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Nucleotide Sequence (563 letters)

Query ID:ds2016-58_76
Query definition:No definition line
Query length:489
Program:TBLASTX 2.2.29+
Database:/save/stheil/db/refseq_vir/viral.genomic.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
563

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
107.4 529.8 35% 1.101e-40 33% NC_033476
107.8 436.0 38% 1.302e-46 34% NC_024704

Alignments

Botryosphaeria dothidea virus 1 strain YZN115 RNA-dependent RNA polymerase (RdRp) gene, complete cds

Sequence ID: Length: 2397 Number of Matches: 10

Range 1: 1272 to 1514 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.4 bits(228) 0.0 48/81(59%) 0/81(0%) Plus/Plus
Query      314  MSDIWKWDSFIREVLLELGIDNIEMAVNRADLDSPALAARAAMMGVSKRQLMHKLVEHPSGYLVDLYGAMPSGSYYTSLLN  556
                MSDI KWD+ + E L+    D +E AV+ + L   A A RA M+ V++RQLM KLVEHPSGYLV L G MPSGSYYTSL+N
Subject   1272  MSDIEKWDANMCEALMGYAFDLLESAVDTSQLTDHARATRALMVRVARRQLMEKLVEHPSGYLVWLSGCMPSGSYYTSLIN  1514

Range 2: 1032 to 1244 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.9 bits(168) 0.0 47/71(66%) 0/71(0%) Plus/Plus
Query       71  AKRRKDGTIEPPIPRFIFNLSPINYALAVFLHGDLSHELQEKDVTHXXXXXXXXXXXXXXLDVVENAFKGG  283
                A + + G    P+PR IFN+SPINYALAVFLHGDLS +LQE D THGPGFGPGRGR++ FLD++E A  GG
Subject   1032  AXKMRGGERVAPVPRLIFNVSPINYALAVFLHGDLSKKLQEFDPTHGPGFGPGRGRATVFLDLLERAAGGG  1244

Range 3: 1202 to 1513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.3 bits(147) 0.0 45/104(43%) 0/104(0%) Minus/Minus
Query      244  LRRDV**EPLGMAP*RSTRYPDGCSTSLCMSWRFDTPIMAALAARAGESRSALLTAISMLSIPNSSRTSRMNESHFQMSDMTIGSSGWSLNPPLNAFSTTSKNL  555
                L  +V**EPLG+ P   TR PDGCSTS  MS R  T  M A  ARA      + TA S  S     R S M  SHF MSDM    +  +  PP    S + K +
Subject   1202  LMSEV**EPLGIHPESHTR*PDGCSTSFSMSCRRATRTMRARVARA*SVSWLVSTADSRRSKA*PIRASHMLASHFSMSDMENAPALLNTPPPAALSSRSRKTV  1513

Range 4: 1095 to 1217 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.2 bits(88) 0.0 20/41(49%) 0/41(0%) Minus/Minus
Query      134  IQELR*TPTARAETRPVSHIFLLEFMGEVPMEKDGKSVVDR  256
                IQE R   T R++   VS + LL+ + EV MEK G+S+VDR
Subject   1095  IQEDRRAATPRSKAGTVSRVELLKLLAEVTMEKHGESIVDR  1217

Range 5: 965 to 1045 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 15/27(56%) 0/27(0%) Minus/Minus
Query        1  RRFAAFGSSLPNESVGC*VVSSHLGAL  81
                R   A GS LPN S G  VVS H+G L
Subject    965  RILXALGSFLPNVSTGWVVVSIHVGTL  1045

Range 6: 966 to 1067 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.1 bits(103) 0.0 19/34(56%) 0/34(0%) Plus/Plus
Query        2  RAPKWLETTQQPTLSFGKDEPKAAKRRKDGTIEP  103
                R P W+ETT QP L+FGK EPKA K R    + P
Subject    966  RVPTWIETTTQPVLTFGKKEPKAXKMRGGERVAP  1067

Range 7: 1397 to 1513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 15/39(38%) 0/39(0%) Plus/Plus
Query      439  HDGRVETPTHAQAG*TPIRVPC*PLRRHAEWLLLHIPPQ  555
                H  R     H +A *  +R+P   LR +A+ LLLH+  Q
Subject   1397  HGARRTPAAHGEAR*ASVRLPSVALRVYAQRLLLHLTHQ  1513

Range 8: 1096 to 1218 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
28.1 bits(55) 0.0 16/41(39%) 0/41(0%) Plus/Plus
Query      135  RSTTLLPSFSMGTSPMNSKRKM*LTGRVSALAVGVHLSSWM  257
                RST L P FSM TS  + +    LT       V    SSW+
Subject   1096  RSTMLSPCFSMVTSARSFRSSTRLTVPALDRGVAARRSSWI  1218

