Queries
Nucleotide Sequence (575 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
436.4 | 2469.7 | 31% | 1.055e-121 | 42% | NC_004667 | |
215.5 | 345.0 | 60% | 3.218e-55 | 38% | NC_022072 | |
78.0 | 202.5 | 25% | 7.726e-14 | 28% | NC_016509 | |
61.6 | 115.8 | 23% | 7.138e-09 | 25% | NC_005065 | |
84.0 | 130.4 | 27% | 1.244e-15 | 35% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 15029 to 15595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
436.4 bits(946) | 0.0 | 184/189(97%) | 0/189(0%) | Minus/Minus |
Query 8 ISVIQ*CEVEAVRSEPLRDAVLS*GSIRWLNFLLYK*SNGGVSKIPHEGSHSVGWRRIVFPS*YSFPYFRIT*VDFLLT*FGLHPIPVFDAYILYGRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTS 574 ISVIQ*CEVEAVRSEPLRDAVLS*GS RWLNFLLYK*SN GVSKIPHEGSHSVGWRR VFPS*YSFPYFRIT*VD LLT*FGLHPIPVFDAYILY RVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTS Subject 15029 ISVIQ*CEVEAVRSEPLRDAVLS*GSTRWLNFLLYK*SNSGVSKIPHEGSHSVGWRRTVFPS*YSFPYFRIT*VDSLLT*FGLHPIPVFDAYILYSRVEYEKLYHGHYHIPHISWCLTPAFRKNESA*SCVYL*SFRYRQIPLIVDIRFIDR*H*VWKTYLTLPPSVDQFRYVGR*SHYIQLL*WTYTS 15595
Range 2: 15028 to 15594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
433.6 bits(940) | 0.0 | 186/189(98%) | 0/189(0%) | Plus/Plus |
Query 7 GRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYRKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFYSHHHYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI 573 GRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLY KEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVF SHH+YSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI Subject 15028 GRCRSIRAAGCSGFNVRRNGIDQH*GAR*DMFSRLSVIDQ*SGYLR*AVFADNGSSTDKRKTTQTRSFERRESNTTRYGEYDSGHDTTFRTLLYCKEYKRQRRV*GGDRIRSKESLLKLFGSKGSYIRREIRCVSNQHCAILHEVFCSHHYYSTYREENSASVYCPS*ARRPEEVHSVLLRLRTTG*QI 15594
Range 3: 15029 to 15595 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
433.6 bits(940) | 0.0 | 185/189(98%) | 0/189(0%) | Plus/Plus |
Query 8 GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 574 GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQK+VYLSYSEVREAILGGKY ASPTNTVRSFMRYF HTTITLLIEKKIQPA TALAKHGVPKRFTPYCFDFALLDNRY Subject 15029 GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKRVYLSYSEVREAILGGKYGASPTNTVRSFMRYFAHTTITLLIEKKIQPACTALAKHGVPKRFTPYCFDFALLDNRY 15595
Range 4: 15028 to 15594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
413.0 bits(895) | 0.0 | 184/189(97%) | 0/189(0%) | Minus/Minus |
Query 7 YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPP 573 YLLSSSAKSKQYGVNLFGTPCLARAV+AG*IFFSISRV+VV* KYLMKDRTVLVGDA YFPPNIASLTSE*LK*T F*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPP Subject 15028 YLLSSSAKSKQYGVNLFGTPCLARAVHAG*IFFSISRVIVV*AKYLMKDRTVLVGDAPYFPPNIASLTSE*LK*TLF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPISRGV*LPPFERTSLRSLAFICRASVIGKYRSS*ISASLIDNTESGKHILPCPLVLINSVTSDVKATTSSCSDGPTPP 15594
Range 5: 15027 to 15596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
396.5 bits(859) | 0.0 | 185/190(97%) | 0/190(0%) | Plus/Plus |
Query 6 REV*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLP*RI*ASKTGIGWRPN*VKRKST*VIRK*GKLY*EGNTMRLQPTLCDPS*GIXXXXXXXXXXRRKFSQRILP*LSTASRRGSLRTASTSHYWITDI 575 REV*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTL *RI*ASKTGIGWRPN*VKR+ST*VIRK*GKLY*EGNT+RLQPTLCDPS*GILLTP LLYL*RRKFSQR+LP*LSTASRRGSLRTASTSHYWITDI Subject 15027 REV*VHQSSWM*WL*RPT*RN*STLGGKVRYVFQTQCYRSMKRISTMSGICR*RKLYR*TQDYADSFFRKAGVKHHEIWGI**WP*YNFSYSTLL*RI*ASKTGIGWRPN*VKREST*VIRK*GKLY*EGNTVRLQPTLCDPS*GILLTPLLLYL*RRKFSQRVLP*LSTASRRGSLRTASTSHYWITDI 15596
Range 6: 15027 to 15281 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
199.5 bits(429) | 0.0 | 85/85(100%) | 0/85(0%) | Minus/Minus |
Query 6 WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLHLP 260 WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLHLP Subject 15027 WPLSYSPYLVVFDSRLSKERVCVVLRLSVELPLSANTAHRRYPLH*SITLSLENISYLAP*C*SIPLRRTLKPLHPAALMDLHLP 15281
Range 7: 15423 to 15533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 35/37(95%) | 0/37(0%) | Minus/Minus |
Query 402 A*LGQYTLAEFSSL*VE*WWCE*NTS*RIAQCWLETH 512 A*LGQYTLAEFSSL*VE* WCE NTS*RIAQCWLETH Subject 15423 A*LGQYTLAEFSSL*VE**WCEQNTS*RIAQCWLETH 15533
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 15940 to 16494 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
215.5 bits(464) | 0.0 | 88/185(48%) | 0/185(0%) | Plus/Plus |
Query 20 PSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 574 P+ +L+ + + + +L+ RG+ P+ V +I E+DIYDER++ EAL++N+RL L+ S G + D GN +V +IQLF+LYSTVK+ ++ Y++ L K+V LS+ VR AIL G D S TN VR++MRY+ +T ++LL+ K+QPAYTA AKHGVPKRF P+CFDFA+LD+RY Subject 15940 PTSELEKLQMVGTLDKLVVERGKAIYDTPEKVFNIRESDIYDERFMDKVEALKVNSRLNALMFSLGSDGSVTDKGNFLVGLIQLFLLYSTVKHPTLNPAYKIRITLNGKEVDLSFQAVRRAILDGDDDYSSTNKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRY 16494
Range 2: 16155 to 16493 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.7 bits(172) | 0.0 | 54/113(48%) | 0/113(0%) | Minus/Minus |
Query 235 YLLSSSAKSKQYGVNLFGTPCLARAVYAG*IFFSISRVMVV*VKYLMKDRTVLVGDASYFPPNIASLTSE*LK*TFF*PNSVSTLYPSLTLIFFTVE*STKSCIMATIIFPIS 573 YLLS AKSKQ G NLFGTPCLA AV AG R+ V YL+ RT+LV + S P +IA LT+ LK T F + + LY L++ TV S KS I T FP+S Subject 16155 YLLSRIAKSKQNGRNLFGTPCLAAAV*AGCNLPDSRRLTAVLP*YLIYVRTLLVLE*SSSPSSIALLTAWKLKSTSFPFSVILILYAGLSVGCLTVLYSRKSWIRPTKKFPLS 16493
Grapevine leafroll-associated virus 1, complete genome
Range 1: 15096 to 15410 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 34/105(32%) | 0/105(0%) | Plus/Plus |
Query 248 MIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALL 562 + + MIQ + +ST N+ + +V+ L +K + ++E+R I + N VR +MR+F+ TTI+L+ + P Y +A+HGV +F PY FD+ +L Subject 15096 LAIGMIQGALTWSTSANLKDGEIRKVDVSLNGRKFTVDFNELRHIIQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFDYCIL 15410
Range 2: 13685 to 13882 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.2 bits(136) | 0.0 | 25/66(38%) | 0/66(0%) | Plus/Plus |
Query 356 LSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDF 553 L+Y +V+ A++ G ++ N +R + R F+ T + L++ K++P +HGVPKRF PY FDF Subject 13685 LTYEKVKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDF 13882
Range 3: 16398 to 16829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 41/144(28%) | 0/144(0%) | Plus/Plus |
Query 143 DERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 574 + YL A +I L RL L+ D ++V +IQ V Y T + K V K V L + VR I+ TN +R +MR+++ TI L+ ++P AK G+ FD+ LLD R+ Subject 16398 ESTYLSKDVAKRITLALLRLPLTVDDGSVLTDKRLLLVLIIQGAVTYGTRADFVEKGPSNVCVSYKGKSVRLDFMYVRSVIIANCDSIYITNPIRKYMRWWSTATIQLIKLGIVKPNPIVAAKRGLSSNNIWLSFDYILLDARF 16829
Range 1: 8772 to 8978 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 25/69(36%) | 0/69(0%) | Plus/Plus |
Query 359 SYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD 565 +Y+EV I + N VR+F+R+ + I L+I I+P +AK+G+P++F PYCFDF++++ Subject 8772 NYAEVCTVIKKSLDNTLYPNPVRTFLRHCSDLCIDLMIRGYIKPNVKLIAKYGIPEKFYPYCFDFSMVN 8978
Range 2: 13578 to 13967 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 33/130(25%) | 0/130(0%) | Plus/Plus |
Query 176 QINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLD 565 Q++ + +L GS + + +V + Q+ V+ T N D + K+ +Y VRE+I N +R FMR + + + L I+P ++K GVP F PY D + D Subject 13578 QLSPSITKLCNEVWGSTESKYISATMVGVGQVLVMAMTSMNTKADDVEPAVINMDGKEGVFTYGRVRESITNPFSGTPMPNALRRFMRAISPSIVYWLTSGMIKPNLKLMSKWGVPPAFYPYVVDGVIPD 13967
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 15317 to 15640 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.0 bits(177) | 0.0 | 38/108(35%) | 0/108(0%) | Plus/Plus |
Query 251 IVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY 574 ++A+IQ V YSTV++ + D V + + Y++ + I + +N +R +MR+++ TTI+L+ I+P Y A HGV K + PYCFDF LD+RY Subject 15317 LLALIQCAVTYSTVQDAKLDDRAGVVIKHAGESHIFKYNDFIQVINATETPRDYSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRY 15640
Nucleotide Sequence (723 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 810 to 1523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
557.3 bits(1210) | 0.0 | 228/238(96%) | 0/238(0%) | Minus/Plus |
Query 1 VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR 714 VILRKGKLFNRALNVPI+VKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTT+GWCWFNNERLRGEIYRRRCFSSSFS+GFLM +GFRSLK +RFAGTNILH+PSLNEERTFGWK DVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR Subject 810 VILRKGKLFNRALNVPIDVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTKGWCWFNNERLRGEIYRRRCFSSSFSIGFLMHLGFRSLKVIRFAGTNILHMPSLNEERTFGWKGGDVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR 1523
Range 2: 807 to 1523 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
522.0 bits(1133) | 0.0 | 209/239(87%) | 0/239(0%) | Plus/Minus |
Query 1 PV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIASDDSGFWDIGEINICALPPKGALFIERWYV*YVRARKPDGFQRSKAHAHQETYRKGR*EATASINFSPQPFVIKPTPPSGGAYKRPFAHTPQLNARQGNITPWGRIHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSPYERVLYFNRNIKGPVKQFPFPQDDN 717 P+*GFFANHCVPLRKH+ QFRVQMGKQ RLVP YQ IGD RNDR*IDLLL+KGIGDGGQDLPSQPCPIASDDSGFWDIGEI++ ALPPKG LFIE W+V*YVRARKP+ RSKA HQETYRKGR*EAT S+NFSPQP ++KPTPP GGAYKRPFAHTPQLNARQGNITPWG IHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSP ERVLY NRNIKGPVKQFPFPQDD+ Subject 807 PM*GFFANHCVPLRKHIAQFRVQMGKQCRLVP*YQSIGDTRNDR*IDLLLIKGIGDGGQDLPSQPCPIASDDSGFWDIGEIDVSALPPKGTLFIE*WHV*YVRARKPNDL*RSKAKVHQETYRKGR*EATTSVNFSPQPLIVKPTPPFGGAYKRPFAHTPQLNARQGNITPWGCIHDEVLDRSPTPHNREEFNSSIFDVKIPSPTRGFIPDFSPNERVLYINRNIKGPVKQFPFPQDDS 1523
Range 3: 805 to 1518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
506.0 bits(1098) | 0.0 | 210/238(88%) | 0/238(0%) | Minus/Plus |
Query 6 SLSSCGKGNCLTGPLMFLLK*RTRSYGLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*IRPQGVMLPCRALSCGVCAKGRLYAPPEGGVGLITKG*GEKFIDAVASHLPFR*VS*CAWALDR*KPSGLRARTYYTYHRSMKSAPLGGRAQMFISPMSQKPLSSLAIGHGWEGRSWPPSPMPLTKRRSIHLSFRASPIGWY*GTNRPCFPIWTRNCVTCFLKGTQ*FAKNPH 719 +LSSCGKGNCLTGPLMFLL *RTRS+GLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*I+PQGVMLPCRALSCGVCAKGRLYAPP+GGVGL +G*GEKF D VASHLPFR*VS*C ALDR*+ GLRARTYYT H SMKS PLGGRA+ ISPMSQKPLSSLAIGHGWEGRSWPPSPMPL KRRSIH SFR SPI WY*GTNR CFPIWTRNC CFLKGTQ*FAKNPH Subject 805 TLSSCGKGNCLTGPLMFLLM*RTRSFGLKSGMKPLVGEGIFTSKIELLNSSLLCGVGLRSRTSS*IQPQGVMLPCRALSCGVCAKGRLYAPPKGGVGLTMRG*GEKFTDVVASHLPFR*VS*CTLALDR*RSLGLRARTYYTCHHSMKSVPLGGRAETSISPMSQKPLSSLAIGHGWEGRSWPPSPMPLIKRRSIHRSFRVSPIDWY*GTNRHCFPIWTRNCAICFLKGTQ*FAKNPH 1518
Range 4: 803 to 1522 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
484.0 bits(1050) | 0.0 | 226/240(94%) | 0/240(0%) | Plus/Minus |
Query 2 LCEGFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPATIAVFGTLGR*TSALFHPKVRSSLSDGMCSMFVPANLTAFNDLKPMRIKKPTEKEDEKQRRXXXXXXXXXXXNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILAHTNVFFTSIGTLRALLNNFPFRKMTTN 721 LCEGFSRIIASL*EN+SHNFVSKWES ADWSLNTSLLV+LETTDE*TSS LRALATEAKISPPNRVLSPATIAVFGTLGR*TS FHPKVRSSLSDGMCSMFVPANL FNDLKP IKKP EKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILA TNVFFTSIGTLRALLNNFPFRKMT + Subject 803 LCEGFSRIIASL*ENISHNFVSKWESNADWSLNTSLLVILETTDE*TSS*LRALATEAKISPPNRVLSPATIAVFGTLGR*TSPPFHPKVRSSLSDGMCSMFVPANLMTFNDLKPRCIKKPIEKEDEKQRRL*ISPLSLSLLNQHHPLVVHTNALSRILHNSMRGKATSHPGAVFTMKSSIVALPRTIGKNLTALSLT*KYPLLREASSQILAQTNVFFTSIGTLRALLNNFPFRKMTAS 1522
Range 5: 806 to 1519 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
482.6 bits(1047) | 0.0 | 210/238(88%) | 0/238(0%) | Minus/Plus |
Query 5 RCHLAEREIV*QGP*CSY*SKEHVRMG*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREYGPRV*CCLAAH*VVEYARKGVCMHHQRVVLV**RKAEGRNL*TPLLLIFLFGRFLDAHGL*IVESRQVCGHEHTTHTIAQ*RAHLWVEERRCLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*PRGGLFICRFEHHQ*AGIEGPIGLAFPFGHEIV*HVFSKGRNDSRKTLT 718 RCHLAEREIV*QGP*CSY* KEHVR+G*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREY PRV*CCLAAH*VVEYARKGVCMHHQRVVLV* +AEGRNL T LLLIFLF RFLDA L*IV+ VCGHEHTTH I Q*RA+LWVE RR LSPQCPKNRYRRWR*DTVGRGDLGLRRQCP* RGGLFI RFE+HQ* GI+GPIG+AFPFGHEIV +VFSKGRNDSRKTLT Subject 806 RCHLAEREIV*QGP*CSY*CKEHVRLG*NLG*SLS*ERVFLRQR*SC*ILPYCAG*GYDRGLHREYSPRV*CCLAAH*VVEYARKGVCMHHQRVVLV*Q*EAEGRNLQTSLLLIFLFDRFLDAPWL*IVKGH*VCGHEHTTHAITQ*RAYLWVEGRRRLSPQCPKNRYRRWR*DTVGRGDLGLRRQCP*SRGGLFIGRFEYHQ*TGIKGPIGIAFPFGHEIVRYVFSKGRNDSRKTLT 1519
Range 6: 1006 to 1518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
346.1 bits(749) | 0.0 | 146/171(85%) | 0/171(0%) | Plus/Minus |
Query 6 VRVFRESLRPFEKTCHTISCPNGKARPIGPSIPAYW*CSKRQMNRPPLG*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDKHLRSSTQRCALH*AMVCVVCSCPQT*RLSTI*SPCASRNLPKRKMRSNGVYKFLPSAFRY*TNTTLWWCIQTPFRAYSTTQCAARQHHTLG 518 VRVFRESLRPFEKT TISCPNGKA PIGP IP YW* SKR MNRPPL *GHWRRRPRSPLPTVSYRQRR*RFLGHWGD+ LR STQR ALH* M CVVCSCPQT* TI*S ASRNL KRKMRSN V KFLPSA *TNTTLWWCIQTPFRAYSTTQCAARQHHTLG Subject 1006 VRVFRESLRPFEKTYRTISCPNGKAMPIGPLIPVYW*YSKRPMNRPPLD*GHWRRRPRSPLPTVSYRQRR*RFLGHWGDRRLRPSTQRYALH*VMACVVCSCPQT**PLTI*SQGASRNLSKRKMRSNDVCKFLPSASHC*TNTTLWWCIQTPFRAYSTTQCAARQHHTLG 1518
Range 7: 805 to 966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
111.0 bits(236) | 0.0 | 52/54(96%) | 0/54(0%) | Plus/Minus |
Query 558 AQ*GRI*QLYL*RKNTLSYERLHPRF*PIRTCSLLQ*EH*GPC*TISLSAR*QR 719 AQ*GRI*QLYL*RKNTLSYERLHPRF*P RTCSL Q*EH*GPC*TISLSAR*QR Subject 805 AQ*GRI*QLYL*RKNTLSYERLHPRF*PKRTCSLHQ*EH*GPC*TISLSAR*QR 966
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 1697 to 2242 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
194.9 bits(419) | 0.0 | 87/182(48%) | 0/182(0%) | Minus/Plus |
Query 1 TIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR 546 TI +F+ P +V LP + + R R V + GWCW+N RLR + R S ++ +M MG R ++ VR A H+ S E T + V L ++AGDR R G E+LASVANALNQEEVYSSVVS I NRL L+DQS+LL+HLD +LC+MF+QRDA+IREKP+HR Subject 1697 TITEFLFGVGPDDEVQLPDMAFYCPRLRRLVHVSEGWCWYNYPRLRTRLTSRAQLCSFYTAKEVMDMGLRKVRMVRTAKVGFYHVVSKWELLTLRYPEKIVDLQTCRPVNVLAGDRVRAGNEVLASVANALNQEEVYSSVVSGIANRLALKDQSSLLAHLDNRLCEMFAQRDALIREKPNHR 2242
Range 2: 1529 to 1651 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 18/41(44%) | 0/41(0%) | Minus/Plus |
Query 592 VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYV 714 + LR + R+ ++VKNT+ W K+WDE + RRGYFY+ Subject 1529 IFLRDAVPYCRSTRSFVDVKNTYRWTKVWDEQTGRRGYFYM 1651
Range 3: 2032 to 2232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
76.7 bits(161) | 0.0 | 37/67(55%) | 0/67(0%) | Plus/Minus |
Query 11 GFSRIIASL*ENMSHNFVSKWESKADWSLNTSLLVMLETTDE*TSSWLRALATEAKISPPNRVLSPA 211 GFSRI AS * N+SHN +S+ + D S + L + ETTDE*TSSWLRA AT+A+ S P SPA Subject 2032 GFSRISASR*ANISHNLLSRCANNDD*SFSAKRLAIPETTDE*TSSWLRAFATDARTSLPALTRSPA 2232
Range 4: 2033 to 2242 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 27/70(39%) | 0/70(0%) | Plus/Minus |
Query 1 PV*GFFANHCVPLRKHVTQFRVQMGKQGRLVPQYQPIGDARNDR*IDLLLVKGIGDGGQDLPSQPCPIAS 210 PV N + L +H+T ++M +Q L+ Q Q I D R+DR ++LLLVK + G Q+L + P I+S Subject 2033 PVVRLLTNKRIALSEHLT*SVIKMCQQR*LILQCQTISDPRDDRRVNLLLVKSVCYGRQNLIASPDAISS 2242
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 1971 to 2255 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 30/95(32%) | 0/95(0%) | Minus/Plus |
Query 430 VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCW 714 ++L+ GK FN +N P+EVK T W +++D + + Y Y ++ + + ++ DFI T G V LPR + + V T GWCW Subject 1971 IVLKNGKFFNTFINQPLEVKTTNAWLRVYDIDAEKPIYVYAREGRIFKLCVEGRAPSVIDFIRATQKGHYVELPRTSFFCPATKKMVSTEVGWCW 2255
Range 2: 2463 to 2633 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 18/57(32%) | 0/57(0%) | Minus/Plus |
Query 7 LASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPS 177 +AS++ AL E+V+ +VSS+ N++ L++ SA++ LD + + + ++ KPS Subject 2463 MASISQALTSEDVFDGLVSSVANKMSLKEGSAVIRELDNSVAAILQNKANILSSKPS 2633
Grapevine leafroll-associated virus 1, complete genome
Range 1: 1922 to 2089 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Plus |
Query 13 ILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREK 180 ++ASV+NALNQE+++ +VS+I NRLVL++ S L++HLD K+ ++F ++ + +K Subject 1922 LVASVSNALNQEDLFEGIVSTIANRLVLKEGSTLVTHLDEKISELFMMKEDTLGKK 2089
Nucleotide Sequence (755 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
556.4 | 3085.6 | 37% | 1.084e-157 | 92% | NC_004667 | |
278.3 | 576.3 | 17% | 5.773e-74 | 34% | NC_022072 | |
112.4 | 275.1 | 24% | 2.427e-29 | 41% | NC_016509 | |
105.5 | 207.6 | 15% | 5.791e-22 | 31% | NC_029783 | |
79.0 | 79.0 | 11% | 5.794e-14 | 41% | NC_011702 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 13677 to 14420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
556.4 bits(1208) | 0.0 | 243/248(98%) | 0/248(0%) | Plus/Minus |
Query 5 VSSKPSHNYLGERIREDQEELHSLT*KKDSLVCLSATATHESLHVYKPP*IINKR*IFLNFSPIYRHRSXXXXXXXXEDVM*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCSINLHCHLY*YFP 748 VS+KPSHNYLGERIREDQEELH LT*KKDSLVCLSATATHESLHVYK P*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDV+*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQC INLHCHLY*YFP Subject 13677 VSNKPSHNYLGERIREDQEELHPLT*KKDSLVCLSATATHESLHVYKLP*IINKR*IFLNFSPIYRHRS*LLLLQ*LEDVV*GVIGRYRLVSKRLLSS*IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQLHQCGINLHCHLY*YFP 14420
Range 2: 13677 to 14420 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
549.5 bits(1193) | 0.0 | 244/248(98%) | 0/248(0%) | Minus/Plus |
Query 5 GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWGLIHM*TFMSRGC*KTNKTIFLSSQRMKLLLVLPDTFAQIVM*GLT*Y 748 GKVSVEVAMKINAALMELCKKVMGADDAATKT+FFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSW LIHM*TFMSRGC*KTNKTIFLSSQRMKLLL+LPDTFAQIVM*GL *Y Subject 13677 GKVSVEVAMKINAALMELCKKVMGADDAATKTEFFLYVMQIACTFFTSSSTEFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK*LRSMSINW*KI*KYLPFIDNSWELIHM*TFMSRGC*KTNKTIFLSSQRMKLLLILPDTFAQIVM*GLI*Y 14420
Range 3: 13865 to 14422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
440.9 bits(956) | 0.0 | 182/186(98%) | 0/186(0%) | Plus/Minus |
Query 3 LYQVSPHITIWANVSGRTRRSFIR*LERKIVLFVFQQPRLMKVYMCISPHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 560 LYQ+SPHITIWANVSGR RRSFIR*LERKIVLFVFQQPRLMKVYMCIS HELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHA+IASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP Subject 13865 LYQISPHITIWANVSGRIRRSFIR*LERKIVLFVFQQPRLMKVYMCISSHELSIKGKYF*IFHQFIDIDRSYFFCNSWKTLCKVLSAVTVLFLNACCLAKFHANIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 14422
Range 4: 13676 to 13825 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.9 bits(240) | 0.0 | 49/50(98%) | 0/50(0%) | Plus/Minus |
Query 600 EDDVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFP 749 EDDVKNVQAICITYKKN VLVAASSAPITFLHSSINAALIFIATSTDTFP Subject 13676 EDDVKNVQAICITYKKNSVLVAASSAPITFLHSSINAALIFIATSTDTFP 13825
Range 5: 13670 to 14422 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
525.7 bits(1141) | 0.0 | 243/251(97%) | 0/251(0%) | Minus/Plus |
Query 3 KLRESISRGGNED*CCIDGAV*EGYGRR*RSN*DKILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHXXXXXXXXXXXXXXRNTSMEFS*TAGV*KQDGNGR*HLT*RLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSANEAPPGPPGYVRPDSYVRAYLIQ 755 + RESISRGGNED*C IDGAV*EGYGRR*RSN*D+ILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRN SMEFS*TAGV*KQDGNGR*HLT RLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSA+EAPP PPGYVRPDSYVRAYLIQ Subject 13670 RARESISRGGNED*CRIDGAV*EGYGRR*RSN*DRILLVRDADCLHVLYIVFDGVQRV*LHRNR*WKEDICGVGI*LH*TSCCFDGL*KPGKAVSSVLHTNLHHGDPEW*TSDEREGYGTAWSTTEILSVHDRLRSSDVRSVQQRRNISMEFS*TAGV*KQDGNGR*HLTQRLPTIAKEVATIDVYKLVKNLEIFTFY**FMGAYTHVDFHESRLLKDKQDYLSFKSADEAPPDPPGYVRPDSYVRAYLIQ 14422
Range 6: 13798 to 14421 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
461.1 bits(1000) | 0.0 | 204/208(98%) | 0/208(0%) | Plus/Minus |
Query 4 CIK*ALT*LSGRTYPGGPGGASFADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRYVRCYRPLPSCF*TPAV*LNSMLVLRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ 627 CIK*ALT*LSGRTYPGG GGAS ADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRR VRCYRPLPSCF*TPAV*LNSML+LRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ Subject 13798 CIK*ALT*LSGRTYPGGSGGASSADLKER*SCLSFSNRDS*KSTCV*APMNYQ*KVNISKFFTNL*TSIVATSFAIVGRRCVRCYRPLPSCF*TPAV*LNSMLILRRC*TDRTSDERSLSCTERISVVLHAVP*PSRSSLVYHSGSP**RLV*STLDTALPGFHNPSKQQLV*CNHIPTPHISSFHHRFLCSQTL*TPSKTM*RTCKQ 14421
Range 7: 13711 to 13746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
30.4 bits(60) | 0.0 | 11/12(92%) | 0/12(0%) | Plus/Minus |
Query 679 P*PSYTAPSMQH 714 P*PSYTAPSM+H Subject 13711 P*PSYTAPSMRH 13746
Range 8: 13846 to 14349 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
313.1 bits(677) | 0.0 | 166/168(99%) | 0/168(0%) | Minus/Plus |
Query 76 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSXXXXXXXXXXXTICSTTTQY*HGI*LDSRRLETRR*RPITPYITSSNYCKRSSYDRCL*IGEKFRNXXXXXXXXXXXYTCRLS*VAVAERQTRLSFFQV 579 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPY TSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHG LYTCRLS*VAVAERQTRLSFFQV Subject 13846 TT*KPMMERRYMRCGYMIALNKLLLRRVMKTR*GSI*RTSHQPSSRRP*MVN***TRRLWHSMEYHRNSFRTR*TAFVRRTICSTTTQY*HGI*LDSRRLETRR*RPITPYTTSSNYCKRSSYDRCL*IGEKFRNIYLLLIIHGSLYTCRLS*VAVAERQTRLSFFQV 14349
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 14595 to 15122 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
278.3 bits(601) | 0.0 | 118/176(67%) | 0/176(0%) | Minus/Plus |
Query 221 GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQK 748 G +S EVA K+NA L LC+K++GA+D T T F L ++Q+A TF+TS S+E+KEFDY+ET DGKKIY V++ IK A STGYENPVRQYLA+FTPT +TA LNGKL NEKVMAQHGVPPKFF YT+DCVRP+Y+LFNN AILAWNLAR++AF++KT ++DNTLHNV+Q+L K Subject 14595 GMLSQEVANKVNAELKVLCQKLLGANDPQTLTNFVLLILQMAATFYTSRSSEYKEFDYLETPDGKKIYVEEVFNTIKHACVSTGYENPVRQYLAWFTPTIVTAMLNGKLTPNEKVMAQHGVPPKFFAYTLDCVRPSYNLFNNSAILAWNLARREAFKSKTASSDNTLHNVYQMLNK 15122
Range 2: 14783 to 15115 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.9 bits(275) | 0.0 | 64/111(58%) | 0/111(0%) | Plus/Minus |
