Nucleotide Sequence (511 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
407.0 | 2288.3 | 33% | 8.679e-112 | 97% | JX658570.1 | |
332.4 | 875.6 | 55% | 2.641e-89 | 34% | KJ786413.1 | |
331.0 | 871.8 | 55% | 6.849e-89 | 36% | AY089993.1 | |
331.0 | 871.8 | 55% | 6.849e-89 | 36% | NC_004018.1 | |
327.3 | 812.1 | 54% | 8.616e-88 | 35% | AY615211.1 |
Alignments
Grapevine partitivirus isolate 3138 03 561 RNA dependent RNA polymerase (RdRp) gene, complete cds
Sequence ID: JX658570.1 Length: 1775 Number of Matches: 6
Range 1: 892 to 1395 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
407.0 bits(882) | 0.0 | 165/168(98%) | 0/168(0%) | Minus/Plus |
Query 1 QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG 504 +GETLYGLDFSSFDTK PAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTT RG Subject 892 EGETLYGLDFSSFDTKVPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTYRG 1395
Range 2: 892 to 1386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
397.0 bits(860) | 0.0 | 160/165(97%) | 0/165(0%) | Plus/Minus |
Query 10 GCPKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIKCFSL 504 GCPKQFEFDWVCRLFTFLGL HHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDG+NHLRKPGA*WHTSIFAEHPPIWH*YRSVY+IPHHGVPYVAPL SVTL*DLLSIPVLEVYVLSEYIKRHTDHPSW FRVKRREVQTIKCFSL Subject 892 GCPKQFEFDWVCRLFTFLGL*HHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGINHLRKPGA*WHTSIFAEHPPIWH*YRSVYKIPHHGVPYVAPLGSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWHFRVKRREVQTIKCFSL 1386
Range 3: 887 to 1390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
388.3 bits(841) | 0.0 | 163/168(97%) | 0/168(0%) | Plus/Minus |
Query 6 GRLSQAV*IRLGLSSFHISRASTPFR*RRRLPGHGRDQTHSRSGKHCHPLTP*DS*FQRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHKVFLPVT 509 GRLSQAV*IRLGLSSFHISRA TPFR*RRRLPGHGRDQTHSRSGKHCHPLTP*DS*FQRPDTWLGRTLIYNSRR+QPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHKVFLP++ Subject 887 GRLSQAV*IRLGLSSFHISRALTPFR*RRRLPGHGRDQTHSRSGKHCHPLTP*DS*FQRPDTWLGRTLIYNSRRNQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCATWQRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHKVFLPLS 1390
Range 4: 893 to 1387 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
383.2 bits(830) | 0.0 | 161/165(98%) | 0/165(0%) | Minus/Plus |
Query 9 REKHFMVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLSGPGVSLISPVPRKTPTLPEWC*SPRNVKRRQTQSNSNCLGQP 503 REKHFMVWTSLLLTRK QLG*SVWRLIYSDRT*TSSTGMERRSQSVTL SGATYGTPWCGI *TLRY*CQMGGCSANIEVCHQAPGLRRWL PS*IIY*CPT*PRVRTLKSGISRC*GMTVLSGPGVSLISPVPRKTPTLPEWC*SPRNVKRRQTQSNSNCLGQP Subject 893 REKHFMVWTSLLLTRKCQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLPSGATYGTPWCGIL*TLRY*CQMGGCSANIEVCHQAPGLRRWLIPS*IIY*CPT*PRVRTLKSGISRC*GMTVLSGPGVSLISPVPRKTPTLPEWC*SPRNVKRRQTQSNSNCLGQP 1387
Range 5: 894 to 1391 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
367.2 bits(795) | 0.0 | 161/166(97%) | 0/166(0%) | Minus/Plus |
