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Nucleotide Sequence (433 letters)

Query ID:ds2016-57_12
Query definition:No definition line
Query length:638
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
44
88
132
176
220
264
308
352
396
433

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
63.4 117.1 32% 7.395e-19 38% AJ000929.1
63.4 117.1 32% 7.395e-19 38% NC_007648.1
58.8 102.5 26% 1.597e-14 36% LC144945.1
58.8 102.5 26% 1.597e-14 36% NC_031336.1
62.0 99.7 25% 1.033e-13 39% AJ877914.1

Alignments

Vicia faba double stranded RNA associated with the "447" cytoplasmic male sterility

Sequence ID: AJ000929.1 Length: 17635 Number of Matches: 2

Range 1: 6063 to 6314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 32/84(38%) 0/84(0%) Minus/Plus
Query        2  VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIITAAPNVVRETGTRRIG  253
                VMS+E+    +V T  L +DEA+M+   TL ++    VE ++LYG+  QI V+D     G R   SI+  A  + R   T RIG
Subject   6063  VMSIEKCMTQQVNTPTLVLDEASMITWETLSLITGPQVENVYLYGNTLQICVLDMYRTGGSRATKSILEQAGIIRRHYTTHRIG  6314

Range 2: 5889 to 6047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 23/53(43%) 0/53(0%) Minus/Plus
Query      263  VDLLLSNAVGVMAPGGWGKSTHMANIADSDSTMIAYTSSAVDSIKQKLHTLGK  421
                +  LL  A  V A  GWGKST +  + + D T++A TS+AV +I +KL   GK
Subject   5889  IKTLLEKATAVDAIAGWGKSTEIVKLVNQDCTVVAQTSAAVSNILEKLEQGGK  6047

Vicia faba endornavirus, complete genome

Sequence ID: NC_007648.1 Length: 17635 Number of Matches: 2

Range 1: 6063 to 6314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
63.4 bits(132) 0.0 32/84(38%) 0/84(0%) Minus/Plus
Query        2  VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIITAAPNVVRETGTRRIG  253
                VMS+E+    +V T  L +DEA+M+   TL ++    VE ++LYG+  QI V+D     G R   SI+  A  + R   T RIG
Subject   6063  VMSIEKCMTQQVNTPTLVLDEASMITWETLSLITGPQVENVYLYGNTLQICVLDMYRTGGSRATKSILEQAGIIRRHYTTHRIG  6314

Range 2: 5889 to 6047 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
53.8 bits(111) 0.0 23/53(43%) 0/53(0%) Minus/Plus
Query      263  VDLLLSNAVGVMAPGGWGKSTHMANIADSDSTMIAYTSSAVDSIKQKLHTLGK  421
                +  LL  A  V A  GWGKST +  + + D T++A TS+AV +I +KL   GK
Subject   5889  IKTLLEKATAVDAIAGWGKSTEIVKLVNQDCTVVAQTSAAVSNILEKLEQGGK  6047

Psophocarpus tetragonolobus endornavirus genomic RNA, complete genome

Sequence ID: LC144945.1 Length: 14623 Number of Matches: 2

Range 1: 4436 to 4642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 25/69(36%) 0/69(0%) Minus/Plus
Query       47  VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIIT  253
                +M+ E+        K L VDEATM + + L ++L   +E+L L+GD++Q+G+ID+  L G R  + + T
Subject   4436  IMTYEKLLTQPRECKTLLVDEATMFNWLDLALILPPTIERLILFGDQNQVGLIDSAILGGTRYLEPVTT  4642

Range 2: 4283 to 4414 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/44(39%) 0/44(0%) Minus/Plus
Query      281  LLSNAVGVMAPGGWGKSTHMANIADSDSTMIAYTSSAVDSIKQK  412
                +LS +  V+ PGG GK+T +    D+D+  +A T  AVD+I+++
Subject   4283  VLSRSAAVLGPGGSGKTTKLIEQLDNDTVAVARTRIAVDTIRRR  4414

Psophocarpus tetragonolobus endornavirus genomic RNA, complete genome

Sequence ID: NC_031336.1 Length: 14623 Number of Matches: 2

Range 1: 4436 to 4642 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
58.8 bits(122) 0.0 25/69(36%) 0/69(0%) Minus/Plus
Query       47  VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVRLNDSIIT  253
                +M+ E+        K L VDEATM + + L ++L   +E+L L+GD++Q+G+ID+  L G R  + + T
Subject   4436  IMTYEKLLTQPRECKTLLVDEATMFNWLDLALILPPTIERLILFGDQNQVGLIDSAILGGTRYLEPVTT  4642

Range 2: 4283 to 4414 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
43.7 bits(89) 0.0 17/44(39%) 0/44(0%) Minus/Plus
Query      281  LLSNAVGVMAPGGWGKSTHMANIADSDSTMIAYTSSAVDSIKQK  412
                +LS +  V+ PGG GK+T +    D+D+  +A T  AVD+I+++
Subject   4283  VLSRSAAVLGPGGSGKTTKLIEQLDNDTVAVARTRIAVDTIRRR  4414

Phytophthora endornavirus 1 mRNA for polyprotein

Sequence ID: AJ877914.1 Length: 13883 Number of Matches: 2

Range 1: 4397 to 4582 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
62.0 bits(129) 0.0 29/62(47%) 0/62(0%) Minus/Plus
Query       68  VMSVERAAITKVTTKNLFVDEATMVDKITLRMLLTDDVEQLHLYGDESQIGVIDTLALPGVR  253
                V SVERA  +K+ TK L +DE T VD + + M+  D+VE + L GD  QIG +D  A  G R
Subject   4397  VTSVERAVESKIHTKKLAIDECTQVDWLMVHMMCGDEVEIITLAGDSFQIGAVDFSASTGER  4582

Range 2: 4232 to 4369 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
37.7 bits(76) 0.0 18/46(39%) 0/46(0%) Minus/Plus
Query      290  SRVDLLLSNAVGVMAPGGWGKSTHMANIADSDSTMIAYTSSAVDSI  427
                SR   LL  +   +A  GWGKST +    D+D+T+   TS AV ++
Subject   4232  SRTLQLLQASECTLAVPGWGKSTKIVKEFDTDTTVTCVTSEAVKNL  4369