +* C G +L WKGG CA F+LQ +L*G +I* C +IE+ + *ALVL C NK K+ DN+AV+CL +NL G +L Subject 7011 YRVAI*TGC*GSSHLLWKGGRRSSSCAQFRLQVAL*GAGFNI*RCDVIEV*GPNFRR*ALVLRCSNKASKQTDNNAVRCLSSNLPTGLRL 7280
Range 7: 7052 to 7354 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.6 bits(174) | 0.0 | 49/101(49%) | 0/101(0%) | Plus/Minus |
Query 1 *VWQI*LS*EMQHQANAQAYRQRSDSFGPICRLLKRHFTA*LSTSFYVLLQQCRTSAYHQRSDLLISIR*QHQMWHLVPHKEV*SWNYAQPPNQLPPFQNK 303 *+WQI*LS E+ +Q+NAQA S S P+ RLL+RH TA LS F LL Q RT+AY + SI Q M + PH+ *S N AQ + PPFQ+K Subject 7052 *IWQI*LSQEV*NQSNAQANG*WSYSLSPVGRLLERHLTALLSVCFDALLLQRRTNAYLLKLGP*TSITSQR*MLNPAPHRAT*SRNCAQLLDLRPPFQSK 7354
Nucleotide Sequence (561 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
443.2 | 2385.0 | 40% | 1.251e-122 | 92% | HE591388.1 | |
443.2 | 2408.8 | 39% | 1.251e-122 | 92% | JQ922417.1 | |
440.9 | 2324.5 | 40% | 6.125e-122 | 85% | KR528585.1 | |
439.6 | 2376.7 | 40% | 1.588e-121 | 91% | AF026278.1 | |
438.7 | 2393.2 | 40% | 2.997e-121 | 92% | KX925555.1 |
Alignments
Grapevine rupestris stem pitting associated virus complete genome, isolate PG, genomic RNA
Sequence ID: HE591388.1 Length: 8725 Number of Matches: 9
Range 1: 3034 to 3579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
443.2 bits(961) | 0.0 | 180/182(99%) | 0/182(0%) | Minus/Plus |
Query 11 VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 556 +ETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIR+HVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN Subject 3034 IETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 3579
Range 2: 3034 to 3579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
413.0 bits(895) | 0.0 | 173/182(95%) | 0/182(0%) | Plus/Minus |
Query 11 I*FKAKNSA*GPLTFPEFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIHQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 556 I*FKAKNS *GP TFPEFPTNFIFWCDHY+ YVVPNAE*C+HLILGISILFQLFRNGWG*KIWI+QALTLHKRSNTGL*GKSISAK KTNRMPKAIAITRH ESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTII FY Subject 3034 I*FKAKNST*GPFTFPEFPTNFIFWCDHYQPYVVPNAE*CNHLILGISILFQLFRNGWG*KIWIYQALTLHKRSNTGL*GKSISAK*KTNRMPKAIAITRH*ESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIISFY 3579
Range 3: 3036 to 3587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
405.7 bits(879) | 0.0 | 173/184(94%) | 0/184(0%) | Minus/Plus |
Query 3 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGESRSFSPSHF*TIGRECLCRE*DDRIILHSVPRKTHSDHTRI*S*LEIRGR*VAPMRNSLP*IKSLP 554 RN LWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQ EGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFL AW*WQLLLAFCWFF *H*WTCPKGRYSIFCGE*ALG+SRSFSPSHF*TIGRECLCRE*DD IILHS PRK SDHTRI*S*LEIRGR*+APM NSLP*IKSLP Subject 3036 RN*LWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQAEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLSAW*WQLLLAFCWFFT*H*WTCPKGRYSIFCGE*ALGKSRSFSPSHF*TIGRECLCRE*DDCIILHSAPRKADSDHTRI*S*LEIRGR*MAPMWNSLP*IKSLP 3587
Range 4: 3116 to 3589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
363.1 bits(786) | 0.0 | 148/158(94%) | 0/158(0%) | Plus/Minus |
Query 1 VGSDLI*GKEFRIGATHLPRISN*LHILV*SL*VLRGTECRIMRSSHSRHKHSLPIV*KWLGLKDLDSPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 474 VGSDLI*GKEF IGA HLPRISN*LHILV*SL LRG ECRIM+SSHSRHKHSLPIV*KWLGLKDLD PSAHSPQKIEYRPLGQVHQC* KNQQNAKSNCHHQA RKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPS CQWI*LGPCTLLQKWN Subject 3116 VGSDLI*GKEFHIGAIHLPRISN*LHILV*SLSALRGAECRIMQSSHSRHKHSLPIV*KWLGLKDLDLPSAHSPQKIEYRPLGQVHQC*VKNQQNAKSNCHHQALRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSACQWI*LGPCTLLQKWN 3589
Range 5: 3035 to 3073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
32.2 bits(64) | 0.0 | 12/13(92%) | 0/13(0%) | Plus/Minus |
Query 517 QKTPGLLDHNLFL 555 QKTPGLLDHN FL Subject 3035 QKTPGLLDHNQFL 3073
Range 6: 3290 to 3586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.5 bits(453) | 0.0 | 91/99(92%) | 0/99(0%) | Minus/Plus |
Query 4 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*DS**SHQNMKLVGNSGKVSGPYAEFFALNQIAA 300 AIAFGILLVF LALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR* HYSAFGTT* **SHQNMKLVGNSGKV+GPY EFFALNQI + Subject 3290 AIAFGILLVFYLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*LHYSAFGTT*G***SHQNMKLVGNSGKVNGPYVEFFALNQITS 3586
Range 7: 3035 to 3241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 68/69(99%) | 0/69(0%) | Minus/Plus |
Query 349 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 555 *K IMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV Subject 3035 *KLIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 3241
Range 8: 3036 to 3422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 128/129(99%) | 0/129(0%) | Plus/Minus |
Query 168 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 554 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TL+LPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS Subject 3036 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLSLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 3422
Grapevine rupestris stem pitting associated virus isolate GRSPaV GG, complete genome
Sequence ID: JQ922417.1 Length: 8758 Number of Matches: 9
Range 1: 3034 to 3579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
443.2 bits(961) | 0.0 | 180/182(99%) | 0/182(0%) | Minus/Plus |
Query 11 VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 556 +ETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIR+HVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN Subject 3034 IETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 3579
Range 2: 3036 to 3587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
416.7 bits(903) | 0.0 | 175/184(95%) | 0/184(0%) | Minus/Plus |
Query 3 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGESRSFSPSHF*TIGRECLCRE*DDRIILHSVPRKTHSDHTRI*S*LEIRGR*VAPMRNSLP*IKSLP 554 RN LWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQV+GSQFRMLIFR+QGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALG+SRSFSPSHF*TIGRECLCRE*DDRIILHS PRK +SDHTRI*S*LEIRGR*VAPM N LP*IKSLP Subject 3036 RNGLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVKGSQFRMLIFRVQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGKSRSFSPSHF*TIGRECLCRE*DDRIILHSAPRKAYSDHTRI*S*LEIRGR*VAPMWNPLP*IKSLP 3587
Range 3: 3034 to 3579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
415.3 bits(900) | 0.0 | 174/182(96%) | 0/182(0%) | Plus/Minus |
Query 11 I*FKAKNSA*GPLTFPEFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIHQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 556 I*FKAK+S *GPLTFPEFPTNFIFWCDHY+ YVVPNAE*CDHLILGISILFQLFRNGWG*KIWI+QALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLG GK*AF*TVNP PASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTII FY Subject 3034 I*FKAKDST*GPLTFPEFPTNFIFWCDHYKPYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIYQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGPGK*AF*TVNP*PASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIIRFY 3579
Range 4: 3116 to 3586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.2 bits(795) | 0.0 | 150/157(96%) | 0/157(0%) | Plus/Minus |
Query 4 GSDLI*GKEFRIGATHLPRISN*LHILV*SL*VLRGTECRIMRSSHSRHKHSLPIV*KWLGLKDLDSPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 474 GSDLI*GK F IGATHLPRISN*LHILV*SL* LRG ECRIMRSSHSRHKHSLPIV*KWLGLKDLD PSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPW RKMSILNCEP TCQWI*LGPCTLLQKWN Subject 3116 GSDLI*GKGFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KWLGLKDLDLPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWTRKMSILNCEPLTCQWI*LGPCTLLQKWN 3586
Range 5: 3035 to 3073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
31.8 bits(63) | 0.0 | 12/13(92%) | 0/13(0%) | Plus/Minus |
Query 517 QKTPGLLDHNLFL 555 QKTPGLLDHN FL Subject 3035 QKTPGLLDHNPFL 3073
Range 6: 3290 to 3586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
216.9 bits(467) | 0.0 | 93/99(94%) | 0/99(0%) | Minus/Plus |
Query 4 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*DS**SHQNMKLVGNSGKVSGPYAEFFALNQIAA 300 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT* **SHQNMKLVGNSGKVSGPY E FALNQI + Subject 3290 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*GL**SHQNMKLVGNSGKVSGPYVESFALNQITS 3586
Range 7: 3035 to 3241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.6 bits(342) | 0.0 | 67/69(97%) | 0/69(0%) | Minus/Plus |
Query 349 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 555 *K+IMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFP PRRYC*AARLRHV Subject 3035 *KRIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPGPRRYC*AARLRHV 3241
Range 8: 3036 to 3422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