Query 228 NSWKTLCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS*PVEAAACLMQSYTHTAYIFFP 560 N W TLC VLS VL LNA LAKFHA IA LLN+ G TQS V KN GGTPC AITFS SLP +AV VGV +ARY TGFS PV+ AC + T + IF P Subject 14783 NIWYTLCSVLSDDAVLDLNASLLAKFHARIALLLNKL*EGLTQSNV*AKNLGGTPC*AITFSLGVSLPLSIAVTIVGVNHARY*RTGFSYPVDTQACFIVLNTSST*IFLP 15115
Range 3: 14594 to 14737 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 21/48(44%) | 0/48(0%) | Plus/Minus |
Query 606 DVKNVQAICITYKKNFVLVAASSAPITFLHSSINAALIFIATSTDTFP 749 DV NV AIC + FV V S AP F HS+ ++A ATS + P Subject 14594 DV*NVAAICKISRTKFVRVCGSLAPNNF*HSTFSSAFTLFATSWLSMP 14737
Range 4: 14646 to 15044 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 49/133(37%) | 0/133(0%) | Plus/Minus |
Query 299 *IPC*YCVVVEQIVRRTNAVYRVRKEFRWYSMLCHNLLVHH*FTIQGRRDEGWCEVR*ILPYRVFITRRSSSLFNAIIYPHRIYLLSIIGFYVVKLFELRRRRCKERASNLHHVQEEFCLSCCVIGAHNLLTQ 697 *IPC V+E +VRR A+ V KE RWYS+L H+LLV * T++ R + + R IL V + R +S+F + + + L +I VV+LF R R ER +L + E S ++ + LLTQ Subject 14646 *IPCQNSTVIE*VVRRPYAIQCVGKELRWYSVLSHHLLVRS*LTVKHSRHDRRGKPRQILTNWVLVPCRHASVFYCVKHLFDVDLFTIRSLQVVELFVF*RPRRVERRCHLQN**NEVRQSLWIVSS**LLTQ 15044
Range 5: 16336 to 16548 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 24/71(34%) | 0/71(0%) | Minus/Plus |
Query 278 NPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFR 490 N VR Y+ Y+ T ++ L+GKL A+HGVP +F P+ D + D + A LA A R Subject 16336 NKVRTYMRYYGNTAVSLLLSGKLQPAYTAAAKHGVPKRFLPFCFDFAILDSRYYTQDVMKANALASAYAIR 16548
Grapevine leafroll-associated virus 1, complete genome
Range 1: 13700 to 14005 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
112.4 bits(239) | 0.0 | 47/102(46%) | 0/102(0%) | Minus/Plus |
Query 230 VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL 535 V + + A + +ENP+RQY F+ T + LNGKL NEKV QHGVP +F PYT D RP+Y F+NDAI AW LA + AF K+ + L N +L Subject 13700 VKGAVVKGAEGSTFENPMRQYARLFSATAVHLILNGKLRPNEKVAMQHGVPKRFLPYTFDFCRPSYSQFSNDAIRAWQLAAESAFGRKSNVTSSVLRNTSEL 14005
Range 2: 13481 to 13603 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 17/41(41%) | 0/41(0%) | Minus/Plus |
Query 626 GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQI 748 G V+ VA I+ L LC +VMG D + T FFL ++Q+ Subject 13481 GLVTPAVATAISTELKNLCAEVMGNTDQKSLTDFFLAMLQL 13603
Range 3: 13741 to 13953 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 32/71(45%) | 0/71(0%) | Plus/Minus |
Query 282 NACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS 494 NA A HA +ASLLN G +S VYG+N GTPCC TFSF + PF + V Y GFS Subject 13741 NADSAANCHALMASLLN*E*DGLQKSKVYGRNLLGTPCCIATFSFGLNFPFNIKCTAVAENNLAY*RIGFS 13953
Range 4: 15231 to 15398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 25/56(45%) | 0/56(0%) | Minus/Plus |
Query 356 IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTID 523 I+ + + YENPVRQY+ +F+ T I+ +G +V N VMA+HGV +F PY D Subject 15231 IQSSVPQSKYENPVRQYMRWFSTTTISLIKSGVVVPNYHVMARHGVTSQFIPYGFD 15398
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 13986 to 14291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 44/102(43%) | 0/102(0%) | Minus/Plus |
Query 230 VYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQL 535 +Y I+ A + YENPVRQY F+P+ I+A+ GK+ N+KV+AQHGV +F Y +D +RP+Y +N I AW LA+++AF + TLHN +L Subject 13986 LYSTIRTAVSGKNYENPVRQYWRKFSPSIISASSVGKIKPNQKVLAQHGVVKRFASYCLDVLRPSYAYYNVRQIRAWQLAQREAFSAVASSNATTLHNTSEL 14291
Range 2: 14024 to 14278 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.2 bits(112) | 0.0 | 32/85(38%) | 0/85(0%) | Plus/Minus |
Query 243 LCKVLSAVTVLFLNACCLAKFHASIASLLNRSYVGRTQSIVYGKNFGGTPCCAITFSFITSLPFRVAVMKVGVKYARYCLTGFS* 497 LCKV++ L A A A I L + +G + S Y TPCCA TF F LP +A++ +G + +YC TGFS* Subject 14024 LCKVVALELATALKASR*ANCQARICLTL*YA*LGLSTSKQYEAKRFTTPCCAKTF*FGLILPTELALIILGENFRQYCRTGFS* 14278
Range 3: 15476 to 15700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 23/75(31%) | 0/75(0%) | Minus/Plus |
Query 272 YENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNK 496 Y N +R+Y+ +++ T I+ G + N A HGV + PY D V D +A LA+ A +NK Subject 15476 YSNKLRKYMRWWSATTISLVKTGVIKPNYATQASHGVVKAYIPYCFDFVALDSRYNTKDEKIAAGLAKYVAIKNK 15700
Grapevine leafroll-associated virus 10, complete genome, genomic RNA
Range 1: 12579 to 12818 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 33/80(41%) | 0/80(0%) | Minus/Plus |
Query 284 IKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQA 523 + + A+ GYEN +RQ+ FT + +GKL +N K+ A HGVPP ++PY+ DC+ LF DA LA LA+ A Subject 12579 LDNSIAAFGYENTLRQFGRAFTAAIVQGISSGKLEVNTKICASHGVPPNYYPYSPDCLHVDARLFGYDASLAAELAKMVA 12818
Nucleotide Sequence (1342 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 3303 to 4517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
872.6 bits(1898) | 0.0 | 379/405(94%) | 0/405(0%) | Plus/Minus |
Query 117 LSRYFGLGDFWNSCWWYTLRTGLYWFPVAFVGCGLCCVVIYSSPPFLNRRITDVAFWKQPLVVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPHAAHICDTIIA*DTRSGSIAIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHSRRKPSSHD*RSTGYCARXXXXXXXXXL*T*RA*SFVTTARVPSSVSRNSAPILPRNWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFF 1331 LS Y GLGD WN W T +TGLYW PVAFV GLCCV I SS PFL RR+TD AFW+QP VHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPH AHICD IIA*DTRSGSI IVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGH RRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILP NWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFF Subject 3303 LSMYLGLGDLWNISLWRTHKTGLYWLPVAFVDRGLCCVTICSSSPFLCRRLTDDAFWEQPFAVHLNLTSRFPTRLLVKDIVDTFFHTFNKSHSVSGTRTRRITLSFRHSCRRGNLFLDISVLHASR*MGLFFTSNFPVGANPHVAHICDNIIA*DTRSGSIVIVTGNRFMLSPRWTSTFVIVKVPVIPKRLIVHIPPLYRWDVSKLRYGVVKQAPYDQRYP*RNRQ*Q*ADTLPSPNNLGNSAPIIGEASKLPSIRASPRPKQCP*TKEKH*VPWKSMCPNA*HTAAGNGV*GRKR*QR*GDLTFSYGRPSDGHRRRKPSSHD*RSTGYCARG*TA*TTGGL*T*RA*SFVTTARVPSSVSRNSAPILPCNWGRTQRRHEYPDKHLIPQYESGEVI*GNFTPKFF 4517
Range 2: 3604 to 4221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
484.9 bits(1052) | 0.0 | 203/206(99%) | 0/206(0%) | Minus/Plus |
Query 413 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTIAMDPLLVSQAMMVSQMCAAWGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR 1030 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTI MDPLLVSQAMM+SQMCA WGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR Subject 3604 NVKSP*RCYRFLPHTPFPAAVC*AFGHMLFHGT*CFSLV*GHCLGRGLARILGSLEASPIIGALFPRLFGEGRVSAHCYCLLR*GYL*S*GACLTTPYLNLLTSHR*RGGMCTMRRLGITGTLTMTKVLVHLGLSMKRFPVTITMDPLLVSQAMMLSQMCATWGLAPTGKLLVKKRPIHLEACNTLMSRKRLPRLQLWRKDKVIRR 4221
Range 3: 3304 to 3567 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
206.3 bits(444) | 0.0 | 87/88(99%) | 0/88(0%) | Minus/Plus |
Query 1067 KNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQLRGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF 1330 KNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQL GSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF Subject 3304 KNFGVKFP*MTSPLSYCGIRCLSGYSWRLWVRPQLHGSIGAELRLTLEGTRAVVTKL*AR*VHKPPVVYAV*PLAQYPVDL*SCEEGF 3567
Range 4: 4273 to 4503 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
140.4 bits(300) | 0.0 | 59/77(77%) | 0/77(0%) | Minus/Plus |
Query 131 STMSFTNSLVGKRLVRLRWTTRGCFQKATSVMRRFKKGGEL*MTTQHKPQPTKATGNQYSPVLRVYHQQLFQKSPSP 361 STMSFTNSLVGKRLVRLRWT +GC QKA+SV RR KKG EL M TQHKP+ TKATG+QYSPVL V H+ +FQ+SPSP Subject 4273 STMSFTNSLVGKRLVRLRWTAKGCSQKASSVRRRHKKGEELQMVTQHKPRSTKATGSQYSPVL*VRHRLIFQRSPSP 4503
Range 5: 3526 to 4047 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
402.9 bits(873) | 0.0 | 173/174(99%) | 0/174(0%) | Plus/Minus |
Query 587 KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSQPTKTLFARLKIHRILC 1108 KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RS PTKTLFARLKIHRILC Subject 3526 KWIHRYRHREPLHAESQMDQHLRHSQSPGNT*ASHRTHSSPLPVGRKQVEVWCR*ASPL*SKIPLA**AVTMS*HSSLAKQPREQRTNYWRSLQTSKYSR*PSPQAMSLNQRKTLSAVEEHVPKCLTYCSRKWRMR*KTIATLRGLDV*LRSP**RSPPTKTLFARLKIHRILC 4047
Range 6: 4090 to 4386 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
233.8 bits(504) | 0.0 | 93/99(94%) | 0/99(0%) | Plus/Minus |
Query 248 PLLESAHHRCRFLEATPCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP 544 P L SA HR RFL AT CRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP Subject 4090 PFLVSAPHRRRFLGATLCRPPQPHEPFPH*TVGERHRRHLFSHFQQKP*RQRYQNPTDHLVFPPQLQTGQPLPRHKCIARFEVNGSLLHQ*LPRWC*SP 4386
Range 7: 3304 to 3483 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.8 bits(290) | 0.0 | 57/60(95%) | 0/60(0%) | Plus/Minus |
Query 1151 TSLEFRNYCPRTF*R*PQFRAYTSTQLGSHPKTPRISR*APYSAIRKW*SHLRKLHPKIL 1330 TSLEFRNYCPRTF*R*PQFRAYTS QLG HPKTPRISR*APYSAIRKW*SHLRKLH KIL Subject 3304 TSLEFRNYCPRTF*R*PQFRAYTSMQLGPHPKTPRISR*APYSAIRKW*SHLRKLHSKIL 3483
Range 8: 4367 to 4504 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 29/46(63%) | 0/46(0%) | Plus/Minus |
Query 130 SDLATFGTAAGGTLSGLDCTGSLWPSSAAACAVLSSTALPPS*IGA 267 SD TFG +A G L+ LDCTGSL PS A CAVL S ALP S +GA Subject 4367 SDWVTFGISACGELTRLDCTGSLSPSLTAVCAVLPSAALPLSCVGA 4504
Range 9: 3305 to 4303 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
746.1 bits(1622) | 0.0 | 328/333(98%) | 0/333(0%) | Minus/Plus |
Query 331 RILG*SFLK*LHHFRIAE*GAYRDIRGVFGCDPNCVEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGCDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*WCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFXXXXXXXXXXCLSPTV*W 1329 RIL *SFLK*LHHFRIAE*GAYRDIRGVFGC PNC+EV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVG DRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL* CHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W Subject 3305 RILE*SFLK*LHHFRIAE*GAYRDIRGVFGCGPNCMEV*ARNCG*R*KVRGQ*LRNSKLVKFTSRRWFTRFNL*HSIRWIFSRAKRVFVGGDRH*GDRS*TSSPLSVAIVFYLIRHFRLQYVRHLGTCSSTALNVFLWFRDIAWGEG*REYLEVWRLLQ*LVRCSRGCLAREECQLIVTAYYARGIFDHKGLA*RHHTSTCLRPTGRGEECVR*DA*VLPGL*L*RRCWSIWDSA*SGSR*R*RWIHF*CLKL*CCHKCARRGD*HQRGSYW*RRDPFTSKRAIHLCRGRGCPVCSCGGKTR*SVGFWYR*RYGFC*KCEKRCRRCLSPTV*W 4303
Range 10: 4340 to 4390 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 11/17(65%) | 0/17(0%) | Minus/Plus |
Query 244 VASRKRHR*CADSRRGE 294 VA RKR R* AD+R+G+ Subject 4340 VAPRKRRR*GADTRKGK 4390
Range 11: 3573 to 4022 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
335.6 bits(726) | 0.0 | 150/150(100%) | 0/150(0%) | Minus/Plus |
Query 612 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMXXXXXXXXXGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP 1061 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP Subject 3573 AVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVP 4022
Range 12: 4077 to 4439 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
217.8 bits(469) | 0.0 | 108/121(89%) | 0/121(0%) | Minus/Plus |
Query 195 NVRGVGISTNGEVTGEEETHSPRSVQYTYXXXXXXXXXXXXERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDDKGLLPESDIGDAPIQEGGRAVDDNTAQAAADEGHR 557 NVR VGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVD KGLLPES +G+AP QE GRA D NTAQ A +EG R Subject 4077 NVRDVGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDGKGLLPESVVGEAPTQERGRAADGNTAQTAVNEGDR 4439
Range 13: 3303 to 3458 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.7 bits(255) | 0.0 | 49/52(94%) | 0/52(0%) | Minus/Plus |
Query 1176 EEFWGEVSLNDFTTFVLRNKVLIGIFVASLGATPIAWKYRRGIAANARRYAG 1331 +EFW EVSLNDFTTFVLRNKVLIGIFVASLGA PIAWKYRRGIAANARRYAG Subject 3303 KEFWSEVSLNDFTTFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAG 3458
Range 14: 3299 to 3940 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
456.1 bits(989) | 0.0 | 210/214(98%) | 0/214(0%) | Plus/Minus |
Query 694 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVSXXXXXXXXXXXXIPRLYFHAIGVAPKDATNIPISTLFRNTKVVKSFKETSPQNSSI 1335 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIG APKDATNIPISTLFRNTKVVKSFKETS QNS + Subject 3299 YTFLPSTGGT*AS*GMVSLSKPLMIKDTPSVIGSNNELTLFPRQTTSGTAHQLLEKPPNFQVFALALAPSNVPKPKKNIKCRGRACAQMPNILQPEMAYEVENDSNAKGT*RLATVALVTVTADENPLRTTKDPPDTVLEVKPRKPPAACELNELRVS*LLPAYLLALAAIPRLYFHAIGAAPKDATNIPISTLFRNTKVVKSFKETSLQNSFV 3940
Range 15: 3983 to 4159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.2 bits(221) | 0.0 | 57/59(97%) | 0/59(0%) | Plus/Minus |
Query 475 VYCTLRGEWXXXXXXXXXXXXIPTPRTFVTPS*LETLEVDPSLSSPGTASC*VPDGPAP 651 VYCTLRGEWVSSSPVTSPLVLIPT RTFVT S*LETLEVDPSLSSPGTASC*VPDGPAP Subject 3983 VYCTLRGEWVSSSPVTSPLVLIPTSRTFVTTS*LETLEVDPSLSSPGTASC*VPDGPAP 4159
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 5225 to 5398 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.5 bits(152) | 0.0 | 24/58(41%) | 0/58(0%) | Minus/Plus |
Query 666 VPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRD 839 +P +VW+G + +L+ + + +SL++R L D +PQ+ + +EGRNVYDE L+YY+D Subject 5225 MPTLVWKGLTRRQVLVQVAISMSLVLRSLFTDPVPQVQVLQTIEGRNVYDEALKYYKD 5398
Nucleotide Sequence (769 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
556.0 | 2966.0 | 40% | 1.519e-157 | 97% | NC_004667 | |
366.3 | 674.3 | 24% | 1.944e-100 | 33% | NC_022072 | |
238.0 | 329.9 | 30% | 8.135e-62 | 32% | NC_029783 | |
161.0 | 161.0 | 28% | 1.212e-38 | 38% | NC_005065 | |
108.7 | 477.1 | 19% | 2.27e-59 | 36% | NC_016509 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 6156 to 6857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
556.0 bits(1207) | 0.0 | 229/234(98%) | 0/234(0%) | Minus/Minus |
Query 67 ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNEYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFILTANDLFRVTLFRSPYGH*GQQVANI*RTPV*FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHPP 768 ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTN+YMRLFSE*GVIG LRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWF+LTANDLFRVTLFRSPYGH*GQQVANI*RTPV FRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIH P Subject 6156 ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNKYMRLFSE*GVIGFLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFVLTANDLFRVTLFRSPYGH*GQQVANI*RTPVRFRSVYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIHSP 6857
Range 2: 6159 to 6857 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
550.0 bits(1194) | 0.0 | 232/233(100%) | 0/233(0%) | Plus/Plus |
Query 70 GMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC 768 GMYKRVLVDEV+MMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC Subject 6159 GMYKRVLVDEVHMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC 6857
Range 3: 6494 to 6856 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
284.7 bits(615) | 0.0 | 121/121(100%) | 0/121(0%) | Minus/Minus |
Query 405 QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 767 QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI Subject 6494 QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 6856
Range 4: 6158 to 6442 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
219.2 bits(472) | 0.0 | 94/95(99%) | 0/95(0%) | Minus/Minus |
Query 69 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYIP 353 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIM TSSTKTLLYIP Subject 6158 FSG*HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMCTSSTKTLLYIP 6442
Range 5: 6151 to 6495 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
261.3 bits(564) | 0.0 | 111/115(97%) | 0/115(0%) | Plus/Plus |
Query 62 SLGGCIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNHTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRINQ**DRCPKGQ 406 S G CIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLN TGVR*MFATCCPQ*P*GERKSVTLKRSLAVR NQ**DRCPKGQ Subject 6151 SSGECIKGFWWMRCT*CIKAYYN*ASSQPARRKASFLET*IRYHS*TGRRCLGWIVLFLFQRRKALYTLLNRTGVR*MFATCCPQ*P*GERKSVTLKRSLAVRTNQ**DRCPKGQ 6495
Range 6: 6589 to 6858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.7 bits(484) | 0.0 | 88/90(98%) | 0/90(0%) | Plus/Plus |
Query 500 EKEKKHQ**QCMKHREKHSVMWYCLGRRRPMTPYSLNNRIYSLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVA 769 EKEKKHQ**QCMKHREKHSVMWYCLGRR+PMTPYSLNNRIY LVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVA Subject 6589 EKEKKHQ**QCMKHREKHSVMWYCLGRRKPMTPYSLNNRIYLLVCRDTHAHWFMPL*AQSWTIRSAHILATRHLNQYPTLCFTRSPRLVA 6858
Range 7: 6157 to 6534 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
267.7 bits(578) | 0.0 | 122/126(97%) | 0/126(0%) | Minus/Minus |
Query 68 RQRLFQLRHQWFQLAFWTAILLLVYPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCMI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTXXXXXXXXXXXLDASCTPHPPKPFYTSP 445 RQRLFQLRHQWFQLAFWTAILLLV PYR*RPFQGNTFPFPLRSLRTTSSKHLTDTC I*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASC PHPPKPFYT P Subject 6157 RQRLFQLRHQWFQLAFWTAILLLVCPYR*RPFQGNTFPFPLRSLRTTSSKHLTDTCTI*KCIQRFPSLEQKQHNPS*TPSPCL*MVSDLCLQKRGLPTRRLRRRLVVVSLDASCAPHPPKPFYTFP 6534
Range 8: 6619 to 6858 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
182.5 bits(392) | 0.0 | 78/80(98%) | 0/80(0%) | Minus/Minus |
Query 530 SNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQRVYAVV**IGSHRPSSS*TIPHH*MFFPVLHA 769 SNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQ+VYAVV**IGSHR SSS*TIPHH*MFFPVLHA Subject 6619 SNQPGRTCEAKRRILIEVTRR*YMCRPYRPTLSSERHKPVSVCVSTNQQVYAVV**IGSHRLSSS*TIPHH*MFFPVLHA 6858
Range 9: 6257 to 6856 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
419.9 bits(910) | 0.0 | 196/200(98%) | 0/200(0%) | Plus/Plus |
Query 168 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IIQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G*TSSKIAVQKANWNH**RS*NKR*RVLVHDPXXXXXXXXXXXXKRKRNTSDDSA*STGKNIQ*CGIV*DEEGR*LPIH*TTAYTRWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWL 767 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*I+QVSVRCLLLVVLNDRKGNGKVLP*KGR*R*G TSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEE R*LPIH*TTAYT WFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWL Subject 6257 FWRHKSDTIHKQGEGV*DGLCCFCSKEGKRCIHF*IVQVSVRCLLLVVLNDRKGNGKVLP*KGR*R*GQTSSKIAVQKANWNH**RS*NKR*RVLVHDPVGEVGYEEVVEGKRKRNTSDDSA*STGKNIQ*CGIV*DEESR*LPIH*TTAYTCWFVETHTLTGLCRSELKVGR*GRHIY*RRVTSISIRRFASHVRPGWL 6856
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 7226 to 7921 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
366.3 bits(793) | 0.0 | 150/232(65%) | 0/232(0%) | Plus/Plus |
Query 73 MYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC 768 MY R+LVDEVYMMH+GLLQ G FA+GA EG+F+GD++QIPFINREK+FR + P+K + YT ++YRCPLDVC++LS++ EKCY VVSG PVVRS KRPIG+ DVA+I ADVYLC TQ EK +MKR L G+ PVMTVHEAQGKTF VVLFRTK+ADDS+F QPH LV LSRHT SLVYAALSSKL D+VG+ I + +VS+ALLHTFAP+GC Subject 7226 MYDRILVDEVYMMHEGLLQFGCFASGAKEGIFYGDVHQIPFINREKIFRCQHSFLKPEKHLIKYTKETYRCPLDVCFMLSNLKDSKGEKCYSTGVVSGLKTPVVRSFEKRPIGSVADVAKIEADVYLCQTQAEKGEMKRELNSLGRVEPVMTVHEAQGKTFEKVVLFRTKRADDSVFNSQPHALVALSRHTSSLVYAALSSKLSDRVGSMIDSTASSTVSNALLHTFAPSGC 7921
Range 2: 7558 to 7920 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
125.7 bits(268) | 0.0 | 68/121(56%) | 0/121(0%) | Minus/Minus |
Query 405 QPAGANV*SKASDTD*GDASLIYVPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTSAFISATSSVVPI 767 QP GANV +A T I PTLS +FELRAA*T E VCL++ T G +N SSA VLN TT VFPCAS TVITG + P FN FIS FS V HKYTSA I ATS+ +PI Subject 7558 QPDGANVCRRALLTVLDAVLSIIDPTLSLSFELRAA*TREEVCLERATKA*G*ELNTLSSARLVLNKTTFSKVFPCASWTVITGSTLPRLFNSRFISPFSACV*HKYTSASIFATSATLPI 7920
Range 3: 7225 to 7497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 46/91(51%) | 0/91(0%) | Minus/Minus |
Query 72 *HFSVPLTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSSTKTLLYI 344 *HFS ++ DN TSNG Y VY F G + N FS FM GI* SP K PS AP AK P+CSKP CIM TSST+ YI Subject 7225 *HFSPFESLRFDNMKHTSNGQRYVSLVYLIKCFSGLRKLCWQRNIFSRFMKGI**TSP*KIPSLAPEAKHPNCSKPSCIM*TSSTRIRSYI 7497
Range 4: 7511 to 7921 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
65.7 bits(137) | 0.0 | 45/137(33%) | 0/137(0%) | Minus/Minus |
Query 358 ATSRGERVKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNEYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHHWCFFSFSLQRPLHIRLLQLGHAQVHVSVYFSYVISGSNWPFGQRSYYWFILTAN 768 AT R E V++ V Y R N + + QL S IN+ + +++ +RL E V+ L KQ + E FSL M CHH S ++ PLH+ LL+L QVH+S+ + S+ P + S+Y + + N Subject 7511 ATRRCECVQKGVTYCARCGAVNHRPNPVTQLRT*SSINERRSMP*KSH*SVRLRVEHTVVSALSSKQNNFLESFSLRLMDCHHRFNSSEAI*LPLHLSLLRLCLTQVHISLDLRNISHTSDRPLLK*SHYRRLQSGN 7921
Range 5: 7226 to 7417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 22/64(34%) | 0/64(0%) | Minus/Minus |
Query 73 VYNAFLLWNKNSTIHPKHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLIHQNPFIH 264 V + LL + + + ++LL VYE L+ +S + + + + L * LMHHV LI++N IH Subject 7226 VLDQVLLRFEETMLAAEYLLTVYERNLMNISVENSLFGS*SKTPKLQ*TLMHHVDLINKNTVIH 7417
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 6990 to 7646 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.0 bits(513) | 0.0 | 102/219(47%) | 0/219(0%) | Plus/Plus |
Query 88 LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALL 744 L+DEVY++H+G L + A E + +GD+NQIPF NREK+F M + P + + YT+ SYRCP DVCYLLS M + CYP V + +D+ +RS+ PI + + DV+L TQ EK+++ R + PV T+HEAQGKTF V L R KKADDS+ PH LVG+SRHTRS VY +S+L DKVG+ SD S ++VSD +L Subject 6990 LIDEVYLLHKGQLTFCLAAMRCKEAICYGDVNQIPFSNREKMFVMHYSAIKPNETEIEYTNISYRCPADVCYLLSKMVNLDGKPCYPNGVQAFEDRRPLRSMRVIPINGPSEAIREDVDVFLTYTQAEKAELIRERISASRNVPVYTIHEAQGKTFDRVALVRLKKADDSVIKGLPHALVGISRHTRSFVYMTYNSRLSDKVGSLCSDVSDKNVSDVVL 7646
Range 2: 7343 to 7600 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
60.2 bits(125) | 0.0 | 38/86(44%) | 0/86(0%) | Minus/Minus |
Query 441 VPTLSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSFPFPFNDLFISDFSNWVMHKYTS 698 +PTLS EL T +RVCL+ PT G ESSAFF T NVFP AS V TG L S FS V K TS Subject 7343 LPTLSERRELYVIYTKDRVCLEIPTKAWGNPFMTESSAFFKRTRATRSNVFP*AS*MV*TGTFLDAEILSLINSAFSACVYVKKTS 7600
Range 1: 4764 to 5399 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 80/212(38%) | 0/212(0%) | Plus/Plus |
Query 70 GMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYI 705 G V +DE +++H G L++ GA E +GD QIPFINR + F V K V+ + SYRCP DVC +LS + CYP V G RS+S + I + DV N DV++ TQ EK + + + + TVHE QGKT V + R K A+DS+FT H +V LSRHT Y ++S +L D +G I Subject 4764 GKCDTVCIDECFLVHAGELKICAVLAGADEVYLYGDSQQIPFINRLQSFACKNGVVKTDKFKVIKRNVSYRCPSDVCVMLSEKRDKRGNLCYPAGVKKGNSSRPDRSVSYKAISSITDVDMENGDVFVTFTQDEKHAVSNEARARKLKVSSNTVHEIQGKTVPFVKIIRLKAAEDSVFTMTGHEIVALSRHTVGARYYSISKRLFDGIGREI 5399
