This html page seems to have been stripped by Galaxy.
Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.

Queries

Nucleotide Sequence (496 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
50
100
150
200
250
300
350
400
450
496

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
336.6 336.6 33% 1.026e-110 96% ACA51532

Alignments

53 kDa coat protein divergent [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ACA51532.1| Length: 477 Number of Matches: 1

Range 1: 75 to 239 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.6 bits(862) 0.0 159/165(96%) 0/165(0%) Plus/Plus
Query        2  LMGSDAVSSSFMLMNDAGDYFECGVCHNRPYLGREVIFCRKYISGRGVEITTGKNYTSNNWNEASYVIRVDVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLNPLKKSFNARIEDVLNIDDT  496
                LMGSDAVSSSFMLMNDAGDYFECGVCHN+PYLGREVIFCRKY+ GRGVEITTGKNYTSNNWNEASYVI+V+VVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILL PLKKSFNARIEDVLNIDDT
Subject     75  LMGSDAVSSSFMLMNDAGDYFECGVCHNKPYLGREVIFCRKYLGGRGVEITTGKNYTSNNWNEASYVIQVNVVDGLAQTTVNSTYTQTDVSGLPKNWTRIYKITKIVSVDQNLYPGCFSDSKLGVMRIRSLLVSPVRIFFRDILLKPLKKSFNARIEDVLNIDDT  239

Nucleotide Sequence (364 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
37
74
111
148
185
222
259
296
333
364

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
202.2 202.2 33% 1.652e-56 90% ADI49412

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADI49412.1| Length: 2237 Number of Matches: 1

Range 1: 633 to 753 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
202.2 bits(513) 0.0 109/121(90%) 0/121(0%) Minus/Plus
Query        2  LEEVDMLVKREGDLLAYEVGQCGGMYEHXXXXXXXXXXXSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPWSEVTCRSLVPTFVGKSLVFMPVVAGSSVSFKTIVLDSDFVDRIFSYA  364
                LEE+D LVKREGD LAY VGQCG MYEHSFS+VSGFF FSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSP +EVT RSLVPTFVGKSLVF+PVVAGSSVSFKTIVLDSDFVDRI+SYA
Subject    633  LEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYA  753

Nucleotide Sequence (331 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
34
68
102
136
170
204
238
272
306
331

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
219.9 219.9 32% 8.012e-63 97% ADI49412

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADI49412.1| Length: 2237 Number of Matches: 1

Range 1: 571 to 677 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
219.9 bits(559) 0.0 104/107(97%) 0/107(0%) Minus/Plus
Query        1  SVSYCSRESQNCDSRADAGYMEDVYDISPQQVAEAMDKKGALEFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  321
                SVSYCSRESQNCDSRADAG+M DVYDISPQQVAEAMDKKGAL FDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS
Subject    571  SVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  677

Nucleotide Sequence (2168 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
217
434
651
868
1085
1302
1519
1736
1953
2168

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
333.6 333.6 8% 6.845e-106 99% ADQ57692

Alignments

19.7 kDa protein [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADQ57692.1| Length: 179 Number of Matches: 1

See 2 more title(s)

Range 1: 1 to 179 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
333.6 bits(854) 0.0 177/179(99%) 0/179(0%) Minus/Plus
Query      747  MDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEXXXXXXXXXXXXXTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNRFSSNFGIARMLLLTLCCGVL  1283
                MDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGN+FSSNFGIARMLLLTLCCG L
Subject      1  MDLSFIIVQILSALYNNDVTALYILINAYNSVDDTTRWAAINDPQAEVNVVKAYVATTATTELHRTILIDSIDSAFAYDQVGCLVGIARGLLKHSEDVLEVIKSMELFEVCRGKRGSKRYLGYLSDQCTNKYMMLTQAGLAAVEGADILRTNHLVSGNKFSSNFGIARMLLLTLCCGAL  179

Nucleotide Sequence (530 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
53
106
159
212
265
318
371
424
477
530

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
318.9 318.9 31% 2.562e-96 97% ADM07404

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADM07404.1| Length: 2237 Number of Matches: 1

