Queries
Nucleotide Sequence (412 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds
Range 1: 2347 to 2712 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.0 bits(238) | 0.0 | 50/122(41%) | 0/122(0%) | Plus/Plus |
Query 45 EVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDRLPENQLSESMTESQIEAGGYPKITSGHQIHYTYSEVQKSTPRDKHSRVNDLAR 410 E SV+GV M G+++ + +F+A I QY++T+SKAML TRHFS LYES +D P + L+RDR P +E+MT Q+E KI+ H H+T +V KS R + R +R Subject 2347 EASKSVYGVTMSGLVIANGKAKFFFASIKQYLLTQSKAMLIAMTRHFSSLYESYAYDDPTSPVNLFRDRFPGRSENEAMTFKQMEELPKSKISGAHHFHFTPMQVLKSIGRGRLERAIQASR 2712
Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77
Range 1: 2455 to 2664 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 25/70(36%) | 0/70(0%) | Plus/Plus |
Query 42 SEVVASVFGVAMLGVMLQGVEKSYFYAKIDQYIITRSKAMLAIFTRHFSGLYESVLWDTPLNTKALYRDR 251 +EV +FG V ++ + + Y KIDQ +T A+ I +RH+S LYESV + P++ L+R R Subject 2455 TEVNTLLFGTITPAVHIKVGQLNCLYLKIDQCCVTTHPALNIILSRHYSQLYESVDFVNPMSDSMLFRKR 2664
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Nucleotide Sequence (529 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds
Range 1: 4051 to 4512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 71/154(46%) | 0/154(0%) | Minus/Plus |
Query 48 GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIKPGPAGRLEVEVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL 509 GM+ II+ LR +YY RQ+V+C T +E Y+IKN HRV GGISE D+ + LI + V +P L GV+EYA E+ K L + ++ + DR+ AT AV+ K RKM I+ Q +++ IYKA KG YGKAALVGFAL+VL Subject 4051 GMANDIISGLREQYYMRQSVLCDTDVEDIYLIKNAHRVVGGISEEKDSKMGVLITSQLRAQKNVSIPYLPGVNEYANEIHKALKINVSIKTICDRLYDATYEAVSIKDRKMKILRENRDQWFVNVRRIYKAHKGSQLSQNYGKAALVGFALEVL 4512
Range 2: 4083 to 4388 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.8 bits(109) | 0.0 | 36/102(35%) | 0/102(0%) | Plus/Minus |
Query 172 IFIFLDFGVTADSVAIXXXXXXXXXXFIMSNVFATSIAYSCTPASLGTSTSSLPAGPGLISCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLS 477 IFI TA VA LS + N S AYS TP G T +I S +S +PP TLC F I +S V +T CL *Y S Subject 4083 IFILRSLIETASYVASYNLSHIVLIDTFIFNALCISFAYSFTPGKYGIDTFFCALSWDVIKTPIFESFSSLIPPTTLCAFFIKYMSSTSVSHSTLCLM*YCS 4388
Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 4232 to 4492 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 29/87(33%) | 0/87(0%) | Minus/Plus |
Query 48 KLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL 308 KL G+ YA E+ +L + + + + +RV+ ATL+AV + ++++ N +++ S+ L+A+YK++ D +GKA + GF +DVL Subject 4232 KLPGLDSYADELIASLGLSRHRKKVRERVQQATLNAVQLVRKAISVVSNVDMKRSRVLRALYKSYADVADSPMFGKAKMTGFVIDVL 4492
Range 2: 4031 to 4195 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
52.4 bits(108) | 0.0 | 22/55(40%) | 0/55(0%) | Minus/Plus |
Query 345 GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQLIK 509 G S+ +IT LR +YY A + +E Y IK H+V GG S DA + +IK Subject 4031 GGSMDLITRLRDKYYQHVAPIYNATVEIAYKIKQAHKVVGGASRLADASINYIIK 4195
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 4200 to 4457 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.0 bits(118) | 0.0 | 29/86(34%) | 0/86(0%) | Minus/Plus |
Query 48 LAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVTPKSRKMNIIPNPNIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVL 305 L GV YA + K L++ V ++ R+R ATL+AV + + + N+Q +A+Y+A+ + +GKA L GF DVL Subject 4200 LPGVDAYARLLKKVLELEVPVSVVSTRIRNATLNAVQLTRKTVTVEKTLNVQRYMVYRALYRAYADVTNNPMFGKAMLTGFIFDVL 4457
Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77
Range 1: 4525 to 4644 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.0 bits(94) | 0.0 | 17/40(42%) | 0/40(0%) | Minus/Plus |
Query 39 NIQASKHLKAIYKAFKGKVDVAGYGKAALVGFALDVLQWR 158 ++Q ++K IYKA KG++ V+ YGKA L G+ +++L+ R Subject 4525 SVQDRLNMKKIYKAHKGEIKVSQYGKAVLTGYGMELLRSR 4644
Range 2: 4168 to 4323 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 20/52(38%) | 0/52(0%) | Minus/Plus |
Query 354 GMSLQIITNLRLRYYARQAVVCKTPIEAFYVIKNTHRVAGGISEAHDADVEQ 509 G S++ I +R YY + A + K+ ++ Y IK+ HRV GGIS+ A V++ Subject 4168 GASIRKIARIREVYYHKLAGIFKSEVDTMYAIKSIHRVNGGISQDMYAAVDR 4323
Range 3: 4366 to 4488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 15/41(37%) | 0/41(0%) | Minus/Plus |
Query 195 EVPKLAGVHEYAIEVAKTLDMMKDVELLVDRVRMATLSAVT 317 E+PKL G+H+YA VAK L + V+ + +++ +T +V+ Subject 4366 ELPKLPGIHDYADYVAKVLPIESKVKKMCEKLTKSTQDSVS 4488
Range 4: 4167 to 4325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.5 bits(69) | 0.0 | 23/53(43%) | 0/53(0%) | Plus/Minus |
Query 352 SCSTSAS*ASEMPPATLCVFLIT*KASMGVLQTTACLA*YLSLRLVIICRLIP 510 S ST+A + EMPP TLC+ LI S L A L * SL I L P Subject 4167 SLSTAAYMSCEMPPFTLCMDLIAYIVSTSDLNMPASLW**TSLMRAIFLMLAP 4325
Nucleotide Sequence (348 letters)
Query ID: | ds2016-58_76 |
Query definition: | No definition line |
Query length: | 489 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
133.9 | 133.9 | 31% | 5.58e-31 | 50% | NC_028486 | |
170.1 | 371.0 | 22% | 6.973e-42 | 36% | NC_020903 | |
144.5 | 144.5 | 30% | 3.751e-34 | 53% | NC_033465 | |
160.1 | 326.8 | 17% | 7.551e-39 | 38% | NC_028483 | |
152.7 | 206.0 | 32% | 1.234e-36 | 31% | NC_033468 |
Alignments
Red clover powdery mildew-associated totivirus 6 genomic RNA, complete genome, isolate: RPaTV6_75-22
Range 1: 3638 to 3964 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 54/109(50%) | 0/109(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQINH 327 GK+RAIYG D TS++L+NF M +CE L FP+ +AA +V +RV+ VL + +PYC DFEDFNSQHS +AM+AV+LA+G+V ++ +Q A +WT I Q H Subject 3638 GKMRAIYGTDVTSFVLTNFCMGDCEEFLEPVFPLKEAATLSHVKARVKDVLNNGVPYCFDFEDFNSQHSGDAMEAVLLAFGEVCEDMMSHEQRAAFEWTCGSIGKQTIH 3964
Xanthophyllomyces dendrorhous virus L1A capsid protein (CP) and RNA-dependent RNA polymerase (RdRp) genes, complete cds
Range 1: 3298 to 3618 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 69/107(64%) | 0/107(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISNQI 321 GK RAIYG D TSY+LSNFA YNCENVLPN+FPVG+ AND NVV+RV VL +R+P+CLDFEDFNSQHS MKAV+ AY + F LT +Q +A WTA + QI Subject 3298 GKQRAIYGTDLTSYVLSNFAFYNCENVLPNQFPVGRDANDENVVNRVSGVLNNRMPFCLDFEDFNSQHSSGNMKAVIYAYIETFIDCLTPEQEQAAMWTAASLDKQI 3618
Range 2: 3306 to 3452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
66.6 bits(139) | 0.0 | 33/49(67%) | 0/49(0%) | Minus/Minus |
Query 9 FRTARTLDTTFLSFAALPTGNLLGNTFSQLYMAKLDSM*LVVSAPYIAL 155 F T TL TTF S A+ PTGN G+TFSQL AKLDS *LV S PYIAL Subject 3306 FSTPETLFTTFSSLASRPTGN*FGSTFSQL*NAKLDST*LVRSVPYIAL 3452
Range 3: 3455 to 3496 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.1 bits(42) | 0.0 | 9/14(64%) | 0/14(0%) | Minus/Minus |
Query 158 DY*SPQSPSSMAAC 199 DY*SPQS A C Subject 3455 DY*SPQSQDRKAFC 3496
