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Queries

Nucleotide Sequence (468 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
47
94
141
188
235
282
329
376
423
468

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
240.7 240.7 24% 2.726e-69 100% AQN80517

Alignments

replicase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AQN80517.1| Length: 2161 Number of Matches: 1

Range 1: 1710 to 1822 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.7 bits(613) 0.0 113/113(100%) 0/113(0%) Plus/Plus
Query      130  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  468
                WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP
Subject   1710  WFKTHIPLSNLESTRARWVGKMALKEHREVRCGYETTQQFFDEHRCGRSEQLSNACERFESIYPRHKGNDSVTFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDTFLSKVP  1822

Nucleotide Sequence (561 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
561

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
379.0 379.0 32% 2.949e-117 99% CCD41769

Alignments

RNA-dependent RNA polymerase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: emb|CCD41769.1| Length: 2161 Number of Matches: 1

Range 1: 992 to 1173 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
379.0 bits(972) 0.0 180/182(99%) 0/182(0%) Minus/Plus
Query       11  VETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRYHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN  556
                +ETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIR+HVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN
Subject    992  IETDYGPKVLGSFEVFKGDFHIKKMEEGSIFVITYKAPIRSTGRLRVHSSECSFSGSKEVLLGCQIEACADYDIDDFNTFSVPGDGNCFWHSVGFLLSTDGLALKAGIRSFVESERLVNPDLSAPAISKQLEENAYAENEMIALFCIRHHVRLIVITPEYEVSWKFGEGEWPLCGILCLKSN  1173

Nucleotide Sequence (593 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
60
120
180
240
300
360
420
480
540
593

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
376.7 376.7 33% 2.468e-116 97% AAC62910

Alignments

RNA-dependent RNA polymerase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AAC62910.1| Length: 2161 Number of Matches: 1

Range 1: 1701 to 1896 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
376.7 bits(966) 0.0 190/196(97%) 0/196(0%) Minus/Plus
Query        2  QESECSNEEWFKTHIPLSNLESTRARRVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNPIMFDEAVREFXXXXXXXXXATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ  589
                 ESECSNEEWFKTHIPLSNLESTRAR VGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHN IMF EAV+EFEAK+ASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ
Subject   1701  MESECSNEEWFKTHIPLSNLESTRARWVGKMALKEYREVRCGYEVTQQFFDEHRGGTGEQLSNACERFESIYPRHKGNDSITFLMAVRKRLKFSKPQVEAAKLRRAKPYGKFLLDSFLSKIPLKASHNSIMFQEAVQEFEAKKASKSAATIENHAGRSCRDWLLDVALIFMKSQHCTKFDNRLRVAKAGQTLACFQ  1896

Nucleotide Sequence (390 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
39
78
117
156
195
234
273
312
351
390

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
124.8 124.8 20% 1.103e-33 99% NP_047284

Alignments

8.4 kDa protein [Rupestris stem pitting-associated virus]

Sequence ID: ref|NP_047284.1| Length: 80 Number of Matches: 1

See 6 more title(s)

Range 1: 2 to 80 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
124.8 bits(312) 0.0 78/79(99%) 0/79(0%) Plus/Plus
Query        3  YCLFXXXXXXXXXXXXXXXXHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEMLGGLKALGVSRAVEEIDYHC  239
                YCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKE+LGGLKALGVSRAVEEIDYHC
Subject      2  YCLFGILVLVGIVIAIQILAHVDSSSGNHQGCFIRATGESILIENCGPSEALASTVKEVLGGLKALGVSRAVEEIDYHC  80

Nucleotide Sequence (640 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
64
128
192
256
320
384
448
512
576
640

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
209.1 209.1 16% 1.843e-63 100% BAF34860

Alignments

24.4 kDa hypothetical protein [Grapevine rupestris stem pitting-associated virus]

Sequence ID: dbj|BAF34860.1| Length: 221 Number of Matches: 1

Range 1: 1 to 103 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
209.1 bits(531) 0.0 103/103(100%) 0/103(0%) Plus/Plus
Query      331  MNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  639
                MNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ
Subject      1  MNNLVKALSAFEFVGVFSVLKFPVVIHSVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  103

Nucleotide Sequence (348 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
348

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
155.2 155.2 22% 4.822e-44 95% AQN80518

Alignments

triple gene block protein 1 [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AQN80518.1| Length: 221 Number of Matches: 1

Range 1: 145 to 221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
155.2 bits(391) 0.0 73/77(95%) 0/77(0%) Minus/Plus
Query      116  IIGSPFELAVEGVLICFGKEAVDLAVAHNSNFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ  346
                I GSPFEL VEGVLICFGKEAVDLA AHNS+FKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ
Subject    145  ITGSPFELDVEGVLICFGKEAVDLAAAHNSDFKLPCEVRGATFDVVTLLKSRDPTSDDKHWFYIAATRHRKKLIIMQ  221

Nucleotide Sequence (615 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
62
124
186
248
310
372
434
496
558
615

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
241.1 241.1 20% 4.252e-76 96% BAF34850

Alignments

24.4 kDa hypothetical protein [Grapevine rupestris stem pitting-associated virus]