Query 5 GRNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSGR*NQESQGVRG*QCFPDRE*V*SRPCPGXXXXXRNGVEAREM*KDDRPSRIQTAWDNLP 502 GRNTLWSGLLFF*HE ASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC VAQRMGLHGVVF+KHSDINARWADVPQISRCAIRLLVYADG* RRELYISVLPNHVSGR*NQESQGVRG*QCFPDRE*V*SRPCPGRRRRYRNGV+AREM*KDDRPSRIQTAWDNLP Subject 894 GRNTLWSGLLFF*HESASLDDPCGV*YTQTEHRLRVLEWREGLKA*RCQVAQRMGLHGVVFYKHSDINARWADVPQISRCAIRLLVYADG*FRRELYISVLPNHVSGR*NQESQGVRG*QCFPDRE*V*SRPCPGRRRRYRNGVKAREM*KDDRPSRIQTAWDNLP 1391
Range 6: 894 to 1394 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
345.6 bits(748) | 0.0 | 164/167(98%) | 0/167(0%) | Plus/Minus |
Query 2 PREVVPSSLNSTGSVVFSHFSGFNTIPVTXXXXXXXXXXXXLPVRKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP 502 PR VVPSSLNSTGSVVFSHFSGFNTIPVTSASSWARARSNSLPVRKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVF+KYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAG+FVSKEEKSRP*SVSP Subject 894 PR*VVPSSLNSTGSVVFSHFSGFNTIPVTSASSWARARSNSLPVRKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFIKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGTFVSKEEKSRP*SVSP 1394
Gremmeniella abietina RNA virus MS1 RNA dependent RNA polymerase gene, complete cds
Sequence ID: KJ786413.1 Length: 1781 Number of Matches: 9
Range 1: 879 to 1382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
332.4 bits(719) | 0.0 | 132/168(79%) | 0/168(0%) | Minus/Plus |
Query 1 QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG 504 +GETL+GLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD KWRNVWD MVWYFINTPILMPDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ E R L+VLGDDSAFR+ EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT RG Subject 879 EGETLHGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILMPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSAVEFSLEKAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYRG 1382
Range 2: 881 to 1249 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.7 bits(340) | 0.0 | 76/123(62%) | 0/123(0%) | Plus/Minus |
Query 134 RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP 502 RKALSSP T S *H VR T +*FTTESTI V+ +P+GTPR LRN+RPSGI IGV +KY T+ S TLRH SR +TFSP S S+F ISNATRI Q G+ VSK EKSRP VSP Subject 881 RKALSSPRTRNPRASTP*HSVRYSTKM*FTTESTI*VHHDPEGTPRLLRNMRPSGIKIGVLIKYQTIPSQTLRHFWRSRLDTFSPCHVSHSIFWRRISNATRINQEGTLVSKLEKSRPWRVSP 1249
Range 3: 1298 to 1381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 21/28(75%) | 0/28(0%) | Plus/Minus |
Query 2 PREVVPSSLNSTGSVVFSHFSGFNTIPV 85 PR VVPSSL S GS VFSHFSG + IPV Subject 1298 PRYVVPSSLKSEGSSVFSHFSGLSIIPV 1381
Range 4: 891 to 1370 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 55/160(34%) | 0/160(0%) | Plus/Minus |
Query 13 CPKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK 492 CPKQFE + L L++H+ + V L E +L ESTV+ + LT *V * +IH+ V+HL P H + A+H + H* V ++P+H +P V PL ++T LLS+P + +L++ I+ H D P F V+ R+V+T++ Subject 891 CPKQFEVRGILCFLALLRLEYHTSWLTVRLCFFEAELDR*TESTVVTKNT*STRLDTLTLC*VFD*DVIHN*VDHLSPPRPRRHATSLAKHAAVRH*DWRVDKVPNHTIPNVTPLLAITFRHLLSLPRFPLNILAKNIECHAD*PRRYFGVEARKVKTME 1370
