Nucleotide Sequence (218 letters)
Query ID: | ds2016-56_135 |
Query definition: | No definition line |
Query length: | 156 |
Program: | TBLASTX 2.2.29+ |
Database: | /home/stheil/save/db/all_vir/all_vir_nucl.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
159.1 | 869.1 | 28% | 6.697e-38 | 91% | GQ865602.1 | |
158.2 | 848.5 | 28% | 1.264e-37 | 89% | JQ267586.1 | |
157.3 | 856.7 | 28% | 2.386e-37 | 89% | HQ130295.1 | |
157.3 | 856.7 | 28% | 2.386e-37 | 89% | HQ130300.1 | |
157.3 | 856.7 | 28% | 2.386e-37 | 89% | HQ130301.1 |
Alignments
Grapevine leafroll associated virus isolate KHCP2 coat protein gene, complete cds
Sequence ID: GQ865602.1 Length: 1428 Number of Matches: 7
Range 1: 115 to 327 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
159.1 bits(341) | 0.0 | 65/71(92%) | 0/71(0%) | Plus/Minus |
Query 6 RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH 218 RCS SCCGEYV F HYSDS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH Subject 115 RCSQSCCGEYVFFGHYSDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH 327
Range 2: 117 to 302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Minus |
Query 31 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF 216 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF Subject 117 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF 302
Range 3: 116 to 328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 66/71(93%) | 0/71(0%) | Plus/Minus |
Query 5 PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS 217 PL* KLLWRIR F ALQRF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS Subject 116 PL*PKLLWRIRIFRALQRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS 328
Range 4: 116 to 328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
144.5 bits(309) | 0.0 | 65/71(92%) | 0/71(0%) | Minus/Plus |
Query 5 *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR 217 *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ESL*C K+TYSPQQL LQR Subject 116 *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESL*CPKNTYSPQQLWLQR 328
Range 5: 115 to 303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.1 bits(301) | 0.0 | 61/63(97%) | 0/63(0%) | Minus/Plus |
Query 30 VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 218 VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF Subject 115 VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 303
Grapevine leafroll associated virus 3 isolate SK04 HSP90 like protein gene, partial cds; coat protein, divergent coat protein, and 21 kDa protein genes, complete cds; and 19.6 kDa protein gene, partial cds
Sequence ID: JQ267586.1 Length: 3477 Number of Matches: 7
Range 1: 230 to 442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
158.2 bits(339) | 0.0 | 64/71(90%) | 0/71(0%) | Plus/Minus |
Query 6 RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH 218 RCS SCCGEYV+F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH Subject 230 RCSQSCCGEYVIFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH 442
Range 2: 231 to 443 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.9 bits(312) | 0.0 | 65/71(92%) | 0/71(0%) | Plus/Minus |
Query 5 PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS 217 PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS Subject 231 PL*PKLLWRIRNFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS 443
Range 3: 232 to 417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
142.7 bits(305) | 0.0 | 59/62(95%) | 0/62(0%) | Plus/Minus |
Query 31 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF 216 NT FSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF Subject 232 NT*FSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF 417
Range 4: 231 to 443 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
139.9 bits(299) | 0.0 | 64/71(90%) | 0/71(0%) | Minus/Plus |
Query 5 *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR 217 *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K TYSPQQL LQR Subject 231 *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKITYSPQQLWLQR 443
Range 5: 230 to 418 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.8 bits(296) | 0.0 | 60/63(95%) | 0/63(0%) | Minus/Plus |
Query 30 VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 218 VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPE YVF Subject 230 VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPENYVF 418
Grapevine leafroll associated virus 3 isolate 6 6 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds
Sequence ID: HQ130295.1 Length: 4711 Number of Matches: 7
Range 1: 108 to 320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 64/71(90%) | 0/71(0%) | Plus/Minus |
Query 6 RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH 218 RCS SCCGEYV F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH Subject 108 RCSQSCCGEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH 320
Range 2: 110 to 295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Minus |