268.7 bits(580) | 0.0 | 129/129(100%) | 0/129(0%) | Plus/Minus |
Query 168 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 554 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS Subject 3036 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 3422
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 9
Range 1: 3016 to 3561 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
440.9 bits(956) | 0.0 | 179/182(98%) | 0/182(0%) | Minus/Plus |
Query 11 VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 556 +ETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIR+HVRLIVITPEYEVSWKFGEGEWPLCGILCLKS+ Subject 3016 IETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSS 3561
Range 2: 3016 to 3558 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
399.7 bits(866) | 0.0 | 164/181(91%) | 0/181(0%) | Plus/Minus |
Query 14 *FKAKNSA*GPLTFPEFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIHQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 556 *FKAKNSA GP TFP+FPT+FIFWCD+Y+ ++VPN +*C+HLILGISILFQLFRNGWG*KIWI+QALTLHKRSNTGL GKSISA+ KTNRMPKAIAITRHRESVKIINIIISTCLNLA+*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY Subject 3016 *FKAKNSAQGPFTFPKFPTDFIFWCDYYQPHMVPNTK*CNHLILGISILFQLFRNGWG*KIWIYQALTLHKRSNTGLQGKSISAE*KTNRMPKAIAITRHRESVKIINIIISTCLNLAS*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 3558
Range 3: 3018 to 3569 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
396.5 bits(859) | 0.0 | 167/184(91%) | 0/184(0%) | Minus/Plus |
Query 3 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGESRSFSPSHF*TIGRECLCRE*DDRIILHSVPRKTHSDHTRI*S*LEIRGR*VAPMRNSLP*IKSLP 554 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIAR+PD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFF H*WTCP+GRYSIFCGE*ALG+SRSFSPSHF*TIGRECLCRE*DD IIL+S P + S+HTRI*S LEI GR*+AP+RNSLP*IKSLP Subject 3018 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARMPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFTQH*WTCPEGRYSIFCGE*ALGKSRSFSPSHF*TIGRECLCRE*DDCIILYSAPCEADSNHTRI*SQLEIWGR*MAPVRNSLP*IKSLP 3569
Range 4: 3098 to 3571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
347.0 bits(751) | 0.0 | 142/158(90%) | 0/158(0%) | Plus/Minus |
Query 1 VGSDLI*GKEFRIGATHLPRISN*LHILV*SL*VLRGTECRIMRSSHSRHKHSLPIV*KWLGLKDLDSPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 474 VGSDLI*GKEFR GA HLP+ISN*LHILV* L G E +IM+SSHSRHKHSLPIV*KWLGLKDLD PSAHSPQKIEYRP GQVHQC* KNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSG LAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN Subject 3098 VGSDLI*GKEFRTGAIHLPQISN*LHILV*LLSASHGAEYKIMQSSHSRHKHSLPIV*KWLGLKDLDLPSAHSPQKIEYRPSGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGILAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 3571
Range 5: 3017 to 3055 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 13/13(100%) | 0/13(0%) | Plus/Minus |
Query 517 QKTPGLLDHNLFL 555 QKTPGLLDHNLFL Subject 3017 QKTPGLLDHNLFL 3055
Range 6: 3272 to 3568 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.1 bits(413) | 0.0 | 84/99(85%) | 0/99(0%) | Minus/Plus |
Query 4 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*DS**SHQNMKLVGNSGKVSGPYAEFFALNQIAA 300 AIAFGILLVF ALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR* HY FGT * **SHQNMK VGN GKV+GP AEFFALNQ+ + Subject 3272 AIAFGILLVFYSALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*LHYFVFGTM*G***SHQNMKSVGNLGKVNGPCAEFFALNQVTS 3568
Range 7: 3017 to 3223 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 68/69(99%) | 0/69(0%) | Minus/Plus |
Query 349 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 555 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC* ARLRHV Subject 3017 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*DARLRHV 3223
Range 8: 3018 to 3404 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.4 bits(575) | 0.0 | 128/129(99%) | 0/129(0%) | Plus/Minus |
Query 168 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 554 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIW PSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS Subject 3018 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWHPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 3404
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 9
Range 1: 3034 to 3579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
439.6 bits(953) | 0.0 | 179/182(98%) | 0/182(0%) | Minus/Plus |
Query 11 VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 556 +ETDYGPKVLGSFEVFKGDF IKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIR+HVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN Subject 3034 IETDYGPKVLGSFEVFKGDFQIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 3579
Range 2: 3034 to 3579 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
411.6 bits(892) | 0.0 | 171/182(94%) | 0/182(0%) | Plus/Minus |
Query 11 I*FKAKNSA*GPLTFPEFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIHQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 556 I*FKAKNS *GPLTFPEFPTNFIFWC+HY+ YVVPNAE*CDHLILGISILFQLFRNGWG*KIWI+QALTLHKRSNT L*G+SISAK KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLV YYKNGTFLHLLN+KVPFENF+RPQDFWTIICFY Subject 3034 I*FKAKNST*GPLTFPEFPTNFIFWCNHYKPYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIYQALTLHKRSNTSL*GESISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVCYYKNGTFLHLLNLKVPFENFERPQDFWTIICFY 3579
Range 3: 3036 to 3587 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
404.7 bits(877) | 0.0 | 172/184(93%) | 0/184(0%) | Minus/Plus |
Query 3 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGESRSFSPSHF*TIGRECLCRE*DDRIILHSVPRKTHSDHTRI*S*LEIRGR*VAPMRNSLP*IKSLP 554 RNRLWSKSPGVF SFQRGLS+*EDGGRFHFCNN+QGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFF *H*WT PKG YSIFCGE*ALG+SRSFSPSHF*TIGRECLCRE*DDRIILHS PRK +SD+TRI*S*LEIRGR*VAPM NSLP*IKSLP Subject 3036 RNRLWSKSPGVFRSFQRGLSN*EDGGRFHFCNNIQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTRPKGWYSIFCGE*ALGKSRSFSPSHF*TIGRECLCRE*DDRIILHSAPRKAYSDYTRI*S*LEIRGR*VAPMWNSLP*IKSLP 3587
Range 4: 3116 to 3589 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
369.0 bits(799) | 0.0 | 150/158(95%) | 0/158(0%) | Plus/Minus |
Query 1 VGSDLI*GKEFRIGATHLPRISN*LHILV*SL*VLRGTECRIMRSSHSRHKHSLPIV*KWLGLKDLDSPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 474 VGSDLI*GKEF IGATHLPRISN*LHILV*SL* LRG ECRIMRSSHSRHKHSLPIV*KWLGLKDLD PSAHSPQKIEY+PLG+VHQC* KNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPC LLQKWN Subject 3116 VGSDLI*GKEFHIGATHLPRISN*LHILV*SL*ALRGAECRIMRSSHSRHKHSLPIV*KWLGLKDLDLPSAHSPQKIEYQPLGRVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCMLLQKWN 3589
Range 5: 3035 to 3073 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.1 bits(66) | 0.0 | 12/13(92%) | 0/13(0%) | Plus/Minus |
Query 517 QKTPGLLDHNLFL 555 +KTPGLLDHNLFL Subject 3035 RKTPGLLDHNLFL 3073
Range 6: 3290 to 3586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
205.4 bits(442) | 0.0 | 90/99(91%) | 0/99(0%) | Minus/Plus |
Query 4 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*DS**SHQNMKLVGNSGKVSGPYAEFFALNQIAA 300 AIAFGILLVF LALMD P*R VFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT* ** HQNMKLVGNSGKVSGPY EFFALNQI + Subject 3290 AIAFGILLVFYLALMDSP*RLVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*GL**LHQNMKLVGNSGKVSGPYVEFFALNQITS 3586
Range 7: 3035 to 3241 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.9 bits(336) | 0.0 | 66/69(96%) | 0/69(0%) | Minus/Plus |
Query 349 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 555 *KQIMVQKSWGL KFSKGTF LRRWRKVPFL** TRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV Subject 3035 *KQIMVQKSWGLSKFSKGTFKLRRWRKVPFL**HTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 3241
Range 8: 3036 to 3422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 128/129(99%) | 0/129(0%) | Plus/Minus |
Query 168 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 554 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFL+*KSPLKTSKDPRTFGP*SVS Subject 3036 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLI*KSPLKTSKDPRTFGP*SVS 3422
Grapevine rupestris stem pitting associated virus isolate ISA BR replicase, 24.4 kDa protein, 12.8 kDa protein, 8.4 kDa protein, and 28 kDa protein genes, complete cds
Sequence ID: KX925555.1 Length: 8659 Number of Matches: 9
Range 1: 3018 to 3563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
438.7 bits(951) | 0.0 | 178/182(98%) | 0/182(0%) | Minus/Plus |
Query 11 VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN 556 +ETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAP ISKQLEENAYAENEMIALFCIR+HVRLIVITPEYEVSWKFGE EWPLCGILCLKSN Subject 3018 IETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPTISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGESEWPLCGILCLKSN 3563
Range 2: 3018 to 3563 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
416.7 bits(903) | 0.0 | 174/182(96%) | 0/182(0%) | Plus/Minus |
Query 11 I*FKAKNSA*GPLTFPEFPTNFIFWCDHYESYVVPNAE*CDHLILGISILFQLFRNGWG*KIWIHQALTLHKRSNTGL*GKSISAKQKTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 556 I*FKAKNS *GPLTFPEFPTNFIFWC+HY+ YVV NAE*CDHLILGISILFQLFRNGWG*KIWI+QALTLHKRSNT L*GKSISAK KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY Subject 3018 I*FKAKNST*GPLTFPEFPTNFIFWCNHYKPYVVSNAE*CDHLILGISILFQLFRNGWG*KIWIYQALTLHKRSNTSL*GKSISAK*KTNRMPKAIAITRHRESVKIINIIISTCLNLAA*QYLLGSGK*AF*TVNPQPASGSNWGLVRYYKNGTFLHLLNVKVPFENFKRPQDFWTIICFY 3563
Range 3: 3020 to 3571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
411.6 bits(892) | 0.0 | 173/184(94%) | 0/184(0%) | Minus/Plus |
Query 3 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFA*H*WTCPKGRYSIFCGE*ALGESRSFSPSHF*TIGRECLCRE*DDRIILHSVPRKTHSDHTRI*S*LEIRGR*VAPMRNSLP*IKSLP 554 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFF *H*WTCPKG YSIFCGE*ALG+SRSFSP+HF*TIGRECLCRE*DDRIILHS PRK +SD+TRI*S*LEIRG+*VAPM NSLP*IKS P Subject 3020 RNRLWSKSPGVF*SFQRGLSH*EDGGRFHFCNNVQGPN*IHWQVEGSQFRMLIFRIQGGIARLPD*GMC*L*Y**F*HFLCAW*WQLLLAFCWFFT*H*WTCPKGWYSIFCGE*ALGKSRSFSPNHF*TIGRECLCRE*DDRIILHSTPRKAYSDYTRI*S*LEIRGK*VAPMWNSLP*IKSFP 3571
Range 4: 3100 to 3573 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
370.4 bits(802) | 0.0 | 150/158(95%) | 0/158(0%) | Plus/Minus |
Query 1 VGSDLI*GKEFRIGATHLPRISN*LHILV*SL*VLRGTECRIMRSSHSRHKHSLPIV*KWLGLKDLDSPSAHSPQKIEYRPLGQVHQC*AKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 474 VG+DLI*GKEF IGATH PRISN*LHILV*SL* LRG ECRIMRSSHSRHKHSLPIV*KWLGLKDLD PSAHSPQKIEY+PLGQVHQC* KNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN Subject 3100 VGNDLI*GKEFHIGATHFPRISN*LHILV*SL*ALRGVECRIMRSSHSRHKHSLPIV*KWLGLKDLDLPSAHSPQKIEYQPLGQVHQC*VKNQQNAKSNCHHQAQRKC*NHQYHNQHMPQSGSLAIPPWIRKMSILNCEPSTCQWI*LGPCTLLQKWN 3573
Range 5: 3019 to 3057 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 13/13(100%) | 0/13(0%) | Plus/Minus |
Query 517 QKTPGLLDHNLFL 555 QKTPGLLDHNLFL Subject 3019 QKTPGLLDHNLFL 3057
Range 6: 3274 to 3564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
204.5 bits(440) | 0.0 | 90/97(93%) | 0/97(0%) | Minus/Plus |
Query 10 AIAFGILLVFCLALMDLP*RPVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFGTT*DS**SHQNMKLVGNSGKVSGPYAEFFALNQI 300 AIAFGILLVF LALMDLP*R VFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAF TT* ** HQNMKLVGNSGKVSGPY EFFALNQI Subject 3274 AIAFGILLVFYLALMDLP*RLVFDLLWRVSAW*IQIFQPQPFLNNWKRMLMPRMR*SHYSAFDTT*GL**LHQNMKLVGNSGKVSGPYVEFFALNQI 3564
Range 7: 3019 to 3225 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 69/69(100%) | 0/69(0%) | Minus/Plus |
Query 349 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 555 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV Subject 3019 *KQIMVQKSWGLLKFSKGTFTLRRWRKVPFL**RTRPQLDPLAG*GFTVQNAHFPDPRRYC*AARLRHV 3225
Range 8: 3020 to 3406 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
266.8 bits(576) | 0.0 | 128/129(99%) | 0/129(0%) | Plus/Minus |
Query 168 CLEMAGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKXXXXXXXXXXXWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 554 CLEM GAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS Subject 3020 CLEMVGAERSGFTKRSLSTKDRIPAFRASPSVLSKKPTECQKQLPSPGTEKVLKSSIS*SAHASIWQPSNTSLDPENEHSEL*TLNLPVDLIGALYVITKMEPSSIFLM*KSPLKTSKDPRTFGP*SVS 3406
Nucleotide Sequence (390 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
260.9 | 1446.9 | 41% | 5.762e-68 | 90% | JX513892.1 | |
259.0 | 1434.0 | 26% | 2.052e-67 | 94% | AF026278.1 | |
259.0 | 1441.8 | 41% | 2.052e-67 | 93% | JQ922417.1 | |
258.6 | 1457.9 | 41% | 2.82e-67 | 96% | AB277785.1 | |
258.6 | 1468.8 | 41% | 2.82e-67 | 97% | KX925555.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate GRSPAV 1050 02 RNA dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block 1 (TGB1), triple gene block 2 (TGB2), triple gene block 3 (TGB3), coat protein (CP), and 14 kDa protein (14K) genes, complete cds
Sequence ID: JX513892.1 Length: 8716 Number of Matches: 8
Range 1: 7512 to 7862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
260.9 bits(563) | 0.0 | 116/117(99%) | 0/117(0%) | Minus/Minus |
Query 2 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNISFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 352 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPN SFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY Subject 7512 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 7862
Range 2: 7513 to 7866 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.9 bits(526) | 0.0 | 112/118(95%) | 0/118(0%) | Minus/Minus |
Query 3 KTFRXXXXXXXLQRF*PGFKSLI*FTGEFPNLTCHSTNLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 356 +TFRL LSSS*LQ F*PGFKSLI*FTGEFPNLTCHS NLTMIINFF+STANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGP+EATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI Subject 7513 RTFRLFLSSS*LQ*F*PGFKSLI*FTGEFPNLTCHSANLTMIINFFDSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPDEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 7866
Range 3: 7511 to 7723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 70/71(99%) | 0/71(0%) | Minus/Minus |
Query 1 HG*PLKPSNLPTSPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 213 HG*PLKPSNLPT PSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT Subject 7511 HG*PLKPSNLPTPPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 7723
Range 4: 7778 to 7864 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.5 bits(130) | 0.0 | 26/29(90%) | 0/29(0%) | Minus/Minus |
Query 268 DLPAAFEL*LTPAILAGLQKPHLIHRGVS 354 +LPA FEL*LTP ILAGLQKPHLIHRGVS Subject 7778 NLPAVFEL*LTPVILAGLQKPHLIHRGVS 7864
Range 5: 7511 to 7867 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.0 bits(489) | 0.0 | 114/119(96%) | 0/119(0%) | Plus/Plus |
Query 1 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAXXXXXXXXXXXXXEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 357 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVAS GPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVL KKLIIIVKL EWQVKLGNSPVNQMRLLKPG*N WS*LELK+SRKVL Subject 7511 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASSGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLSKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NHWS*LELKNSRKVL 7867
Range 6: 7512 to 7733 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
189.4 bits(407) | 0.0 | 71/74(96%) | 0/74(0%) | Plus/Plus |
Query 2 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGDVGRFEGFRG*PCC*R 223 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH GHWRVNFD*KLRPK*GPCIHCEG VGRFEGFRG*PCC R Subject 7512 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLHQGHWRVNFD*KLRPK*GPCIHCEGGVGRFEGFRG*PCCRR 7733
Range 7: 7779 to 7862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 26/28(93%) | 0/28(0%) | Plus/Plus |
Query 269 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 352 ETPR*IK*GF*SPAKI GVS*SSK AGR Subject 7779 ETPR*IK*GF*SPAKITGVS*SSKTAGR 7862
Range 8: 7573 to 7863 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 96/97(99%) | 0/97(0%) | Plus/Plus |
Query 63 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 353 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG Subject 7573 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 7863
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 8
Range 1: 7520 to 7870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 115/117(98%) | 0/117(0%) | Minus/Minus |
Query 2 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNISFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 352 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISST RLTPKAFKPPN SFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY Subject 7520 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTVRLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 7870
Range 2: 7521 to 7874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.4 bits(527) | 0.0 | 114/118(97%) | 0/118(0%) | Minus/Minus |
Query 3 KTFRXXXXXXXLQRF*PGFKSLI*FTGEFPNLTCHSTNLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 356 +TFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHS NLTMIINFFNSTANP*SLQTS HLLHSGCKGLTWAAVFN N*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI Subject 7521 RTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTS*HLLHSGCKGLTWAAVFN*N*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 7874
Range 3: 7519 to 7875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.5 bits(488) | 0.0 | 117/119(98%) | 0/119(0%) | Plus/Plus |
