Nucleotide Sequence (545 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
96.4 | 244.8 | 40% | 1.375e-32 | 36% | NC_017990.1 | |
96.4 | 244.8 | 40% | 1.375e-32 | 36% | JF716350.1 | |
93.2 | 160.2 | 27% | 1.732e-31 | 37% | HE579716.1 | |
74.4 | 167.7 | 21% | 2.009e-28 | 36% | KT598241.1 | |
69.8 | 159.0 | 23% | 7.089e-26 | 40% | KP774592.1 |
Alignments
Botrytis porri RNA virus 1 RNA 1, complete genome
Sequence ID: NC_017990.1 Length: 6215 Number of Matches: 4
Range 1: 5177 to 5422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 42/82(51%) | 0/82(0%) | Plus/Plus |
Query 1 HGNVEANKPSVAAQRVTEFYSQWAMLARRGMDRQFCQRVFEQLAIFEIDKDNKVGKHTVLRFLYGTKRGTGLGLYPIAEMPD 246 HGNVE + SV QR+TE YSQ ML RRG+D Q+VFE LAI+EI +V + L++LYG+KR GLGL P+ D Subject 5177 HGNVENKQASVGQQRITEMYSQACMLVRRGLDPARWQKVFEDLAIYEIGYTTQVSRGQCLKYLYGSKRSGGLGLMPLNTATD 5422
Range 2: 5444 to 5668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 27/75(36%) | 0/75(0%) | Plus/Plus |
Query 271 EVQEVDATVSEELKVAEIIQQNKATRKFKASGDFVSWIEEKYGVTWRHLGKQQAASLFAAANLMEGGAKANVQHQ 495 E +E V +A+ + + + KFKAS D+V +E +YGV W+H GK +A + AA+NL+EG +H+ Subject 5444 EAEEAAEEVDVAQILADSLVEGRVANKFKASSDYVGTLEREYGVVWKHNGKIKATAQVAASNLVEGITNVGAEHE 5668
Range 3: 5179 to 5403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 29/75(39%) | 0/75(0%) | Minus/Minus |
Query 3 GYSPRPVPRFVPYKNLNTVCLPTLLSLSISKIASCSNTRWQNCLSIPLLANIAHCE*NSVTL*AATEGLLASTFP 227 G P+P +PY+ T + IS IA SNT S PLL +I CE SV L TE L ST P Subject 5179 GIKPKPPLLLLPYRYFRHCPRDTWVVYPISYIARSSNTFCHLAGSNPLLTSIQACEYISVILC*PTEACLFSTLP 5403
Range 4: 5467 to 5664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 26/66(39%) | 0/66(0%) | Minus/Minus |
Query 294 CCTLAFAPPSIXXXXXXXXXXXXLPRCLQVTPYFSSIHDTKSPEALNFLVALFCCIISATLSSSDT 491 C F PS +L AA A P C Q TPY S T S EALN L L +SA++ ++ T Subject 5467 CSAPTFVIPSTRLDAATCAVALIFPLCFQTTPYSLSNVPT*SLEALNLLATLPSTKLSASICATST 5664
Botrytis porri RNA virus 1 strain GarlicBc 72 segment 1, complete sequence
Sequence ID: JF716350.1 Length: 6215 Number of Matches: 4
Range 1: 5177 to 5422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 42/82(51%) | 0/82(0%) | Plus/Plus |
Query 1 HGNVEANKPSVAAQRVTEFYSQWAMLARRGMDRQFCQRVFEQLAIFEIDKDNKVGKHTVLRFLYGTKRGTGLGLYPIAEMPD 246 HGNVE + SV QR+TE YSQ ML RRG+D Q+VFE LAI+EI +V + L++LYG+KR GLGL P+ D Subject 5177 HGNVENKQASVGQQRITEMYSQACMLVRRGLDPARWQKVFEDLAIYEIGYTTQVSRGQCLKYLYGSKRSGGLGLMPLNTATD 5422
Range 2: 5444 to 5668 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 27/75(36%) | 0/75(0%) | Plus/Plus |
Query 271 EVQEVDATVSEELKVAEIIQQNKATRKFKASGDFVSWIEEKYGVTWRHLGKQQAASLFAAANLMEGGAKANVQHQ 495 E +E V +A+ + + + KFKAS D+V +E +YGV W+H GK +A + AA+NL+EG +H+ Subject 5444 EAEEAAEEVDVAQILADSLVEGRVANKFKASSDYVGTLEREYGVVWKHNGKIKATAQVAASNLVEGITNVGAEHE 5668
