Nucleotide Sequence (815 letters)
Query ID: | ds2016-57_42 |
Query definition: | No definition line |
Query length: | 352 |
Program: | TBLASTX 2.2.29+ |
Database: | /save/stheil/db/refseq_vir/viral.genomic.fna |
Graphic Summary
Descriptions
Sequences producing significant alignments:
Description | Max score | Total score | Query cover | E value | Ident | Accession |
---|---|---|---|---|---|---|
49.6 | 95.2 | 17% | 3.904e-13 | 26% | NC_003885 | |
46.9 | 93.8 | 16% | 9.907e-13 | 28% | NC_030480 | |
50.1 | 95.6 | 16% | 2.856e-13 | 30% | NC_004018 | |
47.8 | 93.3 | 16% | 1.35e-12 | 31% | NC_027822 | |
48.7 | 124.2 | 15% | 1.276e-16 | 26% | NC_032131 |
Alignments
Range 1: 901 to 1026 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
49.6 bits(102) | 0.0 | 20/42(48%) | 0/42(0%) | Minus/Plus |
Query 433 TASSETRNSHVFDFLHYYFKRTPILLPSGQLIKKAGGVPSGS 558 T S + +V+D + YYF TPIL+P G++ +K GVPSGS Subject 901 TKRSRQKWKNVWDGMVYYFINTPILMPDGRMFRKRRGVPSGS 1026
Range 2: 1117 to 1416 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
45.5 bits(93) | 0.0 | 26/100(26%) | 0/100(0%) | Minus/Plus |
Query 34 VVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLGQSIAAGLSNSFFDK 333 V+GDD A + + + +G +++ K + + ELK LG R G +R EE + A +PE V + S R +G I + ++ F + Subject 1117 VLGDDSAFMAAETMDLSVAAEDAAAVGMDLSDEKSISVEDATELKLLGVRYRDGHAFRETEEWFKLALYPEGDVPDIATSLTRLVGLWIGGAMWDTKFSR 1416
Pseudogymnoascus destructans virus isolate PdV80251 RNA-dependent RNA polymerase gene, complete cds
Range 1: 978 to 1076 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 17/33(52%) | 0/33(0%) | Minus/Plus |
Query 433 HVFDFLHYYFKRTPILLPSGQLIKKAGGVPSGS 531 +V+D + YYF TP+L+P G++ +K GVPSGS Subject 978 NVWDAMVYYFINTPMLMPDGRMFRKRRGVPSGS 1076
Range 2: 1167 to 1466 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
46.9 bits(96) | 0.0 | 28/100(28%) | 0/100(0%) | Minus/Plus |
Query 34 VVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLGQSIAAGLSNSFFDK 333 V+GDD A HDFS+++ S + + +NP K + + K LG + G +R + + A +PE V + + S R +G + G+ + F K Subject 1167 VLGDDSAFRSCHDFSLDQASADAAAVLMILNPDKCEVTLDPTKFKLLGTTYEDGHPHRETIDWFKFALYPESSVSSIDVSLTRLVGLWLGGGMWDLHFCK 1466
Gremmeniella abietina RNA virus MS1 RNA 1, complete genome
Range 1: 1224 to 1517 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
50.1 bits(103) | 0.0 | 29/98(30%) | 0/98(0%) | Minus/Plus |
Query 40 VVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLGQSIAAGLSNSFF 333 V+GDD A +FS+E+ G + P K ++ + K LG + RG +R E + A +PE VGN S R +G I + + F Subject 1224 VLGDDSAFRSPVEFSLEQAQSDCEPTGMILKPEKCEKTEDPSDFKLLGTTYRGCHPHRDTNEWFKLALYPESRVGNLEVSLSRLVGLWIGGAMWDKEF 1517
Verticillium dahliae partitivirus 1 isolate Vd-253 segment RNA1, complete sequence
Range 1: 1194 to 1478 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
47.8 bits(98) | 0.0 | 29/95(31%) | 0/95(0%) | Minus/Plus |
Query 76 KKPDIIKMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRSRQRNLG 360 ++ +I + V+GDD A F +E G I P K + E K LG + RGG ++R EE + A +PE V + S R +G Subject 1194 QRVEIRNLRVLGDDSAFCSGDQFDLELAKGDCEPTGMVIKPEKCERTKDPGEFKLLGTTYRGGHVFRDTEEWFKLALYPESSVLTLDISFTRLIG 1478
Xinzhou partiti-like virus 1 strain XZSJSC65291 segment Seg 1 RdRp gene, complete cds
Range 1: 752 to 892 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
48.7 bits(100) | 0.0 | 20/47(43%) | 0/47(0%) | Minus/Plus |
Query 592 PYPVGRNMTKALPFIIDNLLDDKKFGLVTDISKLDTSVGPDWIDWAF 732 P +G++M K LP+ ++ LL D F DIS D+SV +IDW F Subject 752 PIYIGKDMFKELPYTLNRLLRDNFFAYCIDISAFDSSVNQIFIDWFF 892
Range 2: 1112 to 1366 GenBank Graphics
Score | Expect | Identities | Gaps | Strand |
---|---|---|---|---|
40.5 bits(82) | 0.0 | 22/85(26%) | 0/85(0%) | Minus/Plus |
Query 94 IIKMFVVGDDMATSVDHDFSIEEFSHYMSQLGFEINPSKVMFSDKGIELKFLGYSKRGGGLYRPIEELLQTAFFPEKYVGNPNRS 348 ++ +V+GDD + +E F + GF++N K + S E+ FLG++ G L R L A E + N +++ Subject 1112 VVPTYVLGDDSIFCHHNPNHLESFRVLFEEFGFKLNVRKTIVSKSSQEIVFLGHNFYGSRLTRDDFTLACLAIHTETPIVNSSQT 1366