Query 1 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAXXXXXXXXXXXXXEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 357 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRC EV*RL*GLAVLLKKLIIIVKL EWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL Subject 7519 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRC*EV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 7875
Range 4: 7581 to 7871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.5 bits(477) | 0.0 | 95/97(98%) | 0/97(0%) | Plus/Plus |
Query 63 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 353 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSR VEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG Subject 7581 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRTVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 7871
Range 5: 7520 to 7741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.0 bits(393) | 0.0 | 70/74(95%) | 0/74(0%) | Plus/Plus |
Query 2 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGDVGRFEGFRG*PCC*R 223 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNF+*KLRPK*GPCIHCEG V RFEGFRG*P C*R Subject 7520 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFN*KLRPK*GPCIHCEGGVRRFEGFRG*PYC*R 7741
Range 6: 7787 to 7870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 28/28(100%) | 0/28(0%) | Plus/Plus |
Query 269 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 352 ETPR*IK*GF*SPAKIAGVS*SSKAAGR Subject 7787 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 7870
Range 7: 7519 to 7731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 67/71(94%) | 0/71(0%) | Minus/Minus |
Query 1 HG*PLKPSNLPTSPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 213 +G*PLKPSNL T PSQWMQGPHLGRSFQ KLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT Subject 7519 YG*PLKPSNLLTPPSQWMQGPHLGRSFQLKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 7731
Grapevine rupestris stem pitting associated virus isolate GRSPaV GG, complete genome
Sequence ID: JQ922417.1 Length: 8758 Number of Matches: 8
Range 1: 7520 to 7870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 115/117(98%) | 0/117(0%) | Minus/Minus |
Query 2 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNISFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 352 PSGCF*AL NSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPN SFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY Subject 7520 PSGCF*ALVNSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 7870
Range 2: 7521 to 7874 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.0 bits(524) | 0.0 | 114/118(97%) | 0/118(0%) | Minus/Minus |
Query 3 KTFRXXXXXXXLQRF*PGFKSLI*FTGEFPNLTCHSTNLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 356 +TFRLLLSSS*LQRF*PGFKSLI*FTG FPNLTCHS NLTMIINFFNSTANP*SLQTSQHLLHSG KGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI Subject 7521 RTFRLLLSSS*LQRF*PGFKSLI*FTG*FPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGRKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 7874
Range 3: 7519 to 7875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
227.0 bits(489) | 0.0 | 116/119(97%) | 0/119(0%) | Plus/Plus |
Query 1 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAXXXXXXXXXXXXXEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 357 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPL PL*RRCWEV*RL*GLAVLLKKLIIIVKL EWQVKLGN PVNQMRLLKPG*NRWS*LELKSSRKVL Subject 7519 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLRPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNYPVNQMRLLKPG*NRWS*LELKSSRKVL 7875
Range 4: 7520 to 7741 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 72/74(97%) | 0/74(0%) | Plus/Plus |
Query 2 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGDVGRFEGFRG*PCC*R 223 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPC+HCEG VGRFEGFRG*PCC*R Subject 7520 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCVHCEGGVGRFEGFRG*PCC*R 7741
Range 5: 7787 to 7870 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 26/28(93%) | 0/28(0%) | Plus/Plus |
Query 269 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 352 ET R*IK*GF*SPAKIAGV+*SSKAAGR Subject 7787 ETTR*IK*GF*SPAKIAGVN*SSKAAGR 7870
Range 6: 7519 to 7731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 69/71(97%) | 0/71(0%) | Minus/Minus |
Query 1 HG*PLKPSNLPTSPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 213 HG*PLKPSNLPT PSQW QGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT Subject 7519 HG*PLKPSNLPTPPSQWTQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 7731
Range 7: 7786 to 7872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 27/29(93%) | 0/29(0%) | Minus/Minus |
Query 268 DLPAAFEL*LTPAILAGLQKPHLIHRGVS 354 +LPAAFEL*LTPAILAGLQKPHLIHR VS Subject 7786 NLPAAFEL*LTPAILAGLQKPHLIHRVVS 7872
Range 8: 7581 to 7871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
221.5 bits(477) | 0.0 | 95/97(98%) | 0/97(0%) | Plus/Plus |
Query 63 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 353 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLEL RAQKQPEG Subject 7581 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELTRAQKQPEG 7871
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hiz3
Sequence ID: AB277785.1 Length: 2876 Number of Matches: 8
Range 1: 1776 to 2126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.6 bits(558) | 0.0 | 115/117(98%) | 0/117(0%) | Minus/Minus |
Query 2 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNISFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 352 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPP+ SFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY Subject 1776 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPSTSFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 2126
Range 2: 1777 to 2130 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.9 bits(539) | 0.0 | 115/118(97%) | 0/118(0%) | Minus/Minus |
Query 3 KTFRXXXXXXXLQRF*PGFKSLI*FTGEFPNLTCHSTNLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 356 +TFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHS NLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAV NQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI Subject 1777 RTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVLNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 2130
Range 3: 1775 to 2131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.0 bits(500) | 0.0 | 117/119(98%) | 0/119(0%) | Plus/Plus |
Query 1 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAXXXXXXXXXXXXXEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 357 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*L+TAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKL EWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL Subject 1775 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LRTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVKLAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 2131
Range 4: 1776 to 1997 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.3 bits(409) | 0.0 | 71/74(96%) | 0/74(0%) | Plus/Plus |
Query 2 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGDVGRFEGFRG*PCC*R 223 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*+LRPK*GPCIHCEG GRFEGFRG*PCC*R Subject 1776 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*ELRPK*GPCIHCEGGAGRFEGFRG*PCC*R 1997
Range 5: 2043 to 2126 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 28/28(100%) | 0/28(0%) | Plus/Plus |
Query 269 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 352 ETPR*IK*GF*SPAKIAGVS*SSKAAGR Subject 2043 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 2126
Range 6: 1775 to 1987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 68/71(96%) | 0/71(0%) | Minus/Minus |
Query 1 HG*PLKPSNLPTSPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 213 HG*PLKPSNLP PSQWMQGPHLGRS QSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT Subject 1775 HG*PLKPSNLPAPPSQWMQGPHLGRSSQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 1987
Range 7: 2042 to 2128 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 28/29(97%) | 0/29(0%) | Minus/Minus |
Query 268 DLPAAFEL*LTPAILAGLQKPHLIHRGVS 354 +LPAAFEL*LTPAILAGLQKPHLIHRGVS Subject 2042 NLPAAFEL*LTPAILAGLQKPHLIHRGVS 2128
Range 8: 1837 to 2127 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 96/97(99%) | 0/97(0%) | Plus/Plus |
Query 63 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 353 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG Subject 1837 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 2127