Grapevine leafroll-associated virus 1, complete genome
Range 1: 7076 to 7357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
108.7 bits(231) | 0.0 | 46/94(49%) | 0/94(0%) | Plus/Plus |
Query 463 QLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALL 744 ++++ K + K V+T HEAQGKT+ DVVL R KKADD +F+++PHI+V LSRHTRS+ YA LSSK+ D + I VSD LL Subject 7076 EMQRVVAKMEIAAGKKRPDVLTTHEAQGKTYGDVVLVRLKKADDPIFSRKPHIVVALSRHTRSMKYAVLSSKMSDTISKLIDGTYAGKVSDVLL 7357
Range 2: 6845 to 7087 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 41/81(51%) | 0/81(0%) | Plus/Plus |
Query 247 KESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKR 489 +E + YT SYRCP DVCY+LSSMT K YP V D +RS K PI T +D ADVYL MTQ EK++M+R Subject 6845 EELIEYTDISYRCPADVCYVLSSMTDMRGAKLYPNGVFPNGDTRPLRSFEKVPIATPEDALLYEADVYLTMTQNEKAEMQR 7087
Range 3: 6686 to 6814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.3 bits(145) | 0.0 | 27/43(63%) | 0/43(0%) | Plus/Plus |
Query 88 LVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVF 216 L+DEVYM+H+G+ QL V A G E + +GD NQIPFINREK F Subject 6686 LIDEVYMLHKGMFQLTVVAMGVKEVIAYGDKNQIPFINREKTF 6814
Range 4: 6691 to 6924 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 35/78(45%) | 0/78(0%) | Minus/Minus |
Query 93 LTVIEDNK*QTSNGHLYDLEVYTTLSFFGTKTAQSILNTFSLFMNGI*FMSPKKRPSDAPVAKTPSCSKP*CIMYTSS 326 ++VI+DN * TS GHLY++ VY+ S + + + N FSL +NGI*F+SP S P+A T + + P C +YTSS Subject 6691 ISVIDDNT*HTSAGHLYEMSVYSISSSANSTASLGVTNVFSLLINGI*FLSPYAITSFTPIATTVN*NIPLCSIYTSS 6924
Range 5: 7120 to 7302 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 32/61(52%) | 0/61(0%) | Minus/Minus |
Query 507 LSSNFELRAA*TSERVCLDKPTSICGCLVNRESSAFFVLNNTTSLNVFPCASCTVITGVSF 689 +S EL A RVCLDK T+I G SSAFF L NTTS V PCASC V T F Subject 7120 VSDILELSTAYFMLRVCLDKATTI*GFREKIGSSAFFNLTNTTSPYVLPCASCVVNTSGLF 7302
Range 6: 6692 to 6814 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.7 bits(76) | 0.0 | 17/41(41%) | 0/41(0%) | Minus/Minus |
Query 94 KHLLPVYEWYLIYVSKKEAFRRAGCEDA*L**ALMHHVHLI 216 K L PV +WYLI +S ++ F + *L +LM H+H I Subject 6692 KRLFPVDKWYLILISVRDNFFHSHRYHC*LKHSLMQHIHFI 6814
Range 7: 7133 to 7360 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
34.1 bits(68) | 0.0 | 27/76(36%) | 0/76(0%) | Minus/Minus |
Query 520 VKQSVGY*LR*RVANICADLIVQL*AQSGINQ*ACVSRQTNEYMRLFSE*GVIGLLRPKQYHITECFSLCFMHCHH 747 ++Q+V + R N D I L AQ + A + Q+N MRL E +I LL+ QY+IT +L FM H Subject 7133 LQQNVTHFSSVRTINQLRDSIRHLRAQHRVFHAASMP*QSNYNMRLPREDRIICLLQSYQYNITIRLALRFMRR*H 7360
Nucleotide Sequence (2539 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
1439.8 | 9812.3 | 38% | 0 | 79% | NC_004667 | |
544.5 | 1264.5 | 28% | 0 | 32% | NC_022072 | |
225.6 | 677.1 | 24% | 5.114e-119 | 33% | NC_016509 | |
120.2 | 425.8 | 17% | 2.101e-60 | 24% | NC_009992 | |
178.9 | 656.3 | 18% | 4.776e-99 | 38% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 10017 to 11966 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1439.8 bits(3136) | 0.0 | 642/650(99%) | 0/650(0%) | Minus/Plus |
Query 21 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDXXXXXXXXXXXXGPDTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWAGRALLFESW**VHRCLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYH 1970 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRW GVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCD LAGNSGLRLVDTLTNTLTDEVV QPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTR+NL NKDKGFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYW GRALLFESW**VHR LGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYH Subject 10017 PRLQQSSTINTGLRTV*FLL*LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWAGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDTLAGNSGLRLVDTLTNTLTDEVVGLQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRRNLGNKDKGFSDLRIEENFLKSAVDTDTILNG*IYLCNGDIKP*RG*RRGILGSE*GIYWTGRALLFESW**VHRRLGKLCCED*WIYVDFAIYDRCFRVFLVERRIDYH 11966
Range 2: 10537 to 11880 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
990.3 bits(2155) | 0.0 | 438/448(98%) | 0/448(0%) | Plus/Minus |
Query 107 SRVFPDNGVLTTTIRKGAPSRPNISLIHYREYLVSSLVRV*YPRYINIFIHSKSYLYLRRILKNFLLSLNPRTPYLCYSGFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIHFLLPHH*R*QTPSRPWRD*TAPRRSLLGLPYVSIRPGTSVHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAENPLPRPLAYSLKCPPVSVRYYLPKYRSXXXXXXXXNI*NRYCRTRP*ISAAN*PHHS*P*LEHLTPQS*QQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*R 1450 SRVFPD+GVLTTTIRKGAPSR NISLIHYREYLVSSLVRV*YPRYINIFIHSKS LYLRRILKNFLLSLNPRTPYLCY GFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIH LLPHH*R*QTP RPWRD*TAPRRSLLGLPYVSIRPGTS HLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAE+PLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTR *ISAAN*PHHS*P*LEHLTPQS*+Q*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*R Subject 10537 SRVFPDDGVLTTTIRKGAPSRSNISLIHYREYLVSSLVRV*YPRYINIFIHSKSCLYLRRILKNFLLSLNPRTPYLCYPGFSS*KPYRAKYSVWSSTLVLP*PLNLLSQIYRPMNPVRLLSRVPDIHSLLPHH*R*QTPFRPWRD*TAPRRSLLGLPYVSIRPGTSAHLEKLCYSPLQIYRIPHLHHPLCIYEYMNRVLDYLSGKLPPAEDPLPRPLAYSLKCPPVSVRYYLPKYRSKP*PHKPPNI*NRYCRTRL*ISAAN*PHHS*P*LEHLTPQS*RQ*PGLGKSCQDQF*ILPQP*R*MVQRLRPVRR*SNPQPPHPLLRG*GVAL*RYC*TSLPSSRIRISLTWHQTPFL*SFV**LPR*LYQYLYHPRNYHPLKR*RIVYFPSS*RMRRRKSLPQNQKPLIIGLLLAT*LRNRGLRPSVR*QHL*PVYQDLLAPQQRSFV*R 11880
Range 3: 9774 to 11033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
932.1 bits(2028) | 0.0 | 411/420(98%) | 0/420(0%) | Plus/Minus |
Query 954 RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVXXXXXXXXXXXXXXIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDKRKNQQQNYHKDKIDY*QQYCLFKIVHKQIRLLQYKITILPSLSTKIIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV 2213 RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDV FDVIPRHT PPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKA+C E GSKIYTYFHI*LKEESHCPKTCINGGALL*PRDD+RKNQQQNYH+DKIDY*QQYCLFKI+HKQIRLLQYKITILPSLSTK+IRVAPSPISLLRRTRSIPISRKNLFMSPLNLV Subject 9774 RVWVKVVKTSFEYFHSPSAEWCNDCVQFVASQIHNLHTPFYGDKVLRYSVIVRQVFLHRGYEYP*LGIRRLSFDLLFDNFHDSSINISTTQEIITH*KDDA*YISLLLNE*DVESPSPKIKNR***VFYSRLS*GIEGCGRRFVNNTSNRYTKTF*RLNNEASFKGVIVSRYRYNSCCNRRRRIPFALQYQGSQE*TYYVNDPQ*GVWSGT*TSN**GASAVYLHGVCRF*FLDVAFDVIPRHTCPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKADCAESGSKIYTYFHI*LKEESHCPKTCINGGALL*PRDDERKNQQQNYHEDKIDY*QQYCLFKIIHKQIRLLQYKITILPSLSTKVIRVAPSPISLLRRTRSIPISRKNLFMSPLNLV 11033
Range 4: 11073 to 11936 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
668.7 bits(1453) | 0.0 | 280/288(97%) | 0/288(0%) | Plus/Minus |
Query 51 YAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRICIYGGF*KIFFYP*IREPLIFVTQVFPRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFIFYFLTINDNRHRPVRGEIKLRHVGLYWVSPTFRYAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRYLRQISHITPDL 914 YAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNR+CIYGGF*KIFFYP*IREPLIFVTQV PRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFI YFLTINDNRHR VRGEIKLRHVGLYWVSPTFRYAPERR I*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLK HYLVR*RIR*SVHQSQSAITCQ+IAVNLSPTSHRTSKIGTVEHD RYLRQISHITPDL Subject 11073 YAKASIVDCEVDVNPLILAAEFSQTTVYLLPRFEKERPPGPIYPLFTTENTSSLASLGFNIPVT*IYLSIQNRVCIYGGF*KIFFYP*IREPLIFVTQVSPRESLIVQNIQCGQVLWYCLSL*IFSPRFIDQ*IQYVCCPGYQIFILYFLTINDNRHRSVRGEIKLRHVGLYWVSPTFRYAPERRLI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKTHYLVR*RIR*SVHQSQSAITCQSIAVNLSPTSHRTSKIGTVEHDFRYLRQISHITPDL 11936
Range 5: 11077 to 11976 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
665.0 bits(1445) | 0.0 | 289/300(96%) | 0/300(0%) | Minus/Plus |
Query 11 SGVMWLICRRYLRSCSTVPILDVRWLVGLRFTAIFWQVIAD*DWWTLXXXXXXXR*WIFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MNRRSGAYRNVGETQ*RPTWRSLISPRTGRCLLSLMVRK*KMNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRGKT*VTKIRGSRI*G*KKIF*NPP*IQIRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTYPN 910 SGVMWLICRRYL+SCSTVPILDVRWLVGLRFTAI WQVIAD*DWWTL*RIR*RTR*W+FSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*M+RRSGAYRNVGETQ*RPTWRSLISPRT RCLLSLMVRK*+MNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRG+T VTKIRGSRI*G*KKIF*NPP*IQ RF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTT N Subject 11077 SGVMWLICRRYLKSCSTVPILDVRWLVGLRFTAILWQVIAD*DWWTL*RIR*RTR*WVFSRW*FSRKVVQYPVHILIDTQWVVEMWYTVYLKGRITELF*MSRRSGAYRNVGETQ*RPTWRSLISPRTERCLLSLMVRK*RMNIWYPGQQTYWIHWSINLGEKI*RLRQYQST*PH*IFCTIRLSRGETWVTKIRGSRI*G*KKIF*NPP*IQTRF*MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTTLSN 11976
Range 6: 10001 to 10909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
629.3 bits(1367) | 0.0 | 302/303(100%) | 0/303(0%) | Plus/Minus |
Query 1078 GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVSGXXXXXXXXXXXXLSIFTVYVGFNFST*RSTLSLVTPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR 1986 GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTP HLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR Subject 10001 GIRCCVIALLLDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGTVTTAAVTVVDVYLSHSSIKALKNKHITSTTLNKVSGPEPKPPINKAPPLSIFTVYVGFNFST*RSTLSLVTPAHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSISN*RRNHTVLRPVLMVELCCNLGTTNVR 10909
Range 7: 9674 to 10366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
507.8 bits(1102) | 0.0 | 222/231(96%) | 0/231(0%) | Minus/Plus |
Query 1621 *VYFLSLVLSYMTLRQNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*SSC*AKVVS*FYIEVGVFVYGRF*TGNTVASSRFCLCDNSVAGSYVCRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHLQYNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED 2313 *VY LSLVLSYMTLR NYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE* SC*AKVVS*FYIEVGVFVYG F*TGNTVASSRFCL DNS AGSYV RPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNH Q+NLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED Subject 9674 *VYLLSLVLSYMTLRPNYEFSFV*ASLSAFIGARRGLVAT*IGFCARLG*NEFALKEKSGKAPRE*PSC*AKVVS*FYIEVGVFVYG*F*TGNTVASSRFCLRDNSAAGSYVRRPEVTAKLHH*YRS*DSVIPPLVRYGSRYRFWNHFQHNLLFPIWGQRLYSCGR*CLR*NPNFYT*R*QYLLNW*SCGESLS*RCRGKVVC*PEKVGRCDEG*RRTLRREIKTYIHRED 10366
Range 8: 10415 to 10909 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
378.6 bits(820) | 0.0 | 165/165(100%) | 0/165(0%) | Minus/Plus |
Query 1078 HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP 1572 HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP Subject 10415 HLIEGR*RNMFILESLDTGVRKVYVYDGYSSCCNGTG*L*LL*TKLRC*GAKRSWYTG*RCC*RTDGRSPLFLS*VASRRPIISGF*FWGRDFRRLIR*EEGKYTMRHLFSG**FLGW*RY**SYRGSYQTKDQRKGV*CQVRDIRILDEGRLV*Q*RYNATPYP 10909
Range 9: 11264 to 11755 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
374.5 bits(811) | 0.0 | 162/164(99%) | 0/164(0%) | Plus/Minus |
Query 232 SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLSLLLRFFLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI 723 SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLSLL RF LVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI Subject 11264 SPLHKYIYPFKIVSVSTADFKKFSSILKSENPLSLLPRFLLVKALSCKIFSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSVSTGSPLRFDTPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFGKI 11755
Range 10: 11192 to 11671 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
361.7 bits(783) | 0.0 | 155/160(97%) | 0/160(0%) | Minus/Plus |
Query 316 *RTETGGHFNEYANGRGSGFSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*TDVPGRIET*GRPSRDRRGAV*SLHGRDGVCYR*W*GSKK*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKPE*QR*GVLG 795 *RTETGGHFNEYANGRGSG SAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK* DVPGRIET*GRPSRDRRGAV*SLHGR+GVCYR*W*GSK+*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKP *QR*GVLG Subject 11192 *RTETGGHFNEYANGRGSGSSAGGNFPER*SNTLFIYS*IHSGWWRCGIRYI*RGE*QSFSK*ADVPGRIET*GRPSRDRRGAV*SLHGRNGVCYR*W*GSKE*ISGTRDNKRTGFIGL*IWERRFRG*GNTRVLDHTEYFAR*GFHEEKPG*QR*GVLG 11671
Range 11: 9709 to 10197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
353.9 bits(766) | 0.0 | 156/163(96%) | 0/163(0%) | Minus/Plus |
Query 1790 DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMIFVLSEGSIVILY*SRRICLWTILNRQYCC**SILSL**FCCWFLRLSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPPSVQFAFPHLGSAVVLLWPVVFTLKPKF 2278 DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRM FVLSEGSIVILY*SRRICLW ILNRQYCC**SILS **FCCWFLR SSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEP S Q AFPHLGSAVVLLWPVVFTLKPKF Subject 9709 DATSKL*IFLRVGVVECVHRR*TRFSGDINRFLREIGIERVRLKREIGEGATRMTFVLSEGSIVILY*SRRICLWMILNRQYCC**SILSS**FCCWFLRSSSRGYSKAPPLIQVLGQCDSSFS*IWK*V*ILEPLSAQSAFPHLGSAVVLLWPVVFTLKPKF 10197
Range 12: 10603 to 11004 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
314.5 bits(680) | 0.0 | 134/134(100%) | 0/134(0%) | Minus/Plus |
Query 983 TNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK 1384 TNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK Subject 10603 TNRRPQPSIP*LSRE*KTYY*RFLILGEGLSTSHSLRRREIYYASSFQWVIISWVVEILIELSWKLSNKRSKERRLMPS*GYSYPR*RKTCLTITL*RNTLSP*KGVWRLWI*LATNWTQSLHHSALGLWKYSK 11004
Range 13: 9949 to 10353 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
306.2 bits(662) | 0.0 | 128/135(95%) | 0/135(0%) | Plus/Minus |
Query 1634 M*VLISRRNVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSKLY*RWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRQT*EPATELSQRQNRLLATVL 2038 M*VLISRR+VRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKS+L *+WFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGR+T*EPA ELS+RQNRLLATVL Subject 9949 M*VLISRRSVRRYPSSHLPTFSG*HTTFPLHRHDKLSPQLYQLSKYCYLQV*KFGFQRKHYRPQEYNR*PQMGKSRLC*KWFQNLYLLPYLTKGGITLS*DLY*WWSFAVTSGRRT*EPAAELSRRQNRLLATVL 10353
Range 14: 9659 to 9949 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
223.3 bits(481) | 0.0 | 96/97(99%) | 0/97(0%) | Plus/Minus |
Query 2038 ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIILT*RHIRQH*GKKINLNRRKE 2328 ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFII T*RHIRQH*GKKINLNRRKE Subject 9659 ACLKSSINKYAYFNIKSRYYLRSARRSFAWRLPRFLF*GELVLSQSRAKTYLCRH*TSSSADERTQRRLHEGKFIIWT*RHIRQH*GKKINLNRRKE 9949
Range 15: 9714 to 9950 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
183.4 bits(394) | 0.0 | 78/79(99%) | 0/79(0%) | Minus/Plus |
Query 2037 YVKIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA 2273 YV+IMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA Subject 9714 YVQIMNFPSCRRR*VRSSALDEV*WRHK*VFARDWDRTSSP*KRNRGRRHANDLRAERR*YRDFILK*AYLFMDDFKQA 9950
Range 16: 10240 to 10485 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
174.3 bits(374) | 0.0 | 80/82(98%) | 0/82(0%) | Minus/Plus |
Query 1502 RGKLIVTV*REGCMLTRKGG*V*RGITSNVTSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI 1747 RGKLIVTV*REGCMLTRKGG V*RGITSN TSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI Subject 10240 RGKLIVTV*REGCMLTRKGGQV*RGITSNATSRN*NLHTP*R*TAEAPY*LEV*VPDQTPY*GSLT*YVYS*EP*YWSAKGI 10485
Range 17: 9697 to 9900 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 66/68(97%) | 0/68(0%) | Plus/Minus |
Query 2087 HDTTFAQHEDHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F*RSVIYDN 2290 HDTTFAQHE HSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*F RSVIYDN Subject 9697 HDTTFAQHEGHSRGAFPDFSFKANSFYPNLAQKPIYVATKPRLAPMNALNDAYTKENS*FGRSVIYDN 9900
Range 18: 10958 to 11197 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.2 bits(315) | 0.0 | 79/80(99%) | 0/80(0%) | Plus/Minus |
Query 790 PLLPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGATIA 1029 PLLPAK+SQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA Subject 10958 PLLPAKVSQ*TLAPQATEHLKSVLSNTTLDICGKLATSLLTLTRALDPPVITAITGSG*KLSRPVLNTSTALALNGATIA 11197
Range 19: 10961 to 11131 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 55/57(96%) | 0/57(0%) | Minus/Plus |
Query 856 NRCTIQR*GCGSIQNWS*QLLPRPGYCCYDWGVKCSS*GQE*CG*FAADI*GRVRQY 1026 NRCTIQR*GCGSIQNWS*QLLPRPGYC YDWGVKCSS*GQE*CG*FAADI* RVRQY Subject 10961 NRCTIQR*GCGSIQNWS*QLLPRPGYCRYDWGVKCSS*GQE*CG*FAADI*SRVRQY 11131
Range 20: 11798 to 11965 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.5 bits(272) | 0.0 | 54/56(96%) | 0/56(0%) | Plus/Minus |
Query 22 W*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRQRCTYYHDSKRSALPAQYIPYS 189 W*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPR+RCTYYHDSKRSALP QYIPYS Subject 11798 W*SIRLSTRNTRKHLS*IAKST*IH*SSQQSFPRRRCTYYHDSKRSALPVQYIPYS 11965
Range 21: 11726 to 11875 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
106.9 bits(227) | 0.0 | 48/50(96%) | 0/50(0%) | Minus/Plus |
Query 112 EWINIFM*RGY*TLTRLETRYSR**IRDILGREGAPFRIVVVSTPLSGKT 261 EWINIFM*RGY*TLTRLETRYSR**IRDIL REGAPFRIVVVSTP SGKT Subject 11726 EWINIFM*RGY*TLTRLETRYSR**IRDILDREGAPFRIVVVSTPSSGKT 11875
Range 22: 9508 to 9630 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.6 bits(198) | 0.0 | 40/41(98%) | 0/41(0%) | Plus/Minus |
Query 2357 QRNLH*RLHTKRKNLWRSAKVTYVIMYI*TNKQ*KIKEYTK 2479 QRNLH*RLHTKRKNLWRSAKVTYVIMYI*TNKQ*KIKEY K Subject 9508 QRNLH*RLHTKRKNLWRSAKVTYVIMYI*TNKQ*KIKEYLK 9630
Range 23: 9505 to 9627 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
92.7 bits(196) | 0.0 | 38/41(93%) | 0/41(0%) | Minus/Plus |
Query 2360 AFCIFFYFLLFVSLDVHYYVGYFGATPKVFPLCV*PLM*VS 2482 +F IFFYFLLFVSLDVHYYVGYFGATP+VFPLCV*PLM*VS Subject 9505 SF*IFFYFLLFVSLDVHYYVGYFGATPEVFPLCV*PLM*VS 9627
Range 24: 9506 to 9610 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
78.0 bits(164) | 0.0 | 34/35(97%) | 0/35(0%) | Minus/Plus |
Query 2377 LFVYSFIFYCLLV*MYIIT*VTLALRQRFFLFVCS 2481 LF YSFIFYCLLV*MYIIT*VTLALRQRFFLFVCS Subject 9506 LFRYSFIFYCLLV*MYIIT*VTLALRQRFFLFVCS 9610
Range 25: 9506 to 9604 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
73.9 bits(155) | 0.0 | 32/33(97%) | 0/33(0%) | Plus/Minus |
Query 2383 HKEEKPLA*RQSNLRNNVHLN*QTIKNKRIYKK 2481 HKEEKPLA*RQSNLRNNVHLN*QTIKNKRI KK Subject 9506 HKEEKPLA*RQSNLRNNVHLN*QTIKNKRISKK 9604
Range 26: 9537 to 9626 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 29/30(97%) | 0/30(0%) | Plus/Minus |
Query 2361 ETYIKGYTQRGKTFGVAPK*PT**CTSKLT 2450 ETYIKGYTQRGKT GVAPK*PT**CTSKLT Subject 9537 ETYIKGYTQRGKTSGVAPK*PT**CTSKLT 9626
Range 27: 10414 to 10488 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 25/25(100%) | 0/25(0%) | Plus/Minus |
Query 1499 TYTFRTPVSRLSRINILRQRPSIRC 1573 TYTFRTPVSRLSRINILRQRPSIRC Subject 10414 TYTFRTPVSRLSRINILRQRPSIRC 10488
Range 28: 9507 to 9623 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.9 bits(120) | 0.0 | 37/39(95%) | 0/39(0%) | Minus/Plus |
Query 2364 FLYILLFFIVC*FXXXXXXXXXXRYAKGFSSLCVAFNVG 2480 FL ILLFFIVC*FRCTLLRRLLWRYA+GFSSLCVAFNVG Subject 9507 FLDILLFFIVC*FRCTLLRRLLWRYARGFSSLCVAFNVG 9623
Range 29: 9693 to 9734 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
33.6 bits(67) | 0.0 | 13/14(93%) | 0/14(0%) | Plus/Minus |
Query 2253 KIHNFDVASYTTTL 2294 KIHN DVASYTTTL Subject 9693 KIHNLDVASYTTTL 9734
Range 30: 11935 to 11964 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
24.9 bits(48) | 0.0 | 10/10(100%) | 0/10(0%) | Plus/Minus |
Query 23 GSQSAFQQEI 52 GSQSAFQQEI Subject 11935 GSQSAFQQEI 11964
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 11381 to 12652 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
544.5 bits(1182) | 0.0 | 234/424(55%) | 0/424(0%) | Minus/Plus |
Query 303 DTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIE 1574 D L V D+ICLFLR LI E E T TVT+AVVTVPADYNSFKR F+V AL+GLGIPV+ ++NEPTAAALYSLAKS ++D+L+AVFDFGGGTFDVSFVKKKG+IL V++S GDNFLGGRDID A+ +K+K+ G KL FVS++KED+SN+ ++ H++P G E+V LT EL +VAPF+ +AV++F ++ F PD +AV+TGGSSALV+VR +A LP ++ VV+D DFRCSVACGAKVYCD L G LRLVDTLTN+L+DEVV+F+P ++FPKG+PIPCSYT Y+V +VVYG++EGE NR++LNE TFR + TD +++LS DGT+SV +NG+ NE+ +NV+ S Y +GRED + + + EY LN + + ++ K F+DL I+ Subject 11381 DIKLSVTDIICLFLRGLIKEAESETGKTVTSAVVTVPADYNSFKRGFIVTALRGLGIPVKAIINEPTAAALYSLAKSGLDDMLIAVFDFGGGTFDVSFVKKKGDILVVVYSAGDNFLGGRDIDLALANTLKKKLSGDVDMGKLLFFVSTIKEDMSNDPSVETHIVPTIKGSEIVRLTEAELTEVVAPFAKKAVKIFSDAMERFLPDRAVAVLTGGSSALVEVRKQIAALPSVASVVYDPVDFRCSVACGAKVYCDCLGGKGSLRLVDTLTNSLSDEVVEFEPSLVFPKGNPIPCSYTTSYSVSTANVVYGVYEGEKNRSYLNELTFRCEYRHGSSGKRTDTVKYDLSLDGTLSVTINGKLGVNEFNTTLPSNVVKSKSYSTGREDTQKEGVGEYCALLNAIRSTSVVPDDVLLGRKVFTDLNID 12652
Range 2: 11048 to 11335 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
162.4 bits(348) | 0.0 | 61/96(64%) | 0/96(0%) | Minus/Plus |
Query 1620 LDMEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 1907 + M+VGIDFGTTFST+C+S SG GCT VAGS++VETQ+F+PE + Y IGK AGK YRDGV GRLY+NPKRWVGV N +++KLKP Y+V++ Subject 11048 IPMDVGIDFGTTFSTLCYSASGAGGCTRVAGSIFVETQVFVPEEGTRYYIGKVAGKLYRDGVVGRLYLNPKRWVGVNAINFSSFMKKLKPAYSVEL 11335
Range 3: 12683 to 12922 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 26/80(32%) | 0/80(0%) | Minus/Plus |
Query 20 MDKYIYVTGILNPNEARDEVFSVVNKGYIGPGGRSFSNRGSKYTVVWENSAARISGFTSTSQSTIDAFAYFLLKGGLTTT 259 MDK Y TG+ +EA E VV + + RGS T+V + S + S + A AYF L GG ++T Subject 12683 MDKVCYATGLTAVSEAYAEYERVVGENLLEYSTFRIPVRGSTLTLVKSGNEILASYPSEGSTAERKAVAYFTLVGGFSST 12922
Range 4: 11380 to 11847 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
151.8 bits(325) | 0.0 | 92/156(59%) | 0/156(0%) | Plus/Minus |
Query 1108 LDKSSFIEDTNIPNLASDAFPLIFCLITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTLNKVS 1575 LD SS I DT +L P F L A SISLPPKKLSP E T I PFFLT +TSKVPPPKSKTA N SS+ DLA E +AAAVGS LTGIPRP A T K L EL*SAGTVTTA VTV V LS S I +N+HI S T + +S Subject 11380 LDISSLIVDTKNNSLPMSTSPDSFFLRVLAKAKSISLPPKKLSPAE*TTTRISPFFLTKDTSKVPPPKSKTAINISSSPDLASEYKAAAVGSFMMALTGIPRPRRAVTMKPLLNEL*SAGTVTTAEVTVFPVSLSASLINPRRNRHIISVTDSLIS 11847
Range 5: 11053 to 11274 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 45/74(61%) | 0/74(0%) | Plus/Minus |
