Nucleotide Sequence (621 letters)
Query ID: | ds2016-58_48 |
Query definition: | No definition line |
Query length: | 589 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
81.3 | 81.3 | 20% | 1.332e-13 | 29% | AB569998.1 | |
81.3 | 81.3 | 20% | 1.332e-13 | 29% | NC_020235.1 | |
88.1 | 88.1 | 19% | 1.136e-15 | 31% | LC076695.1 | |
82.2 | 118.5 | 27% | 5.016e-19 | 32% | GQ280378.1 | |
82.2 | 118.5 | 27% | 5.016e-19 | 32% | NC_013015.1 |
Alignments
Rosellinia necatrix partitivirus 2 CP gene for capsid protein, complete cds
Sequence ID: AB569998.1 Length: 1828 Number of Matches: 1
Range 1: 381 to 758 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 37/126(29%) | 0/126(0%) | Plus/Plus |
Query 3 HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIPKK 380 H+ I + + + F+P+A M+ +I+ M L + + +P Y L +R Y+ I+F +QTLRA+ + L + +L FL + +LPI PL+ F ++ + P QY +V P +P++ Subject 381 HMTIQYASRKKNNTFLPSAFMMMYIIHEMNVLLCEHFYFKREAPNYHPLLLRTYFGILFIIQTLRAQHAANNLFGDQFEFLEKFLDAYPVDTLPIPAPLIHIFKSLCSSRPEIPQYGYVTPFVPEE 758
Rosellinia necatrix partitivirus 2 CP gene for capsid protein, complete cds
Sequence ID: NC_020235.1 Length: 1828 Number of Matches: 1
Range 1: 381 to 758 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 37/126(29%) | 0/126(0%) | Plus/Plus |
Query 3 HVRIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTIPKK 380 H+ I + + + F+P+A M+ +I+ M L + + +P Y L +R Y+ I+F +QTLRA+ + L + +L FL + +LPI PL+ F ++ + P QY +V P +P++ Subject 381 HMTIQYASRKKNNTFLPSAFMMMYIIHEMNVLLCEHFYFKREAPNYHPLLLRTYFGILFIIQTLRAQHAANNLFGDQFEFLEKFLDAYPVDTLPIPAPLIHIFKSLCSSRPEIPQYGYVTPFVPEE 758
Rosellinia necatrix partitivirus 7 genomic RNA, segment 2, complete sequence, strain: W1142
Sequence ID: LC076695.1 Length: 1896 Number of Matches: 1
Range 1: 430 to 792 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 37/121(31%) | 0/121(0%) | Plus/Plus |
Query 9 RIPLKNFDEKSFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYPTI 371 R+ ++ + +++VP+A+ LF +L E+ +N ++ ++ P Y V+VYYA ++Y+Q RAK +SG +E +E L+ F ++F SLP A + YF+++ ++ +Y+++ P I Subject 430 RMIAEHHPQTNYYVPSAIPLFSLLEAAEDRINASKHIQQHEPNYNPYAVKVYYAYMYYMQIFRAKRESGHIEGSELKILKRFEQKFPLNSLPCAEIVYGYFSSLHATELAESKYDWIVPRI 792
Sclerotinia sclerotiorum partitivirus S segment 2, complete sequence
Sequence ID: GQ280378.1 Length: 1852 Number of Matches: 2
Range 1: 450 to 776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 36/109(33%) | 0/109(0%) | Plus/Plus |
Query 39 SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYP 365 S + P+ ++ +L M + + N LR P Y +YY IIF +Q LRA + + L +A+ +LR F F LP+AGPLV +F N+ P +++ +V P Subject 450 STYTPSCWSMYAVLDAMHDLVGDNASLRRFCPYYHVALSNIYYGIIFIIQVLRANQVANNLSQADFQFLRFFESNFALEELPVAGPLVLFFQNLAAFKPDGNRFNWVVP 776
Range 2: 804 to 974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 18/57(32%) | 0/57(0%) | Plus/Plus |
Query 411 GQRLPNVTSAHYLIPSVPIIASLLKDFCTTPTIGNSKFDDDGNYIPFQLTVGGTFAG 581 G P V + +P +P + SLL F + + D G + PF GGT AG Subject 804 GANSPRVNAQSTALPQLPQMISLLNLFGASNAALLTAMDTAGQWEPFTFAAGGTIAG 974
Sclerotinia sclerotiorum partitivirus S segment 2, complete genome
Sequence ID: NC_013015.1 Length: 1852 Number of Matches: 2
Range 1: 450 to 776 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
82.2 bits(173) | 0.0 | 36/109(33%) | 0/109(0%) | Plus/Plus |
Query 39 SFFVPNALMLFHILFNMEETLNGNEDLRWTSPKYFSLPVRVYYAIIFYVQTLRAKEQSGKLEKAEGSWLRAFLRRFKDTSLPIAGPLVPYFTNIVTVLPSDDQYEFVYP 365 S + P+ ++ +L M + + N LR P Y +YY IIF +Q LRA + + L +A+ +LR F F LP+AGPLV +F N+ P +++ +V P Subject 450 STYTPSCWSMYAVLDAMHDLVGDNASLRRFCPYYHVALSNIYYGIIFIIQVLRANQVANNLSQADFQFLRFFESNFALEELPVAGPLVLFFQNLAAFKPDGNRFNWVVP 776
Range 2: 804 to 974 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.3 bits(73) | 0.0 | 18/57(32%) | 0/57(0%) | Plus/Plus |
Query 411 GQRLPNVTSAHYLIPSVPIIASLLKDFCTTPTIGNSKFDDDGNYIPFQLTVGGTFAG 581 G P V + +P +P + SLL F + + D G + PF GGT AG Subject 804 GANSPRVNAQSTALPQLPQMISLLNLFGASNAALLTAMDTAGQWEPFTFAAGGTIAG 974