Range 3: 5179 to 5403 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 29/75(39%) | 0/75(0%) | Minus/Minus |
Query 3 GYSPRPVPRFVPYKNLNTVCLPTLLSLSISKIASCSNTRWQNCLSIPLLANIAHCE*NSVTL*AATEGLLASTFP 227 G P+P +PY+ T + IS IA SNT S PLL +I CE SV L TE L ST P Subject 5179 GIKPKPPLLLLPYRYFRHCPRDTWVVYPISYIARSSNTFCHLAGSNPLLTSIQACEYISVILC*PTEACLFSTLP 5403
Range 4: 5467 to 5664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 26/66(39%) | 0/66(0%) | Minus/Minus |
Query 294 CCTLAFAPPSIXXXXXXXXXXXXLPRCLQVTPYFSSIHDTKSPEALNFLVALFCCIISATLSSSDT 491 C F PS +L AA A P C Q TPY S T S EALN L L +SA++ ++ T Subject 5467 CSAPTFVIPSTRLDAATCAVALIFPLCFQTTPYSLSNVPT*SLEALNLLATLPSTKLSASICATST 5664
Uncultured totivirus genomic RNA containing putative intergenic spacer region, contig 406.2Pv1_cloning_1
Sequence ID: HE579716.1 Length: 1043 Number of Matches: 2
Range 1: 71 to 301 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 40/77(52%) | 0/77(0%) | Plus/Plus |
Query 1 HGNVEANKPSVAAQRVTEFYSQWAMLARRGMDRQFCQRVFEQLAIFEIDKDNKVGKHTVLRFLYGTKRGTGLGLYPI 231 HG VE N PS+ AQR +E YSQ ML RRG DR Q +FE L+I+EI +V + L +LYGTK LGL PI Subject 71 HGXVETNTPSMGAQRXSEMYSQSCMLVRRGXDRGMWQNIFEDLSIYEIGYSGEVSRKQCLTYLYGTKTSGALGLMPI 301
Range 2: 377 to 580 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.0 bits(140) | 0.0 | 25/68(37%) | 0/68(0%) | Plus/Plus |
Query 310 KVAEIIQQNKATRKFKASGDFVSWIEEKYGVTWRHLGKQQAASLFAAANLMEGGAKANVQHQAALVSA 513 K+A+++ K + FKAS DF +E +Y V W+H GK QA +L AA NL +G + H+ +++ Subject 377 KLAKLLVDGKIAKNFKASNDFADLLEREYDVVWKHQGKVQATALVAAQNLTDGSTDRHAAHEQLFLNS 580
Soybean leaf associated botybirnavirus 1 isolate SaBRV1 1 segment RNA2, partial sequence
Sequence ID: KT598241.1 Length: 2385 Number of Matches: 3
Range 1: 1811 to 2041 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 28/77(36%) | 0/77(0%) | Plus/Plus |
Query 301 EELKVAEIIQQNKATRKFKASGDFVSWIEEKYGVTWRHLGKQQAASLFAAANLMEGGAKANVQHQAALVSASQSIFS 531 EE VA ++ + + ++FKAS D+++ +E+KY V W+ GK++AA+ AA+N++ G A ++QH+ V+ Q+++S Subject 1811 EEDLVARVLLEGRIVKRFKASTDYITRVEDKYQVRWKKDGKREAAAAIAASNIVGGSATTSLQHEQLEVAVLQAVWS 2041
Sclerotinia sclerotiorum botybirnavirus 1 segment 1, complete sequence
Sequence ID: KP774592.1 Length: 6457 Number of Matches: 3
Range 1: 5719 to 5940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 31/74(42%) | 0/74(0%) | Plus/Plus |
Query 310 KVAEIIQQNKATRKFKASGDFVSWIEEKYGVTWRHLGKQQAASLFAAANLMEGGAKANVQHQAALVSASQSIFS 531 + AEII + K +FKAS D+V ++Y VTWRH GK +A + AA N++EG QH V+ S FS Subject 5719 RAAEIIFEQKVYGRFKASRDYVDDTTKRYNVTWRHQGKARATATIAAQNVVEGNKTTQTQHSELEVAVLLSSFS 5940