Range 9: 1272 to 1514 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 27/81(33%) 0/81(0%) Minus/Minus
Query      314  VEEGCVIGATRHGAVEVNKVP*WVFNQLVHELAFRHAHHGSSGCEGGGIKISSINSHLNVVNTQFQQNLTNERVPFPDV*H  556
                V+E  V+GA  H   E + V * + N+L+HEL    AHH S+G  G   +++ ++  L  V     + L +  +P  DV H
Subject   1272  VDE*GVVGAAGHTPGEPH*VA*RMLNELLHELPACDAHHESTGGAGVIGELAGVDGGLEEVEGVAHKGLAHVGIPLLDVGH  1514

Range 10: 1049 to 1135 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
41.8 bits(85) 0.0 17/29(59%) 0/29(0%) Minus/Minus
Query       88  RSPWRKTARA*LIGDRLKINLGIGGSMVP  174
                RSPWR TARA*LIG+ L +  G G +  P
Subject   1049  RSPWRNTARA*LIGETLNMRRGTGATRSP  1135

Cladosporium cladosporioides virus 1 putative RNA-dependent RNA polymerase gene, complete cds

Sequence ID: Length: 2434 Number of Matches: 8

Range 1: 1268 to 1513 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
107.8 bits(229) 0.0 44/82(54%) 0/82(0%) Plus/Plus
Query      311  VMSDIWKWDSFIREVLLELGIDNIEMAVNRADLDSPALAARAAMMGVSKRQLMHKLVEHPSGYLVDLYGAMPSGSYYTSLLN  556
                +MSDI KWD+ + E LL    D +E  V+++ LD+   A R  M  V+KRQLM KL+EHPSGYL++L+G MPSGS+YTS +N
Subject   1268  IMSDIAKWDANMSEALLSATFDLMESVVDKSSLDATGRATRRIMADVAKRQLMVKLIEHPSGYLLELFGCMPSGSFYTSCVN  1513

Range 2: 1031 to 1168 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
79.0 bits(166) 0.0 30/46(65%) 0/46(0%) Plus/Plus
Query       71  AKRRKDGTIEPPIPRFIFNLSPINYALAVFLHGDLSHELQEKDVTH  208
                A +  +G   PP+PRFIFN SP+NYALA FLHGDLSH+LQ +D TH
Subject   1031  AAKLVNGVRTPPVPRFIFNPSPVNYALAAFLHGDLSHQLQTRDPTH  1168

Range 3: 965 to 1039 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 15/25(60%) 0/25(0%) Plus/Plus
Query        2  RAPKWLETTQQPTLSFGKDEPKAAK  76
                R   W + TQQP +SFGK E KAAK
Subject    965  RRAPWADFTQQPVMSFGKKEAKAAK  1039

Range 4: 1270 to 1503 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 33/78(42%) 0/78(0%) Minus/Minus
Query      313  DV**EPLGMAP*RSTRYPDGCSTSLCMSWRFDTPIMAALAARAGESRSALLTAISMLSIPNSSRTSRMNESHFQMSDM  546
                +V* EPLGM P  S++ P+GCS S  MS  F T  +  L A    SR  L T +S+ S    ++ S M  SH  MS M
Subject   1270  EV*KEPLGMQPKSSSK*PEGCSISFTMSCLFATSAIILLVALPVASRDDLSTTLSIRSKVADNKASDMLASHLAMSLM  1503

Range 5: 1048 to 1137 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
40.5 bits(82) 0.0 16/30(53%) 0/30(0%) Minus/Minus
Query       88  ERSPWRKTARA*LIGDRLKINLGIGGSMVP  177
                +RSPWR  A A*  G+ LKI  G GG + P
Subject   1048  DRSPWRNAASA*FTGEGLKIKRGTGGVLTP  1137

Range 6: 976 to 1065 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.8 bits(63) 0.0 13/30(43%) 0/30(0%) Minus/Minus
Query       13  GSMVPSLRRFAAFGSSLPNESVGC*VVSSH  102
                G ++  L  FAA  S  PN+  GC V S+H
Subject    976  GGVLTPLTSFAALASFFPNDITGCWVKSAH  1065

Range 7: 1268 to 1498 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
46.4 bits(95) 0.0 26/77(34%) 0/77(0%) Minus/Minus
Query      311  VIGATRHGAVEVNKVP*WVFNQLVHELAFRHAHHGSSGCEGGGIKISSINSHLNVVNTQFQQNLTNERVPFPDV*HD  541
                V GAT H A E+ +V   + NQL HEL+     H S       ++   +N+ L+ + +  QQ L +  VP  +V HD
Subject   1268  VEGATGHAAKELEQVARRMLNQLHHELSLCDVGHNSPRGSPSSVQR*LVNNALH*IESSGQQGLRHVGVPLGNVAHD  1498

Range 8: 1076 to 1189 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
34.5 bits(69) 0.0 15/38(39%) 0/38(0%) Minus/Minus
Query      116  ARAETRPVSHIFLLEFMGEVPMEKDGKSVVDR*QIKDK  229
                +R +TRP+  I  L+ + +V MEK G+ +V R +I++K
Subject   1076  SRPKTRPMCRIPRLQLVRQVTMEKRGERIVHRRRIENK  1189