Query 1681 TPTHLFGLTYNLPSTPSR*AFPAALPIK*VLLPSGIKIWVST*TLPATGVQPLTPDGEKQIVLKVVPKSIPTSI 1902 TPTH G YNLP+TPSR FPA LPI ++ SG VST LPAT VQP PD E VL VVPKS+PTSI Subject 11053 TPTHRLGFRYNLPTTPSRYNFPATLPI*YLVPSSGTNTCVSTKMLPATLVQPPAPDAE*HRVLNVVPKSMPTSI 11274
Range 6: 11932 to 12159 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.3 bits(121) | 0.0 | 41/76(54%) | 0/76(0%) | Plus/Minus |
Query 796 LPAKISQ*TLAPQATEHLKSVLSNTTLDICGKXXXXXXXXXXXXDPPVITAITGSG*KLSRPVLNTSTALALNGAT 1023 LP K SQ T AP ATEHLKS S TTL G A LT T+AL+PPV TA SG LS TA NGAT Subject 11932 LPPKQSQYTFAPHATEHLKSTGSYTTLATLGSAAICFLTSTKALEPPVKTATALSGRNLSIASEKIFTAFLANGAT 12159
Range 7: 12235 to 12270 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.1 bits(55) | 0.0 | 10/12(83%) | 0/12(0%) | Plus/Minus |
Query 685 VYEQGIGLPFGK 720 VYEQGIG P GK Subject 12235 VYEQGIGFPLGK 12270
Range 8: 12298 to 12357 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.6 bits(54) | 0.0 | 12/20(60%) | 0/20(0%) | Plus/Minus |
Query 598 NVGSFRKALLFSPSNIPYTT 657 NV S R FSPS PYTT Subject 12298 NVSSLR*LRFFSPSYTPYTT 12357
Range 9: 12394 to 12576 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 20/61(33%) | 0/61(0%) | Plus/Minus |
Query 379 FSVVKYSGIALASKSSLPDL*TNESSTFVVPGTRYSFFTSSPLTITDTVPSVERLNCATSV 561 F+ +YS SSLP * + +TF S S PL +T +VPS ++ SV Subject 12394 FNNAQYSPTPSFCVSSLPVE*DFDFTTFEGRVVLNSLTPSLPLIVTLSVPSSDKSYLTVSV 12576
Range 10: 11054 to 11332 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 36/93(39%) | 0/93(0%) | Plus/Minus |
Query 1623 LHGVCRF*FLDVTFDVIPRHTYPPFRVNIQPSLYTVTISFPRSFTN*VSTATFRYKNLGFNVNTTGHRSTTADPRWGKANCTEGGSKIYTYFH 1901 LH VC F T V + PPFR+ +Q ++ I FP +FT VS+A FR K L F + T H TT+ R A T+ GS++Y + H Subject 11054 LHAVCWFQLFHETAKVYRVYADPPFRI*VQSPYDSIPIQFPGNFTYIVSSAFFRDKYLRFYKDATCHPGTTSCTRRRIA*STKCGSEVYAHVH 11332
Range 11: 12074 to 12367 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 31/98(32%) | 0/98(0%) | Plus/Minus |
Query 588 YAPERRFI*KSSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSKIGTVEHDLRY 881 + PER F+ +++ L F ++++ I TH V + YW +N RL++++LV I ++QS+ +T IAV T + TSK+ V H Y Subject 12074 FTPER*FVEVTTIFLSFVHSIHDIGGTH*VGRGVRARYWIPLGKNQRRLELNHLVTQAISERIYQSKRPLTS*AIAVYFCSTRNGTSKVNWVVHYASY 12367
Grapevine leafroll-associated virus 1, complete genome
Range 1: 10588 to 11484 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
225.6 bits(486) | 0.0 | 100/299(33%) | 0/299(0%) | Minus/Plus |
Query 288 KQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIEENFLK 1184 +++I G L + ++ +KE + N + G+E + ++ DEL+A+ PF RA+++F G + P++ V+TGGS AL V+ + LP +S+ +DS FR SVA GAK+Y DIL G+S LRL+DT++ TL+DE+ F +VIFPKG PIP Y + + G + YGI EGE+NR +LNE F+G R + ++D ++ +S DG + + V+G ++KN L + + Y S + + Y+ + LH + ++ + + D I NFL+ Subject 10588 EKRITGVIDAGILAVMIADLKEKICVNGGTQYTQVKTSNGLETLSMSVDELNAVSEPFVDRAIKIFAEGANELKRSPIVCVLTGGSVALPLVQQKLKTLPYVSRTEYDSKTFRLSVAVGAKIYSDILTGHSDLRLIDTVSQTLSDELSGFTEIVIFPKGHPIPSEYETSFQISGSTMEYGIIEGESNRTWLNEIAFKGTDYRPSNERKSDKVKYEISVDGKLKLSVDGRQLKNTRLPAPVSASAHAYRYVSSMKKYLIQLENNYVDMFSELHGDKISIDDVYDATGAYFDKNILVNFLR 11484
Range 2: 10198 to 10590 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.4 bits(346) | 0.0 | 70/131(53%) | 0/131(0%) | Minus/Plus |
Query 1176 LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQK 1568 L+RVVD++ LF++ ++LE E V+ V TVPA+YNSFKRSF+ AL+GLG P+R ++NEPT+AALY + AVFDFGGGT D+SF+ + N++ V+FS GDNFLGGRDIDRAIV+ ++++ Subject 10198 LVRVVDLVFLFVKGILLETEEAVGKAVSGVVCTVPAEYNSFKRSFLGVALEGLGKPLRALINEPTSAALYGAVRGGALKETYAVFDFGGGTLDISFISRFNNVVSVLFSKGDNFLGGRDIDRAIVQFLRKE 10590
Range 3: 10000 to 10149 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
54.7 bits(113) | 0.0 | 24/50(48%) | 0/50(0%) | Minus/Plus |
Query 1620 TYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 1769 TY IG A + G G LY+NPKRWVGV N + KL P Y VK+ Subject 10000 TYSIGHRAYSDFVAGKPGGLYINPKRWVGVDGYNFQAVKRKLNPEYEVKL 10149
Range 4: 9865 to 9915 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.9 bits(83) | 0.0 | 15/17(88%) | 0/17(0%) | Minus/Plus |
Query 1851 MEVGIDFGTTFSTICFS 1901 MEVG+DFGTTFST CFS Subject 9865 MEVGLDFGTTFSTACFS 9915
Range 5: 9934 to 9987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.8 bits(50) | 0.0 | 9/18(50%) | 0/18(0%) | Minus/Plus |
Query 1785 SGCTPVAGSVYVETQIFI 1838 SGC + S +V TQ+FI Subject 9934 SGCVTLVNSPFVPTQVFI 9987
Range 6: 10203 to 10571 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
91.3 bits(193) | 0.0 | 58/123(47%) | 0/123(0%) | Plus/Minus |
Query 1195 TIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTTL 1563 TIALS+S PP+KLSP E T + N+ SKVPPPKSKTA S L +AA VGS L G+P P A+ KLRL EL SAGTV T T + S SS + STTL Subject 10203 TIALSMSRPPRKLSPFENSTLTTLLNLDMNDISKVPPPKSKTAYVSFSAPPLTAPYKAADVGSFMRALNGLPNPSRATPKKLRLNELYSAGTVQTTPDTALPTASSVSSNIPFTKRKTKSTTL 10571
Range 7: 10921 to 11154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 26/78(33%) | 0/78(0%) | Plus/Minus |
Query 618 SSVILPFKYTVYHISTTHCVSMSI*TGYWTTFRENYHRLKIHYLVR*RIR*SVHQSQSAITCQNIAVNLSPTSHRTSK 851 S++ L F Y++ H ++ + + I Y T +NY + VR R+ V+ SQ A+ NI +NLS HR SK Subject 10921 STIRLTFYYSILHSTSRYLKTCFIFRRYGVTLGKNYDLRET*QFVRQRLGNRVN*SQIAMPR*NITINLSTYGHR*SK 11154
Plum bark necrosis and stem pitting-associated virus, complete genome
Range 1: 9856 to 10617 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
120.2 bits(256) | 0.0 | 62/254(24%) | 0/254(0%) | Minus/Plus |
Query 333 TQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNK 1094 T ++ +G + ++L++ +L+ I P+ RA + K + + V V+ GGSS L VR + ++P I + FD + +R +VA GA +Y +G++ RL+D + N+L++++ F ++ PK PIP T + + + + + EGE+ A LNE F + + + + DG +S + G+ +KN +V L ++ E L +Y++ + + K+ S++ Subject 9856 THTVLLKDGSMRTLNLSNSDLEEICVPYLERAATLVKDVIMSNSVREVDLVLIGGSSVLPGVRKSLLSIPNIRSIYFDKSIYRAAVAVGASLYTASFSGSTRFRLIDCVANSLSNDLKPFFAKLVLPKSHPIPTKVTQNFDMPSYNTAFVLHEGESPNALLNERCFSAPLNTSEFKAGSGILEVVVGEDGRISASLQGKLLKNVVVVQDVLPSTKVLKFQDTVERLIKPEAEKYVSGWQVYSGEDLVSKSPSDR 10617
Range 2: 9379 to 9594 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
72.1 bits(151) | 0.0 | 37/72(51%) | 0/72(0%) | Minus/Plus |
Query 1353 LLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSL 1568 ++ VVD+I L+++ L+ T+ V +A +VPADYNSFKRSFV A LGI VR V+NEPTAA SL Subject 9379 VMPVVDLIYLYIKGLVQLTISQTNLQVGSASCSVPADYNSFKRSFVYTACSALGIGVRAVINEPTAAGFCSL 9594
Range 3: 9631 to 9753 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
64.8 bits(135) | 0.0 | 25/41(61%) | 0/41(0%) | Minus/Plus |
Query 1197 VFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAI 1319 V+DFGGGTFDVS + N++ V+ S GDN LGGRDID A+ Subject 9631 VYDFGGGTFDVSLLAVSNNVIVVVDSRGDNLLGGRDIDAAL 9753
Range 4: 9238 to 9333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.4 bits(71) | 0.0 | 14/32(44%) | 0/32(0%) | Minus/Plus |
Query 1617 LYVNPKRWVGVTRDNVERYVEKLKPTYTVKID 1712 +Y + KRWVG N + KLKP Y V +D Subject 9238 VYRDIKRWVGCNHINESEFRRKLKPEYIVVVD 9333
Range 5: 9387 to 9596 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 35/70(50%) | 0/70(0%) | Plus/Minus |
Query 1351 AKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITSTT 1560 ++E + AAVGSL T T +PR A TKLRL EL*SAGT+ A T V+ S K L K+I STT Subject 9387 SREQKPAAVGSLMTARTPMPRALQAV*TKLRLNEL*SAGTLQEALPTCRFVWEIVSCTKPLIYKYIKSTT 9596
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 10625 to 11119 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
178.9 bits(384) | 0.0 | 79/165(48%) | 0/165(0%) | Minus/Plus |
Query 1065 VVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGG 1559 + D+I LFL+ LI E E T V +VPA YNSFKRSF++ ALKGLG P+R +VNEPTAA L ++ S ++ + VFDFGGGTFD+S + K+G +L VI + GDN+LGGRD+D I++ I ++ + I VS MKE +S+ A T+ +IP+E G Subject 10625 ITDLIALFLKGLITEAETQTGVAVVGVTCSVPAKYNSFKRSFLMTALKGLGKPLRALVNEPTAAGLLGMSVSSNDNTVYGVFDFGGGTFDISMMLKRGKVLGVIGAEGDNYLGGRDVDAKIMKTISASLRSTPKKSSFPIIVSKMKEIVSDTLATTEQIIPLEDG 11119
Range 2: 11114 to 11602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
147.7 bits(316) | 0.0 | 62/163(38%) | 0/163(0%) | Minus/Plus |
Query 585 EGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVS 1073 +G ++ T D+L + PF RAV++F + + P V+TGGS+AL + + ++ ++ V+++ FR SVA GAK+Y D+L S L L+D+L+ TL+D++ F+ ++FPKG+ IP ++ YTVG +V YG++EGE N +LN+ TF+GV+ Subject 11114 DGSRQIASYTLDQLISDSGPFLDRAVQMFSRLVRDLANPPTEVVLTGGSAALPGLVARCMSVKGVTSVLYNKRTFRASVAMGAKIYADMLTSGSDLVLIDSLSQTLSDDLALFRSAIVFPKGTAIPRTFETSYTVGKSEVPYGLYEGEENSTWLNDLTFKGVA 11602
Range 3: 10463 to 10564 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 17/34(50%) | 0/34(0%) | Minus/Plus |
Query 1620 EGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKI 1721 EG LYVNPKRW+G+ N +++KLKP + V + Subject 10463 EGLLYVNPKRWIGMNSRNKHIFMDKLKPQHEVLV 10564
Range 4: 10283 to 10333 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 14/17(82%) | 0/17(0%) | Minus/Plus |
Query 1851 MEVGIDFGTTFSTICFS 1901 MEVGIDFGTTFST+C++ Subject 10283 MEVGIDFGTTFSTLCYN 10333
Range 5: 10358 to 10405 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
26.3 bits(51) | 0.0 | 8/16(50%) | 0/16(0%) | Minus/Plus |
Query 1785 CTPVAGSVYVETQIFI 1832 C +AGS+YV T+I + Subject 10358 CVRIAGSIYVPTEILV 10405
Range 6: 10630 to 11001 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
94.5 bits(200) | 0.0 | 57/124(46%) | 0/124(0%) | Plus/Minus |
Query 1183 LITSTIALSISLPPKKLSPTEKMTHSIFPFFLTNETSKVPPPKSKTANNRSSTRDLAKE*RAAAVGSLTTPLTGIPRPFSASTTKLRLKEL*SAGXXXXXXXXXXDVYLSHSSIKALKNKHITS 1554 LI I S SLPP+ LSP+ +T + FP F E SKVPPPKSKT S D AAVGSLT+ G P+PF A KL L EL AGT T V +S S IK L+ + I S Subject 10630 LIVFIIFASTSLPPR*LSPSAPITPNTFPLFNIIEMSKVPPPKSKTPYTVLSLLDTLIPNNPAAVGSLTSARNGFPKPFKAVIRKLLLNELYFAGTEQVTPTTATPV*VSASVIKPLRKRAIRS 11001
Range 7: 11470 to 11598 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 21/43(49%) | 0/43(0%) | Plus/Minus |
Query 589 TPRNVGSFRKALLFSPSNIPYTTSPPPTVYL*VYEQGIGLPFG 717 TP NV SF + SPS PY TS PTV L GI +P G Subject 11470 TPLNVRSFNQVEFSSPSYNPYGTSDFPTV*LVSKVLGIAVPLG 11598
Range 8: 10279 to 10320 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.0 bits(57) | 0.0 | 12/14(86%) | 0/14(0%) | Plus/Minus |
Query 1864 VLKVVPKSIPTSIS 1905 VL VVPKSIPTSI+ Subject 10279 VLNVVPKSIPTSIT 10320
Nucleotide Sequence (698 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
385.5 | 2559.4 | 9% | 2.765e-106 | 59% | NC_004667 | |
299.4 | 783.2 | 22% | 2.362e-80 | 30% | NC_022072 | |
234.3 | 402.9 | 25% | 9.121e-61 | 39% | NC_016509 | |
135.3 | 491.0 | 39% | 3.26e-55 | 29% | NC_029783 | |
107.4 | 372.5 | 23% | 4.468e-42 | 36% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 7618 to 8163 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
385.5 bits(835) | 0.0 | 178/182(98%) | 0/182(0%) | Minus/Plus |
Query 152 ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGSSKLNE 697 ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFG+SK ++ Subject 7618 ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSD 8163
Range 2: 7617 to 8162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
384.1 bits(832) | 0.0 | 172/182(95%) | 0/182(0%) | Minus/Plus |
Query 153 GVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHETGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HMVGK*FSLVHLVVRST*GIRL*LYCS*W***PHI*SAAVRY*YVGSER*FWF*RKDI*PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VWKLQT*R 698 GVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHE GGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*H+VGK*FSLVHLVVRST*GIRL*LYCS* ***P+I*SAAV Y*YVGSER*FWF*RKD *PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VW Q R Subject 7617 GVGGCIEEQFGGHPAILHL*TGYQ*VRQISECSHEAGGGVDTLDTWC**RSFVYFLLW*V**RRENDDEGIGVVCRLSEAQWWC*HVVGK*FSLVHLVVRST*GIRL*LYCS*R***PYI*SAAVGY*YVGSER*FWF*RKDF*PSCSIFLF*VFSSSRG*SLFCSRST*TLR*VWSFQNFR 8162
Range 3: 7619 to 8143 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
377.3 bits(817) | 0.0 | 170/175(97%) | 0/175(0%) | Plus/Minus |
Query 172 QT*RRV*VDREQKRDYPRLELKT*NKNMEQLG*ISLRQNQNYRSEPTYQYLTAAD*I*GYHHH*LQYNYNLIP*VLRTTRCTRLNYFPTMC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQXXXXXXXXXXXXEHSEICRTY*YPVHRCSIAGCPPNCSSMQPPT 696 QT*RRV*VDREQKRDYPRLELKT*NKNMEQLG* SLRQNQNYRSEPTYQY TAAD*I*GYHH *LQYNYNLIP*VLRTTRCTRLNYFPT C*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPP S*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPT Subject 7619 QT*RRV*VDREQKRDYPRLELKT*NKNMEQLG*KSLRQNQNYRSEPTYQYPTAAD*I*GYHHR*LQYNYNLIP*VLRTTRCTRLNYFPTTC*HHHCASESRQTTPIPSSSFSRRYHTHHKRK*TKLLYQHQVSRVSTPPPAS*EHSEICRTY*YPVHRCSIAGCPPNCSSMQPPT 8143
Range 4: 7618 to 8154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
352.1 bits(762) | 0.0 | 172/179(96%) | 0/179(0%) | Plus/Minus |
Query 161 FGASKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVKYLYVKTKIIAQXXXXXXXXLPTKYEAXXXXXXXXXXXXSPKYYGQQGAQD*TISQPCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQL 697 FG+SKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVK LYVKTKIIAQNRRINI RLPTKY+AIIT NYNITII*SPKYYGQQGAQD*TISQP VSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHL HESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQL Subject 7618 FGSSKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLPTKYKAIITANYNITII*SPKYYGQQGAQD*TISQPRVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLLHESTLRFVVLTDIQFIGVVLPDVPQIVPQCSRQL 8154
Range 5: 7710 to 7931 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
175.2 bits(376) | 0.0 | 74/74(100%) | 0/74(0%) | Plus/Minus |
Query 384 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 605 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA Subject 7710 NPLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 7931
Range 6: 7968 to 8153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
137.6 bits(294) | 0.0 | 59/62(95%) | 0/62(0%) | Plus/Minus |
Query 162 LELPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISNGCRLNMR 347 LE PNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWL IFTSKPKLSLRTDVSISNGCRLN+R Subject 7968 LEAPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISNGCRLNIR 8153
Range 7: 7617 to 7670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 18/18(100%) | 0/18(0%) | Plus/Minus |
Query 645 V*YCRMSPKLFLNAAANS 698 V*YCRMSPKLFLNAAANS Subject 7617 V*YCRMSPKLFLNAAANS 7670
Range 8: 7619 to 7930 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
244.4 bits(527) | 0.0 | 102/104(98%) | 0/104(0%) | Minus/Plus |
Query 385 SWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTHGWEIV*SCAPCCP*YLGD 696 SWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*+RWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLT GWEIV*SCAPCCP*YLGD Subject 7619 SWRLH*GTIWGTSGNTTPMNWISVSTTNLRVLS*SRWRS*YS*HLVLIEKFCLLSFVVSMIAS*ER*RRNWCCLSALRGAVVVLTRGWEIV*SCAPCCP*YLGD 7930
Range 9: 8033 to 8158 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
87.7 bits(185) | 0.0 | 39/42(93%) | 0/42(0%) | Minus/Plus |
Query 157 T*RYLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLEAPNL 282 T*R+LTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLE P L Subject 8033 T*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLELPKL 8158
Range 10: 8005 to 8163 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
80.3 bits(169) | 0.0 | 35/53(66%) | 0/53(0%) | Plus/Plus |
Query 26 SVWGVMFCFEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFGASKLNE 184 SV F F+V+IFN A YFCSKFL V DSLFFVPDP LFVKFGASK ++ Subject 8005 SVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSD 8163
Range 11: 7981 to 8154 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.0 bits(166) | 0.0 | 36/58(62%) | 0/58(0%) | Minus/Minus |
Query 2 FGSSKLNEQIKWIGNKKQTIHNMT*KLRTKITNSLVKYPYLKTKHNTPNRPTKNQQPP 175 FGSSKLNE+ KWIGNKK+TI ++ *KLRTKI +SLVK Y+KTK NR Q+ P Subject 7981 FGSSKLNEEFKWIGNKKETILDLN*KLRTKIWSSLVKNLYVKTKIIAQNRRINIQRLP 8154
Range 12: 7985 to 8152 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
75.3 bits(158) | 0.0 | 35/56(62%) | 0/56(0%) | Minus/Minus |
Query 6 WKLQT*RTD*MDREQKTDYPQHDIKT*NKNNKQLS*ISLPQNKT*HPKPTNQKPTA 173 WKLQT*R *+DREQK DYP+ ++KT*NKN +QL * SL QN+ +PT Q PTA Subject 7985 WKLQT*RRV*VDREQKRDYPRLELKT*NKNMEQLG*KSLRQNQNYRSEPTYQYPTA 8152
Range 13: 7982 to 8158 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
69.8 bits(146) | 0.0 | 35/59(59%) | 0/59(0%) | Plus/Plus |
Query 3 GGCWFLVGRFGVLCFVLR*GYLTKLFVIFVLSFYVMLWIVCFLFPIHLICSLSLELPNL 179 G W L+ RF + VL * +LTKL IFVLSF IV FLFPIHL SLSLELP L Subject 7982 GSRWILIRRF*AIILVLT*RFLTKLLHIFVLSF*FKSRIVSFLFPIHLNSSLSLELPKL 8158
Range 14: 7989 to 8153 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 33/55(60%) | 0/55(0%) | Minus/Minus |
Query 10 LEAPNLTNRLNGSGTKNRLSTT*HKNLEQK*QTA*LNILTSKQNITPQTDQPKTN 174 LEAPNLT L+GSGTK RLS+T* KNLEQK A L I TSK ++ +TD +N Subject 7989 LEAPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLKIFTSKPKLSLRTDVSISN 8153
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 8685 to 9221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
299.4 bits(647) | 0.0 | 137/179(77%) | 0/179(0%) | Minus/Plus |
Query 158 LAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGSSKL 694 LA + +LGDIR Y YELDISKYDKSQ++LMKQVEELILLTLGVD+EVL TFFCGEYDS+V +KELVLSVGSQRRSGGANTWLGN++VLCTLLSV+LRG + Y+VVSGDDSLIFSR LDIDTS LSDNFGFDVK+F QA PYFCSKFLVQ + LFFVPDPLK+F+K G S++ Subject 8685 LAQRISADLGDIRAYTCYELDISKYDKSQASLMKQVEELILLTLGVDKEVLDTFFCGEYDSLVSLASKELVLSVGSQRRSGGANTWLGNTVVLCTLLSVMLRGNEDYYVVVSGDDSLIFSRTELDIDTSSLSDNFGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLKMFIKLGVSRV 9221
Range 2: 8777 to 8992 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 50/72(69%) | 0/72(0%) | Plus/Minus |
Query 387 PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 602 PL+ TDNKV T +FPN V APPLRL* PTD TNS T LSYSPQK V KTSLSTP VK I+SSTCF+R Subject 8777 PLNITDNKVQSTTVFPNQVFAPPLRL*LPTDKTNSLEAKDTKLSYSPQKNVSKTSLSTPRVKRISSSTCFIR 8992
Range 3: 9032 to 9226 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
70.3 bits(147) | 0.0 | 35/65(54%) | 0/65(0%) | Plus/Minus |
Query 153 SLSLELPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISNGCRLNMR 347 S +LE PNL GSGTK S T+N EQK G A L FTS PKLSL +VSISN R +R Subject 9032 SATLETPNLINIFRGSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNSVREKIR 9226
Range 4: 8716 to 8778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
23.1 bits(44) | 0.0 | 9/21(43%) | 0/21(0%) | Plus/Minus |
Query 601 EHSEICRTY*YPVHRCSIAGC 663 E E CRTY P+H C Subject 8716 ETLETCRTYLCPIHNTCTLLC 8778
Range 5: 8736 to 8984 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
71.2 bits(149) | 0.0 | 35/83(42%) | 0/83(0%) | Plus/Minus |
Query 395 YYGQQGAQD*TISQPCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFI 643 ++ QQG + + P V TT +PL +RQ LR H +I TTKE + IN + E +L HL H+ LR VVLT +QFI Subject 8736 HHRQQGTEHHCVP*PSVRTTASPLTPNRQD*LLRG*RHQTVIFTTKERV*DLLINPQS*ENKLFHLLHQRRLRLVVLTYVQFI 8984
Range 6: 9087 to 9221 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.4 bits(132) | 0.0 | 24/45(53%) | 0/45(0%) | Plus/Plus |
Query 44 FCFEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFGASKL 178 F F+V++F AV YFCSKFL LFFVPDP +F+K G S++ Subject 9087 FGFDVKLFRQAVPYFCSKFLVQTDSGLFFVPDPLKMFIKLGVSRV 9221
Range 7: 8728 to 8862 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.3 bits(86) | 0.0 | 23/45(51%) | 0/45(0%) | Minus/Plus |
Query 517 TTPMNWISVSTTNLRVLS*NRWRS*YS*HLVLIEKFCLLSFVVSM 651 T MNW VSTT+L+ L *+RW+S +S* LI + SFVV+M Subject 8728 TRVMNWT*VSTTSLKRL**SRWKSLFS*LWGLIRRS*TRSFVVNM 8862
Range 8: 8888 to 8977 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 12/30(40%) | 0/30(0%) | Minus/Plus |
Query 402 GIGVVCRLSEAQWWC*HMVGK*FSLVHLVV 491 G+ +V SEA+ WC H+V + ++LVV Subject 8888 GVSLVGWESEAKRWCEHLVREHSGALYLVV 8977
Range 9: 9053 to 9181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
25.4 bits(49) | 0.0 | 13/43(30%) | 0/43(0%) | Minus/Plus |
Query 198 VRY*YVGSER*FWF*RKDI*PSCSIFLF*VFSSSRG*SLFCSR 326 + Y*++ ++ W *R+ +* SC++ LF V + ++ C+R Subject 9053 IGY*HLITQ*QLWV*REAL*ASCALLLFEVPCADG*WTVLCTR 9181
Range 10: 9050 to 9232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 25/61(41%) | 0/61(0%) | Minus/Minus |
Query 7 NSSLSLEAPNLTNRLNGSGTKNRLSTT*HKNLEQK*QTA*LNILTSKQNITPQTDQPKTNS 189 + S +LE PNL N GSGTKN + +N EQK* TA L TS ++ + +NS Subject 9050 SKSATLETPNLINIFRGSGTKNSPLSVCTRNFEQK*GTACLKSFTSNPKLSLSDEVSISNS 9232
Grapevine leafroll-associated virus 1, complete genome
Range 1: 8163 to 8663 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 105/167(63%) | 0/167(0%) | Minus/Plus |
Query 176 NNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVK 676 + LGD+ YY YELDISKYDKSQ A MK VE IL+ LGV V+ FFCGEYDSVV ELVLSVG+QRRSGGANTWLGN+LVL TLL++ L+G + S +VV GDDSLIFS+ L ID +L ++FGFD+K+ Q APYFCSK+LV+ D +F+PDP KLF+K Subject 8163 DRLGDVSGYYVYELDISKYDKSQGACMKDVERRILIGLGVSESVVDAFFCGEYDSVVTMGKNELVLSVGAQRRSGGANTWLGNTLVLMTLLAISLKGSEPSLVVVCGDDSLIFSKNELQIDDRILEESFGFDLKLTCQCAPYFCSKYLVRTPDHCYFLPDPFKLFLK 8663
Range 2: 8234 to 8452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.1 bits(175) | 0.0 | 38/73(52%) | 0/73(0%) | Plus/Minus |
Query 387 PLSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMRA 605 P NKV +TK+FPNHV APP PTD T+SF ++TT SYSPQKK T TP I ST FM A Subject 8234 PFKDIANKVIRTKVFPNHVFAPPDLRCAPTDKTSSFFPIVTTESYSPQKKASTTDSDTPRPIKIRLSTSFMHA 8452
Range 3: 8519 to 8680 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 24/54(44%) | 0/54(0%) | Plus/Minus |
Query 159 SLELPNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSI 320 SL + +L+GSG K + S TK EQK GA W S PKLS R SI Subject 8519 SLSKLSFKNNLNGSGKK*Q*SGVLTKYFEQK*GAHWHVNLRSNPKLSSRILSSI 8680
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 8437 to 8700 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
135.3 bits(289) | 0.0 | 57/88(65%) | 0/88(0%) | Minus/Plus |
Query 428 AAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN 691 A+ + LGDI QYY YELDISKYDKSQ+ LMK E +L LGV+ + L FF GEYDS V KEL LS+GSQRRSGGANTWLGN Subject 8437 ASEVEERLGDISQYYCYELDISKYDKSQAGLMKDTERALLSMLGVESDTLDMFFSGEYDSSVSMHNKELSLSIGSQRRSGGANTWLGN 8700
Range 2: 8749 to 8958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