Range 1: 798 to 959 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
318.9 bits(816) 0.0 157/162(97%) 0/162(0%) Minus/Plus
Query       42  WVCLVAVMSQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSVVVTICTSGASDRLELRGAFDVSKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVHAFIMGNISS  527
                W  +VAVM+QAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSVVVTICTSGASDRLELRGAFDVSKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVHAFIMGNIS+
Subject    798  WGLVVAVMAQAIKDRAKSIRSYNFIKASEGSLAGVFKLFFQTVGDCFSSVVSTYAKAMVHDNFNVLETLISMPKAFICKVPGSVVVTICTSGASDRLELRGAFDVSKETFGRKLKNSRLRVFSRAIVEDSIKVMKAMKTEDGKPLPITEDSVHAFIMGNISN  959

Nucleotide Sequence (769 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
77
154
231
308
385
462
539
616
693
769

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
484.2 484.2 33% 1.611e-153 94% ADM07404

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADM07404.1| Length: 2237 Number of Matches: 1

Range 1: 1984 to 2233 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
484.2 bits(1245) 0.0 238/252(94%) 2/252(1%) Plus/Plus
Query       13  LRDALPISSRCVGCVW*SGGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC  768
                L  A  ++SR V  +    GMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC
Subject   1984  LNSATTVNSRVVNFI--VRGMYKRVLVDEVYMMHQGLLQLGVFATGASEGLFFGDINQIPFINREKVFRMDCAVFVPKKESVVYTSKSYRCPLDVCYLLSSMTVRGTEKCYPEKVVSGKDKPVVRSLSKRPIGTTDDVAEINADVYLCMTQLEKSDMKRSLKGKGKETPVMTVHEAQGKTFSDVVLFRTKKADDSLFTKQPHILVGLSRHTRSLVYAALSSKLDDKVGTYISDASPQSVSDALLHTFAPAGC  2233

Nucleotide Sequence (982 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
99
198
297
396
495
594
693
792
891
982

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
671.4 671.4 33% 0 100% AFV73384

Alignments

HSP90h [Grapevine leafroll-associated virus 3]

Sequence ID: gb|AFV73384.1| Length: 483 Number of Matches: 1

Range 1: 145 to 471 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
671.4 bits(1731) 0.0 326/327(100%) 0/327(0%) Plus/Plus
Query        2  VSVQVGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGKVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  982
                VSVQVGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKG+VEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE
Subject    145  VSVQVGKYVDVTQNLESTIVPLKVMEIKKRRGSAHVSLPKVVSAYVDFYTNLQELLSDEVTRARTDTVSAYATDSMAFLVKMLPLTAREQWLKDVLGYLLVRRRPANFSYDIRVAWVYDVIATLKLVIRLFFNKDTPGGIKDLKPYVPIESFDPFHELSSYFSRLSYEMTTGKGGKICPEIAEKLVRRLMEENYKLRLTPVMALIIILVYYSIYGTNATRIKRRPDFLNVRIKGRVEKVSLRGVEDRAFRISEKRGINAQRVLCRYYSDLTCLARRHYGIRRNNWKTLSYVDGTLAYDTADCITSKVRNTINTADHASIIHYIKTNE  471

Nucleotide Sequence (755 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
76
152
228
304
380
456
532
608
684
755

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
349.7 349.7 23% 9.626e-117 99% AGG08727

Alignments

coat protein [Grapevine leafroll-associated virus 3]

Sequence ID: gb|AGG08727.1| Length: 313 Number of Matches: 1

Range 1: 137 to 313 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
349.7 bits(896) 0.0 175/177(99%) 0/177(0%) Minus/Plus
Query      218  GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACXXXXXXXXXFKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK  748
                GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACTFFTSSS E KEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK
Subject    137  GKVSVEVAMKINAALMELCKKVMGADDAATKTKFFLYVMQIACTFFTSSSAESKEFDYIETDDGKKIYAVWVYDCIKQAAASTGYENPVRQYLAYFTPTFITATLNGKLVMNEKVMAQHGVPPKFFPYTIDCVRPTYDLFNNDAILAWNLARQQAFRNKTVTADNTLHNVFQLLQKK  313

Nucleotide Sequence (1359 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
136
272
408
544
680
816
952
1088
1224
1359

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
758.8 758.8 27% 0 99% AFV73379

Alignments

245 kDa polyprotein [Grapevine leafroll-associated virus 3]