Query 31 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF 216 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF Subject 110 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF 295
Range 3: 109 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 65/71(92%) | 0/71(0%) | Plus/Minus |
Query 5 PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS 217 PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS Subject 109 PL*PKLLWRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS 321
Range 4: 109 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 64/71(90%) | 0/71(0%) | Minus/Plus |
Query 5 *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR 217 *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K+TYSPQQL LQR Subject 109 *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSPQQLWLQR 321
Range 5: 108 to 296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.1 bits(301) | 0.0 | 61/63(97%) | 0/63(0%) | Minus/Plus |
Query 30 VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 218 VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF Subject 108 VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 296
Grapevine leafroll associated virus 3 isolate 6 18 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds
Sequence ID: HQ130300.1 Length: 4711 Number of Matches: 7
Range 1: 108 to 320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 64/71(90%) | 0/71(0%) | Plus/Minus |
Query 6 RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH 218 RCS SCCGEYV F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH Subject 108 RCSQSCCGEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH 320
Range 2: 110 to 295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Minus |
Query 31 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF 216 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF Subject 110 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF 295
Range 3: 109 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 65/71(92%) | 0/71(0%) | Plus/Minus |
Query 5 PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS 217 PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS Subject 109 PL*PKLLWRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS 321
Range 4: 109 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 64/71(90%) | 0/71(0%) | Minus/Plus |
Query 5 *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR 217 *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K+TYSPQQL LQR Subject 109 *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSPQQLWLQR 321
Range 5: 108 to 296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.1 bits(301) | 0.0 | 61/63(97%) | 0/63(0%) | Minus/Plus |
Query 30 VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 218 VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF Subject 108 VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 296
Grapevine leafroll associated virus 3 isolate 6 102 coat protein, divergent coat protein, 21 kDa protein, 19.6 kDa protein, 19.7 kDa protein, 4 kDa protein, and 7 kDa protein genes, complete cds
Sequence ID: HQ130301.1 Length: 4711 Number of Matches: 7
Range 1: 108 to 320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 64/71(90%) | 0/71(0%) | Plus/Minus |
Query 6 RCS*SCCGEYVLFRHYSDSC*FRLCPVLNVL*ETRLTKFSLCRIPFSISQIIFGDDFIYLP*FQFKCHRVH 218 RCS SCCGEYV F HY DS *FRLCPVLNVL*ETRLTKFSLCRIP+S SQIIFGDDFIYLP*FQFKCHRVH Subject 108 RCSQSCCGEYVFFGHYGDSR*FRLCPVLNVL*ETRLTKFSLCRIPYSNSQIIFGDDFIYLP*FQFKCHRVH 320
Range 2: 110 to 295 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 60/62(97%) | 0/62(0%) | Plus/Minus |
Query 31 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPSLSLKLFSGTTSYICPNFSSNAIAF 216 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASP+L+LKLFSGTTSYICPNFSSNAIAF Subject 110 NTYFSGTTAIPVNSACVPSLTYFKKLALLNFPCAASPTLTLKLFSGTTSYICPNFSSNAIAF 295
Range 3: 109 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 65/71(92%) | 0/71(0%) | Plus/Minus |
Query 5 PL*LKLLWRIRTFPALQRFLLIPPVSRP*RTLRNSPY*IFLVPHPLLYLSNYFRGRLHISALISVQMPSRS 217 PL* KLLWRIR F AL+RF LIPPVSRP*RTLRNSPY*IFLVPHPLL LSNYFRGRLHISALISVQMPSRS Subject 109 PL*PKLLWRIRIFRALRRFPLIPPVSRP*RTLRNSPY*IFLVPHPLL*LSNYFRGRLHISALISVQMPSRS 321
Range 4: 109 to 321 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
141.3 bits(302) | 0.0 | 64/71(90%) | 0/71(0%) | Minus/Plus |
Query 5 *TRWHLN*N*GRYMKSSPKII*EIEKGMRHKENLVRRVS*STLRTGHRRN*QESL*CRKSTYSPQQL*LQR 217 *TRWHLN*N*GRYMKSSPKII*E+E GMRHKENLVRRVS*STLRTGHRRN*+ES *C K+TYSPQQL LQR Subject 109 *TRWHLN*N*GRYMKSSPKII*ELE*GMRHKENLVRRVS*STLRTGHRRN*RESP*CPKNTYSPQQLWLQR 321
Range 5: 108 to 296 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.1 bits(301) | 0.0 | 61/63(97%) | 0/63(0%) | Minus/Plus |
Query 30 VNAMAFELKLGQIYEVVPENNLRDREGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 218 VNAMAFELKLGQIYEVVPENNLR R GDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF Subject 108 VNAMAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVF 296