101.0 bits(214) | 0.0 | 38/70(54%) | 0/70(0%) | Minus/Plus |
Query 170 YSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFG 379 + ++ SGDDSLIFS++ LD+DT+ LS +GFDVK+ + + PYFCSK+ V+ D L FVPDP KL +K G Subject 8749 FDLVLASGDDSLIFSKEKLDLDTTTLSQAYGFDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFKLLMKAG 8958
Range 3: 8526 to 8738 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 32/71(45%) | 0/71(0%) | Plus/Minus |
Query 390 LSTTDNKVHKTKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 602 L + DN +KT +FPNHV APPL * P D NS + + T SYSP+K + + SLSTP++ + S F++ Subject 8526 LRSIDNSDNKTIVFPNHVFAPPLLR*LPIDKDNSLLCIETLESYSPEKNISRVSLSTPNILNNALSVSFIK 8738
Range 4: 8802 to 8957 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 23/52(44%) | 0/52(0%) | Plus/Minus |
Query 171 PNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISN 326 P KSL+GSGTK++ S TK EQK G TS P L+ VS S+ Subject 8802 PAFIKSLNGSGTKRKPSFVFTKYFEQK*GTDKSLSLTSNPYA*LKVVVSRSS 8957
Range 5: 8456 to 8512 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
22.6 bits(43) | 0.0 | 8/19(42%) | 0/19(0%) | Plus/Minus |
Query 616 CRTY*YPVHRCSIAGCPPN 672 CRT+ YP+H + PN Subject 8456 CRTWIYPIHNNNTEIYRPN 8512
Range 6: 8842 to 8958 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 19/39(49%) | 0/39(0%) | Plus/Plus |
Query 50 FEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFG 166 F+V++ + +V YFCSK+ D L FVPDPF L +K G Subject 8842 FDVKLNDLSVPYFCSKYFVKTNDGLRFVPDPFKLLMKAG 8958
Range 7: 8458 to 8709 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
39.6 bits(80) | 0.0 | 24/84(29%) | 0/84(0%) | Plus/Minus |
Query 419 D*TISQPCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQFIGVVLPDVPQ 670 D ISQP + T L +RQ QF + ++ KE + +++ + + + H + L VVL IQFI ++L + Q Subject 8458 DHRISQPRICPATPALTPNRQRQFFVVHRNA*VVFPGKEHIEGIALHA*HTQQRPFSVLH*ARL*LVVLGYIQFITIILRYIAQ 8709
Range 1: 6256 to 6489 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 42/78(54%) | 0/78(0%) | Minus/Plus |
Query 428 IRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGN 661 ++ + E+DISK+DKSQ L+KQ+EE++L LGVD EVL+ ++ EY+SV T K L +SV +QRR+GG+NTWLGN Subject 6256 VQNLFCSEVDISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRTGGSNTWLGN 6489
Range 2: 6541 to 6747 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
84.9 bits(179) | 0.0 | 34/69(49%) | 0/69(0%) | Minus/Plus |
Query 170 SYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFG 376 +++ SGDDSL+ SR P+ D LS GFDVK A PYFCSK+++ ED +F VPD KL K G Subject 6541 TFVCFSGDDSLVLSRDPIYFDFFKLSLELGFDVKFTPVATPYFCSKYIINTEDRIFIVPDIFKLVTKLG 6747
Range 3: 6277 to 6480 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
55.1 bits(114) | 0.0 | 28/68(41%) | 0/68(0%) | Plus/Minus |
Query 437 PCVSTTTAPLRADRQHQFLRHRSHDAIILTTKESRQNFSINTKCQEYQLLHLFHESTLRFVVLTDIQF 640 P V TT PLR R R+ A +LTT QN INT+ +Y L+LF++ TLRFV + F Subject 6277 PRVRTTCPPLRVYRNC*TFIERTAHAFVLTTIPPIQNLLINTQATKYHFLNLFYQRTLRFVKFRYVHF 6480
Range 4: 6576 to 6746 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.0 bits(81) | 0.0 | 26/57(46%) | 0/57(0%) | Plus/Minus |
Query 171 PNLTKSLSGSGTKKRLSST*TKNLEQKYGAAWLNIFTSKPKLSLRTDVSISNGCRLN 341 PN +L SGT K LSS L QKYG A FTSKP L S G R N Subject 6576 PNFVTNLKMSGTIKILSSVFIMYLLQKYGVATGVNFTSKPNSKLNLKKSKYIGSRDN 6746
Range 5: 6315 to 6497 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.9 bits(107) | 0.0 | 27/61(44%) | 0/61(0%) | Plus/Minus |
Query 420 TKLFPNHVLAPPLRL*EPTDNTNSFVIVLTTLSYSPQKKVDKTSLSTPSVKSINSSTCFMR 602 T + PNHV PP+ L T+ VL TLSYS KTS STP +S SS CF++ Subject 6315 TIVLPNHVFEPPVLLCASTETVKLLSNVLHTLSYSLLYHQFKTSSSTPKRRSTISSICFIK 6497
Nucleotide Sequence (530 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 2550 to 3035 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
345.6 bits(748) | 0.0 | 148/162(91%) | 0/162(0%) | Minus/Plus |
Query 42 WVCLVAVMSQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSVVVTICTSGASDRLELRGAFDVSKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVHAFIMGNISS 527 W +VAVM+QAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFS+ VS YAKAMVHDNFNVLETL+SMP+AFI KVPGSVVVTICTSGASDRLELRGAFD+SKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSV+AFIMGN+S+ Subject 2550 WGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSNAVSVYAKAMVHDNFNVLETLMSMPRAFIRKVPGSVVVTICTSGASDRLELRGAFDISKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVYAFIMGNVSN 3035
Range 2: 2561 to 3034 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.0 bits(692) | 0.0 | 148/158(94%) | 0/158(0%) | Plus/Minus |
Query 43 LEMFPIMNACTESSVIGRGFPSSVFIAFMTLIESSTIALENTRKRLFFSFLPKVSFETSKAPLSSNLSEAPEVQMVTTTDPGTLQMNALGMDISVSKTLKLSCTIALA*VETTLEKQSPTV*KKSLKTPARLPSLAFIKL*ERILFALSLIA*DITAT 516 LE FPIMNA TESSVIGRGFPSSVFIAFMTLIESSTIALE TRKRLFFSFLPKVSFE SKAPLSSNLSEAPEVQMVTTTDPGTL+MNALG+DISVSKTLKLSCTIALA* ET EKQSPTV*KKSLKTPARLPSLAFIKL*ERILFALSLIA* ITAT Subject 2561 LETFPIMNAYTESSVIGRGFPSSVFIAFMTLIESSTIALEKTRKRLFFSFLPKVSFEISKAPLSSNLSEAPEVQMVTTTDPGTLRMNALGIDISVSKTLKLSCTIALA*TETAFEKQSPTV*KKSLKTPARLPSLAFIKL*ERILFALSLIA*AITAT 3034
Range 3: 2550 to 3032 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
309.9 bits(670) | 0.0 | 125/161(78%) | 0/161(0%) | Plus/Minus |
Query 45 RNVPHYERMYRIFSDW*GFSIFCLHCFHDLD*IFNDSPRKHAQATILQLPTKGLFRNVKSTPELQPV*SSRSTNGNYN*PRYFTNERFGHGYKRLQNVEIIVHHCLSVGGDYTRKTVTHGLKEELEDPGETPLTGFYKVIRANTLRPILNCLRHNGNQTHP 527 RNVPHYER+YRIFS+W GFSIFCLHC HDL+*IF+DSPR+ AQATILQ PT+GL RN+K TPELQPV*SSRS NGN N PRYFT+ER GH +KRLQNVE+IVHHCLS+ GD RKT+ +GLKEELEDPGETPLTGFYKVI ANTLRPILN L HN + P Subject 2550 RNVPHYERIYRIFSNWQGFSIFCLHCLHDLN*IFHDSPREDAQATILQFPTEGLLRNIKGTPELQPV*SSRSANGNNNRPRYFTDERSGHRHKRLQNVEVIVHHCLSIDGDCVRKTIAYGLKEELEDPGETPLTGFYKVIGANTLRPILNRLSHNSDN*TP 3032
Range 4: 2570 to 3034 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
283.3 bits(612) | 0.0 | 126/155(81%) | 0/155(0%) | Minus/Plus |
Query 43 YVSGN*G*GEEYSLL*LYKSQ*GESRRGLQALLSDRG*LFFECSLHLR*GNGAR*FQRFGDAYIHAQSVHL*STWVSCSYHLYFWSFRQVGAQGCF*RFERDLW*EAEE*SLARVFEGYR*RFNQGHESNEDRRWKTPTNH*RFCTCVHNGEHF* 507 Y SG+*G*GEEYSLL*LYKSQ*GESRRGLQALLSDR LFFE SL L *GNGAR* QRFGDAY++AQSVH *STWV C YHL+FWSFRQVGAQGC * FE DL *E EE*SLAR+ GYR RFN GHE NEDRRWKTP N+*RFC CVHNGE F* Subject 2570 YGSGD*G*GEEYSLL*LYKSQ*GESRRGLQALLSDRRRLFFERSLRLC*GNGAR*LQRFGDAYVYAQSVHP*STWVCCCYHLHFWSFRQVGAQGCL*YFEGDLR*ETEE*SLARLL*GYRGRFN*GHEGNEDRRWKTPANY*RFCICVHNGERF* 3034
Range 5: 2569 to 3033 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.3 bits(494) | 0.0 | 124/155(80%) | 0/155(0%) | Minus/Plus |
Query 44 LCLRQLRIGRRVFALITL*KXXXXXXXXXXXXXXRPWVTVFRV*SPPTLRQWCTIISTFWRRLYPCPKRSFVKYLGQL*LPFVLLELQTGWSSGVLLTFRKRPLVGS*RIVACACFRGLSLKIQSRS*KQ*RQKMENPYQSLKILYMRS*WGTFL 508 L LR+LRIGRRVFA ITL*KPVRGVSPGSSSSSFRP VFR SP LRQWCTI STFWRRL CP+RS VKYLG L LPF LLELQTGWSSGV L FR+RP VG+*RIVACA GLS KIQ RS*+Q*RQKMENP Q LKILYMRS*WGTFL Subject 2569 LWLRRLRIGRRVFAPITL*KPVRGVSPGSSSSSFRP*AIVFRTQSPSMLRQWCTITSTFWRRLCLCPERSSVKYLGLLLLPFALLELQTGWSSGVPLIFRRRPSVGN*RIVACASSLGLSWKIQLRS*RQ*RQKMENPCQLLKILYMRS*WGTFL 3033
Range 6: 2686 to 2790 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
58.8 bits(122) | 0.0 | 28/35(80%) | 0/35(0%) | Plus/Minus |
Query 287 VLYK*TLWAWI*ASPKR*NYRAPLP*RRWRLHSKN 391 VLY *TLWA *ASPKR*+YRAPLP* R RL SKN Subject 2686 VLYG*TLWA*T*ASPKR*SYRAPLP*HRRRLRSKN 2790
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 3269 to 3748 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.5 bits(333) | 0.0 | 66/160(41%) | 0/160(0%) | Minus/Plus |
Query 48 WVCLVAVMSQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSVVVTICTSGASDRLELRGAFDVSKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVHAFIMGNI 527 W +VA+M+QA+KDR KS+ S++ IKAS G L + ++ V +S ++ Y K ++ DNF+VLE L++ PK I +VP ++ V I T G + AF V++ + RLR FSRA+VED+IKV+ M +GKP+P+TEDSV+ I+ N+ Subject 3269 WGLVVAIMAQAVKDRLKSLESFSIIKASNGCLVSTINIIYRRVMKIVTSAMTGYFKGVIRDNFSVLELLVNNPKKLIVRVPRAMEVEITTVGGVVEVNTANAFSVARSKMHDNFRKGRLRTFSRALVEDTIKVLGRMVDSEGKPVPVTEDSVYKKIVENL 3748
Nucleotide Sequence (661 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
515.6 | 2479.7 | 27% | 1.722e-145 | 82% | NC_004667 | |
341.1 | 658.7 | 30% | 6.189e-93 | 25% | NC_022072 | |
229.7 | 306.5 | 28% | 2.041e-59 | 41% | NC_016509 | |
234.3 | 423.4 | 15% | 8.519e-61 | 25% | NC_029783 | |
96.8 | 156.1 | 28% | 2.566e-31 | 32% | NC_007340 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1533 to 2189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
515.6 bits(1119) | 0.0 | 212/219(97%) | 0/219(0%) | Minus/Plus |
Query 1 F*EPQEKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS 657 F +P+E+E+LRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCG VCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS Subject 1533 FLKPREREKLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGNVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS 2189
Range 2: 1583 to 2188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
441.4 bits(957) | 0.0 | 195/202(97%) | 0/202(0%) | Plus/Minus |
Query 2 EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALANG*LLLTESENCIE 607 EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S T+APFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT QFTWPALT*YVKLPPISKKHT PHL EKIPLKQLRMALANG*LLLTESENCIE Subject 1583 EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHT*QFTWPALT*YVKLPPISKKHTLPHLLEKIPLKQLRMALANG*LLLTESENCIE 2188
Range 3: 1548 to 2186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
432.7 bits(938) | 0.0 | 177/213(83%) | 0/213(0%) | Plus/Minus |
Query 4 SAYVRKGEEPAYVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILRFSTTVRYRL*SRFG*EVARHV*ISPSCGKKENLIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSEWMTTPDRVGKLYRKLRKEFPQPLLF 642 SAY+RKGE+PAYVREGMFIHLTTLTNIVGQVITFPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVHIHHKTR+ S IA+LRFSTTVR+RL*SRF *+V HV ISPSCGKKE+LIDSPLHIFNV*DW+AY+ VH+ASF++IREAPPNIEEA+ TTPPGKDS+ETAPHG+SEW+TTPDRVG+LYRKL KEFPQ L F Subject 1548 SAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVHIHHKTRIGSRIAVLRFSTTVRHRL*SRFS*KVTGHVRISPSCGKKEDLIDSPLHIFNV*DWIAYMTVHMASFDMIREAPPNIEEAHITTPPGKDSIETAPHGISEWVTTPDRVGELYRKLWKEFPQLLPF 2186
Range 4: 1541 to 2188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
369.9 bits(801) | 0.0 | 180/216(83%) | 0/216(0%) | Minus/Plus |
Query 2 ATGKGEAEGTLSGAFDTVFRLGQE*SSIR*RHAELFQRNLFPEVWWCMLLRYWGELHVSR*SWPRELPRMQPSPRR*RCEAENQ*DSLSFHSWGRFIRV*RPPNRSGFKVCILL*SRIAELRFQS*RGFYGGCVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGR*LPGLQCWSVW*DV*TFLL*RKRVLHLFLRTHF 649 A GKGEAEGTLS AFDTV RLGQE*S IR* HAELFQ NLF EVW C+LLRYWGELHVS SWP EL MQ SPRR*RCEAENQ*D LSFHSWGRF+RV P N SGFKVC+LL*SRIAELRF S GFYGGCVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR*LPGLQCWSVW*DV*TFLL*RKRV HLFL THF Subject 1541 AAGKGEAEGTLSRAFDTVLRLGQE*SPIR*CHAELFQWNLFQEVW*CVLLRYWGELHVSCQSWPCELSCMQSSPRR*RCEAENQ*DPLSFHSWGRFVRVQ*PSN*SGFKVCVLL*SRIAELRF*SRCGFYGGCVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHF 2188
Range 5: 1540 to 1959 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
258.6 bits(558) | 0.0 | 115/140(82%) | 0/140(0%) | Plus/Minus |
Query 231 AAGIYRTHPP*NPRQLWNRNSAILDYSKIQTLKPLRLGGR*TRMNLPQLWKERESH*FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PSRKTVSKAPERVPSASPFPVA 650 AAGIYRTHPP*NP +L NR+SAILDYSK QTLKPL+L G TR NLPQLWKER SH*FSASHL*RLGL CI SS GQL* DT*SSPQYRRS H+HTS KRF *NSSAW *RM DYS*PSR+TVSKA ERVPSASPFP A Subject 1540 AAGIYRTHPP*NPHRL*NRSSAILDYSKTQTLKPLQLEGHWTRTNLPQLWKERGSH*FSASHL*RLGLDCIHDSSHGQL*HDT*SSPQYRRSTHYHTSWKRFH*NSSAWH*RMGDYS*PSRRTVSKALERVPSASPFPAA 1959
Range 6: 1999 to 2139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.2 bits(219) | 0.0 | 41/47(87%) | 0/47(0%) | Plus/Minus |
Query 51 NVHTSHHTDQHCRPGNHLPSSLTYRVPPSKLRRYHTTAPRGT*ELNR 191 NVHTSHHTDQHCRPGNHLPSS TYRV PSKL RY TT PRGT*EL R Subject 1999 NVHTSHHTDQHCRPGNHLPSSPTYRVLPSKLHRYRTTTPRGT*ELCR 2139
Range 7: 1771 to 2187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
276.5 bits(597) | 0.0 | 119/139(86%) | 0/139(0%) | Minus/Plus |
Query 3 KM*SGESMRFSFFPQLGEIHTCLATS*PKRLQSLYLTVVENRRIAIPELTRVLWWMCTIYPRSRWQRLWIRRVRWYSI*LLCSPWSCCMVTAKFTWRNSIR**RGKVITWPTMLVSVVRCMNIPSLT*AGSSPFLTYAL 419 KM*SGESMR SFFPQLGEI TC T * KRLQSL LTVVENRR AI E RVLWWMCTIYPRSR QRLWIRRVRW+S *LLCSPWSCC VT KFTW+NSIR *RGKVITWPTMLVSVVRCMNIPSLT*AG SPFL YAL Subject 1771 KM*SGESMRSSFFPQLGEIRTCPVTF*LKRLQSLCLTVVENRRTAILEPMRVLWWMCTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYAL 2187
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2258 to 2905 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
341.1 bits(738) | 0.0 | 133/216(62%) | 0/216(0%) | Minus/Plus |
Query 4 EPQEKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRT 651 +P EK+ ++E FPEL+I F DSVRSSHP ANA+R CFN FS+RC V F DIGGS TYHVKAG VNCHVCNPVLDVKD+KRRI+E+L++++ G+ Y S+++++EAAS+S+SYCS SQ C R + G+MVDVYD+ ++AEA+D KG ++FDL M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T +Y RT Subject 2258 KPSEKDMIKEAFPELTITFLDSVRSSHPVANAVRGCFNACFSKRCANVKFVDIGGSLTYHVKAGDVNCHVCNPVLDVKDMKRRISEMLYMTSGAGEVYKSTEIISEAASRSISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRT 2905
Range 2: 2305 to 2871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.6 bits(366) | 0.0 | 98/189(52%) | 0/189(0%) | Plus/Minus |
Query 38 TLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEAASVRRSLDTYESPPAVERKRISLILRFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALANG*LLLTESENCI 604 T E C Y SP PT SP+ T VS+SSK TSPLP +SSTG+++ KS PF S ASA S TST+ P S L C+ Q*+ + +AAS S+ SP IS ILRF S TS TGL TWQFT PALT VKLPPIS T HL EK LK R ALA G*LLLTES+N I Subject 2305 TRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASANSSNPRS*TSTMYPPSHLTEHSCEGVEQ*EMERDAASEIISVLL*TSPAPDVMYSISEILRFISFTSSTGLQTWQFTSPALTW*VKLPPISTNFTLAHLFEKQALKHPRTALATG*LLLTESKNVI 2871
Range 3: 2327 to 2518 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
63.8 bits(133) | 0.0 | 27/64(42%) | 0/64(0%) | Plus/Minus |
Query 391 NLIDSPLHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSEWMTTP 582 +L DSPLHI + +A +AVH+A FN++ +A PNI+E + + P + ++T VS MTTP Subject 2327 HLRDSPLHILYIQHGIANMAVHIAGFNMVGQASPNIDELHVSAPL*ETGIKTPADCVSNRMTTP 2518
Range 4: 2612 to 2872 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
35.9 bits(72) | 0.0 | 22/87(25%) | 0/87(0%) | Plus/Minus |
Query 37 YVREGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHKTRVSSGIAILR 297 + R+ + I + T+ V Q ++ H ++ L V+ T QQL+G+H++ +E + L+ IV ++H + + A LR Subject 2612 HTRKFVRI*FSAETHGVYQFVSSTSHAGVQLL*VHLTTTSQQLYGKHEAQVEDHHPFHVQRFG*LVEPKIVDVNHVSPFTPNGAFLR 2872
Range 5: 2271 to 2507 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 31/79(39%) | 0/79(0%) | Plus/Minus |
Query 402 FSASHL*RLGLGCIRGSSRGQL*RDT*SSPQYRRSIHHHTSGKRFR*NSSAWR*RMDDYS*PSRKTVSKAPERVPSASP 638 FSAS+ C GSS +L* S PQYRR+ TS + *N+ R*+ DDYS + +T A E+ P + P Subject 2271 FSASYPLHPARDCKHGSSHRRL*HGRSSFPQYRRTSR*RTSLRNRH*NTRGLR*QQDDYSSLNLRT*L*ALEKPPLSCP 2507
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2129 to 2761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
229.7 bits(495) | 0.0 | 96/211(45%) | 0/211(0%) | Minus/Plus |
Query 7 KERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVR 639 KE L FPEL I F DSV SSH NA+RSCFN +++ + GV F DIGGS YHV+ G +CH CNPVLD KD +RR E L L+TA +L + A+K+++YC +++ CD +A GFMVDVYD+ ++A+A++KK +F+L LMFP+EL +G + + EL V R+GD + Y VG G+ Y HS + FF + V+ Subject 2129 KESLTRAFPELFITFLDSVSSSHSLCNAVRSCFNSLYASKYRGVPFVDIGGSVAYHVRNGDKDCHCCNPVLDYKDCRRREEECLRLATAEEKVMTVESVLKKEAAKNITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQ 2761
Range 2: 2479 to 2703 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
41.4 bits(84) | 0.0 | 31/75(41%) | 0/75(0%) | Plus/Minus |
Query 65 SPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQ 289 SP PT+ SP T+ SS P SS GNI+ SN F S A A S TST+KP AL SQ Subject 2479 SPTPPTVYIITSPFRTTSTPSSGIVRLPSLAVSSIGNIKHNSNIFISFFSSACANSKTSKS*TSTMKPTGAL*SQ 2703
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 2664 to 3284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
234.3 bits(505) | 0.0 | 94/207(45%) | 0/207(0%) | Minus/Plus |
Query 22 EKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT 642 EK L + FPEL ++F DSV SSHP NA+R CFN +FS + F DIGGS +YH+K G+VN H CNP +D KD KRR +E+L L L + ASK+ ++C ++++ C + +AGFMVDVYD+S +VA ++ KG FD+ M PVEL+ +G ++EL+T+V R+GD L Y+VG G+ Y+HSF V T Subject 2664 EKSLLTQHFPELKLEFKDSVFSSHPMCNAVRMCFNALFSHNYKDIPFVDIGGSISYHIKHGNVNAHCCNPTVDAKDAKRRESELLTLRRESYGDATIQQLSSSVASKTATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLT 3284
Range 2: 2708 to 2899 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
42.8 bits(87) | 0.0 | 30/64(47%) | 0/64(0%) | Plus/Minus |
Query 407 RFTSLTSRTGLHTWQFTWPALT*YVKLPPISKKHTPPHLREKIPLKQLRMALANG*LLLTESEN 598 RF SL S GL FT+P L * LPPIS L EK LK + AL G*L T S N Subject 2708 RFASLASTVGLQQ*AFTFPCLI**DMLPPISTNGMSL*L*EKRALKHILTALHIG*LEKTLSLN 2899
Range 3: 2975 to 3145 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.6 bits(78) | 0.0 | 24/57(42%) | 0/57(0%) | Plus/Minus |
Query 161 SSTGNIRAKSNTNAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTDFEA 331 SSTG+I+ S P ++ AT SYTSTI PAS Q S +Q FEA Subject 2975 SSTGSIKTMSKVLTPLIAKLRATSYELRSYTSTINPASHFLVQHLVSFMQKVAVFEA 3145
Range 4: 3176 to 3286 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
29.9 bits(59) | 0.0 | 17/37(46%) | 0/37(0%) | Plus/Minus |
Query 20 KVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSS 130 +V+ T KEC Y SP PTL* SP T V +S Subject 3176 QVRREKTF*KECWYESPVPPTL*VSRSPLRVTTVFNS 3286
Range 5: 2694 to 2897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 23/68(34%) | 0/68(0%) | Plus/Minus |
Query 409 LHIFNV*DWVAYVAVHVASFNVIREAPPNIEEAYTTTPPGKDSVETAPHGVSEWMTTPDRVGKLYRKL 612 L +F V WV +++H+ ++I A I E K+ VET P+ V+ MT D V KL +L Subject 2694 LRVFGVHCWVTTMSIHIPVLDMIGYASSYIHEWDVLIIVRKEGVETHPYCVTHRMTREDTVLKLQFQL 2897
Range 6: 3042 to 3260 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 18/73(25%) | 0/73(0%) | Plus/Minus |
Query 46 EGMFIHLTTLTNIVGQVITFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEYQRTLLIHSLCHLLRGYIVHIHHK 264 +G+ + ++ ++ + + I + ++FL V+ +G+HK +E + HL+ IVHIHHK Subject 3042 KGVLV*ISRSSHTISEQIPLTRYNGVQFLNSVRPVSSY*FYGKHKDDVEGSHPFNSQTPSHLI*AQIVHIHHK 3260
Tomato chlorosis virus segment RNA 1, complete sequence
Range 1: 1794 to 2069 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.8 bits(205) | 0.0 | 38/92(41%) | 0/92(0%) | Minus/Plus |
Query 367 EKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGG 642 EK ++ ++FPEL + F+D+ SSHP A A+R C N I ++RCG F D GG +++ N HVC P++D KD R I+ L T G Subject 1794 EKRKVIDMFPELCLNFTDTSYSSHPIATAIRCCENFIMAKRCGNEDFIDAGGDVVHYMLESVKNVHVCTPIVDTKDAHRHISRSAMLDTMWG 2069
Range 2: 2082 to 2363 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 30/94(32%) | 0/94(0%) | Minus/Plus |
Query 37 VSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNV 318 VS+C +++ C V+VYD++ +Q+A+A+ A FD +L+ P E+ +VYL V GD + Y G GE Y H N+ Subject 2082 VSFCEYKTETCTVEKTNIVAVEVYDMTLKQMAQALLSHKAKRFDFSLIIPPEVCDPVCDVYLLNNSLHVTNNGDKIEYAYGDFGESYFHDRENL 2363
Nucleotide Sequence (1359 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
853.8 | 5680.4 | 38% | 0 | 88% | NC_004667 | |
192.6 | 766.4 | 34% | 2.731e-97 | 32% | NC_022072 | |
172.4 | 304.1 | 29% | 3.371e-45 | 23% | NC_016509 | |
154.6 | 253.4 | 12% | 2.007e-36 | 43% | NC_018458 | |
79.4 | 296.9 | 10% | 9.87e-36 | 35% | NC_030746 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 4647 to 5732 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
853.8 bits(1857) | 0.0 | 351/362(97%) | 0/362(0%) | Minus/Plus |
Query 252 LAEGKQVKAEPPRQRNLTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS 1337 +AE KQV+ E P+QR+LTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPR LEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFS KCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYV+KCEWLRADNPVMAL+PDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS Subject 4647 VAEKKQVQVEQPKQRSLTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRALEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSTKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVRKCEWLRADNPVMALEPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS 5732
Range 2: 16035 to 16283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 80/83(96%) | 0/83(0%) | Minus/Plus |
Query 2 IQRAGYLETYLGDGQADTDIFFDVLTNNRAKVRWLVNKDHSAWCGILDDLKWEESSKEKFKGRDILDTYVLSSDYPGFK*SCF 250 IQRAGYLETYLGDGQADTDIFFDVLTNN+AKVRWLVNKDHSAWCGIL+DLKWEES+KEKFKGRDILDTYVLSSDYPGFK*SCF Subject 16035 IQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCF 16283
Range 3: 4649 to 5731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
797.0 bits(1733) | 0.0 | 350/361(97%) | 0/361(0%) | Plus/Minus |
Query 253 E*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCSHHIEYVDXXXXXXXXXXDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFENLVAIVASLYTSSCTPQEHVLNIQSCLPALPSLIVRFLCLGGSAFTCFPSA 1335 E*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SG RAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSS+EFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHL+EKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSR RGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFENLVAIVASLYTSSCTPQEHVLN+QSCLPALPSLIV+ LCLG S TCF SA Subject 4649 E*KMRSVPDL*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGSRAITGLSALSHSHFLT*SCSHHIEYVDLPLTSLPLPSDRALPPDFGVIVLVAPWLCGCWFGTPGDFSSDTPPANCNILPTPKTRRVALNVKLMRPSSMEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLVEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRARGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFENLVAIVASLYTSSCTPQEHVLNMQSCLPALPSLIVKLLCLGCSTCTCFFSA 5731
Range 4: 16165 to 16284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
95.5 bits(202) | 0.0 | 39/40(98%) | 0/40(0%) | Plus/Minus |