Grapevine rupestris stem pitting associated virus isolate ISA BR replicase, 24.4 kDa protein, 12.8 kDa protein, 8.4 kDa protein, and 28 kDa protein genes, complete cds
Sequence ID: KX925555.1 Length: 8659 Number of Matches: 8
Range 1: 7504 to 7854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.6 bits(558) | 0.0 | 115/117(98%) | 0/117(0%) | Minus/Minus |
Query 2 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI*Q**SISSTARLTPKAFKPPNISFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 352 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPI Q**SISSTARLTPKAFKPPN SFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY Subject 7504 PSGCF*ALANSSDFSRASKASFDSPGSFPI*LAIQPIQQ**SISSTARLTPKAFKPPNTSFTVDARASLGPQFSIKIDSPVALMKQPW*LPLLLST*ARIWMAITIPTKTRIPNRQY 7854
Range 2: 7505 to 7858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
249.9 bits(539) | 0.0 | 115/118(97%) | 0/118(0%) | Minus/Minus |
Query 3 KTFRXXXXXXXLQRF*PGFKSLI*FTGEFPNLTCHSTNLTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 356 +TFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHS N TMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI Subject 7505 RTFRLLLSSS*LQRF*PGFKSLI*FTGEFPNLTCHSANSTMIINFFNSTANP*SLQTSQHLLHSGCKGLTWAAVFNQN*LSSGPNEATLVIATTAVYMSKDLDGNYNSYQDQNSKQTI 7858
Range 3: 7503 to 7859 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.4 bits(503) | 0.0 | 117/119(98%) | 0/119(0%) | Plus/Plus |
Query 1 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAXXXXXXXXXXXXXEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 357 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIV+L EWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL Subject 7503 CIVCLEFWSW*EL*LPSKSLLM*TAVVAITKVASLGPLESQF*LKTAAQVRPLHPL*RRCWEV*RL*GLAVLLKKLIIIVELAEWQVKLGNSPVNQMRLLKPG*NRWS*LELKSSRKVL 7859
Range 4: 7504 to 7725 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.0 bits(417) | 0.0 | 73/74(99%) | 0/74(0%) | Plus/Plus |
Query 2 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGDVGRFEGFRG*PCC*R 223 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEG VGRFEGFRG*PCC*R Subject 7504 VLSVWNSGLGRNCNCHPNPCSCRQQ*WQSPRLLH*GHWRVNFD*KLRPK*GPCIHCEGGVGRFEGFRG*PCC*R 7725
Range 5: 7771 to 7854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 28/28(100%) | 0/28(0%) | Plus/Plus |
Query 269 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 352 ETPR*IK*GF*SPAKIAGVS*SSKAAGR Subject 7771 ETPR*IK*GF*SPAKIAGVS*SSKAAGR 7854
Range 6: 7503 to 7715 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
185.3 bits(398) | 0.0 | 70/71(99%) | 0/71(0%) | Minus/Minus |
Query 1 HG*PLKPSNLPTSPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 213 HG*PLKPSNLPT PSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT Subject 7503 HG*PLKPSNLPTPPSQWMQGPHLGRSFQSKLTLQWP**SNLGDCHYCCLHEQGFGWQLQFLPRPEFQTDNT 7715
Range 7: 7770 to 7856 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.1 bits(138) | 0.0 | 28/29(97%) | 0/29(0%) | Minus/Minus |
Query 268 DLPAAFEL*LTPAILAGLQKPHLIHRGVS 354 +LPAAFEL*LTPAILAGLQKPHLIHRGVS Subject 7770 NLPAAFEL*LTPAILAGLQKPHLIHRGVS 7856
Range 8: 7565 to 7855 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 96/97(99%) | 0/97(0%) | Plus/Plus |
Query 63 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 353 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG Subject 7565 HVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC*IG*MASQIGKLPGESNEAFEARLKSLELARAQKQPEG 7855
Nucleotide Sequence (449 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
332.8 | 1825.6 | 39% | 1.571e-89 | 92% | KR528585.1 | |
331.4 | 1811.4 | 39% | 4.075e-89 | 92% | JQ922417.1 | |
330.5 | 1826.1 | 40% | 7.691e-89 | 91% | AF057136.1 | |
330.5 | 1826.1 | 40% | 7.691e-89 | 91% | NC_001948.1 | |
330.1 | 1821.5 | 40% | 1.057e-88 | 91% | JX513892.1 |
Alignments
Grapevine rupestris stem pitting associated virus isolate Tannat Rspav1, complete genome
Sequence ID: KR528585.1 Length: 8595 Number of Matches: 7
Range 1: 1652 to 2098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.8 bits(720) | 0.0 | 141/149(95%) | 0/149(0%) | Plus/Minus |
Query 1 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRPIWEWKHPLSQNP*QKLWSS*AEPQEVLPVMLQTDKL**HHNQDQQRTMPCPSEI*GWTFA*GETIGGHKN*NNE*GLLCA*KGPPYRNFLPHA*HSRPPKT*TILTAQWLL 447 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSR IWEWKHPLSQNP*Q+LWSS*AEPQEVLPVMLQTDKL* HNQDQQRTMPC SEI*GWTFA*GETIGGHKN*+NE*GLLCA*KGPPYRNF PHA*HSRPPKT*TILTAQ LL Subject 1652 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRSIWEWKHPLSQNP*QRLWSS*AEPQEVLPVMLQTDKL*QPHNQDQQRTMPCASEI*GWTFA*GETIGGHKN*SNE*GLLCA*KGPPYRNF*PHA*HSRPPKT*TILTAQ*LL 2098
Range 2: 1651 to 2097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
328.7 bits(711) | 0.0 | 141/149(95%) | 0/149(0%) | Minus/Plus |
Query 2 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS 448 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLK RASSFADLDC+V+K YQFVTSQAILPEALLSLTKVFVRDSDSKGVSIP L+SRNE NELA PANSALEEPQSVDCNAGRVQASVSSS Subject 1651 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKHRASSFADLDCEVVKAYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLISRNEPNELAHPANSALEEPQSVDCNAGRVQASVSSS 2097
Range 3: 1651 to 2097 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.4 bits(693) | 0.0 | 139/149(93%) | 0/149(0%) | Plus/Minus |
Query 2 GT*NACLNPACIAIN*LRLLKG*ISWES*FI*LISRDQYGNGNTL*VRIPDKNFGQAKQSLRKYCL*CYKLINFDDITIKISKGRCPVLQKFEVGPLPKEKPLEATRIKTMSEGFYVLKKAHLIGTSYLTHNTVVHQKPEQF*LPSGF* 448 GT*NACLNPACIAIN*LRLLKG*ISW S*FI LISRDQ GNGNTL*VRIPDK+FGQAKQSLRKYCL*CYKLI+FD++TIKISKGRCPVLQKFEVGPLPKEKPLEATRIK MSEGFYVLKKAHLIGTS LTHNTVVHQKPEQF*LPS F* Subject 1651 GT*NACLNPACIAIN*LRLLKG*ISWVS*FIWLISRDQSGNGNTL*VRIPDKDFGQAKQSLRKYCL*CYKLISFDNLTIKISKGRCPVLQKFEVGPLPKEKPLEATRIKAMSEGFYVLKKAHLIGTSNLTHNTVVHQKPEQF*LPSSF* 2097
Range 4: 1652 to 2098 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
306.7 bits(663) | 0.0 | 137/149(92%) | 0/149(0%) | Minus/Plus |
Query 1 *KPLGSQNCSGFWWTTVLCVR*EVPIRWAFLST*KPSLIVLILVASNGFSLGKGPTSNF*RTGHRPLLILIVMSSKFISL*HHRQYFLRLCLA*PKFLSGILTQRVFPFPYWSREMS*MN*LSQLIQPLRSLNQLIAMQAGFKQAFQVP 447 *K LGSQNCSGFWWTTVLCVR EVPIRWAFLST*KPSLI LILVASNGFSLGKGPTSNF* TGHRPLLILIV SK ISL*HHRQYFLRLCLA*PK LSGILTQRVFPFP SREMS MN*L+QLIQPLRSLNQLIAMQAGFKQAFQVP Subject 1652 *KLLGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGFSLGKGPTSNF*STGHRPLLILIVRLSKLISL*HHRQYFLRLCLA*PKSLSGILTQRVFPFPD*SREMSQMN*LTQLIQPLRSLNQLIAMQAGFKQAFQVP 2098
Range 5: 1653 to 2012 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.8 bits(528) | 0.0 | 111/120(92%) | 0/120(0%) | Minus/Plus |
Query 87 RSHWAVKIVQVFGGRLCYA*GKKFL*GGPF*AHKSPHSLF*FLWPPMVSP*AKVQPQISEGQGIVLC*S*L*CHQSLSVCNITGNTS*GSA*LDQSFCQGF*LKGCFHSHIGLEK*AK*T 446 RS+WAVKIVQVFGGRLCYA*G KFL*GGPF*AHKSPHSL *FLWPPMVSP*AKVQPQISE QGIVLC*S*L* QSLSVCNITGNTS*GSA*LDQS CQGF*LKGCFHS I LEK*AK*T Subject 1653 RSYWAVKIVQVFGGRLCYA*G*KFL*GGPF*AHKSPHSLL*FLWPPMVSP*AKVQPQISEAQGIVLC*S*L*GCQSLSVCNITGNTS*GSA*LDQSLCQGF*LKGCFHSQIDLEK*AK*T 2012
Range 6: 2055 to 2096 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 14/14(100%) | 0/14(0%) | Minus/Plus |
Query 3 *LQCRQGSSKRFKF 44 *LQCRQGSSKRFKF Subject 2055 *LQCRQGSSKRFKF 2096
Range 7: 1650 to 2060 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
257.2 bits(555) | 0.0 | 130/137(95%) | 0/137(0%) | Plus/Minus |
Query 39 QSTD*GSSRAELAGRASSFSSFLETNMGMETPFESESLTKTLVKLSRASGSIACDVTN**TLMTSQSRSAKDDALSFXXXXXXXXXXXXHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 449 QSTD*GSSRAELAG ASSF SFLE N+GMETPFESESLTKTLVKLSRASGSIACDVTN** L TSQSRSAKDDAL FRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS Subject 1650 QSTD*GSSRAELAG*ASSFGSFLEINLGMETPFESESLTKTLVKLSRASGSIACDVTN**ALTTSQSRSAKDDALCFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 2060
Grapevine rupestris stem pitting associated virus isolate GRSPaV GG, complete genome
Sequence ID: JQ922417.1 Length: 8758 Number of Matches: 7
Range 1: 1670 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.4 bits(717) | 0.0 | 140/149(94%) | 0/149(0%) | Plus/Minus |
Query 1 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRPIWEWKHPLSQNP*QKLWSS*AEPQEVLPVMLQTDKL**HHNQDQQRTMPCPSEI*GWTFA*GETIGGHKN*NNE*GLLCA*KGPPYRNFLPHA*HSRPPKT*TILTAQWLL 447 GNLKRLLEPCLHCNQLIEAP GLN*LGELVHLAH SRPIWEWKHPLSQNP*Q+LWSS*AEPQEVLP MLQTDKL** HNQDQQRTMPC SEI*GWTFA*GETIGGHKN*+NE*GLLCA*KGPPYRNF PHA*HSRPPKT*TILTAQ LL Subject 1670 GNLKRLLEPCLHCNQLIEAPPGLN*LGELVHLAHLSRPIWEWKHPLSQNP*QRLWSS*AEPQEVLPAMLQTDKL**PHNQDQQRTMPCSSEI*GWTFA*GETIGGHKN*SNE*GLLCA*KGPPYRNF*PHA*HSRPPKT*TILTAQ*LL 2116
Range 2: 1669 to 2115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
326.9 bits(707) | 0.0 | 141/149(95%) | 0/149(0%) | Minus/Plus |
