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Nucleotide Sequence (374 letters)

Query ID:ds2016-122_14
Query definition:No definition line
Query length:336
Program:TBLASTX 2.2.29+
Database:/home/stheil/save/db/all_vir/all_vir_nucl.fna

Graphic Summary

Distribution of 1 Blast Hits on the Query Sequence

Mouse-over to show defline and scores, click to show alignments

Color key for alignment scores

<40
40–50
50–80
80–200
200≤
query:
38
76
114
152
190
228
266
304
342
374

Descriptions

Sequences producing significant alignments:

Description Max score Total score Query cover E value Ident Accession
90.9 475.6 17% 4.012e-21 47% KP317931.1
57.0 111.6 11% 1.276e-06 56% AB256328.1
57.4 57.4 7% 9.284e-07 71% AY561239.1

Alignments

Human respiratory syncytial virus isolate Kilifi_10891_52_RSVA_2008, partial genome

Sequence ID: KP317931.1 Length: 5636 Number of Matches: 9

Range 1: 4961 to 5149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
90.9 bits(192) 0.0 38/63(60%) 0/63(0%) Minus/Plus
Query       79  RAQIAKAILSKKNTARGITSLDFKVYNRTTVTKTAWYWYQNRDIDQWNRTELSEITPHIYNCL  267
                +AQIAKAIL +K+ A GIT   F +Y ++TVTKT WY Y+N  IDQWNR E  EI PH YN L
Subject   4961  KAQIAKAILCRKHKAGGITFPKFNLYYKSTVTKTTWYCYRNMHIDQWNRIEGPEIMPHTYNHL  5149

Range 2: 4875 to 4949 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
33.6 bits(67) 0.0 12/25(48%) 0/25(0%) Minus/Plus
Query      277  VQHYFYQAANSIFHRTRKKILEIM*  351
                +Q YFYQ   +IFH+ RK +L+ +*
Subject   4875  IQ*YFYQTTYNIFHKIRKSVLKFI*  4949

Range 3: 4957 to 5148 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
76.7 bits(161) 0.0 35/64(55%) 0/64(0%) Minus/Plus
Query       80  RKSPNSQSNPKQKEHSQRHHIT*LQSV**DYSNQNSMVLVPKQRYRSMEQNRALRNNTAYLQLS  271
                ++S NS+SNP QK  S RHHI  +Q +   YSNQN+MVL+ K  +R MEQNR  RNN  +LQ S
Subject   4957  QQSSNSKSNPMQKT*SWRHHIPQIQLILQVYSNQNNMVLLQKHAHRPMEQNRGSRNNATHLQPS  5148

Range 4: 4853 to 4948 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
29.9 bits(59) 0.0 15/32(47%) 0/32(0%) Minus/Plus
Query      278  YGPKATIGSTLFLSSCQLHFSQN*KKNSRNHV  373
                Y  K    S +FLS+   HFSQN*K  S  H+
Subject   4853  YHSKQFTDSMIFLSNYLQHFSQN*KICSEIHI  4948

Range 5: 4967 to 5149 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
75.3 bits(158) 0.0 33/61(54%) 0/61(0%) Plus/Minus
Query       79  QTVVDMRCYF*ELCSVPLIYISVLVPVPCCFGYCSPIIHFEVK*CDASGCVLFA*DCFGYL  261
                Q VV +  YF  L SVPL+Y+ V V VPCCFGYC  ++  E   CDAS  +  A*DCF YL
Subject   4967  QMVVGVWHYFWTLYSVPLVYVHVSVAVPCCFGYCRLVV*VEFGECDASSFMFSA*DCFCYL  5149

Range 6: 4884 to 4946 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
30.9 bits(61) 0.0 14/21(67%) 0/21(0%) Plus/Minus
Query      280  HDF*NFFSSSVKNGVGSLIEI  342
                ++F N FS+ VKN VGSLIEI
Subject   4884  YEFQNRFSNFVKNVVGSLIEI  4946

Range 7: 5043 to 5150 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
55.6 bits(115) 0.0 23/36(64%) 0/36(0%) Plus/Minus
Query       78  ADSCRYAVLFLRALFCSIDLYLCFGTSTMLFWLL*S  185
                +D CR   LFL  LFCSI L  CF +STMLFWLL*+
Subject   5043  SDGCRCVALFLDPLFCSIGLCACFCSSTMLFWLL*T  5150

Range 8: 4960 to 5019 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
25.4 bits(49) 0.0 13/20(65%) 0/20(0%) Plus/Minus
Query      209  DVMPLAVFFLLRIALAIWAL  268
                +VMP A+ FL RIA AI AL
Subject   4960  NVMPPALCFLHRIAFAI*AL  5019

Range 9: 4968 to 5147 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 32/60(53%) 0/60(0%) Minus/Plus
Query       81  K*PKQS*AKRTQPEASHHLTSKCIIGLQ*PKQHGTGTKTEI*INGTEQSSQK*HRISTTV  260
                K* KQS A+  + EASH   S     LQ*PKQHGT T+T  * NGTE   QK*    TT+
Subject   4968  K*QKQSYAENIKLEASHSPNSTYTTSLQ*PKQHGTATETCT*TNGTE*RVQK*CHTPTTI  5147

Homo sapiens DNA, HIV 1 integration site, isolate:011102Pt.2#518

Sequence ID: AB256328.1 Length: 400 Number of Matches: 2

Range 1: 3 to 125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.0 bits(118) 0.0 26/41(63%) 0/41(0%) Minus/Plus
Query      130  KAILSKKNTARGITSLDFKVYNRTTVTKTAWYWYQNRDIDQ  252
                KAILSKK+    IT  DFK+Y+R TVTKTAW   +NR IDQ
Subject      3  KAILSKKSETGQITLSDFKLYHRATVTKTAWR*RKNRCIDQ  125

Range 2: 3 to 125 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
54.7 bits(113) 0.0 23/41(56%) 0/41(0%) Plus/Minus
Query      130  LIYISVLVPVPCCFGYCSPIIHFEVK*CDASGCVLFA*DCF  252
                L+  SV    P CFGYCS ++ FEV+*CD S   LFA*D F
Subject      3  LVNASVFTLAPRCFGYCSSVV*FEVR*CDLSSFTLFA*DGF  125

HIV 1 isolate PCM039 from Colombia genomic sequence

Sequence ID: AY561239.1 Length: 8696 Number of Matches: 1

Range 1: 5097 to 5180 GenBank Graphics

ScoreExpectIdentitiesGapsStrand
57.4 bits(119) 0.0 20/28(71%) 0/28(0%) Plus/Plus
Query      157  VPCCFGYCSPIIHFEVK*CDASGCVLFA  240
                VPCCFGYCS ++ FEV+*CD+S  VLFA
Subject   5097  VPCCFGYCSSVVSFEVR*CDSSSFVLFA  5180