Range 4: 3313 to 3597 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 34/95(36%) | 0/95(0%) | Minus/Minus |
Query 16 CCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY 300 C P R L S+ E + +S + H +LTIEVLKV+ V+ + HHV V+ + K + *++ T+V +IRQYVA +IC +Y Subject 3313 CGPHCRLLLFRSKTIYESLDISVYYSLHVARAVLTIEVLKVKTERHSVI*HSRNSVHHVFVIGISSDWKLIW*YVLTIVKREIRQYVASQICPIY 3597
Range 5: 3314 to 3499 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 26/62(42%) | 0/62(0%) | Plus/Plus |
Query 17 YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTSIVS 202 Y QI ATYCLI T V+ Y F+ + T+TW + * T C + TLRTSIV+ Subject 3314 YMGQI*LATYCLISRFTIVRTYYQINFQSDEMPMTKTW*TEFREC*ITECLSVLTLRTSIVN 3499
Wuhan insect virus 26 strain WHZM10161 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 3243 to 3557 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 56/105(53%) | 0/105(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPISN 315 GK+RAIYG D TSY+L+++A +NCE+ LP FPVG+ A V +RV A+L+ +P C+DFEDFNSQHS +AM+AVV AY D +++ +T +Q++A WT + ISN Subject 3243 GKMRAIYGTDLTSYVLAHYAFFNCEDTLPTDFPVGEKARPSFVSARVAAILEGTVPLCVDFEDFNSQHSNDAMEAVVQAYIDAYSQYMTPEQVQAAMWTRESISN 3557
Red clover powdery mildew-associated totivirus 3 genomic RNA, complete genome, isolate: RPaTV3_75-77
Range 1: 3415 to 3723 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
160.1 bits(343) | 0.0 | 66/103(64%) | 0/103(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPI 309 GK RAIYG D TSY+LSNFAMY CE+VLP+ FPVG A++ NV +RV VL +R+P C+DFEDFNSQHS EAM+AV+ AY DVF+ LT +Q AL+WTA I Subject 3415 GKQRAIYGTDLTSYVLSNFAMYACESVLPSAFPVGPDADEANVAARVGGVLNNRMPLCIDFEDFNSQHSVEAMQAVLDAYSDVFDHLLTVEQKYALRWTAQSI 3723
Range 2: 3430 to 3690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 33/87(38%) | 0/87(0%) | Minus/Minus |
Query 16 LIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVY 276 L+ S++ V++++V N H F +L +EV KV PV+ N + H+ V + HR+ *H FT VHG++RQ V C I S+Y Subject 3430 LLHSQQVVKHVAVGV*NRLHCFDRVLAVEVFKVYT*RHPVV*NPTDARGHICFVRIWPHRESGR*HRFTSVHGEVRQNV*C*IRSIY 3690
Range 3: 3431 to 3607 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 23/59(39%) | 0/59(0%) | Plus/Plus |
Query 17 YTEQIRQATYCLILPCTTVKMCYPTGFRWVKQQTTETWCQGYERF*RTGCHTAWTLRTS 193 Y E+I T+C PCT V CY W + +T + W + F* TGC TL+TS Subject 3431 YMERI*HHTFCRTSPCTLVNRCYRPLSLWGQMRTKQMWPRASVGF*TTGCLYV*TLKTS 3607
Wuhan insect virus 27 strain WHZM10130 hypothetical protein 1 and hypothetical protein 2 genes, complete cds
Range 1: 3278 to 3586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 60/103(58%) | 0/103(0%) | Plus/Plus |
Query 1 GKLRAIYGADTTSYILSNFAMYNCENVLPNRFPVGKAANDRNVVSRVRAVLKDRLPYCLDFEDFNSQHSPEAMKAVVLAYGDVFNKTLTEDQMRALQWTADPI 309 GKLRAIYG D TSY+LS+FA YNCE+VLP FPVGK A V SR+R++L +P+C+DFEDFNSQHS E+M AV+ AY +V+ ++ +++Q+ ALQWT I Subject 3278 GKLRAIYGTDLTSYVLSHFAFYNCEDVLPAHFPVGKKARPSYVRSRIRSILSGSIPFCIDFEDFNSQHSNESMIAVIEAYLEVYQESFSKEQIMALQWTIQSI 3586
Range 2: 3290 to 3586 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
53.3 bits(110) | 0.0 | 31/99(31%) | 0/99(0%) | Minus/Minus |
Query 13 YWVCCPLKRPHLIFSERFVEYISVSQHNGFHGFGTMLTIEVLKVQAVWQPVLQNRSYP*HHVSVVCCFTHRKPVG*HIFTVVHGKIRQYVACRICSVYS 309 Y + CPL+ +L + + Y V + HG +LT+E+ K+ W + S * ++ C T K HI VV GK+ QYV +I S+ S Subject 3290 YTLYCPLQSHNLFLGK*LLVYFEVCFDHCNHGLV*VLTVEIFKIYTEWYATT*D*SDS*PNIGWSCFLTDWKMSWEHILAVVEGKM*QYV*SKIRSINS 3586