Sequence ID: gb|AFV73379.1| Length: 2237 Number of Matches: 1

Range 1: 1497 to 1858 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
758.8 bits(1958) 0.0 360/362(99%) 0/362(0%) Minus/Plus
Query      252  LAEGKQVKAEPPRQRNLTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS  1337
                +AE KQVKAEPPRQRNLTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS
Subject   1497  VAEKKQVKAEPPRQRNLTINEGKAGKQLCMFRTCSCGVQLDVYNEATIATRFSNAFTFVDNLKGRSAVFFSKLGEGYTYNGGSHVSSGWPRVLEDILTAIKYPSVFDHCLVQKYKMGGGVPFHADDEECYPSDNPILTVNLVGKANFSIKCRKGGKVMVINVASGDYFLMPCGFQRTHLHSVNSIDEGRISLTFRATRRVFGVGRMLQLAGGVSDEKSPGVPNQQPQSQGATRTITPKSGGKALSEGSGREVKGRSTYSIWCEQDYVKKCEWLRADNPVMALKPDYTPMTFEVVKTGTSEDAVVEYLKYLAIGIERTYRALLMARNIAVTTAEGVLKVPNQVYESLPGFHVYKSGTDLIFHS  1858

Nucleotide Sequence (2539 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
254
508
762
1016
1270
1524
1778
2032
2286
2539

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
1048.5 1048.5 22% 0 100% ADM07408

Alignments

Hsp70-like protein [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADM07408.1| Length: 549 Number of Matches: 1

See 2 more title(s)

Range 1: 1 to 549 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
1048.5 bits(2710) 0.0 549/549(100%) 0/549(0%) Minus/Plus
Query      255  MEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDXXXXXXXXXXXXGPDTLLRVVDVICLFLRALILECERYTSXXXXXXXXXVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIEENFLKSAVDTDTILNG  1901
                MEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIEENFLKSAVDTDTILNG
Subject      1  MEVGIDFGTTFSTICFSPSGVSGCTPVAGSVYVETQIFIPEGSSTYLIGKAAGKAYRDGVEGRLYVNPKRWVGVTRDNVERYVEKLKPTYTVKIDSGGALLIGGLGSGPDTLLRVVDVICLFLRALILECERYTSTTVTAAVVTVPADYNSFKRSFVVEALKGLGIPVRGVVNEPTAAALYSLAKSRVEDLLLAVFDFGGGTFDVSFVKKKGNILCVIFSVGDNFLGGRDIDRAIVEVIKQKIKGKASDAKLGIFVSSMKEDLSNNNAITQHLIPVEGGVEVVDLTSDELDAIVAPFSARAVEVFKTGLDNFYPDPVIAVMTGGSSALVKVRSDVANLPQISKVVFDSTDFRCSVACGAKVYCDILAGNSGLRLVDTLTNTLTDEVVDFQPVVIFPKGSPIPCSYTHRYTVGGGDVVYGIFEGENNRAFLNEPTFRGVSKRRGDPVETDVAQFNLSTDGTVSVIVNGEEVKNEYLVPGTTNVLDSLVYKSGREDLEAKAIPEYLTTLNILHDKAFTRKNLSNKDKGFSDLRIEENFLKSAVDTDTILNG  549

Nucleotide Sequence (1342 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
135
270
405
540
675
810
945
1080
1215
1342

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
600.5 600.5 31% 0 99% ADM07404

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADM07404.1| Length: 2237 Number of Matches: 1