Range 5: 896 to 1201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 37/102(36%) | 0/102(0%) | Minus/Plus |
Query 182 WSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG 487 WS L H+ L +P G+ Y+ E+ + + REG+ * VA R+G +G+V ++H+++NA V Q + A ++V +DG L EL++S +PN VSG Subject 896 WS*LFELRHQSTFLVNPRGIRYSSPEY*VGNVARREGV*T*SPKVA*RLGWYGLVLYQHANLNA*RPHVSQETWRAFWVVVDSDGRLSCELHLSRIPNRVSG 1201
Range 6: 1315 to 1371 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 8/19(42%) | 0/19(0%) | Minus/Plus |
Query 12 SPRNVKRRQTQSNSNCLGQ 68 S R+ ++++ SNCLGQ Subject 1315 SLRSARKQRIPLTSNCLGQ 1371
Range 7: 895 to 1200 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 40/102(39%) | 0/102(0%) | Minus/Plus |
Query 183 MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVR 488 MV T T K LG*S W I+ R + G ERR +V SG T+G W G T + *C C A C G RW T *I * T* VR Subject 895 MVLTFRASTPKYLLG*SAWHSIFFARILSGKRGKERRCLNVIAKSGVTFGMVWFGTLSTRQS*CLTAACFARDVACLLGRGGLRWSTQL*ITS*SNT*QSVR 1200
Range 8: 1352 to 1378 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 7/9(78%) | 0/9(0%) | Minus/Plus |
Query 5 IQTAWDNLP 31 +QTAWDN+P Subject 1352 LQTAWDNIP 1378
Range 9: 895 to 1206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 39/104(38%) | 0/104(0%) | Plus/Minus |
Query 177 QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDH 488 + PDT LG L NS+ S+PS T + A C T AL C *+T P+ P R AT H PSL ++ + S Y+ P G +K L C+ +S DH Subject 895 RHPDTLLGIRLRCNSQLSRPSESTTTQKARHVSCETCGRQALRLAC**STKPYHPKRYATFGDHV*TPSLLATFPTQYSGEEYRMPRGLTKKVLWCRSSKSQDH 1206
Gremmeniella abietina RNA virus MS1 putative replicase gene, complete cds
Sequence ID: AY089993.1 Length: 1782 Number of Matches: 8
Range 1: 879 to 1382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.0 bits(716) | 0.0 | 132/168(79%) | 0/168(0%) | Minus/Plus |
Query 1 QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG 504 +GETL+GLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD KWRNVWD MVWYFINTPILMPDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ E R L+VLGDDSAFR+ EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT RG Subject 879 EGETLHGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILMPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSPVEFSLEQAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYRG 1382
Range 2: 881 to 1249 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 78/123(63%) | 0/123(0%) | Plus/Minus |
Query 134 RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP 502 RKALSSP+T S *H VR T +*FTTESTI V+ +P+GTPR LRN+RPSGI IGV MKY T+ S TLRH SRF+TFSP S S+F ISNATRI Q G+ VSK EKSRP VSP Subject 881 RKALSSPSTRNPRASTP*HSVRYSTKM*FTTESTIWVHHDPEGTPRLLRNMRPSGIKIGVLMKYQTIPSQTLRHFWRSRFDTFSPCHVSHSIFWRRISNATRINQEGTLVSKLEKSRPWRVSP 1249
Range 3: 1298 to 1381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 21/28(75%) | 0/28(0%) | Plus/Minus |