Query 1 ESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHPISH 120 ESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNH ISH Subject 16165 ESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH 16284
Range 5: 16028 to 16174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 47/49(96%) | 0/49(0%) | Plus/Minus |
Query 111 NIPHHALWSXXXXXXXXXXXXVKTSKNISVSACPSPKYVSR*PARCIRM 257 NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCI + Subject 16028 NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISL 16174
Range 6: 4702 to 5763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
775.4 bits(1686) | 0.0 | 337/354(95%) | 0/354(0%) | Minus/Plus |
Query 221 STKVRPVNSFVCLGRVPAVCSWMCTTKRLSPPGSQTHLPLSIT*KGGVRSFSQSWVRGIPIMVVAMFHQGGLVS*RIS*RQLSTQASLTIV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRATIFLCLAVFKGRTCIQ*TLSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLRSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIRIQRAGYLETY 1282 S K RPVNSF CL RVPAVCSWMCTTKRLSPPGSQTHLPLSIT*KGGVRSFSQSWVRGIPIMVVAMFHQGGLV *RIS*RQLSTQAS T V*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LR TIFLCLAVFKGRTCIQ*T STKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITL SVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFI+ + A ETY Subject 4702 SMKARPVNSFACLERVPAVCSWMCTTKRLSPPGSQTHLPLSIT*KGGVRSFSQSWVRGIPIMVVAMFHQGGLVP*RIS*RQLSTQASSTTV*CRSTRWVEAYHSTLMTRSAIHQITLS*RSISWGRQTSRLSAGRVVRSWS*T*LRVTIFLCLAVFKGRTCIQ*TPSTKGASV*RSGQLGASLV*AGCCS*PAACRMRSHQVFQTSNHRAKVLPEQSHQNRGARLYLREVVGKSRGGRHTRYGANKITLGSVSGSGLIIQ*WLLNLTTPQ*HLKWLKPGPLKMPSWST*SIWL*ALRGHTGRCLWLEILPSLPPKVF*KYLIKFMNHYRAFTFTSRAQISFFIQHKTACV*ETY 5763
Range 7: 16036 to 16284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.4 bits(359) | 0.0 | 77/83(93%) | 0/83(0%) | Minus/Plus |
Query 1 YNVPVT*KHI*ETGRQTLIYFLTS*PTTEQR*GG*LIKTIARGVGYWMI*SGKRAARRNLRGETY*ILTFYRLIIQGLNEVAF 249 YN PVT*KHI*ETGR TLIYFL S*PTT+QR*GG*LIKTIARGVGY MI*SGKRA RRNLRGETY*ILTFYRLIIQGLNEVAF Subject 16036 YNAPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAF 16284
Range 8: 4650 to 5291 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
461.6 bits(1001) | 0.0 | 197/214(92%) | 0/214(0%) | Plus/Minus |
Query 693 IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDRVY*MQVRPLKTARHKKIVARSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGKCV*EPGGDSRFVVHIQLHTAGTRPKHTKLFTGLTFVDRQIPLPGRFGFYLFPLS 1334 IRHAAG*LQHPAYTKDAPSCPERQTDAPFVD VY*MQVRPLKTARHKKIV RSYVYDHDLTTLPAL+REVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*T+V+DAWVLNCR*DIL* TRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGKCV*EPGGDSRFVVHIQLHTAGTR KH KLFTGL F+DRQ PL G YLF LS Subject 4650 IRHAAG*LQHPAYTKDAPSCPERQTDAPFVDGVY*MQVRPLKTARHKKIVTRSYVYDHDLTTLPALSREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TVVEDAWVLNCR*DIL*GTRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGKCV*EPGGDSRFVVHIQLHTAGTRSKHAKLFTGLAFIDRQTPLFGLLDLYLFFLS 5291
Range 9: 5334 to 5729 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
329.6 bits(713) | 0.0 | 131/132(99%) | 0/132(0%) | Plus/Minus |
Query 255 MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST 650 MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTL NVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST Subject 5334 MKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLPNVILFAPYRVCRPPLDFPTTSLR*SLAPRFWCDCSGST 5729
Range 10: 16035 to 16283 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.2 bits(317) | 0.0 | 78/83(94%) | 0/83(0%) | Plus/Minus |
Query 2 KATSFKPWIIRR*NVSI*YVSXXXXXXXXXXXXQIIQYPTPRAMVFIN*PPYLCSVVG*DVKKYISVCLPVS*ICF*VTGTLY 250 KATSFKPWIIRR*NVSI*YVSPLKFLL ALFPLQIIQYPTPRAMVFIN*PPYLC VVG*D+KKYISV LPVS*ICF*VTG LY Subject 16035 KATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGALY 16283
Range 11: 4649 to 5356 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
521.6 bits(1132) | 0.0 | 223/236(94%) | 0/236(0%) | Minus/Plus |
Query 628 G*GETGKSRTAQAEESDDQRR*GR*TALYV*DVFLRCAAGCVQRSDYRHQVLKRIYLCR*LEREECGLFLKAG*GVYL*WW*PCFIRVASCPRGYLNGN*VPKRL*PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFGRLFSYALRFSKDALAFSKLYRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT 1335 G* +TG SR AQ EE DDQ R GR*TAL+V*+VFLRCAAGCVQRSDYRHQVLKRIYLCR*LEREECGLFLKAG*GVYL*WW*PCFIRVASCPRGYLNGN*VPKRL PLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG LFSYALRFSKDALAFSKL+RRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT Subject 4649 G*EKTGTSRAAQTEEFDDQ*RQGR*TALHV*NVFLRCAAGCVQRSDYRHQVLKRIYLCR*LEREECGLFLKAG*GVYL*WW*PCFIRVASCPRGYLNGN*VPKRLRPLFSAEVQDGWRRTIPR**RGVLSIR*PYLDGQSRGEGKLLD*VQEGW*GHGHKRSFG*LFSYALRFSKDALAFSKLHRRRAHQFDVQGNSARLWCRQDVAVSRRRVG*EVTRCSKPATTEPRCYQNNHT 5356
Range 12: 5408 to 5650 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
179.3 bits(385) | 0.0 | 81/81(100%) | 0/81(0%) | Minus/Plus |
Query 334 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC 576 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC Subject 5408 EVDILDMVRTRLR*EV*VAQG**SSDGS*T*LHPNDI*SG*NRDL*RCRRGVLEVSGYRH*EDIQGVAYG*KYCRHYRRRC 5650
Range 13: 16034 to 16282 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
166.9 bits(358) | 0.0 | 79/83(95%) | 0/83(0%) | Minus/Plus |
Query 3 DTTCRLPRNIFRRRAGRH*YIF*RLNQQQSKGKVVS**RP*RVVWDIG*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MKLL 251 DTT RLPRNIFRRRAG H*YIF* LNQQQSKGKVVS**RP*RVVWDI *FEVGREQQGEI*GERHTRYLRFIV*LSRV*MKLL Subject 16034 DTTRRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MKLL 16282
Range 14: 5702 to 5731 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
28.6 bits(56) | 0.0 | 10/10(100%) | 0/10(0%) | Minus/Plus |
Query 253 QVGHRSHFSF 282 QVGHRSHFSF Subject 5702 QVGHRSHFSF 5731
Range 15: 5095 to 5730 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
477.1 bits(1035) | 0.0 | 209/212(99%) | 0/212(0%) | Plus/Minus |
Query 254 NEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV*EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR*SLLNASASFENRKA*ENSRPKLRL*P*PYHPSCT 889 NEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQV EPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRR SLLNASASFENRKA*ENS PKLRL*P*PYHPSCT Subject 5095 NEK*DLCPTCKRESPVVIHKLD*VLSEHLRR**RQYF*P*ATPCMSSQCL*PDTSSTPRRHLQRSRF*PLQMSLGCSQVQEPSLDYQP*ATHTS*RNLVRTISSMSTSP*LPYHFPQIEPCPPILV*LFW*HLGSVVAGLEHLVTSHPTRRRLTATSCLHQRRAELP*TSN*CALRRWSLLNASASFENRKA*ENSHPKLRL*P*PYHPSCT 5730
Range 16: 4645 to 5049 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
301.2 bits(651) | 0.0 | 122/135(90%) | 0/135(0%) | Plus/Minus |
Query 935 GYLMDSTPRHQRGMVRLHPSCTSALNNGQRRLGT*LPLRYPLGHEATLMKHGYHHYRYTPHPALRKRPHSSLSSYRQR*MRLRTWWR*SLRCTHPAAHRRNTS*TYKAVYRPYLR*SSDSSAWAVRLLPVSPQPN 1339 GYLMDSTPRHQRGMVRLHPSCTSALN+G+RRLGT*LPLRYPLGHEATLMKHGYHHYRYTPHPALRKRPHSSLSSYRQR*MRLRTWWR*SLRCTHPAAHRRNT *T KAVYRP L *SS+SS WA RL+PV QP+ Subject 4645 GYLMDSTPRHQRGMVRLHPSCTSALNSGRRRLGT*LPLRYPLGHEATLMKHGYHHYRYTPHPALRKRPHSSLSSYRQR*MRLRTWWR*SLRCTHPAAHRRNTF*TCKAVYRPCLH*SSNSSVWAARLVPVFSQPH 5049
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 5801 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
192.6 bits(414) | 0.0 | 80/159(50%) | 0/159(0%) | Minus/Plus |
Query 747 QLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRAT 1223 +L++ + ++ F F + L GR AVFFS+ G Y+YNGGSH S GWP VL++I+ Y FDHCLVQ+Y +GG + FHAD+E CYP DNPILTVN+ G A+F +C+ VAS D F+M GFQR + H+V S EGRISLTFR+T Subject 5801 KLEIVRVEGLTDAYAGGFIFHERLPGRVAVFFSRNGAPYSYNGGSHPSRGWPHVLDEIIVKCGYLPYFDHCLVQQYSVGGSIGFHADNERCYPPDNPILTVNMRGDADFKTECKDCKVRRTYMVASDDVFVMGQGFQRRNRHAVVSKTEGRISLTFRST 6277
Range 2: 6434 to 6793 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
156.4 bits(335) | 0.0 | 62/120(52%) | 0/120(0%) | Minus/Plus |
Query 255 KALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFH 614 K SE + R + STY++W EQD+V KC+WL+AD+P++AL+P M FE V T T+EDA +EYLKY AIGIER Y A + IAV A+GVLK P Q YE LPG YK + ++H Subject 6434 KPKSEANTRSTRRESTYTVWTEQDFVIKCDWLKADDPILALRPGTPRMAFESVATRTTEDACIEYLKYTAIGIERLYNAFIAVSKIAVRDAKGVLKFPAQAYEQLPGLRAYKRHDEYVYH 6793
Range 3: 16926 to 17162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 27/79(34%) | 0/79(0%) | Minus/Plus |
Query 11 QRAGYLETYLGDGQADTDIFFDVLTNNRAKVRWLVNKDHSAWCGILDDLKWEESSKEKFKGRDILDTYVLSSDYPGFK* 247 +R YL Y G + I V+ ++ V +++ +H W G+ DL WE++ KG+D+LD +L +YPGFK* Subject 16926 KRVTYLCEYDSLGGSVETITVKVVKDDGTIVDVVIDNNHKCWAGLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK* 17162
Range 4: 6001 to 6276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.0 bits(190) | 0.0 | 48/92(52%) | 0/92(0%) | Plus/Minus |
Query 748 VALNVKLMRPSSIEFTECKCVL*KPQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSK 1023 V LNVKL+ PS E T C +L*KP I S EAT LH + K A P TV IGLS G*H S SAWN PP Y TKQWSK Subject 6001 VDLNVKLILPSVFETTACLFLL*KPCPITNTSSEATM*VRLTLQSLHSVLKSASPLMFTVSIGLSGG*HRSLSAWNPIEPPTEYC*TKQWSK 6276
Range 5: 6496 to 6768 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
88.1 bits(186) | 0.0 | 49/91(54%) | 0/91(0%) | Plus/Minus |
Query 280 L*T*KPGSDS*T*LGTFRTPSAVVTAIFLAISNALYVLSMPIARYFKYSTTASSEVPVLTTSNVIGV*SGLRAITGLSALSHSHFLT*SCS 552 L* KPG+ S* G F TP A +TAI L NALY LS+PIA YF+YS ASS V V T S I G RA G SA + SH +T SCS Subject 6496 L*ALKPGNCS*ACAGNFSTPFASLTAILLTAINALYSLSIPIAVYFRYSIHASSVVLVATLSKAILGVPGRRAKIGSSAFNQSHLITKSCS 6768
Range 6: 5854 to 5973 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.4 bits(95) | 0.0 | 22/40(55%) | 0/40(0%) | Plus/Minus |
Query 1051 ISSRTRGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKV 1170 ISS T G P E WLPPL Y +P EK TA LP S K+ Subject 5854 ISSSTCGQPLEGWLPPLYEYGAPFLEKNTATLPGNRS*KI 5973
Range 7: 5852 to 6277 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
68.0 bits(142) | 0.0 | 48/142(34%) | 0/142(0%) | Plus/Minus |
Query 747 SCPERQTDAPFVDRVY*MQVRPLKTARHKKIVARSYVYDHDLTTLPALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVKDAWVLNCR*DIL*DTRPP**NMATTIIGIPLTQL*EKDRTPPFQVIDKGK 1172 S PE QTD+ + M V PLK H K + RS+ T+ L E+C+ + R V+ +A +ISVE Y +T+ +LL+ MV+ V D++* P * +AT+I+ I + EK PP Q + K K Subject 5852 SRPECQTDSALCL*NHRMPVPPLKALPHYKHIIRSHHVGAPNFTVLTLRLEICVASHVHR*YWVVWGVAPFIISVESYRTTYRILLNQAMVEVRQVTTFHNDLV*HMWPTP*RVATSIV*IRCSIPREKHCNPPRQSLVKDK 6277
Range 8: 6446 to 6829 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.0 bits(129) | 0.0 | 41/128(32%) | 0/128(0%) | Plus/Minus |
Query 219 KYVSR*PARCIRMKNEICARLVNVKAR**FINLIRYFQNTFGGSDGNISSHKQRPVCPLNAYSQILQVLHDGIFRGPGFNHFKCHWGVVRFKSHHWIISPEPLTLLNVILFAPYRVCRPPLDFPTTSL 602 +Y+++ A R+ N + LV+ +AR ++L R Q+TF S GN++ +R V PLN +LQVL I P + K H KS + IIS +P+ L + +L P + P P L Subject 6446 RYIAQPQAILRRVVNVLVMPLVSPQARQLLVSLCRELQHTFCVSHGNLADSNKRIVQPLNPNRCVLQVLDTRILGRPCSHTLKSHPRRAWTKSQNRIISLQPIALNHKVLLRPDCISAFPPSAPGVRL 6829
Grapevine leafroll-associated virus 1, complete genome
Range 1: 5276 to 5716 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
172.4 bits(370) | 0.0 | 66/147(45%) | 0/147(0%) | Minus/Plus |
Query 753 ATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR 1193 A + ++ FVD L+GR F+SK Y YNGGSH S GW + L+++ +K +DHCL+QKY+ G + FHADDE+CY S ++TVNL G+A F ++ K G+++ + GD F+M G QR HSV S+DEGR+S+T R Subject 5276 ARKLVSSDIFVDKLRGRDVAFYSKYSRRYVYNGGSHASQGWNKALDELREELKLDESYDHCLIQKYRKGATIGFHADDEKCYTSGVSVVTVNLNGQARFRVRSNKTGEIVEHLLGDGDVFVMSPGMQRDFKHSVESLDEGRVSITLR 5716
Range 2: 5867 to 6157 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
37.3 bits(75) | 0.0 | 22/97(23%) | 0/97(0%) | Minus/Plus |
Query 333 SGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGV 623 S S + R+ +ST E + K W+ ++PV+ ++ + + +KT +E +E++ YLA + L AR++ T + V Subject 5867 SSSSGESVATVRQSASKSTIGTAVEMGCIDKDSWVLGEDPVLGIQSFNDVVYCKDLKTAGTEAPAIEFIMYLARRCFDLFIKLKRARDLVAKTDKRV 6157
Range 3: 6164 to 6232 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
27.2 bits(53) | 0.0 | 10/23(43%) | 0/23(0%) | Minus/Plus |
Query 261 KVPNQVYESLPGFHVYKSGTDLI 329 K P VYE+LPG VY + ++ Subject 6164 KFPLAVYENLPGLRVYDANFKVV 6232
Range 4: 5359 to 5649 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 35/97(36%) | 0/97(0%) | Plus/Minus |
Query 820 PQGIRK*SPEATFMTMTLPPFLHLIEKFAFPTRLTVKIGLSDG*HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDETWLPPL*VY 1110 P I K SP + P K A P + TV D *H SSSA N P LYFC KQ S + + SS P PPL* Y Subject 5359 PGLITKTSPSPRRCSTISPVLFDRTLKRA*PFKFTVTTLTPDV*HFSSSA*NPIVAPFLYFCIKQ*S*LSSNFSSSRSSSSALFQP*LACEPPL*TY 5649
Range 1: 1894 to 2325 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
154.6 bits(331) | 0.0 | 64/144(44%) | 0/144(0%) | Minus/Plus |
Query 753 FSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFR 1184 F ++D LKGR F+SK GYTY GGSH+S G P L ++ ++ +DHCLVQKY+ G +PFHADDE+CY + ++T+N+ G A F +K +V + + GD +MP G Q + HSV EGRISLTFR Subject 1894 FLKQVKYLDKLKGRVCAFYSKYSTGYTYTGGSHISQGMPESLVELRRSMGLGEEYDHCLVQKYEKDGAIPFHADDEKCYLPGSCVVTLNMHGTAEFMLKENGKEEVHRVTLEDGDVLVMPEGVQENYKHSVLVKSEGRISLTFR 2325
Range 2: 1893 to 2129 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
62.9 bits(131) | 0.0 | 34/79(43%) | 0/79(0%) | Plus/Minus |
Query 949 *HSSSSAWNGTPPPILYFCTKQWSKTLGYLIAVKISSRTRGHPDETWLPPL*VYPSPSFEKKTALLPFKLSTKVNAFEN 1185 *H SSSA G P YF T+QWS + I ++ S+R G P E PP+ VYP FE K LP LS + F N Subject 1893 *HFSSSA*KGMAPSFSYF*TRQWSYSSPNPIDLRNSTRDSGIPWEICEPPVYVYPVEYFE*KAQTLPLSLSRYLTCFRN 2129
Senna mosaic virus isolate Brazilian, complete genome
Range 1: 1879 to 2025 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 26/49(53%) | 0/49(0%) | Minus/Plus |
Query 876 FDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKG 1022 F+ CLVQKY+ G +PFH D+E CYP + +LT+NL G+A FS+ C+ G Subject 1879 FNQCLVQKYERGASIPFHRDNEPCYPKGHQVLTINLEGQAEFSVSCKSG 2025
Range 2: 1732 to 1854 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
59.3 bits(123) | 0.0 | 23/41(56%) | 0/41(0%) | Minus/Plus |
Query 1038 DNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAI 1160 D LKGR A FFSK + Y+Y GGSH S GWP L+ IL + Subject 1732 DRLKGRLAYFFSKDNKPYSYTGGSHASRGWPNWLDSILATV 1854
Range 3: 2050 to 2151 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.5 bits(106) | 0.0 | 20/34(59%) | 0/34(0%) | Minus/Plus |
Query 744 GDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATR 845 G YFL P GFQ +H H+V S+ RISLTFR T+ Subject 2050 GTYFLSPPGFQESHQHAVKSLSASRISLTFRCTQ 2151
Range 4: 1879 to 2016 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
43.7 bits(89) | 0.0 | 16/46(35%) | 0/46(0%) | Plus/Minus |
Query 885 ALNREVCLPHEIDRQDRVI*WIALLVISVEWYASTHLVLLH*TMVK 1022 A +R+ CL E+ + + W+A L++ ++WYA + + LH* +VK Subject 1879 ARHRKFCLTLEVYGEHLMALWVAWLIVPMKWYARSPFIFLH*ALVK 2016
Nucleotide Sequence (982 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 12160 to 13140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
762.6 bits(1658) | 0.0 | 323/327(99%) | 0/327(0%) | Plus/Plus |
Query 2 VSVQVGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE 982 VSVQVGKYVDVTQNLESTIVPL+VMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYD+RVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKP VPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKG+VEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE Subject 12160 VSVQVGKYVDVTQNLESTIVPLRVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDVRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPCVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE 13140
Range 2: 12160 to 13140 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
753.4 bits(1638) | 0.0 | 322/327(98%) | 0/327(0%) | Minus/Minus |
Query 2 FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RTVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDFSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRHIRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY*QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNF*RHDRTF*ILRYVHILPYLNRH 982 FVRLDIVYNASVICGVDRISHLRSYTISRVIR*R VYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLD SLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRH RF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPY QIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHN *RHDRTF*ILRYVHILPYLNRH Subject 12160 FVRLDIVYNASVICGVDRISHLRSYTISRVIR*RPVYITQRLPIVPANAVMSPSQTCEIAIVPT*YTLSVYPALF*YSKGTIFYPP*RNLLDSSLYPHIEEIRASFNPGSVCAVNGVVYQYNY*GHHWGQS*LIVFLH*TAHQLLGDLRAYLSPFTCRHLVT*PREIGRKLVKGVE*LYRHTRF*VFNTPGCVLVEKQSYDQLERSDHVIYPSYSYVVGKICWSSPYQQIS*HVF*PLLTSSQG*HLN*ESHRVGSVCRNCIGSGPSYFIRQQFLQVRIKIYVSGYHLR*TNMC*SSSFLYFHNS*RHDRTF*ILRYVHILPYLNRH 13140
Range 3: 12161 to 13138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
726.9 bits(1580) | 0.0 | 322/326(99%) | 0/326(0%) | Minus/Minus |
Query 3 RSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTYRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLCRRKNLLVVSVLADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNFALRPHTSLPEPT 980 RSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLT RLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLL RRKNLLVVSV ADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLN ALRPHTSLPEPT Subject 12161 RSS*YSV*C*RDLRC*SYFSP*KLYNQPCHTLTSRLHNSASSNCSCECRNVA*PDM*DRYSTYIIHVERLSRAFLIF*RHDLLPPVTKPSRLFPLSSH*GNPGVF*SW*RLCRKWSSIPV*LLRPSLGSILTYSFPPLDGAPTSRRSPGISFPLYLSSSRNLT*RNRTKARERGRMTL*AHTVLSL*YPRVCPC*KTIL*PA*A*RSRHIPKLLLRRRKNLLVVSVPADILARLLTTAHEQSGVTS*LRKP*SR*RMPKLYRFWP*LLHPTAIPASSYKNLRKRIPPSVN*HVLILVFSLFP*LLTARSYFLNSALRPHTSLPEPT 13138
Range 4: 12159 to 13139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
708.1 bits(1539) | 0.0 | 323/327(99%) | 0/327(0%) | Minus/Minus |
Query 1 SFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTFPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNLEK*DESS*KGSNDSIGTYGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLMS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITFNGTIVLSKFCVTSTYFPT*TDT 981 SFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFST PFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNLEK*DESS*KGSNDSIGT+GFKSLIPPGVSLLKNNLMTSLSVAITSYTQATL S*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISIT NGTIVLSKFCVTSTYFPT*TDT Subject 12159 SFVLI*CIMLA*SAVLIVFLTLEVIQSAVSYANVPST*LSVFQLFLRMP*CRLARHVRSL*YLHNTR*AFIPRFSDILKARSSTPRNETFSTLPFILTLRKSGRLLILVAFVP*ME*YTSIIIKAITGVNLNL*FSSIRRRTNFSAISGHIFPPLPVVIS*LNLEK*DESS*KGSNDSIGTHGFKSLIPPGVSLLKNNLMTSLSVAITSYTQATLTS*EKFAGRLRTSRYPSTSFNHCSRAVRGNILTKKAIESVAYAETVSVLALVTSSDSNSCKFV*KST*ADTTFGKLTCADPRLFFISITLNGTIVLSKFCVTSTYFPT*TDT 13139
Range 5: 12161 to 13054 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
674.2 bits(1465) | 0.0 | 292/298(98%) | 0/298(0%) | Plus/Plus |
Query 3 CRFR*GSMWT*RKI*KVRSCR*KLWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC*YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRMCL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REKSRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TVR*RMT 896 CRFR*GSMWT*R+I*KVRSCR*+LWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DIC YGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NR+CL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*RE+SRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*T R*RMT Subject 12161 CRFR*GSMWT*RRI*KVRSCR*ELWK*RKDEDQHMLVYRRWYPLT*IFIRTCRNCCRMK*LGPEPIQFRHTLPTLWLS*LRCYP*LLVSSG*KTC*DICWYGDDQQIFPTT*E*LGYMT*SLRSSWS*DCFSTRTHPGVLKT*NRVCL*SHSTPFTSFRPISLG*VTR*RQVKGERYARRSPRSWCAV*WRKTIS*D*PQ*WP**LYWYTTPFTAQTLPGLKDARISSM*G*REESRRFRYGG*KIVPLEYQKSAG*TLNVYYVGTIAISHVWLGDITAFAGTIGRR*VM*TGR*RMT 13054
Range 6: 13091 to 13138 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
38.2 bits(77) | 0.0 | 16/16(100%) | 0/16(0%) | Plus/Plus |
Query 933 STPQITLALYTISRRT 980 STPQITLALYTISRRT Subject 13091 STPQITLALYTISRRT 13138
Range 7: 12162 to 12659 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
372.2 bits(806) | 0.0 | 163/166(98%) | 0/166(0%) | Plus/Plus |
Query 4 VGSGREVCGRNAKFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISASTETTSKFFLRHKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKL 501 VGSGREVCGRNA+FRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISA TETTSKFFLR KSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKL Subject 12162 VGSGREVCGRNAEFRKYDRAVKSYGNKEKTRISTC*FTEGGIRLRRFLYELAGIAVG*SN*GQNRYSFGIRYRLYGFLS*DVTPDCS*AVVKRRARISAGTETTSKFFLRRKSSLGI*RDRYAQAGHKIVFQQGHTRGY*RLKTVCAYRVIRPLSRAFVLFL*VKL 12659
Range 8: 12708 to 13139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
333.7 bits(722) | 0.0 | 143/144(99%) | 0/144(0%) | Plus/Plus |
Query 550 EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRYVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDER 981 EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRR VSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDER Subject 12708 EVGAPSNGGKL*VKIDPSDGLNNYTGILLHLRHKRYQD*KTPGFPQCEDKGKSREGFVTGGRRSCL*NIRKARDKRSTCIM*VL*RSHMSG*ATLRHSQEQLEDAELCRRDVSV*HG*LYNF*GEKYDQHRRSR*HYTLYQDER 13139
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 13115 to 14095 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
193.5 bits(416) | 0.0 | 97/327(30%) | 0/327(0%) | Plus/Plus |
Query 2 VSVQVGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE 982 +SV +GK ++ + +VPL + ++KR P VV +++ Y ++ + L D+ R + Y + +A++ + + ++ + L+R +P N +YD RVAW V + L I F + + +P+VP+E D HE +SYFSR++ K + PE+ + +++EN + A II++YYSIYGTNA RI RRP L V ++ + + L VE + IN R L R Y+ LT R + I RNNW+TL +DG +A+DT + + + D+ + +IK+NE Subject 13115 LSVYLGKATGLSDLGPNLVVPLVKVTLEKRSDDTSKRWPPVVLSFLSTYASVCDDLVDDAFNLRGKALQPYLVEVLAYVDALAGVKLTGNFVNGFITGHLIRTKPKNLTYDSRVAWFTTVSSLLSAFIHKHFGRVVSVSVTSARPFVPLEGTDQLHESNSYFSRVALTQGRSKQSSVVPELMMSAIDAVLDENLTVVENIGEAACIIVLYYSIYGTNAIRINRRPGVLPVVLRDRPVVIKLSRVEAVLSERGKAMQINCFRTLARGYAALTLTLRLKFNIYRNNWRTLGDIDGRVAFDTVNFVPRSLIPGYLENDYYKAVAFIKSNE 14095
Grapevine leafroll-associated virus 6, complete genome
Range 1: 11578 to 11778 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
51.0 bits(105) | 0.0 | 25/67(37%) | 0/67(0%) | Plus/Plus |
Query 539 EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED 739 E+ KLV L+ +N L +T A++++L Y Y TNA R P L+ IK +V+KV GV++ Subject 11578 ELTRKLVGALLNKNLTLDVTYTQAVLMLLQRYIHYRTNALRFVNLPVKLDYLIKSEVKKVDFTGVDE 11778