Range 1: 1049 to 1460 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
600.5 bits(1547) 0.0 407/412(99%) 0/412(0%) Minus/Plus
Query       96  EEFWGEVSLNDFTTFVLRNKVLIGIFVASLGATPIAWKYRRGIAANARRYAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMXXXXXXXXXGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPXXXXXXXXXXXXXXXXXTNVRGVGISTNGEVTGEEETHSPRSVQYTYXXXXXXXXXXXXERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDDKGLLPESDIGDAPIQEGGRAVDDNTAQAAADEGHRXXXXXXXXXXXXXXXXXXXXXEIPAQKEVKLEV  1331
                +EFW EVSLNDFTTFVLRNKVLIGIFVASLGA PIAWKYRRGIAANARRYAGSSYETLSSLSSQAAGGLRGLTSSTVSGGSLVVRRGFSSAVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPGDDSDGSTSSVS YDGVTNVR VGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDDKGLLPESDIGDAPIQEGGRAVDDNTAQAAADEGHREPVQSSPESVPPAAVPKVAKSEIPAQKEVKLEV
Subject   1049  KEFWSEVSLNDFTTFVLRNKVLIGIFVASLGAAPIAWKYRRGIAANARRYAGSSYETLSSLSSQAAGGLRGLTSSTVSGGSLVVRRGFSSAVTVTRATVAKRQVPLALLSFSTSYAISGCSMLGIWAHALPRHLMFFFGLGTLLGARASANTWKFGGFSNNWCAVPEVVWRGKSVSSLLLPITLGVSLIIRGLLNDTIPQLAYVPPVEGRNVYDETLRYYRDFDYDEGAGPSGTQHEAVPGDDSDGSTSSVSIYDGVTNVRDVGISTNGEVTGEEETHSPRSVQYTYVEEEVAPSAAVAERQGDPSGSGTADAMAFVESVKKGVDDVFHQQSSGETAREVEVDDKGLLPESDIGDAPIQEGGRAVDDNTAQAAADEGHREPVQSSPESVPPAAVPKVAKSEIPAQKEVKLEV  1460

Nucleotide Sequence (661 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
67
134
201
268
335
402
469
536
603
661

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
456.4 456.4 33% 3.367e-144 99% ADI49412

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADI49412.1| Length: 2237 Number of Matches: 1

Range 1: 459 to 677 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
456.4 bits(1173) 0.0 217/219(99%) 0/219(0%) Minus/Plus
Query        1  F*EPQEKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  657
                F +PQEKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS
Subject    459  FLKPQEKERLRELFPELSIQFSDSVRSSHPFANAMRSCFNGIFSRRCGGVCFFDIGGSFTYHVKAGHVNCHVCNPVLDVKDVKRRINEILFLSTAGGDSYVSSDLLTEAASKSVSYCSRESQNCDSRADAGFMVDVYDISPQQVAEAMDKKGALVFDLALMFPVELLYGNGEVYLEELDTLVKREGDYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTS  677

Nucleotide Sequence (698 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
70
140
210
280
350
420
490
560
630
698

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
336.6 407.5 30% 8.582e-112 62% AMA01632

Alignments

RNA-dependent RNA polymerase, partial [Grapevine leafroll-associated virus 3]

Sequence ID: gb|AMA01632.1| Length: 317 Number of Matches: 2

Range 1: 134 to 315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
336.6 bits(862) 0.0 178/182(98%) 0/182(0%) Minus/Plus
Query      152  ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNXXXXXXXXXXXLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGSSKLNE  697
                ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFG+SK ++
Subject    134  ELAAALRNNLGDIRQYYTYELDISKYDKSQSALMKQVEELILLTLGVDREVLSTFFCGEYDSVVRTMTKELVLSVGSQRRSGGANTWLGNSLVLCTLLSVVLRGLDYSYIVVSGDDSLIFSRQPLDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSD  315

Range 2: 258 to 315 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
70.9 bits(172) 0.0 36/58(62%) 0/58(0%) Plus/Plus
Query       11  LVFGWSVWGVMFCFEVRIFN*AVCYFCSKFLCHVVDSLFFVPDPFNLFVKFGASKLNE  184
                L    SV    F F+V+IFN A  YFCSKFL  V DSLFFVPDP  LFVKFGASK ++
Subject    258  LDIDTSVLSDNFGFDVKIFNQAAPYFCSKFLVQVEDSLFFVPDPLKLFVKFGASKTSD  315

Nucleotide Sequence (310 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
31
62
93
124
155
186
217
248
279
310

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
216.9 216.9 33% 3.759e-67 99% AMA01632

Alignments

RNA-dependent RNA polymerase, partial [Grapevine leafroll-associated virus 3]

Sequence ID: gb|AMA01632.1| Length: 317 Number of Matches: 1

Range 1: 27 to 128 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
216.9 bits(551) 0.0 101/102(99%) 0/102(0%) Minus/Plus
Query        4  SHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCIFTACAERLKYVVDERWLFYH  309
                SHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCIFTAC ERLKYVVDERWLFYH
Subject     27  SHLSSNTMLLSDWLDKRAPNAYKSLKRALGSFVFHPSMLTSYTLMVKADVKPKLDNTPLSKYVTGQNIVYHDRCVTALFSCIFTACVERLKYVVDERWLFYH  128