Query 2 PREVVPSSLNSTGSVVFSHFSGFNTIPV 85 PR VVPSSL S GS VFSHFSG + IPV Subject 1298 PRYVVPSSLKSEGSSVFSHFSGLSIIPV 1381
Range 4: 891 to 1367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 58/159(36%) | 0/159(0%) | Plus/Minus |
Query 16 PKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK 492 PKQFE + L L++H+ + V L E +L ESTV+ H F LT V * +IH+ V+HL P H + A+H + H* R V E+P+H +P V PL ++T * LLS+P + +L++ I+ H D P F V+ R+V+T++ Subject 891 PKQFEVRGILCFLALLRLEYHTRWLTVRLRLFEAELDR*TESTVVAKHA*PTCFDTLTLCKVFD*DVIHN*VDHLGPPRPRRHATSLAKHAAVRH*DRRVDEVPNHTIPNVTPLLAITF*HLLSLPRFPLNILAKNIECHAD*PRRYFGVEARKVETME 1367
Range 5: 895 to 1248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 47/118(40%) | 0/118(0%) | Minus/Plus |
Query 135 MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLS 488 MV T T K LG*S W I+ R + G ERR Q+V SG T+G W G S T *C C A C G RW T *I * T VR K C TVLS Subject 895 MVSTFRASTPKYLLG*SAWHSIFFARILSGKRGKERRCQNVIAKSGVTFGMVWFGTSSTRLS*CLTAACFARDVACLLGRGGPRWSTQL*ITS*SNTLQSVRVSKHVGYACLATTVLS 1248
Range 6: 1352 to 1378 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 6/9(67%) | 0/9(0%) | Minus/Plus |
Query 5 IQTAWDNLP 31 +QTAWD++P Subject 1352 LQTAWDDIP 1378
Range 7: 884 to 1201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 39/106(37%) | 0/106(0%) | Minus/Plus |
Query 182 RNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG 499 R++ WS L H+ L +P G+ Y+ E+ + + REG+K * VA R+G +G+V H+H+ +NA V Q + A ++V DG L EL++S +P VSG Subject 884 RDSPWSRLFELRHQSTFLVNPRGIRYSSPEY*VGNVARREGVKT*SPKVA*RLGWYGLVLHQHAYLNA*RPHVSQETWRAFWVVVDPDGRLSCELHLSRIPYRVSG 1201
Range 8: 895 to 1206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 39/104(38%) | 0/104(0%) | Plus/Minus |
Query 177 QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDH 488 + PDT G L NS+ S+PS T + A C T AL C *+T P+ P R AT H L PSL ++ + S Y+ P G +K L C+ +S DH Subject 895 RHPDTL*GIRLRCNSQLSRPSGSTTTQKARHVSCETCGRQALR*AC**STKPYHPKRYATFGDHVLTPSLLATFPTQYSGEEYRMPRGLTKKVLWCRSSKSRDH 1206
Gremmeniella abietina RNA virus MS1 RNA 1, complete genome
Sequence ID: NC_004018.1 Length: 1782 Number of Matches: 8
Range 1: 879 to 1382 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
331.0 bits(716) | 0.0 | 132/168(79%) | 0/168(0%) | Minus/Plus |
Query 1 QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSRG 504 +GETL+GLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD KWRNVWD MVWYFINTPILMPDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ E R L+VLGDDSAFR+ EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT RG Subject 879 EGETLHGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILMPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSPVEFSLEQAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYRG 1382
Range 2: 881 to 1249 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
164.6 bits(353) | 0.0 | 78/123(63%) | 0/123(0%) | Plus/Minus |