Grapevine leafroll-associated virus 5, complete genome
Range 1: 11141 to 11341 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 24/67(36%) | 0/67(0%) | Plus/Plus |
Query 539 EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED 739 E+ KLV L+ N + +T A++I+L Y Y TNA R P L+ IK +V++V GV++ Subject 11141 ELTRKLVGALLNRNLSMDVTYTQAVLILLQRYIHYRTNALRYVNLPAKLDYMIKNEVKQVDFSGVDE 11341
Grapevine leafroll-associated virus 4, complete genome
Range 1: 11588 to 11788 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 24/67(36%) | 0/67(0%) | Plus/Plus |
Query 539 EIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVED 739 E+ KLV L+ +N L ++ A++++L Y Y TNA R P L+ IKG V V GV++ Subject 11588 ELTRKLVAALLNKNLGLEISYTQAVLMLLQRYIHYRTNALRYVNLPVRLDYMIKGVVRSVDFSGVDN 11788
Nucleotide Sequence (331 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
250.8 | 1231.3 | 39% | 3.418e-66 | 79% | NC_004667 | |
155.9 | 230.3 | 39% | 1.22e-37 | 44% | NC_022072 | |
102.3 | 102.3 | 32% | 1.677e-21 | 38% | NC_016509 | |
83.5 | 83.5 | 31% | 7.584e-16 | 38% | NC_010178 | |
107.4 | 169.1 | 26% | 5.097e-23 | 40% | NC_029783 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 1869 to 2189 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
250.8 bits(541) | 0.0 | 103/107(96%) | 0/107(0%) | Minus/Plus |
Query 1 SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS 321 SVSYCSRESQNCDSRADAG+M DVYDISPQQVAEAMDKKGAL FD+ALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS Subject 1869 SVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDIALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS 2189
Range 2: 1868 to 2188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.5 bits(488) | 0.0 | 100/107(93%) | 0/107(0%) | Plus/Minus |
Query 2 EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNSNAPFLSIASATCCGDISYTSSI*PASALESQFCDSRLQ*DTD 322 EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYN+STGNIRA S ++APFLSIASATCCGDISYTS+I PASALESQFCDSRLQ*DTD Subject 1868 EVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNNSTGNIRAMSKTSAPFLSIASATCCGDISYTSTIKPASALESQFCDSRLQ*DTD 2188
Range 3: 1869 to 2186 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
211.8 bits(456) | 0.0 | 88/106(83%) | 0/106(0%) | Plus/Minus |
Query 4 SAYVRKGEEPAYVREGMFIHLTTLTNIVGQVISFPLH*RIEFLQVNFAVTIQQLHGEHKS*IEFQRTLLIHSLCHLLRGYIVHILHITRVSSGIAILRFSTTVRYR 321 SAY+RKGE+PAYVREGMFIHLTTLTNIVGQVI+FPLH RIEF QVNF VT+QQLHGEHKS +E QRTLLIHSLC+LLRGYIVHI H TR+ S IA+LRFSTTVR+R Subject 1869 SAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQVNFTVTVQQLHGEHKSYVENQRTLLIHSLCYLLRGYIVHIHHKTRIGSRIAVLRFSTTVRHR 2186
Range 4: 1861 to 2187 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
210.0 bits(452) | 0.0 | 90/109(83%) | 0/109(0%) | Minus/Plus |
Query 3 LDCLYLTVVENRRIAIPELTRVIWRMCTIYPRSRWQRLWIRRVRWNSI*LLCSPWSCCMVTAKFTWRNSIR**RGKEITWPTMLVSVVRCMNIPSLT*AGSSPFLTYAL 329 L L LTVVENRR AI E RV+W MCTIYPRSR QRLWIRRVRW S *LLCSPWSCC VT KFTW+NSIR *RGK ITWPTMLVSVVRCMNIPSLT*AG SPFL YAL Subject 1861 LQSLCLTVVENRRTAILEPMRVLWWMCTIYPRSR*QRLWIRRVRWFST*LLCSPWSCCTVTVKFTWKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYAL 2187
Range 5: 1868 to 2188 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
170.1 bits(365) | 0.0 | 90/107(84%) | 0/107(0%) | Minus/Plus |
Query 2 VCILL*SRIAELRFQS*RGLYGGCVRYIPAAXXXXXXXXXXXGIRFSSYVPRGAVVW*RRSLLGGTRYVSEEGRRLPGLQCWSVW*DV*TFLL*RKRVLHLFLRTHF 322 VC+LL*SRIAELRF S G YGGCVRYIPAAG RGYG*EGC G R SSYVPRG VV *R SLLG TRYV EEGR LPGLQCWSVW*DV*TFLL*RKRV HLFL THF Subject 1868 VCVLL*SRIAELRF*SRCGFYGGCVRYIPAAGSRGYG*EGCAGFRHSSYVPRGVVVR*R*SLLGRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHF 2188
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2588 to 2905 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
155.9 bits(334) | 0.0 | 63/106(59%) | 0/106(0%) | Minus/Plus |
Query 4 SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRT 321 S+SYCS SQ C R + GYM DVYD+ ++AEA+D KG + FDL M PVELL G+GEVYLEELDT V+R GD L Y+VG CGE Y H FS VS + T +Y RT Subject 2588 SISYCSTPSQECSVRCEGGYMVDVYDLGFDELAEALDVKGVMIFDLCFMLPVELLAGSGEVYLEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRT 2905
Range 2: 2587 to 2871 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
74.4 bits(156) | 0.0 | 42/95(44%) | 0/95(0%) | Plus/Minus |
Query 38 TLEKECSYISPH*PTL*AR*SPSLFTNVSSSSK*TSPLPYNSSTGNIRAKSNSNAPFLSIASATCCGDISYTSSI*PASALESQFCDSRLQ*DTD 322 T E C Y SP PT SP+ T VS+SSK TSPLP +SSTG+++ KS PF S ASA S TS++ P S L C+ Q*+ + Subject 2587 TRENSCVYDSPQRPTEYINLSPARLTLVSNSSKYTSPLPASSSTGSMKHKSKIITPFTSNASANSSNPRS*TSTMYPPSHLTEHSCEGVEQ*EME 2871
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2447 to 2761 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
102.3 bits(217) | 0.0 | 40/105(38%) | 0/105(0%) | Minus/Plus |
Query 7 SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVR 321 +++YC +++ CD +A G+M DVYD+ ++A+A++KK F+L LMFP+EL +G + + EL V R+GD + Y VG G+ Y HS + FF + V+ Subject 2447 NITYCQMDTRFCDHKAPVGFMVDVYDLDVFELAQALEKKDIKIFELCLMFPIELTARDGSLTIPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQ 2761
Pineapple mealybug wilt-associated virus 1, complete genome
Range 1: 2379 to 2690 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 39/104(38%) | 0/104(0%) | Minus/Plus |
Query 10 SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYV 321 ++S C+ NC R+ M DVYDI +Q+ +AM+ KGA+ L MFP E+L G V E V +EG L Y +G+ G+ Y HS + + T S V Subject 2379 NLSVCNASVPNCKHRSSVITMVDVYDIHVEQLLQAMEVKGAVLARLFFMFPPEILAGAESVQYPETSLTVSKEGRDLVYFIGETGDSYVHSLDTLPSYITRSVV 2690
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 2985 to 3284 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
107.4 bits(228) | 0.0 | 40/100(40%) | 0/100(0%) | Minus/Plus |
Query 22 SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFT 321 + ++C ++++ C + +AG+M DVYD+S +VA ++ KG FD+ M PVEL+ +G ++EL+T+V R+GD L Y+VG G+ Y+HSF V T Subject 2985 TATFCMKDTRCCTKKCEAGFMVDVYDLSSYEVARSLAIKGVRTFDIVFMLPVELIARDGSYTIQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLT 3284
Nucleotide Sequence (372 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
297.5 | 1439.5 | 29% | 3.468e-80 | 69% | NC_004667 | |
190.8 | 268.4 | 36% | 4.838e-48 | 43% | NC_022072 | |
134.9 | 182.2 | 47% | 3.256e-31 | 45% | NC_016509 | |
119.3 | 119.3 | 33% | 1.594e-26 | 41% | NC_029783 | |
79.4 | 79.4 | 33% | 1.595e-14 | 31% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 2091 to 2462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
297.5 bits(643) | 0.0 | 122/124(98%) | 0/124(0%) | Plus/Plus |
Query 1 DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA 372 DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVT RSLVP+FVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA Subject 2091 DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA 2462
Range 2: 2093 to 2461 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
262.7 bits(567) | 0.0 | 117/123(95%) | 0/123(0%) | Minus/Minus |
Query 3 AYSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR* 371 AYSNVLFSNVP+VLSA*E*ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL VTSVPGDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR* Subject 2093 AYSNVLFSNVPIVLSA*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR* 2461
Range 3: 2091 to 2462 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
241.2 bits(520) | 0.0 | 102/124(82%) | 0/124(0%) | Minus/Minus |
Query 1 GVLECSILKRPYGVERVGIDPVDKIRIEDYRLEGHTRTSYNRYKHQRFAHERRDQ*PTRDLGSR*LLCPTHSKMMVAATVSLILKLKHVPG*SAYVRKGEEPAYVREGMFIHLTTLTNIVGQVI 372 G+L+ SIL+ PY VERVGIDPVDK+RIEDY L+GHTRTSYNRY+HQRFAHERRDQ P R+L SR*LL PTHS+MMV TVSLIL LKHVPG SAY+RKGE+PAYVREGMFIHLTTLTNIVGQVI Subject 2091 GILKRSILECPYSVERVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVI 2462
Range 4: 2093 to 2452 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
236.6 bits(510) | 0.0 | 99/120(82%) | 0/120(0%) | Plus/Plus |
Query 3 LPGLQCWSVW*DV*TFLL*RKRVLHLFLRTHFIRERV*A*V*GIPLRLPSSYYV*GTEVTWNRGHA*VIGPDVRGQIVGVYTCCSWF*CVLQDDSPRFGFCRQDLFLRAQHHRDV*E*NI 362 LPGLQCWSVW*DV*TFLL*RKRV HLFL THF+RERV*A V*GIPL LPSS+YV*G+EVTWN G+ *V+GP VRGQI GV+TCCSWF*CVL D+SPRFG CRQDLFLRAQH+RD+ E*N+ Subject 2093 LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLRAQHYRDIRE*NV 2452
Range 5: 2200 to 2457 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.9 bits(347) | 0.0 | 70/86(81%) | 0/86(0%) | Minus/Minus |
Query 110 TRMFYSQTSLWC*ARRNRSCRQNPNRGLSS*RTH*NQLQQV*TPTICPRTSGPMTYA*PRFQVTSVPYT**DDGSRNGIPHTQA*T 367 T+ FYS+ SL C*ARRNRSCRQ+PNRGL S*RTH*NQLQQV*TP ICPRT+GP TY *P+FQVTS PYT**DDG+ NGIPHT A*T Subject 2200 TQTFYSRMSL*C*ARRNRSCRQSPNRGLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T 2457
Range 6: 2092 to 2139 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 16/16(100%) | 0/16(0%) | Minus/Minus |
Query 2 NVHTSHHTDQHCRPGN 49 NVHTSHHTDQHCRPGN Subject 2092 NVHTSHHTDQHCRPGN 2139
Range 7: 2092 to 2364 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
167.9 bits(360) | 0.0 | 78/91(86%) | 0/91(0%) | Plus/Plus |
Query 2 ITWPTMLVSVVRCMNIPSLT*AGSSPFLTYALHPGTCLSLSMRDTVAATIILLCVGHRSHLEPRSRVGHWSRRSWANRWCXXXXXXXXXCP 274 ITWPTMLVSVVRCMNIPSLT*AG SPFL YAL PGTCLS SMRDTV TII LCVG RSHLE R R+G WSRRSWANRWC YLL*LVLVCP Subject 2092 ITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRWCSYLL*LVLVCP 2364
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2810 to 3181 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
190.8 bits(410) | 0.0 | 76/124(61%) | 0/124(0%) | Plus/Plus |
Query 1 DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA 372 D L Y+VG CGE Y H FS VS + T +Y RT SG V+K+EYEGYR GYHHLT+ R+QK EVTRR +V +F K++V IPV+ G+ +SFK++VLD+DFVDR+YSYALNT+ FE RTFEYA Subject 2810 DKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYALNTVSNFEMRTFEYA 3181
Range 2: 2827 to 3180 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
77.6 bits(163) | 0.0 | 51/118(43%) | 0/118(0%) | Minus/Minus |
Query 18 AYSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLRVTSVPGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PT 371 AYSNV S + V A E STKS S T LKD P+ TGI T N T VTS+ F V+ W*P PSYS+L T PD V V+ T E C Y SP PT Subject 2827 AYSNVRISKLDTVFKAYEYTRSTKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPT 3180
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2669 to 3040 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
134.9 bits(288) | 0.0 | 56/124(45%) | 0/124(0%) | Plus/Plus |
Query 1 DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA 372 D + Y VG G+ Y HS + FF + V+ SG+ F +EY GYR GYH ++C + + R + TF G SLV IP +A +SF+ + LDSDFVDR+YSY LNT F +RTFEYA Subject 2669 DVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSYLLNTTSAFVDRTFEYA 3040
Range 2: 2884 to 3039 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.3 bits(97) | 0.0 | 26/52(50%) | 0/52(0%) | Minus/Minus |
Query 216 AYSNVLFSNVPMVLSA*E*ILSTKSESRTIVLKDTLEPATTGINTNDLPTNV 371 AYSNVL +N +VLS E STKSES+ I L + A +GI T P NV Subject 2884 AYSNVLSTNADVVLSKYEYTRSTKSESKYICLNERKPSAISGIITRLCPLNV 3039
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 3207 to 3578 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 51/124(41%) | 0/124(0%) | Plus/Plus |
Query 1 DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA 372 D L Y+VG G+ Y+HSF V T V S + EY GYRCGYHH+ M R + T GK++V P + FK I +D++FV R+Y+YALN TF RTFEYA Subject 3207 DLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYALNVTTTFSERTFEYA 3578
Range 1: 1308 to 1670 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
79.4 bits(167) | 0.0 | 38/121(31%) | 0/121(0%) | Plus/Plus |
Query 7 LAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEY 369 + Y +G G+ Y H + + T + V ++ G + + YEG R GY + + R+ S T T R + G +PV K + LD DFV+R+ SY LN RTFEY Subject 1308 VTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSYLLNVAAGVNERTFEY 1670
Nucleotide Sequence (364 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
238.9 | 1171.3 | 32% | 1.549e-62 | 70% | NC_004667 | |
152.3 | 219.8 | 37% | 1.818e-36 | 40% | NC_022072 | |
93.2 | 93.2 | 33% | 1.13e-18 | 36% | NC_029783 | |
104.6 | 104.6 | 33% | 4.025e-22 | 41% | NC_016509 | |
57.4 | 57.4 | 33% | 6.487e-08 | 25% | NC_005065 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 2057 to 2416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
238.9 bits(515) | 0.0 | 106/120(88%) | 0/120(0%) | Plus/Minus |
Query 3 A*EKILSTKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLHVTSDQGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKMKNPLTLEKECSYIPPH*PTS*ARRSPSLFTNISTSS 362 A*E ILSTKSESRTIVLKDTLEPATTG+NT+DLPTN GTNDL+VTS GDF ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EK+KNPLTLEKECSYI PH*PT *AR SPSLFTN+S+SS Subject 2057 A*E*ILSTKSESRTIVLKDTLEPATTGMNTSDLPTNDGTNDLYVTSVPGDF*ALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKVKNPLTLEKECSYISPH*PTL*AR*SPSLFTNVSSSS 2416
Range 2: 2055 to 2417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
232.0 bits(500) | 0.0 | 108/121(89%) | 0/121(0%) | Minus/Plus |
Query 2 LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSYA 364 LEE+D LVKREGD LAY VGQCG MYEHSFS+VSGFF FSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSP +EVT RSLVP+FVGKSLVF+PVVAGSSVSFKTIVLDSDFVDRI+SYA Subject 2055 LEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTYRSLVPSFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYA 2417
Range 3: 2055 to 2417 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
213.7 bits(460) | 0.0 | 88/121(73%) | 0/121(0%) | Plus/Minus |
Query 2 RVGEDPVDKIRIEDYRLEGHTRTSYNRHKHQRFAHERRDQ*PTRDLGPRRLLRPTHSKMMVAATVSLVLKLKHVPG*SAHVRKDEEPAHAREGMLIHPTTLTNLIGQEITFPLHQHINFLQ 364 RVG DPVDK+RIEDY L+GHTRTSYNR++HQRFAHERRDQ P R+L R LL PTHS+MMV TVSL+L LKHVPG SA++RK E+PA+ REGM IH TTLTN++GQ ITFPLHQ I F Q Subject 2055 RVGIDPVDKVRIEDYCLKGHTRTSYNRYEHQRFAHERRDQRPIRNLSSR*LLSPTHSEMMVTTTVSLIL*LKHVPGRSAYIRKGEKPAYVREGMFIHLTTLTNIVGQVITFPLHQRIEFFQ 2417
Range 4: 2057 to 2416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
196.3 bits(422) | 0.0 | 88/120(73%) | 0/120(0%) | Minus/Plus |
Query 3 GGS*YVGEEGR*SPGL*GWSVWWDV*AFLL*RERVLHLFLRAHFIRERV*A*VRGIPLRLPSSYYV*GAEVSLVRGHV*VIGPDVRGQIVGVYACCSWF*CVLQDDSPRFGFCRQDLLLR 362 G + YVGEEGR* PGL WSVW DV* FLL*R+RV HLFL HF+RERV*A V GIPL LPSS+YV*G+EV+ G+V*V+GP VRGQI GV+ CCSWF*CVL D+SPRFG CRQDL LR Subject 2057 GRTRYVGEEGR*LPGLQCWSVW*DV*TFLL*RKRVFHLFLCTHFVRERV*ARV*GIPLWLPSSHYV*GSEVTWN*GYV*VVGPVVRGQIAGVHTCCSWF*CVL*DNSPRFGLCRQDLFLR 2416
Range 5: 2056 to 2328 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
148.6 bits(318) | 0.0 | 64/91(70%) | 0/91(0%) | Minus/Plus |
Query 91 WRKLICW*RGKVISWPMRLVSVVGCMSIPSLA*AGSSSFLTCALHPGTCLSLSTRDTVAATIILLCVGRRSLLGPRSRVGHWSRRSWANRW 363 W+ I W*RGKVI+WP LVSVV CM+IPSL *AG S FL AL PGTCLS S RDTV TII LCVG RS L R R+G WSRRSWANRW Subject 2056 WKNSIRW*RGKVITWPTMLVSVVRCMNIPSLT*AGFSPFLMYALRPGTCLS*SMRDTVVVTIISLCVGLRSHLELRLRIGRWSRRSWANRW 2328
Range 6: 2200 to 2379 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
103.7 bits(220) | 0.0 | 46/60(77%) | 0/60(0%) | Plus/Minus |
Query 40 GLSS*RTH*NQLQQA*TPTICPRTSGPMTYT*PRTKETSAPYT**DDGSRNGIPRTQA*T 219 GL S*RTH*NQLQQ *TP ICPRT+GP TYT*P+ + TS PYT**DDG+ NGIP T A*T Subject 2200 GLLS*RTH*NQLQQV*TPAICPRTTGPTTYT*PQFQVTSEPYT**DDGNHNGIPHTLA*T 2379
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 2774 to 3136 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.3 bits(326) | 0.0 | 67/121(55%) | 0/121(0%) | Minus/Plus |
Query 2 LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSYA 364 LEE+D V+R GD L Y VG CG Y H FS VS + +Y RT SG V+K+EYEGYR GYHHLT+ R+QK EVT R +V +F K++V +PV+ G+ +SFK++VLD+DFVDR++SYA Subject 2774 LEELDTSVRRAGDKLIYSVGLCGESYTHEFSRVSSYLTSAYTRTKSGTVYKVEYEGYRVGYHHLTVSRSQKVATKEVTRRMVVSSFPTKTIVMIPVLEGTYMSFKSLVLDTDFVDRVYSYA 3136
Range 2: 2776 to 3117 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
67.5 bits(141) | 0.0 | 46/114(40%) | 0/114(0%) | Plus/Minus |
Query 21 STKSESRTIVLKDTLEPATTGINTNDLPTNVGTNDLHVTSDQGDFCALHIVR*W*PQRYPSYSSLNTFPDEVRT*EKMKNPLTLEKECSYIPPH*PTS*ARRSPSLFTNISTSS 362 STKS S T LKD P+ TGI T N T VTS F V+ W*P PSYS+L T PD V ++ T E C Y P PT SP+ T +S SS Subject 2776 STKSVSSTNDLKDMYVPSNTGIMTIVFVGNDETTIRLVTSLVATF*LRETVKWW*PTL*PSYSTL*TVPDLVLVYADVR*EDTRENSCVYDSPQRPTEYINLSPARLTLVSNSS 3117
Grapevine leafroll-associated virus 13 genomic RNA, complete genome, isolate: a177
Range 1: 3171 to 3533 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
93.2 bits(197) | 0.0 | 44/121(36%) | 0/121(0%) | Minus/Plus |
Query 2 LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSYA 364 ++E++ +V R+GDLL Y VG G Y+HSF V V S + EY GYRCGYHH+ M R + T GK++V P + FK I +D++FV R+++YA Subject 3171 IQELNTVVTRKGDLLTYSVGGTGDSYQHSFQKVFSLLTCPAVSFSDVGAYTTEYMGYRCGYHHIQMSMYSGGEAIRSVTRRIHTTMYGKTIVKAPFYLRDILIFKEIAVDTEFVQRVYNYA 3533
Grapevine leafroll-associated virus 1, complete genome
Range 1: 2633 to 2992 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
104.6 bits(222) | 0.0 | 49/120(41%) | 0/120(0%) | Minus/Plus |
Query 5 LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSY 364 + E+ + V R+GD++ Y VG G Y HS + FF + V+ SG+ F +EY GYR GYH ++C + S R + TF G SLV +P +A +SF+ + LDSDFVDR++SY Subject 2633 IPELGVEVVRKGDVIMYTVGGVGDAYTHSVQKIISFFGSNVVQLPSGSAFSVEYVGYRLGYHQFSLCVIDTAHASYNLTRKVSTTFKGHSLVMIPEIADGFLSFRQMYLDSDFVDRVYSY 2992
Range 1: 1266 to 1625 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
57.4 bits(119) | 0.0 | 30/120(25%) | 0/120(0%) | Minus/Plus |
Query 5 LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSY 364 ++ ++ +V+ + + Y +G G Y H ++ + + V ++ G + + YEG R GY + + R+ S + T R + G +PV K + LD DFV+R+ SY Subject 1266 IQSLNTVVRWDHSTVTYFIGNTGDSYMHCRQTLVQYLTTNRVVSTLGKTYDVCYEGDRLGYKYFRVLRSSSSLATPSTLRRYDSSLNGMYFCNLPVPTAFGYEVKDMYLDGDFVERVQSY 1625
Nucleotide Sequence (2168 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 15960 to 17918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
1403.2 bits(3056) | 0.0 | 635/653(97%) | 0/653(0%) | Plus/Minus |
Query 176 T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNITYSTKTKNEQKD*LNYFIFLTFVYFKFIEESLPINSSQTFPFSTYAN*SI*IVTNKHTD*RYAYKYIPPITNVTSHDAIVYRYSDGFL*VPHRLLQQLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLKRTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQXXXXXXRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVSAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQXXXXXXXXXXXNFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DVKKYISVSLPVS*ICF*VTGTLYLADLVDIFTHLRKDIVNPETRSYIV 2134 T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRN TYSTK K+EQKD* NYFIFLTFVYFKFIE LPI TF FSTYAN*SI*IVTNKHTD*RYAYKYIPP+TNVTSHDAIVYRYSDGF *VPHRLLQ+LTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNL+RTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLV AVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*D+KKYISVSLPVS*ICF*VTG LYLADLVDIFTHLRKDIVNPETRSYIV Subject 15960 T*LIVDKLAS*EARLGPKL*LDFGVYYTILI*YHYRLYGLILQISEY*TVR*SLVILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*IVTNKHTD*RYAYKYIPPVTNVTSHDAIVYRYSDGFF*VPHRLLQKLTISTANKHAQISSDNCNPFENLTLAEQHNIFIVLRNKASRATS*RSRNLERTYYH*LDDSFVVCLLLQLRPVRPELASCIC*CIDHLSIQDIFCFPSFHDTLRITPST**PPEHLPNV*ANL*LCPPNTPLGHKRRRSLYCQ*ELFYAAQSSL**LRKPSRR*PQLADRLSLPSASYHQRYYTR*SKCKVLSRHYCTRRKGSAQ**TIGP*CFNPEMRLVGAVVRFHLLVYLRKLASRNLRTPILDSPQTKYT*LSQRRIHNHHYNNTCLSFFLSGNYL*LISLLPTLKQRSRRRVLSLR*NFWLFLSTSYRLC**SKPS*LGRNFANRTWLRENSLYFRESLLIRHPHR*KRRCNSL*APPL*VLKPSDRSF*ATLTTLR*DSGAKATSFKPWIIRR*NVSI*YVSPLKFLLVALFPLQIIQYPTPRAMVFIN*PPYLCFVVG*DIKKYISVSLPVS*ICF*VTGALYLADLVDIFTHLRKDIVNPETRSYIV 17918
Range 2: 15958 to 17217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
901.4 bits(1961) | 0.0 | 417/420(99%) | 0/420(0%) | Minus/Plus |
Query 877 VTM*DRVSGFTISFRKCVKISTRSARYNVPVT*KHI*ETGRLTLIYFLTS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLXXXXXXXXXXTALTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN 2136 VTM*DRVSGFTISFRKCVKISTRSARYN PVT*KHI*ETGRLTLIYFL S*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTA TNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN Subject 15958 VTM*DRVSGFTISFRKCVKISTRSARYNAPVT*KHI*ETGRLTLIYFLMS*PTTKQR*GG*LIKTIARGVGY*MI*SGKRATRRNLRGETY*ILTFYRLIIQGLNEVAFAPLSYLKVVKVA*NERSLGFNTYKGGAYKLLQRLFHR*GCRIKRLSRKYREFSRSQVRFAKFLPSHEGFDH*HSL*DVDRNSQKFYRRLNTRRRLLCFSVGRSEIN*R*FPLKKKERQVLL*W*LWIRRCES*VYFVWGESRIGVRRFLEASLRR*TRRWKRTTAPTNLISGLKHHGPIVYYCADPFRLVQ**RDSTLHFD*RV**R**YDALGSDKRSAS*G*RREGLRSYYSDD*AA*NNSH*QYRLRLRL*PSGVFGGHS*RFA*TFGRCSGGHQVDGVIRSVSWKEGKQKISWILK*SMH*QIHDAN 17217
Range 3: 16325 to 17419 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
801.6 bits(1743) | 0.0 | 359/365(98%) | 0/365(0%) | Minus/Plus |
Query 675 TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEXXXXXXXXXXXXXTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNRFSSNFGIARMLLLTLCCGVL*KCYVVQPVSNFQTGYNYRYLFAH 1769 TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSA YNNDVTALY LINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLL+HSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGN+FS NFGIARMLLLTLCCG L*KCYVVQPVSNFQTGYNYRYLFAH Subject 16325 TNDHLVLILIKEALINYYNASFTDEGAVLRDSRESIENFLVARCGSQNSCRVMKALITNTVCKMSIETARSFIGDLILVADSSVSALEEAKSIKDNFRLRKRRGKYYYSGDCGSDVAKVKYILSGENRGLGCVDSLKLVCVGRQGGGNVLQHLLISSLG*SIMDLSFIIVQILSASYNNDVTALYTLINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLRHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSPNFGIARMLLLTLCCGAL*KCYVVQPVSNFQTGYNYRYLFAH 17419
Range 4: 16607 to 17629 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
670.1 bits(1456) | 0.0 | 330/341(97%) | 0/341(0%) | Plus/Minus |