Query 2 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS 448 L ATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLK+RASSFADLDC+VIKVY+FVTSQAILPEALLSLTKVFVRDSDSKGVSIP LVSR+ELNELA PANS LEEPQSVDCNAGRVQASVSSS Subject 1669 LAATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKNRASSFADLDCEVIKVYRFVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRDELNELAHPANSVLEEPQSVDCNAGRVQASVSSS 2115
Range 3: 1678 to 2115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
311.3 bits(673) | 0.0 | 135/146(92%) | 0/146(0%) | Plus/Minus |
Query 2 GT*NACLNPACIAIN*LRLLKG*ISWES*FI*LISRDQYGNGNTL*VRIPDKNFGQAKQSLRKYCL*CYKLINFDDITIKISKGRCPVLQKFEVGPLPKEKPLEATRIKTMSEGFYVLKKAHLIGTSYLTHNTVVHQKPEQF*LPS 439 GT*NACLNPACIAIN*LRLL+ *ISW S*FI*LISRDQ GNGNTL*VRIPDK+FGQAKQSLRKYCL CYK INFD++TIKISKGRCPVLQKFEVGPLPKEKPLEATRIK MSEGFYVLKKAHLIGTS LTHNTVVHQKPEQF*LPS Subject 1678 GT*NACLNPACIAIN*LRLLQD*ISWVS*FI*LISRDQSGNGNTL*VRIPDKDFGQAKQSLRKYCLRCYKPINFDNLTIKISKGRCPVLQKFEVGPLPKEKPLEATRIKAMSEGFYVLKKAHLIGTSNLTHNTVVHQKPEQF*LPS 2115
Range 4: 1679 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
308.1 bits(666) | 0.0 | 135/146(92%) | 0/146(0%) | Minus/Plus |
Query 1 LGSQNCSGFWWTTVLCVR*EVPIRWAFLST*KPSLIVLILVASNGFSLGKGPTSNF*RTGHRPLLILIVMSSKFISL*HHRQYFLRLCLA*PKFLSGILTQRVFPFPYWSREMS*MN*LSQLIQPLRSLNQLIAMQAGFKQAFQVP 438 LGSQNCSGFWWTTVLCVR EVPIRWAFLST*KPSLI LILVASNGFSLGKGPTSNF*RTGHRPLLILIV SKFI L*H RQYFLRLCLA*PK LSGILTQRVFPFP WSREMS*MN*L+QLIQ RSLNQLIAMQAGFKQAFQVP Subject 1679 LGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGFSLGKGPTSNF*RTGHRPLLILIVRLSKFIGL*HRRQYFLRLCLA*PKSLSGILTQRVFPFPDWSREMS*MN*LTQLIQSWRSLNQLIAMQAGFKQAFQVP 2116
Range 5: 1674 to 2030 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.5 bits(525) | 0.0 | 109/119(92%) | 0/119(0%) | Minus/Plus |
Query 87 SHWAVKIVQVFGGRLCYA*GKKFL*GGPF*AHKSPHSLF*FLWPPMVSP*AKVQPQISEGQGIVLC*S*L*CHQSLSVCNITGNTS*GSA*LDQSFCQGF*LKGCFHSHIGLEK*AK*T 443 S+WAVKIVQVFGGRLCYA*G KFL*GGPF*AHKSPHSL *FLWPPMVSP*AKVQPQISE QGIVLC*S*L* +QSLSVCNI GNTS*GSA*LDQS CQGF*LKGCFHS IGLE+*AK*T Subject 1674 SYWAVKIVQVFGGRLCYA*G*KFL*GGPF*AHKSPHSLL*FLWPPMVSP*AKVQPQISEEQGIVLC*S*L*GYQSLSVCNIAGNTS*GSA*LDQSLCQGF*LKGCFHSQIGLER*AK*T 2030
Range 6: 2073 to 2114 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.0 bits(70) | 0.0 | 14/14(100%) | 0/14(0%) | Minus/Plus |
Query 3 *LQCRQGSSKRFKF 44 *LQCRQGSSKRFKF Subject 2073 *LQCRQGSSKRFKF 2114
Range 7: 1668 to 2078 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
255.4 bits(551) | 0.0 | 129/137(94%) | 0/137(0%) | Plus/Minus |
Query 39 QSTD*GSSRAELAGRASSFSSFLETNMGMETPFESESLTKTLVKLSRASGSIACDVTN**TLMTSQSRSAKDDALSFXXXXXXXXXXXXHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 449 QSTD*GSSR ELAG ASSFSS LETN+GMETPFESESLTKTLVKLSRASGSIACDVTN *TL+TSQSRSAKDDAL FRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVA+S Subject 1668 QSTD*GSSRTELAG*ASSFSSSLETNLGMETPFESESLTKTLVKLSRASGSIACDVTNR*TLITSQSRSAKDDALFFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVAAS 2078
Rupestris stem pitting associated virus 1, complete genome
Sequence ID: AF057136.1 Length: 8744 Number of Matches: 7
Range 1: 1670 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.5 bits(715) | 0.0 | 143/149(96%) | 0/149(0%) | Minus/Plus |
Query 2 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS 448 LEATGQSKLFRFLVDDC MREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDC+VIKVYQ VTSQAILPEALLSLTKVFVRDSDSKGVSIP LVSRNEL ELA PANSALEEPQSVDCNAGRVQASVSSS Subject 1670 LEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSS 2116
Range 2: 1671 to 2117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 140/149(94%) | 0/149(0%) | Plus/Minus |
Query 1 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRPIWEWKHPLSQNP*QKLWSS*AEPQEVLPVMLQTDKL**HHNQDQQRTMPCPSEI*GWTFA*GETIGGHKN*NNE*GLLCA*KGPPYRNFLPHA*HSRPPKT*TILTAQWLL 447 GNLKRLLEPCLH NQLIEAPQGLN*LGELV LAHFSRPIWEWKHPLSQNP*Q+LWSS*AEPQEVLPVMLQ DKL** HNQDQQRTMPCPSEI*GWTFA*G TIGGHKN*+NE*GLLCA*KGPPYRNF PHA*HSRPPKT*TILTAQ LL Subject 1671 GNLKRLLEPCLHYNQLIEAPQGLN*LGELVPLAHFSRPIWEWKHPLSQNP*QRLWSS*AEPQEVLPVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN*SNE*GLLCA*KGPPYRNF*PHA*HSRPPKT*TILTAQ*LL 2117
Range 3: 1670 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
318.1 bits(688) | 0.0 | 137/149(92%) | 0/149(0%) | Plus/Minus |
Query 2 GT*NACLNPACIAIN*LRLLKG*ISWES*FI*LISRDQYGNGNTL*VRIPDKNFGQAKQSLRKYCL*CYKLINFDDITIKISKGRCPVLQKFEVGPLPKEKPLEATRIKTMSEGFYVLKKAHLIGTSYLTHNTVVHQKPEQF*LPSGF* 448 GT*NACLNPACI IN*LRLLKG*ISW S*F+*LISRDQ GNGNTL*VRIPDK+FGQAKQSLRKYCL*CYKLINFD++TIKISKGRCPVLQKFEVGPLPKE+PLEATRIK MSEGFYVLKKAHLIGTS LTH+TVVHQKPEQF*LPS F* Subject 1670 GT*NACLNPACITIN*LRLLKG*ISWVS*FL*LISRDQSGNGNTL*VRIPDKDFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LPSSF* 2116
Range 4: 1671 to 2117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.1 bits(677) | 0.0 | 138/149(93%) | 0/149(0%) | Minus/Plus |
Query 1 *KPLGSQNCSGFWWTTVLCVR*EVPIRWAFLST*KPSLIVLILVASNGFSLGKGPTSNF*RTGHRPLLILIVMSSKFISL*HHRQYFLRLCLA*PKFLSGILTQRVFPFPYWSREMS*MN*LSQLIQPLRSLNQLIAMQAGFKQAFQVP 447 *K LGSQNCSGFWWTTVLCVR EVPIRWAFLST*KPSLI LILVASNG SLGKGPTSNF*RTGHRPLLILIV SKFISL*HHRQYFLRLCLA*PK LSGILTQRVFPFP WSREMS* N*L+QLIQPLRSLNQLI MQAGFKQAFQVP Subject 1671 *KLLGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSLSGILTQRVFPFPDWSREMS*RN*LTQLIQPLRSLNQLIVMQAGFKQAFQVP 2117
Range 5: 1669 to 2079 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 131/137(96%) | 0/137(0%) | Plus/Minus |
Query 39 QSTD*GSSRAELAGRASSFSSFLETNMGMETPFESESLTKTLVKLSRASGSIACDVTN**TLMTSQSRSAKDDALSFXXXXXXXXXXXXHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 449 QSTD*GSSRAELAG ASS SSFLETN+GMETPFESESLTKTLVKLSRASGSIACDVT+**TL+TSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRI QSSTKNLNNFDCPVASS Subject 1669 QSTD*GSSRAELAG*ASSSSSFLETNLGMETPFESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASS 2079
Range 6: 1669 to 2031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 110/121(91%) | 0/121(0%) | Minus/Plus |
Query 87 ARSHWAVKIVQVFGGRLCYA*GKKFL*GGPF*AHKSPHSLF*FLWPPMVSP*AKVQPQISEGQGIVLC*S*L*CHQSLSVCNITGNTS*GSA*LDQSFCQGF*LKGCFHSHIGLEK*AK*T 449 ARS+WAVKIVQVFGGRLCYA*G KFL*GGPF*AHKSPHSL *FLWPPMV P*AKVQPQISEGQGIVLC*S*L* +QSLS CNITGNTS*GSA*LDQS CQGF*LKGCFHS IGLEK*A+ T Subject 1669 ARSYWAVKIVQVFGGRLCYA*G*KFL*GGPF*AHKSPHSLL*FLWPPMVPP*AKVQPQISEGQGIVLC*S*L*GYQSLSACNITGNTS*GSA*LDQSLCQGF*LKGCFHSQIGLEK*ARGT 2031
Rupestris stem pitting associated virus 1, complete genome
Sequence ID: NC_001948.1 Length: 8744 Number of Matches: 7
Range 1: 1670 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.5 bits(715) | 0.0 | 143/149(96%) | 0/149(0%) | Minus/Plus |
Query 2 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS 448 LEATGQSKLFRFLVDDC MREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDC+VIKVYQ VTSQAILPEALLSLTKVFVRDSDSKGVSIP LVSRNEL ELA PANSALEEPQSVDCNAGRVQASVSSS Subject 1670 LEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSS 2116
Range 2: 1671 to 2117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 140/149(94%) | 0/149(0%) | Plus/Minus |
Query 1 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRPIWEWKHPLSQNP*QKLWSS*AEPQEVLPVMLQTDKL**HHNQDQQRTMPCPSEI*GWTFA*GETIGGHKN*NNE*GLLCA*KGPPYRNFLPHA*HSRPPKT*TILTAQWLL 447 GNLKRLLEPCLH NQLIEAPQGLN*LGELV LAHFSRPIWEWKHPLSQNP*Q+LWSS*AEPQEVLPVMLQ DKL** HNQDQQRTMPCPSEI*GWTFA*G TIGGHKN*+NE*GLLCA*KGPPYRNF PHA*HSRPPKT*TILTAQ LL Subject 1671 GNLKRLLEPCLHYNQLIEAPQGLN*LGELVPLAHFSRPIWEWKHPLSQNP*QRLWSS*AEPQEVLPVMLQADKL**PHNQDQQRTMPCPSEI*GWTFA*GGTIGGHKN*SNE*GLLCA*KGPPYRNF*PHA*HSRPPKT*TILTAQ*LL 2117
Range 3: 1670 to 2116 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
318.1 bits(688) | 0.0 | 137/149(92%) | 0/149(0%) | Plus/Minus |
Query 2 GT*NACLNPACIAIN*LRLLKG*ISWES*FI*LISRDQYGNGNTL*VRIPDKNFGQAKQSLRKYCL*CYKLINFDDITIKISKGRCPVLQKFEVGPLPKEKPLEATRIKTMSEGFYVLKKAHLIGTSYLTHNTVVHQKPEQF*LPSGF* 448 GT*NACLNPACI IN*LRLLKG*ISW S*F+*LISRDQ GNGNTL*VRIPDK+FGQAKQSLRKYCL*CYKLINFD++TIKISKGRCPVLQKFEVGPLPKE+PLEATRIK MSEGFYVLKKAHLIGTS LTH+TVVHQKPEQF*LPS F* Subject 1670 GT*NACLNPACITIN*LRLLKG*ISWVS*FL*LISRDQSGNGNTL*VRIPDKDFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEEPLEATRIKAMSEGFYVLKKAHLIGTSNLTHSTVVHQKPEQF*LPSSF* 2116
Range 4: 1671 to 2117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.1 bits(677) | 0.0 | 138/149(93%) | 0/149(0%) | Minus/Plus |
Query 1 *KPLGSQNCSGFWWTTVLCVR*EVPIRWAFLST*KPSLIVLILVASNGFSLGKGPTSNF*RTGHRPLLILIVMSSKFISL*HHRQYFLRLCLA*PKFLSGILTQRVFPFPYWSREMS*MN*LSQLIQPLRSLNQLIAMQAGFKQAFQVP 447 *K LGSQNCSGFWWTTVLCVR EVPIRWAFLST*KPSLI LILVASNG SLGKGPTSNF*RTGHRPLLILIV SKFISL*HHRQYFLRLCLA*PK LSGILTQRVFPFP WSREMS* N*L+QLIQPLRSLNQLI MQAGFKQAFQVP Subject 1671 *KLLGSQNCSGFWWTTVLCVRLEVPIRWAFLST*KPSLIALILVASNGSSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSLSGILTQRVFPFPDWSREMS*RN*LTQLIQPLRSLNQLIVMQAGFKQAFQVP 2117