Query 134 RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP 502 RKALSSP+T S *H VR T +*FTTESTI V+ +P+GTPR LRN+RPSGI IGV MKY T+ S TLRH SRF+TFSP S S+F ISNATRI Q G+ VSK EKSRP VSP Subject 881 RKALSSPSTRNPRASTP*HSVRYSTKM*FTTESTIWVHHDPEGTPRLLRNMRPSGIKIGVLMKYQTIPSQTLRHFWRSRFDTFSPCHVSHSIFWRRISNATRINQEGTLVSKLEKSRPWRVSP 1249
Range 3: 1298 to 1381 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.2 bits(101) | 0.0 | 21/28(75%) | 0/28(0%) | Plus/Minus |
Query 2 PREVVPSSLNSTGSVVFSHFSGFNTIPV 85 PR VVPSSL S GS VFSHFSG + IPV Subject 1298 PRYVVPSSLKSEGSSVFSHFSGLSIIPV 1381
Range 4: 891 to 1367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.8 bits(218) | 0.0 | 58/159(36%) | 0/159(0%) | Plus/Minus |
Query 16 PKQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK 492 PKQFE + L L++H+ + V L E +L ESTV+ H F LT V * +IH+ V+HL P H + A+H + H* R V E+P+H +P V PL ++T * LLS+P + +L++ I+ H D P F V+ R+V+T++ Subject 891 PKQFEVRGILCFLALLRLEYHTRWLTVRLRLFEAELDR*TESTVVAKHA*PTCFDTLTLCKVFD*DVIHN*VDHLGPPRPRRHATSLAKHAAVRH*DRRVDEVPNHTIPNVTPLLAITF*HLLSLPRFPLNILAKNIECHAD*PRRYFGVEARKVETME 1367
Range 5: 895 to 1248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 47/118(40%) | 0/118(0%) | Minus/Plus |
Query 135 MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLS 488 MV T T K LG*S W I+ R + G ERR Q+V SG T+G W G S T *C C A C G RW T *I * T VR K C TVLS Subject 895 MVSTFRASTPKYLLG*SAWHSIFFARILSGKRGKERRCQNVIAKSGVTFGMVWFGTSSTRLS*CLTAACFARDVACLLGRGGPRWSTQL*ITS*SNTLQSVRVSKHVGYACLATTVLS 1248
Range 6: 1352 to 1378 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 6/9(67%) | 0/9(0%) | Minus/Plus |
Query 5 IQTAWDNLP 31 +QTAWD++P Subject 1352 LQTAWDDIP 1378
Range 7: 884 to 1201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 39/106(37%) | 0/106(0%) | Minus/Plus |
Query 182 RNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG 499 R++ WS L H+ L +P G+ Y+ E+ + + REG+K * VA R+G +G+V H+H+ +NA V Q + A ++V DG L EL++S +P VSG Subject 884 RDSPWSRLFELRHQSTFLVNPRGIRYSSPEY*VGNVARREGVKT*SPKVA*RLGWYGLVLHQHAYLNA*RPHVSQETWRAFWVVVDPDGRLSCELHLSRIPYRVSG 1201
Range 8: 895 to 1206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 39/104(38%) | 0/104(0%) | Plus/Minus |
Query 177 QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDH 488 + PDT G L NS+ S+PS T + A C T AL C *+T P+ P R AT H L PSL ++ + S Y+ P G +K L C+ +S DH Subject 895 RHPDTL*GIRLRCNSQLSRPSGSTTTQKARHVSCETCGRQALR*AC**STKPYHPKRYATFGDHVLTPSLLATFPTQYSGEEYRMPRGLTKKVLWCRSSKSRDH 1206
Gremmeniella abietina RNA virus MS2 unnamed segment, complete sequence
Sequence ID: AY615211.1 Length: 1781 Number of Matches: 7
Range 1: 879 to 1379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
327.3 bits(708) | 0.0 | 131/167(78%) | 0/167(0%) | Minus/Plus |
Query 4 QGETLYGLDFSSFDTKEPAWMIRVAFDILRQNIDFEYWNGEKVSKRDAAKWRNVWDSMVWYFINTPILMPDGRMFRKYRGVPSGSWFTQMVDSVVNYILVSYLTTCQDAEIRNLKVLGDDSAFRTGSEFDLARAQEDADVTGMVLKPEKCEKTTDPVEFKLLGTTSR 504 +GETLYGLDFSSFDTK P+W+IRVAFDILRQNI++E W GEKVSKRD KWRNVWD MVWYFINTPIL PDGRMFRK RGVPSGSW+TQMVDSVVNYILV YLT CQ E R L+VLGDDSAFR+ EF L +AQ D + TGM+LKPEKCEKT DP +FKLLGTT R Subject 879 EGETLYGLDFSSFDTKVPSWLIRVAFDILRQNIEWETWQGEKVSKRDRQKWRNVWDGMVWYFINTPILNPDGRMFRKRRGVPSGSWWTQMVDSVVNYILVEYLTECQGVEARGLRVLGDDSAFRSPVEFSLEQAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYR 1379