Query 465 VPRPSPFLHMLIRAYK**LXXXXXXXXXXXXSHPSQTSLRTTQ*CIATLMGFSKCLIAFYNN*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*YSATKRQEQHPSDPEI*REPITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMFKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPXXXXXXXXXXXXXXXKCCHVIIVQGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII 1487 V +PSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*C ATLMGFSKCLIAFY +*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL* SATKRQEQHPSDPEI RE ITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRM KQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQ+VKCCHVIIV+GGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII Subject 16607 VVKPSPFLHMLIRAYK**LINIPINVTPINTSHPSQTSLRTTQ*CTATLMGFSKCLIAFYKS*QLAPLTNMRK*VAIIVTRLKI*HWLNNITFL*CSATKRQEQHPSDPEIWRELITTD*MIRS*YVCSFNCGQSGLS*HHVFVSALIT*VSKISFASPLSTTHFE*LHRLDDLQNIFRMSKQTSSYAHQTPHLVISEGGVYTVNENCSMQLSRRCSSYVSLHDVNLSLRIVYRCPARRIINAIIRVNQSVKCCHVIIVRGGKDLHNNKR*VHDALTQR*D**VL*YVSTSLSTYAN*LQGIYAPQSSILPRQNILNFRNVGSTITTIIILASPFS*AEII 17629
Range 5: 16995 to 17645 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
495.5 bits(1075) | 0.0 | 209/217(96%) | 0/217(0%) | Minus/Plus |
Query 449 SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCLNIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVIGSLQISGSLGCCS*RFVAEYYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAIHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLGTINR*R 1099 SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCL+IRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVI SLQISGSLGCCS*RFVAE+YKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVA+HYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGL T N *+ Subject 16995 SCIEQFSLTV*TPPSLMTKWGVWWA*LEVCLDIRKMFWRSSSRWSYSKCVVERGEAKDILDT*VINALTNT*C*LRPDWPQLKEQTYYERII*SVVISSLQISGSLGCCS*RFVAEHYKNVMLFSQCQIFKRVTIIATYLRMFVSGANC*LL*KAMRHLEKPIRVAVHYCVVRSDVCDGWDVFIGVTLIGMFISYYLYALISICRKGEGLTTSNG*K 17645
Range 6: 16389 to 16928 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
392.8 bits(851) | 0.0 | 178/180(99%) | 0/180(0%) | Minus/Plus |
Query 1166 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPCTIMT*QHFTF*LTRIIALMIRRAGQ 1705 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPP TIMT*QHFT *LTRIIALMIRRAGQ Subject 16389 SPMRVPY*ETLAKV*RIFS*PGAVRKIPAES*RL*SLTQSVRCR*KQPEVLSET*YSSPTPLFQRWKKRNQLKIISA*EKGEASIIIVVIVDPTLRKLSIFCLGRIEDWGA*IP*S*FA*VDKEVETYYSTY*SHLWVKASWTYRLLLCRSFPPRTIMT*QHFTL*LTRIIALMIRRAGQ 16928
Range 7: 15957 to 16349 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
320.0 bits(692) | 0.0 | 131/131(100%) | 0/131(0%) | Minus/Plus |
Query 1745 SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y 2137 SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y Subject 15957 SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK*SCFRSAILS*GCQSRLERTITWF*Y 16349
Range 8: 17453 to 17917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
301.2 bits(651) | 0.0 | 142/155(92%) | 0/155(0%) | Minus/Plus |
Query 177 EGDEALRETHQSSDTLLRRAK*RL*WVGCIYRRNVNRYVY*LLFICSN*HM*KRGRSGNY**VKTLQ*I*NKQK*EK*NN*ASLFVRFSFL*NRLYFEVR*LNSTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR 641 EGDEALR+THQSS TLLRRAK*RL* VGCIYRRNVNRYVY*LLFICSN*HM*KR R N * VK LQ*I*NKQK*EK*NN*ASLFVR S L*NR YFEVR*LN TSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR Subject 17453 EGDEALRKTHQSSGTLLRRAK*RL*RVGCIYRRNVNRYVY*LLFICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTSRFNTLIFVKLVRKVDSDIILV*YNKRQNPIKVWDLGGPLTRLTYRQ*VR 17917
Range 9: 16235 to 16570 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
256.7 bits(554) | 0.0 | 112/112(100%) | 0/112(0%) | Plus/Minus |
Query 1524 GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V 1859 GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V Subject 16235 GVGDEY*VSDKTSGCFYRHLTDCVSDQSLHDSAGILRTAPGYEKILYTFARVS*YGTLIGERGVVIVYKRLLYKY*NQVIVRSKRL*QP*DKIAERKQLHLNPG*SDDKT*V 16570
Range 10: 15959 to 16276 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
226.0 bits(487) | 0.0 | 104/106(98%) | 0/106(0%) | Minus/Plus |
Query 1818 *RCRIEFQGLQYLFANV*RYQRDQRDTTCRLPRNIFRRRAG*H*YIF*RLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK 2135 *RCRIEFQGLQYLFANV*RYQRDQRDTT RLPRNIFRRRAG*H*YIF* LNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK Subject 15959 *RCRIEFQGLQYLFANV*RYQRDQRDTTRRLPRNIFRRRAG*H*YIF*CLNQQQSKGKVVS**RP*RVVWDIE*FEVGREQQGEI*GERHTRYLRFIV*LSRV*MK 16276
Range 11: 17699 to 17917 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
161.0 bits(345) | 0.0 | 71/73(97%) | 0/73(0%) | Plus/Minus |
Query 177 PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GRV*SSYLEI*PILQKRKTNKKT 395 PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*G+V*SSYLEI PILQKRKTNKKT Subject 17699 PNLLSIS*PRKRPA*VPNFNWILAFIILY*YNITIDFTD*FYKYQSIKP*GKV*SSYLEIKPILQKRKTNKKT 17917
Range 12: 17697 to 17918 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
157.3 bits(337) | 0.0 | 73/74(99%) | 0/74(0%) | Minus/Plus |
Query 176 LVFLFVFRFCRIGYISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG 397 LVFLFVFRFCRIG+ISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG Subject 17697 LVFLFVFRFCRIGFISR*DD*TLPHGLIL*YL*N*SVKSIVILY*YSIINAKIQLKFGT*AGLLRG*LIDNKLG 17918
Range 13: 17443 to 17694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
152.7 bits(327) | 0.0 | 73/84(87%) | 0/84(0%) | Minus/Plus |
Query 400 SCCRRR*GT*RNPSE*RYTIASCEVTFVMGGMYL*A*R*SVCLLVTIYML*LAYVEKGKVWELLIGKDSSINLK*TKVRKMK*L 651 S CRRR*GT*+NPSE*RYTIASCEVTFV GGMYL*A*R*SVCLLVTIYML*LAYVEK KV + ++GK+ SINLK*TKVRKMK*L Subject 17443 SFCRRR*GT*KNPSE*RYTIASCEVTFVTGGMYL*A*R*SVCLLVTIYML*LAYVEKEKV*QPVMGKNPSINLK*TKVRKMK*L 17694
Range 14: 17743 to 17919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.3 bits(265) | 0.0 | 59/59(100%) | 0/59(0%) | Minus/Plus |
Query 175 RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V 351 RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V Subject 17743 RGKMTKLYLTV*YSDICKISP*SR**YYISIV**TPKSN*SLGPRRASYEANLSTIS*V 17919
Range 15: 15950 to 16174 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
117.9 bits(251) | 0.0 | 74/75(99%) | 0/75(0%) | Plus/Minus |
Query 1920 NIPHHALWSXXXXXXXXXXXXVKTSKNISVSACPSPKYVSR*PARCXXXXXXXXXHICEKIL*TLKLDPTSLLPI 2144 NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEKIL*TLKLDPTSLL I Subject 15950 NIPHHALWSLLTNHLTFALLLVKTSKNISVSACPSPKYVSR*PARCISLISLISLHICEKIL*TLKLDPTSLLII 16174
Range 16: 17260 to 17391 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
96.4 bits(204) | 0.0 | 43/44(98%) | 0/44(0%) | Minus/Plus |
Query 703 NESSSQW**VLFKFRDR*DVALDALLRSTIKMLCCSASVKFSNG 834 NESSSQW**VL KFRDR*DVALDALLRSTIKMLCCSASVKFSNG Subject 17260 NESSSQW**VLSKFRDR*DVALDALLRSTIKMLCCSASVKFSNG 17391
Range 17: 17503 to 17919 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
292.5 bits(632) | 0.0 | 126/139(91%) | 0/139(0%) | Plus/Minus |
Query 175 DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVEFSHLTSKYNLFYKNEKRTKRLA*LFHFSYFCLFQIY*RVFTY**FPDLPLFYIC*LEHINSN**TYRLTLRL*IHPTHHKRHFARR 591 DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREV+FSHLTSK NLFYK+E+RTKRLA*LFHFSYFCLFQIY*R+FT+ +L LFYIC*LEHINSN**TYRLTLRL*IHPT HKRHFARR Subject 17503 DLTYCR*VSLVRGPPRSQTLIGFWRLLYYTNIISLSTLRTNFTNIRVLNREVKFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTHYWLLNLLLFYIC*LEHINSN**TYRLTLRL*IHPTRHKRHFARR 17919
Range 18: 16657 to 16944 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
224.7 bits(484) | 0.0 | 93/96(97%) | 0/96(0%) | Plus/Minus |
Query 1150 CGSFIAAQRVVSSTLLYALIKM*SAVTSLLYKAERICTIINDRSMML*PRDEISKCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQ 1437 CGSFIAAQRVVSSTLLYALIK+*SAVTSLLY+AERICTIINDRSMML*PRDEIS+CCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQ Subject 16657 CGSFIAAQRVVSSTLLYALIKV*SAVTSLLYEAERICTIINDRSMML*PRDEISRCCSTFPPPCLPTQTSFKESTHPNPRFSPDKIYLTFATSDPQ 16944
Range 19: 16378 to 16602 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
133.9 bits(286) | 0.0 | 75/75(100%) | 0/75(0%) | Plus/Minus |
Query 1492 IDFXXXXXXXXXXXXXIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL 1716 IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL Subject 16378 IDFASSNAETEESATSIKSPIKLLAVSIDILQTVLVIKAFMTRQEFCEPHLATRKFSILSRESLNTAPSSVKEAL 16602
Range 20: 16999 to 17217 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
130.7 bits(279) | 0.0 | 73/73(100%) | 0/73(0%) | Plus/Minus |
Query 877 VSIMYLLVH*SXXXXXXXXXXXXXXHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLC 1095 VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLC Subject 16999 VSIMYLLVH*SLKYPRYLLLPLFPRHTSNNSIDLMTSRTSSECLSKPLAMPTKHPTWS*AKAESILSMRIVLC 17217
Range 21: 16165 to 16326 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
127.1 bits(271) | 0.0 | 54/54(100%) | 0/54(0%) | Plus/Minus |
Query 1768 VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH 1929 VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH Subject 16165 VLSDFDNLKIR*RSESNFI*TLDNQTIKRKYLVCLSP*ISPCCSLPTSNHSISH 16326
Range 22: 17257 to 17436 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
124.8 bits(266) | 0.0 | 58/60(97%) | 0/60(0%) | Plus/Minus |
Query 658 *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSTPQQSVKSNILAIPKFEENLLPLTR*FVR 837 *HR*QTCANK*R*L*PV*KFDTG*TT*HFYS PQQSVKSNILAIPKF ENLLPLTR*FVR Subject 17257 *HR*QTCANK*R*L*PV*KFDTG*TT*HFYSAPQQSVKSNILAIPKFGENLLPLTR*FVR 17436
Range 23: 15949 to 16101 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
113.8 bits(242) | 0.0 | 48/51(94%) | 0/51(0%) | Plus/Minus |
Query 1993 QKIYQCQPARLLNMFLGNRHVVSR*SR*YLYTFAKRYCKP*NSILHRYYRS 2145 QKIYQCQPARLLNMFLGNR VVSR*SR*YLYTFAKRYCKP*NSILHRY S Subject 15949 QKIYQCQPARLLNMFLGNRRVVSR*SR*YLYTFAKRYCKP*NSILHRYLSS 16101
Range 24: 17581 to 17763 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
105.5 bits(224) | 0.0 | 46/61(75%) | 0/61(0%) | Minus/Minus |
Query 2 KLGRLTSKYNLFYKNEKRTKRPA*LFHFSYFCLFQIY*RVFTY**FPDLPLFYIC*LEHIN 184 K LTSK NLFYK+E+RTKR A*LFHFSYFCLFQIY*R+FT+ +L LFYIC*LEHIN Subject 17581 KFSHLTSK*NLFYKSERRTKRLA*LFHFSYFCLFQIY*RIFTHYWLLNLLLFYIC*LEHIN 17763
Range 25: 17580 to 17756 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
99.1 bits(210) | 0.0 | 46/59(78%) | 0/59(0%) | Minus/Minus |
Query 1 VDLPRNITYSTKTKNEQKDQLNYFIFLTFVYFKFIEESLPISSSQTFPFSTYAN*SI*I 177 V LPRN TYSTK K+EQKD NYFIFLTFVYFKFIE LPI+ TF FSTYAN*SI*I Subject 17580 VILPRNKTYSTKAKDEQKD*PNYFIFLTFVYFKFIEGFLPITGC*TFSFSTYAN*SI*I 17756
Range 26: 17582 to 17770 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
90.9 bits(192) | 0.0 | 48/63(76%) | 0/63(0%) | Plus/Plus |
Query 3 FICSN*HM*KRGRSGNY**VKTLQ*I*NKQK*EK*NN*AGLFVRFSFL*NRLYFEVSRPNLLS 191 FICSN*HM*KR R N * VK LQ*I*NKQK*EK*NN*A LFVR S L*NR YFEV N S Subject 17582 FICSN*HM*KRRRFNNQ*WVKILQ*I*NKQK*EK*NN*ASLFVRLSLL*NRFYFEVR*LNFTS 17770
Range 27: 17581 to 17694 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
61.6 bits(128) | 0.0 | 30/38(79%) | 0/38(0%) | Plus/Plus |
Query 2 IYML*LAYVEKGKVWELLIGKDSSINLK*TKVRKMK*L 115 IYML*LAYVEK KV + ++GK+ SINLK*TKVRKMK*L Subject 17581 IYML*LAYVEKEKV*QPVMGKNPSINLK*TKVRKMK*L 17694
Range 28: 17697 to 17762 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
44.1 bits(90) | 0.0 | 19/22(86%) | 0/22(0%) | Plus/Plus |
Query 118 LVFLFVFRFCRIGYISR*VDLT 183 LVFLFVFRFCRIG+ISR* D T Subject 17697 LVFLFVFRFCRIGFISR*DD*T 17762
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 16845 to 17162 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
83.5 bits(176) | 0.0 | 36/106(34%) | 0/106(0%) | Minus/Plus |
Query 1820 SNDVGSSFRVYNIFSQMCKDINEISEIQRAGYLETYLGDGQADTDIFFDVLTNNKAKVRWLVNKDHSAWCGILNDLKWEESNKEKFKGRDILDTYVLSSDYPGFK* 2137 + DV S FRVY++ + + + I +I+ +R YL Y G + I V+ ++ V +++ +H W G+ DL WE++ KG+D+LD +L +YPGFK* Subject 16845 ATDVASVFRVYDLHNYVVEKIGDIALYKRVTYLCEYDSLGGSVETITVKVVKDDGTIVDVVIDNNHKCWAGLKKDLVWEQNQARTLKGKDVLDAVLLLENYPGFK* 17162
Nucleotide Sequence (566 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
421.2 | 2392.6 | 27% | 3.679e-117 | 94% | NC_004667 |
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 8339 to 8896 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
421.2 bits(913) | 0.0 | 179/186(96%) | 0/186(0%) | Minus/Minus |
Query 8 VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVRSDKSRKGNPRLKEKPSTVHVPPVLSSRCEQNKKYTQI*KFGL*YPLQEGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKHYSVTNAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAHQDSRYCGNITY 565 VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHV SDKSRKGNPRLKE+PSTVHVPPVLSSRCEQNKKYTQI FGL*YPL+EGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKHYSV NAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAH+DSRYCGNITY Subject 8339 VQAVGHLLAPILPRHKAKSRDTWRAIADVSLVRKIREFKLPHVCSDKSRKGNPRLKERPSTVHVPPVLSSRCEQNKKYTQIKNFGL*YPLREGVPPVLTSRMARLREDEKINN*DKYDDPSVLTSRRTEAQKHYSVANAINPSLSKRQNEKLSTLKFLPSRPARKATRSSE*GAHRDSRYCGNITY 8896
Range 2: 8341 to 8895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
417.1 bits(904) | 0.0 | 179/185(97%) | 0/185(0%) | Plus/Plus |
Query 10 RLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRWSRYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKDQIFKFVCTFCFVHTVRIRPVEHVQ*RVFL*VSGCPSYSCRSVHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPA 564 RLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRW RYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKDQ F FVCTFCFVHTVR RPVEHVQ*RVFL*VSG PSYSCRS+HVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPA Subject 8341 RLYYHNSVNLDVRPIQRTESLSLLALKARILRWKASRFAFSIKRG*SRWPRYSVSVPRFFVRLIPKGRRTYLSYLFFRLLLGVPSVKLIPVALLLEVGIKDQNFLFVCTFCFVHTVRTRPVEHVQ*RVFL*VSGYPSYSCRSIHVGV*TPVSYGQETHQL*RAKCRDF*PCVEVG*GPTGDQQPA 8895
Range 3: 8339 to 8896 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
416.2 bits(902) | 0.0 | 178/186(96%) | 0/186(0%) | Plus/Plus |
Query 8 VGYITTIA*ILMCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFLKWVLKTKFLNLCVLFVLFTP*G*DRWNMYSRGFFFKSRVALPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLH 565 VGYITTIA*I MCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSF KWVLKTK LCVLFVLFTP*G DRWNMYSRG FFKSRV LPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLH Subject 8339 VGYITTIA*ISMCALFRGPSRFPCWP*RQEF*GGKLLVLPFR*RGVNRVGHAIVFLCLGSS*G*YRRVVVLISVIYFFVFS*ACHP*S*YRWHSFSKWVLKTKIFYLCVLFVLFTP*GQDRWNMYSRGSFFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR*DRGQQVTNSLH 8896
Range 4: 8340 to 8897 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
375.9 bits(814) | 0.0 | 179/186(96%) | 0/186(0%) | Plus/Plus |
Query 9 *VILPQ*RES*CAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIALVTL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS*SGY*RPNF*ICVYFLFCSHREDKTGGTCTVEXXXXXXXXXXXXXXERTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT 566 *VILPQ*RES CAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIAL TL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPS SGY*RP F ICVYFLFCSHREDKTGGTCTVEG SLSLGLPFLLLSE TCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT Subject 8340 *VILPQ*RESRCAPYSEDRVAFLAGLEGKNFKVESFSFCLFDKEGLIALATL*CFCASVLREVNTEGSSYLSQLFIFSSSLRRAIREVNTGGTPSRSGY*RPKFFICVYFLFCSHREDKTGGTCTVEGLSLSLGLPFLLLSEHTCGSLNSRILRTRDTSAIARQVSRLLALCRGRIGANR*PTACT 8897
Range 5: 8584 to 8895 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
243.9 bits(526) | 0.0 | 98/104(94%) | 0/104(0%) | Minus/Minus |
Query 253 CRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRATRDLKKNPLLYMFHRSYPHGVNKTKSTHKFKNLVFNTHFKKECHRY*LHGWHA 564 CRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGR TRDLKK+PLLYMFHRS PHGVNKTKSTHK K LVFNTHF+KECHRY*LHGWHA Subject 8584 CRLLVTCWPLSYLDTRLKVATLGAL*LMCLLSVRYGSSNSHMYAPTRVGRVTRDLKKDPLLYMFHRSCPHGVNKTKSTHK*KILVFNTHFEKECHRY*LHGWHA 8895
Range 6: 8340 to 8540 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
149.1 bits(319) | 0.0 | 66/67(99%) | 0/67(0%) | Minus/Minus |
Query 9 PFGINLTKNRGTETL*RDQRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNL 209 PFGINLTKNRGTETL*R QRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNL Subject 8340 PFGINLTKNRGTETL*RGQRD*PLFIEKAKREAFHLKILAFKASKESDSVL*IGRTSRFTLLW*YNL 8540
Range 7: 8583 to 8894 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
240.7 bits(519) | 0.0 | 99/104(95%) | 0/104(0%) | Minus/Minus |
Query 252 AGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCTLRQE*EGQPET*RKTLYCTCSTGLILTV*TKQKVHTNLKIWSLIPTSRRSATGINFTDGTP 563 AGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTC LRQE*EG PET*RKTLYCTCSTGL+LTV*TKQKVHTN K WSLIPTSRRSATGINFTDGTP Subject 8583 AGCWSPVGPYPTSTQG*KSRHLARYS*CVSCP*DTGVQTPTCMLRQE*EG*PET*RKTLYCTCSTGLVLTV*TKQKVHTNKKFWSLIPTSRRSATGINFTDGTP 8894
Range 8: 8380 to 8538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
128.4 bits(274) | 0.0 | 52/53(98%) | 0/53(0%) | Minus/Minus |
Query 49 LRY*PHEEPRHRNTIA*PTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNR 207 LRY*PHEEPRHRNTIA PTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNR Subject 8380 LRY*PHEEPRHRNTIAWPTRLTPLYRKGKTRSFPP*NSCLQGQQGKRLGPLNR 8538
Nucleotide Sequence (496 letters)
Query ID: | ds2016-55_22 |
Query definition: | No definition line |
Query length: | 575 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Alignments
Grapevine leafroll-associated virus 3, complete genome
Range 1: 14495 to 14989 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
386.4 bits(837) | 0.0 | 159/165(96%) | 0/165(0%) | Plus/Plus |
Query 2 LMGSDAVSSSFMLMNDAGDYFECGVCHNRPYLGREVIFCRKYISGRGVEITTGKNYTSNNWNEASYVIRVDVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLNPLKKSFNARIEDVLNIDDT 496 LMGSDAVSSSFMLMND GDYFECGVCHN+PYLGREVIFCRKYI GRGVEITTGKNYTSNNWNEASYVI+V+VVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILL PLKKSFNARIEDVLNIDDT Subject 14495 LMGSDAVSSSFMLMNDVGDYFECGVCHNKPYLGREVIFCRKYIGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKKSFNARIEDVLNIDDT 14989
Range 2: 14494 to 14988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
356.6 bits(772) | 0.0 | 161/165(98%) | 0/165(0%) | Minus/Minus |
Query 1 VSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTSTRITYDASFQLFDV*FLPVVISTPLPLMYFLQKITSRPK*GLL*HTPHSK*SPASFISINDDDTASLPIR 495 VSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTT T ITYDASFQLFDV*FLPVVISTPLP MYFLQKITSRPK*GLL*HTPHSK*SP SFISINDDDTASLPIR Subject 14494 VSSIFSTSSILALNDFFKGFNKISLKKMRTGETNSDLIRITPSFESEKQPG*RF*STDTIFVIL*IRVQFLGRPLTSVCV*VELTVVCANPSTTFTCITYDASFQLFDV*FLPVVISTPLPPMYFLQKITSRPK*GLL*HTPHSK*SPTSFISINDDDTASLPIR 14988
Range 3: 14495 to 14986 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
344.3 bits(745) | 0.0 | 159/164(97%) | 0/164(0%) | Minus/Minus |
Query 2 VVNIQHILDSCVERFLQRIQ*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINGGLC*PIDYVHSYYXXXXXXXXXXXXLTSGDLHSSPTYVFPTEDNFPS*VGSVVTHAALEVISRVVHQHKRR*YCVASHK 493 VVNIQHILDSCVERFLQR Q*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRIN GLC*PIDYVH YYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VG VVTHAALEVIS VVHQHKRR*YCVASHK Subject 14495 VVNIQHILDSCVERFLQRFQ*DIPKEDAHWGN*Q*PYTHYTQFRV*ETTRVEVLIYGHYLCYFVDTRPIFG*TTNVRLRISRINSGLC*PIDYVHLYYVRRLVPIVRRVVLTSGDLHSSPTYVFPTEDNFPS*VGFVVTHAALEVISHVVHQHKRR*YCVASHK 14986
Range 4: 14593 to 14988 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
311.7 bits(674) | 0.0 | 128/132(97%) | 0/132(0%) | Plus/Plus |
Query 100 TGSYLL*EIHKWERSGDHHW*ELHVEQLERGVVRNTSGRSRWVSTDHR*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIESFEEIVQRKNRGCAEY*RH 495 TGSYLL*EIH+WERSGDHHW*ELHVEQLERGVVRNTS RSRWVSTDH *FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIE+FEEIVQRKNRGCAEY*RH Subject 14593 TGSYLL*EIHRWERSGDHHW*ELHVEQLERGVVRNTSERSRWVSTDHC*FYLYANGR*WSTQKLDAYLQNNKDSVRRSEPLPWLFLRLETGCNAYKVTVSFPSAHLL*GYLIETFEEIVQRKNRGCAEY*RH 14988
Range 5: 14727 to 14987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
203.1 bits(437) | 0.0 | 85/87(98%) | 0/87(0%) | Minus/Minus |
Query 234 CRQYSAHPRFLR*TISSKDSIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*RWS 494 CRQYSAHPRFLR*TISSK SIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*+WS Subject 14727 CRQYSAHPRFLR*TISSKVSIRYP*RRCALGKLTVTLYALHPVSSLRNNQGRGSDLRTLSLLFCRYASNFWVDH*RPFAYK*N*QWS 14987
Range 6: 14496 to 14678 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
145.4 bits(311) | 0.0 | 61/61(100%) | 0/61(0%) | Minus/Minus |
Query 3 SNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP* 185 SNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP* Subject 14496 SNCSTCSSYQW*SPLLSHLCISYRR*LPVLSRVCCDTRRTRSNLPRRSSA*TTMILRRFP* 14678
Range 7: 14494 to 14538 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
36.8 bits(74) | 0.0 | 15/15(100%) | 0/15(0%) | Plus/Plus |
Query 1 SYGKRRSIIVVYADE 45 SYGKRRSIIVVYADE Subject 14494 SYGKRRSIIVVYADE 14538
Range 8: 14697 to 14987 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
201.8 bits(434) | 0.0 | 93/97(96%) | 0/97(0%) | Plus/Plus |
Query 204 YEWT*SMG*HRPPLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*IL*RNRSTQESRMC*ILTT 494 Y+ T*SMG*HRP LILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY* L*RNRSTQESRMC*ILTT Subject 14697 YK*T*SMG*HRPLLILLIRKRTLVVYPKIGRVSTK*QR*CP*IRTSTLVVSQTRNWV*CV*GHC*FPQCASSLGISY*NL*RNRSTQESRMC*ILTT 14987
Range 9: 14496 to 14654 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
119.3 bits(254) | 0.0 | 51/53(96%) | 0/53(0%) | Plus/Plus |
Query 3 LWEATQYHRRLC**TTREITSSAACVTTDPT*DGKLSSVGNT*VGEEWRSPLV 161 LWEATQYHRRLC**TT EITSSAACVTT+PT*DGKLSSVGNT*VGEEWRSPLV Subject 14496 LWEATQYHRRLC**TTWEITSSAACVTTNPT*DGKLSSVGNT*VGEEWRSPLV 14654
Blackberry vein banding associated virus isolate Mississippi1, complete genome
Range 1: 15397 to 15759 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
81.3 bits(171) | 0.0 | 34/121(28%) | 0/121(0%) | Plus/Plus |
Query 2 LMGSDAVSSSFMLMNDAGDYFECGVCHNRPYLGREVIFCRKYISGRGVEITTGKNYTSNNWNEASYVIRVDVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDS 364 L +++S + +G + E + HN PY+ RE I R+Y E+ TG+N+T N+W+E+ Y + + V VN+ + +D++G+ + I +VD +PG + DS Subject 15397 LQSGESLSCRIRFLAASGKFLEVAITHNFPYVRRENITTRRYDGSVAKEMATGRNFTLNSWDESPYHLEISVSPSRMSVEVNNGWFLSDIAGIGEEIEEIKLYRVFRTVDNQAFPGKYDDS 15759