Nucleotide Sequence (282 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
29
58
87
116
145
174
203
232
261
282

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
147.5 147.5 30% 3.438e-42 99% CAE54462

Alignments

coat protein, partial [Grapevine leafroll-associated virus 3]

Sequence ID: emb|CAE54462.1| Length: 161 Number of Matches: 1

Range 1: 1 to 85 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
147.5 bits(371) 0.0 84/85(99%) 0/85(0%) Plus/Plus
Query       28  MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFXXXXXXXXXQEPLRQPPAQVVEPQE  282
                MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFATAALATAAQEP RQPPAQVVEPQE
Subject      1  MAFELKLGQIYEVVPENNLRVRVGDAAQGKFSKASFLKYVKDGTQAELTGIAVVPEKYVFATAALATAAQEPPRQPPAQVVEPQE  85

Nucleotide Sequence (575 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
58
116
174
232
290
348
406
464
522
575

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
391.3 391.3 33% 1.159e-131 100% ADQ57675

Alignments

divergent coat protein [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADQ57675.1| Length: 477 Number of Matches: 1

See 4 more title(s)

Range 1: 253 to 441 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
391.3 bits(1004) 0.0 189/189(100%) 0/189(0%) Plus/Plus
Query        8  GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  574
                GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY
Subject    253  GGVGPSEQLDVVALTSDVTELINTRGQGKICFPDSVLSINEADIYDERYLPITEALQINARLRRLVLSKGGSQTPRDMGNMIVAMIQLFVLYSTVKNISVKDGYRVETELGQKKVYLSYSEVREAILGGKYDASPTNTVRSFMRYFTHTTITLLIEKKIQPAYTALAKHGVPKRFTPYCFDFALLDNRY  441

Nucleotide Sequence (372 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
372

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
260.8 260.8 33% 6.494e-77 100% ADI49412

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADI49412.1| Length: 2237 Number of Matches: 1

Range 1: 645 to 768 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
260.8 bits(665) 0.0 124/124(100%) 0/124(0%) Plus/Plus
Query        1  DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA  372
                DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA
Subject    645  DYLAYNVGQCGEMYEHSFSNVSGFFTFSYVRTSSGNVFKLEYEGYRCGYHHLTMCRAQKSPGTEVTRRSLVPTFVGKSLVFIPVVAGSSVSFKTIVLDSDFVDRIYSYALNTIGTFENRTFEYA  768

Nucleotide Sequence (723 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
73
146
219
292
365
438
511
584
657
723

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
499.2 499.2 33% 3.957e-159 100% ADM07404

Alignments

methyl transferase/helicase [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ADM07404.1| Length: 2237 Number of Matches: 1

Range 1: 218 to 455 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
499.2 bits(1284) 0.0 237/238(100%) 0/238(0%) Minus/Plus
Query        1  VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMRMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR  714
                VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLM MGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR
Subject    218  VILRKGKLFNRALNVPIEVKNTFVWAKIWDEASRRRGYFYVKDRAVKFFPIVRGRATIEDFIVNTAPGCDVALPRIELWSMRERAFVCTTRGWCWFNNERLRGEIYRRRCFSSSFSVGFLMHMGFRSLKAVRFAGTNILHIPSLNEERTFGWKSADVYLPNVPKTAIVAGDRTRLGGEILASVANALNQEEVYSSVVSSITNRLVLRDQSALLSHLDTKLCDMFSQRDAMIREKPSHR  455

Nucleotide Sequence (566 letters)

Query ID:ds2016-55_2
Query definition:No definition line
Query length:1402
Program:BLASTX 2.2.29+
Database:/bank/blastdb/nr

Graphic Summary

Distribution of 19 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
57
114
171
228
285
342
399
456
513
566

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
103.6 103.6 9% 4.699e-25 98% ACA51527

Alignments

6 kDa protein [Grapevine leafroll-associated virus 3]

Sequence ID: gb|ACA51527.1| Length: 51 Number of Matches: 1

See 3 more title(s)

Range 1: 1 to 51 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
103.6 bits(257) 0.0 50/51(98%) 0/51(0%) Plus/Plus
Query      377  MYSRGFFFKSRVALPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR  529
                MYSRGFFFKSRV LPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR
Subject      1  MYSRGFFFKSRVTLPTLVGAYMWEFELPYLTDKRHISYSAPSVATFSLVSR  51