Range 2: 881 to 1249 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 77/123(63%) | 0/123(0%) | Plus/Minus |
Query 134 RKALSSPNTLRFLISAS*HVVR*DTNI*FTTESTICVNQEPDGTPRYLRNIRPSGINIGVFMKYHTMESHTLRHLAASRFETFSPFQYSKSMFCLSISNATRIIQAGSFVSKEEKSRP*SVSP 502 RKALSSP+T S *H VR T +*FTTESTI V+ +P+GTPR LRN+RPSG IGV MKY T+ S TLRH SR +TFSP S S+F ISNATRI Q G+ VSK EKSRP* VSP Subject 881 RKALSSPSTRNPRASTP*HSVRYSTKM*FTTESTIWVHHDPEGTPRLLRNMRPSGFKIGVLMKYQTIPSQTLRHFWRSRLDTFSPCHVSHSIF*RRISNATRINQEGTLVSKLEKSRP*RVSP 1249
Range 3: 1298 to 1378 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.6 bits(91) | 0.0 | 19/27(70%) | 0/27(0%) | Plus/Minus |
Query 5 REVVPSSLNSTGSVVFSHFSGFNTIPV 85 R VVPS+L S GS VFSHFSG + IPV Subject 1298 RYVVPSNLKSEGSSVFSHFSGLSIIPV 1378
Range 4: 891 to 1364 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 56/158(35%) | 0/158(0%) | Plus/Minus |
Query 19 KQFEFDWVCRLFTFLGLQHHSGNVGVFLGTGEIKLTPGPESTVIP*HLEIPDFSVLTRG*VGH*YIIHDGVNHLRKPGA*WHTSIFAEHPPIWH*YRSVYEIPHHGVPYVAPLSSVTL*DLLSIPVLEVYVLSEYIKRHTDHPSWLFRVKRREVQTIK 492 KQFE + L L++H+ + V L E +L ESTV+ H F LT V * +IH+ V+HL P H + A+H + * R V E+P+H +P V PL ++T LLS+P + +L++ IK H D P V+ R+V+TI+ Subject 891 KQFEVRGILCFLALLRLEYHTRWLTVRLCLFEAELDR*TESTVVAKHA*STCFDTLTLCKVFD*DVIHN*VDHLGPPRPRRHATSLAKHAAVRI*DRRVDEVPNHTIPNVTPLLAITFRHLLSLPRFPLNILTKNIKCHAD*PRRYLGVEARKVETIE 1364
Range 5: 884 to 1201 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 38/106(36%) | 0/106(0%) | Minus/Plus |
Query 182 RNTLWSGLLFF*HERASLDDPCGV*YTQTEHRLRVLEWREGLKA*RC*VAQRMGLHGVVFHKHSDINARWADVPQISRCAIRLLVYADG*LRRELYISVLPNHVSG 499 R++LWS L H+ L +P G+*Y+ +E+ + + REG+ * VA R+G +G+V H+H+ + + V Q + A ++V DG L EL++S +P VSG Subject 884 RDSLWSRLFELRHQGTFLVNPRGI*YSSSEY*VGNVARREGV*T*SPKVA*RLGWYGLVLHQHAYLKS*RPHVSQETWRAFWVVVDPDGRLSCELHLSRIPYRVSG 1201
Range 6: 895 to 1248 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 45/118(38%) | 0/118(0%) | Minus/Plus |
Query 135 MVWTSLLLTRKSQLG*SVWRLIYSDRT*TSSTGMERRSQSVTLLSGATYGTPWCGIS*TLRY*CQMGGCSANIEVCHQAPGLRRWLTPS*IIY*CPT*PRVRTLKSGISRC*GMTVLS 488 MV T T + LG*S W LI+ R + G ERR +V SG T+G W G S T * C A C G RW T *I * T VR K C TVLS Subject 895 MVSTFRASTPRYLLG*SAWHLIFFVRILSGKRGKERRCLNVIAKSGVTFGMVWFGTSSTRLS*ILTAACFARDVACLLGRGGPRWSTQL*ITS*SNTLQSVRVSKHVDYACLATTVLS 1248
Range 7: 892 to 1206 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 37/105(35%) | 0/105(0%) | Plus/Minus |
Query 177 QRPDTWLGRTLIYNSRRSQPSA*TRSLMAHLDICGTSAHLALISECL*NTTPWSPIRCAT*QRHALRPSLHSSTRSLCSV*VYQTPHGSSKLALSCQKKRSPDHK 491 + PDT G L NS+ S+PS T + A C T L C *+T P+ P R AT H PSL ++ + S YQ P G +K C+ +S DH+ Subject 892 RHPDTL*GIRLRCNSQLSRPSGSTTTQKARHVSCETCGRQDLR*AC**STKPYHPKRYATFGDHV*TPSLLATFPTQYSDEEYQMPRGLTKKVPWCRSSKSRDHR 1206