Range 5: 1669 to 2079 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
259.0 bits(559) | 0.0 | 131/137(96%) | 0/137(0%) | Plus/Minus |
Query 39 QSTD*GSSRAELAGRASSFSSFLETNMGMETPFESESLTKTLVKLSRASGSIACDVTN**TLMTSQSRSAKDDALSFXXXXXXXXXXXXHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 449 QSTD*GSSRAELAG ASS SSFLETN+GMETPFESESLTKTLVKLSRASGSIACDVT+**TL+TSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRI QSSTKNLNNFDCPVASS Subject 1669 QSTD*GSSRAELAG*ASSSSSFLETNLGMETPFESESLTKTLVKLSRASGSIACDVTS**TLITSQSRSAKDDALSFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRIAQSSTKNLNNFDCPVASS 2079
Range 6: 1669 to 2031 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
247.1 bits(533) | 0.0 | 110/121(91%) | 0/121(0%) | Minus/Plus |
Query 87 ARSHWAVKIVQVFGGRLCYA*GKKFL*GGPF*AHKSPHSLF*FLWPPMVSP*AKVQPQISEGQGIVLC*S*L*CHQSLSVCNITGNTS*GSA*LDQSFCQGF*LKGCFHSHIGLEK*AK*T 449 ARS+WAVKIVQVFGGRLCYA*G KFL*GGPF*AHKSPHSL *FLWPPMV P*AKVQPQISEGQGIVLC*S*L* +QSLS CNITGNTS*GSA*LDQS CQGF*LKGCFHS IGLEK*A+ T Subject 1669 ARSYWAVKIVQVFGGRLCYA*G*KFL*GGPF*AHKSPHSLL*FLWPPMVPP*AKVQPQISEGQGIVLC*S*L*GYQSLSACNITGNTS*GSA*LDQSLCQGF*LKGCFHSQIGLEK*ARGT 2031
Grapevine rupestris stem pitting associated virus isolate GRSPAV 1050 02 RNA dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block 1 (TGB1), triple gene block 2 (TGB2), triple gene block 3 (TGB3), coat protein (CP), and 14 kDa protein (14K) genes, complete cds
Sequence ID: JX513892.1 Length: 8716 Number of Matches: 7
Range 1: 1661 to 2107 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
330.1 bits(714) | 0.0 | 143/149(96%) | 0/149(0%) | Minus/Plus |
Query 2 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS 448 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCF+SCGLQWFLLRQRSNLKFLK+RASSFADLDC+VIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIP LVSRNELNELA PANSALEEPQSVDCNA RVQASVSSS Subject 1661 LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFSSCGLQWFLLRQRSNLKFLKNRASSFADLDCEVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELNELAHPANSALEEPQSVDCNADRVQASVSSS 2107
Range 2: 1662 to 2108 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
328.2 bits(710) | 0.0 | 140/149(94%) | 0/149(0%) | Plus/Minus |
Query 1 GNLKRLLEPCLHCNQLIEAPQGLN*LGELVHLAHFSRPIWEWKHPLSQNP*QKLWSS*AEPQEVLPVMLQTDKL**HHNQDQQRTMPCPSEI*GWTFA*GETIGGHKN*NNE*GLLCA*KGPPYRNFLPHA*HSRPPKT*TILTAQWLL 447 GNLKRLLEPCLHCNQ IEAPQGLN*LGELVHLAHFSRPIWEWK PLSQNP*Q+LWSS*AEPQEVLPVMLQTDKL** HNQDQQRTMPC SEI*GWTFA*GETIGGHKN*+NE*GLLCA*KGPPYRNF PHA*HSR PKT*TILTAQ LL Subject 1662 GNLKRLLEPCLHCNQPIEAPQGLN*LGELVHLAHFSRPIWEWKRPLSQNP*QRLWSS*AEPQEVLPVMLQTDKL**PHNQDQQRTMPCSSEI*GWTFA*GETIGGHKN*SNE*GLLCA*KGPPYRNF*PHA*HSRQPKT*TILTAQ*LL 2108
Range 3: 1661 to 2107 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.1 bits(677) | 0.0 | 136/149(91%) | 0/149(0%) | Plus/Minus |
Query 2 GT*NACLNPACIAIN*LRLLKG*ISWES*FI*LISRDQYGNGNTL*VRIPDKNFGQAKQSLRKYCL*CYKLINFDDITIKISKGRCPVLQKFEVGPLPKEKPLEATRIKTMSEGFYVLKKAHLIGTSYLTHNTVVHQKPEQF*LPSGF* 448 GT*NACLNP CIAIN LRLLKG*ISW S*FI*LISRDQ GNGN L*VRIPDK+FGQAKQSLRKYCL*CYKLINFD++TIKISKGRCPVLQKFEVGPLPKEKPLEATR K MSEGFYVLKKAHLIGTS LTHNTVV+QKPEQF*LPS F* Subject 1661 GT*NACLNPVCIAINRLRLLKG*ISWVS*FI*LISRDQSGNGNAL*VRIPDKDFGQAKQSLRKYCL*CYKLINFDNLTIKISKGRCPVLQKFEVGPLPKEKPLEATRTKAMSEGFYVLKKAHLIGTSNLTHNTVVNQKPEQF*LPSSF* 2107
Range 4: 1662 to 2108 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
309.4 bits(669) | 0.0 | 136/149(91%) | 0/149(0%) | Minus/Plus |
Query 1 *KPLGSQNCSGFWWTTVLCVR*EVPIRWAFLST*KPSLIVLILVASNGFSLGKGPTSNF*RTGHRPLLILIVMSSKFISL*HHRQYFLRLCLA*PKFLSGILTQRVFPFPYWSREMS*MN*LSQLIQPLRSLNQLIAMQAGFKQAFQVP 447 *K LGSQNCSGFW TTVLCVR EVPIRWAFLST*KPSLI L+LVASNGFSLGKGPTSNF*RTGHRPLLILIV SKFISL*HHRQYFLRLCLA*PK LSGILTQR FPFP WSREMS*MN*L+QLIQPLRSLN+LIAMQ GFKQAFQVP Subject 1662 *KLLGSQNCSGFWLTTVLCVRLEVPIRWAFLST*KPSLIALVLVASNGFSLGKGPTSNF*RTGHRPLLILIVRLSKFISL*HHRQYFLRLCLA*PKSLSGILTQRAFPFPDWSREMS*MN*LTQLIQPLRSLNRLIAMQTGFKQAFQVP 2108
Range 5: 1660 to 2070 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
264.5 bits(571) | 0.0 | 133/137(97%) | 0/137(0%) | Plus/Minus |
Query 39 QSTD*GSSRAELAGRASSFSSFLETNMGMETPFESESLTKTLVKLSRASGSIACDVTN**TLMTSQSRSAKDDALSFXXXXXXXXXXXXHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 449 QSTD*GSSRAELAG ASSFSSFLETN+GMETPFESESLTKTLVKLSRASGSIACDVTN**TL+TSQSRSAKDDAL FRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS Subject 1660 QSTD*GSSRAELAG*ASSFSSFLETNLGMETPFESESLTKTLVKLSRASGSIACDVTN**TLITSQSRSAKDDALFFRNLRLDLCLRRNHWRPQELKQ*VRAFMCLKRPTL*ELLTSRITQSSTKNLNNFDCPVASS 2070
Range 6: 1660 to 2022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.2 bits(520) | 0.0 | 111/121(92%) | 0/121(0%) | Minus/Plus |
Query 87 ARSHWAVKIVQVFGGRLCYA*GKKFL*GGPF*AHKSPHSLF*FLWPPMVSP*AKVQPQISEGQGIVLC*S*L*CHQSLSVCNITGNTS*GSA*LDQSFCQGF*LKGCFHSHIGLEK*AK*T 449 ARS+WAVKIVQVFG RLCYA*G KFL*GGPF*AHKSPHSL *FLWPPMVSP*AKVQPQISE QGIVLC*S*L* +QSLSVCNITGNTS*GSA*LDQS CQGF*LKG FHS IGLEK*AK*T Subject 1660 ARSYWAVKIVQVFG*RLCYA*G*KFL*GGPF*AHKSPHSLL*FLWPPMVSP*AKVQPQISEEQGIVLC*S*L*GYQSLSVCNITGNTS*GSA*LDQSLCQGF*LKGRFHSQIGLEK*AK*T 2022
Nucleotide Sequence (230 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
171.1 | 872.0 | 26% | 1.87e-41 | 87% | AB277785.1 | |
171.1 | 898.2 | 26% | 1.87e-41 | 91% | AF057136.1 | |
171.1 | 889.0 | 26% | 1.87e-41 | 89% | AF026278.1 | |
171.1 | 898.2 | 26% | 1.87e-41 | 91% | NC_001948.1 | |
171.1 | 914.2 | 26% | 1.87e-41 | 92% | JX513892.1 |
Alignments
Rupestris stem pitting associated virus genes for RNA dependent RNA polymerase, 24.4 kDa hypothetical protein, 12.8 kDa hypothetical protein, 8.4 kDa hypothetical protein, coat protein, partial and complete cds, strain: Hiz3
Sequence ID: AB277785.1 Length: 2876 Number of Matches: 6
Range 1: 914 to 1141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(368) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 914 SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 1141
Range 2: 915 to 1142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 66/76(87%) | 0/76(0%) | Plus/Minus |
Query 1 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLQNKT**TFL*DYGCLEHLL*KL*SFHPRKLAPLLNYFYHYQAH 228 FGMGPR AHQNLKNLGRTSTHQVYSL LALHTL+NK * TFL*D GCLEHLL*KL*+ HPRK APLL+YFYHYQAH Subject 915 FGMGPRIAHQNLKNLGRTSTHQVYSLYLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKSAPLLSYFYHYQAH 1142
Range 3: 944 to 1141 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 58/66(88%) | 0/66(0%) | Plus/Minus |
Query 2 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPCRIRLNEPSCEITAVWNTCCESYEVFILGN*LPY 199 LVWVRE HIKT*KILDGQVLIKYIHF WHCTP RIRLN PSCEI AVWNTCCESYE+ ILGN LPY Subject 944 LVWVRE*HIKT*KILDGQVLIKYIHFTWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGNQLPY 1141
Range 4: 913 to 1140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 68/76(89%) | 0/76(0%) | Minus/Plus |
Query 3 *CAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*VLFCRVCSARESEYT**VLVXXXXXXX*CAVLGPIP 230 *CAW*W*K* NKGA+FRG*+ HSFHSRCSRQP*SHRKVH* LF RVCSAR SEYT**VLVRPRFFRF*CA+LGPIP Subject 913 *CAW*W*K*LNKGADFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSAR*SEYT**VLVRPRFFRF*CAILGPIP 1140
Range 5: 915 to 1142 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 69/76(91%) | 0/76(0%) | Minus/Plus |
Query 1 VCLXXXXXXX*GS*FPRMKTS*LSQQVFQTAVISQEGSLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 228 VCLVVVKV **GS*FPRM+ S*LSQQVFQTA+ISQEG+LSLILQGVQCQ K*IYLMSTCPSKIFQVLMC SRTHTK Subject 915 VCLVVVKVA**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQVK*IYLMSTCPSKIFQVLMCYSRTHTK 1142
Range 6: 970 to 1140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 52/57(91%) | 0/57(0%) | Plus/Minus |
Query 3 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPAE*DLMNLPVRLRLSGTPAVKAMKF 173 WYGSENSTSKPEKSWTDKYSSSIFT PGTAHP E* LM LPVRL LSGTPAVKAMKF Subject 970 WYGSENSTSKPEKSWTDKYSSSIFTLPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 1140
Rupestris stem pitting associated virus 1, complete genome
Sequence ID: AF057136.1 Length: 8744 Number of Matches: 6
Range 1: 6659 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(368) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6659 SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6886
Range 2: 6660 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 69/76(91%) | 0/76(0%) | Plus/Minus |
Query 1 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLQNKT**TFL*DYGCLEHLL*KL*SFHPRKLAPLLNYFYHYQAH 228 FGMGPRTAHQNLKNLGRTSTHQVY LSLALHTL+NK * TFL*D GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAH Subject 6660 FGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAH 6887