Sequence ID: dbj|BAF34850.1| Length: 221 Number of Matches: 1

Range 1: 1 to 121 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
241.1 bits(614) 0.0 116/121(96%) 0/121(0%) Minus/Plus
Query        6  MNNLVKALSTFEFVGVYSVLRFPVVVHSVPGSGKSSLIRELITEDESFTAFTAGVPDTPNLSGRYIKPYSPGCAVKGRINILDEYLSVDDISGFDVLFSDPYQNISVPREAHFIKSKTCRF  368
                MNNLVKALSTFEFVG+YSVLRFPVVVHSVPGSGKSSLIREL+TEDESF AFTAGVPDTPNLSGRYIKPYSPGCAVKG+INILDEYLSV DISGFDVLFSDPYQNISVPREAHFIKSKTCRF
Subject      1  MNNLVKALSTFEFVGIYSVLRFPVVVHSVPGSGKSSLIRELVTEDESFIAFTAGVPDTPNLSGRYIKPYSPGCAVKGKINILDEYLSVSDISGFDVLFSDPYQNISVPREAHFIKSKTCRF  121

Nucleotide Sequence (354 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
36
72
108
144
180
216
252
288
324
354

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
240.3 240.3 33% 6.442e-70 98% AQN80517

Alignments

replicase [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AQN80517.1| Length: 2161 Number of Matches: 1

Range 1: 1357 to 1473 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
240.3 bits(612) 0.0 115/117(98%) 0/117(0%) Plus/Plus
Query        2  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKKDLEMDEECKVAKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD  352
                TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIK+DLEMDEECKV KAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD
Subject   1357  TFGAGKSFLYKSFMKRSEGKFVTFVSPRRALANSIKRDLEMDEECKVVKAGKSKKEGWDVVTFEVFLRKVTGLKAGHCVIFDEVQLFPPGYIDLCLLVIRSDAFISLAGDPCQSTYD  1473

Nucleotide Sequence (440 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
440

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
152.5 152.5 16% 1.73e-42 100% AAC62911

Alignments

triple gene block [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AAC62911.1| Length: 221 Number of Matches: 1

Range 1: 151 to 221 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
152.5 bits(384) 0.0 71/71(100%) 0/71(0%) Plus/Plus
Query       45  TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ  257
                TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ
Subject    151  TLDVEGVLICFGKEAVDLAVAHNSEFKLPCEVRGSTFNVVTLLKSRDPTPEDRHWFYIAATRHREKLIIMQ  221

Nucleotide Sequence (404 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
41
82
123
164
205
246
287
328
369
404

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
281.6 281.6 33% 3.563e-93 99% CAJ55435

Alignments

coat protein, partial [Grapevine rupestris stem pitting-associated virus]

Sequence ID: emb|CAJ55435.1| Length: 223 Number of Matches: 1

Range 1: 68 to 201 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
281.6 bits(719) 0.0 133/134(99%) 0/134(0%) Minus/Plus
Query        1  DVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK  402
                +VMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK
Subject     68  NVMDEGAIDELIRAFGESGIAESVQFDVAIDIARHCSDVGSSQRSTLIGKSPFCDLNRSEIAGIIREVTTLRRFCMYYAKIVWNIHLETGIPPANWAKKGFNENEKFAAFDFFLGVTDESALEPKGGIKRAPTK  201

Nucleotide Sequence (230 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
23
46
69
92
115
138
161
184
207
230

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
147.1 147.1 33% 1.215e-41 95% AAC62911

Alignments

triple gene block [Grapevine rupestris stem pitting-associated virus]

Sequence ID: gb|AAC62911.1| Length: 221 Number of Matches: 1

Range 1: 28 to 103 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.1 bits(370) 0.0 72/76(95%) 0/76(0%) Minus/Plus
Query        2  SVPGSGKSSLIRELISEDENFIAFTAGVPDSRNLTGRFIKSYSAGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  229
                SVPGSGKSSLIRELISEDENFIAFTAGVPDS NLTGR+IK YS GCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ
Subject     28  SVPGSGKSSLIRELISEDENFIAFTAGVPDSPNLTGRYIKPYSPGCAVPGKVNILDEYLSVQDFSGFDVLFSDPYQ  103

Nucleotide Sequence (449 letters)

Query ID:ds2016-56_75
Query definition:No definition line
Query length:366
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 12 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
45
90
135
180
225
270
315
360
405
449

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
288.9 288.9 33% 2.492e-86 96% NP_047281

Alignments

replicase [Rupestris stem pitting-associated virus]

Sequence ID: ref|NP_047281.1| Length: 2161 Number of Matches: 1

See 1 more title(s)

Range 1: 537 to 685 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
288.9 bits(738) 0.0 143/149(96%) 0/149(0%) Minus/Plus
Query        2  LEATGQSKLFRFLVDDCVMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCDVIKVYQFVTSQAILPEALLSLTKVFVRDSDSKGVSIPILVSRNELNELALPANSALEEPQSVDCNAGRVQASVSSS  448
                LEATGQSKLFRFLVDDC MREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDC+VIKVYQ VTSQAILPEALLSLTKVFVRDSDSKGVSIP LVSRNEL ELA PANSALEEPQSVDCNAGRVQASVSSS
Subject    537  LEATGQSKLFRFLVDDCAMREVRSSYKVGLFKHIKALTHCFNSCGLQWFLLRQRSNLKFLKDRASSFADLDCEVIKVYQLVTSQAILPEALLSLTKVFVRDSDSKGVSIPRLVSRNELEELAHPANSALEEPQSVDCNAGRVQASVSSS  685