This html page seems to have been stripped by Galaxy.
Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.

Nucleotide Sequence (346 letters)

Query ID:ds2016-57_12
Query definition:No definition line
Query length:638
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
35
70
105
140
175
210
245
280
315
346

Descriptions

Alignments

Raphanus sativas chrysovirus 1 segment RNA1 putative RNA dependent RNA polymerase gene, complete cds

Sequence ID: JQ045335.1 Length: 3638 Number of Matches: 3

Range 1: 2309 to 2584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.2 bits(219) 0.0 39/92(42%) 0/92(0%) Minus/Plus
Query        1  DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE  276
                D    ++  GLFSGWRGTTW+N  LN+ Y+   ++   R++ +    Y DHGGDD+D+ F+   D  + + VM+L+ ++AT+IKQMI  +AE
Subject   2309  DGDKHEIKKGLFSGWRGTTWINTVLNHVYVAIGVMCCERIYRDFKPAYFDHGGDDLDVGFMAPQDCYKMMVVMDLIGYEATKIKQMIGYDAE  2584

Range 2: 2249 to 2314 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 12/22(55%) 0/22(0%) Minus/Plus
Query      268  YDIFVSAIADSMYSMWLKTDDG  333
                Y  F  AIADS Y MW+   DG
Subject   2249  YSTFCCAIADSFYHMWVIDPDG  2314

Range 3: 2342 to 2584 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
50.6 bits(104) 0.0 24/81(30%) 0/81(0%) Plus/Minus
Query        1  LSFVCYHLFYLRCVELH*VHNA*KSYRICKLQKRHIYVISTMVDIFQ*AVRKKSRVNNQCTLYICIVQPTVQPCCTSPT*K  243
                LS V YHLF LRC   + +H+      I +  + HI +I+ ++ + +  +   S   +    ++ +VQ  V P C +PT*+
Subject   2342  LSIVPYHLFNLRCFIPYQIHHHHHLITILRCHESHIQIITAVIKVRRLKISVYSFTTHHSYCHVHVVQHCVDPSCPTPT*E  2584

Penicillium chrysogenum virus segment 1 RNA dependent RNA polymerase gene, complete cds

Sequence ID: AF296439.1 Length: 3562 Number of Matches: 2

Range 1: 2284 to 2559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 44/92(48%) 0/92(0%) Minus/Plus
Query        1  DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE  276
                D  V K+  GL+SGWRGTTW+N  LN+ Y+  AL    RLF    + Y+DHGGDDID+   E A    FL VM+ M F A + KQM    +E
Subject   2284  DGNVHKIWRGLYSGWRGTTWINTVLNFCYVHIALQNVERLFGVRVVLYVDHGGDDIDLGLSEPAVMPWFLEVMDAMLFKANKWKQMFGTRSE  2559

Range 2: 2218 to 2289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 11/24(46%) 0/24(0%) Minus/Plus
Query      268  KGYDIFVSAIADSMYSMWLKTDDG  339
                + Y +FV AI   MY+M L   DG
Subject   2218  RDYAVFVEAIVAGMYNMGLHDRDG  2289

Penicillium chrysogenum virus segment 1, complete genome

Sequence ID: NC_007539.1 Length: 3562 Number of Matches: 2

Range 1: 2284 to 2559 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
101.0 bits(214) 0.0 44/92(48%) 0/92(0%) Minus/Plus
Query        1  DDGVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE  276
                D  V K+  GL+SGWRGTTW+N  LN+ Y+  AL    RLF    + Y+DHGGDDID+   E A    FL VM+ M F A + KQM    +E
Subject   2284  DGNVHKIWRGLYSGWRGTTWINTVLNFCYVHIALQNVERLFGVRVVLYVDHGGDDIDLGLSEPAVMPWFLEVMDAMLFKANKWKQMFGTRSE  2559

Range 2: 2218 to 2289 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
27.2 bits(53) 0.0 11/24(46%) 0/24(0%) Minus/Plus
Query      268  KGYDIFVSAIADSMYSMWLKTDDG  339
                + Y +FV AI   MY+M L   DG
Subject   2218  RDYAVFVEAIVAGMYNMGLHDRDG  2289

Brassica campestris chrysovirus 1 isolate Hubei segment RNA1, complete sequence

Sequence ID: KP782031.1 Length: 3639 Number of Matches: 4

Range 1: 2334 to 2603 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
111.0 bits(236) 0.0 41/90(46%) 0/90(0%) Minus/Plus
Query        1  GVFKLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE  270
                G  K++ GLFSGWRGTTW+N  LN+ Y+   ++   R++ +    Y DHGGDD+D+AF +  D  R +SVM+ + ++AT+IKQM+  +AE
Subject   2334  GKHKIEKGLFSGWRGTTWINTVLNFVYVSVGVMCCERIYSDFKPAYFDHGGDDLDVAFYKPQDCYRMMSVMDRIGYEATRIKQMVGYDAE  2603

Range 2: 2268 to 2318 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.8 bits(50) 0.0 9/17(53%) 0/17(0%) Minus/Plus
Query      283  YDIFVSAIADSMYSMWL  333
                Y  F  AIA+S Y MW+
Subject   2268  YGYFCHAIAESFYHMWV  2318

Range 3: 2468 to 2602 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
38.6 bits(78) 0.0 24/45(53%) 0/45(0%) Plus/Minus
Query        2  SASSAIICFICVASNFIRFITLRNLTESANSRNAISMSSPPWSIY  136
                SAS   IC I VAS  I  ITL  L +S     A S SSPPWS Y
Subject   2468  SASYPTICLILVAS*PILSITLIIL*QS*GL*KATSRSSPPWSKY  2602

Range 4: 2333 to 2404 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
31.3 bits(62) 0.0 14/24(58%) 0/24(0%) Plus/Minus
Query      200  FSQQFNHVVPLQPENKPLSSLNTP  271
                FS     VVPLQPEN P S L  P
Subject   2333  FSTVLIQVVPLQPENSPFSILCLP  2404

Wuhan insect virus 30 strain WHZM9752 hypothetical protein gene, complete cds

Sequence ID: KX882984.1 Length: 3414 Number of Matches: 2

Range 1: 2192 to 2452 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
113.3 bits(241) 0.0 44/87(51%) 0/87(0%) Minus/Plus
Query        1  KLDNGLFSGWRGTTWLNCWLNYAYIQCALVVYSRLFPNSSLKYIDHGGDDIDMAFLEFADSVRFLSVMNLMKFDATQIKQMIADEAE  261
                K+  GL+SGWRGTTW+N  LN+ Y+  AL VY RL+  S +  +DHGGDDID+ F +  D+ RFL +M+ M F+A + KQMI + +E
Subject   2192  KIMRGLYSGWRGTTWINTVLNFCYVAVALEVYERLYGVSGVLMVDHGGDDIDLMFSDGIDAQRFLRIMDSMLFNANEWKQMIGERSE  2452

Range 2: 2203 to 2442 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
56.5 bits(117) 0.0 34/80(42%) 0/80(0%) Plus/Minus
Query       11  SAIICFICVASNFIRFITLRNLTESANSRNAISMSSPPWSIYFSELLGKSLE*TTSAHCIYA*FSQQFNHVVPLQPENKP  250
                S IICF  +A N I  +  +    S  S N  SMSSPPWS   + L   S   T++A      FS  F  VVPLQPE +P
Subject   2203  SPIICFHSLALNNILSMMRKKR*ASIPSENIRSMSSPPWSTISTPLTP*SRSYTSNATAT*QKFSTVFIQVVPLQPEYRP  2442