Range 3: 6689 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 60/66(91%) | 0/66(0%) | Plus/Minus |
Query 2 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPCRIRLNEPSCEITAVWNTCCESYEVFILGN*LPY 199 LVWVREQHIKT*KILDGQVLIKYI+FPWHCTP RIRLN PSCEI AVWNTCCESYE+ ILGN*LPY Subject 6689 LVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY 6886
Range 4: 6660 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Plus |
Query 1 VCLXXXXXXX*GS*FPRMKTS*LSQQVFQTAVISQEGSLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 228 VCLVVVKVV**GS*FPRM+ S*LSQQVFQTA+ISQEG+LSLILQGVQCQGK IYLMSTCPSKIFQVLMCCSRTHTK Subject 6660 VCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTK 6887
Range 5: 6658 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Plus |
Query 3 *CAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*VLFCRVCSARESEYT**VLVXXXXXXX*CAVLGPIP 230 *CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH* LF RVCSARES YT**VLVRPRFFRF*CAVLGPIP Subject 6658 *CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIP 6885
Range 6: 6715 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 52/57(91%) | 0/57(0%) | Plus/Minus |
Query 3 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPAE*DLMNLPVRLRLSGTPAVKAMKF 173 WYGSENSTSKPEKSWTDKYSSSI TFPGTAHP E* LM LPVRL LSGTPAVKAMKF Subject 6715 WYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6885
Grapevine Rupestris stem pitting associated virus, complete genome
Sequence ID: AF026278.1 Length: 8725 Number of Matches: 6
Range 1: 6658 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(368) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6658 SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6885
Range 2: 6659 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 68/76(89%) | 0/76(0%) | Plus/Minus |
Query 1 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLQNKT**TFL*DYGCLEHLL*KL*SFHPRKLAPLLNYFYHYQAH 228 FGMGPRTAHQNLKNLGRTSTHQV SLS ALHTL+NK * TFL*D GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAH Subject 6659 FGMGPRTAHQNLKNLGRTSTHQVCSLSPALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAH 6886
Range 3: 6688 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.4 bits(324) | 0.0 | 59/66(89%) | 0/66(0%) | Plus/Minus |
Query 2 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPCRIRLNEPSCEITAVWNTCCESYEVFILGN*LPY 199 LVWVREQHIKT*KILDGQVLIKY+HFP HCTP RIRLN PSCEI AVWNTCCESYE+ ILGN*LPY Subject 6688 LVWVREQHIKT*KILDGQVLIKYVHFPRHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY 6885
Range 4: 6659 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 70/76(92%) | 0/76(0%) | Minus/Plus |
Query 1 VCLXXXXXXX*GS*FPRMKTS*LSQQVFQTAVISQEGSLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 228 VCLVVVKVV**GS*FPRM+ S*LSQQVFQTA+ISQEG+LSLILQGVQC+GK* YLMSTCPSKIFQVLMCCSRTHTK Subject 6659 VCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCRGK*TYLMSTCPSKIFQVLMCCSRTHTK 6886
Range 5: 6657 to 6884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 70/76(92%) | 0/76(0%) | Minus/Plus |
Query 3 *CAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*VLFCRVCSARESEYT**VLVXXXXXXX*CAVLGPIP 230 *CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH* LF RVCSA ESE+T**VLVRPRFFRF*CAVLGPIP Subject 6657 *CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSAGESEHT**VLVRPRFFRF*CAVLGPIP 6884
Range 6: 6714 to 6884 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.5 bits(272) | 0.0 | 52/57(91%) | 0/57(0%) | Plus/Minus |
Query 3 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPAE*DLMNLPVRLRLSGTPAVKAMKF 173 WYGSENSTSKPEKSWTDKYSSS+FTFPGTAHP E* LM LPVRL LSGTPAVKAMKF Subject 6714 WYGSENSTSKPEKSWTDKYSSSMFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6884
Rupestris stem pitting associated virus 1, complete genome
Sequence ID: NC_001948.1 Length: 8744 Number of Matches: 6
Range 1: 6659 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(368) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6659 SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6886
Range 2: 6660 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 69/76(91%) | 0/76(0%) | Plus/Minus |
Query 1 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLQNKT**TFL*DYGCLEHLL*KL*SFHPRKLAPLLNYFYHYQAH 228 FGMGPRTAHQNLKNLGRTSTHQVY LSLALHTL+NK * TFL*D GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAH Subject 6660 FGMGPRTAHQNLKNLGRTSTHQVY*LSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAH 6887
Range 3: 6689 to 6886 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.0 bits(332) | 0.0 | 60/66(91%) | 0/66(0%) | Plus/Minus |
Query 2 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPCRIRLNEPSCEITAVWNTCCESYEVFILGN*LPY 199 LVWVREQHIKT*KILDGQVLIKYI+FPWHCTP RIRLN PSCEI AVWNTCCESYE+ ILGN*LPY Subject 6689 LVWVREQHIKT*KILDGQVLIKYINFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY 6886
Range 4: 6660 to 6887 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.2 bits(304) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Plus |
Query 1 VCLXXXXXXX*GS*FPRMKTS*LSQQVFQTAVISQEGSLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 228 VCLVVVKVV**GS*FPRM+ S*LSQQVFQTA+ISQEG+LSLILQGVQCQGK IYLMSTCPSKIFQVLMCCSRTHTK Subject 6660 VCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGKLIYLMSTCPSKIFQVLMCCSRTHTK 6887
Range 5: 6658 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 71/76(93%) | 0/76(0%) | Minus/Plus |
Query 3 *CAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*VLFCRVCSARESEYT**VLVXXXXXXX*CAVLGPIP 230 *CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH* LF RVCSARES YT**VLVRPRFFRF*CAVLGPIP Subject 6658 *CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARES*YT**VLVRPRFFRF*CAVLGPIP 6885
Range 6: 6715 to 6885 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
126.2 bits(269) | 0.0 | 52/57(91%) | 0/57(0%) | Plus/Minus |
Query 3 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPAE*DLMNLPVRLRLSGTPAVKAMKF 173 WYGSENSTSKPEKSWTDKYSSSI TFPGTAHP E* LM LPVRL LSGTPAVKAMKF Subject 6715 WYGSENSTSKPEKSWTDKYSSSILTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6885
Grapevine rupestris stem pitting associated virus isolate GRSPAV 1050 02 RNA dependent RNA polymerase (RdRp) gene, partial cds; and triple gene block 1 (TGB1), triple gene block 2 (TGB2), triple gene block 3 (TGB3), coat protein (CP), and 14 kDa protein (14K) genes, complete cds
Sequence ID: JX513892.1 Length: 8716 Number of Matches: 6
Range 1: 6650 to 6877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
171.1 bits(368) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 2 SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 229 SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ Subject 6650 SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ 6877
Range 2: 6651 to 6878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.0 bits(356) | 0.0 | 70/76(92%) | 0/76(0%) | Plus/Minus |
Query 1 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLQNKT**TFL*DYGCLEHLL*KL*SFHPRKLAPLLNYFYHYQAH 228 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTL+NK * TFL*D GCLEHLL*KL*+ HPRKLAPLLNYFYHYQAH Subject 6651 FGMGPRTAHQNLKNLGRTSTHQVYSLSLALHTLENKA*CTFL*D*GCLEHLL*KL*NSHPRKLAPLLNYFYHYQAH 6878
Range 3: 6680 to 6877 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 61/66(92%) | 0/66(0%) | Plus/Minus |
Query 2 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPCRIRLNEPSCEITAVWNTCCESYEVFILGN*LPY 199 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTP RIRLN PSCEI AVWNTCCESYE+ ILGN*LPY Subject 6680 LVWVREQHIKT*KILDGQVLIKYIHFPWHCTPWRIRLNVPSCEIRAVWNTCCESYEILILGN*LPY 6877
Range 4: 6649 to 6876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 3 *CAW*W*K*FNKGANFRG*KLHSFHSRCSRQP*SHRKVH*VLFCRVCSARESEYT**VLVXXXXXXX*CAVLGPIP 230 *CAW*W*K*FNKGANFRG*+ HSFHSRCSRQP*SHRKVH* LF RVCSARESEYT**VLVRPRFFRF*CAVLGPIP Subject 6649 *CAW*W*K*FNKGANFRG*EFHSFHSRCSRQP*SHRKVH*ALFSRVCSARESEYT**VLVRPRFFRF*CAVLGPIP 6876
Range 5: 6651 to 6878 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 72/76(95%) | 0/76(0%) | Minus/Plus |
Query 1 VCLXXXXXXX*GS*FPRMKTS*LSQQVFQTAVISQEGSLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 228 VCLVVVKVV**GS*FPRM+ S*LSQQVFQTA+ISQEG+LSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK Subject 6651 VCLVVVKVV**GS*FPRMRIS*LSQQVFQTALISQEGTLSLILQGVQCQGK*IYLMSTCPSKIFQVLMCCSRTHTK 6878
Range 6: 6706 to 6876 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 53/57(93%) | 0/57(0%) | Plus/Minus |
Query 3 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPAE*DLMNLPVRLRLSGTPAVKAMKF 173 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHP E* LM LPVRL LSGTPAVKAMKF Subject 6706 WYGSENSTSKPEKSWTDKYSSSIFTFPGTAHPGE*GLMYLPVRLGLSGTPAVKAMKF 6876